BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] (311 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] gi|254040618|gb|ACT57414.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/311 (100%), Positives = 311/311 (100%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI Sbjct: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH Sbjct: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN Sbjct: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG Sbjct: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH Sbjct: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 Query: 301 DPKCCPQREIF 311 DPKCCPQREIF Sbjct: 301 DPKCCPQREIF 311 >gi|315122354|ref|YP_004062843.1| GTP-binding protein Era [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495756|gb|ADR52355.1| GTP-binding protein Era [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 310 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 244/305 (80%), Positives = 274/305 (89%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 M EI F NEH V+ +RSGCVALVGATNAGKSTLVN+FVGAKVSIVTHKVQTTRSIVR Sbjct: 1 MSEIVFSNEHNGLVEYKTRSGCVALVGATNAGKSTLVNKFVGAKVSIVTHKVQTTRSIVR 60 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 GIVSEK+ Q+VFLDTPGIF AKDSYHK+MIRLSWST+KHADIV LV+DS+R L+ ++HD+ Sbjct: 61 GIVSEKDVQVVFLDTPGIFKAKDSYHKMMIRLSWSTVKHADIVFLVIDSNRGLQPDVHDI 120 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 LKEI KRS RL+LILNKIDCVKPERLLEQAEI NKLV +EKTFMVSA KGHGC DVLNYL Sbjct: 121 LKEIGKRSGRLVLILNKIDCVKPERLLEQAEIINKLVCVEKTFMVSALKGHGCQDVLNYL 180 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI 242 STLP+ PW+YS DQ+SDLPMFHF AEITREKLFLHLH+EIPYSS V TEKWEE+KDGS+ Sbjct: 181 YSTLPVGPWIYSPDQVSDLPMFHFAAEITREKLFLHLHQEIPYSSHVKTEKWEERKDGSL 240 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 LIRQVIY+ER +QKKI+LGKNGQNIK ISLEA++EIAEILEQ VHL++FVKVQK+WG+DP Sbjct: 241 LIRQVIYIERSNQKKIILGKNGQNIKIISLEARREIAEILEQVVHLVIFVKVQKNWGNDP 300 Query: 303 KCCPQ 307 K Q Sbjct: 301 KYLSQ 305 >gi|307300896|ref|ZP_07580665.1| GTP-binding protein Era [Sinorhizobium meliloti BL225C] gi|307320713|ref|ZP_07600125.1| GTP-binding protein Era [Sinorhizobium meliloti AK83] gi|306893640|gb|EFN24414.1| GTP-binding protein Era [Sinorhizobium meliloti AK83] gi|306903851|gb|EFN34437.1| GTP-binding protein Era [Sinorhizobium meliloti BL225C] Length = 309 Score = 355 bits (911), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 169/284 (59%), Positives = 213/284 (75%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GATNAGKSTLVNR VGAKVSIV+HKVQTTR+I+RGI +QIVF+DTPG Sbjct: 15 TRSGFVALIGATNAGKSTLVNRLVGAKVSIVSHKVQTTRAIIRGIAIHGSAQIVFMDTPG 74 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD++ L++DS R +K + +L+ + + +L+LNK Sbjct: 75 IFKPRRRLDRAMVTTAWGGAKDADLIMLLIDSERGIKGDAEAILEGLKEVHQPKVLVLNK 134 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V+ E LL+ A AN +V E+TFM+SA G GC+DV++YL TLP PW Y DQIS Sbjct: 135 VDQVRREDLLKLAAAANDVVAFERTFMISALTGSGCEDVMDYLAETLPEGPWYYPEDQIS 194 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLFL LH+E+PY+S V TEKWEE+KDGS+ I QVIYVER SQKKI Sbjct: 195 DLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIA 254 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK G+ IK IS A+KEI+EILEQPVHL LFVKV+++WG DP+ Sbjct: 255 LGKGGEAIKAISTAARKEISEILEQPVHLFLFVKVRENWGDDPE 298 >gi|15964826|ref|NP_385179.1| GTP-binding protein Era [Sinorhizobium meliloti 1021] gi|21263594|sp|Q92R46|ERA_RHIME RecName: Full=GTPase Era gi|15074005|emb|CAC45652.1| Probable GTP-binding protein [Sinorhizobium meliloti 1021] Length = 313 Score = 355 bits (911), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 169/284 (59%), Positives = 213/284 (75%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GATNAGKSTLVNR VGAKVSIV+HKVQTTR+I+RGI +QIVF+DTPG Sbjct: 19 TRSGFVALIGATNAGKSTLVNRLVGAKVSIVSHKVQTTRAIIRGIAIHGSAQIVFMDTPG 78 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD++ L++DS R +K + +L+ + + +L+LNK Sbjct: 79 IFKPRRRLDRAMVTTAWGGAKDADLIMLLIDSERGIKGDAEAILEGLKEVHQPKVLVLNK 138 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V+ E LL+ A AN +V E+TFM+SA G GC+DV++YL TLP PW Y DQIS Sbjct: 139 VDQVRREDLLKLAAAANDVVAFERTFMISALTGSGCEDVMDYLAETLPEGPWYYPEDQIS 198 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLFL LH+E+PY+S V TEKWEE+KDGS+ I QVIYVER SQKKI Sbjct: 199 DLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIA 258 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK G+ IK IS A+KEI+EILEQPVHL LFVKV+++WG DP+ Sbjct: 259 LGKGGEAIKAISTAARKEISEILEQPVHLFLFVKVRENWGDDPE 302 >gi|25008423|sp|Q8UGK1|ERA_AGRT5 RecName: Full=GTPase Era Length = 317 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 172/290 (59%), Positives = 216/290 (74%), Gaps = 3/290 (1%) Query: 17 QDNS---RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 +DN+ RSG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+++RGI K +QIV Sbjct: 16 EDNALPTRSGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVMRGIAIHKNAQIV 75 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 F+DTPGIF + + M+ +W K AD++ L++DS R LK + +L+ + + Sbjct: 76 FMDTPGIFKPRRRLDRAMVTSAWGGAKDADLILLLIDSERGLKGDAEAILEGLKDVPQKK 135 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 IL LNKID VK E LL+ A AN+ V ++TFM+SAT G GC+D+++YL TLP PW Y Sbjct: 136 ILCLNKIDQVKREDLLKLAAAANEKVAFDRTFMISATNGSGCEDLMDYLVETLPEGPWYY 195 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 DQISDLPM AEITREKLFL LH+E+PY+S V TEKWEE+KDGS+ I QVIYVER Sbjct: 196 PEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERD 255 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQKKI LGKNG IK IS ++KE++EILEQPVHL LFVKV+++WG DP+ Sbjct: 256 SQKKIALGKNGDAIKAISTASRKELSEILEQPVHLFLFVKVRENWGDDPE 305 >gi|227821404|ref|YP_002825374.1| GTP-binding protein Era [Sinorhizobium fredii NGR234] gi|227340403|gb|ACP24621.1| GTP-binding protein [Sinorhizobium fredii NGR234] Length = 309 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 169/284 (59%), Positives = 211/284 (74%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GATNAGKSTLVN VGAKVSIV+HKVQTTR+I+RGI +QIVF+DTPG Sbjct: 15 TRSGFVALIGATNAGKSTLVNHLVGAKVSIVSHKVQTTRAIIRGIAIHDNAQIVFMDTPG 74 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD + L++DS R L+ + +L+ + IL+LNK Sbjct: 75 IFKPRRRLDRAMVTTAWGGAKDADQIVLLIDSERGLRGDAEAILEALKDVPQPKILVLNK 134 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V+PE LL+ A AN++V E+TFM+SA G GC D+++YL + LP PW Y DQIS Sbjct: 135 IDRVRPEDLLKLAAAANEVVSFERTFMISALNGSGCKDLMDYLATALPEGPWYYPEDQIS 194 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLFL LH+E+PY+S V TEKWEE+KDGS+ I QVIYVER SQKKI Sbjct: 195 DLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIA 254 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK G+ IK IS A+KEI+EILEQPVHL LFVKV+++WG DP+ Sbjct: 255 LGKGGEAIKAISTAARKEISEILEQPVHLFLFVKVRENWGDDPE 298 >gi|159184589|ref|NP_354059.2| GTP-binding protein Era [Agrobacterium tumefaciens str. C58] gi|159139891|gb|AAK86844.2| GTP-binding protein, Era family [Agrobacterium tumefaciens str. C58] Length = 313 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 172/290 (59%), Positives = 216/290 (74%), Gaps = 3/290 (1%) Query: 17 QDNS---RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 +DN+ RSG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+++RGI K +QIV Sbjct: 12 EDNALPTRSGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVMRGIAIHKNAQIV 71 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 F+DTPGIF + + M+ +W K AD++ L++DS R LK + +L+ + + Sbjct: 72 FMDTPGIFKPRRRLDRAMVTSAWGGAKDADLILLLIDSERGLKGDAEAILEGLKDVPQKK 131 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 IL LNKID VK E LL+ A AN+ V ++TFM+SAT G GC+D+++YL TLP PW Y Sbjct: 132 ILCLNKIDQVKREDLLKLAAAANEKVAFDRTFMISATNGSGCEDLMDYLVETLPEGPWYY 191 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 DQISDLPM AEITREKLFL LH+E+PY+S V TEKWEE+KDGS+ I QVIYVER Sbjct: 192 PEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERD 251 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQKKI LGKNG IK IS ++KE++EILEQPVHL LFVKV+++WG DP+ Sbjct: 252 SQKKIALGKNGDAIKAISTASRKELSEILEQPVHLFLFVKVRENWGDDPE 301 >gi|150395907|ref|YP_001326374.1| GTP-binding protein Era [Sinorhizobium medicae WSM419] gi|189037667|sp|A6U7A9|ERA_SINMW RecName: Full=GTPase Era gi|150027422|gb|ABR59539.1| GTP-binding protein Era [Sinorhizobium medicae WSM419] Length = 310 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 168/284 (59%), Positives = 212/284 (74%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GATNAGKSTL+NR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPG Sbjct: 16 TRSGFVALIGATNAGKSTLINRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPG 75 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD++ L++DS R +K + +L+ + +L+LNK Sbjct: 76 IFKPRRRLDRAMVTTAWGGAKDADLIMLLIDSERGIKGDADTILEGLKDVHQPKVLVLNK 135 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V+ E LL+ A AN++V E+TFM+SA G GC+DV++YL LP PW Y DQIS Sbjct: 136 VDQVRREDLLKLAAAANEVVAFERTFMISALTGSGCEDVMDYLAERLPEGPWYYPEDQIS 195 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLFL LH+E+PY+S V TEKWEE+KDGS+ I QVIYVER SQKKI Sbjct: 196 DLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIA 255 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK G+ IK IS A+KEI+EILEQPVHL LFVKV+++WG DP+ Sbjct: 256 LGKGGEAIKAISTAARKEISEILEQPVHLFLFVKVRENWGDDPE 299 >gi|325292415|ref|YP_004278279.1| GTP-binding protein Era [Agrobacterium sp. H13-3] gi|325060268|gb|ADY63959.1| GTP-binding protein Era [Agrobacterium sp. H13-3] Length = 316 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 170/284 (59%), Positives = 213/284 (75%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+++RGI K +QIVF+DTPG Sbjct: 21 TRSGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVMRGIAIHKNAQIVFMDTPG 80 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD++ L++DS R LK + +L+ + + IL LNK Sbjct: 81 IFKPRRRLDRAMVTSAWGGAKDADLILLLIDSERGLKGDAEAILEGLKDVPQKKILCLNK 140 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID VK E LL+ A AN+ V ++TFM+SAT G GC+D+++YL TLP PW Y DQIS Sbjct: 141 IDQVKREDLLKLAAAANEHVTFDRTFMISATNGSGCEDLMDYLVDTLPEGPWYYPEDQIS 200 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLFL LH+E+PY+S V TEKWEE+KDGS+ I QVIYVER SQKKI Sbjct: 201 DLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIA 260 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGKNG IK IS ++KE++EILEQPVHL LFVKV+++WG DP+ Sbjct: 261 LGKNGDAIKAISTASRKELSEILEQPVHLFLFVKVRENWGDDPE 304 >gi|86357029|ref|YP_468921.1| GTP-binding protein Era [Rhizobium etli CFN 42] gi|86281131|gb|ABC90194.1| GTP-binding protein [Rhizobium etli CFN 42] Length = 313 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 169/282 (59%), Positives = 209/282 (74%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPGIF Sbjct: 21 SGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIF 80 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + M+ +W K AD++ L++DS R L+ + +L+ + + IL+LNKID Sbjct: 81 KPRRRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVQQPKILVLNKID 140 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V E LL A AN+ + ++TFM+SA G GCDDV++YL STLP PW Y DQISDL Sbjct: 141 RVNREDLLALAASANEKIAFDRTFMISAETGSGCDDVMDYLASTLPEGPWYYPEDQISDL 200 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 PM AEITREKLFL LH+E+PYSS V TEKWEE+KDGS+ I QVIYVER SQKKI LG Sbjct: 201 PMRQLAAEITREKLFLRLHQELPYSSHVETEKWEERKDGSVRIEQVIYVERDSQKKIALG 260 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K G+ IK IS ++KE++EILEQPVHL LFVKV+++WG DP+ Sbjct: 261 KGGETIKAISTASRKELSEILEQPVHLFLFVKVRENWGDDPE 302 >gi|222148082|ref|YP_002549039.1| GTP-binding protein Era [Agrobacterium vitis S4] gi|221735070|gb|ACM36033.1| GTP-binding protein Era [Agrobacterium vitis S4] Length = 327 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 168/284 (59%), Positives = 212/284 (74%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 + SG VAL+G TNAGKSTLVNRFVGAKVSIV+HKVQTTR+++RGI +QIVF+DTPG Sbjct: 32 THSGFVALIGPTNAGKSTLVNRFVGAKVSIVSHKVQTTRAVMRGIAIHNNAQIVFMDTPG 91 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD++ L++DS R L+ + +L+ + IL+LNK Sbjct: 92 IFKPRRKLDRAMVTSAWGGAKDADVILLLIDSERGLRGDGEAILEALKDVHQPKILVLNK 151 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V+ E LL+ A AN+ V E+TFM+SAT G GC DV++YL LP PW Y DQIS Sbjct: 152 IDQVRHEDLLKLASTANEAVKFERTFMISATNGSGCQDVMDYLADYLPEGPWYYPEDQIS 211 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLFL LH+E+PYSS V TEKWEE+KDGS+ I QVIYVER SQKKI+ Sbjct: 212 DLPMRQLAAEITREKLFLRLHQELPYSSHVETEKWEERKDGSVRIEQVIYVERDSQKKIV 271 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGKNG IK+IS ++KE++EILEQ VHL LFVKV+++WG+DP+ Sbjct: 272 LGKNGDAIKSISTSSRKEMSEILEQTVHLFLFVKVRENWGNDPE 315 >gi|190891074|ref|YP_001977616.1| GTP-binding protein [Rhizobium etli CIAT 652] gi|190696353|gb|ACE90438.1| GTP-binding protein [Rhizobium etli CIAT 652] gi|327191323|gb|EGE58356.1| GTP-binding protein [Rhizobium etli CNPAF512] Length = 313 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 168/284 (59%), Positives = 209/284 (73%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 + SG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPG Sbjct: 19 THSGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPG 78 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD++ L++DS R L+ + +L+ + + IL+LNK Sbjct: 79 IFKPRRRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVRQPKILVLNK 138 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V E LL A AN+ + E+TFM+SA G GCDDV++YL +TLP PW Y DQIS Sbjct: 139 IDRVNREDLLALAASANEKIAFERTFMISAENGSGCDDVMDYLAATLPEGPWYYPEDQIS 198 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLFL LH+E+PYSS V TEKWEE+KDGS+ I QVIYVER SQKKI Sbjct: 199 DLPMRQLAAEITREKLFLRLHQELPYSSHVETEKWEERKDGSVRIEQVIYVERDSQKKIA 258 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK G+ IK IS ++KE++EILEQ VHL LFVKV+++WG DP+ Sbjct: 259 LGKGGETIKAISTASRKELSEILEQQVHLFLFVKVRENWGDDPE 302 >gi|218462892|ref|ZP_03502983.1| GTP-binding protein Era [Rhizobium etli Kim 5] gi|218663007|ref|ZP_03518937.1| GTP-binding protein Era [Rhizobium etli IE4771] Length = 313 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 168/284 (59%), Positives = 208/284 (73%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 + SG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPG Sbjct: 19 THSGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPG 78 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD++ L++DS R L+ + +L+ + + IL+LNK Sbjct: 79 IFKPRRRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVRQPKILVLNK 138 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V E LL A AN + E+TFM+SA G GCDDV++YL +TLP PW Y DQIS Sbjct: 139 IDRVNREDLLALAASANDKIAFERTFMISAENGSGCDDVMDYLAATLPEGPWYYPEDQIS 198 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLFL LH+E+PYSS V TEKWEE+KDGS+ I QVIYVER SQKKI Sbjct: 199 DLPMRQLAAEITREKLFLRLHQELPYSSHVETEKWEERKDGSVRIEQVIYVERDSQKKIA 258 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK G+ IK IS ++KE++EILEQ VHL LFVKV+++WG DP+ Sbjct: 259 LGKGGETIKAISTASRKELSEILEQQVHLFLFVKVRENWGDDPE 302 >gi|222085391|ref|YP_002543921.1| GTP-binding protein Era [Agrobacterium radiobacter K84] gi|221722839|gb|ACM25995.1| GTP-binding protein Era [Agrobacterium radiobacter K84] Length = 327 Score = 341 bits (875), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 168/282 (59%), Positives = 209/282 (74%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPGIF Sbjct: 34 SGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIF 93 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + M+ +W K AD++ L++DS R ++ + +L+ + + IL+LNKID Sbjct: 94 KPRRRLDRAMVTSAWGGAKDADLIMLLIDSERGIRGDAEAILEGLKEVFQPKILVLNKID 153 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V+ E LL A AN+ + ++TFMVSA G GCDDV+NYL TLP PW Y DQISDL Sbjct: 154 RVRREDLLALAAAANEKIAFQETFMVSAENGSGCDDVMNYLAKTLPEGPWYYPEDQISDL 213 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 PM AEITREKLFL LH+E+PYSS V TEKWEE+KDGS+ I QVIYVER SQKKI LG Sbjct: 214 PMRQLAAEITREKLFLRLHQELPYSSHVETEKWEERKDGSVRIEQVIYVERESQKKITLG 273 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K+G+ IK IS ++KE++ ILEQPVHL LFVKV+++WG DP+ Sbjct: 274 KSGEAIKAISTASRKELSAILEQPVHLFLFVKVRENWGDDPE 315 >gi|153009953|ref|YP_001371168.1| GTP-binding protein Era [Ochrobactrum anthropi ATCC 49188] gi|151561841|gb|ABS15339.1| GTP-binding protein Era [Ochrobactrum anthropi ATCC 49188] Length = 311 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 162/284 (57%), Positives = 204/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI E ++QIV +DTPG Sbjct: 17 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEDQAQIVLVDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K ADI+ +++DS L N LL + + +L+LNK Sbjct: 77 IFRPKRRLDRAMVTTAWGGAKDADIILVLLDSQGGLNENAEALLSSMKDVRRKKVLVLNK 136 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V P LLE A AN+LV ++TFM+SA G GC D+ YL +P PW Y DQIS Sbjct: 137 VDRVDPPVLLELARKANELVAFDQTFMISALNGSGCKDLAKYLAENVPNGPWYYPEDQIS 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKL+L LH+E+PYSS V TE+WEE+KDGS+ I QVIYVER SQKKI+ Sbjct: 197 DMPMRQLAAEITREKLYLRLHEELPYSSTVETERWEERKDGSVRIEQVIYVERESQKKIV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ IK I A+KEI+EILEQ VHL LFVKV+++WG+DP+ Sbjct: 257 LGHKGETIKAIGQSARKEISEILEQTVHLFLFVKVRENWGNDPE 300 >gi|209548602|ref|YP_002280519.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534358|gb|ACI54293.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 313 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 164/282 (58%), Positives = 209/282 (74%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPGIF Sbjct: 21 SGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIF 80 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + M+ +W + AD++ L++DS R L+ + +L+ + + IL+LNKID Sbjct: 81 KPRRRLDRAMVTSAWGGARDADLIVLLIDSERGLRGDAEAILEGLKEVRQPKILLLNKID 140 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V E LL A AN+ + ++TFM+SA G GCDDV++YL +TLP PW Y +QISDL Sbjct: 141 RVNREDLLALAAAANEKIAFDRTFMISAENGSGCDDVMDYLAATLPEGPWYYPENQISDL 200 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 PM AEITREKLFL LH+E+PY+S V TEKWEE+KDGS+ I QVIY+ER SQKKI LG Sbjct: 201 PMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYLERDSQKKIALG 260 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K G+ IK IS ++KE++EILEQPVHL LFVKV+++WG DP+ Sbjct: 261 KGGETIKAISTASRKELSEILEQPVHLFLFVKVRENWGDDPE 302 >gi|241203890|ref|YP_002974986.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857780|gb|ACS55447.1| GTP-binding protein Era [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 313 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 163/282 (57%), Positives = 207/282 (73%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPGIF Sbjct: 21 SGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIF 80 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + M+ +W + AD++ L++DS R L+ + +L+ + + IL+LNKID Sbjct: 81 KPRRRLDRAMVTSAWGGARDADLIVLLIDSERGLRGDAEAILEGLKEVRQPKILLLNKID 140 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V E LL A AN+ + E+TFM+SA G GCDD+++YL TLP PW Y DQISDL Sbjct: 141 RVNREDLLALAAAANEKIAFERTFMISAENGSGCDDLMDYLAKTLPEGPWYYPEDQISDL 200 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 PM AEITREKLFL LH+E+PY+S V TE WEE+KDGS+ I QVIY+ER SQKKI LG Sbjct: 201 PMRQLAAEITREKLFLRLHQELPYASHVETETWEERKDGSVRIEQVIYLERDSQKKIALG 260 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K G+ IK IS ++KE+++ILEQPVHL LFVKV+++WG DP+ Sbjct: 261 KGGETIKAISTASRKELSQILEQPVHLFLFVKVRENWGDDPE 302 >gi|239831497|ref|ZP_04679826.1| GTP-binding protein Era [Ochrobactrum intermedium LMG 3301] gi|239823764|gb|EEQ95332.1| GTP-binding protein Era [Ochrobactrum intermedium LMG 3301] Length = 311 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 161/284 (56%), Positives = 203/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI E +QIV +DTPG Sbjct: 17 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K ADI+ +++DS L N LL + + +L+LNK Sbjct: 77 IFRPKRRLDRAMVTTAWGGAKDADIILVLLDSQGGLNENAEALLSSMKDVRQKKVLVLNK 136 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V P LL+ A AN+LV ++TFMVSA G GC D+ YL +P PW Y DQIS Sbjct: 137 VDRVDPPVLLDLARKANELVAFDQTFMVSALNGSGCKDLAKYLADNVPNGPWYYPEDQIS 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKL+L LH+E+PY+S V TE+WEE+KDGS+ I QVIYVER SQKKI+ Sbjct: 197 DMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ IK I A+KEI+EILEQ VHL LFVKV+++WG+DP+ Sbjct: 257 LGHKGETIKAIGQSARKEISEILEQTVHLFLFVKVRENWGNDPE 300 >gi|110633305|ref|YP_673513.1| GTP-binding protein Era [Mesorhizobium sp. BNC1] gi|110284289|gb|ABG62348.1| GTP-binding protein Era [Chelativorans sp. BNC1] Length = 305 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 158/285 (55%), Positives = 207/285 (72%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +RSG VAL+GA NAGKSTL+N+ VGAKVSIVTHKVQTTR++VRGI + +QIVF+DTP Sbjct: 10 GTRSGFVALIGAPNAGKSTLLNQLVGAKVSIVTHKVQTTRALVRGIATRDRTQIVFVDTP 69 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF + + M+ +W K ADIV ++D+ R ++ + +L +++ ILILN Sbjct: 70 GIFKPRRRLDRAMVTTAWGGAKDADIVAFLLDAERGIRGDAETILDNLSEVRQPKILILN 129 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D +K ++LL A AN+ V ++TFM+SA G GCDD+L YL LP PW Y DQI Sbjct: 130 KVDRIKRDKLLVLAAEANERVSFDRTFMISALTGDGCDDLLGYLAEALPEGPWYYPEDQI 189 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SDLPM AEITREK+++ LH+E+PYS+ V TEKWEEKKDGS+ I QVIYVER SQKKI Sbjct: 190 SDLPMRQLAAEITREKIYMRLHQELPYSAHVETEKWEEKKDGSVRIEQVIYVERESQKKI 249 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +LG G I+ I A+++IA+ILEQ VHL LFVKV+++WG DP+ Sbjct: 250 VLGHKGSTIRDIGQAAREDIAQILEQKVHLFLFVKVRENWGDDPE 294 >gi|116251278|ref|YP_767116.1| GTP-binding protein Era [Rhizobium leguminosarum bv. viciae 3841] gi|115255926|emb|CAK07007.1| putative GTP and RNA-binding cell cycle regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 313 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 162/282 (57%), Positives = 207/282 (73%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPGIF Sbjct: 21 SGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIF 80 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + M+ +W + AD++ L++DS R L+ + +L+ + + IL+LNKID Sbjct: 81 KPRRRLDRAMVTSAWGGARDADLIVLLIDSERGLRGDAEAILEGLKEVRQPKILLLNKID 140 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V E LL A AN+ + ++TFM+SA G GCDD+++YL TLP PW Y DQISDL Sbjct: 141 RVNREDLLALAAAANEKIAFDRTFMISAENGSGCDDLMDYLAKTLPEGPWYYPEDQISDL 200 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 PM AEITREKLFL LH+E+PY+S V TE WEE+KDGS+ I QVIY+ER SQKKI LG Sbjct: 201 PMRQLAAEITREKLFLRLHQELPYASHVETETWEERKDGSVRIEQVIYLERDSQKKIALG 260 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K G+ IK IS ++KE+++ILEQPVHL LFVKV+++WG DP+ Sbjct: 261 KGGETIKAISTASRKELSQILEQPVHLFLFVKVRENWGDDPE 302 >gi|254718803|ref|ZP_05180614.1| GTP-binding protein Era [Brucella sp. 83/13] gi|265983785|ref|ZP_06096520.1| GTP-binding protein era [Brucella sp. 83/13] gi|306837523|ref|ZP_07470398.1| GTP-binding protein Era [Brucella sp. NF 2653] gi|306845264|ref|ZP_07477840.1| GTP-binding protein Era [Brucella sp. BO1] gi|264662377|gb|EEZ32638.1| GTP-binding protein era [Brucella sp. 83/13] gi|306274423|gb|EFM56230.1| GTP-binding protein Era [Brucella sp. BO1] gi|306407415|gb|EFM63619.1| GTP-binding protein Era [Brucella sp. NF 2653] Length = 311 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 157/284 (55%), Positives = 204/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI E +QIV +DTPG Sbjct: 17 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K ADI+ +++D+ N LL+ + + +L+LNK Sbjct: 77 IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V P LL A+ AN+LV ++TFM+SA G GC D+ YL ++P PW Y DQIS Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKL+L LH+E+PY+S V TE+WEE+KDGS+ I QVIYVER SQKKI+ Sbjct: 197 DMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ +K I A+KEI+EILEQ VHL LFVKV+++WG+DP+ Sbjct: 257 LGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVRENWGNDPE 300 >gi|23501550|ref|NP_697677.1| GTP-binding protein Era [Brucella suis 1330] gi|161618633|ref|YP_001592520.1| GTP-binding protein Era [Brucella canis ATCC 23365] gi|260566757|ref|ZP_05837227.1| GTP-binding protein Era [Brucella suis bv. 4 str. 40] gi|38257341|sp|Q8G1P9|ERA_BRUSU RecName: Full=GTPase Era gi|23347461|gb|AAN29592.1| GTP-binding protein Era [Brucella suis 1330] gi|161335444|gb|ABX61749.1| GTP-binding protein Era [Brucella canis ATCC 23365] gi|260156275|gb|EEW91355.1| GTP-binding protein Era [Brucella suis bv. 4 str. 40] Length = 311 Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 157/284 (55%), Positives = 204/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI E +QIV +DTPG Sbjct: 17 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K ADI+ +++D+ N LL+ + + +L+LNK Sbjct: 77 IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V P LL A+ AN+LV ++TFM+SA G GC D+ YL ++P PW Y DQIS Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKL+L LH+E+PY+S V TE+WEE+KDGS+ I QVIYVER SQKKI+ Sbjct: 197 DIPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ +K I A+KEI+EILEQ VHL LFVKV+++WG+DP+ Sbjct: 257 LGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVRENWGNDPE 300 >gi|148560637|ref|YP_001258647.1| GTP-binding protein Era [Brucella ovis ATCC 25840] gi|225627161|ref|ZP_03785199.1| GTP-binding protein Era [Brucella ceti str. Cudo] gi|225852184|ref|YP_002732417.1| GTP-binding protein Era [Brucella melitensis ATCC 23457] gi|254701450|ref|ZP_05163278.1| GTP-binding protein Era [Brucella suis bv. 5 str. 513] gi|254707630|ref|ZP_05169458.1| GTP-binding protein Era [Brucella pinnipedialis M163/99/10] gi|254709788|ref|ZP_05171599.1| GTP-binding protein Era [Brucella pinnipedialis B2/94] gi|254713790|ref|ZP_05175601.1| GTP-binding protein Era [Brucella ceti M644/93/1] gi|254717153|ref|ZP_05178964.1| GTP-binding protein Era [Brucella ceti M13/05/1] gi|256031278|ref|ZP_05444892.1| GTP-binding protein Era [Brucella pinnipedialis M292/94/1] gi|256113202|ref|ZP_05454070.1| GTP-binding protein Era [Brucella melitensis bv. 3 str. Ether] gi|256159388|ref|ZP_05457170.1| GTP-binding protein Era [Brucella ceti M490/95/1] gi|256254686|ref|ZP_05460222.1| GTP-binding protein Era [Brucella ceti B1/94] gi|256264306|ref|ZP_05466838.1| GTP-binding protein Era [Brucella melitensis bv. 2 str. 63/9] gi|260168416|ref|ZP_05755227.1| GTP-binding protein Era [Brucella sp. F5/99] gi|261218968|ref|ZP_05933249.1| GTP-binding protein era [Brucella ceti M13/05/1] gi|261221864|ref|ZP_05936145.1| GTP-binding protein era [Brucella ceti B1/94] gi|261315122|ref|ZP_05954319.1| GTP-binding protein era [Brucella pinnipedialis M163/99/10] gi|261317323|ref|ZP_05956520.1| GTP-binding protein era [Brucella pinnipedialis B2/94] gi|261321533|ref|ZP_05960730.1| GTP-binding protein era [Brucella ceti M644/93/1] gi|261751990|ref|ZP_05995699.1| GTP-binding protein era [Brucella suis bv. 5 str. 513] gi|261757877|ref|ZP_06001586.1| GTP-binding protein Era [Brucella sp. F5/99] gi|265988361|ref|ZP_06100918.1| GTP-binding protein era [Brucella pinnipedialis M292/94/1] gi|265994610|ref|ZP_06107167.1| GTP-binding protein era [Brucella melitensis bv. 3 str. Ether] gi|265997828|ref|ZP_06110385.1| GTP-binding protein era [Brucella ceti M490/95/1] gi|294852026|ref|ZP_06792699.1| GTP-binding protein Era [Brucella sp. NVSL 07-0026] gi|148371894|gb|ABQ61873.1| GTP-binding protein Era [Brucella ovis ATCC 25840] gi|225617996|gb|EEH15040.1| GTP-binding protein Era [Brucella ceti str. Cudo] gi|225640549|gb|ACO00463.1| GTP-binding protein Era [Brucella melitensis ATCC 23457] gi|260920448|gb|EEX87101.1| GTP-binding protein era [Brucella ceti B1/94] gi|260924057|gb|EEX90625.1| GTP-binding protein era [Brucella ceti M13/05/1] gi|261294223|gb|EEX97719.1| GTP-binding protein era [Brucella ceti M644/93/1] gi|261296546|gb|EEY00043.1| GTP-binding protein era [Brucella pinnipedialis B2/94] gi|261304148|gb|EEY07645.1| GTP-binding protein era [Brucella pinnipedialis M163/99/10] gi|261737861|gb|EEY25857.1| GTP-binding protein Era [Brucella sp. F5/99] gi|261741743|gb|EEY29669.1| GTP-binding protein era [Brucella suis bv. 5 str. 513] gi|262552296|gb|EEZ08286.1| GTP-binding protein era [Brucella ceti M490/95/1] gi|262765723|gb|EEZ11512.1| GTP-binding protein era [Brucella melitensis bv. 3 str. Ether] gi|263094579|gb|EEZ18377.1| GTP-binding protein Era [Brucella melitensis bv. 2 str. 63/9] gi|264660558|gb|EEZ30819.1| GTP-binding protein era [Brucella pinnipedialis M292/94/1] gi|294820615|gb|EFG37614.1| GTP-binding protein Era [Brucella sp. NVSL 07-0026] gi|326408684|gb|ADZ65749.1| GTP-binding protein Era [Brucella melitensis M28] gi|326538409|gb|ADZ86624.1| GTP-binding protein Era [Brucella melitensis M5-90] Length = 311 Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 157/284 (55%), Positives = 204/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI E +QIV +DTPG Sbjct: 17 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K ADI+ +++D+ N LL+ + + +L+LNK Sbjct: 77 IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V P LL A+ AN+LV ++TFM+SA G GC D+ YL ++P PW Y DQIS Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKL+L LH+E+PY+S V TE+WEE+KDGS+ I QVIYVER SQKKI+ Sbjct: 197 DMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ +K I A+KEI+EILEQ VHL LFVKV+++WG+DP+ Sbjct: 257 LGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVRENWGNDPE 300 >gi|62289623|ref|YP_221416.1| GTP-binding protein Era [Brucella abortus bv. 1 str. 9-941] gi|82699551|ref|YP_414125.1| GTP-binding protein Era [Brucella melitensis biovar Abortus 2308] gi|189023876|ref|YP_001934644.1| GTP-binding protein Era [Brucella abortus S19] gi|237815118|ref|ZP_04594116.1| GTP-binding protein Era [Brucella abortus str. 2308 A] gi|254688938|ref|ZP_05152192.1| GTP-binding protein Era [Brucella abortus bv. 6 str. 870] gi|254693420|ref|ZP_05155248.1| GTP-binding protein Era [Brucella abortus bv. 3 str. Tulya] gi|254697073|ref|ZP_05158901.1| GTP-binding protein Era [Brucella abortus bv. 2 str. 86/8/59] gi|254729969|ref|ZP_05188547.1| GTP-binding protein Era [Brucella abortus bv. 4 str. 292] gi|256257186|ref|ZP_05462722.1| GTP-binding protein Era [Brucella abortus bv. 9 str. C68] gi|260545622|ref|ZP_05821363.1| GTP-binding protein Era [Brucella abortus NCTC 8038] gi|260754425|ref|ZP_05866773.1| GTP-binding protein era [Brucella abortus bv. 6 str. 870] gi|260757644|ref|ZP_05869992.1| GTP-binding protein era [Brucella abortus bv. 4 str. 292] gi|260761471|ref|ZP_05873814.1| GTP-binding protein era [Brucella abortus bv. 2 str. 86/8/59] gi|260883453|ref|ZP_05895067.1| GTP-binding protein era [Brucella abortus bv. 9 str. C68] gi|261213671|ref|ZP_05927952.1| GTP-binding protein era [Brucella abortus bv. 3 str. Tulya] gi|297248034|ref|ZP_06931752.1| GTP-binding protein Era [Brucella abortus bv. 5 str. B3196] gi|62195755|gb|AAX74055.1| Era, GTP-binding protein Era [Brucella abortus bv. 1 str. 9-941] gi|82615652|emb|CAJ10639.1| Serpin:Elongation factor, GTP-binding:ATP/GTP-binding site motif A (P-loop):Type 2 KH domain:Small GTP-binding protein domain [Brucella melitensis biovar Abortus 2308] gi|189019448|gb|ACD72170.1| GTP-binding protein Era [Brucella abortus S19] gi|237789955|gb|EEP64165.1| GTP-binding protein Era [Brucella abortus str. 2308 A] gi|260097029|gb|EEW80904.1| GTP-binding protein Era [Brucella abortus NCTC 8038] gi|260667962|gb|EEX54902.1| GTP-binding protein era [Brucella abortus bv. 4 str. 292] gi|260671903|gb|EEX58724.1| GTP-binding protein era [Brucella abortus bv. 2 str. 86/8/59] gi|260674533|gb|EEX61354.1| GTP-binding protein era [Brucella abortus bv. 6 str. 870] gi|260872981|gb|EEX80050.1| GTP-binding protein era [Brucella abortus bv. 9 str. C68] gi|260915278|gb|EEX82139.1| GTP-binding protein era [Brucella abortus bv. 3 str. Tulya] gi|297175203|gb|EFH34550.1| GTP-binding protein Era [Brucella abortus bv. 5 str. B3196] Length = 311 Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 157/284 (55%), Positives = 204/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI E +QIV +DTPG Sbjct: 17 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K ADI+ +++D+ N LL+ + + +L+LNK Sbjct: 77 IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDIRQKKVLVLNK 136 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V P LL A+ AN+LV ++TFM+SA G GC D+ YL ++P PW Y DQIS Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKL+L LH+E+PY+S V TE+WEE+KDGS+ I QVIYVER SQKKI+ Sbjct: 197 DMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ +K I A+KEI+EILEQ VHL LFVKV+++WG+DP+ Sbjct: 257 LGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVRENWGNDPE 300 >gi|254703996|ref|ZP_05165824.1| GTP-binding protein Era [Brucella suis bv. 3 str. 686] gi|261754649|ref|ZP_05998358.1| GTP-binding protein era [Brucella suis bv. 3 str. 686] gi|261744402|gb|EEY32328.1| GTP-binding protein era [Brucella suis bv. 3 str. 686] Length = 311 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 156/284 (54%), Positives = 204/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI E +QIV +DTPG Sbjct: 17 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K ADI+ +++D+ N LL+ + + +L+LNK Sbjct: 77 IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V P LL A+ AN+LV ++TFM+SA G GC D+ YL ++P PW Y DQIS Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKL+L LH+E+PY+S V TE+WEE+K+GS+ I QVIYVER SQKKI+ Sbjct: 197 DIPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKNGSVRIEQVIYVERESQKKIV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ +K I A+KEI+EILEQ VHL LFVKV+++WG+DP+ Sbjct: 257 LGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVRENWGNDPE 300 >gi|17987569|ref|NP_540203.1| GTP-binding protein Era [Brucella melitensis bv. 1 str. 16M] gi|256044359|ref|ZP_05447263.1| GTP-binding protein Era [Brucella melitensis bv. 1 str. Rev.1] gi|260563711|ref|ZP_05834197.1| GTP-binding protein era [Brucella melitensis bv. 1 str. 16M] gi|265990774|ref|ZP_06103331.1| GTP-binding protein era [Brucella melitensis bv. 1 str. Rev.1] gi|21263580|sp|Q8YG75|ERA_BRUME RecName: Full=GTPase Era gi|17983273|gb|AAL52467.1| gtp-binding protein era [Brucella melitensis bv. 1 str. 16M] gi|260153727|gb|EEW88819.1| GTP-binding protein era [Brucella melitensis bv. 1 str. 16M] gi|263001558|gb|EEZ14133.1| GTP-binding protein era [Brucella melitensis bv. 1 str. Rev.1] Length = 311 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 156/284 (54%), Positives = 202/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI E +QIV +DTPG Sbjct: 17 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K ADI+ +++D+ N LL+ + + +L+LNK Sbjct: 77 IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V P LL A+ AN LV ++TFM+SA G GC D+ YL ++P PW Y DQIS Sbjct: 137 VDRVDPPVLLSLAQKANGLVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKL+L LH+E+PY+S V TE+WEE+KDGS+ I QVIYVER SQKKI+ Sbjct: 197 DMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ +K I A+KEI+EILEQ VH LFVKV+++WG+DP+ Sbjct: 257 LGHKGETVKAIGQAARKEISEILEQTVHQFLFVKVRENWGNDPE 300 >gi|256369100|ref|YP_003106608.1| GTP-binding protein Era [Brucella microti CCM 4915] gi|255999260|gb|ACU47659.1| GTP-binding protein Era [Brucella microti CCM 4915] Length = 311 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 156/284 (54%), Positives = 203/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI E + IV +DTPG Sbjct: 17 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPALIVLVDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K ADI+ +++D+ N LL+ + + +L+LNK Sbjct: 77 IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V P LL A+ AN+LV ++TFM+SA G GC D+ YL ++P PW Y DQIS Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGPWYYPEDQIS 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKL+L LH+E+PY+S V TE+WEE+KDGS+ I QVIYVER SQKKI+ Sbjct: 197 DMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ +K I A+KEI+EILEQ VHL LFVKV+++WG+DP+ Sbjct: 257 LGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVRENWGNDPE 300 >gi|13476443|ref|NP_108013.1| GTP-binding protein Era [Mesorhizobium loti MAFF303099] gi|21263601|sp|Q985A5|ERA_RHILO RecName: Full=GTPase Era gi|14027204|dbj|BAB54158.1| GTP-binding protein; Era [Mesorhizobium loti MAFF303099] Length = 310 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 162/284 (57%), Positives = 201/284 (70%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 + SG VAL+GA NAGKSTLVN+ VGAKVSIVTHKVQTTR+IVRGI + +QIVF+DTPG Sbjct: 16 THSGFVALIGAPNAGKSTLVNQLVGAKVSIVTHKVQTTRAIVRGIATHDNAQIVFVDTPG 75 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K M+ +W K ADIV L++D+ R ++ + +L+ + + LILNK Sbjct: 76 IFKPKRRLDTAMVTTAWGGAKDADIVLLLIDAERGIRGDADAILERLKDVRQPMALILNK 135 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D VK E LL + AN+ V ++TFMVSA G GC D+L+YL LP PW Y DQIS Sbjct: 136 VDRVKHETLLALSAAANEKVPFKRTFMVSALTGSGCKDLLDYLAQALPAGPWYYPEDQIS 195 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKL+L LH+E+PYSS + TEKWEEK DGS+ I Q IYVER SQKKI+ Sbjct: 196 DLPMRQLAAEITREKLYLRLHQELPYSSHIETEKWEEKPDGSVRIDQTIYVERDSQKKIV 255 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ I+ I A+ EIA ILEQ VHL LFVKV+++WG DP+ Sbjct: 256 LGHKGETIRAIGQAARMEIAGILEQKVHLFLFVKVRENWGDDPE 299 >gi|256060790|ref|ZP_05450952.1| GTP-binding protein Era [Brucella neotomae 5K33] gi|261324781|ref|ZP_05963978.1| GTP-binding protein era [Brucella neotomae 5K33] gi|261300761|gb|EEY04258.1| GTP-binding protein era [Brucella neotomae 5K33] Length = 311 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 156/284 (54%), Positives = 203/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI E +QIV +DTPG Sbjct: 17 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIFIEGPAQIVLVDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K ADI+ +++D+ N LL+ + + +L+LNK Sbjct: 77 IFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAEALLESMKDVRQKKVLVLNK 136 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V P LL A+ AN+LV ++TFM+SA G GC D+ YL ++P W Y DQIS Sbjct: 137 VDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAKYLAESVPNGLWYYPEDQIS 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKL+L LH+E+PY+S V TE+WEE+KDGS+ I QVIYVER SQKKI+ Sbjct: 197 DMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ +K I A+KEI+EILEQ VHL LFVKV+++WG+DP+ Sbjct: 257 LGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVRENWGNDPE 300 >gi|163760594|ref|ZP_02167675.1| GTP-binding protein Era [Hoeflea phototrophica DFL-43] gi|162282209|gb|EDQ32499.1| GTP-binding protein Era [Hoeflea phototrophica DFL-43] Length = 312 Score = 328 bits (840), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 160/284 (56%), Positives = 204/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VGAKVSIV+HKVQTTR+IVRGI + +QIVF+DTPG Sbjct: 18 TRSGFVALIGAPNAGKSTLVNQLVGAKVSIVSHKVQTTRAIVRGIAIHERAQIVFIDTPG 77 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W K D+V +++D+ R +K + LL +A R IL+LNK Sbjct: 78 IFAPKRRLDRAMVTTAWGGAKDGDMVLVLIDAERGIKGDAEALLDSLADVHQRKILVLNK 137 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D VK + LL ++ ++TFM+SA G GC D+++YL TLP PW Y DQIS Sbjct: 138 VDRVKRDTLLALTAQCHEKAQFDETFMISALTGSGCADLMDYLARTLPEGPWYYPEDQIS 197 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKL+L LH+E+PY+S V TE WEEKKDGS+ I QVIYVER SQKKI+ Sbjct: 198 DLPMRQLAAEITREKLYLRLHQELPYASHVETESWEEKKDGSVRIEQVIYVERDSQKKIV 257 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ IK I ++KEIA+ILEQ VHL LFVKV+ +WG+DP+ Sbjct: 258 LGHKGETIKAIGQASRKEIADILEQKVHLFLFVKVRSNWGNDPE 301 >gi|260462322|ref|ZP_05810530.1| GTP-binding protein Era [Mesorhizobium opportunistum WSM2075] gi|259031816|gb|EEW33084.1| GTP-binding protein Era [Mesorhizobium opportunistum WSM2075] Length = 306 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 162/284 (57%), Positives = 200/284 (70%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 + SG VAL+GA NAGKSTLVN+ VGAKVSIVTHKVQTTR+IVRGI +QIVF+DTPG Sbjct: 12 THSGFVALIGAPNAGKSTLVNQLVGAKVSIVTHKVQTTRAIVRGIAMHDNAQIVFVDTPG 71 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K M+ +W K ADIV L++D+ R ++ + +L+ + + LILNK Sbjct: 72 IFKPKRRLDTAMVTTAWGGAKDADIVLLLIDAERGIRGDADAILERLKDVRQPMALILNK 131 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D VK E LL + AN+ V ++TFMVSA G GC D+L+YL LP PW Y DQIS Sbjct: 132 VDRVKHETLLALSAAANEKVPFKRTFMVSALTGSGCKDLLDYLAQALPAGPWYYPEDQIS 191 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKL+L LH+E+PYSS + TEKWEEK DGS+ I Q IYVER SQKKI+ Sbjct: 192 DLPMRQLAAEITREKLYLRLHQELPYSSHIETEKWEEKPDGSVRIDQTIYVERDSQKKIV 251 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ I+ I A+ EIA ILEQ VHL LFVKV+++WG DP+ Sbjct: 252 LGHKGETIRAIGQAARMEIAGILEQKVHLFLFVKVRENWGDDPE 295 >gi|319784503|ref|YP_004143979.1| GTP-binding protein Era [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170391|gb|ADV13929.1| GTP-binding protein Era [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 308 Score = 322 bits (824), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 162/284 (57%), Positives = 203/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 + SG VAL+GA NAGKSTLVN+ VGAKVSIVTHKVQTTR+IVRGI + +QIVF+DTPG Sbjct: 14 THSGFVALIGAPNAGKSTLVNQLVGAKVSIVTHKVQTTRAIVRGIATHDNAQIVFVDTPG 73 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K M+ +W K ADIV L++D+ R ++ + +L+ + ++LILNK Sbjct: 74 IFKPKRRLDTAMVTTAWGGAKDADIVLLLIDAERGIRGDADAILERLKDVRQPMVLILNK 133 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D VK E LL + AN+ V ++TFMVSA G GC DVL+YL +LP+ P Y DQIS Sbjct: 134 VDRVKHEALLALSAAANERVPFKRTFMVSALTGSGCKDVLDYLAESLPVGPRYYPEDQIS 193 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKL+L LH+E+PYSS + TEKWEEK DGS+ I Q IYVER SQKKI+ Sbjct: 194 DLPMRQLAAEITREKLYLRLHQELPYSSHIETEKWEEKPDGSVRIDQTIYVERDSQKKIV 253 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ I+ I A+ EIA ILEQ VHL LFVKV+++WG DP+ Sbjct: 254 LGHKGETIRAIGQAARMEIAGILEQKVHLFLFVKVRENWGDDPE 297 >gi|39935764|ref|NP_948040.1| GTP-binding protein Era [Rhodopseudomonas palustris CGA009] gi|39649617|emb|CAE28139.1| possible GTP-binding protein Era [Rhodopseudomonas palustris CGA009] Length = 308 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 152/295 (51%), Positives = 202/295 (68%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 EH+D +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E Sbjct: 1 MMAEHEDAATAATRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIE 60 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 SQI+ +DTPGIF K + M++ +WS ADIVC+++D+ + D+L +A Sbjct: 61 SGSQIILVDTPGIFAPKRRLDRAMVKTAWSGAHDADIVCVLLDARAGINEQAEDILANLA 120 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +L+LNKID + E+LL A+ AN+ + ++TFMVSA G G DD+ L + +P Sbjct: 121 NVDRPKLLVLNKIDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDLRKALAAQVP 180 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 P+ Y DQ+SD P+ H AEITREK+F LH+E+PY S V T+ W E+KDGS+ I Q Sbjct: 181 PGPFHYPEDQMSDAPLRHLAAEITREKIFRQLHQELPYQSTVETDTWTERKDGSVKIEQT 240 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I+VER SQ+KI+LGK G IK I EA+KEI EILEQPVHL LFVKV++DWG+DP Sbjct: 241 IFVERESQRKIVLGKGGATIKAIGAEARKEIGEILEQPVHLFLFVKVREDWGNDP 295 >gi|192291351|ref|YP_001991956.1| GTP-binding protein Era [Rhodopseudomonas palustris TIE-1] gi|192285100|gb|ACF01481.1| GTP-binding protein Era [Rhodopseudomonas palustris TIE-1] Length = 307 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 152/292 (52%), Positives = 202/292 (69%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 EH+D +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E S Sbjct: 3 EHEDAATAATRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGS 62 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 QI+ +DTPGIF K + M++ +WS ADIVC+++D+ + D+L +A Sbjct: 63 QIILVDTPGIFAPKRRLDRAMVKTAWSGAHDADIVCVLLDARAGINEQAEDILANLANVD 122 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +L+LNKID + E+LL A+ AN+ + ++TFMVSA G G DD+ L + +P P Sbjct: 123 RPKLLVLNKIDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDLRKALAAQVPPGP 182 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + Y DQ+SD P+ H AEITREK+F LH+E+PY S V T+ W E+KDGS+ I Q I+V Sbjct: 183 FHYPEDQMSDAPLRHLAAEITREKIFRQLHQELPYQSTVETDTWTERKDGSVKIEQTIFV 242 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 ER SQ+KI+LGK G IK I EA+KEI EILEQPVHL LFVKV++DWG+DP Sbjct: 243 ERESQRKIVLGKGGATIKAIGAEARKEIGEILEQPVHLFLFVKVREDWGNDP 294 >gi|254469267|ref|ZP_05082672.1| GTP-binding protein Era [Pseudovibrio sp. JE062] gi|211961102|gb|EEA96297.1| GTP-binding protein Era [Pseudovibrio sp. JE062] Length = 320 Score = 318 bits (814), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 152/288 (52%), Positives = 201/288 (69%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V +NSR+G VAL+GA NAGKSTL+N+ VG KVSIVTHKVQTTR+IVRG+ E +SQ++F+ Sbjct: 22 VNENSRAGFVALIGAPNAGKSTLLNQLVGTKVSIVTHKVQTTRAIVRGVAIEDDSQVIFV 81 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGIF K + M+ +W K AD+V +++D+ + + + +L E+ +L Sbjct: 82 DTPGIFRPKRRLDRAMVDTAWGGAKDADVVAVLIDAKKGINEAVERILNELEHIKLPKVL 141 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ILNKID K E+LLE A AN+ ++TFMVSA G G D+L Y +P PW+Y Sbjct: 142 ILNKIDITKREQLLELAAKANEYTKFDQTFMVSAINGSGTKDILKYFSEQMPKGPWLYPE 201 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ SD+P+ AEITREKL+L LH+E+PY S V T+KWE+KKDGSI I Q I+VER SQ Sbjct: 202 DQASDIPLRMLAAEITREKLYLRLHEELPYISTVETDKWEDKKDGSIRIEQTIFVERDSQ 261 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I+LGKNGQ IK IS A++E+ E E VHL +FVKV+++W DP+ Sbjct: 262 KSIVLGKNGQTIKAISKAAREELTEAFETKVHLFVFVKVRENWSDDPE 309 >gi|328543512|ref|YP_004303621.1| GTP-binding protein Era [polymorphum gilvum SL003B-26A1] gi|326413256|gb|ADZ70319.1| GTP-binding protein Era [Polymorphum gilvum SL003B-26A1] Length = 318 Score = 318 bits (814), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 150/283 (53%), Positives = 197/283 (69%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G +AL+GA NAGKSTL+N+ VG KVSIVTHKVQTTR+IVRGI +Q+VF+DTPGI Sbjct: 25 RAGFIALIGAPNAGKSTLLNQLVGTKVSIVTHKVQTTRAIVRGIAMHGSAQLVFVDTPGI 84 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F K + M+ +W + AD++ L++D+ + L + +L +A +LILNKI Sbjct: 85 FQPKRRLDRAMVDTAWGGARDADVIALLIDARKGLSEEVETILDRLADLRGPRVLILNKI 144 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E+LL A+ AN+ V E+TFMVSA G G D+L+Y + +P PW+Y D+ SD Sbjct: 145 DVARREKLLTLAQAANERVAFERTFMVSALTGDGVADMLDYFATKVPAGPWLYPEDEASD 204 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 LP+ AEITREKLF LH+EIPY S V TE WEE+KDGS+ I Q IYVER SQK I+L Sbjct: 205 LPLRLLAAEITREKLFERLHEEIPYVSTVETELWEERKDGSVRIEQTIYVERDSQKAIVL 264 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 GK G IK IS A+ E+ EI+E+PVHL LFVKV+++W DP+ Sbjct: 265 GKRGATIKAISQAARAELLEIVERPVHLFLFVKVRENWADDPE 307 >gi|316934143|ref|YP_004109125.1| GTP-binding protein Era [Rhodopseudomonas palustris DX-1] gi|315601857|gb|ADU44392.1| GTP-binding protein Era [Rhodopseudomonas palustris DX-1] Length = 308 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 150/295 (50%), Positives = 201/295 (68%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 EH+D +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E Sbjct: 1 MMAEHEDAAPAATRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIE 60 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 SQI+ +DTPGIF K + M++ +WS AD+VC+++D+ + D+L +A Sbjct: 61 DASQIILVDTPGIFAPKRRLDRAMVKTAWSGAHDADLVCVLLDARAGINEQAEDILANLA 120 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +L+LNKID + E+LL A+ AN+ + ++TFMVSA G G DD+ L + +P Sbjct: 121 NVDRPKLLVLNKIDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDLRKALAAQVP 180 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 P+ Y DQ+SD P+ H AEITREK+F LH+E+PY S V T+ W E+KDGS+ I Q Sbjct: 181 EGPFHYPEDQMSDAPLRHLAAEITREKIFRQLHQELPYQSTVETDTWTERKDGSVKIEQT 240 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I+VER SQ+KI+LGK G IK I EA+KEI ILEQPVHL LFVKV++DWG+DP Sbjct: 241 IFVERESQRKIVLGKGGATIKAIGAEARKEIGAILEQPVHLFLFVKVREDWGNDP 295 >gi|254503598|ref|ZP_05115749.1| GTP-binding protein Era [Labrenzia alexandrii DFL-11] gi|222439669|gb|EEE46348.1| GTP-binding protein Era [Labrenzia alexandrii DFL-11] Length = 337 Score = 315 bits (807), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 148/285 (51%), Positives = 200/285 (70%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++++G VAL+GA NAGKSTL+N+ VG KVSIVTHKVQTTRSIVRG+ +Q+VF+DTP Sbjct: 42 DTKAGFVALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRSIVRGVAMHGTAQLVFIDTP 101 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + M+ +W + AD++ L++D+ + + + +LK + +S+ +LILN Sbjct: 102 GIFKPKRRLDRAMVDTAWGGARDADVIALLIDARKGIDEEVEQILKRLKGQSAPKVLILN 161 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K D E+LL+ A+ AN+ + E+TFMVSA G G +L+Y S +P PW+Y DQ Sbjct: 162 KTDVANREKLLKLAQKANEYLEFEETFMVSALTGDGTQQILDYFASKMPDGPWLYPEDQP 221 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SDLP+ AEITREKLF LH+E+PY S V TE+WE KKDGS I Q IYVER SQK I Sbjct: 222 SDLPLRILAAEITREKLFERLHQELPYISTVETERWETKKDGSARIEQTIYVERDSQKSI 281 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +LGK GQ IK IS ++ EI++I+E PVHL LFVKV+++W DP+ Sbjct: 282 VLGKKGQTIKQISQASRSEISDIIEAPVHLFLFVKVRENWADDPE 326 >gi|118587960|ref|ZP_01545370.1| GTP-binding protein Era [Stappia aggregata IAM 12614] gi|118439582|gb|EAV46213.1| GTP-binding protein Era [Stappia aggregata IAM 12614] Length = 335 Score = 314 bits (805), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 146/285 (51%), Positives = 202/285 (70%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++++G +AL+GA NAGKSTL+N+ VG KVSIVTHKVQTTR+IVRG+ +Q+VF+DTP Sbjct: 40 DTKAGFIALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRTIVRGVAMHGAAQLVFIDTP 99 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + M+ +W + AD++ L+VD+ + L + ++LK ++ + + +LILN Sbjct: 100 GIFKPKRRLDRAMVDTAWGGARDADLIALLVDARKGLTEEVENILKRLSSQQAPKVLILN 159 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K D K E+LL+ A+ N+ V E+TFMVSA G G +L+Y S +P PW++ DQ Sbjct: 160 KTDVAKREKLLQLAQKINEFVRFEETFMVSALTGDGTQTILDYFASKVPDGPWLFPEDQP 219 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SDLP+ AEITREKLF LH+E+PY S V TE+W+ +KDGS I Q IYVER SQK I Sbjct: 220 SDLPLRILAAEITREKLFERLHEELPYISTVETEQWQARKDGSARIEQTIYVERDSQKSI 279 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +LGK GQ IK IS A++E++EI+E PVHL LFVKV+++W DP+ Sbjct: 280 VLGKRGQTIKAISQAAREELSEIIEAPVHLFLFVKVRENWADDPE 324 >gi|90420863|ref|ZP_01228768.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90334838|gb|EAS48610.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 320 Score = 312 bits (799), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 147/285 (51%), Positives = 198/285 (69%), Gaps = 1/285 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI +QIVF+DTPG Sbjct: 25 TRSGFVALLGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIAMRDRTQIVFVDTPG 84 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +F K + M+R +WS + ADIV ++D+ R + + +L+ + +L+LNK Sbjct: 85 VFAPKRRLDRAMVRTAWSGARDADIVLAIIDADRGINEEVETILERLKDVKQPKVLLLNK 144 Query: 140 IDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D ++ +RLL +I + V ++ FM+SA G GC D+++YL LP PW Y DQI Sbjct: 145 VDQMRRDRLLGLTQQITERGVAFDEIFMISALNGSGCGDLMDYLAKALPEGPWYYPEDQI 204 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +DLP+ AEITREKL+L LH+E+PYSS V TE WE ++DGS+ I Q IYVER SQK+I Sbjct: 205 TDLPLRQLAAEITREKLYLRLHQELPYSSHVETELWETRQDGSVRIEQTIYVERDSQKRI 264 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ++G NG+ IK I A+KEI E +Q VHL LFVKV+ +WG DP+ Sbjct: 265 VIGHNGETIKAIGSAARKEITEAADQKVHLFLFVKVRGNWGDDPE 309 >gi|158423629|ref|YP_001524921.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158330518|dbj|BAF88003.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 311 Score = 312 bits (799), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 149/284 (52%), Positives = 198/284 (69%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VAL+GA NAGKSTL N+ VG KVSIV+HKVQTTR+IVRGI E SQ++ +DTPG Sbjct: 15 TRCGFVALLGAPNAGKSTLTNQLVGTKVSIVSHKVQTTRAIVRGIALEGPSQVILVDTPG 74 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF+ K + M+ +W++ AD+V L+VD++R + N+ +LK +A+ LILNK Sbjct: 75 IFSPKRRLERAMVNTAWTSASDADVVALLVDANRGIDENVESILKPLAEVKRPRALILNK 134 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID ++ + LLE A+ + + E+ FMVSA KG G DDV + +P PW+Y DQIS Sbjct: 135 IDMIRRDTLLELAQKLTERLSFERVFMVSALKGDGVDDVRTWFAEKVPFGPWLYPEDQIS 194 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D PM AEITREKLFL LH E+PY S V T+ W+E +D S+ I Q I+VER SQ+KI+ Sbjct: 195 DAPMRMLAAEITREKLFLRLHDELPYRSTVETDSWKELRDKSVRIEQTIFVERESQRKIV 254 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK G IK IS E++ EI+EI+E PVHL LFVKV+++W DP+ Sbjct: 255 LGKAGATIKAISSESRAEISEIIEAPVHLFLFVKVRENWADDPE 298 >gi|307946584|ref|ZP_07661919.1| GTP-binding protein Era [Roseibium sp. TrichSKD4] gi|307770248|gb|EFO29474.1| GTP-binding protein Era [Roseibium sp. TrichSKD4] Length = 313 Score = 311 bits (796), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 145/284 (51%), Positives = 203/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G VAL+GA NAGKSTL+N+ VG KVSIVTHKVQTTR+IVRGI + SQ++F+DTPG Sbjct: 19 TRAGFVALIGAPNAGKSTLLNQLVGTKVSIVTHKVQTTRAIVRGIAMHEASQLIFVDTPG 78 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +WS + AD+ L++D+ + + + D++ ++ +LILNK Sbjct: 79 IFKPKRRLDRAMVDTAWSGARDADLTALLIDARKGIDEEVEDIMSRLSDLPGDKVLILNK 138 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + ++LL+ A+ A++++ ++TFMVSA G G +L++ +P PW+Y DQ S Sbjct: 139 IDVTQRDQLLQLAQKAHEILPFKETFMVSALNGDGVASILDHFAKAVPEGPWLYPEDQPS 198 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLF LH+E+PY S V TE+W+ KKDGS+ I Q IYVER SQK I+ Sbjct: 199 DLPMRLLAAEITREKLFERLHQELPYISTVETEQWQNKKDGSVRIEQTIYVERDSQKSIV 258 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK GQ IK IS A++E+A+I+E PVHL LFVKV+++W +DP+ Sbjct: 259 LGKRGQTIKAISQSAREELADIVEAPVHLFLFVKVRENWANDPE 302 >gi|298291622|ref|YP_003693561.1| GTP-binding protein Era [Starkeya novella DSM 506] gi|296928133|gb|ADH88942.1| GTP-binding protein Era [Starkeya novella DSM 506] Length = 304 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 150/285 (52%), Positives = 197/285 (69%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R G VAL+GA NAGKSTL N VG KVSIV+HKVQTTRS+VRGI E +QI+ +DTP Sbjct: 7 DTRCGFVALIGAPNAGKSTLTNALVGTKVSIVSHKVQTTRSLVRGIALEGTTQIILVDTP 66 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K K M+R +WS AD V L+VD+ + ++ ++K +A ++LN Sbjct: 67 GIFAPKRRLEKAMVRSAWSGAGDADAVVLLVDARAGMTEDVEAIIKGLADVKRPRAILLN 126 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID VK + LLE A +L+ ++ FMVSA G G ++ +L TLPL PW+Y DQI Sbjct: 127 KIDLVKRDSLLELAAKVAELISFDRLFMVSAQNGDGLKELREWLAQTLPLGPWLYPEDQI 186 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD PM AEITREKLF LH+E+PY S V T+ W+E+KDGS+ I Q I+VER SQ+KI Sbjct: 187 SDAPMRSLAAEITREKLFHRLHEELPYRSTVETDSWQERKDGSVRIEQTIFVERESQRKI 246 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +LGK G+ IK IS+ A+KE+ EI+E PVHL LFVKV+++W DP+ Sbjct: 247 VLGKGGETIKAISMAARKELTEIVEAPVHLFLFVKVRENWADDPE 291 >gi|218677582|ref|ZP_03525479.1| GTP-binding protein Era [Rhizobium etli CIAT 894] Length = 301 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 153/262 (58%), Positives = 191/262 (72%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPGIF Sbjct: 23 SGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPGIF 82 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + M+ +W K AD++ L++DS R L+ + +L+ + + IL+LNKID Sbjct: 83 KPRRRLDRAMVTSAWGGAKDADLIVLLIDSERGLRGDAEAILEGLKEVRQPKILLLNKID 142 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V E LL A AN+ + E+TFM+SA G GCDDV++YL +TLP PW Y DQISDL Sbjct: 143 RVNREDLLALAAAANEKIAFERTFMISAENGSGCDDVMDYLAATLPEGPWYYPEDQISDL 202 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 PM AEITREKLFL LH+E+PY+S V TEKWEE+KDGS+ I QVIY+ER SQKKI LG Sbjct: 203 PMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYLERDSQKKIALG 262 Query: 262 KNGQNIKTISLEAKKEIAEILE 283 K G+ IK IS ++KE++EILE Sbjct: 263 KGGETIKAISTASRKELSEILE 284 >gi|218671650|ref|ZP_03521319.1| GTP-binding protein Era [Rhizobium etli GR56] Length = 274 Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 149/256 (58%), Positives = 184/256 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 + SG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPG Sbjct: 19 THSGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPG 78 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD++ L++DS R L+ + +L+ + + IL+LNK Sbjct: 79 IFKPRRRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVQQPKILVLNK 138 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V E LL A AN+ + E+TFM+SA G GCDDV++YL +TLP PW Y DQIS Sbjct: 139 IDRVNREDLLALAASANEKIAFERTFMISAENGSGCDDVMDYLAATLPEGPWYYPEDQIS 198 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLFL LH+E+PYSS V TEKWEE+KDGS+ I QVIYVER SQKKI Sbjct: 199 DLPMRQLAAEITREKLFLRLHQELPYSSHVETEKWEERKDGSVRIEQVIYVERDSQKKIA 258 Query: 260 LGKNGQNIKTISLEAK 275 LGK G+ IK IS ++ Sbjct: 259 LGKGGETIKAISTASR 274 >gi|218515109|ref|ZP_03511949.1| GTP-binding protein Era [Rhizobium etli 8C-3] Length = 272 Score = 305 bits (780), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 149/252 (59%), Positives = 182/252 (72%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 + SG VAL+G TNAGKSTLVNR VGAKVSIV+HKVQTTR+IVRGI +QIVF+DTPG Sbjct: 19 THSGFVALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAIVRGIAIHDNAQIVFMDTPG 78 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD++ L++DS R L+ + +L+ + + IL+LNK Sbjct: 79 IFKPRRRLDRAMVTSAWGGAKDADLIMLLIDSERGLRGDAEAILEGLKEVRQPKILVLNK 138 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V E LL A AN+ + E+TFM+SA G GCDDV++YL +TLP PW Y DQIS Sbjct: 139 IDRVNREDLLALAASANEKIAFERTFMISAENGSGCDDVMDYLAATLPEGPWYYPEDQIS 198 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLPM AEITREKLFL LH+E+PYSS V TEKWEE+KDGS+ I QVIYVER SQKKI Sbjct: 199 DLPMRQLAAEITREKLFLRLHQELPYSSHVETEKWEERKDGSVRIEQVIYVERDSQKKIA 258 Query: 260 LGKNGQNIKTIS 271 LGK G+ IK IS Sbjct: 259 LGKGGETIKAIS 270 >gi|154247805|ref|YP_001418763.1| GTP-binding protein Era [Xanthobacter autotrophicus Py2] gi|154161890|gb|ABS69106.1| GTP-binding protein Era [Xanthobacter autotrophicus Py2] Length = 385 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 150/289 (51%), Positives = 199/289 (68%), Gaps = 2/289 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++ +R G VAL+GA NAGKSTL N+ VG KVSIV+HKVQTTR+IVRGI + +Q+V + Sbjct: 85 LEGPTRCGFVALLGAPNAGKSTLTNQLVGTKVSIVSHKVQTTRAIVRGIALDGAAQLVLV 144 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGIF+ K + M+ +W+ AD++ L+VD+ R L +I LL +++ L Sbjct: 145 DTPGIFSPKRRLERAMVSSAWTHAADADVIALLVDAKRGLDEDIEALLAPLSQIHKPRAL 204 Query: 136 ILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ILNKID ++ + LL A+I KL F ++ FMVSA G G DV + +PL+PW+Y Sbjct: 205 ILNKIDIIRRDTLLALAAQINEKLAF-DRVFMVSALTGDGVADVRRWFAEQVPLSPWLYP 263 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 DQ+SD PM AEITREK+FL LH E+PY S V TE W+E ++GS+ I Q IYVER S Sbjct: 264 EDQVSDAPMRMLAAEITREKMFLRLHDELPYRSTVETESWKELRNGSVRIEQTIYVERES 323 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 Q+KI+LGK G IKTIS E++ EIA I+EQPVHL LFVKV++ W DP+ Sbjct: 324 QRKIVLGKGGSTIKTISSESRAEIAGIIEQPVHLFLFVKVRESWADDPE 372 >gi|121602370|ref|YP_988790.1| GTP-binding protein Era [Bartonella bacilliformis KC583] gi|120614547|gb|ABM45148.1| GTP-binding protein Era [Bartonella bacilliformis KC583] Length = 301 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 149/284 (52%), Positives = 191/284 (67%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G V+LVG NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGIV +++QIV +DTPG Sbjct: 7 TRFGFVSLVGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIVIHEKTQIVLVDTPG 66 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +WS I+ AD + +++D L ++ +L +A IL+LNK Sbjct: 67 IFRPRKRLERAMVSAAWSGIRDADALLVLIDVQNGLSDEVNAMLDNLANIKQDKILVLNK 126 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V LL N+ V +TFM+SA G GC D+L+YL + + PW Y DQIS Sbjct: 127 IDTVAKSSLLALTAKINERVNFLRTFMISALNGSGCKDLLDYLSTMMQPGPWCYPEDQIS 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKLF LH+E+PY+S V TE WEE+ DGS+ I QVIYVER SQKKI+ Sbjct: 187 DMPMRQLAAEITREKLFFRLHEELPYASTVETENWEERPDGSVKINQVIYVERESQKKIL 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G IK I A+KE+ EILEQ V L LFVKV+ +W DP+ Sbjct: 247 LGTKGHTIKAIGQAARKELTEILEQRVSLFLFVKVRDNWDTDPE 290 >gi|114706261|ref|ZP_01439163.1| GTP-binding protein Era [Fulvimarina pelagi HTCC2506] gi|114538122|gb|EAU41244.1| GTP-binding protein Era [Fulvimarina pelagi HTCC2506] Length = 318 Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 146/285 (51%), Positives = 200/285 (70%), Gaps = 2/285 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+GA NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGI + +QIVF+DTPG Sbjct: 24 TRSGFVALIGAPNAGKSTLVNQLVGTKVSIVTHKVQTTRALVRGIAIKDRTQIVFVDTPG 83 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +F+ + + M++ +WS K ADI+ +VD+ R + + +L+ + +L+LNK Sbjct: 84 VFSPRRRLDRAMVKTAWSGAKDADILLAIVDAERGVSPELELILERLKDVRQTKVLLLNK 143 Query: 140 IDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID +K ++LL +I +K+VF ++ FM+SA G GC D++ +L LP PW Y DQI Sbjct: 144 IDRIKRDKLLGLTQQIVDKVVF-DQVFMISALDGSGCKDLMTWLAGALPEGPWYYPEDQI 202 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SDLP+ AEITREK+FL LH+E+PY+S V TE WE +KDGS+ I Q IYVER SQK I Sbjct: 203 SDLPLRQLAAEITREKVFLRLHQELPYASTVETELWETRKDGSVRIEQTIYVERDSQKAI 262 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +LG G+ IK I A+++I E + VHL LFVKV+++WG DP+ Sbjct: 263 VLGHKGETIKAIGQAARRDITEAADCKVHLFLFVKVRENWGDDPE 307 >gi|115525027|ref|YP_781938.1| GTP-binding protein Era [Rhodopseudomonas palustris BisA53] gi|115518974|gb|ABJ06958.1| GTP-binding protein Era [Rhodopseudomonas palustris BisA53] Length = 313 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 146/300 (48%), Positives = 204/300 (68%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 M E T N ++ G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++R Sbjct: 1 MAEATNENSAATSEGGDTSCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIR 60 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 GIV + ++QI+ +DTPGIF K + M+ +WS AD+VC+++D+ + L Sbjct: 61 GIVIDNKAQIILVDTPGIFMPKRRLDRAMVNTAWSGAHDADLVCVLLDARAGIDEEADAL 120 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L+++AK IL++NK+D V E+LL+ A+ AN + ++TFMVSA G G D+ + L Sbjct: 121 LEKVAKVGHPKILVINKVDIVSKEKLLKLAQDANARLTFDETFMVSALSGDGVADLRHAL 180 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI 242 + +P P+ Y DQ+SD PM H AEITREK+F LH+E+PY S V T+ W+++KDGS+ Sbjct: 181 AARVPPGPYHYPEDQMSDAPMRHLAAEITREKIFRQLHQELPYQSTVETDSWQDRKDGSV 240 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I Q I+VER SQ+KI+LGK G IK I +++KEIA ILEQPVHL LFVKV+++WG DP Sbjct: 241 RIEQTIFVERESQRKIVLGKGGATIKAIGADSRKEIAAILEQPVHLFLFVKVRENWGDDP 300 >gi|304392069|ref|ZP_07374011.1| GTP-binding protein Era [Ahrensia sp. R2A130] gi|303296298|gb|EFL90656.1| GTP-binding protein Era [Ahrensia sp. R2A130] Length = 314 Score = 301 bits (771), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 141/284 (49%), Positives = 202/284 (71%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR+G VAL+GA NAGKSTL+NR VG KVSIV+HKVQTTR++VRGI + SQI+F DTPG Sbjct: 20 SRAGFVALIGAPNAGKSTLINRLVGTKVSIVSHKVQTTRTVVRGIANRDNSQIIFADTPG 79 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W K AD++CL++DS R ++ + +L ++ +L++NK Sbjct: 80 IFQPRRRLDRAMVDAAWGGAKDADMICLLIDSERGIRGDAERILDKLKNVHLPKVLLMNK 139 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V+ ++LL + ANK V ++TF++SA G GC+D ++YL LP P +Y DQIS Sbjct: 140 IDRVQRDKLLALVDQANKAVNFDRTFLISAMNGDGCEDYMDYLKDELPEGPHLYPEDQIS 199 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLP+ AEITREK+FL LH+E+PYS+ V E WEE+KDGS+ I QVIY++R + KK++ Sbjct: 200 DLPVKMLAAEITREKIFLRLHQELPYSAHVEVEGWEERKDGSVKIDQVIYIQRTAHKKMV 259 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G G+ IK IS A+ E+ ++L++ VHL LFVKV+++W DP+ Sbjct: 260 IGAKGEVIKAISTAARTELEQLLDRKVHLFLFVKVRENWIDDPE 303 >gi|27380171|ref|NP_771700.1| GTP-binding protein Era [Bradyrhizobium japonicum USDA 110] gi|30178619|sp|O69162|ERA_BRAJA RecName: Full=GTPase Era gi|27353325|dbj|BAC50325.1| GTP-binding protein Era [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 142/283 (50%), Positives = 199/283 (70%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VAL+GA N GKSTLVN VGAKV+IV+ KVQTTR+++RGIV E +QI+ +DTPG Sbjct: 13 TRCGFVALIGAPNVGKSTLVNALVGAKVTIVSRKVQTTRALIRGIVIENNAQIILVDTPG 72 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF+ K + M+ +WS AD+VC+++D+ + +L + A + IL++NK Sbjct: 73 IFSPKRRLDRAMVSTAWSGAHDADLVCVLLDAKTGIDEEAEAILAKAASVNHDKILVINK 132 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V+ E+LL A+ AN+ + KTFM++A G G DD+ + L +P P++Y DQ+S Sbjct: 133 VDLVQREKLLALAQAANERMPFAKTFMIAAISGDGVDDLRSTLAEMVPPGPFLYPEDQMS 192 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D PM H AEITREK++ LH+E+PY S V T+KWEE+KD S+ I Q I+VER SQ+KI+ Sbjct: 193 DAPMRHLAAEITREKIYRKLHQELPYQSTVETDKWEERKDKSVRIEQTIFVERESQRKIV 252 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 LGK G IK+I +++KEI+EIL PVHL LFVKV+++WG DP Sbjct: 253 LGKGGATIKSIGADSRKEISEILGVPVHLFLFVKVRENWGDDP 295 >gi|319408284|emb|CBI81937.1| GTP-binding protein Era [Bartonella schoenbuchensis R1] Length = 303 Score = 298 bits (763), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 149/285 (52%), Positives = 192/285 (67%), Gaps = 2/285 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VAL+G NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGIV + +QIV +DTPG Sbjct: 9 TRCGFVALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYENTQIVLIDTPG 68 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +F M+ +W + ADI+ +++D L + +L + IL+LNK Sbjct: 69 VFRPHKRLEHAMVSAAWGGARGADILLILIDVQNGLSDEVDAMLNVLENIKQDKILVLNK 128 Query: 140 IDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V LL A+I ++ F++ TFM+SA G GC D+L+YL + + PW YS DQ+ Sbjct: 129 IDTVARTSLLALTAKINERMKFLQ-TFMISALNGSGCKDLLHYLSTMMQEGPWYYSEDQV 187 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD+PM AEITREKLFL LH+EIPYSS V TE WEE+ DGS+ I QVIYVER SQKKI Sbjct: 188 SDMPMRQLAAEITREKLFLRLHEEIPYSSTVETENWEERPDGSVKINQVIYVERDSQKKI 247 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +LG G IK I A+KE+ EI+EQ VHL LFVKV+ +W +P+ Sbjct: 248 VLGAGGDTIKAIGQAARKELMEIMEQKVHLFLFVKVRDNWSTNPE 292 >gi|90424140|ref|YP_532510.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB18] gi|90106154|gb|ABD88191.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB18] Length = 320 Score = 298 bits (763), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 146/302 (48%), Positives = 206/302 (68%), Gaps = 8/302 (2%) Query: 9 FNEHKDFVQD--------NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 N+H + QD +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR++ Sbjct: 6 LNDHVESEQDAESAAGPVETRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRAL 65 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 +RGIV E +QI+ +DTPGIF K + M++ +WS AD+VC+++D+ + Sbjct: 66 IRGIVIEDHAQIILVDTPGIFLPKRRLDRAMVKTAWSGAHDADLVCVLLDAREGIDEEAD 125 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +L ++++ + IL++NK+D V E+LL+ A+ AN+ + ++TFMVSA G G +D+ Sbjct: 126 AILTKLSQVNHPKILVINKVDIVSKEKLLKLAQSANERLKFDETFMVSALSGDGVEDLRK 185 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 L S +P P+ Y DQ+SD PM H AEITREK+F LH+E+PY S V T+ W E+KD Sbjct: 186 SLASKVPPGPYHYPEDQMSDAPMRHLAAEITREKIFRQLHQELPYQSTVETDTWTERKDK 245 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 S+ I Q I+VER SQ+KI+LGK G IK+I +++KEIAEIL QPVHL LFVKV+++WG Sbjct: 246 SVRIEQTIFVERESQRKIVLGKGGATIKSIGADSRKEIAEILGQPVHLFLFVKVRENWGD 305 Query: 301 DP 302 DP Sbjct: 306 DP 307 >gi|146341376|ref|YP_001206424.1| GTP-binding protein Era [Bradyrhizobium sp. ORS278] gi|189037292|sp|A4YWC7|ERA_BRASO RecName: Full=GTPase Era gi|146194182|emb|CAL78203.1| GTP-binding protein (era) [Bradyrhizobium sp. ORS278] Length = 307 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 142/286 (49%), Positives = 195/286 (68%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E +SQI+ +D Sbjct: 9 QGATRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGQSQIILVD 68 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGIF+ K + M+ +WS AD+VC+++D+ + L ++ + A + IL+ Sbjct: 69 TPGIFSPKRRLDRAMVTTAWSGAHDADLVCVLLDAKKGLDDEAQAIIDKAASVAHEKILV 128 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NK+D V E+LL AN+ + +TFM+SA G G DD+ L +P P+ Y D Sbjct: 129 VNKVDLVPREKLLALVAAANEKLAFARTFMISALSGDGVDDLRRALAEMVPPGPFHYPED 188 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q+SD PM H AEITREK++ HLH+E+PY S V T+ W E+ DGSI I Q I+VER SQ+ Sbjct: 189 QMSDAPMRHLAAEITREKIYSHLHQELPYQSTVETDSWTERNDGSIRIEQTIFVERDSQR 248 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 KI+LGK G IK+I +++KEIAEI PVHL LFVKV+++WG DP Sbjct: 249 KIVLGKGGATIKSIGAQSRKEIAEITGVPVHLFLFVKVRENWGDDP 294 >gi|148256031|ref|YP_001240616.1| GTP-binding protein Era [Bradyrhizobium sp. BTAi1] gi|189037293|sp|A5EKL6|ERA_BRASB RecName: Full=GTPase Era gi|146408204|gb|ABQ36710.1| GTP-binding protein (era) [Bradyrhizobium sp. BTAi1] Length = 308 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 142/283 (50%), Positives = 196/283 (69%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E SQI+ +DTPG Sbjct: 13 TRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGTSQIILVDTPG 72 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF+ K + M+ +WS AD+VC+++D+ + L ++ + A + + IL++NK Sbjct: 73 IFSPKRRLDRAMVTTAWSGAHDADLVCVLLDAKKGLDDEAQAIIDKAAAVAHQKILVVNK 132 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V E+LL AN+ + +TFM+SA G G DD+ L + +P P+ Y DQ+S Sbjct: 133 VDLVPREKLLALVAAANEKLPFARTFMISALSGDGVDDLKQALAAMVPPGPFHYPEDQMS 192 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D PM H AEITREK++ HLH+E+PY S V T+ W E+KDGSI I Q I+VER SQ+KI+ Sbjct: 193 DAPMRHLAAEITREKIYSHLHQELPYQSTVETDSWTERKDGSIRIEQTIFVERDSQRKIV 252 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 LGK G IK+I +++KEIAEI PVHL LFVKV+++WG DP Sbjct: 253 LGKGGATIKSIGAQSRKEIAEITGVPVHLFLFVKVRENWGDDP 295 >gi|86749731|ref|YP_486227.1| GTP-binding protein Era [Rhodopseudomonas palustris HaA2] gi|86572759|gb|ABD07316.1| GTP-binding protein [Rhodopseudomonas palustris HaA2] Length = 307 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 149/300 (49%), Positives = 198/300 (66%), Gaps = 6/300 (2%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 M EIT D +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++R Sbjct: 1 MPEIT------DAAPAATRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIR 54 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 GIV E SQIV +DTPGIF K + M+R +W+ AD VC+++D+ + + Sbjct: 55 GIVIESGSQIVLVDTPGIFAPKRRLDRAMVRTAWTGAHDADAVCVLLDARAGIDEQAETI 114 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + +L+LNKID V E+LL + AN+ + ++TFMVSA G G DD+ L Sbjct: 115 FGNLENVGHPKVLVLNKIDLVPREKLLALTQAANERLRFDETFMVSALSGDGVDDLRRGL 174 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI 242 + +P+ P+ Y DQ+SD P+ H AEITREK+F LH+E+PY S V T+ W E+KDGS+ Sbjct: 175 AARVPVGPFHYPEDQMSDAPLRHLAAEITREKIFRKLHQELPYQSTVETDVWTERKDGSV 234 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I Q I+VER SQ+KI+LGK G IK+I EA+KEI EILEQ VHL LFVKV++DW +DP Sbjct: 235 RIEQTIFVERESQRKIVLGKGGATIKSIGAEARKEIGEILEQKVHLFLFVKVREDWENDP 294 >gi|312115947|ref|YP_004013543.1| GTP-binding protein Era [Rhodomicrobium vannielii ATCC 17100] gi|311221076|gb|ADP72444.1| GTP-binding protein Era [Rhodomicrobium vannielii ATCC 17100] Length = 364 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 142/285 (49%), Positives = 193/285 (67%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 SR G A++GA NAGKSTLVN VGAKVSIVTHK QTTR+ VRGI + E+QIV +DTP Sbjct: 68 GSRCGFAAVIGAPNAGKSTLVNALVGAKVSIVTHKAQTTRTRVRGIALDGEAQIVLVDTP 127 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + M+ +W+ + AD+ LVVD+ R + ++ E A LIL LN Sbjct: 128 GIFAPKRRLDRAMVETAWTEAREADVAVLVVDAARGFDDTVDPIVNEAANLKIPLILALN 187 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D + E+LL A A++ + +E FM+SA G G +D+ +L + +P PW++ DQI Sbjct: 188 KVDKIHKEKLLALAGEASERLKLESLFMISALSGDGVEDLRGFLATRMPYGPWLFPEDQI 247 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P+ + AEITREK+F+ LH+EIPYSS V T W+ + G++ I Q I+VER SQ+KI Sbjct: 248 ADAPLRQWAAEITREKMFIRLHEEIPYSSTVETTSWKSVRKGAVRIEQTIFVERESQRKI 307 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +LG GQ IK IS+EA+KEI E +E PVHL LFVKV+++W DP+ Sbjct: 308 VLGAKGQAIKHISMEARKEIEEAIETPVHLFLFVKVRENWADDPE 352 >gi|49474067|ref|YP_032109.1| GTP-binding protein Era [Bartonella quintana str. Toulouse] gi|49239571|emb|CAF25928.1| GTP-binding protein era homolog [Bartonella quintana str. Toulouse] Length = 301 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 145/284 (51%), Positives = 189/284 (66%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG V L+G NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGIV +QIV +DTPG Sbjct: 7 TRSGFVVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIHDNTQIVLIDTPG 66 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +F + M+ +W K AD++ +++D+H L + +L + IL+LNK Sbjct: 67 VFRPHKRLERAMVSAAWGGAKSADVLLVLIDAHSGLSDEVCTMLDIVENIKQDKILVLNK 126 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V LL N+ V +TFM+SA G GC D+L+ L + + PW Y DQ+S Sbjct: 127 IDTVAKLSLLALTAQINERVKFLQTFMISALSGSGCKDLLHALSTMMQRGPWYYPEDQVS 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKLFL LH E+PYSS V TE WEE+ DGS+ I QVIYVER SQKKI+ Sbjct: 187 DMPMRQLAAEITREKLFLRLHDELPYSSTVETESWEERSDGSVRINQVIYVERESQKKIV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G+ IK I A+KE+ EI++Q VHL LFVK++ +W +DP+ Sbjct: 247 LGAKGETIKAIGQAARKELMEIMDQKVHLFLFVKIRDNWDNDPE 290 >gi|49475305|ref|YP_033346.1| GTP-binding protein Era [Bartonella henselae str. Houston-1] gi|49238111|emb|CAF27318.1| GTP-binding protein era homolog [Bartonella henselae str. Houston-1] Length = 300 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 146/284 (51%), Positives = 190/284 (66%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG V L+G NAGKSTLVN+ VG KVSIVTHKVQTTR+++RGIV +QIV +DTPG Sbjct: 7 TRSGFVVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDNAQIVLIDTPG 66 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +F+ + M+ +W K+AD++ +++D+ L + +L +A IL+LNK Sbjct: 67 VFSPHKRLERAMVSAAWGGAKNADVLLVLIDAQNGLSDEVCKMLDIVANIKQDKILVLNK 126 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V LL N+ V +TFM+SA KG GC D+L+ L + + PW Y DQIS Sbjct: 127 IDTVAKSSLLALTAGINEHVKFLQTFMISALKGSGCKDLLHALSTMMQEGPWYYPEDQIS 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKLFL LH E+PYSS V TE WEE++DGS+ I QVIYVER SQKKI+ Sbjct: 187 DMPMRQLAAEITREKLFLRLHDELPYSSTVETENWEERRDGSVRINQVIYVERDSQKKIV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G IK I A+KE+ +I+ Q VHL LFVKV+ +W DP+ Sbjct: 247 LGAKGDTIKAIGQAARKELMDIMGQKVHLFLFVKVRDNWDTDPE 290 >gi|92117773|ref|YP_577502.1| GTP-binding protein Era [Nitrobacter hamburgensis X14] gi|91800667|gb|ABE63042.1| GTP-binding protein Era [Nitrobacter hamburgensis X14] Length = 305 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/283 (50%), Positives = 191/283 (67%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E +QI+ +DTPG Sbjct: 10 TRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVVENNAQIILVDTPG 69 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +WS AD+VC ++D+ + +L ++A + IL+LNK Sbjct: 70 IFAPKRRLDRAMVSTAWSGAHDADLVCALLDARAGVDDEADVILTKLAGVAHPKILVLNK 129 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V E+LL A AN + E TFMVSA G G DD+ L +P P+ Y DQ+S Sbjct: 130 IDLVPREKLLALASAANGRMAFEDTFMVSALSGDGVDDLRRALAERVPEGPFHYPEDQMS 189 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ H AEITREK++ HLH+E+PY S V T+ W E+ D S+ I Q I+VER SQ+KI+ Sbjct: 190 DAPLRHLAAEITREKIYRHLHQELPYQSTVETDTWTERNDKSVRIEQTIFVERDSQRKIV 249 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 LGKNG IK I +++KEI EIL QPVHL LFVKV+++WG DP Sbjct: 250 LGKNGATIKAIGADSRKEIGEILGQPVHLFLFVKVRENWGDDP 292 >gi|91977123|ref|YP_569782.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB5] gi|91683579|gb|ABE39881.1| GTP-binding protein Era [Rhodopseudomonas palustris BisB5] Length = 307 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 143/292 (48%), Positives = 196/292 (67%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E D +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E S Sbjct: 3 ETTDAAPAATRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGGS 62 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 QIV +DTPGIF K + M++ +W+ AD+VC+++D+ L + +A Sbjct: 63 QIVLVDTPGIFAPKRRLDRAMVKTAWTGAHDADLVCVLLDARSGLDEEAETIFGNLANVG 122 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +L++NKID V E+LL + AN+ + ++TFMVSA G G DD+ L + +P P Sbjct: 123 HPKVLVINKIDLVPREKLLALTQTANQRLHFDETFMVSALSGDGVDDLRRGLAARVPAGP 182 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + Y DQ+SD P+ H AEITREK+F LH+E+PY S V T+ W ++KDGS+ I Q ++V Sbjct: 183 FHYPEDQMSDAPLRHLAAEITREKIFRKLHQELPYQSTVETDSWTDRKDGSVRIEQTVFV 242 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 ER SQ+KI+LGK G IK+I EA+KEI EILEQ VHL LFVKV+++W +DP Sbjct: 243 ERESQRKIVLGKGGATIKSIGAEARKEIGEILEQTVHLFLFVKVRENWENDP 294 >gi|220927100|ref|YP_002502402.1| GTP-binding protein Era [Methylobacterium nodulans ORS 2060] gi|219951707|gb|ACL62099.1| GTP-binding protein Era [Methylobacterium nodulans ORS 2060] Length = 320 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 142/284 (50%), Positives = 190/284 (66%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G VAL+G NAGKSTL+N VG+KVSIV+ KVQTTR++VRGI E +QIVF+DTPG Sbjct: 25 TRAGFVALIGVPNAGKSTLLNSLVGSKVSIVSRKVQTTRALVRGIAMEGSAQIVFVDTPG 84 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +WS AD VCL++D+ + + + LL + + IL+LNK Sbjct: 85 IFAPKRRLDRAMVTSAWSGAADADAVCLLIDARKGVDAEVDALLDRLPELRRPKILVLNK 144 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + ERLLE A N + + TFMVSA G G D+ L +P PW+Y DQ+S Sbjct: 145 IDVIARERLLELAASLNARLPFDHTFMVSALTGDGVADLRRVLAGLMPPGPWLYPEDQVS 204 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ AEITREK++ LH+E+PYSS V T++W+ + DGS+ I Q I+VER SQ+KI+ Sbjct: 205 DAPLRMLAAEITREKIYDRLHEELPYSSTVETDQWQVRPDGSVRIEQTIFVERESQRKIV 264 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK GQ IK I A+ EIAE E PVHL L+VKV+++W DP+ Sbjct: 265 LGKGGQTIKAIGQAARVEIAEAAEAPVHLFLYVKVRENWADDPE 308 >gi|240850198|ref|YP_002971591.1| GTP-binding protein Era [Bartonella grahamii as4aup] gi|240267321|gb|ACS50909.1| GTP-binding protein Era [Bartonella grahamii as4aup] Length = 301 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/284 (50%), Positives = 187/284 (65%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG V L+G NAGKSTLVN+ VG KVSIVTHKVQTTR+++RGIV + QIV +DTPG Sbjct: 7 TRSGFVVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDDVQIVLVDTPG 66 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +F + M+ +W K AD++ +++D+ L + +L + +L+LNK Sbjct: 67 VFRPHKRLERAMVSAAWGGAKSADVLLVLIDAQSGLSDEVDMMLDIVNNMKQEKVLVLNK 126 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V LL N+ V +TFM+SA G GC D+L+ L + + PW Y DQIS Sbjct: 127 VDTVVKSSLLALTTKINERVKFAQTFMISALNGSGCKDLLHALSNMMQEGPWYYPEDQIS 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM H AEITREKLFL LH E+PYSS V TE WEE+ DGS+ I QVIYVER SQKKI+ Sbjct: 187 DMPMRHLAAEITREKLFLRLHDELPYSSTVETENWEERSDGSVKINQVIYVERESQKKIV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G IK I A+KE+ EI++Q VHL LFVKV+ +W DP+ Sbjct: 247 LGAKGDTIKAIGQAARKELMEIMDQKVHLFLFVKVRDNWDTDPE 290 >gi|209884976|ref|YP_002288833.1| GTP-binding protein Era [Oligotropha carboxidovorans OM5] gi|226741225|sp|B6JGG2|ERA_OLICO RecName: Full=GTPase Era gi|209873172|gb|ACI92968.1| GTP-binding protein Era [Oligotropha carboxidovorans OM5] Length = 308 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 140/284 (49%), Positives = 194/284 (68%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E +QIV +DTPG Sbjct: 13 TRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVVEGNAQIVLVDTPG 72 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +WS AD+VC+++D+ L + ++ L++NK Sbjct: 73 IFTPKRRLDRAMVSTAWSGAHDADMVCVLLDARAGLDEEAEAIFTKLEAVKHPKFLVINK 132 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V E+LL A+ AN+ + +TFMV+A G G DD+ L + +P P++Y DQ+S Sbjct: 133 IDLVAREKLLALAQRANERIAFRETFMVAALSGDGVDDLRRALAAAMPEGPYLYPEDQMS 192 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ H AEITREK++ +LH+E+PY S V TE W+E ++GS+ I Q I+VER SQ+KI+ Sbjct: 193 DAPLRHLAAEITREKIYRNLHQELPYQSTVETESWKEMRNGSVRIEQTIFVERDSQRKIV 252 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK G IK I +A+KEIAEI+ QPVHL LFVKV+ +WG DP+ Sbjct: 253 LGKGGATIKAIGADARKEIAEIVGQPVHLFLFVKVRDNWGDDPE 296 >gi|75676108|ref|YP_318529.1| GTP-binding protein Era [Nitrobacter winogradskyi Nb-255] gi|74420978|gb|ABA05177.1| GTP-binding protein Era [Nitrobacter winogradskyi Nb-255] Length = 303 Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 144/284 (50%), Positives = 194/284 (68%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 SR G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E +QI+ +DTP Sbjct: 7 TSRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIENNAQIILVDTP 66 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + M+ +WS AD+VC+++D+ + +L ++A + IL+LN Sbjct: 67 GIFVPKRRLDRAMVSTAWSGAHDADLVCVLLDARAGIDEEADAILTKLAGVAHPKILVLN 126 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V+ E+LL A AN+ + E+TFMVSA G G DD+ L +P P+ Y DQ+ Sbjct: 127 KIDLVRREKLLALAGSANERLGFEETFMVSALSGDGVDDLRLALAGRVPEGPFHYPEDQM 186 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD P+ H AEITREK++ HLH+E+PY S V T+ W E+ D S+ I Q I+VER SQ+KI Sbjct: 187 SDAPLRHLAAEITREKIYRHLHQELPYQSTVETDTWTERNDKSVRIEQTIFVERDSQRKI 246 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 +LGKNG IK+I ++KEI EI+ QPVHL LFVKV++ WG DP Sbjct: 247 VLGKNGATIKSIGASSRKEIGEIIGQPVHLFLFVKVREKWGDDP 290 >gi|154253315|ref|YP_001414139.1| GTP-binding protein Era [Parvibaculum lavamentivorans DS-1] gi|154157265|gb|ABS64482.1| GTP-binding protein Era [Parvibaculum lavamentivorans DS-1] Length = 318 Score = 294 bits (753), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 143/292 (48%), Positives = 193/292 (66%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N +D +R G VA++GA NAGKSTL+N+ VG+KV+IVTHKVQTTRS +RGI E Sbjct: 13 NGARDAEAGITRCGFVAIIGAPNAGKSTLLNQLVGSKVAIVTHKVQTTRSRIRGIAMEGN 72 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 +QIVF+DTPGIF K + M+ +W +D++ L+VD ++ +L+ + + Sbjct: 73 TQIVFVDTPGIFKPKRRLDRAMVDAAWGGAGDSDLIVLMVDMESGRDSDVDRILEGLKSQ 132 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + IL+LNK+D E+LL+ A N+ +TFM+SA KG G D+ YL +P Sbjct: 133 GRKAILVLNKVDACPREKLLKTAAALNETGIFTETFMISALKGDGVADLKKYLAGLMPPG 192 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 PW Y DQ +D+P+ +E+TREKLFL LH E+PYS V TE WE+KKDGSI I QVI+ Sbjct: 193 PWHYPEDQAADVPLRSLASEVTREKLFLRLHDELPYSLTVETESWEQKKDGSIRIAQVIF 252 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER SQKKI LGK GQ IKT+ A++E+ E+LE VHL LFVKV+++W D Sbjct: 253 VERDSQKKIALGKGGQTIKTVGQLAREELQEMLETKVHLFLFVKVRENWSDD 304 >gi|170744646|ref|YP_001773301.1| GTP-binding protein Era [Methylobacterium sp. 4-46] gi|168198920|gb|ACA20867.1| GTP-binding protein Era [Methylobacterium sp. 4-46] Length = 315 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 141/284 (49%), Positives = 190/284 (66%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G VAL+G NAGKSTL+N VG+KVSIV+ KVQTTR++VRGI E +QIVF+DTPG Sbjct: 20 TRAGFVALIGVPNAGKSTLLNSLVGSKVSIVSRKVQTTRALVRGIAIEGAAQIVFVDTPG 79 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +WS AD VCL+VD+ + + + +L + + IL+LNK Sbjct: 80 IFAPKRRLDRAMVTSAWSGAADADAVCLLVDARKGVDPEVEAVLGRLPELRRPKILVLNK 139 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + ERLL+ A N + + TFMVSA G G D+ L +P PW+Y DQ+S Sbjct: 140 IDVIARERLLDLAAALNGRLPFDHTFMVSALTGDGVADLRRVLAGLMPPGPWLYPEDQVS 199 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ AEITREK++ LH+E+PYSS V T++W+ + DGS+ I Q I+VER SQ+KI+ Sbjct: 200 DAPLRMLAAEITREKIYDRLHEELPYSSTVETDQWQVRPDGSVRIEQTIFVERESQRKIV 259 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK GQ IK I A+ EIAE E PVHL L+VKV+++W DP+ Sbjct: 260 LGKGGQTIKAIGQAARVEIAEAAEAPVHLFLYVKVRENWADDPE 303 >gi|163867993|ref|YP_001609197.1| GTP-binding protein Era [Bartonella tribocorum CIP 105476] gi|161017644|emb|CAK01202.1| GTP-binding protein Era [Bartonella tribocorum CIP 105476] Length = 303 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 143/283 (50%), Positives = 187/283 (66%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V L+G NAGKSTLVN+ VG KVSIVTHKVQTTR+++RGIV + QIV +DTPG+ Sbjct: 10 RSGFVVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDDVQIVLVDTPGV 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F + M+ +W K AD++ +++D+ L + +L + +L+LNK+ Sbjct: 70 FRPHKRLERAMVSAAWGGAKSADVLLVLIDAQSGLSDEVDRMLDIVNTMKQEKVLVLNKV 129 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V LL N+ V +TFM+SA G GC D+L+ L + + PW Y DQISD Sbjct: 130 DTVVKSSLLALTTKINERVKFAQTFMISALNGSGCKDLLHALSNMMQEGPWYYPEDQISD 189 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +PM H AEITREKLFL LH E+PYSS V TE +EE+ DGS+ I QVIYVER SQKKI+L Sbjct: 190 MPMRHLAAEITREKLFLRLHDELPYSSTVETESFEERSDGSVKINQVIYVERESQKKIVL 249 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G IKTI A+KE+ EI+++ VHL LFVKV+ +W DP+ Sbjct: 250 GAKGDTIKTIGQAARKELMEIMDKKVHLFLFVKVRNNWDTDPE 292 >gi|83593186|ref|YP_426938.1| GTP-binding protein Era [Rhodospirillum rubrum ATCC 11170] gi|83576100|gb|ABC22651.1| GTP-binding protein Era [Rhodospirillum rubrum ATCC 11170] Length = 309 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 139/291 (47%), Positives = 191/291 (65%), Gaps = 10/291 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA++GA NAGKSTLVNR VG+KV+IV+ KVQTTRS VRGI E+Q+VF+DTPGI Sbjct: 16 RCGFVAVIGAPNAGKSTLVNRLVGSKVTIVSPKVQTTRSRVRGIAMVGEAQVVFVDTPGI 75 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F + + + M+ +W AD+V LV+D+H+ + + ++L ++ R +L LNK+ Sbjct: 76 FQPRKRFDRAMVAAAWEGALEADLVLLVIDAHKGITAEVEEILTKLKATGRRALLALNKV 135 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++ RLLE A + + EK FM+SA G GCDDVL +L +P PW++ D++SD Sbjct: 136 DALERSRLLEMASRLDAALPFEKVFMISALTGSGCDDVLAWLAERVPAGPWMFPEDEVSD 195 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 LP AEITREK+FL LH+E+PY++ VVTE W E+ DGS+ I Q + V+R SQ+ I L Sbjct: 196 LPQRLLAAEITREKVFLQLHEELPYAAAVVTESWRERADGSVRIDQTVLVQRESQRAIFL 255 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ----------KDWGHD 301 GK G IK + A+ E++EILE+PVHL L VKV +WG D Sbjct: 256 GKGGARIKALGRAARVELSEILERPVHLFLHVKVNDRLWDDRDQYSEWGLD 306 >gi|85716283|ref|ZP_01047257.1| GTP-binding protein Era [Nitrobacter sp. Nb-311A] gi|85696955|gb|EAQ34839.1| GTP-binding protein Era [Nitrobacter sp. Nb-311A] Length = 303 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 141/284 (49%), Positives = 192/284 (67%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E +QI+ +DTP Sbjct: 7 TARCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVVENNAQIILVDTP 66 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + M+ +WS AD+VC+++D+ + +L ++A + IL+LN Sbjct: 67 GIFVPKRRLDRAMVSTAWSGAHDADLVCVLLDARAGIDDEADAILTKLAAVAHPKILVLN 126 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V E+LL A AN+ + E TFMVSA G G DD+ L +P P+ Y DQ+ Sbjct: 127 KIDLVPREKLLALAGAANERLSFEDTFMVSALSGDGVDDLRRSLAGRVPEGPFHYPEDQM 186 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD P+ H AEITREK++ HLH+E+PY S V T+ W E+ D S+ I Q I+VER SQ+KI Sbjct: 187 SDAPLRHLAAEITREKIYRHLHQELPYQSTVETDTWTERNDKSVRIEQTIFVERDSQRKI 246 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 +LGK+G IK I ++++EI EI+ QPVHL LFVKV++ WG DP Sbjct: 247 VLGKSGATIKAIGADSRREIGEIIGQPVHLFLFVKVREKWGDDP 290 >gi|319407032|emb|CBI80669.1| GTP-binding protein Era [Bartonella sp. 1-1C] Length = 300 Score = 291 bits (746), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 144/284 (50%), Positives = 189/284 (66%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+G NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGIV ++QI+ +DTPG Sbjct: 7 TRSGFVALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +F + M+ +W K+ADI+ +++D+ L + +L + IL+LNK Sbjct: 67 VFRPHKRLERAMVSAAWGGAKNADILLVLIDAQSGLSDEVDAMLDILKSIEQDKILVLNK 126 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V LL N+ V +TFM+SA G GC D+L+YL + + PW Y DQIS Sbjct: 127 IDTVVKSSLLALTAKVNERVNFLQTFMISALNGSGCKDLLHYLSTIMQEGPWYYPEDQIS 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKLFL LH+E+PYSS V TE WEE +G++ I QVIYVER +QKKI+ Sbjct: 187 DMPMRQLAAEITREKLFLRLHQELPYSSTVETENWEECANGAVKINQVIYVERDNQKKIV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G IK I A+KE+ +IL Q VHL +FVKV+ DW +P+ Sbjct: 247 LGAKGSTIKAIGQAARKELMDILGQKVHLFIFVKVRDDWDANPE 290 >gi|218530504|ref|YP_002421320.1| GTP-binding protein Era [Methylobacterium chloromethanicum CM4] gi|240138863|ref|YP_002963338.1| GTP-binding protein [Methylobacterium extorquens AM1] gi|218522807|gb|ACK83392.1| GTP-binding protein Era [Methylobacterium chloromethanicum CM4] gi|240008835|gb|ACS40061.1| GTP-binding protein [Methylobacterium extorquens AM1] Length = 326 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/286 (48%), Positives = 191/286 (66%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ +R+G VAL+G NAGKSTL+N VGAKVSIV+ KVQTTR++VRGIV E +QIV +D Sbjct: 28 REETRAGFVALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTRALVRGIVMEGNAQIVLVD 87 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGIF K + M+ +WS AD +CL++D+ + + + +L+ + + ILI Sbjct: 88 TPGIFAPKRRLDRAMVHSAWSGAADADAICLLIDARKGVDEEVETILRRLPEVKRPKILI 147 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNKID + ERLLE N +V E TF++SA KG G D+ L + +P +PW+Y D Sbjct: 148 LNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADLRKALAARMPPSPWLYPED 207 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QISD P+ AEITREK++ LH+E+PY S V T++W+ + DGS+ I Q I+VER SQ+ Sbjct: 208 QISDAPLRMLAAEITREKIYDRLHEELPYRSTVETDQWQVRPDGSVRIEQTIFVERESQR 267 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I+LGKNGQ IK I A+ EI E E VHL L VKV+++W DP Sbjct: 268 SIVLGKNGQTIKAIGQAARIEITEAAEAKVHLFLHVKVRENWADDP 313 >gi|163851698|ref|YP_001639741.1| GTP-binding protein Era [Methylobacterium extorquens PA1] gi|163663303|gb|ABY30670.1| GTP-binding protein Era [Methylobacterium extorquens PA1] Length = 326 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 141/286 (49%), Positives = 190/286 (66%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ +R+G VAL+G NAGKSTL+N VGAKVSIV+ KVQTTR++VRGIV E +QIV +D Sbjct: 28 REETRAGFVALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTRALVRGIVMEGNAQIVLVD 87 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGIF K + M+ +WS AD VCL++D+ + + +L+ + + ILI Sbjct: 88 TPGIFAPKRRLDRAMVHSAWSGAADADAVCLLIDARKGADEEVETILRRLPEVKRPKILI 147 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNKID + ERLLE N +V E TF++SA KG G D+ L + +P +PW+Y D Sbjct: 148 LNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADLRKALAARMPPSPWLYPED 207 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QISD P+ AEITREK++ LH+E+PY S V T++W+ + DGS+ I Q I+VER SQ+ Sbjct: 208 QISDAPLRMLAAEITREKIYDRLHEELPYRSTVETDQWQVRPDGSVRIEQTIFVERESQR 267 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I+LGKNGQ IK I A+ EI E E VHL L VKV+++W DP Sbjct: 268 SIVLGKNGQTIKAIGQAARIEITEAAEAKVHLFLHVKVRENWADDP 313 >gi|319405459|emb|CBI79078.1| GTP-binding protein Era [Bartonella sp. AR 15-3] Length = 300 Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 143/284 (50%), Positives = 188/284 (66%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+G NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGIV ++QI+ +DTPG Sbjct: 7 TRSGFVALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +F + M+ +W K+ADI+ +++D L + +L + IL+LNK Sbjct: 67 VFRPHKRLERAMVSAAWGGAKNADILLVLIDVQSGLSDEVSAMLDILKSVEQDKILVLNK 126 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V LL N+ V +TFM+SA G GC D+L+YL + + PW Y DQIS Sbjct: 127 IDTVVKSSLLALTAQVNEQVNFLQTFMISALNGSGCKDLLHYLSTIMQEGPWYYPEDQIS 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKLFL LH+E+PYSS V TE WEE +GS+ I QVIYVER +QKKI+ Sbjct: 187 DMPMRQLAAEITREKLFLRLHQELPYSSTVETENWEECTNGSVKINQVIYVERDNQKKIV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G IK I A+KE+ +I+ Q VHL +FVKV+ +W +P+ Sbjct: 247 LGTKGSTIKAIGQAARKELMDIMGQKVHLFIFVKVRDNWDANPE 290 >gi|254561470|ref|YP_003068565.1| GTP-binding protein [Methylobacterium extorquens DM4] gi|254268748|emb|CAX24709.1| GTP-binding protein [Methylobacterium extorquens DM4] Length = 326 Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 140/286 (48%), Positives = 191/286 (66%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ +R+G VAL+G NAGKSTL+N VGAKVSIV+ KVQTTR++VRGIV E +QIV +D Sbjct: 28 REETRAGFVALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTRALVRGIVMEGHAQIVLVD 87 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGIF K + M+ +WS AD +CL++D+ + + + +L+ + + ILI Sbjct: 88 TPGIFAPKRRLDRAMVHSAWSGAADADAICLLIDARKGVDEEVETILRRLPEVKRPKILI 147 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNKID + ERLLE N +V E TF++SA KG G D+ L + +P +PW+Y D Sbjct: 148 LNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADLRKALAARMPPSPWLYPED 207 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QISD P+ AEITREK++ LH+E+PY S V T++W+ + DGS+ I Q I+VER SQ+ Sbjct: 208 QISDAPLRMLAAEITREKIYDRLHEELPYRSTVETDQWQVRPDGSVRIEQTIFVERESQR 267 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I+LGKNGQ IK I A+ EI E E VHL L VKV+++W DP Sbjct: 268 SIVLGKNGQTIKAIGQAARIEITEAAEAKVHLFLHVKVRENWADDP 313 >gi|6655023|gb|AAD02940.2| GTP-binding protein Era [Bradyrhizobium japonicum] Length = 309 Score = 289 bits (739), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 140/284 (49%), Positives = 196/284 (69%), Gaps = 1/284 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VAL+GA N GKSTLVN VGAKV+IV+ KVQTTR+++RGIV E +QI+ +DTPG Sbjct: 13 TRCGFVALIGAPNVGKSTLVNALVGAKVTIVSRKVQTTRALIRGIVIENNAQIILVDTPG 72 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF+ K + M+ +WS AD+VC+++D+ + +L + A + IL++NK Sbjct: 73 IFSPKRRLDRAMVSTAWSGAHDADLVCVLLDAKTGIDEEAEAILAKAASVNHDKILVINK 132 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V+ E+LL A+ AN+ + KTFM++A G G DD+ + L +P P++Y DQ+S Sbjct: 133 VDLVQREKLLALAQAANERMPFAKTFMIAAISGDGVDDLRSTLAEMVPPGPFLYPEDQMS 192 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVT-EKWEEKKDGSILIRQVIYVERPSQKKI 258 D PM H AEITREK++ LH+E+PY S V T KWE +K S+ I Q I+VER SQ+KI Sbjct: 193 DAPMRHLAAEITREKIYRKLHQELPYQSTVETARKWEARKAKSVRIEQTIFVERESQRKI 252 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 +LGK G IK+I +++KEI+EIL PVHL LFVKV+++WG DP Sbjct: 253 VLGKGGATIKSIGADSRKEISEILGVPVHLFLFVKVRENWGDDP 296 >gi|319404019|emb|CBI77607.1| GTP-binding protein Era [Bartonella rochalimae ATCC BAA-1498] Length = 300 Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 143/285 (50%), Positives = 193/285 (67%), Gaps = 2/285 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VAL+G NAGKSTLVN+ VG KVSIVTHKVQTTR++VRGIV ++QI+ +DTPG Sbjct: 7 TRSGFVALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +F + M+ +W K+ADI+ +++D+ + +L + IL+LNK Sbjct: 67 VFRPHKRLERAMVSAAWGGAKNADILLVLIDAQSGFSDEVDAMLDILKSIEQDKILVLNK 126 Query: 140 IDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V LL A+++ ++ F++ TFM+SA G GC D+L+YL + + PW Y DQI Sbjct: 127 IDTVVKSSLLALTAKVSERVNFLQ-TFMISALNGSGCKDLLHYLSTIMQEGPWYYPEDQI 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD+PM AEITREKLFL LH+E+PYSS V TE WEE +GS+ I QVIYVER +QKKI Sbjct: 186 SDMPMRQLAAEITREKLFLRLHQELPYSSTVETENWEECANGSVKINQVIYVERDNQKKI 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +LG G IK I A+KE+ +IL Q VHL +FVKV+ +W +P+ Sbjct: 246 VLGAKGSTIKAIGQAARKELMDILGQKVHLFIFVKVRDNWDANPE 290 >gi|119383172|ref|YP_914228.1| GTP-binding protein Era [Paracoccus denitrificans PD1222] gi|119372939|gb|ABL68532.1| GTP-binding protein Era [Paracoccus denitrificans PD1222] Length = 303 Score = 288 bits (737), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 144/283 (50%), Positives = 195/283 (68%), Gaps = 4/283 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RGI SQIVF+DTP Sbjct: 3 QTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGIAMRGASQIVFVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLIL 135 GIF + + M++ +W AD++ L++++HR L I D L++ A ++ ++L Sbjct: 63 GIFRPRRRLDRSMVKAAWGGAADADVILLLIEAHRGLTDGTQAIIDNLRDHAG-TTPVVL 121 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID VK E LL ++ N +TFM+SA KGHGCDD+L +L +P PW+Y Sbjct: 122 VINKIDRVKSETLLALSQQVNAAFDFTRTFMISAEKGHGCDDLLEWLAGQVPEGPWLYPE 181 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ++DLPM AEITREKL L LH+EIPY V TE+WEEKKDGS + Q++YV RP Sbjct: 182 DQVADLPMRMIAAEITREKLTLRLHEEIPYQLTVETERWEEKKDGSARVDQIVYVARPGH 241 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I+LGK G+ IK + A+ E+AE + +PVHL L VKV+++W Sbjct: 242 KGIVLGKGGETIKAVGQAARAELAEFMGRPVHLFLQVKVRENW 284 >gi|188581485|ref|YP_001924930.1| GTP-binding protein Era [Methylobacterium populi BJ001] gi|179344983|gb|ACB80395.1| GTP-binding protein Era [Methylobacterium populi BJ001] Length = 319 Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 139/283 (49%), Positives = 188/283 (66%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G VAL+G NAGKSTL+N VGAKVSIV+ KVQTTR++VRGIV E ++Q+V +DTPG Sbjct: 24 TRAGFVALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTRALVRGIVMEGDAQVVLVDTPG 83 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +WS AD VCL++D+ + + +L+ + + ILILNK Sbjct: 84 IFAPKRRLDRAMVHSAWSGAADADAVCLLIDARKGADDEVETILRRLPEVKRPKILILNK 143 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + ERLLE N +V E TF++SA G G D+ L + +P PW+Y DQIS Sbjct: 144 IDLIARERLLELVAKLNAMVPFEDTFLISALNGDGVADLRKALAARMPPGPWLYPEDQIS 203 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ AEITREK++ LH+E+PY S V T++W+ + DGS+ I Q I+VER SQ+ I+ Sbjct: 204 DAPLRMLAAEITREKIYDRLHEELPYRSTVETDQWQVRPDGSVRIEQTIFVERESQRSIV 263 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 LGK GQ IK I A+ EIAE+ E VHL L VKV+++W DP Sbjct: 264 LGKGGQTIKAIGQAARIEIAEVAEAKVHLFLHVKVRENWADDP 306 >gi|319898693|ref|YP_004158786.1| GTP-binding protein Era [Bartonella clarridgeiae 73] gi|319402657|emb|CBI76203.1| GTP-binding protein Era [Bartonella clarridgeiae 73] Length = 300 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 142/284 (50%), Positives = 186/284 (65%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VA++G NAGKSTLVN+ VG K+SIVTHKVQTTR++VRGIV ++QI+ +DTPG Sbjct: 7 TRSGFVAVIGVPNAGKSTLVNQLVGTKISIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +F + M+ +W K+ADI+ +++D L + +L + IL+LNK Sbjct: 67 VFRPHKRLERAMVSAAWGGAKNADILLVLIDVQSGLSDEVDAMLDILKSVEQDKILVLNK 126 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V LL N+ V +TFM+SA G GC D+L YL + + PW Y DQIS Sbjct: 127 IDTVAKSSLLALTAKVNERVNFLQTFMISALNGSGCKDLLYYLSTIMQEGPWYYPEDQIS 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+PM AEITREKLFL LH+E+PYSS V TE WEE GS+ I QVIYVER +QKKI+ Sbjct: 187 DMPMRQLAAEITREKLFLRLHQELPYSSTVETENWEECASGSVKISQVIYVERDNQKKIV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG G IK I A+KE+ +I+ Q VHL LFVKV+ +W +P+ Sbjct: 247 LGAKGGTIKAIGQAARKELMDIMGQKVHLFLFVKVRDNWDSNPE 290 >gi|299135101|ref|ZP_07028292.1| GTP-binding protein Era [Afipia sp. 1NLS2] gi|298590078|gb|EFI50282.1| GTP-binding protein Era [Afipia sp. 1NLS2] Length = 306 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 138/284 (48%), Positives = 192/284 (67%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VAL+GA N GKSTLVN VG+KV+IV+ KVQTTR+++RGIV E +QIV +DTPG Sbjct: 11 TRCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEDNAQIVLVDTPG 70 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +WS AD+VC+++D+ L + ++ L++NK Sbjct: 71 IFTPKRRLDRAMVSTAWSGAHDADMVCVLLDARAGLDEEADAIFAKLEAVKHPKFLVINK 130 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V E+LL A+ AN+ + ++TFM++A G G DD+ L +P P+ Y DQ+S Sbjct: 131 IDLVAREKLLALAQKANERIAFKQTFMIAAISGDGVDDLRRALAEAMPEGPYHYPEDQMS 190 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ H AEITREK++ +LH+E+PY S V T+ W+E KD S+ I Q I+VER SQ+KI+ Sbjct: 191 DAPLRHLAAEITREKIYRNLHQELPYQSTVETDSWKELKDRSVRIEQTIFVERDSQRKIV 250 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LGK+G IK I +A+KEIA+IL Q VHL LFVKV+ +WG DP+ Sbjct: 251 LGKSGATIKAIGADARKEIADILGQKVHLFLFVKVRDNWGDDPE 294 >gi|84500560|ref|ZP_00998809.1| GTP-binding protein Era [Oceanicola batsensis HTCC2597] gi|84391513|gb|EAQ03845.1| GTP-binding protein Era [Oceanicola batsensis HTCC2597] Length = 301 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 137/282 (48%), Positives = 192/282 (68%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL NR VGAKVSIVTHKVQTTR+ +RG+ E +SQIVF+DTP Sbjct: 2 TTRAGFVALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVAIEGDSQIVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +WS + AD+ L+V++HR + + +L+ + + + R+ L Sbjct: 62 GLFQPRRRLDRAMVAAAWSGVADADLTVLLVEAHRGVTPGVEKILETLQQMAKGRRVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ ++LL+ E N EKTFM+SA KGHG D+ +L + +P +PW+Y D Sbjct: 122 INKIDRVEAKQLLDLTERLNAAYPFEKTFMISAEKGHGVQDLKEWLAAEMPESPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLP+ AE+TREKL L LH+E+PY V TE WEE+KDGS I Q+IYV R K Sbjct: 182 QIADLPLRMIAAEMTREKLTLRLHQELPYQLTVETESWEERKDGSARIDQLIYVARDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK +S A++E+ E L + VHL L VKV+++W Sbjct: 242 GIVLGNKGETIKAVSKAAREELEEFLGRRVHLFLQVKVRQNW 283 >gi|126726094|ref|ZP_01741936.1| GTP-binding protein Era [Rhodobacterales bacterium HTCC2150] gi|126705298|gb|EBA04389.1| GTP-binding protein Era [Rhodobacterales bacterium HTCC2150] Length = 302 Score = 285 bits (728), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 143/285 (50%), Positives = 195/285 (68%), Gaps = 2/285 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RGI E +SQIVF+DTP Sbjct: 3 DTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGISIEGDSQIVFVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILI 136 G+F + + M+ +WS AD+V L+V++HR + + +L + +R+ R+ L Sbjct: 63 GLFRPRRRLDRAMVAAAWSGAADADLVVLLVEAHRGITEGVEAILAGLGERADGRRVALA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ +LL E N+ E+TF++SA +GHG DD+ +L LP PW+Y D Sbjct: 123 INKIDKVQASKLLALTEKLNETFPFEQTFLISAERGHGVDDLRVWLAGELPNGPWLYPED 182 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLP AE+TREKL L LH+E+PY V TE WEEKKDGS+ I Q+IYV R K Sbjct: 183 QIADLPTRMIAAEMTREKLTLRLHQELPYQMTVETESWEEKKDGSVRIEQMIYVVRDGHK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I+LGK G+ IK +S A++EI E L++PVHL L +KV+ +W D Sbjct: 243 GIVLGKGGETIKAVSKAAREEITEFLDRPVHLFLKIKVRPNWLDD 287 >gi|217977174|ref|YP_002361321.1| GTP-binding protein Era [Methylocella silvestris BL2] gi|217502550|gb|ACK49959.1| GTP-binding protein Era [Methylocella silvestris BL2] Length = 310 Score = 283 bits (723), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 136/284 (47%), Positives = 187/284 (65%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VAL+GA NAGKSTL+N+ VGAKVSIV+ K QTTR+ VRGI E ++QI+F+DTPG Sbjct: 16 ARCGFVALIGAPNAGKSTLINQLVGAKVSIVSRKAQTTRAQVRGIAIEGDAQIIFVDTPG 75 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + + M+ +W AD V L+VD+ + L ++ +L +A + IL++NK Sbjct: 76 IFAPRRRLDRAMVTSAWGGAGDADAVALLVDARKGLDEDVEAILARLADVRAAKILVINK 135 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V+P +LL+ A N + + TFM+SA +G+G + + L + +P PW Y DQIS Sbjct: 136 IDTVEPPKLLDIAAQFNDRLAFDHTFMISALRGYGVETMRRQLAALMPPGPWHYPEDQIS 195 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D PM AEITREK+F LH E+PY S V T+ W E DGS+ I Q I+V R KKI+ Sbjct: 196 DAPMRSLAAEITREKIFERLHDELPYQSTVETDIWTEMPDGSVRIEQTIFVMRDGHKKIV 255 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 LG+ G+ IK I A+KEI+E +EQ HL LFVKV+++W DP+ Sbjct: 256 LGEGGRTIKAIGTAARKEISEAIEQKAHLFLFVKVRENWADDPE 299 >gi|89053015|ref|YP_508466.1| GTP-binding protein Era [Jannaschia sp. CCS1] gi|88862564|gb|ABD53441.1| GTP-binding protein Era [Jannaschia sp. CCS1] Length = 312 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 132/282 (46%), Positives = 190/282 (67%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E +SQ+VF+DTP Sbjct: 12 TTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLVFVDTP 71 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILI 136 G+F + + M++ +W+ AD+V L++++HR L + +L + +R+ ++ L Sbjct: 72 GLFRPRRRLDRAMVKAAWTGAADADVVVLLIEAHRGLTDGVQAILDGLKERTGDRKVALA 131 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V LL+ E N ++T+M+SA KGHG ++ +L + +P PW+Y D Sbjct: 132 INKIDRVDAPVLLKLTEDLNAAYPFDETYMISAEKGHGVKELRTWLAAEVPEGPWLYPED 191 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLP+ AE+TREKL L LH+E+PY V TE WE ++DGS I Q+IYV R K Sbjct: 192 QIADLPLRMIAAEMTREKLTLRLHQELPYQLTVETEAWENRRDGSAKIDQIIYVARDGHK 251 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK++S A++EIAE + PVHL L VKV+ W Sbjct: 252 GILLGKGGETIKSVSKAAREEIAEFVGHPVHLFLQVKVRPGW 293 >gi|83951644|ref|ZP_00960376.1| GTP-binding protein Era [Roseovarius nubinhibens ISM] gi|83836650|gb|EAP75947.1| GTP-binding protein Era [Roseovarius nubinhibens ISM] Length = 301 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 137/282 (48%), Positives = 185/282 (65%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E E+Q+VF+DTP Sbjct: 2 STRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVALEGEAQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W AD+V L++++HR L + +L+ + R + L Sbjct: 62 GLFKPRRRLDRAMVAAAWGGASDADVVVLLIEAHRGLTEGVERILEGLGDVTRGRPVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID VK E LL E N +TFM+SA +GHG DD+ +L LP PW+Y D Sbjct: 122 INKIDRVKSEELLALTEKMNTRHEFVETFMISAERGHGVDDLRKWLAEQLPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AEITREKL L LH+E+PY V TE WEE+KDG+ I QVIYV R K Sbjct: 182 QIADLPMRMIAAEITREKLTLRLHQELPYQLTVETESWEERKDGTARIDQVIYVSRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ +K IS A++E+ E L + VHL VKV+ +W Sbjct: 242 GIVLGHKGETMKAISKAAREELEEFLGRRVHLFTQVKVRPNW 283 >gi|294678826|ref|YP_003579441.1| GTP-binding protein Era [Rhodobacter capsulatus SB 1003] gi|294477646|gb|ADE87034.1| GTP-binding protein Era [Rhodobacter capsulatus SB 1003] Length = 303 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 141/283 (49%), Positives = 190/283 (67%), Gaps = 2/283 (0%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + +++G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ +Q+VF+DT Sbjct: 3 EETQAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVCMAGTAQLVFVDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLIL 135 PGIF + + M+ +W ADIV L++++HR L +++ + R + + L Sbjct: 63 PGIFRPRRRLDRAMVSAAWGGAADADIVVLLIEAHRGLTEGAKAIIEALKAREGTQPVAL 122 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID VK ERLL AE N KTFM+SA KG+G DD+ ++L S +P PW Y Sbjct: 123 AINKIDRVKAERLLALAEEMNAAFPFAKTFMISAEKGYGVDDLRDWLASQVPAGPWFYPE 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQI+DLPM AEITREKL L LH+E+PY V TE+WEEK DGS I Q+IYV R Sbjct: 183 DQIADLPMRMIAAEITREKLTLRLHEELPYQLTVETERWEEKPDGSARIDQIIYVSRDGH 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I+LGK G+ IK IS A+ E+AE + +P+HL L VK++++W Sbjct: 243 KGIVLGKGGETIKAISTAARAEMAEFMGRPIHLFLQVKLRENW 285 >gi|182679392|ref|YP_001833538.1| GTP-binding protein Era [Beijerinckia indica subsp. indica ATCC 9039] gi|182635275|gb|ACB96049.1| GTP-binding protein Era [Beijerinckia indica subsp. indica ATCC 9039] Length = 316 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 138/284 (48%), Positives = 188/284 (66%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VAL+GA NAGKSTL+NR VGAK+SIV+ KVQTTR +VRGI +E SQI+F+DTPG Sbjct: 8 TRCGFVALIGAPNAGKSTLINRLVGAKISIVSRKVQTTRCLVRGIATEGASQIIFVDTPG 67 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ +W AD+V L+VD+ + + + +L ++ + ++ +L+LNK Sbjct: 68 IFAPKRRLDQAMVTSAWGGAGDADVVALLVDARKGIDEEVEAILAKLPQVRAKKLLVLNK 127 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID ++P RLL A N + +TFM+SA +GHG D + N L + PW+Y DQIS Sbjct: 128 IDTIEPPRLLALAADLNARIDFSETFMISALRGHGVDKLKNLLGEMMKEGPWLYPEDQIS 187 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ AEITREK+F LH E+PY S V T W++ DGS I Q IYV R KKI+ Sbjct: 188 DAPLRMLAAEITREKIFERLHDELPYQSTVETVLWKDLPDGSARIEQTIYVMREGHKKIV 247 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G+ G+ IK I A+K+IAE EQ VHL LFVKV+++W DP+ Sbjct: 248 IGEGGRTIKAIGQAARKDIAEAAEQNVHLFLFVKVRENWTDDPE 291 >gi|296444864|ref|ZP_06886826.1| GTP-binding protein Era [Methylosinus trichosporium OB3b] gi|296257532|gb|EFH04597.1| GTP-binding protein Era [Methylosinus trichosporium OB3b] Length = 312 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 136/285 (47%), Positives = 184/285 (64%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R G VALVGA NAGKSTL+N+ VGAKVSIV+ K QTTR++VRGI ESQI+ +DTP Sbjct: 16 DTRCGFVALVGAPNAGKSTLLNQLVGAKVSIVSRKAQTTRALVRGIAISGESQIILVDTP 75 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + M+ + S AD V L++D+ R L + +++ ++ + S+ IL+LN Sbjct: 76 GIFAPKRRLERAMVASALSGAGDADAVVLLIDARRGLDAEVEEIIAKLNELSAPKILVLN 135 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D V E LL + +T+M+SA G G D+L L S + +PW+Y DQ+ Sbjct: 136 KVDVVPRESLLGLTAAVTRQADFAETYMISALNGDGVPDLLAKLASMMKPSPWLYPEDQL 195 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD P+ AEITREK+F LH E+PY S V TE W+ +KDGS I Q IYV R QKKI Sbjct: 196 SDAPLRLLAAEITREKIFERLHDELPYQSTVETESWQNQKDGSARIEQTIYVTRDGQKKI 255 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ++G+ G+ IK I A+ EI E EQ VHL LFVKV+++W DP+ Sbjct: 256 VIGEGGRTIKAIGQAARHEIQEAAEQKVHLFLFVKVRENWADDPE 300 >gi|114770107|ref|ZP_01447645.1| GTP-binding protein Era [alpha proteobacterium HTCC2255] gi|114548944|gb|EAU51827.1| GTP-binding protein Era [alpha proteobacterium HTCC2255] Length = 303 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 138/282 (48%), Positives = 195/282 (69%), Gaps = 3/282 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 ++ G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RGI ++ SQ+VF+DTPG Sbjct: 4 TKCGFVALIGEPNAGKSTLMNRIVGAKVSIVTHKVQTTRARIRGIAMQENSQLVFVDTPG 63 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILI 136 +F + K M+ +WS ADIV L+V++HR + + +L+ + KR RLIL Sbjct: 64 LFKTRRKLDKAMVAAAWSGAADADIVVLIVEAHRGITDGVEMILEGLEKRDVKGQRLILA 123 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID +K + LL + N+ + E+TFM+SA KG+G + ++L S LP P++Y D Sbjct: 124 INKIDKIKSDALLSLTQSLNQRLNFEETFMISAEKGYGVKVLQDWLSSNLPFGPYLYPED 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+D+PM AE+TREKL L LH+E+PY+ V TEKW+EKKDGS+ I QVIYV R K Sbjct: 184 QIADVPMRMIAAEMTREKLMLRLHQELPYTLTVETEKWDEKKDGSVRIEQVIYVAREGHK 243 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I LG G+ IK++S+ ++ E+ E++ + VHL L V+V+ +W Sbjct: 244 GIALGPKGETIKSVSMASRNELKEMMGREVHLFLQVRVRPNW 285 >gi|255263213|ref|ZP_05342555.1| GTP-binding protein Era [Thalassiobium sp. R2A62] gi|255105548|gb|EET48222.1| GTP-binding protein Era [Thalassiobium sp. R2A62] Length = 307 Score = 276 bits (705), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 135/282 (47%), Positives = 186/282 (65%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E +SQ+VF+DTP Sbjct: 7 GTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQSQLVFVDTP 66 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILI 136 G+F + + M+ +WS AD+V L+++SHR + + +L+ + +R + L Sbjct: 67 GLFKPRRRLDRAMVAAAWSGASDADVVVLMIESHRGITEGVEAILEALEERGGNAPVALA 126 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNKID VK E LL + N +TFM+SA KGHG D + +L +P +P++Y D Sbjct: 127 LNKIDRVKSEVLLGLTKEMNDRFDFAETFMISAEKGHGVDTLRTWLAGRIPKSPFLYPED 186 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY TE WEE+KDGS+ I QVIYV R K Sbjct: 187 QIADLPMRMIAAEMTREKLTLRLHQELPYQMTCETESWEERKDGSVKIDQVIYVMRDGHK 246 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK + A++E+ E L + VHL L VKV+ +W Sbjct: 247 GIVLGNKGETIKAVGKAAREELVEFLGRKVHLFLQVKVRPNW 288 >gi|56695595|ref|YP_165946.1| GTP-binding protein Era [Ruegeria pomeroyi DSS-3] gi|56677332|gb|AAV93998.1| GTP-binding protein Era [Ruegeria pomeroyi DSS-3] Length = 301 Score = 275 bits (703), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 138/282 (48%), Positives = 190/282 (67%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E E+QIVF+DTP Sbjct: 2 TTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRTRIRGVAMEGEAQIVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W ADIV L++++HR + + +L+ +A+ + + L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADIVVLMIEAHRGITEGVERILEGLAEIAKGRTVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V E+LL +E N +TFM+SA +GHG +D+ +L + LP +PW+Y D Sbjct: 122 INKIDRVPAEKLLGLSEALNARFEFARTFMISAERGHGVEDLRKWLAAELPESPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AEITREKL L LH+E+PY V TE WEE+KDGS I QVIYV R K Sbjct: 182 QIADLPMRMIAAEITREKLTLRLHQELPYQLTVETENWEERKDGSARIDQVIYVMRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ +K + A+ E+ E L++ VHL L VKV+ +W Sbjct: 242 GIVLGKRGETVKAVGQAARVELEEFLDRKVHLFLQVKVRPNW 283 >gi|254465678|ref|ZP_05079089.1| GTP-binding protein Era [Rhodobacterales bacterium Y4I] gi|206686586|gb|EDZ47068.1| GTP-binding protein Era [Rhodobacterales bacterium Y4I] Length = 301 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 137/282 (48%), Positives = 191/282 (67%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ++Q+VF+DTP Sbjct: 2 TTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDAQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W AD+V L+V++HR + + +L+ +A+ + L Sbjct: 62 GLFKPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVETILEGLAEIGEGRTVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V E+LL A+ N+ +TFM+SA +GHG DD+ +L LP +PW+Y D Sbjct: 122 INKIDKVPAEKLLGLAQDLNRRYAFAETFMISAERGHGVDDLRKWLAGKLPESPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TEKWEE+KDGS + Q+IYV R K Sbjct: 182 QIADLPMRMIAAEMTREKLTLRLHQELPYQLTVETEKWEERKDGSARVDQIIYVVRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK++S A+ E+ E L + VHL L VKV+ +W Sbjct: 242 GIVLGKRGETIKSVSQAARAELEEFLGRKVHLFLQVKVRPNW 283 >gi|126739722|ref|ZP_01755414.1| GTP-binding protein Era [Roseobacter sp. SK209-2-6] gi|126719368|gb|EBA16078.1| GTP-binding protein Era [Roseobacter sp. SK209-2-6] Length = 301 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 140/282 (49%), Positives = 191/282 (67%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ VRG+ E +SQIVF+DTP Sbjct: 2 STRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARVRGVAMEGDSQIVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W ADI+ L+V++HR + + +L+ +A R+ L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADIILLLVEAHRGITEGVERILEGLADIGEGRRVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ E LL + N+ +TF++SA +GHG +D+ ++ S LP PW+Y D Sbjct: 122 INKIDRVQSEVLLGLTKDLNEKFDFAETFLISAERGHGVEDLRGWIASELPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TEKWEE+KDGS I QVIYV R K Sbjct: 182 QIADLPMRMIAAEMTREKLTLRLHQELPYQMTVETEKWEERKDGSARIDQVIYVVRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK +S A++E+ E L + VHL L VKV+ +W Sbjct: 242 GIVLGKRGETIKAVSQAAREELTEFLGRKVHLFLQVKVRPNW 283 >gi|146278604|ref|YP_001168763.1| GTP-binding protein Era [Rhodobacter sphaeroides ATCC 17025] gi|145556845|gb|ABP71458.1| GTP-binding protein Era [Rhodobacter sphaeroides ATCC 17025] Length = 304 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 141/289 (48%), Positives = 187/289 (64%), Gaps = 3/289 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E E+QIVF+DT Sbjct: 3 DTTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGETQIVFVDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLI 134 PG+F + + M+ +W AD++ L+V++HR L I D +++ + + Sbjct: 63 PGLFRPRRRLDRAMVAAAWGGAADADVIVLLVEAHRGLTEGTQAIIDAMRDRIPQGQAVA 122 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 L +NKID VK E LL A+ N +TFM+SA KG+G D + +L LP PW Y Sbjct: 123 LAINKIDRVKAEVLLGLAQELNAAFPFAETFMISAEKGYGVDKLRQWLAGVLPEGPWFYP 182 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 DQI+D+PM AEITREKL L LH+E+PY V TE WE++ DGS I QV+YV R Sbjct: 183 EDQIADVPMRAIAAEITREKLTLRLHEELPYQLTVETEAWEDRPDGSTRIDQVVYVARDG 242 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I+LG G+ IK I A+ EIA LE+PVHL L VKV+ +W +P+ Sbjct: 243 HKGIVLGNKGETIKQIGQAARAEIAAFLERPVHLFLQVKVRPNWLEEPE 291 >gi|126728498|ref|ZP_01744314.1| GTP-binding protein Era [Sagittula stellata E-37] gi|126711463|gb|EBA10513.1| GTP-binding protein Era [Sagittula stellata E-37] Length = 302 Score = 272 bits (696), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 137/282 (48%), Positives = 191/282 (67%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL NR VGAKVSIVTHKVQTTR+ +RG+ E +SQ++F+DTP Sbjct: 2 TTRAGFIALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLIFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W ADIV L+V++HR + +L+ +A+ R R+ L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADIVVLLVEAHRGKTPGVDRILEGLAELPRGRRVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID VK E LL ++ N++ EKTFM+SA +G+G DD+ +L + +P PW+Y D Sbjct: 122 INKIDRVKAEELLALSQELNEIHAFEKTFMISAERGYGVDDLREWLAAEVPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TE W E++DG+ I QVIYV R K Sbjct: 182 QIADLPMRMIAAEMTREKLTLRLHQELPYQLTVETEHWTEREDGTARIDQVIYVARDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK IS A++E+ E L + VHL L VKV+++W Sbjct: 242 GIVLGHKGETIKAISKAAREELTEFLGRKVHLFLQVKVRENW 283 >gi|288958024|ref|YP_003448365.1| GTP-binding protein [Azospirillum sp. B510] gi|288910332|dbj|BAI71821.1| GTP-binding protein [Azospirillum sp. B510] Length = 301 Score = 271 bits (694), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 138/287 (48%), Positives = 188/287 (65%), Gaps = 1/287 (0%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+ R G +ALVGA NAGKSTL+N +G+KVSIV+ KVQTTR+ V GI + ++Q++F+DT Sbjct: 3 DHPRCGFIALVGAPNAGKSTLLNAMIGSKVSIVSPKVQTTRTRVLGITIQGDAQMIFVDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILI 136 PGIF K + M+ +W + AD++ ++ D S R + + ++ + ++ ILI Sbjct: 63 PGIFKPKRRLDRAMVAAAWQGAEDADVIGVLYDVSRRSIDEDTRSIVARLKEQGREAILI 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNKID VK + LL A+ + FMVSA G D+ +L LP PW + D Sbjct: 123 LNKIDLVKRDVLLGIADAFRQEGIFSDIFMVSAFTEDGVGDLKQFLADRLPEGPWHFPED 182 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QISD+PM AEITREKLFL LH+E+PYS+ V TE WEE DGS+ I QVI+V+R SQK Sbjct: 183 QISDMPMRLLAAEITREKLFLQLHQELPYSATVETEVWEEFDDGSVKISQVIFVQRESQK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I+LGK GQ IK + A+ E+ E+LE+ VHLILFVKV++ W DP+ Sbjct: 243 AIVLGKGGQRIKALGSAARTELTEMLERRVHLILFVKVREGWVDDPE 289 >gi|86135728|ref|ZP_01054307.1| GTP-binding protein Era [Roseobacter sp. MED193] gi|85826602|gb|EAQ46798.1| GTP-binding protein Era [Roseobacter sp. MED193] Length = 301 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 140/282 (49%), Positives = 191/282 (67%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ VRG+ E ESQIVF+DTP Sbjct: 2 TTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARVRGVAMEGESQIVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLILI 136 G+F + + M+ +W A+IV L+V++HR + + +L+ +A + + L+ Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADAEIVLLLVEAHRGITEGVERILEGLADVAQGRTVGLV 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ E LL + N+ +TF++SA +GHG DD+ ++L LP PW+Y D Sbjct: 122 INKIDRVQSEVLLGLTKDLNERFDFAETFLISAERGHGVDDLRSWLAQELPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AEITREKL L LH+E+PY V TE WEE+KDGS I QVIYV R K Sbjct: 182 QIADLPMRMIAAEITREKLTLRLHQELPYQMTVETENWEERKDGSAKIDQVIYVVRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK++S +++E+ E L + VHL L VKV+ +W Sbjct: 242 GIVLGKRGETIKSVSQSSREELTEFLGRKVHLFLQVKVRPNW 283 >gi|254512246|ref|ZP_05124313.1| GTP-binding protein Era [Rhodobacteraceae bacterium KLH11] gi|221535957|gb|EEE38945.1| GTP-binding protein Era [Rhodobacteraceae bacterium KLH11] Length = 302 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 136/282 (48%), Positives = 187/282 (66%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E E+Q+VF+DTP Sbjct: 2 TTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGEAQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W AD+V L+V++HR + + +L+ + + + + L Sbjct: 62 GLFKPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVERILEGLEEIGQGRTIALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V E+LL N +TFM+SA KGHG DD+ +L S LP PW+Y D Sbjct: 122 INKIDKVPSEKLLALTSDLNARYPFAETFMISAEKGHGVDDLRQWLASELPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLP+ AE+TREKL L LH+E+PY V TE WEE+KDGS I QVIYV R K Sbjct: 182 QIADLPLRMIAAEMTREKLTLRLHQELPYQLTVETENWEERKDGSAKIDQVIYVMRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK +S A+ E+ E L++ +HL L VKV+ +W Sbjct: 242 GIVLGKRGETIKAVSQAARAELEEFLDRKIHLFLQVKVRPNW 283 >gi|310815099|ref|YP_003963063.1| GTP-binding protein Era [Ketogulonicigenium vulgare Y25] gi|308753834|gb|ADO41763.1| GTP-binding protein Era [Ketogulonicigenium vulgare Y25] Length = 307 Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 134/283 (47%), Positives = 188/283 (66%), Gaps = 2/283 (0%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N+R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ++QIVF+DT Sbjct: 6 ENTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAIEGDAQIVFVDT 65 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LIL 135 PG+F + + M+ +W AD+V +++++HR L +++ + R + + L Sbjct: 66 PGLFRPRRRLDRAMVAAAWGGAGDADVVLMLIEAHRGLTDGAKAIIESLQDRVGKTPVAL 125 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID VK E LL E AN +TFM+SA +G+GCD + +L + +P +PW+Y Sbjct: 126 VINKIDRVKAEELLALTEAANAAFPFVQTFMISAERGYGCDALKGWLATEMPASPWLYPE 185 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQI+DLPM AEITREKL L LH+E+PY V TEKWEE+ DGS I Q+IYV R Sbjct: 186 DQIADLPMRMIAAEITREKLTLRLHQELPYELTVETEKWEERPDGSARIDQIIYVVRDGH 245 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I+LG+ G+ K I A+ E+ E + + HL L VKV+ +W Sbjct: 246 KGIVLGRKGETAKAIGQAARLELEEFMGRKCHLFLQVKVRPNW 288 >gi|77462221|ref|YP_351725.1| GTP-binding protein Era [Rhodobacter sphaeroides 2.4.1] gi|126461083|ref|YP_001042197.1| GTP-binding protein Era [Rhodobacter sphaeroides ATCC 17029] gi|332560102|ref|ZP_08414424.1| GTPase Era [Rhodobacter sphaeroides WS8N] gi|77386639|gb|ABA77824.1| GTP-binding protein, Era-like [Rhodobacter sphaeroides 2.4.1] gi|126102747|gb|ABN75425.1| GTP-binding protein Era [Rhodobacter sphaeroides ATCC 17029] gi|332277814|gb|EGJ23129.1| GTPase Era [Rhodobacter sphaeroides WS8N] Length = 304 Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 138/289 (47%), Positives = 187/289 (64%), Gaps = 3/289 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ++QIVF+DT Sbjct: 3 ETTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQAQIVFVDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLI 134 PG+F + + M+ +W AD++ L+V++HR L I D +++ + + Sbjct: 63 PGLFRPRRRLDRAMVAAAWGGAADADVIVLLVEAHRGLTEGTQAIIDAMRDRIPQGQTVA 122 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 L +NKID VK E LL A+ N +TFM+SA KGHG + + +L LP PW Y Sbjct: 123 LAINKIDRVKAEVLLGLAQELNGAFPFAETFMISAEKGHGVEKLRRWLAGILPEGPWFYP 182 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 DQI+D+PM AEITREKL L LH+E+PY V TE WE++ DGS I QV+YV R Sbjct: 183 EDQIADVPMRAIAAEITREKLTLRLHEELPYQLTVETEAWEDRPDGSTRIDQVVYVARDG 242 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I+LG G+ IK I A+ EIA LE+PVHL L V+V+ +W +P+ Sbjct: 243 HKGIVLGNKGETIKQIGQAARAEIATFLERPVHLFLQVRVRPNWLEEPE 291 >gi|254453314|ref|ZP_05066751.1| GTP-binding protein Era [Octadecabacter antarcticus 238] gi|198267720|gb|EDY91990.1| GTP-binding protein Era [Octadecabacter antarcticus 238] Length = 317 Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 130/283 (45%), Positives = 185/283 (65%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E +SQIVF+DTPG+ Sbjct: 19 RAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAIEGDSQIVFVDTPGL 78 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILN 138 F K + M+ +WS + AD+V L++++HR + + +L+ + + + L +N Sbjct: 79 FQPKRRLDRAMVAAAWSGVSDADVVVLMIEAHRGITKGVEAILERLGDVGKGRTIALAIN 138 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V+ LL + N+ +TF++SA KGHG + +L +P+ PW+Y DQI Sbjct: 139 KIDRVEAPVLLGLTKEMNERFAFAETFLISAEKGHGAGTLRTWLAERMPVEPWLYPEDQI 198 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +DLP+ AEITREKL L LH+E+PY V TE WEE+KDGS + Q++YV R K I Sbjct: 199 ADLPLRMIAAEITREKLTLRLHQELPYQLTVETENWEERKDGSCKVDQLVYVMRDGHKGI 258 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +LG G+ IK++ A+ E+ E L + VHL + VKV+ +W D Sbjct: 259 VLGNRGETIKSVGQAARAELVEFLGRKVHLFIQVKVRPNWLED 301 >gi|163740177|ref|ZP_02147571.1| GTP-binding protein Era [Phaeobacter gallaeciensis 2.10] gi|161386035|gb|EDQ10410.1| GTP-binding protein Era [Phaeobacter gallaeciensis 2.10] Length = 301 Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 139/282 (49%), Positives = 185/282 (65%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ESQIVF+DTP Sbjct: 2 TTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQIVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK--EIAKRSSRLILI 136 G+F + + M+ +W AD+V L+V++HR + + +L+ E ++ L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVERILEGLENIGEGRKIALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ E LL + N+ TFM+SA KGHG D + +L LP PW+Y D Sbjct: 122 INKIDRVQSEVLLGLTKDLNERYAFADTFMISAEKGHGVDHLRGWLAEQLPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TE WEE+KDGS I Q+IYV R K Sbjct: 182 QIADLPMRMIAAEMTREKLTLRLHQELPYQLTVETENWEERKDGSAKIDQLIYVMRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK +S A+ E+ E L++ VHL L VKV+ +W Sbjct: 242 GIVLGKRGETIKAVSQAARAELEEFLDRKVHLFLQVKVRPNW 283 >gi|84515164|ref|ZP_01002527.1| GTP-binding protein Era [Loktanella vestfoldensis SKA53] gi|84511323|gb|EAQ07777.1| GTP-binding protein Era [Loktanella vestfoldensis SKA53] Length = 305 Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 132/281 (46%), Positives = 186/281 (66%), Gaps = 2/281 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ + ++Q++F+DTPG Sbjct: 6 TKAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMDGQAQLIFIDTPG 65 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILIL 137 +F + + M+ +W AD+V L++++HR + + +L + R +++ L + Sbjct: 66 LFKPRRRLDRAMVAAAWGGAADADVVVLMIEAHRGMSEGVKAILANLPDRMGKTKVALAI 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID VK E LL N+ +TFM+SA +GHGCD + +L +P PW+Y DQ Sbjct: 126 NKIDKVKSEGLLALTRDMNEAFAFAETFMISAERGHGCDALRKWLVDQVPEGPWLYPEDQ 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+DLPM AE+TREKL L LH+E+PY V TE WEE+ DGS I Q+IYV R K Sbjct: 186 IADLPMRMIAAEMTREKLTLRLHQELPYELTVETENWEERPDGSARIDQLIYVARDGHKG 245 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK +S A+ EI E + +PVHL L VKV+ +W Sbjct: 246 IVLGKGGETIKQVSQAARAEIMEFVGRPVHLFLQVKVRPNW 286 >gi|254476279|ref|ZP_05089665.1| GTP-binding protein Era [Ruegeria sp. R11] gi|214030522|gb|EEB71357.1| GTP-binding protein Era [Ruegeria sp. R11] Length = 301 Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 138/282 (48%), Positives = 186/282 (65%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E +SQIVF+DTP Sbjct: 2 TTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQIVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W AD+V L+V++HR + + +L+ + R+ L Sbjct: 62 GLFRPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVERILEGLQDIGEGRRIALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ E LL + N+ +TFM+SA +GHG D + +L LP PW+Y D Sbjct: 122 INKIDRVQSEVLLGLTKDLNERYDFSETFMISAERGHGVDALRQWLAQELPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TE WEE+KDGS I QVIYV R K Sbjct: 182 QIADLPMRMIAAEMTREKLTLRLHQELPYQLTVETEHWEERKDGSAKIDQVIYVMRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK +S A+ E+ E L++ VHL L VKV+ +W Sbjct: 242 GIVLGKRGETIKAVSQAARAELEEFLDRKVHLFLQVKVRPNW 283 >gi|170749854|ref|YP_001756114.1| GTP-binding protein Era [Methylobacterium radiotolerans JCM 2831] gi|170656376|gb|ACB25431.1| GTP-binding protein Era [Methylobacterium radiotolerans JCM 2831] Length = 332 Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 133/284 (46%), Positives = 186/284 (65%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R+G VAL+G NAGKSTL+N VG KVSIV+ KVQTTR++VRGI+ E +Q+V +DTP Sbjct: 36 DARAGFVALIGVPNAGKSTLLNNLVGTKVSIVSRKVQTTRALVRGILIEGSAQVVLVDTP 95 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + M+ +WS AD VCL+VD+ + + + +L + + +LILN Sbjct: 96 GIFAPKRRLDRAMVHSAWSGAADADAVCLLVDARKGVDAEVEAVLGRLGEVKREKLLILN 155 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + ERLL+ A N +TFM+SA G G D+ L + +P PW+Y DQ+ Sbjct: 156 KIDLIPRERLLDLAAKLNAAAPFAETFMISALNGDGVADLRRALAARMPPGPWLYPEDQV 215 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD P+ AEITREK++ LH+E+PY S V T++W+ + DGS+ I Q I+VER SQ+ I Sbjct: 216 SDAPLRMLAAEITREKIYDRLHEELPYRSTVETDQWQIRPDGSVRIEQTIFVERESQRSI 275 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 +LGK GQ I++I A+ EIAE + VHL L VKV+++W DP Sbjct: 276 VLGKGGQTIRSIGQAARIEIAEAADAKVHLFLHVKVRENWADDP 319 >gi|144899861|emb|CAM76725.1| GTP-binding protein Era [Magnetospirillum gryphiswaldense MSR-1] Length = 303 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 136/279 (48%), Positives = 183/279 (65%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VGA NAGKSTL N VG KVSIV+ KVQTTR V GI+ +Q++ +DTPGI Sbjct: 10 RCGYVAIVGAPNAGKSTLTNGLVGTKVSIVSPKVQTTRFRVLGILMTGPAQVILVDTPGI 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F K + M+ +W A+I+CL+VD+HR L + ++ ++ IL+LNK+ Sbjct: 70 FQPKRRLDRAMVAAAWHGASDAEIICLMVDAHRGLDDDTRAIIDKLKGAKREAILVLNKV 129 Query: 141 DCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D VK ERLL+ A + + +F + FMVSA KG G D+ L +PL PW++ D++S Sbjct: 130 DMVKKERLLDLTARLHEEGIFTD-VFMVSALKGDGLADLSKVLSDRVPLGPWMFPEDEVS 188 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLP AEITREK F+ LH+E+PY+ V TEKWEE++DGS I QVIYV+R QK I+ Sbjct: 189 DLPQRMLAAEITREKAFIQLHEELPYALTVETEKWEEREDGSARIDQVIYVQRDGQKAIV 248 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G IKTI A+ E+ +LE+ VHL L VKV++DW Sbjct: 249 VGKGGHQIKTIGAAARTELEALLERRVHLFLHVKVREDW 287 >gi|163793043|ref|ZP_02187019.1| GTP-binding protein Era [alpha proteobacterium BAL199] gi|159181689|gb|EDP66201.1| GTP-binding protein Era [alpha proteobacterium BAL199] Length = 308 Score = 268 bits (686), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 134/289 (46%), Positives = 188/289 (65%), Gaps = 1/289 (0%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D + +R G VALVGA NAGKSTL N VGAKVSIVTHK QTTRS +RGIV +Q++ Sbjct: 7 DSPEGPTRCGFVALVGAPNAGKSTLTNSLVGAKVSIVTHKAQTTRSRIRGIVMAGATQLI 66 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-ELKVNIHDLLKEIAKRSSR 132 +DTPGIF + + M+ +W+ ADI+ LV D+ R ++ + ++ + R Sbjct: 67 LVDTPGIFKPRRRLDRAMVHAAWAGAGDADIIVLVADAARGRIEEDTQRIIDGLKANGQR 126 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +L LNK+D +K ERLL A+ ++ + FM+SA G+GCDD+ YL +P PW Sbjct: 127 AVLALNKVDGMKRERLLPIAQAYSEAFDFDSVFMISALTGNGCDDLTRYLAERMPQGPWH 186 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D++SD+PM AE+TRE++FL LH E+PY + V T+ W E+ DGS+ I Q IYVER Sbjct: 187 YPEDELSDVPMRLLAAEVTREQVFLKLHDELPYETTVETDIWTERDDGSVKIDQTIYVER 246 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQ+ I+LGK GQ I+ + A+ ++ E++E+ VHL LFVKV++DW D Sbjct: 247 ESQRMIVLGKGGQKIREVGQLARAQLEEMMERRVHLFLFVKVREDWQED 295 >gi|209964795|ref|YP_002297710.1| GTP-binding protein Era [Rhodospirillum centenum SW] gi|209958261|gb|ACI98897.1| GTP-binding protein Era [Rhodospirillum centenum SW] Length = 340 Score = 268 bits (685), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 136/288 (47%), Positives = 194/288 (67%), Gaps = 3/288 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 ++ R G +ALVGA NAGKSTL+N VGAKVSIV+ KVQTTRS V GI +SQ++F+DT Sbjct: 43 EHPRCGFIALVGAPNAGKSTLLNALVGAKVSIVSPKVQTTRSRVLGIGITGDSQLLFVDT 102 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILI 136 PGIF K + M+ +W AD++ ++ D S+ L + +++ + + IL Sbjct: 103 PGIFKPKRRLDRAMVAAAWQGATDADLIVMLYDASNDRLDEDTLGIIERLKEAGRTAILA 162 Query: 137 LNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 LNK+D +K E+LL+ AE+ + +F +TFM+SA G G D+ +L + +P PW+Y A Sbjct: 163 LNKVDLIKREKLLKLAAELDSHGIFT-RTFMISALTGDGLADLSAFLAAEVPEGPWLYPA 221 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ+SD+P AE+TREKLFL LH+E+PY++ V TE WEE DGS+ I QVIYV+R Q Sbjct: 222 DQLSDMPERLLAAEVTREKLFLQLHQELPYAATVETESWEEFDDGSVKISQVIYVQRDGQ 281 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I+LGK G IK IS A++E+ ++++ VHL LFVKV+++W DP+ Sbjct: 282 KAIVLGKGGSRIKHISTAARQELETMMDRRVHLFLFVKVRENWVDDPE 329 >gi|114765527|ref|ZP_01444635.1| GTP-binding protein Era [Pelagibaca bermudensis HTCC2601] gi|114542120|gb|EAU45152.1| GTP-binding protein Era [Roseovarius sp. HTCC2601] Length = 301 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 136/282 (48%), Positives = 187/282 (66%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL NR VGAKVSIVTHKVQTTR+ +RG+ E +SQ+VF+DTP Sbjct: 2 TTRAGFVALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W ADI+ L+V++HR + + +L+ +A + + L Sbjct: 62 GLFKPRRRLDRAMVAAAWGGAADADIIVLLVEAHRGITEGVERILEGLADLPQGRTVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ + LL+ E N+ KTFM+SA KGHG D+ +L +P +PW+Y D Sbjct: 122 INKIDRVEAKVLLKLTEDLNERYAFAKTFMISAEKGHGVKDLREWLAGEVPESPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AEITREKL L LH+E+PY V TE WEE++DGS I QVIYV R K Sbjct: 182 QIADLPMRTIAAEITREKLTLRLHQELPYQLTVETESWEERQDGSARIDQVIYVMRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG+ G+ +K I A+ E+ E L + VHL L VKV+++W Sbjct: 242 GIVLGRKGETVKAIGQAARTELEEFLGRKVHLFLQVKVRENW 283 >gi|149200804|ref|ZP_01877779.1| GTP-binding protein Era [Roseovarius sp. TM1035] gi|149145137|gb|EDM33163.1| GTP-binding protein Era [Roseovarius sp. TM1035] Length = 301 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 131/282 (46%), Positives = 189/282 (67%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E +SQ+VF+DTP Sbjct: 2 TTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQSQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLILI 136 G+F + + M+ +W AD+V L++++HR + + +L+ + + ++ L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADVVILLIEAHRGVTEGVERILEGLTGIAKGRKVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ + LL + N+ EKTF++SA +GHG DD+ +L +P PW+Y D Sbjct: 122 INKIDRVQAQVLLALTKDMNERFAFEKTFLISAERGHGVDDLRQWLAGEVPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TE WEE+KDGS I QV+YV R K Sbjct: 182 QIADLPMRMIAAEMTREKLTLRLHQELPYQLTVETENWEERKDGSARIDQVVYVVRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK +S A++E+ E L + +HL L VKV+++W Sbjct: 242 GIVLGNKGETIKAVSKAAREELEEFLGRRIHLFLQVKVRENW 283 >gi|85705113|ref|ZP_01036213.1| GTP-binding protein Era [Roseovarius sp. 217] gi|85670435|gb|EAQ25296.1| GTP-binding protein Era [Roseovarius sp. 217] Length = 301 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 135/283 (47%), Positives = 190/283 (67%), Gaps = 4/283 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E +SQ+VF+DTP Sbjct: 2 TTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQSQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH---DLLKEIAKRSSRLIL 135 G+F + + M+ +W AD+V L++++HR + + D L IAK ++ L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADVVILLIEAHRGVTEGVERILDGLSGIAK-GRKVAL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID V+ + LL + N+ EKTF++SA KGHG DD+ ++L +P PW+Y Sbjct: 121 AINKIDRVQAQVLLALTKDMNERFAFEKTFLISAEKGHGVDDLRHWLAGEVPAGPWLYPE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQI+DLPM AE+TREKL L LH+E+PY V T+ WEE+KDGS I QV+YV R Sbjct: 181 DQIADLPMRMIAAEMTREKLTLRLHQELPYQLTVETDHWEERKDGSARIDQVVYVMRDGH 240 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I+LG G+ IK +S A++E+ E L + +HL L VKV+++W Sbjct: 241 KGIVLGNKGETIKAVSKAAREELEEFLGRRIHLFLQVKVRENW 283 >gi|254440407|ref|ZP_05053901.1| GTP-binding protein Era [Octadecabacter antarcticus 307] gi|198255853|gb|EDY80167.1| GTP-binding protein Era [Octadecabacter antarcticus 307] Length = 313 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 129/283 (45%), Positives = 186/283 (65%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E +SQIVF+DTPG+ Sbjct: 15 RAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAIEGDSQIVFVDTPGL 74 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILN 138 F K + M+ +WS + +D+V L++++HR + + +L+ + + + L +N Sbjct: 75 FQPKRRLDRAMVAAAWSGVSDSDVVVLMIEAHRGITKGVEAILERLGDVGKGRTIALAIN 134 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V+ LL + N+ +TF++SA KGHG + +L +P+ PW+Y DQI Sbjct: 135 KIDRVEAPVLLGLTKEMNERFAFSETFLISAEKGHGAGTLRAWLAERMPVEPWLYPEDQI 194 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +DLP+ AEITREKL L LH+E+PY V TE WEE+KDGS + Q++YV R K I Sbjct: 195 ADLPLRIIAAEITREKLTLRLHQELPYQLTVETENWEERKDGSCKVDQLVYVMRDGHKGI 254 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +LG G+ IK++ A++E+ E L + VHL + VKV+ +W D Sbjct: 255 VLGNRGETIKSVGKAAREELVEFLGRKVHLFIQVKVRPNWLED 297 >gi|260576289|ref|ZP_05844281.1| GTP-binding protein Era [Rhodobacter sp. SW2] gi|259021557|gb|EEW24861.1| GTP-binding protein Era [Rhodobacter sp. SW2] Length = 314 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 136/288 (47%), Positives = 188/288 (65%), Gaps = 3/288 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL+N+ VGAKVSIVTHKVQTTR+ +RG+ E +QIVF+DTP Sbjct: 14 GTRAGFVALIGEPNAGKSTLLNKMVGAKVSIVTHKVQTTRARIRGVAMEGAAQIVFVDTP 73 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLIL 135 G+F + + M+ +W AD+V L++++HR L I D +++ R + L Sbjct: 74 GLFRPRRRLDRAMVAAAWGGAADADVVVLLIEAHRGLTEGTKAIIDAMRDRIPRGQTVAL 133 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID VK E LL + N+ +TFM+SA KG+G D + +L + LP PW Y Sbjct: 134 AINKIDRVKAEVLLGLSAQMNEAFPFAETFMISAEKGYGVDKLKAWLATQLPEGPWFYPE 193 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQI+DLP+ +E+TREKL L LH+E+PY V TEKWE+K DGS+ I Q+IYV R Sbjct: 194 DQIADLPLRMIASEVTREKLTLRLHEELPYQLTVETEKWEDKPDGSVRIDQIIYVARDGH 253 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I+LG G+ IK I A+ E+ E L++PVHL L VKV+ +W +P+ Sbjct: 254 KGIVLGNKGETIKVIGQAARLELVEFLDRPVHLFLQVKVRPNWLEEPE 301 >gi|163738239|ref|ZP_02145655.1| GTP-binding protein Era [Phaeobacter gallaeciensis BS107] gi|161388855|gb|EDQ13208.1| GTP-binding protein era [Phaeobacter gallaeciensis BS107] Length = 301 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/282 (48%), Positives = 184/282 (65%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ESQIVF+DTP Sbjct: 2 TTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQIVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK--EIAKRSSRLILI 136 G+F + + M+ +W AD+V L+V++HR + + +L+ E ++ L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADVVVLMVEAHRGITEGVERILEGLENIGEGRKIALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ LL + N+ TFM+SA KGHG D + +L LP PW+Y D Sbjct: 122 INKIDRVQSAVLLGLTKDLNERYAFADTFMISAEKGHGVDHLRGWLAEQLPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TE WEE+KDGS I Q+IYV R K Sbjct: 182 QIADLPMRMIAAEMTREKLTLRLHQELPYQLTVETENWEERKDGSAKIDQLIYVMRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK +S A+ E+ E L++ VHL L VKV+ +W Sbjct: 242 GIVLGKRGETIKAVSQAARAELEEFLDRKVHLFLQVKVRPNW 283 >gi|110678687|ref|YP_681694.1| GTP-binding protein Era [Roseobacter denitrificans OCh 114] gi|109454803|gb|ABG31008.1| GTP-binding protein Era [Roseobacter denitrificans OCh 114] Length = 302 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 136/282 (48%), Positives = 190/282 (67%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E +SQIVF+DTP Sbjct: 2 STRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQIVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +WS AD+V L+V++HR + + +L+ +A+ + + L Sbjct: 62 GLFQPRRRLDRAMVAAAWSGAADADVVVLLVEAHRGVTEGVERVLEGLAEVGQGRMVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ E LL ++ N+ +TFM+SA +GHG D + +L +P PW+Y D Sbjct: 122 INKIDRVQAEALLALSKDLNERYDFVETFMISAERGHGVDTLRAWLAGKVPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TE WEE+KDGS I Q+IYV R K Sbjct: 182 QIADLPMRTIAAEMTREKLTLRLHQELPYQMTVETEGWEERKDGSARIDQLIYVVRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK +S A++E+ E L + VHL L VKV+ +W Sbjct: 242 GIVLGHKGETIKAVSKAAREELEEFLGRRVHLFLQVKVRPNW 283 >gi|259417698|ref|ZP_05741617.1| GTP-binding protein Era [Silicibacter sp. TrichCH4B] gi|259346604|gb|EEW58418.1| GTP-binding protein Era [Silicibacter sp. TrichCH4B] Length = 301 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 130/282 (46%), Positives = 190/282 (67%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ESQ+VF+DTP Sbjct: 2 TTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W AD++ L++++HR + + +++ + + + R+ L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADVIVLLIEAHRGITEGVERIIENLGEVAQGRRVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ + LL + N +TFM+SA KG+G DD+ +L + +P +PW+Y D Sbjct: 122 INKIDKVQSDVLLGLTKDLNDRFSFAETFMISAEKGYGTDDLRKWLAAEVPESPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLP+ AE+TREKL L LH+E+PY V TEKWEE+KDGS I QV+YV R K Sbjct: 182 QIADLPLRMIAAEMTREKLTLRLHQELPYQLTVETEKWEERKDGSARIDQVVYVVRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK + A+ E+ E L++ +HL L VKV+ +W Sbjct: 242 GIVLGKRGETIKAVGQAARAELEEFLDRKIHLFLQVKVRPNW 283 >gi|163733861|ref|ZP_02141303.1| GTP-binding protein Era [Roseobacter litoralis Och 149] gi|161392972|gb|EDQ17299.1| GTP-binding protein Era [Roseobacter litoralis Och 149] Length = 302 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 136/282 (48%), Positives = 188/282 (66%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ESQIVF+DTP Sbjct: 2 SKRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQIVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLILI 136 G+F + + M+ +WS AD+V L++++HR + + +L+ +A + + L Sbjct: 62 GLFEPRRRLDRAMVAAAWSGAADADVVVLLIEAHRGVTEGVERILEGLADVGQGRVVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ E LL ++ N+ +TFM+SA +GHG D + +L +P PW+Y D Sbjct: 122 INKIDRVQAEVLLALSKNLNERYDFAETFMISAERGHGVDALRGWLAGMVPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TE WEE+KDGS I Q+IYV R K Sbjct: 182 QIADLPMRTIAAEMTREKLTLRLHQELPYQMTVETEGWEERKDGSARIDQLIYVIRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK +S A++E+ E L + VHL L VKV+ +W Sbjct: 242 GIVLGHKGETIKAVSKAAREELEEFLGRRVHLFLQVKVRPNW 283 >gi|306842072|ref|ZP_07474744.1| GTP-binding protein Era [Brucella sp. BO2] gi|306287822|gb|EFM59245.1| GTP-binding protein Era [Brucella sp. BO2] Length = 254 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 124/243 (51%), Positives = 167/243 (68%) Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 +RGI E +QIV +DTPGIF K + M+ +W K ADI+ +++D+ N Sbjct: 1 MRGIFIEGPAQIVLVDTPGIFRPKRRLDRAMVTTAWGGAKDADIILVIIDAQGGFNENAE 60 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 LL+ + + +L+LNK+D V P LL A+ AN+LV ++TFM+SA G GC D+ Sbjct: 61 ALLESMKDVRQKKVLVLNKVDRVDPPVLLSLAQKANELVPFDRTFMISALNGSGCKDLAK 120 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 YL ++P PW Y DQISD+PM AEITREKL+L LH+E+PY+S V TE+WEE+KDG Sbjct: 121 YLAESVPNGPWYYPEDQISDMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDG 180 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 S+ I QVIYVER SQKKI+LG G+ +K I A+KEI+EILEQ VHL LFVKV+++WG+ Sbjct: 181 SVRIEQVIYVERESQKKIVLGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVRENWGN 240 Query: 301 DPK 303 DP+ Sbjct: 241 DPE 243 >gi|260432757|ref|ZP_05786728.1| GTP-binding protein Era [Silicibacter lacuscaerulensis ITI-1157] gi|260416585|gb|EEX09844.1| GTP-binding protein Era [Silicibacter lacuscaerulensis ITI-1157] Length = 302 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 138/283 (48%), Positives = 185/283 (65%), Gaps = 4/283 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ++Q+VF+DTP Sbjct: 2 TTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDAQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH---DLLKEIAKRSSRLIL 135 G+F + + M+ +W ADI+ L+V++HR + + D L EIA+ ++ L Sbjct: 62 GLFKPRRRLDRAMVAAAWGGAADADIIVLMVEAHRGITEGVERILDGLSEIAQ-GRKVAL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID V+ LL N +TFM+SA GHG +D+ +L LP PW+Y Sbjct: 121 AINKIDRVEAPALLSLTRDLNDRFPFAETFMISAETGHGVEDLRKWLAQQLPEGPWLYPE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQI+DLP+ AEITREKL L LH+E+PY V TE WEE+KDGS I QVIYV R Sbjct: 181 DQIADLPLRMIAAEITREKLTLRLHQELPYQLTVETENWEERKDGSARIDQVIYVMRDGH 240 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I+LGK G+ IK IS A+ E+ E L++ VHL L VKV+ +W Sbjct: 241 KGIVLGKRGETIKAISQSARAELEEFLDRKVHLFLQVKVRPNW 283 >gi|149913471|ref|ZP_01902004.1| GTP-binding protein Era [Roseobacter sp. AzwK-3b] gi|149812591|gb|EDM72420.1| GTP-binding protein Era [Roseobacter sp. AzwK-3b] Length = 302 Score = 265 bits (678), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 132/282 (46%), Positives = 185/282 (65%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ESQ+VF+DTP Sbjct: 2 TTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILI 136 G+F + + M+ +W AD++ L++++HR + + +L+ + + + L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADVIVLLIEAHRGITEGVERILERLQDVGKGRTVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID VK E LL + N KTFM+SA +GHG +D+ +L +P PW+Y D Sbjct: 122 INKIDRVKSEALLRLTQDLNARFSFAKTFMISAERGHGVEDLRKWLAEQVPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AEITREKL L LH+E+PY V TE WEE++DGS I Q+IYV R K Sbjct: 182 QIADLPMRMIAAEITREKLTLRLHQELPYQLTVETEAWEEREDGSARIDQIIYVMRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK +S A++E+ E L + VHL +KV+ +W Sbjct: 242 GIILGKGGETIKAVSKAAREELEEFLGRRVHLFCQIKVRPNW 283 >gi|300023748|ref|YP_003756359.1| GTP-binding protein Era [Hyphomicrobium denitrificans ATCC 51888] gi|299525569|gb|ADJ24038.1| GTP-binding protein Era [Hyphomicrobium denitrificans ATCC 51888] Length = 312 Score = 265 bits (676), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 135/287 (47%), Positives = 186/287 (64%), Gaps = 3/287 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R G V ++G TNAGKSTLVN VG KV+IV+HKVQTTR+ +RGI E +SQIVFLDT Sbjct: 15 DRRCGFVTVLGPTNAGKSTLVNALVGTKVAIVSHKVQTTRAPIRGIAVEGQSQIVFLDTA 74 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIFN K + MI +WS ++ AD V LV+D+ ++ +++ + + I +LN Sbjct: 75 GIFNPKRRLDRAMIDAAWSGLEDADAVLLVIDAAAGPDDDVMAIVQRLKTARMKRIAVLN 134 Query: 139 KIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V KP+ L + +L F ++ FMVSA G G D+ YL + +P+ PW Y D Sbjct: 135 KIDRVEDKPKLLALAKRLDQELAF-DRIFMVSALDGKGVADLRTYLAAAVPVGPWHYGED 193 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D+PM AE+TRE ++ +LH+E+PY++ V T W+ KDGS I Q IYVER QK Sbjct: 194 DVTDVPMRTQAAEMTRECIYRYLHQELPYTTTVETMSWKTLKDGSARIEQTIYVERDGQK 253 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 KI+LGKNG IK IS A++ I E+ VHL LFVKV+++W DP+ Sbjct: 254 KIVLGKNGATIKQISSAARRSIEEMAGHRVHLFLFVKVRENWESDPE 300 >gi|46201859|ref|ZP_00054208.2| COG1159: GTPase [Magnetospirillum magnetotacticum MS-1] Length = 303 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 135/281 (48%), Positives = 188/281 (66%), Gaps = 2/281 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R G VA+VGA NAGKSTLVN VG KVSIV+ KVQTTR V GI E+Q+V +DTP Sbjct: 8 DQRCGFVAVVGAPNAGKSTLVNALVGTKVSIVSPKVQTTRFRVMGIAMVGEAQVVLVDTP 67 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + M+ +W AD +CL++D+ + ++ ++ + + IL+LN Sbjct: 68 GIFAPKKRLERAMVAAAWGGTNDADHICLLIDAAKGYDDESRAIVDKLKETKRQAILVLN 127 Query: 139 KIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D VK ++LL A++ + +F + FM+SA KG G DD+L +L + PW++ DQ Sbjct: 128 KVDLVKRDKLLGLTAQLDAEGIFTD-VFMISALKGDGIDDLLAHLGKLVSPGPWMFPEDQ 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +SDLP AEITREK F+ L++E+PYS V TEKWEEK+DGS I QVIYVER SQK Sbjct: 187 VSDLPQRLLAAEITREKAFIALYQELPYSLHVETEKWEEKEDGSARIDQVIYVERESQKP 246 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK+I A++E+ E+LE+ VHL + +KV++DW Sbjct: 247 IVLGKAGRQIKSIGASARQELEELLERRVHLFIHIKVREDW 287 >gi|323137543|ref|ZP_08072620.1| GTP-binding protein Era [Methylocystis sp. ATCC 49242] gi|322397169|gb|EFX99693.1| GTP-binding protein Era [Methylocystis sp. ATCC 49242] Length = 307 Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 136/284 (47%), Positives = 186/284 (65%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G ALVGA NAGKSTL+N+ VGAKVSIV+ K QTTR++VRGI + +QI+ +DTPG Sbjct: 11 TRCGFAALVGAPNAGKSTLLNQLVGAKVSIVSRKAQTTRALVRGIAIDGPAQIILVDTPG 70 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF K + M+ + S AD+V L+VD+ R L + +L ++A+ + IL+LNK Sbjct: 71 IFKPKRRLDRAMVASALSGATDADVVALLVDARRGLDEEVESILTQLAEVKAPKILVLNK 130 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + E+LL A N+ E+TFMVSA G G D+ + L + PW+Y DQ+S Sbjct: 131 IDVIAREKLLALAAKMNERGKFEETFMVSALTGDGVGDLRHALGKRMKPGPWLYPEDQLS 190 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ AEITRE+++ LH E+PY S V T+ W +KDGS I Q IYV R QK+I+ Sbjct: 191 DAPLRLLAAEITREQIYERLHDELPYQSTVETDSWTNQKDGSARIEQTIYVTREGQKRIV 250 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G+ G+ IK I A++EIAE EQPVHL LFVKV+++W DP+ Sbjct: 251 IGEGGKTIKAIGQAARREIAEAAEQPVHLFLFVKVRENWADDPE 294 >gi|163744854|ref|ZP_02152214.1| GTP-binding protein Era [Oceanibulbus indolifex HEL-45] gi|161381672|gb|EDQ06081.1| GTP-binding protein Era [Oceanibulbus indolifex HEL-45] Length = 302 Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 134/282 (47%), Positives = 188/282 (66%), Gaps = 4/282 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ++Q+VF+DTPG Sbjct: 3 TRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQTQLVFVDTPG 62 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILIL 137 +F + + M+ +W AD+V L++++HR + + +L+E+ + R+ L + Sbjct: 63 LFQPRRRLDRAMVAAAWGGAADADVVVLLIEAHRGMTEGVERILEELGNIAKGRRVALAI 122 Query: 138 NKIDCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID V+ LL E N + FIE TFM+SA +GHG D + ++L +P PW+Y D Sbjct: 123 NKIDRVEAPVLLGLTEKMNARFDFIE-TFMISAERGHGIDTLRHWLAGEVPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM + AEITREKL L LH+E+PY V TE WEE+ DGS I Q++YV R K Sbjct: 182 QIADLPMRNIAAEITREKLTLRLHQELPYQLTVETENWEERPDGSARIDQLVYVIRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK + A++E+ E L + VHL L VKV+ +W Sbjct: 242 GIVLGNKGETIKAVGKAAREELEEFLGRKVHLFLQVKVRANW 283 >gi|294084099|ref|YP_003550857.1| GTP-binding protein Era [Candidatus Puniceispirillum marinum IMCC1322] gi|292663672|gb|ADE38773.1| GTP-binding protein Era [Candidatus Puniceispirillum marinum IMCC1322] Length = 303 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 129/283 (45%), Positives = 188/283 (66%), Gaps = 1/283 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++G VAL+GA NAGKSTL+N VG KVSIVT KVQTTRS VRGI + +QI+F+DTPG Sbjct: 8 TKAGFVALIGAPNAGKSTLMNAMVGQKVSIVTPKVQTTRSRVRGIAMQGTAQIIFVDTPG 67 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILN 138 IF K + M++ +W + D++ L+ D + RE+ + ++++++ K + L+LN Sbjct: 68 IFTPKRRLDRAMVQAAWQGAEDGDVLLLLHDCARREIDQDTLNIIEKLKKSGRKASLVLN 127 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID ERLLE+A+ +KL E+ FMVSA G+G DD+ +L +P +P+++ + + Sbjct: 128 KIDLPPQERLLERADAMSKLYDFERIFMVSAETGNGIDDLKTWLADHMPASPYLFDPEDL 187 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD+P+ AEI REKLFL+LH+E+PY V TE WEE+ DGS + IYV R + I Sbjct: 188 SDMPLRLLAAEIMREKLFLNLHQELPYQLTVETESWEERDDGSAEVHLSIYVAREGHRGI 247 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +LGK GQ+IK I A++++ E LE+ VH+ VK +KDW D Sbjct: 248 ILGKQGQSIKRIGSAARRDLEEALERRVHVFSHVKYRKDWMDD 290 >gi|99082398|ref|YP_614552.1| GTP-binding protein Era [Ruegeria sp. TM1040] gi|99038678|gb|ABF65290.1| GTP-binding protein Era [Ruegeria sp. TM1040] Length = 301 Score = 262 bits (669), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 128/282 (45%), Positives = 188/282 (66%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E +SQ+VF+DTP Sbjct: 2 TTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W AD++ +++++HR + + +L+ + + R+ L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADVIVMLIEAHRGVTEGVERILENLGEVAEGRRVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ + LL + N +TFM+SA KG+G +D+ +L + +P PW+Y D Sbjct: 122 INKIDKVQSDVLLGLTKDLNDRFPFAETFMISAEKGYGTEDLRQWLAAEVPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLP+ AE+TREKL L LH+E+PY V TEKWEE+KDGS I QV+YV R K Sbjct: 182 QIADLPLRMIAAEMTREKLTLRLHQELPYQLTVETEKWEERKDGSARIDQVVYVVRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ IK + A+ E+ E L++ +HL L VKV+ +W Sbjct: 242 GIVLGKRGETIKAVGQAARAELEEFLDRKIHLFLQVKVRPNW 283 >gi|221641175|ref|YP_002527437.1| GTP-binding protein Era [Rhodobacter sphaeroides KD131] gi|221161956|gb|ACM02936.1| GTP-binding protein Era [Rhodobacter sphaeroides KD131] Length = 295 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 135/282 (47%), Positives = 182/282 (64%), Gaps = 3/282 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ++QIVF+DTPG+F + Sbjct: 1 MALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQAQIVFVDTPGLFRPR 60 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKID 141 + M+ +W AD++ L+V++HR L I D +++ + + L +NKID Sbjct: 61 RRLDRAMVAAAWGGAADADVIVLLVEAHRGLTEGTQAIIDAMRDRIPQGQTVALAINKID 120 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 VK E LL A+ N +TFM+SA KGHG + + +L LP PW Y DQI+D+ Sbjct: 121 RVKAEVLLGLAQELNGAFPFAETFMISAEKGHGVEKLRRWLAGILPEGPWFYPEDQIADV 180 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 PM AEITREKL L LH+E+PY V TE WE++ DGS I QV+YV R K I+LG Sbjct: 181 PMRAIAAEITREKLTLRLHEELPYQLTVETEAWEDRPDGSTRIDQVVYVARDGHKGIVLG 240 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G+ IK I A+ EIA LE+PVHL L V+V+ +W +P+ Sbjct: 241 NKGETIKQIGQAARAEIATFLERPVHLFLQVRVRPNWLEEPE 282 >gi|83311358|ref|YP_421622.1| GTP-binding protein Era [Magnetospirillum magneticum AMB-1] gi|82946199|dbj|BAE51063.1| GTPase [Magnetospirillum magneticum AMB-1] Length = 303 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 135/279 (48%), Positives = 185/279 (66%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VGA NAGKSTLVN VG KVSIV+ KVQTTR V GI E+Q+V +DTPGI Sbjct: 10 RCGFVAVVGAPNAGKSTLVNALVGTKVSIVSPKVQTTRFRVMGIAMVGEAQVVLVDTPGI 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F K + M+ +W AD +CL++D+ + ++ ++ + + IL+LNK+ Sbjct: 70 FAPKKRLERAMVAAAWGGTNDADHICLLIDAAKGYDDESRAIVDKLKETKRQAILVLNKV 129 Query: 141 DCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D VK ++LL A++ + +F + FM+SA KG G D+L +L + PW++ DQ+S Sbjct: 130 DLVKRDKLLGLTAQLDAEGIFTD-VFMISALKGDGIADLLAHLGKLVAPGPWMFPEDQVS 188 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 DLP AEITREK FL L++E+PYS V TEKWEEK DGS I QVIYVER SQK I+ Sbjct: 189 DLPQRLLAAEITREKAFLALYQELPYSLHVETEKWEEKDDGSARIDQVIYVERESQKPIV 248 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 LGK G+ IK+I A++E+ E+LE+ VHL + +KV++DW Sbjct: 249 LGKAGRQIKSIGAAARQELEELLERRVHLFIHIKVREDW 287 >gi|89069069|ref|ZP_01156450.1| GTP-binding protein Era [Oceanicola granulosus HTCC2516] gi|89045438|gb|EAR51503.1| GTP-binding protein Era [Oceanicola granulosus HTCC2516] Length = 301 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 134/282 (47%), Positives = 187/282 (66%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL NR VGAKVSIVTHKVQTTR+ +RG+ E ++QIV +DTP Sbjct: 2 TTRAGFVALIGEPNAGKSTLTNRLVGAKVSIVTHKVQTTRARIRGVALEGDAQIVLVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLI-LI 136 G+F + + M+ +W ADIV L+V++HR + + +L+ + + + R + L Sbjct: 62 GLFRPRRRLDRAMVAAAWGGAADADIVVLLVEAHRGVTKGVEAILERLDEIGTGRTVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID VK E LL A N+ +TFM+SA +GHGCDD+ +L + LP PW+Y D Sbjct: 122 INKIDRVKSEALLALAADLNERHAFAETFMISAERGHGCDDLKRWLGAHLPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLP+ AE TREKL L LH+E+PY V TE W+E++DGS+ I Q++YV R K Sbjct: 182 QIADLPLRMIAAETTREKLTLRLHQELPYQLTVETESWQEREDGSVRIDQIVYVARDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG+ G+ K +S A+ E+ E L++ VHL L VKV+ W Sbjct: 242 GIVLGRKGETAKAVSTAARAELEEFLDRRVHLFLQVKVRPGW 283 >gi|159042757|ref|YP_001531551.1| GTP-binding protein Era [Dinoroseobacter shibae DFL 12] gi|189037268|sp|A8LLE0|ERA_DINSH RecName: Full=GTPase Era gi|157910517|gb|ABV91950.1| GTP-binding protein Era [Dinoroseobacter shibae DFL 12] Length = 308 Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 134/282 (47%), Positives = 185/282 (65%), Gaps = 3/282 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G VAL+G NAGKSTL N VGAKVSIVTHKVQTTR+ +RG+ E +QIVF+DTPG Sbjct: 8 TRAGFVALIGEPNAGKSTLTNAMVGAKVSIVTHKVQTTRARIRGVALEGAAQIVFVDTPG 67 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LILI 136 +F + + M+ +W ADIV L+V++HR + + +L+ + +R + L Sbjct: 68 LFRPRRRLDRAMVAAAWGGAADADIVVLMVEAHRGMTDGVRAILETLNERRDPKQIVALA 127 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID VK E LL+ + N +TFM+SA KG+G D+ +L ++LP PW+Y D Sbjct: 128 INKIDRVKSEVLLKLTQDLNAAYPFAETFMISAEKGYGVADLRAWLGASLPEGPWMYPED 187 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+D+P+ AEITREKL L LH+E+PY V TE WEE+KDGS+ I QV+YV R K Sbjct: 188 QIADVPLRMIAAEITREKLTLRLHQELPYQLTVETENWEERKDGSVRIDQVVYVMRDGHK 247 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ K +S A++E+ E L + VHL L VKV+ +W Sbjct: 248 GILLGHKGETAKAVSKAAREELVEFLGRKVHLFLQVKVRPNW 289 >gi|126733740|ref|ZP_01749487.1| GTP-binding protein Era [Roseobacter sp. CCS2] gi|126716606|gb|EBA13470.1| GTP-binding protein Era [Roseobacter sp. CCS2] Length = 305 Score = 259 bits (661), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 129/281 (45%), Positives = 189/281 (67%), Gaps = 2/281 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ + +Q++F+DTPG Sbjct: 6 TKAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMAENAQLIFIDTPG 65 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILIL 137 +F + + MI +W AD+V L++++HR + + +L+ +++R+ + + L + Sbjct: 66 LFKPRRRLDRAMIAAAWGGAADADVVVLMIEAHRGVTDGVKAILETLSERAGKSPVALAI 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID VK E LL + N +TFM+SA +GHGCD + ++L + +P P++Y DQ Sbjct: 126 NKIDKVKSEVLLALTQQMNDAYPFAETFMISAERGHGCDALRDWLTTQVPEGPFLYPEDQ 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+DLPM AE+TREKL L LH+E+PY V TE WEE+ DGS I Q+IYV R K Sbjct: 186 IADLPMRMIAAEMTREKLTLRLHQELPYELTVETENWEERPDGSARIDQLIYVARDGHKG 245 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G+ +K IS ++ E+ E L + VHL + VKV+ +W Sbjct: 246 IVLGKGGETVKAISQASRLELEEFLGRRVHLFVKVKVRPNW 286 >gi|83855026|ref|ZP_00948556.1| GTP-binding protein Era [Sulfitobacter sp. NAS-14.1] gi|83941549|ref|ZP_00954011.1| GTP-binding protein Era [Sulfitobacter sp. EE-36] gi|83842869|gb|EAP82036.1| GTP-binding protein Era [Sulfitobacter sp. NAS-14.1] gi|83847369|gb|EAP85244.1| GTP-binding protein Era [Sulfitobacter sp. EE-36] Length = 302 Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 130/282 (46%), Positives = 187/282 (66%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E ESQ+VF+DTP Sbjct: 2 TTRAGFIALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGESQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W AD+V L+++++R + + +L+ +A + ++ L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADVVILLIEANRGITEGVERILEGLADIGQGRKVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ LL ++ N +TFM+SA +GHG D + ++L LP PW+Y D Sbjct: 122 INKIDRVEAPVLLGLSKEMNDRYDFAETFMISAERGHGVDTLRHWLAGELPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TE WEE+KDGS + Q+IYV R K Sbjct: 182 QIADLPMRMIAAEMTREKLTLRLHQELPYQLTVETENWEERKDGSARVDQLIYVVRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK +S +++E+ E L + VHL L VKV+ +W Sbjct: 242 GIVLGSKGETIKAVSKASREELEEFLGRKVHLFLQVKVRPNW 283 >gi|167645702|ref|YP_001683365.1| GTP-binding protein Era [Caulobacter sp. K31] gi|167348132|gb|ABZ70867.1| GTP-binding protein Era [Caulobacter sp. K31] Length = 329 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 188/297 (63%), Gaps = 14/297 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+R+G A++GA NAGKSTLVNR VGAKVSIVT KVQTTR VRG+ ++QIV +DTP Sbjct: 20 NTRAGFAAIIGAPNAGKSTLVNRMVGAKVSIVTQKVQTTRFPVRGVAMTGQTQIVLVDTP 79 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV--------------NIHDLLK 124 GIF + + M+R +WS + +++V +VD EL ++ +++ Sbjct: 80 GIFTPRRRLDRAMVRSAWSGAEDSEVVVHLVDVQAELASRERRASAGEHRSVQDVQTIIE 139 Query: 125 EIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + + ++IL LNKID VK E LL A + + FM+SA+ G G DD++ L S Sbjct: 140 GLKASNRQVILALNKIDGVKRETLLAVAHDLYETGVYSEVFMISASTGAGVDDLMAKLAS 199 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI 244 +P PW+Y DQ +DLP AEITREK++L +H+E+PY++ V T +EE+ DGS I Sbjct: 200 LMPEGPWLYPEDQTADLPARLLAAEITREKIYLRVHEELPYAASVETTAFEERPDGSARI 259 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 Q IYVER Q+ I+LGK G+ IK I +++E+ +IL++ +HL L VKV+++W + Sbjct: 260 EQTIYVERDGQRAIVLGKGGEVIKWIGKSSREELEDILDRKIHLFLHVKVKENWAEE 316 >gi|197105332|ref|YP_002130709.1| GTP-binding protein Era [Phenylobacterium zucineum HLK1] gi|196478752|gb|ACG78280.1| GTP-binding protein Era [Phenylobacterium zucineum HLK1] Length = 326 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 132/293 (45%), Positives = 184/293 (62%), Gaps = 14/293 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR+G A++GA NAGKSTL NR VGAKVSIVT KVQTTR VRG+ ++QIV +DTPG Sbjct: 18 SRAGFCAIIGAPNAGKSTLTNRLVGAKVSIVTQKVQTTRFPVRGVAIAGDAQIVLVDTPG 77 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---------HRELKVNIHDLLKEIAKRS 130 IF + + M+R +W + AD V +VD+ R+ + ++ +++ + K Sbjct: 78 IFQPRRRLDRAMVRAAWGGAEDADAVVHLVDAAAQLGDKPADRKAQADVDSIVEGLKKSG 137 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++IL LNKID VK E LL+ ++ ++ FMVSAT G G +D+ L + +P P Sbjct: 138 RKVILALNKIDAVKREALLDISKTLFDTGVYDEVFMVSATSGSGVEDLKARLAALMPDNP 197 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK-----DGSILIR 245 W Y DQ +DLP AEITREKL+L LH+E+PYS+ V T K+EE+ DG + I Sbjct: 198 WFYPEDQTADLPARLLAAEITREKLYLRLHEELPYSATVETTKFEERPAPPDGDGGVRIE 257 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 Q I+VER Q+ I+LGK GQ +K I +A++E+ IL++PVHL L V V + W Sbjct: 258 QTIFVEREGQRPIVLGKGGQTLKWIGQKAREELTAILDRPVHLFLHVAVDERW 310 >gi|329850745|ref|ZP_08265590.1| GTP-binding protein Era [Asticcacaulis biprosthecum C19] gi|328841060|gb|EGF90631.1| GTP-binding protein Era [Asticcacaulis biprosthecum C19] Length = 317 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 130/306 (42%), Positives = 190/306 (62%), Gaps = 17/306 (5%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R G VA++GA NAGKSTLVN+ VG KVSIVT KVQTTR VRGI ++E Q++ +DTP Sbjct: 5 STRCGFVAIIGAPNAGKSTLVNQLVGTKVSIVTQKVQTTRFPVRGIALDEEVQMILVDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV-----------------NIHD 121 GIF + + M+ +W + AD V L+VD+ +L V ++ Sbjct: 65 GIFKPRRRLDRAMVASAWGGAEDADCVVLLVDAAAQLAVKGGGEVKATGADHKAVEDVEM 124 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 +++ + + + IL LNKID +K E LL A+ +E M+SA KGHG D+ Sbjct: 125 IVEGLKSANRKAILALNKIDLMKSENLLAIADDLYNTGIVEDVLMISAEKGHGVKDLKKL 184 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS 241 L +P +PW+Y DQ +D P+ AEITREKLFL +H+E+PY++ VVT ++ +K DGS Sbjct: 185 LAKRMPQSPWLYPEDQAADAPVRILAAEITREKLFLRVHEELPYAAAVVTTEFVDKPDGS 244 Query: 242 ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + I Q I+VER Q+ I+LGK GQ +K I ++++E+ ++L++PVHL L VKV++ W D Sbjct: 245 VRIEQTIFVERDGQRAIVLGKGGQTLKWIGQKSREELGKLLDRPVHLFLTVKVEEKWSDD 304 Query: 302 PKCCPQ 307 Q Sbjct: 305 RALYAQ 310 >gi|260425485|ref|ZP_05779465.1| GTP-binding protein Era [Citreicella sp. SE45] gi|260423425|gb|EEX16675.1| GTP-binding protein Era [Citreicella sp. SE45] Length = 301 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 127/282 (45%), Positives = 185/282 (65%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G +AL+G NAGKSTL NR VGAKVSIVTHKVQTTR+ +RG+ E +SQ++F+DTP Sbjct: 2 TTRAGFIALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLIFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + + M+ +W ADI+ L++++HR + + +++ +A+ R ++ L Sbjct: 62 GLFKPRRRLDRAMVAAAWGGAADADIIVLLIEAHRGITEGVERIIEGLAELPRGRKVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ LL ++ N TFM+SA +G+G D+ +L +P +PW+Y D Sbjct: 122 INKIDRVEAPVLLALSKDLNDRYAFANTFMISAERGYGVADLRKWLAEEVPESPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TE W+E++DGS I Q+IYV R K Sbjct: 182 QIADLPMRMIAAEMTREKLTLRLHQELPYQLTVETEHWQEREDGSARIDQIIYVSRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK I A+ EI E L + +HL L VKV+++W Sbjct: 242 GIVLGHKGETIKAIGQAARAEIEEFLGRKIHLFLQVKVRENW 283 >gi|254487127|ref|ZP_05100332.1| GTP-binding protein Era [Roseobacter sp. GAI101] gi|214043996|gb|EEB84634.1| GTP-binding protein Era [Roseobacter sp. GAI101] Length = 302 Score = 254 bits (650), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 130/282 (46%), Positives = 186/282 (65%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL+NR VGAKVSIVTHKVQTTR+ +RG+ E SQ+VF+DTP Sbjct: 2 TTRAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGASQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILI 136 G+F + + M+ +W AD+V L+++++R + + +L+ + ++ L Sbjct: 62 GLFQPRRRLDRAMVAAAWGGAADADVVVLLIEANRGITEGVERILEGLDGIGEGRKVALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V+ LL ++ N+ +TFM+SA +GHG D + +L LP +PW+Y D Sbjct: 122 INKIDRVEAPVLLGLSKEINERFPFAETFMISAERGHGVDALRTWLAGELPESPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLPM AE+TREKL L LH+E+PY V TE WEE+KDG+ I Q+IYV R K Sbjct: 182 QIADLPMRMIAAEMTREKLILRLHQELPYQLTVETENWEERKDGTARIDQLIYVIRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK++S A++E+ E L + VHL L VKV+ +W Sbjct: 242 GIVLGHKGETIKSVSKAAREELEEFLGRKVHLFLQVKVRPNW 283 >gi|254459845|ref|ZP_05073261.1| GTP-binding protein Era [Rhodobacterales bacterium HTCC2083] gi|206676434|gb|EDZ40921.1| GTP-binding protein Era [Rhodobacteraceae bacterium HTCC2083] Length = 302 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 130/282 (46%), Positives = 181/282 (64%), Gaps = 2/282 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL NR VGAKVSIVTHKVQTTR+ +RG+ E SQ+VF+DTP Sbjct: 2 QTRAGFVALIGEPNAGKSTLTNRMVGAKVSIVTHKVQTTRARIRGVALEGASQLVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILI 136 G+F + M+ +W AD+V L+++++R + + +L+ + ++ L Sbjct: 62 GLFKPTRRLDRAMVAAAWGGAADADVVVLMIEANRGVTEGVERILEGLQDFGEHRKIALA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID +K E LL +E N+ TFM+SA +GHG D + +L +P PW+Y D Sbjct: 122 INKIDRIKSEALLALSEKMNEAYPFVATFMISAERGHGVDALKEWLAGEVPEGPWLYPED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DLP+ AE+TREKL L LH+E+PY V TE WEE+KDGS I Q+IYV R K Sbjct: 182 QIADLPLRMIAAEMTREKLTLRLHQELPYQLTVETEAWEERKDGSCKIDQLIYVMRDGHK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LG G+ IK + A++E+ E L + VHL L VKV+ +W Sbjct: 242 GIVLGNKGETIKAVGKAAREELVEFLGRKVHLFLQVKVRPNW 283 >gi|99034984|ref|ZP_01314786.1| hypothetical protein Wendoof_01000391 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 294 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 130/281 (46%), Positives = 185/281 (65%), Gaps = 3/281 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKSTL+N +G K++IVT KVQTTR+ +RG+ + +QIVF D+PGIF+A+ Sbjct: 9 VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQIVFTDSPGIFSAE 68 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK--VNIHDLLKEIAKRSSRLILILNKIDC 142 K +++ +WS +K +DI L+VD LK I + + + R IL++NK D Sbjct: 69 TKLEKALVKSAWSAVKDSDITLLLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 VK L E N L EK FM+SA K G D++NYL ++PW Y DQI+D Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVASVSPWFYEEDQITDSS 188 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 +AEITREKLFL+L +E+PYS+ V+TE++EEKKD S++I+Q+I+V + S KKI+LGK Sbjct: 189 TNFLSAEITREKLFLNLREELPYSTAVITEQFEEKKDKSLVIKQIIFVLKDSHKKIVLGK 248 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G NIK I++EA+ E+ ++ E VHL LFVKV + W P+ Sbjct: 249 DGSNIKKINIEARAELEKLFECKVHLFLFVKV-RPWIDRPE 288 >gi|225630483|ref|YP_002727274.1| GTP-binding protein Era [Wolbachia sp. wRi] gi|225592464|gb|ACN95483.1| GTP-binding protein Era [Wolbachia sp. wRi] Length = 294 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 129/281 (45%), Positives = 185/281 (65%), Gaps = 3/281 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKSTL+N +G K++IVT KVQTTR+ +RG+ + +Q+VF D+PGIF+A+ Sbjct: 9 VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK--VNIHDLLKEIAKRSSRLILILNKIDC 142 K +++ +WS +K +DI L+VD LK I + + + R IL++NK D Sbjct: 69 TKLEKALVKSAWSAVKDSDITLLLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 VK L E N L EK FM+SA K G D++NYL ++PW Y DQI+D Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVASVSPWFYEEDQITDSS 188 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 +AEITREKLFL+L +E+PYS+ V+TE++EEKKD S++I+Q+I+V + S KKI+LGK Sbjct: 189 TNFLSAEITREKLFLNLREELPYSTAVITEQFEEKKDKSLVIKQIIFVLKDSHKKIVLGK 248 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G NIK I++EA+ E+ ++ E VHL LFVKV + W P+ Sbjct: 249 DGSNIKKINIEARAELEKLFECKVHLFLFVKV-RPWIDRPE 288 >gi|225631158|ref|ZP_03787866.1| GTP-binding protein Era [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591145|gb|EEH12319.1| GTP-binding protein Era [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 294 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 129/281 (45%), Positives = 185/281 (65%), Gaps = 3/281 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKSTL+N +G K++IVT KVQTTR+ +RG+ + +Q+VF D+PGIF+A+ Sbjct: 9 VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK--VNIHDLLKEIAKRSSRLILILNKIDC 142 K ++R +WS +K +DI L+VD LK I + + + R IL++NK D Sbjct: 69 TKLEKALVRSAWSAVKDSDITLLLVDVSHYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 VK L E N L EK FM+SA K G D++NYL ++PW Y DQI+D Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVASVSPWFYEEDQITDSS 188 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 +AEITREKLFL+L +E+PYS+ V+TE++EEKKD S++I+Q+I+V + + KKI+LGK Sbjct: 189 TNFLSAEITREKLFLNLREELPYSTAVITEQFEEKKDKSLVIKQIIFVLKDNHKKIVLGK 248 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G NIK I++EA+ E+ ++ E VHL LFVKV + W P+ Sbjct: 249 DGSNIKKINIEARAELEKLFECKVHLFLFVKV-RPWIDRPE 288 >gi|42520585|ref|NP_966500.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410324|gb|AAS14434.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila melanogaster] Length = 294 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 129/281 (45%), Positives = 184/281 (65%), Gaps = 3/281 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKSTL+N +G K++IVT KVQTTR+ +RG+ + +QIVF D+PGIF+A+ Sbjct: 9 VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQIVFTDSPGIFSAE 68 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK--VNIHDLLKEIAKRSSRLILILNKIDC 142 K +++ +WS +K +DI +VD LK I + + + R IL++NK D Sbjct: 69 TKLEKALVKSAWSAVKDSDITLSLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 VK L E N L EK FM+SA K G D++NYL ++PW Y DQI+D Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVASVSPWFYEEDQITDSS 188 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 +AEITREKLFL+L +E+PYS+ V+TE++EEKKD S++I+Q+I+V + S KKI+LGK Sbjct: 189 TNFLSAEITREKLFLNLREELPYSTAVITEQFEEKKDKSLVIKQIIFVLKDSHKKIVLGK 248 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G NIK I++EA+ E+ ++ E VHL LFVKV + W P+ Sbjct: 249 DGSNIKKINIEARAELEKLFECKVHLFLFVKV-RPWIDRPE 288 >gi|315499945|ref|YP_004088748.1| gtp-binding protein era [Asticcacaulis excentricus CB 48] gi|315417957|gb|ADU14597.1| GTP-binding protein Era [Asticcacaulis excentricus CB 48] Length = 323 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 127/307 (41%), Positives = 185/307 (60%), Gaps = 18/307 (5%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G A++GA NAGKSTLVN VG+KVSIVT KVQTTR VRGI ++QIV +DTP Sbjct: 10 TTRAGFAAIIGAPNAGKSTLVNALVGSKVSIVTQKVQTTRFPVRGIAIHGKAQIVLVDTP 69 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV------------------NIH 120 GIF + + M++ +W + ADIV +++D+ L V + Sbjct: 70 GIFKPRRRLDRAMVKSAWGGAEDADIVVMLIDAPAHLAVHFPAPDTKPTGADKLAVEDAE 129 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 ++ + + R IL+LNKID ++ + LL A+ K ++ FM+SA KG+G D++ Sbjct: 130 TIIAGLKANNRRAILVLNKIDLLRRDNLLALADSLFKEGVFDQVFMISAEKGNGISDLME 189 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 L +P PW+Y DQ +D P+ AEITREKLFL +H+E+PY+ VVT +++ DG Sbjct: 190 ALADKMPSGPWLYPEDQAADAPVRILAAEITREKLFLRVHEELPYACAVVTTDFKDMPDG 249 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + I Q I+VER Q+ I+LGKNGQ +K I A++E+ +IL++ VHL L V+V + W Sbjct: 250 AARIEQTIFVERDGQRAIVLGKNGQTLKWIGQRARQELMDILDRKVHLFLHVQVNERWSD 309 Query: 301 DPKCCPQ 307 D Q Sbjct: 310 DRALYAQ 316 >gi|254418675|ref|ZP_05032399.1| GTP-binding protein Era [Brevundimonas sp. BAL3] gi|196184852|gb|EDX79828.1| GTP-binding protein Era [Brevundimonas sp. BAL3] Length = 315 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 182/295 (61%), Gaps = 14/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R+G A++GA NAGKSTLVNR G+KVSIVT KVQTTR VRGI E ++QIV +DT Sbjct: 5 ENQRAGFAAIIGAPNAGKSTLVNRLTGSKVSIVTQKVQTTRFPVRGIAMEGDAQIVLVDT 64 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH--------------RELKVNIHDLL 123 PGIF + + M+ +W + AD+V ++D+ R + ++ Sbjct: 65 PGIFTPRRRLDRAMVASAWGGAQDADVVVHLIDAQSHINAEGREGTAADRRSAEDTETII 124 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + +++IL LNKID ++ + LL ++ + ++ +M+SA G G +D+ L Sbjct: 125 ANLQSTGTKVILALNKIDGMRRDTLLALSQTLFESGVYDEVYMISAANGDGVEDLKQRLA 184 Query: 184 STLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL 243 ++P PW+Y DQ +D+P+ AEITREK++L +H+E+PYS+ V T +E++ DGS Sbjct: 185 RSMPKGPWLYPEDQAADVPVRVLAAEITREKVYLRVHEELPYSAAVETTSFEDRADGSAR 244 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I Q IYVER SQ+ I+LGK GQ +K I +A++E+ EIL + VHL L VKV W Sbjct: 245 IEQTIYVERESQRPIVLGKGGQTLKWIGQKAREELNEILGRQVHLFLTVKVDPKW 299 >gi|329890078|ref|ZP_08268421.1| GTP-binding protein Era [Brevundimonas diminuta ATCC 11568] gi|328845379|gb|EGF94943.1| GTP-binding protein Era [Brevundimonas diminuta ATCC 11568] Length = 321 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 182/301 (60%), Gaps = 15/301 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 R+G A++GA NAGKSTLVNR G+KVSIVT KVQTTR VRGI + ++QIV +DTP Sbjct: 12 GQRAGFAAIIGAPNAGKSTLVNRLTGSKVSIVTQKVQTTRFPVRGIAIKGDAQIVLVDTP 71 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH--------------RELKVNIHDLLK 124 GIF + + M+ +W + AD+V ++D+ R + ++ Sbjct: 72 GIFTPRRRLDRAMVASAWGGAQDADVVVHLIDAQSHIDAEGREGTAADRRSAEDTETIIA 131 Query: 125 EIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + +++IL LNKID ++ + LL ++ + + FM+SA G G DD+ L Sbjct: 132 NLKATDTKVILALNKIDGMRRDTLLALSQRLFETGVYSEVFMISALSGDGVDDLKTRLAL 191 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI 244 +P PW+Y DQ +D+P+ AEITREK++L +H+E+PYS+ V T +E+K DGS I Sbjct: 192 AMPEGPWLYPEDQSADVPLRVLAAEITREKVYLRVHEELPYSAAVETTSFEDKADGSARI 251 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 Q IYVER SQ+ I+LGK GQ +K I +A++E+ EIL++PVHL L VKV W D K Sbjct: 252 EQTIYVERESQRPIVLGKGGQTLKWIGQKAREELIEILDRPVHLFLTVKVDPKW-QDSKA 310 Query: 305 C 305 Sbjct: 311 L 311 >gi|304321234|ref|YP_003854877.1| GTP-binding protein Era [Parvularcula bermudensis HTCC2503] gi|303300136|gb|ADM09735.1| GTP-binding protein Era [Parvularcula bermudensis HTCC2503] Length = 324 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 15/298 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G V ++GA NAGKST VN+ VGAKVSIVTHKVQTTR+ +RGI + +Q+VF+DTPG Sbjct: 8 TRAGIVTVLGAPNAGKSTFVNQMVGAKVSIVTHKVQTTRTRIRGIAMAERTQMVFVDTPG 67 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-------- 131 IF + + + M+ +W AD+ L+VD+ L + D ++RS+ Sbjct: 68 IFVPRRTLDRAMVAAAWEGTDGADVTLLLVDAPAYLAMVNEDTADPASRRSAEDTDGIVA 127 Query: 132 -------RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + +L+LNKID + LL AE N+ TFM+SA K G + + +L Sbjct: 128 RLKEAGQKAVLVLNKIDRMPRPPLLLLAETLNQEGVFTDTFMISAKKDLGTEGLRQFLIE 187 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI 244 +P P++Y DQ+SD+ AEITREKLFL LH+E+PYS V TE+W G + I Sbjct: 188 RMPEGPYLYPEDQLSDITDRLMAAEITREKLFLRLHQELPYSLTVETEEWGRTGKGELRI 247 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 Q IYVER QK ++LG+ G+ I + A++++AE+L + VHL LFVKV+++W DP Sbjct: 248 GQTIYVERDGQKALVLGQKGKTIAAVGKAAREDLAEMLGETVHLFLFVKVRENWTDDP 305 >gi|84684000|ref|ZP_01011902.1| GTP-binding protein Era [Maritimibacter alkaliphilus HTCC2654] gi|84667753|gb|EAQ14221.1| GTP-binding protein Era [Rhodobacterales bacterium HTCC2654] Length = 306 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 129/283 (45%), Positives = 183/283 (64%), Gaps = 4/283 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G VAL+G NAGKSTL N VGAKVSIVTHKVQTTR+ +RG+ E +SQIV +DTP Sbjct: 6 TTRAGFVALIGEPNAGKSTLTNHLVGAKVSIVTHKVQTTRARIRGVALEGDSQIVLVDTP 65 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH---DLLKEIAKRSSRLIL 135 G+F + + M+ +W A+++ L++++HR + + D L E+A R+ + L Sbjct: 66 GLFKPRRRLDRAMVAAAWGGAADAEVIVLLIEAHRGVTKGVETILDHLPEVA-RNRPVAL 124 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID V + LL + N+ +TFM+SA KG+G D+ +L +P +PW+Y Sbjct: 125 AINKIDKVSSDVLLGLTQDMNERFPFVETFMISAEKGYGVADLKTWLAGMMPESPWLYPE 184 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQI+DLPM AE+TREKL L LH+E+PY V TE WEE+ DGS + Q++YV R Sbjct: 185 DQIADLPMRMIAAEMTREKLTLRLHQELPYQLTVETEHWEERPDGSARVDQIVYVARDGH 244 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I+LGK G+ IK +S A+ E+ E L + +HL L VKV+ +W Sbjct: 245 KGIVLGKKGETIKAVSQAARAELEEFLGRKIHLFLQVKVRPNW 287 >gi|221234570|ref|YP_002517006.1| GTP-binding protein Era [Caulobacter crescentus NA1000] gi|13959353|sp|P58071|ERA_CAUCR RecName: Full=GTPase Era gi|254783291|sp|B8H630|ERA_CAUCN RecName: Full=GTPase Era gi|220963742|gb|ACL95098.1| GTP-binding protein era [Caulobacter crescentus NA1000] Length = 316 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 185/296 (62%), Gaps = 14/296 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G A++GA NAGKSTLVNR VGAKVSIVT KVQTTR VRG+ E ++QIV +DTPG Sbjct: 8 TRAGFAAIIGAPNAGKSTLVNRMVGAKVSIVTQKVQTTRFPVRGVAIEGDTQIVLVDTPG 67 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV--------------NIHDLLKE 125 IF+ + + M+R +W+ + A+ +VD EL ++ +++ Sbjct: 68 IFSPRRRLDRAMVRAAWAGSEEAEATVHLVDVQAELASRADKATPGEYRSAQDVQTIIEG 127 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + ++IL LNKID +K + LL A+ FM+SA+ G G +D+ L S Sbjct: 128 LKAADRKVILALNKIDGIKRDTLLAVAKDFFDTGVYSDVFMISASTGAGVEDLTAKLVSM 187 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 +P PW+Y DQ +DLP AEITREK++L +H+E+PY++ V T +EE+KDGS+ I Sbjct: 188 MPEGPWLYPEDQTADLPARLLAAEITREKVYLRVHEELPYAATVETTAFEERKDGSVRIE 247 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 Q I VER Q+ I++GK GQ +K I +++E+ +IL++ VHL L VKV+++W + Sbjct: 248 QTILVEREGQRVIVIGKGGQTLKWIGQASREELCDILDRKVHLFLHVKVKENWAEE 303 >gi|295690017|ref|YP_003593710.1| GTP-binding protein Era [Caulobacter segnis ATCC 21756] gi|295431920|gb|ADG11092.1| GTP-binding protein Era [Caulobacter segnis ATCC 21756] Length = 316 Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 183/297 (61%), Gaps = 14/297 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G A++GA NAGKSTLVNR VGAKVSIVT KVQTTR VRG+ ++QIV +DTP Sbjct: 7 QTRAGFAAIIGAPNAGKSTLVNRMVGAKVSIVTQKVQTTRFPVRGVAIAGDTQIVLVDTP 66 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV--------------NIHDLLK 124 GIF+ + + M+R +W+ + A+ +VD EL ++ +++ Sbjct: 67 GIFSPRRRLDRAMVRAAWAGSEEAEATVHLVDVQAELASRADKATPGEYRSAQDVQTIIE 126 Query: 125 EIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + ++IL LNKID +K + LL A+ FM+SA G G DD+ L + Sbjct: 127 GLKAADRKVILALNKIDGIKRDTLLAIAKDFFDTGVYTDVFMISAQTGAGVDDLTAKLVT 186 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI 244 +P PW+Y DQ +DLP AEITREK++L +H+E+PY++ V T +EE+KDGS+ I Sbjct: 187 MMPEGPWLYPEDQTADLPARLLAAEITREKVYLRVHEELPYAAMVETTAFEERKDGSVRI 246 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 Q I VER Q+ I++GK GQ +K I A++E+ EIL++ VHL L VKV+++W + Sbjct: 247 EQTILVERDGQRVIVIGKGGQTLKWIGQAAREELCEILDRKVHLFLHVKVKENWAEE 303 >gi|302383080|ref|YP_003818903.1| GTP-binding protein Era [Brevundimonas subvibrioides ATCC 15264] gi|302193708|gb|ADL01280.1| GTP-binding protein Era [Brevundimonas subvibrioides ATCC 15264] Length = 315 Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 182/294 (61%), Gaps = 14/294 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R+G A++GA NAGKSTLVNR G+KVSIVT KVQTTR VRGI E ESQIV +DTP Sbjct: 6 NPRAGFAAIIGAPNAGKSTLVNRLTGSKVSIVTQKVQTTRFPVRGIAMEGESQIVLVDTP 65 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD--SH------------RELKVNIHDLLK 124 GIF + + M+ +W + AD+V ++D SH R + ++ Sbjct: 66 GIFTPRRRLDRAMVASAWGGAQDADVVVHLIDAASHIASAGKEGEAADRRSAEDTETIIA 125 Query: 125 EIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + ++++IL LNKID ++ + LL + + + +M+SA G G DD+ L Sbjct: 126 NLKASNTQVILALNKIDGMRRDTLLALSHALFETGVYSEVYMISALSGDGVDDLKQRLAL 185 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI 244 ++P W+Y DQ +D+P+ AEITREK++L +H+E+PYS+ V T ++EK DGS I Sbjct: 186 SMPEGHWLYPEDQSADVPIRVLAAEITREKVYLRVHEELPYSAAVETTAFDEKADGSARI 245 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 Q IYVER SQ+ I+LGK GQ +K I ++++E+ E+L++PVHL L VKV W Sbjct: 246 EQTIYVERESQRPIVLGKGGQTLKWIGQKSREELTELLDRPVHLFLTVKVDPKW 299 >gi|16125809|ref|NP_420373.1| GTP-binding protein Era [Caulobacter crescentus CB15] gi|13422951|gb|AAK23541.1| GTP-binding protein Era [Caulobacter crescentus CB15] Length = 333 Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 185/296 (62%), Gaps = 14/296 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G A++GA NAGKSTLVNR VGAKVSIVT KVQTTR VRG+ E ++QIV +DTPG Sbjct: 25 TRAGFAAIIGAPNAGKSTLVNRMVGAKVSIVTQKVQTTRFPVRGVAIEGDTQIVLVDTPG 84 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV--------------NIHDLLKE 125 IF+ + + M+R +W+ + A+ +VD EL ++ +++ Sbjct: 85 IFSPRRRLDRAMVRAAWAGSEEAEATVHLVDVQAELASRADKATPGEYRSAQDVQTIIEG 144 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + ++IL LNKID +K + LL A+ FM+SA+ G G +D+ L S Sbjct: 145 LKAADRKVILALNKIDGIKRDTLLAVAKDFFDTGVYSDVFMISASTGAGVEDLTAKLVSM 204 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 +P PW+Y DQ +DLP AEITREK++L +H+E+PY++ V T +EE+KDGS+ I Sbjct: 205 MPEGPWLYPEDQTADLPARLLAAEITREKVYLRVHEELPYAATVETTAFEERKDGSVRIE 264 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 Q I VER Q+ I++GK GQ +K I +++E+ +IL++ VHL L VKV+++W + Sbjct: 265 QTILVEREGQRVIVIGKGGQTLKWIGQASREELCDILDRKVHLFLHVKVKENWAEE 320 >gi|58584268|ref|YP_197841.1| GTP-binding protein Era [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418584|gb|AAW70599.1| GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 294 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 125/281 (44%), Positives = 185/281 (65%), Gaps = 3/281 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKSTL+N G K++IVT KVQTTR+ +RGI E+QI+F D+PGIF+A+ Sbjct: 9 VTIAGLPNAGKSTLINSITGKKIAIVTPKVQTTRTQIRGIAIYNETQIIFTDSPGIFSAE 68 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK--VNIHDLLKEIAKRSSRLILILNKIDC 142 K +++ +WS IK D++ L++D+ LK I + + ++ I ++NKID Sbjct: 69 TKLEKALVKSAWSAIKGDDVILLLIDASSYLKNIERIKTIFTRLRHTKTKCIFVINKIDL 128 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 VK L + + L ++K F +SA K G D+++YL P++PW Y DQ++D Sbjct: 129 VKKPELKMTYKHLDLLYKLKKIFTISALKSDGLSDLMDYLSEVAPVSPWFYGEDQVTDSS 188 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 +AEITREKLFL+L +E+PYS+ V+TE++EEKKD S++I+QVI+V + S KKI+LGK Sbjct: 189 TSFLSAEITREKLFLNLREELPYSTAVITEQFEEKKDESLVIKQVIFVLKDSHKKIVLGK 248 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G NIK I +EA+ E+ ++ E+ VHL LFVKV + W P+ Sbjct: 249 GGSNIKKIGIEARIELEKLFERKVHLFLFVKV-RPWTDRPE 288 >gi|296115042|ref|ZP_06833684.1| GTP-binding protein Era [Gluconacetobacter hansenii ATCC 23769] gi|295978379|gb|EFG85115.1| GTP-binding protein Era [Gluconacetobacter hansenii ATCC 23769] Length = 302 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 183/288 (63%), Gaps = 3/288 (1%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 EH+D +R G VA+VGA NAGKSTL+NR G K+SIV+ K QTTR V GI+ + Sbjct: 3 EHEDM---TTRCGFVAIVGAPNAGKSTLLNRMAGTKLSIVSPKAQTTRFRVLGILMRNHA 59 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 Q++ +DTPGIF + + M+ +W+ + ADI L++D+ L + +++ ++A+R+ Sbjct: 60 QMLLVDTPGIFRPRRMLDRAMVAAAWTGAEDADITLLIIDARAGLTEAVREIVSQLAQRN 119 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 R+ L+LNK D ++ + LL + L+ +E FM+SA G G DD+++ + + LP+ P Sbjct: 120 RRVWLVLNKTDLMRRDALLPLTAELSGLLTVEHVFMISARSGQGVDDLMDRMAAELPVGP 179 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 ++Y D ++DLP AE+ RE++FL H+E+PY++ TE ++E+ DGS+ I IYV Sbjct: 180 YLYPEDDLTDLPDRLLAAELVREQIFLQTHEEVPYAATAETESFQERPDGSVRIEVTIYV 239 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R S K I++G+ G I+ I A+KE++ +LE+P HL L VK + W Sbjct: 240 ARASHKAILIGEGGSRIRNIGERARKELSRLLERPCHLFLNVKERSGW 287 >gi|57239269|ref|YP_180405.1| GTP-binding protein Era [Ehrlichia ruminantium str. Welgevonden] gi|58579232|ref|YP_197444.1| GTP-binding protein Era [Ehrlichia ruminantium str. Welgevonden] gi|81819234|sp|Q5HAY9|ERA_EHRRW RecName: Full=GTPase Era gi|57161348|emb|CAH58271.1| putative GTP-binding protein ERA [Ehrlichia ruminantium str. Welgevonden] gi|58417858|emb|CAI27062.1| GTP-binding protein Era homolog [Ehrlichia ruminantium str. Welgevonden] Length = 296 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 131/285 (45%), Positives = 182/285 (63%), Gaps = 1/285 (0%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VGATNAGKSTLVN VG KV+ VT KVQTTR + + + + Q++F+DTPGIF+ K Sbjct: 12 AIVGATNAGKSTLVNVLVGQKVAAVTPKVQTTRVRMHAVSNHENVQLIFIDTPGIFSPKT 71 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 K +++ +W ++K + V ++VD L ++ ++ I + IL+LNKID V Sbjct: 72 KLEKFLVKHAWMSLKGIENVIVLVDVKNYLNQHLKKIIDRIKHSNLNAILVLNKIDIVHQ 131 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 + E E L K F +SA G G D +++YLC T P PW+Y+ DQISD P+ Sbjct: 132 SIVSEVIEYMYSLYKFSKAFTISALYGIGIDKLVDYLCETSPYGPWLYNDDQISDAPLKF 191 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 F AEITREKLF+ L E+PYS VVTE EEK+D S++I+QVIYV + S K I+LGK G+ Sbjct: 192 FMAEITREKLFITLRHELPYSLSVVTELVEEKEDNSLIIKQVIYVTKGSHKTIILGKKGE 251 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQKDW-GHDPKCCPQRE 309 +K IS+E+K ++ IL+ VHL LFVKV++ W H +C E Sbjct: 252 MVKKISMESKSDLENILQVKVHLFLFVKVREFWQNHLNECVGYAE 296 >gi|190571107|ref|YP_001975465.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019630|ref|ZP_03335436.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357379|emb|CAQ54813.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995052|gb|EEB55694.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 294 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 127/281 (45%), Positives = 183/281 (65%), Gaps = 3/281 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKSTL+N VG K++IVT KVQTTR+ VRG+ +QIVF D+PG+F+A+ Sbjct: 9 VTIAGLPNAGKSTLINSIVGKKIAIVTPKVQTTRTQVRGVAICNNAQIVFTDSPGVFSAE 68 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK--VNIHDLLKEIAKRSSRLILILNKIDC 142 + K +++ +W +K +DI L+VD + LK I + + + R IL++NK D Sbjct: 69 TNLEKALVKSAWGAVKDSDITLLLVDVNNYLKNIERIKTIFARLERTKGRCILVINKTDL 128 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 VK L E N L EK F +SA K G D+ +YL P+ PW Y DQI+D Sbjct: 129 VKKSELKMAHEHLNLLYKFEKIFTISALKNDGLSDLTSYLSEIAPIGPWFYEKDQITDSS 188 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 +AEITREKLFL+L +E+PYS+ V+TE++EEKKD S++I+Q+I+V + + KKI+LGK Sbjct: 189 ADFLSAEITREKLFLNLREELPYSTAVITEQFEEKKDKSLVIKQIIFVLKDNHKKIVLGK 248 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G +IK I++EA+ E+ ++ E VHL LFVKV + W P+ Sbjct: 249 DGSSIKKINIEARTELEKLFECKVHLFLFVKV-RPWTDRPE 288 >gi|94497605|ref|ZP_01304174.1| GTP-binding protein Era [Sphingomonas sp. SKA58] gi|94423022|gb|EAT08054.1| GTP-binding protein Era [Sphingomonas sp. SKA58] Length = 302 Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 123/288 (42%), Positives = 178/288 (61%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D +++ R G VA+VGA NAGKSTLVN VG KV+I + K QTTR+ V G+ E ++QIV Sbjct: 2 DVSEESQRCGVVAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQIV 61 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DTPGIF K + M++ +W + AD++ LVVD L + +++ + RS R Sbjct: 62 LVDTPGIFAPKRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGPKMEPIVEALVHRSERK 121 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L+LNK+D E+LL + + V E+TF +SA G G + +P PW + Sbjct: 122 WLVLNKVDIAIKEKLLVHTQKLYERVGFEETFFISAQTGDGLAQLKTAFADAMPQGPWHF 181 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 DQ+SD AEITRE+L+ LH E+PY++ V TE+++E++DGS+ I Q I V RP Sbjct: 182 PEDQVSDATDRMLAAEITREQLYHQLHAELPYAAAVDTEQYKEREDGSVEIHQQILVARP 241 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +Q+ I+LGK GQ +K I +A+ E+A +L VHL L VKV++DW D Sbjct: 242 TQRAIVLGKGGQRLKEIGSKARAELATLLGVKVHLYLHVKVKEDWEDD 289 >gi|83858197|ref|ZP_00951719.1| GTP-binding protein Era [Oceanicaulis alexandrii HTCC2633] gi|83853020|gb|EAP90872.1| GTP-binding protein Era [Oceanicaulis alexandrii HTCC2633] Length = 307 Score = 245 bits (625), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 121/291 (41%), Positives = 182/291 (62%), Gaps = 6/291 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q+ +R+G VA++GA NAGKSTLVN VG KVSIVT KVQTTR VRG++ +Q+V +D Sbjct: 4 QNATRAGFVAIIGAPNAGKSTLVNALVGRKVSIVTPKVQTTRFQVRGVMMHGSAQLVLVD 63 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV------NIHDLLKEIAKRS 130 TPG+F + + M+ +W AD + VVD+ +L ++ ++ + Sbjct: 64 TPGVFAPRRRLDRAMVASAWEGADDADAIVHVVDAAAQLSQARRTVEDVERVIDGLKAHE 123 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + +L+LNKID +K E LL+ ++ + FM+SA+ G D+ ++L + +P +P Sbjct: 124 LKAVLVLNKIDLIKREELLDLSQKLYETGVYSDVFMISASNGDRIKDLADFLVTLMPESP 183 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 ++Y DQI+DL AE+TREKL+L +H E+PY V T+ W++ KDGS+ I Q +YV Sbjct: 184 YLYPEDQIADLSERMLAAEVTREKLYLRVHDELPYGLTVETDSWKDNKDGSVRIEQTVYV 243 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ER K I+LGK GQ IK +S A+ ++ E L++ VHL LFVKV+ +WG + Sbjct: 244 EREGHKPIILGKGGQTIKWVSTAARTDLEEQLDRKVHLFLFVKVRPNWGDE 294 >gi|58617284|ref|YP_196483.1| GTP-binding protein Era [Ehrlichia ruminantium str. Gardel] gi|81311297|sp|Q5FFN4|ERA_EHRRG RecName: Full=GTPase Era gi|58416896|emb|CAI28009.1| GTP-binding protein Era homolog [Ehrlichia ruminantium str. Gardel] Length = 296 Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 130/285 (45%), Positives = 181/285 (63%), Gaps = 1/285 (0%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG TNAGKSTLVN VG KV+ VT KVQTTR + + + + Q++F+DTPGIF+ K Sbjct: 12 AIVGTTNAGKSTLVNVLVGQKVAAVTPKVQTTRVRMHAVSNHENVQLIFIDTPGIFSPKT 71 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 K +++ +W ++K + V ++VD L ++ ++ I + IL+LNKID V Sbjct: 72 KLEKFLVKHAWMSLKGIENVIVLVDVKNYLNQHLKKIIDRIKHSNLNAILVLNKIDIVHQ 131 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 + E E L K F +SA G G D +++YLC T P PW+Y+ DQISD P+ Sbjct: 132 SIVSEVIEYMYSLYKFSKAFTISALYGIGIDKLVDYLCETSPYGPWLYNDDQISDAPLKF 191 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 F AEITREKLF+ L E+PYS VVTE EEK+D S++I+QVIYV + S K I+LGK G+ Sbjct: 192 FMAEITREKLFITLRHELPYSLSVVTELVEEKEDNSLIIKQVIYVTKDSHKTIILGKKGE 251 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQKDW-GHDPKCCPQRE 309 +K IS+E+K ++ IL+ VHL LFVKV++ W H +C E Sbjct: 252 MVKKISMESKSDLENILQVKVHLFLFVKVREFWQNHLNECVGYAE 296 >gi|91205994|ref|YP_538349.1| GTP-binding protein Era [Rickettsia bellii RML369-C] gi|122425285|sp|Q1RHA4|ERA_RICBR RecName: Full=GTPase Era gi|91069538|gb|ABE05260.1| GTP-binding protein Era [Rickettsia bellii RML369-C] Length = 295 Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 126/284 (44%), Positives = 178/284 (62%), Gaps = 13/284 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ ++QI+ DTPGI Sbjct: 7 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLNDTQIILYDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F K + K M+R +WS++ ADIV L++DS + L HD+L ++ + + +LNKI Sbjct: 67 FEPKGTLEKAMVRCAWSSLHSADIVMLIIDSLKPLDSITHDILNKLRSLNVVPVFLLNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D +E I + F+ + F +SA G D +L Y+ S +APW+Y Sbjct: 127 D-------VESKYIDDTKAFLAENYSDSLLFPISAISGENVDKLLEYITSKAKIAPWLYE 179 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+DLPM AEITRE+LFL L +E+PY V TEKWEE KD S+ I Q+I V R S Sbjct: 180 EDDITDLPMRFIAAEITREQLFLGLQQELPYKLTVQTEKWEELKDKSVKINQIIVVSRES 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I+LGKNG IK + +++ ++ + PVHL LFVKVQ+ W Sbjct: 240 YKTIILGKNGSKIKELGAKSRMQMQQFFGFPVHLFLFVKVQELW 283 >gi|88658308|ref|YP_507292.1| GTP-binding protein Era [Ehrlichia chaffeensis str. Arkansas] gi|123493487|sp|Q2GGZ1|ERA_EHRCR RecName: Full=GTPase Era gi|88599765|gb|ABD45234.1| GTP-binding protein Era [Ehrlichia chaffeensis str. Arkansas] Length = 296 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/281 (44%), Positives = 183/281 (65%), Gaps = 1/281 (0%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG TNAGKSTL+N VG KV+ VT KVQTTR + +++ + Q++F+DTPGIF+ K Sbjct: 12 AIVGTTNAGKSTLINMLVGQKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKT 71 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 K +++ +W ++K + V L++D L +I ++ I + + IL++NKID V Sbjct: 72 KLEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIEKIISRIKQSNINAILVVNKIDTVPT 131 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 + + E L KTF +SA G +++YLC P PW+Y DQISD P+ Sbjct: 132 SSVDKAIEHMYSLHSFSKTFTISALHDIGLSRLVDYLCEISPNGPWLYPEDQISDAPLKF 191 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 F AEITREKLFL LH E+PYS VVTE EEK+DGS++++QVIYV + S + I+LGK G+ Sbjct: 192 FMAEITREKLFLSLHHELPYSLSVVTEALEEKEDGSLVVKQVIYVTKDSHRTIILGKKGE 251 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQKDW-GHDPKCC 305 IK IS+E++ ++A+IL+ +HL LFVKV++ W H +C Sbjct: 252 MIKKISMESRSDLAKILDLKIHLFLFVKVREFWQNHLDECV 292 >gi|68171944|ref|ZP_00545257.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia chaffeensis str. Sapulpa] gi|67998634|gb|EAM85374.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia chaffeensis str. Sapulpa] Length = 296 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/281 (44%), Positives = 183/281 (65%), Gaps = 1/281 (0%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG TNAGKSTL+N VG KV+ VT KVQTTR + +++ + Q++F+DTPGIF+ K Sbjct: 12 AIVGTTNAGKSTLINMLVGQKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKT 71 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 K +++ +W ++K + V L++D L +I ++ I + + IL++NKID V Sbjct: 72 KLEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIERIISRIKQSNINAILVVNKIDTVPT 131 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 + + E L KTF +SA G +++YLC P PW+Y DQISD P+ Sbjct: 132 SSVDKAIEHMYSLHSFSKTFTISALHDIGLSRLVDYLCEISPNGPWLYPEDQISDAPLKF 191 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 F AEITREKLFL LH E+PYS VVTE EEK+DGS++++QVIYV + S + I+LGK G+ Sbjct: 192 FMAEITREKLFLSLHHELPYSLSVVTEALEEKEDGSLVVKQVIYVTKDSHRTIILGKKGE 251 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQKDW-GHDPKCC 305 IK IS+E++ ++A+IL+ +HL LFVKV++ W H +C Sbjct: 252 MIKKISMESRSDLAKILDLKIHLFLFVKVREFWQNHLDECV 292 >gi|157964182|ref|YP_001499006.1| GTP-binding protein Era [Rickettsia massiliae MTU5] gi|157843958|gb|ABV84459.1| GTP-binding protein Era [Rickettsia massiliae MTU5] Length = 347 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 126/289 (43%), Positives = 182/289 (62%), Gaps = 13/289 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTP Sbjct: 57 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 116 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K S K M+R +WS++ AD+V L++DS + H++L ++ + I +LN Sbjct: 117 GIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLN 176 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWV 192 KID +E + + F+ + F +SA G D +L Y+ S ++PW+ Sbjct: 177 KID-------IESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWL 229 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y+ D I+DLPM AEITRE+LFL+L KE+PY V TEKWEE KD S+ I QVI V R Sbjct: 230 YAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEELKDKSVKINQVIVVSR 289 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K I+LGKNG IK I +++ ++ PVHL LFVKV++ W ++ Sbjct: 290 ESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENN 338 >gi|332187780|ref|ZP_08389514.1| GTP-binding protein Era [Sphingomonas sp. S17] gi|332012130|gb|EGI54201.1| GTP-binding protein Era [Sphingomonas sp. S17] Length = 298 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 128/281 (45%), Positives = 176/281 (62%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VGA NAGKSTLVN VG KV+IV+ K QTTR+ + G+ E E+QI+ +DTPGI Sbjct: 5 RCGLVAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRAKLLGVAIEGEAQILLVDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F K + M+ +W + ADI+ LVVD + + + + IA R LILNK+ Sbjct: 65 FEPKRRLDRAMVAAAWEGAEGADILALVVDGKGGIGPKVTAIAESIAHRPEPKHLILNKV 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D RLL AE N++V ++T+ VSA G G ++ L +P PW Y DQ+SD Sbjct: 125 DIADKARLLGHAEKLNQVVPFDETWFVSAQTGDGLPELKTRLAGLMPQGPWHYPEDQVSD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AE+TRE+++L LH E+PY+S V TE ++E++DGS+ I Q I VERP+Q+ I+L Sbjct: 185 ATERALAAEVTREQIYLQLHAELPYASAVETEAYKEREDGSVEIHQQILVERPTQRAIVL 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 GKNG IK I A+ +++E+L Q VHL L VKV+ W D Sbjct: 245 GKNGVRIKEIGARARAQLSELLGQKVHLYLHVKVKPGWDED 285 >gi|114799800|ref|YP_759605.1| GTP-binding protein Era [Hyphomonas neptunium ATCC 15444] gi|114739974|gb|ABI78099.1| GTP-binding protein Era [Hyphomonas neptunium ATCC 15444] Length = 315 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 128/292 (43%), Positives = 177/292 (60%), Gaps = 14/292 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G A++GA NAGKSTL NR VGAKV+IVTHKVQTTR VRG+ ++QIV +DTPGI Sbjct: 8 RAGFCAVIGAPNAGKSTLTNRLVGAKVAIVTHKVQTTRFPVRGVAQVGDAQIVIVDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH--------RELKVNIHDL------LKEI 126 F AK + M++ +W AD V +VD+ R H L ++++ Sbjct: 68 FAAKRRLDRAMVKAAWGGADEADCVVHLVDASAWVAEQTGRPSGAQRHSLEDDRRVIEQL 127 Query: 127 AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + R+ L LNKID +++L ++ E+TF++SA G G D + + + + Sbjct: 128 KEAGKRVFLALNKIDLFPHDQVLPVIAALSEAGVYEETFLISAENGEGVDRLEAAIAARM 187 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQ 246 P P +Y DQI+DLPM AE+TREKL L LH+E+PY V TE WEE+ DGS+ I+Q Sbjct: 188 PEGPALYPPDQIADLPMRLLAAEVTREKLMLRLHQELPYQLMVDTESWEERGDGSVRIQQ 247 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VI V R K ++LGK G IK I A+ ++ ++LE+PVHL LFVKV + W Sbjct: 248 VIIVGRDGHKAMVLGKGGSLIKEIGRLARLDLTQMLERPVHLFLFVKVDERW 299 >gi|157826642|ref|YP_001495706.1| GTP-binding protein Era [Rickettsia bellii OSU 85-389] gi|189037663|sp|A8GUZ8|ERA_RICB8 RecName: Full=GTPase Era gi|157801946|gb|ABV78669.1| GTP-binding protein Era [Rickettsia bellii OSU 85-389] Length = 295 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 125/284 (44%), Positives = 178/284 (62%), Gaps = 13/284 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ ++QI+ DTPGI Sbjct: 7 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLNDTQIILYDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F K + K M+R +WS++ ADIV L++DS + L HD+L ++ + + +LNKI Sbjct: 67 FEPKGTLEKAMVRCAWSSLHSADIVMLIIDSLKPLDSITHDILNKLRSLNVVPVFLLNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D +E I + F+ + F +SA G D +L Y+ S +APW+Y Sbjct: 127 D-------VESKYIDDTKAFLAENYSDSLLFPISAISGENVDKLLEYITSKAKIAPWLYE 179 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+DLPM AEITRE+LFL L +E+PY V TEKWEE KD S+ I Q+I V R S Sbjct: 180 EDDITDLPMRFIAAEITREQLFLGLQQELPYKLTVQTEKWEELKDKSVKINQIIVVSRES 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I+LGKNG IK + +++ ++ + PVHL LFVKV++ W Sbjct: 240 YKTIILGKNGSKIKELGAKSRMQMQQFFGFPVHLFLFVKVRELW 283 >gi|56552280|ref|YP_163119.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ZM4] gi|56543854|gb|AAV90008.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ZM4] Length = 306 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 122/285 (42%), Positives = 179/285 (62%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ G VA+VGA NAGKSTLVN VG K++I++ K QTTR+ + GI + ++QI+ +D Sbjct: 9 ENTQHCGLVAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLVD 68 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGIF K + + M+ +W + + A++V LVVD+ L I L++ +A R ++I Sbjct: 69 TPGIFTPKKRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKEPKVII 128 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNK+D LL A+ + + E FMVSAT G G D+ + L +P +PW + D Sbjct: 129 LNKVDITPKAELLALAQKLYEAIKPEALFMVSATTGDGVADLKHSLADMMPESPWHFPED 188 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q+SD+ AEITRE++FL LH E+PY++ V TEK+EE+KDGS+ I Q I + R SQK Sbjct: 189 QVSDVTDRMLAAEITREQIFLQLHDELPYAAAVETEKYEERKDGSVAIHQQILIARDSQK 248 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++G +G +K I +A+ E+++IL VHL L VKV W D Sbjct: 249 AIVVGHHGARLKEIGSKARAELSQILGCKVHLFLHVKVSPRWDED 293 >gi|329114469|ref|ZP_08243231.1| GTP-binding protein Era-like protein [Acetobacter pomorum DM001] gi|326696545|gb|EGE48224.1| GTP-binding protein Era-like protein [Acetobacter pomorum DM001] Length = 300 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 121/285 (42%), Positives = 177/285 (62%), Gaps = 2/285 (0%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 D +R G ALVGA NAGKSTL+NR GAK+SIV+ K QTTR V GI+ SQI+ Sbjct: 1 MADDTTRCGFAALVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGHSQILL 60 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DTPGIF + + M+ +W+ + ADI L+VD+ L + +++ +A+ ++ Sbjct: 61 VDTPGIFRPRRKLDRAMVAAAWTGAEDADITLLLVDARSGLTEAVQTIIERLAETKRKVW 120 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L+LNK D V LL A I KL +E FMVSA G+G +D+L+ L ++LP P++Y Sbjct: 121 LVLNKTDLVPATALLPLTASITEKLP-VEHVFMVSARTGNGVEDLLDKLAASLPEGPYLY 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D ++DLP AE+ RE++F+ H+E+PYS+ V TE ++E+ DGS+ I IYV R Sbjct: 180 PEDDLTDLPDRLLAAELVREQIFMQTHEEVPYSATVETESYKERPDGSVRIDATIYVSRA 239 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G GQ I+ I A+K+++ +LE+P HL L VK + W Sbjct: 240 GHKAILIGNGGQKIRQIGERARKQLSSLLERPCHLFLNVKERGGW 284 >gi|258541745|ref|YP_003187178.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01] gi|256632823|dbj|BAH98798.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01] gi|256635880|dbj|BAI01849.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-03] gi|256638935|dbj|BAI04897.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-07] gi|256641989|dbj|BAI07944.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-22] gi|256645044|dbj|BAI10992.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-26] gi|256648099|dbj|BAI14040.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-32] gi|256651152|dbj|BAI17086.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654143|dbj|BAI20070.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-12] Length = 300 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 121/285 (42%), Positives = 177/285 (62%), Gaps = 2/285 (0%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 D +R G ALVGA NAGKSTL+NR GAK+SIV+ K QTTR V GI+ SQI+ Sbjct: 1 MADDTTRCGFAALVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGHSQILL 60 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DTPGIF + + M+ +W+ + ADI L+VD+ L + +++ +A+ ++ Sbjct: 61 VDTPGIFRPRRKLDRAMVAAAWTGAEDADITLLLVDARSGLTEAVQTIIERLAETKRKVW 120 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L+LNK D V LL A I KL +E FMVSA G+G +D+L+ L ++LP P++Y Sbjct: 121 LVLNKTDLVPATALLPLTASITEKLP-VEHVFMVSARTGNGVEDLLDKLAASLPEGPYLY 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D ++DLP AE+ RE++F+ H+E+PYS+ V TE ++E+ DGS+ I IYV R Sbjct: 180 PEDDLTDLPDRLLAAELVREQIFMQTHEEVPYSATVETESYKERPDGSVRIDATIYVSRA 239 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G GQ I+ I A+K+++ +LE+P HL L VK + W Sbjct: 240 GHKAILIGNGGQKIRQIGERARKQLSSLLERPCHLFLNVKERGGW 284 >gi|241761662|ref|ZP_04759749.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373970|gb|EER63503.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 306 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 122/279 (43%), Positives = 176/279 (63%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VGA NAGKSTLVN VG K++I++ K QTTR+ + GI + ++QI+ +DTPGIF Sbjct: 15 GLVAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLVDTPGIFT 74 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K + + M+ +W + + A++V LVVD+ L I L++ +A R ++ILNK+D Sbjct: 75 PKKRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKEPKVIILNKVDI 134 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 LL A+ + + E FMVSAT G G D+ L +P +PW + DQ+SD+ Sbjct: 135 TPKAELLALAQKLYEAIKPEALFMVSATTGDGVADLKRSLADMMPESPWHFPEDQVSDVT 194 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 AEITRE++FL LH E+PY++ V TEK+EE+KDGS+ I Q I + R SQK I++G Sbjct: 195 DRMLAAEITREQIFLQLHDELPYAAAVETEKYEERKDGSVAIHQQILIARDSQKAIVVGH 254 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G +K I +A+ E+++IL VHL L VKV W D Sbjct: 255 HGARLKEIGSKARAELSQILGCKVHLFLHVKVSPRWDED 293 >gi|260754027|ref|YP_003226920.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553390|gb|ACV76336.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 306 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 122/279 (43%), Positives = 176/279 (63%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VGA NAGKSTLVN VG K++I++ K QTTR+ + GI + ++QI+ +DTPGIF Sbjct: 15 GLVAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLVDTPGIFT 74 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K + + M+ +W + + A++V LVVD+ L I L++ +A R ++ILNK+D Sbjct: 75 PKKRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKEPKVIILNKVDI 134 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 LL A+ + + E FMVSAT G G D+ L +P +PW + DQ+SD+ Sbjct: 135 TPKAELLALAQKLYEAIKPEALFMVSATTGDGVADLKRSLADMMPESPWHFPEDQVSDVT 194 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 AEITRE++FL LH E+PY++ V TEK+EE+KDGS+ I Q I + R SQK I++G Sbjct: 195 DRMLAAEITREQIFLQLHDELPYAAAVETEKYEERKDGSVAIHQQILIARDSQKAIVVGH 254 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G +K I +A+ E+++IL VHL L VKV W D Sbjct: 255 HGARLKEIGSKARAELSQILGCKVHLFLHVKVSPRWDED 293 >gi|238650708|ref|YP_002916561.1| GTP-binding protein Era [Rickettsia peacockii str. Rustic] gi|238624806|gb|ACR47512.1| GTP-binding protein Era [Rickettsia peacockii str. Rustic] Length = 339 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 126/289 (43%), Positives = 181/289 (62%), Gaps = 13/289 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++ V ++G N GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTP Sbjct: 49 NQKTVSVCIIGRPNNGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 108 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K S K M+R +WS++ AD+V L++DS R H++L ++ + I +LN Sbjct: 109 GIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLRSFDDITHNILDKLRSLNIVPIFLLN 168 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWV 192 KID +E + + F+ + F +SA G D +L Y+ S ++PW+ Sbjct: 169 KID-------IESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWL 221 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y+ D I+DLPM AEITRE+LFL+L KE+PY V TEKWE+ KD S+ I QVI V R Sbjct: 222 YAEDYITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSR 281 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K I+LGKNG IK I +++ ++ PVHL LFVKV++ W ++ Sbjct: 282 ESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENN 330 >gi|73667167|ref|YP_303183.1| GTP-binding protein Era [Ehrlichia canis str. Jake] gi|123614857|sp|Q3YRS0|ERA_EHRCJ RecName: Full=GTPase Era gi|72394308|gb|AAZ68585.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia canis str. Jake] Length = 296 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 127/285 (44%), Positives = 182/285 (63%), Gaps = 1/285 (0%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG TNAGKSTL+N VG KV+ VT KVQTTR + +++ + Q++F+DTPGIF+ K Sbjct: 12 AIVGTTNAGKSTLINMLVGRKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKT 71 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 K +++ +W ++K + V L++D L +I ++ I + + IL++NKID V Sbjct: 72 KLEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIEKIISRIKQSNINAILVVNKIDMVSQ 131 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 + + E L KTF +SA G + ++NYLC P PW+Y QISD P+ Sbjct: 132 ALVDKAIEYMYSLHNFSKTFTISALHDIGLNRLINYLCEISPSGPWLYPEGQISDAPLKF 191 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 F AEITREKLFL LH E+PYS VVTE EEK DGS++++QVIYV + + K I+LGK G+ Sbjct: 192 FIAEITREKLFLSLHHELPYSLSVVTEALEEKVDGSLIVKQVIYVTKDNHKTIILGKKGE 251 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQKDW-GHDPKCCPQRE 309 IK IS+E++ E+ +IL+ +HL LFVKV++ W H +C E Sbjct: 252 MIKKISIESRSELEKILDLKIHLFLFVKVRELWQDHLNECVGYVE 296 >gi|157828030|ref|YP_001494272.1| GTP-binding protein Era [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800511|gb|ABV75764.1| GTP-binding protein Era [Rickettsia rickettsii str. 'Sheila Smith'] Length = 339 Score = 241 bits (615), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 183/289 (63%), Gaps = 13/289 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTP Sbjct: 49 NQKTVSVCIIGQPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 108 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K S K+M+R +WS++ AD+V L++DS + H++L ++ + I +LN Sbjct: 109 GIFEPKGSLEKVMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIIPIFLLN 168 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM------VSATKGHGCDDVLNYLCSTLPLAPWV 192 KID +E + + F+ + + +SA G D +L Y+ S ++PW+ Sbjct: 169 KID-------IESKYLNDIKAFLTENYPDSLLLPISALSGKNIDGLLEYITSKAKISPWL 221 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y+ D I+DLPM AEITRE+LFL+L KE+PY V TEKWE+ KD S+ I QVI V R Sbjct: 222 YAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSR 281 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K I+LGKNG IK I +++ ++ PVHL LFVKV++ W ++ Sbjct: 282 ESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENN 330 >gi|148553135|ref|YP_001260717.1| GTP-binding protein Era [Sphingomonas wittichii RW1] gi|148498325|gb|ABQ66579.1| GTP-binding protein Era [Sphingomonas wittichii RW1] Length = 297 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 122/283 (43%), Positives = 172/283 (60%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 R G VA+VGA NAGKSTLVN VG KV+IV+ K QTTR+ + G+ ESQI+ +DTP Sbjct: 2 TERCGFVAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRTRLIGVAIAGESQILLVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF + + M+ +W + AD++ V+D+ + I +LL +A+R +++LN Sbjct: 62 GIFAPRRRLDRAMVAAAWGGAQDADLIAFVIDAKTGITHRIGELLDTLAQRREPKLVVLN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D E LLE A + + E FMVSA G G D+ L +P PW + +Q+ Sbjct: 122 KVDICSKESLLELAVRLQEKLAPEAIFMVSAATGDGVADLRQTLADRVPEGPWHFPEEQV 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD AE+TRE+L+L LH E+PY S + TEK+EE++DGS+ I Q I V R +Q+ I Sbjct: 182 SDATDRMLAAEVTREQLYLQLHAELPYDSAIETEKYEERRDGSVAIHQQILVARDTQRAI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +LGK G +K I A+ E+ +LE+ VHL L VKV + WG D Sbjct: 242 VLGKRGVRLKEIGSRARAELETLLERKVHLFLHVKVAEKWGED 284 >gi|34580888|ref|ZP_00142368.1| GTP-binding protein Era [Rickettsia sibirica 246] gi|28262273|gb|EAA25777.1| GTP-binding protein Era [Rickettsia sibirica 246] Length = 339 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 182/289 (62%), Gaps = 13/289 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTP Sbjct: 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 108 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K S K M+R +WS++ AD+V L++DS + H+++ ++ + I +LN Sbjct: 109 GIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLN 168 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWV 192 KID +E + + F+ + F +SA G D +L Y+ S ++PW+ Sbjct: 169 KID-------IESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWL 221 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y+ D I+DLPM AEITRE+LFL+L KE+PY V TEKWE+ KD S+ I QVI V R Sbjct: 222 YAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSR 281 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K I+LGKNG IK I +++ ++ PVHL LFVKV++ W ++ Sbjct: 282 ESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVREMWENN 330 >gi|165932728|ref|YP_001649517.1| GTPase Era [Rickettsia rickettsii str. Iowa] gi|165907815|gb|ABY72111.1| GTP-binding protein [Rickettsia rickettsii str. Iowa] Length = 339 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 182/289 (62%), Gaps = 13/289 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTP Sbjct: 49 NQKTVSVCIIGQPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 108 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K S K M+R +WS++ AD+V L++DS + H++L ++ + I +LN Sbjct: 109 GIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIIPIFLLN 168 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM------VSATKGHGCDDVLNYLCSTLPLAPWV 192 KID +E + + F+ + + +SA G D +L Y+ S ++PW+ Sbjct: 169 KID-------IESKYLNDIKAFLTENYPDSLLLPISALSGKNIDGLLEYITSKAKISPWL 221 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y+ D I+DLPM AEITRE+LFL+L KE+PY V TEKWE+ KD S+ I QVI V R Sbjct: 222 YAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSR 281 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K I+LGKNG IK I +++ ++ PVHL LFVKV++ W ++ Sbjct: 282 ESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENN 330 >gi|229586356|ref|YP_002844857.1| GTP-binding protein Era [Rickettsia africae ESF-5] gi|228021406|gb|ACP53114.1| GTP-binding protein Era [Rickettsia africae ESF-5] Length = 339 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 182/289 (62%), Gaps = 13/289 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTP Sbjct: 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 108 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K S K M+R +WS++ AD+V L++DS + H+++ ++ + I +LN Sbjct: 109 GIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLN 168 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWV 192 KID +E + + F+ + F +SA G D +L Y+ S ++PW+ Sbjct: 169 KID-------IESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWL 221 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y+ D I+DLPM AEITRE+LFL+L KE+PY V TEKWE+ KD S+ I QVI V R Sbjct: 222 YAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSR 281 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K I+LGKNG IK I +++ ++ PVHL LFVKV++ W ++ Sbjct: 282 ESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENN 330 >gi|15892081|ref|NP_359795.1| GTP-binding protein Era [Rickettsia conorii str. Malish 7] gi|21263592|sp|Q92JA9|ERA_RICCN RecName: Full=GTPase Era gi|15619203|gb|AAL02696.1| GTP-binding protein Era [Rickettsia conorii str. Malish 7] Length = 339 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 182/289 (62%), Gaps = 13/289 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTP Sbjct: 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 108 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K S K M+R +WS++ AD+V L++DS + H+++ ++ + I +LN Sbjct: 109 GIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLN 168 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWV 192 KID +E + + F+ + F +SA G D +L Y+ S ++PW+ Sbjct: 169 KID-------IESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWL 221 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y+ D I+DLPM AEITRE+LFL+L KE+PY V TEKWE+ KD S+ I QVI V R Sbjct: 222 YAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSR 281 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K I+LGKNG IK I +++ ++ PVHL LFVKV++ W ++ Sbjct: 282 ESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENN 330 >gi|157803303|ref|YP_001491852.1| GTP-binding protein Era [Rickettsia canadensis str. McKiel] gi|189037664|sp|A8EXI4|ERA_RICCK RecName: Full=GTPase Era gi|157784566|gb|ABV73067.1| GTP-binding protein Era [Rickettsia canadensis str. McKiel] Length = 295 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 122/287 (42%), Positives = 182/287 (63%), Gaps = 13/287 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTPGI Sbjct: 7 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F K + K M+R +WS++ AD+V L++DS + H++L ++ + + +LNKI Sbjct: 67 FEPKGTLEKAMVRCAWSSLHSADLVMLIIDSLKPFDDVTHNILDKLCSLNIVPVFLLNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 + +E + N F+ + F +SA G D +L Y+ S +APW+Y+ Sbjct: 127 E-------IESKYLNNLKAFLTENHPDSLLFPISALSGKNIDRLLEYITSKAKIAPWLYA 179 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+DLPM AEITRE+LFL+L +E+PY V TEKWEE KD S+ I QVI V R S Sbjct: 180 EDDITDLPMRFIAAEITREQLFLNLQQELPYKLTVQTEKWEELKDKSVKINQVIVVARES 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I+LGKNG IK I +++ ++ + P+HL LFVKV++ W ++ Sbjct: 240 YKTIILGKNGSKIKEIGAKSRMQMEQFFSCPIHLFLFVKVRELWENN 286 >gi|307292854|ref|ZP_07572700.1| GTP-binding protein Era [Sphingobium chlorophenolicum L-1] gi|306880920|gb|EFN12136.1| GTP-binding protein Era [Sphingobium chlorophenolicum L-1] Length = 302 Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 121/284 (42%), Positives = 173/284 (60%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 ++ R G +A+VGA NAGKSTLVN VG KV+I + K QTTR+ V G+ E ++Q+V +DT Sbjct: 6 ESQRCGVIAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMVLVDT 65 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGIF K + M++ +W + AD++ LVVD L + ++ +A R + LIL Sbjct: 66 PGIFAPKRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVSALAARPEKKWLIL 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D E+LL + + + I +TF VSA G G ++ +P PW + DQ Sbjct: 126 NKVDIAIKEKLLVHTQRLYEQLDIAETFFVSAATGDGLPELKTAFARAMPEGPWHFPEDQ 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +SD AEITRE+L+ LH E+PY++ V TEK+ E+ DGS+ I Q I V R SQ+ Sbjct: 186 VSDATDRMLAAEITREQLYHQLHAELPYAAAVDTEKYSERDDGSVEIHQQILVGRSSQRA 245 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I+LGK GQ +K I +A+ E+A +L VHL L VKV++DW D Sbjct: 246 IVLGKGGQRLKEIGSKARAELASLLGVRVHLYLHVKVKEDWEDD 289 >gi|296535949|ref|ZP_06898098.1| GTP-binding protein Era [Roseomonas cervicalis ATCC 49957] gi|296263722|gb|EFH10198.1| GTP-binding protein Era [Roseomonas cervicalis ATCC 49957] Length = 319 Score = 238 bits (607), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 115/287 (40%), Positives = 175/287 (60%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 +D +R G VA+VGA NAGKSTLVNR GAKVSIV+ K QTTR +R +V ++ +Q Sbjct: 17 EQDAALGPTRCGLVAVVGAPNAGKSTLVNRLAGAKVSIVSPKPQTTRFRIRAVVMQERTQ 76 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 IV DTPGIF+ + + M+ +W + AD+ L+VDS + + ++ + + Sbjct: 77 IVLTDTPGIFSPRRRLDRAMVAAAWEGAQDADLALLIVDSRAGMTEAVESIISVLKRSRV 136 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + L+LNK D + ++LL N+ + E+TFM+SA KG G D ++ L LP PW Sbjct: 137 PIWLVLNKSDLIDTKKLLPLTASLNEQLSFEETFMISAEKGDGLDRMMAALGRRLPEGPW 196 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 ++ D++SDLP AEI RE++ H+E+P+ + V TE+W+E++DGS+ I IYV Sbjct: 197 LFPEDELSDLPDRMLAAEIVREQILRQTHQEVPHHTTVETEQWQERRDGSVRIDCTIYVG 256 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R +QK I++G G ++ I A+ E+ +LE+ VHL L VK ++ W Sbjct: 257 RATQKAILIGDGGAKVRAIGQRARMELENLLERRVHLFLNVKERQGW 303 >gi|162147936|ref|YP_001602397.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5] gi|161786513|emb|CAP56095.1| putative GTP-binding protein era homolog [Gluconacetobacter diazotrophicus PAl 5] Length = 305 Score = 238 bits (607), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 117/284 (41%), Positives = 179/284 (63%), Gaps = 1/284 (0%) Query: 16 VQD-NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 +QD +R G VA+VGA NAGKSTL+NR GAK+SIV+ K QTTR V GI+ ESQI+ Sbjct: 6 IQDMTTRCGFVAIVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGESQILL 65 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DTPGIF + + M+ +W+ + ADI L+VD+ R L ++ +++ +A+ R+ Sbjct: 66 VDTPGIFQPRRKLDRAMVAAAWTGAEDADITLLLVDARRGLSESVRAIVERLAQSRRRVW 125 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 L+LNK D V + LL + L+ +E +MVSA G G +D+L+ L ++LP P++Y Sbjct: 126 LVLNKTDLVDRQALLPLTAELSALLDVEHVYMVSARSGDGVEDLLSALAASLPEGPYLYP 185 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++DLP AE+ RE++FL H+E+PY++ TE + E DGS+ I IYV R Sbjct: 186 EDDLTDLPDRLLAAELVREQIFLQTHEEVPYAATAETESFRELPDGSVRIEVTIYVARAG 245 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G+ G I++I A+K+++ +L++ HL L VK + W Sbjct: 246 HKAILIGEKGSRIRSIGERARKDLSRLLDRTCHLFLNVKERAGW 289 >gi|254293935|ref|YP_003059958.1| GTP-binding protein Era [Hirschia baltica ATCC 49814] gi|254042466|gb|ACT59261.1| GTP-binding protein Era [Hirschia baltica ATCC 49814] Length = 331 Score = 238 bits (607), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 126/294 (42%), Positives = 183/294 (62%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G VA++G+ NAGKSTLVNR VGAKVSIVTHKVQTTR VRG++ ++Q+V +DTPG Sbjct: 23 TRAGFVAVIGSPNAGKSTLVNRLVGAKVSIVTHKVQTTRFQVRGVMMRGDAQVVLVDTPG 82 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHR-ELKVNIHD---------LLKE 125 IF K + M++ +W + AD + +VD SH+ + KV D ++ + Sbjct: 83 IFAPKHRLDRAMVKSAWDGAEGADQIIHLVDASSRSHKIDDKVTGADKKTIIDDQRIIDD 142 Query: 126 IAKRSSRLILILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + + IL LNKID E L+ E+ N+ V+ + FM+S +G G + +++ Sbjct: 143 LKASGRKAILALNKIDLFDREDLIPISKELFNEGVYSD-VFMISGLRGGGVRQLADHIAG 201 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI 244 +P+ P+++ DQ +D+P AE+TREKL L LH+E+PY V TE WE KDGSI + Sbjct: 202 NMPVGPFLFPEDQAADMPSRLLAAEVTREKLMLRLHEELPYQMTVETENWERFKDGSIRV 261 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 Q+IYV R +KI+LGK G+ IK I +A+K++ EI E P+HL VKV + W Sbjct: 262 DQIIYVAREGHRKIVLGKGGRAIKDIGQQARKDLQEIFETPIHLFTRVKVSEKW 315 >gi|157825293|ref|YP_001493013.1| GTP-binding protein Era [Rickettsia akari str. Hartford] gi|189037662|sp|A8GM80|ERA_RICAH RecName: Full=GTPase Era gi|157799251|gb|ABV74505.1| GTP-binding protein Era [Rickettsia akari str. Hartford] Length = 293 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 124/290 (42%), Positives = 178/290 (61%), Gaps = 13/290 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R+ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTP Sbjct: 3 NQRTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K S K M+R +WS++ AD+V L++DS + HD+L ++ + I +LN Sbjct: 63 GIFEPKGSLEKAMVRCAWSSLHSADLVMLIIDSLKPFDDVTHDILDKLRSLNIVPIFLLN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWV 192 KID +E + + F+ F +SA G + +L Y+ +APW+ Sbjct: 123 KID-------IESKYLDDIKAFLIGNHPDSLFFPISALSGKNINGLLEYITGKAQIAPWL 175 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y+ D I+DLPM AEITRE+LF +L +E+PY V TEKWE+ KD S+ I QVI V R Sbjct: 176 YAEDDITDLPMRFIAAEITREQLFFNLQQELPYKLTVQTEKWEDLKDKSVKINQVIIVSR 235 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 S K I+LGKNG I+ I +++ ++ PVHL LFVKV + W + P Sbjct: 236 ASYKTIILGKNGSKIREIGSKSRMQMERFFGFPVHLFLFVKVHELWENHP 285 >gi|58040242|ref|YP_192206.1| GTP-binding protein Era [Gluconobacter oxydans 621H] gi|58002656|gb|AAW61550.1| GTP-binding protein [Gluconobacter oxydans 621H] Length = 295 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 114/280 (40%), Positives = 176/280 (62%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R G VALVGA NAGKSTL+NR GAK+SIV+ K QTTR GIV + +QI+ +D P Sbjct: 2 TTRCGFVALVGAPNAGKSTLLNRIAGAKLSIVSPKAQTTRFRTLGIVMQDNAQIILVDLP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF + + M+ +WS + AD+ L+VD+ L+ ++ +++ ++A+ +R+ L+LN Sbjct: 62 GIFKPRRRLDRAMVNAAWSGSQDADLTLLLVDAKSGLREDVREIIAKLAESKNRIWLVLN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K D V+ LL + + L+ +E FM+SA G G D++ L + LP P++Y D + Sbjct: 122 KTDLVERGELLPLTQEISGLINVEHVFMLSARSGEGVSDLMARLAAELPEGPFLYPEDDL 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +DLP AE+ RE++F+ H+EIPY + V TE ++E+ DGS+ I IYV RP K I Sbjct: 182 TDLPDRLLAAELVREQIFMQTHEEIPYQATVETESFKERPDGSVRIEVTIYVSRPGHKAI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++G+ G IK++ A+ E+ E+L++ HL L VK + W Sbjct: 242 LIGEGGHKIKSLGARARMELQELLDRKCHLFLNVKERAGW 281 >gi|103486700|ref|YP_616261.1| GTP-binding protein Era [Sphingopyxis alaskensis RB2256] gi|98976777|gb|ABF52928.1| GTP-binding protein Era [Sphingopyxis alaskensis RB2256] Length = 297 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 117/283 (41%), Positives = 174/283 (61%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 R G VA+VGA NAGKSTLVN VG KV+IV+ K QTTR+ + G+ E E+QIV +DTP Sbjct: 2 TQRCGFVAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRTRLMGVAMEGETQIVLIDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF + M+ +W +++ A+ + ++VD+ + + +L IA R + LILN Sbjct: 62 GIFAPARRLDRAMVAAAWGSLEQAEAILVMVDAAAKPTGRVERVLDGIANRPEKKYLILN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D + ++LL A N + ++TF ++A+ G G ++ +L +P PW + D++ Sbjct: 122 KVDLTRKDKLLTLATDLNAKLTFDETFFIAASSGDGVPELKAHLAGMMPEGPWHFPEDEV 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD P AEITRE+L+ LH+E+PY S V TE + + DGS I Q IYV R +Q+ I Sbjct: 182 SDAPERMLAAEITREQLYRQLHEELPYQSTVETELFRMRPDGSAEIHQQIYVARDNQRAI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +LGK G IK I A+ E+ E++ + VHL L VKV+++W D Sbjct: 242 VLGKGGARIKEIGARARAELTELMGRKVHLFLHVKVKENWDED 284 >gi|294011701|ref|YP_003545161.1| GTP-binding protein Era [Sphingobium japonicum UT26S] gi|292675031|dbj|BAI96549.1| GTP-binding protein Era [Sphingobium japonicum UT26S] Length = 302 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/279 (43%), Positives = 170/279 (60%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VGA NAGKSTLVN VG KV+I + K QTTR+ V G+ E ++Q+V +DTPGIF Sbjct: 11 GVIAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMVLVDTPGIFQ 70 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K + M++ +W + AD++ LVVD L + ++ +A R + LILNK+D Sbjct: 71 PKRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVGALAARPEKKWLILNKVDI 130 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 E+LL + + + I +TF VSA G G ++ +P PW + DQ+SD Sbjct: 131 AIKEKLLVHTQRLYEQLDIAETFFVSAATGDGLPELKTAFARAMPEGPWHFPEDQVSDAT 190 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 AEITRE+L+ LH E+PY++ V TEK+ E+ DGS+ I Q I V R SQ+ I+LGK Sbjct: 191 DRMLAAEITREQLYHQLHAELPYAAAVDTEKYSERDDGSVEIHQQILVGRASQRAIVLGK 250 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 GQ +K I +A+ E+A +L VHL L VKV++DW D Sbjct: 251 GGQRLKEIGSKARAELASLLGVKVHLYLHVKVKEDWEDD 289 >gi|149186755|ref|ZP_01865066.1| GTP-binding protein Era [Erythrobacter sp. SD-21] gi|148829663|gb|EDL48103.1| GTP-binding protein Era [Erythrobacter sp. SD-21] Length = 310 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 127/293 (43%), Positives = 179/293 (61%), Gaps = 8/293 (2%) Query: 16 VQDNS--RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV----SEKE 69 QD S R G VA++GA NAGKSTLVN+ VG KV+I + K QTTR+ + GI E + Sbjct: 6 AQDGSETRCGLVAVIGAPNAGKSTLVNQLVGQKVAITSAKAQTTRARMLGIALHKSEEAD 65 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 +Q+V +DTPGIF+ K + M+ +W + AD V L+VD ++ + + L++ +AKR Sbjct: 66 TQMVLIDTPGIFSPKRKLDRAMVSAAWDGTESADAVLLMVDPIKQRRHELEPLVEALAKR 125 Query: 130 SSRLILILNKIDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 R IL+LNK+D K E LL A E+A K+ F E + VSA G ++ L + +P Sbjct: 126 PERKILVLNKVDAAKKEPLLALAQELAEKVEFAE-VYFVSALTSDGVPELKESLAAMMPE 184 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 PW+Y DQ+SD EITRE+L+ LH+E+PY S V EK+ ++ DGS+ I Q I Sbjct: 185 GPWMYPEDQVSDASERLLATEITREQLYKQLHEELPYDSAVRPEKYIQRPDGSVEIHQQI 244 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 V R +Q+ I+LGK G IK I A++E++E+L Q VHL L VK + W D Sbjct: 245 VVMRDNQRAIVLGKGGSRIKEIGTAAREELSELLGQKVHLFLHVKTDERWSED 297 >gi|209542554|ref|YP_002274783.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5] gi|209530231|gb|ACI50168.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5] Length = 297 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/280 (41%), Positives = 176/280 (62%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R G VA+VGA NAGKSTL+NR GAK+SIV+ K QTTR V GI+ ESQI+ +DTP Sbjct: 2 TTRCGFVAIVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGESQILLVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF + + M+ +W+ + ADI L+VD+ R L ++ +++ +A+ R+ L+LN Sbjct: 62 GIFQPRRKLDRAMVAAAWTGAEDADITLLLVDARRGLSESVRAIVERLAQSRRRVWLVLN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K D V + LL + L+ +E +MVSA G G +D+L+ L ++LP P++Y D + Sbjct: 122 KTDLVDRQALLPLTAELSALLDVEHVYMVSARSGDGVEDLLSALAASLPEGPYLYPEDDL 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +DLP AE+ RE++FL H+E+PY++ TE + E DGS+ I IYV R K I Sbjct: 182 TDLPDRLLAAELVREQIFLQTHEEVPYAATAETESFRELPDGSVRIEVTIYVARAGHKAI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++G+ G I++I A+K+++ +L++ HL L VK + W Sbjct: 242 LIGEKGSRIRSIGERARKDLSRLLDRTCHLFLNVKERAGW 281 >gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes scapularis] gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes scapularis] Length = 567 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 123/289 (42%), Positives = 180/289 (62%), Gaps = 13/289 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++ V ++G N+GKSTL+N +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTP Sbjct: 277 NQKTVSVCIIGRPNSGKSTLLNIIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 336 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + K M+R +WS++ AD+V L++DS + H++L ++ + I +LN Sbjct: 337 GIFEPKGTLEKAMVRCAWSSLHSADLVLLIIDSLKPFDDVTHNILDKLRSLNIVPIFLLN 396 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWV 192 KID +E + + F+ F +SA G D +L Y+ S ++PW+ Sbjct: 397 KID-------IESKYLNDIKAFLTGNHPDSLLFPISALSGKNIDGLLEYITSKAKISPWL 449 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y+ D I+DLPM AEITRE+LFL+L +E+PY V TEKWEE KD S+ I QVI V R Sbjct: 450 YAEDDITDLPMRFIAAEITREQLFLNLQQELPYKLTVQTEKWEELKDKSVKINQVIVVSR 509 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K I+LGKNG IK I +++ ++ PVHL LFVKV++ W ++ Sbjct: 510 ESYKTIILGKNGSKIKEIGAKSRMQMERFFGSPVHLFLFVKVRELWENN 558 >gi|254797278|ref|YP_003082120.1| GTP-binding protein Era [Neorickettsia risticii str. Illinois] gi|254590519|gb|ACT69881.1| GTP-binding protein Era [Neorickettsia risticii str. Illinois] Length = 299 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 119/282 (42%), Positives = 185/282 (65%), Gaps = 5/282 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RS V+L+G +N GKSTL+N +G+K+S VTHKVQTTR+ +RGI ++ ++Q+VF+DTPG Sbjct: 11 TRSAFVSLIGNSNVGKSTLLNALIGSKISAVTHKVQTTRTRIRGIYTKYDTQLVFVDTPG 70 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF + +++++ +W D+ CL++D R + + D+L+ K +L+L++NK Sbjct: 71 IFIPRCQLERVIVKNAWRAFAGTDVFCLIIDPRRPVSDSTKDILR---KADGKLVLVINK 127 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V+ LLE A+ N L + EKTFM+SA KG+G DD++NYL + PW + + + Sbjct: 128 IDLVEKPILLEVAQELNSLSYFEKTFMISALKGNGVDDLMNYLLISAQPGPWYFDKEDET 187 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+P+ +EI REKLF+ LH+E+PYS V TE E D S+ IRQV++V S K I+ Sbjct: 188 DMPLGFNLSEILREKLFIRLHQELPYSLTVETENI-EILDKSVKIRQVVHVMSESHKMIV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILE-QPVHLILFVKVQKDWGH 300 +G G+ I TI A+KE+ ++ + V+L +FV+V +WG Sbjct: 247 IGSCGKTIGTIRKSAEKEMEDLFPGRKVYLSIFVRVSPNWGE 288 >gi|88608771|ref|YP_506823.1| GTP-binding protein Era [Neorickettsia sennetsu str. Miyayama] gi|88600940|gb|ABD46408.1| GTP-binding protein Era [Neorickettsia sennetsu str. Miyayama] Length = 308 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 119/283 (42%), Positives = 184/283 (65%), Gaps = 5/283 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++RS V+L+G +N GKSTL+N +G+K+S VTHKVQTTR+ +RGI ++ + Q+VF+DTP Sbjct: 19 STRSAFVSLIGNSNVGKSTLLNALIGSKISAVTHKVQTTRTRIRGIYTKDDVQLVFVDTP 78 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF + +++++ +W DI C ++D R + + D+L+ K + +L+L++N Sbjct: 79 GIFIPRCQLERVIVKNAWRAFAGTDIFCFIIDPRRPISDSTKDILR---KANGKLVLVIN 135 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V+ RLLE A+ N L EKTFM+SA KG+G D++NYL + PW + + Sbjct: 136 KIDLVEKPRLLEVAQELNSLGHFEKTFMISALKGNGVADLMNYLLKSAQPGPWYFDKEDE 195 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D+P+ +EI REKLF+ LH+E+PYS V TE E D S+ IRQV++V S K I Sbjct: 196 TDMPLGFNLSEILREKLFIRLHQELPYSLTVETENI-EILDRSVKIRQVLHVMSESHKMI 254 Query: 259 MLGKNGQNIKTISLEAKKEIAEILE-QPVHLILFVKVQKDWGH 300 ++G G+ I TI A++E+A + + V+L +FV+V +WG Sbjct: 255 VIGSCGKTIGTIRKSAEREMANLFSGRKVYLSIFVRVSPNWGE 297 >gi|67459566|ref|YP_247190.1| GTP-binding protein Era [Rickettsia felis URRWXCal2] gi|75536034|sp|Q4UKB0|ERA_RICFE RecName: Full=GTPase Era gi|67005099|gb|AAY62025.1| GTP-binding protein Era [Rickettsia felis URRWXCal2] Length = 293 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/281 (43%), Positives = 176/281 (62%), Gaps = 13/281 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++Q++ DTPGIF K + Sbjct: 11 IIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGT 70 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K M+R +WS++ AD+V L++DS + +HD+L ++ + I +LNKID Sbjct: 71 LEKAMVRCAWSSLHSADLVMLIIDSLKPFDDVMHDILDKLRSLNIVPIFLLNKID----- 125 Query: 147 RLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 +E + + F+ + F +SA G D +L Y+ ++PW+Y+ D I+D Sbjct: 126 --IESKYLDDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITGKAKISPWLYAEDDITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 LPM AEITRE+LF +L +E+PY V TEKWE KD SI I QVI V R S K I+L Sbjct: 184 LPMRFIAAEITREQLFFNLQQELPYKLTVQTEKWEVLKDKSIKINQVIVVSRESYKTIIL 243 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 GKNG IK I +++ ++ PVHL LFVKV++ W ++ Sbjct: 244 GKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENN 284 >gi|85708366|ref|ZP_01039432.1| GTPase [Erythrobacter sp. NAP1] gi|85689900|gb|EAQ29903.1| GTPase [Erythrobacter sp. NAP1] Length = 302 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 125/285 (43%), Positives = 176/285 (61%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q +R G VA++GA NAGKSTLVN+ VG KV+I + K QTTR+ + GI Q++ +D Sbjct: 5 QTPTRCGVVAVIGAPNAGKSTLVNQLVGQKVAITSAKAQTTRARMLGIALHGSVQMILVD 64 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGIF K + M+ +W + AD V L+VD ++ + + LL+ + +RS R IL+ Sbjct: 65 TPGIFAPKRRLDRAMVSAAWEGAESADAVLLIVDPIKQRRHELEPLLEALEQRSERKILV 124 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNK+D K E LLE A+ ++ + E+ F VSA G G ++ L +P W+Y D Sbjct: 125 LNKVDKAKKEPLLELAQEMSQRIDFEEIFFVSALSGDGVAEMKEALAEQMPEGVWMYPED 184 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q+SD AEITRE+L+ LH+E+PY S V E+++ + DGS+ I Q I V R +Q+ Sbjct: 185 QVSDASERLLAAEITREQLYQQLHEELPYDSAVRPEQYKTRPDGSLEIHQQIIVARETQR 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I+LGK GQ IK I A+KE+AEIL VHL L VKV ++W D Sbjct: 245 GIVLGKGGQKIKAIGEAARKELAEILGVKVHLFLHVKVLENWSED 289 >gi|114570120|ref|YP_756800.1| GTP-binding protein Era [Maricaulis maris MCS10] gi|122315961|sp|Q0APC5|ERA_MARMM RecName: Full=GTPase Era gi|114340582|gb|ABI65862.1| GTP-binding protein Era [Maricaulis maris MCS10] Length = 314 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 173/292 (59%), Gaps = 14/292 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G A++G+ NAGKSTLVN VG KV+IVTHKVQTTR VRG+ E+QIV +DTPG+ Sbjct: 7 RCGFAAVIGSPNAGKSTLVNALVGEKVTIVTHKVQTTRFAVRGVALAGETQIVLVDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK-------------VNIHDLLKE-I 126 F K K M+ +WS AD + VVD+ + V D + E + Sbjct: 67 FAPKTRLDKSMVAAAWSGAGEADTIMHVVDAGARARMEHGGAKSGDSRMVEDDDRVTEGL 126 Query: 127 AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K + IL+LNK+D + ++LL ++ + + FM+SA G G + ++ + Sbjct: 127 KKTEQKAILVLNKVDLMPRDQLLAMSQELYETGVYSEVFMISAKTGSGVPQLREFIAGLM 186 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQ 246 P W Y ADQ++DLP AEITREK++L LH+E+PY+S V TE W++ +DGS+ I Q Sbjct: 187 PEGVWHYPADQVADLPARILAAEITREKVYLRLHEELPYASMVETEVWKKLRDGSLRIEQ 246 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I VER +QK I+LGK G +K+I ++KE+ E+L VHL L VKV W Sbjct: 247 SIIVERETQKPIVLGKGGSAVKSIGEASRKELEEVLGCKVHLFLNVKVDAKW 298 >gi|87199823|ref|YP_497080.1| GTP-binding protein Era [Novosphingobium aromaticivorans DSM 12444] gi|87135504|gb|ABD26246.1| GTP-binding protein Era [Novosphingobium aromaticivorans DSM 12444] Length = 297 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/277 (42%), Positives = 166/277 (59%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA++GA NAGKSTLVN VG KV+IV+ K QTTR+ + GI E E+QI+ DTPG+F Sbjct: 6 GLVAVLGAPNAGKSTLVNALVGQKVAIVSAKAQTTRARLMGIALEGEAQIILADTPGLFE 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + M+ +W + AD + LVVD+ ++ + + +L + +R R IL+LNK+D Sbjct: 66 PRRRLDRAMVSAAWDGAQEADAILLVVDARKKKRDYLEPILASLRERPERKILVLNKVDS 125 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 E LL AE ++ F VSA G G ++ L +P + W Y DQ+SD Sbjct: 126 TPKEPLLVMAEALTGEAAFDEVFFVSALTGDGVPELKRRLAELMPESAWHYPEDQVSDAS 185 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 AEITRE+L+ LH E+PY S V EK+ +KDGSI I Q I + R +Q+ I+LGK Sbjct: 186 ERLMAAEITREQLYRQLHDELPYDSTVRPEKYLHRKDGSIEIHQQIVIARETQRPIVLGK 245 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 G IK I A+KE++++L+ VHL L VKV + W Sbjct: 246 GGAKIKAIGEAARKELSQLLDTKVHLFLHVKVDERWA 282 >gi|326387677|ref|ZP_08209283.1| GTP-binding protein Era [Novosphingobium nitrogenifigens DSM 19370] gi|326207723|gb|EGD58534.1| GTP-binding protein Era [Novosphingobium nitrogenifigens DSM 19370] Length = 312 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 119/289 (41%), Positives = 169/289 (58%), Gaps = 6/289 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA++GA NAGKSTLVN VG KV+IV+ K QTTR+ + GI E +QI+ +DTPG+F Sbjct: 21 GLVAVIGAPNAGKSTLVNALVGQKVAIVSSKAQTTRARLMGIALEGPAQIILVDTPGLFE 80 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + M+ +W + AD + LVVD+ ++ + + +L + +R R IL+LNK+D Sbjct: 81 PRRRLDRAMVHAAWEGAEAADAIVLVVDARKKKRDYLEGILATLKERPERRILVLNKVDS 140 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 E LL A+ ++ F VSA G G + L + +P PW Y DQ+SD Sbjct: 141 TAKEPLLVAAQELAAAGGFDEVFFVSALTGDGVSEFKTRLGALMPEGPWHYPEDQVSDAS 200 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 AEITRE+L+ LH E+PY S V E + + DGSI I Q I + R SQ+ I+LGK Sbjct: 201 ERLLAAEITREQLYRQLHDELPYDSAVRPESYRPRPDGSIEIHQQIVIARDSQRPIVLGK 260 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQREIF 311 G +K I A++E+AE+L VHL L VKV+++W REI+ Sbjct: 261 GGSKLKAIGEAARRELAELLGCRVHLFLHVKVEENWAE------SREIY 303 >gi|330993373|ref|ZP_08317308.1| GTP-binding protein era-like protein [Gluconacetobacter sp. SXCC-1] gi|329759403|gb|EGG75912.1| GTP-binding protein era-like protein [Gluconacetobacter sp. SXCC-1] Length = 305 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 115/286 (40%), Positives = 173/286 (60%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D +R G VA+VGA NAGKSTL+NR G K+SIV+ K QTTR V GI+ +QI Sbjct: 4 QDHDTTTTRCGFVAIVGAPNAGKSTLLNRMAGTKLSIVSPKAQTTRFRVLGILMRHGAQI 63 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 + +DTPGIF + + M+ +W+ ADI L+VD+ + + + +A++ R Sbjct: 64 LLVDTPGIFQPRRRLDRAMVAAAWTGSDDADITLLIVDARAGMTDALRAIAARLAEQKRR 123 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L L+LNK D VK + LL + ++ +E FMVSA G G DD+L+ L + LP P++ Sbjct: 124 LWLVLNKTDLVKRDTLLPLTAELSAILPVEHVFMVSARSGEGVDDLLDRLAAALPAGPYL 183 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D ++DLP AE+ RE++FL H+E+PY++ V TE ++E+ DGS+ I +YV R Sbjct: 184 YPEDDLTDLPDRLLAAELVREQIFLQTHEEVPYAATVETEAFQERPDGSVRIEVTVYVAR 243 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++G+ G I+ I +A+ E+ +L + HL L VK + W Sbjct: 244 ASHKAILIGERGSRIRAIGEKARHELGRLLGRTCHLFLNVKERAGW 289 >gi|88607820|ref|YP_504957.1| GTP-binding protein Era [Anaplasma phagocytophilum HZ] gi|88598883|gb|ABD44353.1| GTP-binding protein Era [Anaplasma phagocytophilum HZ] Length = 305 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 122/281 (43%), Positives = 183/281 (65%), Gaps = 2/281 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TNAGKSTL+N+ VG K SIVT+KV TTR + +++E Q+VF DTPGIF+ K Sbjct: 22 VAVVGMTNAGKSTLINKLVGFKASIVTNKVHTTRVKMNSVLNEGNVQLVFTDTPGIFSPK 81 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 K +++ +W ++K AD+V LV+D+ R + V++ ++K + + + I ++NK+D + Sbjct: 82 TKLEKFIVKNAWMSMKGADMVILVLDAKRRICVHVEKIIKRLQRDNVASIAVINKMDLLD 141 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 L AE L ++ F VS+ G G D+++YL + PW+Y + +D + Sbjct: 142 EGELATFAERVQLLHKFDRVFTVSSLYGTGVRDLIDYLQESACDGPWLYPEEYRTDATLE 201 Query: 205 HFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNG 264 F AEITREKL+L L +E+PYS VVTE+ EEK D SI+I+QVIYV + SQK I++G + Sbjct: 202 FFAAEITREKLYLALRQELPYSLSVVTEQIEEKGD-SIIIKQVIYVMKESQKTIVVGADA 260 Query: 265 QNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW-GHDPKC 304 IK++S A+ E++ +L + VHL LFVKV+K W H +C Sbjct: 261 ALIKSVSTAARYELSAMLNKKVHLYLFVKVRKFWQDHLEEC 301 >gi|15603995|ref|NP_220510.1| GTP-binding protein Era [Rickettsia prowazekii str. Madrid E] gi|6225298|sp|Q9ZE30|ERA_RICPR RecName: Full=GTPase Era gi|3860686|emb|CAA14587.1| GTP-BINDING PROTEIN ERA (era) [Rickettsia prowazekii] gi|292571711|gb|ADE29626.1| GTP-binding protein Era [Rickettsia prowazekii Rp22] Length = 295 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 123/287 (42%), Positives = 180/287 (62%), Gaps = 13/287 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GIV+ K++QI+ DTPGI Sbjct: 7 KTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIVTLKDTQIILYDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F K K M+R +WS++ AD+V ++DS + L H++L + + I +LNKI Sbjct: 67 FEPKGMLEKAMVRCAWSSVYSADLVLSIIDSLKPLDNIAHNILNQFCLLNIVPIFLLNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D +E + + F++ T F +SA G D +L Y+ S ++PW+Y+ Sbjct: 127 D-------IESKYLNDIKAFLKITHPKSLLFPISALLGKNVDVLLEYIKSKAKVSPWLYA 179 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I++LPM AEITRE+LFL+L +E+PY V TEK+EE KD SI I QVI + R + Sbjct: 180 DDDITNLPMRFIAAEITREQLFLNLQQELPYKLTVQTEKFEELKDKSIKINQVIVISREN 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I+LGKNG IK I ++++ ++ + PVHL LFVKV W ++ Sbjct: 240 YKAIILGKNGAKIKDIGVKSRVQLEQFFCVPVHLFLFVKVHAFWENN 286 >gi|114327657|ref|YP_744814.1| GTP-binding protein Era [Granulibacter bethesdensis CGDNIH1] gi|114315831|gb|ABI61891.1| GTP-binding protein era [Granulibacter bethesdensis CGDNIH1] Length = 335 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 177/299 (59%), Gaps = 7/299 (2%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E TF E++ +R G AL+GA NAGKSTLVN GAKVSIV+ K QTTR V GI Sbjct: 23 EGTFSAENRLGGSGKTRCGYAALLGAPNAGKSTLVNALTGAKVSIVSPKAQTTRFRVLGI 82 Query: 65 V-----SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 + + SQI+ +DTPGIF + + M+ +W+ ++ AD+ L+VD+ L ++ Sbjct: 83 AMHQTEAGETSQILMVDTPGIFTPRRRLDRAMVAAAWTGVQDADLGLLMVDARAGLTEDV 142 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +++ + R R L+LNK+D V LL A+ + L E+TF +SA K G D +L Sbjct: 143 RAIIERLGNR--RTWLVLNKVDLVPAPSLLPLAQALSDLAKFEETFFISAAKRDGLDMLL 200 Query: 180 NYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD 239 L +P P +Y D ++DLP AEI RE++FL H+EIPYS+ V TE ++E+ D Sbjct: 201 TALAQAMPPGPHLYPDDDLTDLPDRLLAAEIVREQIFLQTHEEIPYSATVETEAFQERPD 260 Query: 240 GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GS I +YV RP K I++G G IK I A++E++ +L++PVHL L VK + W Sbjct: 261 GSARIEATVYVARPGHKAILIGAGGSRIKQIGARARQELSSLLDRPVHLFLNVKERAGW 319 >gi|51473231|ref|YP_066988.1| GTP-binding protein Era [Rickettsia typhi str. Wilmington] gi|81390309|sp|Q68XY6|ERA_RICTY RecName: Full=GTPase Era gi|51459543|gb|AAU03506.1| Era-like GTP-binding protein [Rickettsia typhi str. Wilmington] Length = 295 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 122/284 (42%), Positives = 179/284 (63%), Gaps = 13/284 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++ V ++G N+GKSTL+NR +G K+SIVT KVQTTRSI+ GI++ K++QI+ DTPGI Sbjct: 7 KTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQIILYDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F K K M+R +WS++ AD+V ++DS + L H++L + + I +LNKI Sbjct: 67 FEPKGMLEKAMVRCAWSSLYSADLVLSIIDSLKPLDDMAHNILNQFCLLNIVPIFLLNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D +E + + F++ + F +SA G D +L Y+ S ++PW+Y+ Sbjct: 127 D-------IESKYLNDIKAFLKISHPKSLLFPISALCGKNVDVLLKYIKSKAKVSPWLYA 179 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I++LPM AEITRE+LFL+L +E+PY V TEK+EE KD SI I QVI + R S Sbjct: 180 DDDITNLPMRFIAAEITREQLFLNLQQELPYKLTVQTEKFEELKDKSIKINQVIVISRES 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I+LGKNG IK I ++++ ++ ++ PVHL LFVKV W Sbjct: 240 YKAIILGKNGTKIKDIGVKSRIQMEQLFCVPVHLFLFVKVHALW 283 >gi|189182921|ref|YP_001936706.1| GTP-binding protein Era [Orientia tsutsugamushi str. Ikeda] gi|189179692|dbj|BAG39472.1| GTP-binding protein Era [Orientia tsutsugamushi str. Ikeda] Length = 306 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 117/294 (39%), Positives = 177/294 (60%), Gaps = 3/294 (1%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 E K+ + ++ V+++G N+GKSTL+NR +G K+SIVT KVQTTRS + GIV+ Sbjct: 1 MTESKNRLDKQQKTMVVSILGMPNSGKSTLLNRLIGQKISIVTPKVQTTRSAITGIVTYN 60 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +Q++F+DTPGIF K + K M+R +W++I ADI L++D ++L I +L + Sbjct: 61 LTQLIFIDTPGIFQPKKTLEKAMVRCAWTSIVGADIALLIIDITKKLNEQIQIILTRLIS 120 Query: 129 RSSRLILILNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + +ILNKID CV L + +L K +SA G+G ++L Y+ + P Sbjct: 121 QKIKFCIILNKIDICV--NNLTQLMNDLKQLSINAKIIAISALNGNGVQELLQYISTIAP 178 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 + PW+Y D I+ M EITRE+LFL LH+E+PY+ V E+WE+ DGS+ I Q Sbjct: 179 IRPWLYDEDDITTASMKFLAQEITREQLFLALHQELPYNITVEHERWEQLNDGSVKIYQA 238 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I + + K I+LGK G IK+I +A+ + +IL V LILFVK++ W + Sbjct: 239 IVANKDNYKAIILGKAGSRIKSIGQKARFAMQKILNLKVCLILFVKIRPTWDQE 292 >gi|148284268|ref|YP_001248358.1| GTP-binding protein Era [Orientia tsutsugamushi str. Boryong] gi|146739707|emb|CAM79520.1| GTP-binding protein [Orientia tsutsugamushi str. Boryong] Length = 306 Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 115/293 (39%), Positives = 176/293 (60%), Gaps = 1/293 (0%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 E K+ + ++ V+++G N+GKSTL+NR +G K+SIVT KVQTTRS + GIV+ Sbjct: 1 MTESKNRLDKQQKTMVVSILGMPNSGKSTLLNRLIGQKISIVTPKVQTTRSAITGIVTYN 60 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +Q++F+DTPGIF K + K M+R +W++I ADI L++D ++L I +L + Sbjct: 61 LTQLIFIDTPGIFQPKKTLEKAMVRCAWTSIVGADIALLIIDITKKLNEQIQIILTRLIS 120 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + + +ILNKID + L + +L K +SA G+G ++L Y+ + P+ Sbjct: 121 QKIKFCIILNKID-IGLNNLTQLMNDLKQLSINAKIIAISALNGNGVQELLQYISTIAPI 179 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 PW+Y D I+ M EITRE+LFL LH+E+PY+ V E+WE+ DGS+ I Q I Sbjct: 180 RPWLYDEDDITTASMKFLAQEITREQLFLALHQELPYNITVEHERWEQLNDGSVKIYQAI 239 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + + K I+LGK G IK+I +A+ + +IL V LILFVK++ W + Sbjct: 240 VANKDNYKAIILGKAGSRIKSIGQKARFAMQQILNLKVCLILFVKIRPSWDRE 292 >gi|326402426|ref|YP_004282507.1| GTP-binding protein Era [Acidiphilium multivorum AIU301] gi|325049287|dbj|BAJ79625.1| GTP-binding protein Era [Acidiphilium multivorum AIU301] Length = 295 Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 116/280 (41%), Positives = 168/280 (60%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R G VAL+G NAGKSTL+N+ VGAKVSIVT K QTTR + GIV QIV +DTP Sbjct: 2 TTRCGYVALLGRPNAGKSTLLNQAVGAKVSIVTPKAQTTRFRISGIVMRGGDQIVLVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + M+ +W + AD+ CL+VD+ + ++ + ++ +A LILN Sbjct: 62 GIFAPKRRLDRAMVAAAWEGVAGADLACLIVDAAKADPDDLAEPIEALAATGRPRWLILN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + ++LL AE + + FM+SA K G D +L+ L + +P P +Y D++ Sbjct: 122 KIDLLPRDKLLPLAETLARQGGFAEVFMISALKRDGVDRLLDALAAAMPEGPHLYPEDEL 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D AE+ RE++FL L E+PY + V TE + E+KDGS+ I +YV R KKI Sbjct: 182 TDQTERMLAAELVREQIFLQLRDEVPYGASVETESFSERKDGSVRIDVTVYVARAGHKKI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +LG+ G IK+I A++++ LE+ VHL L VK + W Sbjct: 242 VLGEGGARIKSIGSRARRDLERQLERRVHLFLNVKERPGW 281 >gi|148259271|ref|YP_001233398.1| GTP-binding protein Era [Acidiphilium cryptum JF-5] gi|146400952|gb|ABQ29479.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5] Length = 295 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 115/280 (41%), Positives = 168/280 (60%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R G VAL+G NAGKSTL+N+ +GAKVSIVT K QTTR + GIV QIV +DTP Sbjct: 2 TTRCGYVALLGRPNAGKSTLLNQAIGAKVSIVTPKAQTTRFRISGIVMRGGDQIVLVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GIF K + M+ +W + AD+ CL+VD+ + ++ + ++ +A LILN Sbjct: 62 GIFAPKRRLDRAMVAAAWEGVAGADLACLIVDAAKADPDDLAEPIEALAATGRPRWLILN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + ++LL AE + + FM+SA K G D +L+ L + +P P +Y D++ Sbjct: 122 KIDLLPRDKLLPLAETLARQGGFAEVFMISALKRDGVDRLLDALAAAMPEGPHLYPEDEL 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D AE+ RE++FL L E+PY + V TE + E+KDGS+ I +YV R KKI Sbjct: 182 TDQTERMLAAELVREQIFLQLRDEVPYGASVETESFSERKDGSVRIDVTVYVARAGHKKI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +LG+ G IK+I A++++ LE+ VHL L VK + W Sbjct: 242 VLGEGGARIKSIGSRARRDLERQLERRVHLFLNVKERPGW 281 >gi|258404222|ref|YP_003196964.1| GTP-binding protein Era [Desulfohalobium retbaense DSM 5692] gi|257796449|gb|ACV67386.1| GTP-binding protein Era [Desulfohalobium retbaense DSM 5692] Length = 312 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 123/288 (42%), Positives = 186/288 (64%), Gaps = 8/288 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G NAGKSTL+N+F+G KV+IV+ K QTTR+ + GI+S E+Q+VFLDTPG+ Sbjct: 15 RSGLVAIIGPPNAGKSTLLNQFLGQKVAIVSPKPQTTRNQISGILSTDEAQVVFLDTPGV 74 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSRLI 134 + +++ M+ +W + ++ V LV+D+ + L+ + + K + + + + Sbjct: 75 HKSGQRFNRYMVDAAWRALTASEAVLLVLDAGLYLARPQLLERDTSLMRKRVQQSGNPVF 134 Query: 135 LILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L LNK D +K + RLL + ++L + +SA +G+ D +L+ L LP P +Y Sbjct: 135 LALNKTDTIKDKSRLLPLLQRLSELWPEAELHPISALRGNETDALLSGLLGALPEGPPLY 194 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 DQIS LPM TAEI REKLFL L KE+PY+ V+ E+WEE+ G I + IYV RP Sbjct: 195 PEDQISTLPMRFMTAEIIREKLFLALEKELPYNLAVIVEQWEERPTG-ISVYATIYVARP 253 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQK I++GK G+ +K I +++ E+AE++E+PVHL L+VKV+K W D Sbjct: 254 SQKAIVIGKGGRLLKEIGQQSRLELAEMIEKPVHLDLWVKVKKRWHED 301 >gi|296283698|ref|ZP_06861696.1| GTP-binding protein Era [Citromicrobium bathyomarinum JL354] Length = 292 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 115/280 (41%), Positives = 175/280 (62%), Gaps = 6/280 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV----SEKESQIVFLDTPGIFN 82 ++GA NAGKSTLVN VG KV+IV+ K QTTR+ + GI + +Q++ +DTPGIF Sbjct: 1 MLGAPNAGKSTLVNALVGQKVAIVSAKAQTTRARMLGIALHENDDANTQMILVDTPGIFA 60 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + M+ +W + AD V L+VD ++ + + L++++A+R + IL+LNK+D Sbjct: 61 PRRRLDRAMVSAAWEGAESADAVLLLVDPIKQRRHELEPLIEQLAQRPEKKILVLNKVDI 120 Query: 143 VKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 K E LL A E++ K+ F E + +SA G G ++ + L + +P W+Y DQ+SD Sbjct: 121 AKKEPLLALAQELSTKVDFAE-IYFISALSGDGVTELKDALAAEMPEGEWMYPEDQVSDA 179 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 EITRE+L+ LH+E+PY S V EK+ E+KDGS+ I Q I V R +Q+ I+LG Sbjct: 180 SERLLATEITREQLYRQLHEELPYDSMVRPEKYVERKDGSVEIHQQIIVARDNQRMIVLG 239 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K G IK+I A++E++E+L + VHL L VK ++W D Sbjct: 240 KGGSKIKSIGQAAREELSELLGRKVHLFLHVKATENWAED 279 >gi|85373794|ref|YP_457856.1| GTP-binding protein Era [Erythrobacter litoralis HTCC2594] gi|122544698|sp|Q2NB82|ERA_ERYLH RecName: Full=GTPase Era gi|84786877|gb|ABC63059.1| GTPase [Erythrobacter litoralis HTCC2594] Length = 304 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 116/286 (40%), Positives = 173/286 (60%), Gaps = 4/286 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV----SEKESQIVFL 75 S+ G VA++GA NAGKSTLVN+ VG KV+I + K QTTR+ + GI + ++Q++ + Sbjct: 6 SKCGVVAVLGAPNAGKSTLVNQLVGQKVAITSAKAQTTRARMLGIALHESDDAKTQMILV 65 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGIF + + M+ +W + AD V L+VD ++ + + LL+ + R R IL Sbjct: 66 DTPGIFAPRRRLDRAMVSAAWEGAESADAVLLLVDPVKQRRHELEPLLESLKDRPERKIL 125 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +LNK+D K E LL A+ ++ V + + VSA G G ++ N L + +P W Y Sbjct: 126 VLNKVDVAKKEPLLALAQDLSQKVDFAEIYFVSALTGDGVPEMKNALAALMPEGVWHYPE 185 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ+SD EITRE+L+ LH+E+PY S V E+++++ DGS+ I Q I + R SQ Sbjct: 186 DQVSDASERLLATEITREQLYQQLHEELPYDSAVRPEQYKQRPDGSLEIHQQIVIARESQ 245 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + I+LGK G IK I A+K+++EIL VHL L VKV + W + Sbjct: 246 RPIVLGKGGSRIKAIGEAARKDLSEILGVTVHLFLHVKVDEKWAEN 291 >gi|46578469|ref|YP_009277.1| GTP-binding protein Era [Desulfovibrio vulgaris str. Hildenborough] gi|120603947|ref|YP_968347.1| GTP-binding protein Era [Desulfovibrio vulgaris DP4] gi|81567485|sp|Q72G11|ERA_DESVH RecName: Full=GTPase Era gi|189037267|sp|A1VHK4|ERA_DESVV RecName: Full=GTPase Era gi|46447880|gb|AAS94536.1| GTP-binding protein Era [Desulfovibrio vulgaris str. Hildenborough] gi|120564176|gb|ABM29920.1| GTP-binding protein Era [Desulfovibrio vulgaris DP4] gi|311232397|gb|ADP85251.1| GTP-binding protein Era [Desulfovibrio vulgaris RCH1] Length = 308 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 116/293 (39%), Positives = 184/293 (62%), Gaps = 8/293 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q R G VAL+G NAGKSTL+N +G KV+IVT K QTTR+ + GI+S K++Q+VF+D Sbjct: 3 QTTHRCGWVALIGPPNAGKSTLLNALIGQKVAIVTSKPQTTRNQIVGILSRKDAQVVFMD 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK------VNIHDLLKEIAKRS 130 TPGI + +K++++ +W ++ AD + +++D ++ +I L++ IA + Sbjct: 63 TPGIHQLRGRLNKMLLQTAWQSMNAADALIVMLDGDLYIRKPDLLDRDIAPLVEPIAAET 122 Query: 131 SRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +++++NKID + + ++L E + + + F SA G D +L + +P Sbjct: 123 RPVVVVVNKIDLFRDKSKMLPLLERLSAMWPKAEVFPASALNKDGMDHLLRLIVGYMPEG 182 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVI 248 P +Y DQIS LP+ TAEI REK+F L +E+PYS+ V E+WEE++ +++ VI Sbjct: 183 PALYPEDQISTLPVRFMTAEIVREKVFNKLRQELPYSTAVDIEQWEEEEGRDQVIVNAVI 242 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 YV RPS K +++GK G IK I +EA+K+I E+LE+ VHL L+VKV++ W D Sbjct: 243 YVARPSHKSMVIGKGGATIKEIGIEARKDIQELLEKRVHLELWVKVREGWTED 295 >gi|238853405|ref|ZP_04643784.1| GTP-binding protein Era [Lactobacillus gasseri 202-4] gi|238833977|gb|EEQ26235.1| GTP-binding protein Era [Lactobacillus gasseri 202-4] Length = 303 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 180/297 (60%), Gaps = 10/297 (3%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 +E KD+ +SG VAL+G N GKSTL+N VG KV+I++ + QTTR+ + GI ++ Sbjct: 1 MMDEKKDY-----KSGFVALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTD 55 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 + QIVF+DTPGI K+ M + S+S + D+V +V+ K + I +LLK+ Sbjct: 56 DQEQIVFIDTPGIHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKK 115 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I K + L++NKID V P++LL + L + +SA++G+ +++ + Sbjct: 116 IKKP---VFLVINKIDKVHPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKN 172 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 LP P Y ADQ++D P + AE+ RE++ H+E+P+++ VV ++ + + G + I Sbjct: 173 LPEGPQFYDADQLTDRPEYFIVAELIREQVLKLTHEEVPHATAVVVDRMRDHEGGKLQIE 232 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 IYVERP QK I++GK GQ +K I + A++EI +L + V+L L+VKVQK+W DP Sbjct: 233 ATIYVERPGQKGIIIGKKGQMLKQIGIAARQEIEALLGEKVNLRLWVKVQKNWRSDP 289 >gi|42519246|ref|NP_965176.1| GTP-binding protein Era [Lactobacillus johnsonii NCC 533] gi|41583534|gb|AAS09142.1| GTP-binding protein era-like protein [Lactobacillus johnsonii NCC 533] gi|329667244|gb|AEB93192.1| GTP-binding protein era protein [Lactobacillus johnsonii DPC 6026] Length = 303 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 179/297 (60%), Gaps = 10/297 (3%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 +E KDF +SG VAL+G N GKSTL+N VG KV+I++ + QTTR+ + GI ++ Sbjct: 1 MMDEKKDF-----KSGFVALIGRPNVGKSTLLNYLVGQKVAIMSPQPQTTRNKISGIYTD 55 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 + QIVF+DTPGI K+ M + S+S + D+V +V+ K + I +LLK+ Sbjct: 56 DQEQIVFIDTPGIHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKK 115 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I K + L++NKID V P+ LL + L + +SA++G+ +++ + Sbjct: 116 IKKP---VFLVINKIDKVHPDELLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKY 172 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 LP P Y ADQ++D P + AE+ RE++ H+E+P+++ VV ++ + + G + + Sbjct: 173 LPEGPQFYDADQLTDRPEYFIVAELIREQVLKLTHEEVPHATAVVVDRMRDHEGGKLQVE 232 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 IYVERP QK I++GK GQ +K I + A++EI +L + V+L L+VKVQK+W DP Sbjct: 233 ATIYVERPGQKGIIIGKKGQMLKQIGIAARQEIEALLGEKVNLRLWVKVQKNWRSDP 289 >gi|269958647|ref|YP_003328434.1| GTP-binding protein Era [Anaplasma centrale str. Israel] gi|269848476|gb|ACZ49120.1| GTP-binding protein Era [Anaplasma centrale str. Israel] Length = 297 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 117/282 (41%), Positives = 172/282 (60%), Gaps = 1/282 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D+ + VA+VGATNAGKSTL+N VG K SIVT KV TTR + + ++ Q+VF D Sbjct: 4 RDSEKCSLVAVVGATNAGKSTLINELVGFKASIVTPKVHTTRVRMNAVRNDGNVQLVFTD 63 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+F K K +++ +W +I+ ADIV LV+++ L + ++ ++ + + Sbjct: 64 TPGVFAPKTVLEKFLVKNAWMSIRGADIVVLVLEARNYLCSQVARVVAKVKHSHIPAVAV 123 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNK D ++ R+ E + F VSA G G + +L +L + PW+Y Sbjct: 124 LNKTDLLQECRIREILAHVQSMHEFTGIFAVSALHGLGTEALLTHLRESADYCPWLYPGT 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q +D + F AEITREKLFL L +E+PYS VVTEK+E++ S++I+QV+YV + SQK Sbjct: 184 QRTDATVEFFVAEITREKLFLALRQELPYSLSVVTEKFEDRGR-SVIIKQVVYVIKESQK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GKN IK +S A++EI IL + HL LFVKV+K W Sbjct: 243 TIVVGKNAALIKGVSTAAREEIERILGKKAHLFLFVKVRKFW 284 >gi|227890109|ref|ZP_04007914.1| GTP-binding protein Era [Lactobacillus johnsonii ATCC 33200] gi|268319372|ref|YP_003293028.1| GTP-binding protein [Lactobacillus johnsonii FI9785] gi|227849553|gb|EEJ59639.1| GTP-binding protein Era [Lactobacillus johnsonii ATCC 33200] gi|262397747|emb|CAX66761.1| GTP-binding protein [Lactobacillus johnsonii FI9785] Length = 303 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 179/297 (60%), Gaps = 10/297 (3%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 +E KDF +SG VAL+G N GKSTL+N VG KV+I++ + QTTR+ + GI ++ Sbjct: 1 MMDEKKDF-----KSGFVALIGRPNVGKSTLLNYLVGQKVAIMSPQPQTTRNKISGIYTD 55 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 + QIVF+DTPGI K+ M + S+S + D+V +V+ K + I +LLK+ Sbjct: 56 DQEQIVFIDTPGIHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKK 115 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I K + L++NKID V P+ LL + L + +SA++G+ +++ + Sbjct: 116 IKKP---VFLVINKIDKVHPDELLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKY 172 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 LP P Y ADQ++D P + AE+ RE++ H+E+P+++ VV ++ + + G + + Sbjct: 173 LPEGPQFYDADQLTDRPEYFIVAELIREQVLKLTHEEVPHATAVVVDRMRDHEGGKLQVE 232 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 IYVERP QK I++GK GQ +K I + A++EI +L + V+L L+VKVQK+W DP Sbjct: 233 ATIYVERPGQKGIIIGKKGQMLKQIGIAARQEIEALLGEKVNLRLWVKVQKNWRSDP 289 >gi|116629756|ref|YP_814928.1| GTP-binding protein Era [Lactobacillus gasseri ATCC 33323] gi|116095338|gb|ABJ60490.1| GTPase [Lactobacillus gasseri ATCC 33323] Length = 303 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 180/297 (60%), Gaps = 10/297 (3%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 +E KD+ +SG VAL+G N GKSTL+N VG KV+I++ + QTTR+ + GI ++ Sbjct: 1 MMDEKKDY-----KSGFVALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTD 55 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 + QIVF+DTPGI K+ M + S+S + D+V +V+ K + I +LLK+ Sbjct: 56 DQEQIVFIDTPGIHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKK 115 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I K + L++NKID V P++LL + L + +SA++G+ +++ + Sbjct: 116 IKKP---VFLVINKIDKVHPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKY 172 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 LP P Y ADQ++D P + AE+ RE++ H+E+P+++ VV ++ + + G + I Sbjct: 173 LPEGPQFYDADQLTDRPEYFIVAELIREQVLKLTHEEVPHATAVVVDRMRDHEGGKLQIE 232 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 IYVERP QK I++GK GQ +K I + A++EI +L + V+L L+VKVQK+W DP Sbjct: 233 ATIYVERPGQKGIIIGKKGQMLKQIGIAARQEIEALLGEKVNLRLWVKVQKNWRSDP 289 >gi|311110602|ref|ZP_07711999.1| GTP-binding protein Era [Lactobacillus gasseri MV-22] gi|311065756|gb|EFQ46096.1| GTP-binding protein Era [Lactobacillus gasseri MV-22] Length = 302 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 113/296 (38%), Positives = 180/296 (60%), Gaps = 10/296 (3%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 +E KD+ +SG VAL+G N GKSTL+N VG KV+I++ + QTTR+ + GI ++ Sbjct: 1 MDEKKDY-----KSGFVALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDD 55 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEI 126 + QIVF+DTPGI K+ M + S+S + D+V +V+ K + I +LLK+I Sbjct: 56 QEQIVFIDTPGIHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKKI 115 Query: 127 AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K + L++NKID V P++LL + L + +SA++G+ +++ + L Sbjct: 116 KKP---VFLVINKIDKVHPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKYL 172 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQ 246 P P Y ADQ++D P + AE+ RE++ H+E+P+++ VV ++ + + G + I Sbjct: 173 PEGPQFYDADQLTDRPEYFIVAELIREQVLKLTHEEVPHATAVVVDRMRDHEGGKLQIEA 232 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 IYVERP QK I++GK GQ +K I + A++EI +L + V+L L+VKVQK+W DP Sbjct: 233 TIYVERPGQKGIIIGKKGQMLKQIGIAARQEIEALLGEKVNLRLWVKVQKNWRSDP 288 >gi|313884139|ref|ZP_07817905.1| ribosome biogenesis GTPase Era [Eremococcus coleocola ACS-139-V-Col8] gi|312620586|gb|EFR32009.1| ribosome biogenesis GTPase Era [Eremococcus coleocola ACS-139-V-Col8] Length = 301 Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 109/280 (38%), Positives = 170/280 (60%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VAL+G N GKSTL+N+ VG K++I++ K QTTR+ ++G+ ++ +SQ+VF+DTP Sbjct: 5 NFKSGFVALIGRPNVGKSTLLNKVVGQKIAIMSDKAQTTRNRIQGVYTDADSQVVFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI K + M++ ++S ++ AD VC+VV++ ++ +++ L L++N Sbjct: 65 GIHKPKHALGNFMLKTAYSALQGADAVCVVVNAAEKIGPGDRLVIERAKNVQVPLFLLIN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V PE++L+ E L + F +SA +G+ +++ L LP P Y ADQ+ Sbjct: 125 KIDLVSPEQVLQAIESYKDLADFAQVFPISALEGNNVPELVEGLKEVLPQGPQYYPADQV 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 D P + AE REK+ + +E+P+S V E +D I I VI VER SQK I Sbjct: 185 MDHPEYFVVAEFIREKVLILTREEVPHSVAVKVESMVRNEDDKIEIHAVIIVERASQKGI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK GQ IK I A+++I ++L V+L LFV+VQK W Sbjct: 245 IIGKQGQMIKKIGKMARRDIEKLLADKVYLDLFVQVQKSW 284 >gi|300361843|ref|ZP_07058020.1| GTP-binding protein Era [Lactobacillus gasseri JV-V03] gi|300354462|gb|EFJ70333.1| GTP-binding protein Era [Lactobacillus gasseri JV-V03] Length = 303 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 112/297 (37%), Positives = 180/297 (60%), Gaps = 10/297 (3%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 +E KD+ +SG VAL+G N GKSTL+N VG KV+I++ + QTTR+ + GI ++ Sbjct: 1 MMDEKKDY-----KSGFVALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTD 55 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 + QIVF+DTPG+ K+ M + S+S + D+V +V+ K + I +LLK+ Sbjct: 56 DQEQIVFIDTPGVHKPKNKLDDFMDKSSYSALDEVDVVLFMVEPEPAGKGDQYIAELLKK 115 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I K + L++NKID V P++LL + L + +SA++G+ +++ + Sbjct: 116 IKKP---VFLVINKIDKVHPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKY 172 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 LP P Y ADQ++D P + AE+ RE++ H+E+P+++ VV ++ + + G + I Sbjct: 173 LPEGPQFYDADQLTDRPEYFIVAELIREQVLKLTHEEVPHATAVVVDRMRDHEGGKLQIE 232 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 IYVERP QK I++GK GQ +K I + A++EI +L + V+L L+VKVQK+W DP Sbjct: 233 ATIYVERPGQKGIIIGKKGQMLKQIGIAARQEIEALLGEKVNLRLWVKVQKNWRSDP 289 >gi|323700011|ref|ZP_08111923.1| GTP-binding protein Era [Desulfovibrio sp. ND132] gi|323459943|gb|EGB15808.1| GTP-binding protein Era [Desulfovibrio desulfuricans ND132] Length = 302 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 112/290 (38%), Positives = 184/290 (63%), Gaps = 12/290 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +AL+G NAGKSTL+N ++G KV+IV+ K QTTR+ + GI++ ++Q+VFLDTPG+ Sbjct: 5 GMIALIGPPNAGKSTLMNTYIGQKVAIVSPKPQTTRNRISGILTTDDAQLVFLDTPGVHR 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSRLILI 136 + ++ ++ +W+ + +D V ++VD+ + L I L+K + + +++ Sbjct: 65 LRGKMNRFLLESAWNALASSDAVVVLVDAALYCAKPQLLDKEIAPLVKPVGEAGRPVLVA 124 Query: 137 LNKIDCVKP-ERLLE-QAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NKID +K ++LL A +A ++ E F+ VSA K G D++L + + P P ++ Sbjct: 125 VNKIDRIKEKDQLLPFMARLAE--LWPEAEFVPVSALKAKGTDELLERILAHTPEGPQMF 182 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVER 252 DQIS +P+ +EI REKLF L +E+PYS+ V E+W E+ ++ ++I VIY R Sbjct: 183 PEDQISTVPLRFMASEIIREKLFYSLRQELPYSTAVEIEQWDEDSREDMVVINAVIYTSR 242 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 PS K +++GK G N+K I +A++EIAE++ Q VHL L+VKV++ W DP Sbjct: 243 PSHKGMIIGKQGANLKAIGSQARQEIAELIGQKVHLELWVKVREGWTEDP 292 >gi|218887297|ref|YP_002436618.1| GTP-binding protein Era [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226741205|sp|B8DQN1|ERA_DESVM RecName: Full=GTPase Era gi|218758251|gb|ACL09150.1| GTP-binding protein Era [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 307 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 114/289 (39%), Positives = 183/289 (63%), Gaps = 8/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VAL+G NAGKSTL+N +G KV+IVT + QTTR+ + GI+SE ++Q++F+DTPGI Sbjct: 7 RCGWVALLGPPNAGKSTLLNSALGHKVAIVTPRAQTTRNQIVGILSEPDAQVIFMDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV------NIHDLLKEIAKRSSRLI 134 + +K++++ +W ++ AD++ +++D+ +K ++ L+ +A +I Sbjct: 67 HQQRGRMNKILLQTAWQSMHSADVILVMLDADLYIKKPDFLENDVKPLMDAVAAEERPVI 126 Query: 135 LILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 + +NK+D + + ++L KL + F VSA K G +++ + S LP+AP +Y Sbjct: 127 VAVNKVDLFRDKSKMLPLFIELQKLWPKAEVFPVSALKRDGLPELVKLVKSKLPVAPALY 186 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 DQ+S LP+ AEI REKLFL L +E+PYS V EKW+E++ ++ I VIYV R Sbjct: 187 PEDQLSTLPVRFMAAEIVREKLFLALRQELPYSVAVEIEKWDEEEGRDLVTIHAVIYVGR 246 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 PS K +++GK G IK I +A+ +I ++LE+ VHL L+VKV++ W D Sbjct: 247 PSHKSMVIGKAGATIKDIGTKARVDIQDLLEKKVHLELWVKVREGWTED 295 >gi|317154877|ref|YP_004122925.1| GTP-binding protein Era [Desulfovibrio aespoeensis Aspo-2] gi|316945128|gb|ADU64179.1| GTP-binding protein Era [Desulfovibrio aespoeensis Aspo-2] Length = 302 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 175/292 (59%), Gaps = 16/292 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VAL+G NAGKSTL+N+ +G KV+IV+ + QTTR+ + GI+S E+Q+VFLDTPGI Sbjct: 5 GTVALIGPPNAGKSTLMNQLLGQKVAIVSPRPQTTRNRISGILSTDEAQVVFLDTPGIHQ 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSRLILI 136 + ++ ++ +WS + AD+V +++D+ + I L+K +A+ +++ Sbjct: 65 LRGKMNRFLLEAAWSALAGADVVVVLLDASLYAAKPYMMDKEIKPLVKPVAETGRPVLVA 124 Query: 137 LNKIDCVKPER-----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +NKID +K + L AE+ FI VSA +G G D +L + +P P Sbjct: 125 VNKIDRIKDKAGMLPVLARAAELWPAAEFIP----VSALRGQGTDVLLKRILDFIPEGPA 180 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-KKDGSILIRQVIYV 250 ++ DQIS P+ +EI REKLF L +E+PY++ V E W+E ++G +I VIY Sbjct: 181 MFPEDQISTAPVRFMASEIIREKLFYTLRQELPYTTAVEIEAWDETSREGMTVINAVIYT 240 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 + + K +++GK G N+K I EA+ EIAE+LE VHL L+VKV+ W DP Sbjct: 241 AQKNHKGMIIGKQGANLKKIGSEARLEIAELLETKVHLELWVKVRDGWTEDP 292 >gi|56416939|ref|YP_154013.1| GTP-binding protein Era [Anaplasma marginale str. St. Maries] gi|222475305|ref|YP_002563722.1| GTP-binding protein ERA (era) [Anaplasma marginale str. Florida] gi|254995121|ref|ZP_05277311.1| GTP-binding protein Era [Anaplasma marginale str. Mississippi] gi|56388171|gb|AAV86758.1| GTP-binding protein ERA [Anaplasma marginale str. St. Maries] gi|222419443|gb|ACM49466.1| GTP-binding protein ERA (era) [Anaplasma marginale str. Florida] Length = 297 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 117/288 (40%), Positives = 173/288 (60%), Gaps = 13/288 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D+ + VA+VGATNAGKSTL+N VG K SIVT KV TTR + + ++ Q+VF D Sbjct: 4 RDSEKCSLVAVVGATNAGKSTLINELVGFKASIVTPKVHTTRVRMNAVRNDGNVQLVFTD 63 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+F K K +++ +W +I+ AD+V LV+++ L + ++ + + + Sbjct: 64 TPGVFAPKTVLEKFLVKNAWMSIRGADVVVLVLEARNYLCSQVARVVATVKHSHIPAVAV 123 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEK------TFMVSATKGHGCDDVLNYLCSTLPLAP 190 LNK D LL++ I L ++ F +SA G G + +L +L + P Sbjct: 124 LNKTD------LLQECRIRGILAHVQSMHEFTGVFAISALHGLGTEALLTHLRESADYCP 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W+Y Q +D + F AEITREKLFL L +E+PYS VVTEK+E++ S++I+QV+YV Sbjct: 178 WLYPGTQRTDATVEFFVAEITREKLFLALRQELPYSLSVVTEKFEDRGR-SVIIKQVVYV 236 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + SQK I++GKN IK +S A++EI IL + HL LFVKV+K W Sbjct: 237 IKESQKTIVVGKNAALIKGVSTAAREEIERILGKKAHLFLFVKVRKFW 284 >gi|303246793|ref|ZP_07333070.1| GTP-binding protein Era [Desulfovibrio fructosovorans JJ] gi|302491810|gb|EFL51690.1| GTP-binding protein Era [Desulfovibrio fructosovorans JJ] Length = 305 Score = 208 bits (529), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 113/289 (39%), Positives = 172/289 (59%), Gaps = 8/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G V ++G TNAGKSTL+NR +G KVSIV+ K QTTR+ + GI++E ++Q VFLDTPG+ Sbjct: 6 RFGHVVMLGPTNAGKSTLLNRVIGQKVSIVSPKPQTTRNSISGILTEGDAQAVFLDTPGL 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR------ELKVNIHDLLKEIAKRSSRLI 134 K L++R +++ + AD+V +++D R L+ ++ +++ + + ++ Sbjct: 66 HRQKRGIAPLLLRSAYAALGQADVVLVLLDGARYARDPDALRADLRPVVQALTNAKTPVV 125 Query: 135 LILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 + LNK D V+ + R+L + + + F VSA G G ++L L + LP P Y Sbjct: 126 VALNKSDAVRDKARMLPVLAAIGEALPGAELFPVSALTGQGVAELLTALFARLPEGPHQY 185 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVER 252 D+IS P+ EI REKLFL L +E+PYS+ V E W+EK K G + I I V R Sbjct: 186 DPDEISTAPVRFLAGEIVREKLFLALGEELPYSTAVTVENWDEKSKPGLVKILATILVGR 245 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K +++GK G+ IK I +A+ EI E++ V L L+VKV+ DW D Sbjct: 246 ESHKPMVIGKGGERIKDIGAKARAEIEEMIGSQVFLELWVKVRPDWAAD 294 >gi|91201100|emb|CAJ74159.1| strongly similar to GTP-binding protein Era [Candidatus Kuenenia stuttgartiensis] Length = 301 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 115/295 (38%), Positives = 181/295 (61%), Gaps = 7/295 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F KDF RSG VA++G N GKSTL+N ++G K+SIVTHK QTTR + GI+++ Sbjct: 3 FMQNKKDF-----RSGYVAVIGEPNVGKSTLINNYMGCKLSIVTHKPQTTRKKIMGILTK 57 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH-DLLKEI 126 ++ QI+F DTPGI K M++ ++S IK ADI+ ++V+ ++ IH D++K++ Sbjct: 58 EDYQIIFFDTPGIIEPTYELQKYMVKTAYSVIKEADILLMMVEPFKQ-PAKIHRDVVKKL 116 Query: 127 AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 A + ++L++NK+D V+ ++LL N L+ + +SA +G + +L+ + L Sbjct: 117 ATFNKPILLVINKVDMVEKDKLLPIIASYNTLMKFSEIIPISAKEGTNLERLLSLIVQYL 176 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQ 246 P +Y D I+D AEI REK+F +EIPYSS V E+++E++ G I+ Sbjct: 177 PEGEPLYPEDSITDYNERFLAAEIIREKVFEFYGEEIPYSSTVEIEEFKEREKGRDYIKA 236 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +IYVER SQK I++G+ G+ IK + + A+K+I + L + V L L VKV + W D Sbjct: 237 IIYVERKSQKGIIIGEEGKAIKHVGVIARKDIEDQLGREVFLELHVKVMEKWRKD 291 >gi|239909250|ref|YP_002955992.1| GTP-binding protein Era homolog [Desulfovibrio magneticus RS-1] gi|239799117|dbj|BAH78106.1| GTP-binding protein Era homolog [Desulfovibrio magneticus RS-1] Length = 305 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 112/294 (38%), Positives = 177/294 (60%), Gaps = 8/294 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++ SR G V ++G TNAGKSTL+NR +G K+SIV+ K QTTR+ + GI+++ + Q VFL Sbjct: 1 MENVSRFGHVVMLGPTNAGKSTLLNRLIGQKISIVSPKPQTTRNSISGIITQGDLQAVFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR------ELKVNIHDLLKEIAKR 129 DTPG+ K L++R +++ + AD+V L++D+ + L ++ ++K + Sbjct: 61 DTPGLHRQKRGIAPLLLRSAYAALGQADVVLLILDAAQYARRLDGLAPDLRPIVKAVGDG 120 Query: 130 SSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +++ LNK D V+ + RLL ++ + + F +SA G G DD+L L S LP Sbjct: 121 RLPVLIALNKADVVREKARLLPVLAAVSEALPAAELFPISALTGLGVDDLLTALMSRLPE 180 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQV 247 + D++S P+ AEI REKLFL L +E+PYS+ V E W+E+ K G IR Sbjct: 181 GAHQFDPDEVSTAPVRFLAAEIVREKLFLALGEELPYSTAVTIEDWDERSKPGLTKIRAA 240 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I+V R S K +++GK G+ +K + +A+ +I E+L V L L+VKV+ DW D Sbjct: 241 IHVARESHKPMVIGKGGERLKDVGQKARADIEEMLGGQVFLELWVKVRPDWTDD 294 >gi|259500586|ref|ZP_05743488.1| GTP-binding protein Era [Lactobacillus iners DSM 13335] gi|302191277|ref|ZP_07267531.1| GTP-binding protein Era [Lactobacillus iners AB-1] gi|309805224|ref|ZP_07699276.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 09V1-c] gi|309810245|ref|ZP_07704090.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 2503V10-D] gi|312871783|ref|ZP_07731871.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 3008A-a] gi|312872928|ref|ZP_07732988.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2062A-h1] gi|312874162|ref|ZP_07734196.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2052A-d] gi|312875582|ref|ZP_07735583.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2053A-b] gi|315653578|ref|ZP_07906498.1| GTP-binding protein Era [Lactobacillus iners ATCC 55195] gi|325912100|ref|ZP_08174498.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 143-D] gi|325912581|ref|ZP_08174964.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 60-B] gi|329920169|ref|ZP_08277000.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 1401G] gi|259167970|gb|EEW52465.1| GTP-binding protein Era [Lactobacillus iners DSM 13335] gi|308165458|gb|EFO67689.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 09V1-c] gi|308169517|gb|EFO71565.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 2503V10-D] gi|311088836|gb|EFQ47279.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2053A-b] gi|311090232|gb|EFQ48642.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2052A-d] gi|311091450|gb|EFQ49834.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2062A-h1] gi|311092725|gb|EFQ51081.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 3008A-a] gi|315488940|gb|EFU78582.1| GTP-binding protein Era [Lactobacillus iners ATCC 55195] gi|325476050|gb|EGC79218.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 143-D] gi|325478002|gb|EGC81131.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 60-B] gi|328936623|gb|EGG33067.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 1401G] Length = 300 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 111/284 (39%), Positives = 172/284 (60%), Gaps = 5/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+N VG KV+I++++ QTTR+ + GI + QI+F+DTPGI Sbjct: 7 KSGFVALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 K++ M + S+S + + V +VD K + I DLLK +A + LI+N Sbjct: 67 HKPKNNLDDFMDKSSYSALNDVEAVLFMVDPEPAGKGDMFIIDLLKNVA---CPVFLIIN 123 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V P++LL + NKLV + +SA +G+ DD++ L LP P Y ++Q+ Sbjct: 124 KIDTVHPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPQGPHYYDSEQL 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ H E+P+S+ V+ +K + G + I I+VE+ QK I Sbjct: 184 TDKPEYFIVAELIREQILQLTHAEVPHSAAVLVDKMSDFDKGKLQIFATIFVEKEGQKGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 ++GKNGQ +K I + ++ EI ++L V+L L++KV K+W DP Sbjct: 244 IIGKNGQMLKNIGMHSRVEIEKLLGDKVNLHLWIKVHKNWRSDP 287 >gi|229824094|ref|ZP_04450163.1| hypothetical protein GCWU000282_01398 [Catonella morbi ATCC 51271] gi|229786448|gb|EEP22562.1| hypothetical protein GCWU000282_01398 [Catonella morbi ATCC 51271] Length = 301 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 169/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+NRFVG K++I++ K QTTR+ ++G+++ ++QIVF+DTPGI Sbjct: 7 KSGFVAIIGRPNVGKSTLLNRFVGQKIAIMSDKAQTTRNRIQGVLTTDQAQIVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++S +K D V VV++ ++ +++ I + L++NKI Sbjct: 67 HKPKHALGDFMVNTAYSALKGVDAVLFVVNAAEKMGPGDRLIMERIQNVKVPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VKP+ LL E + ++ F +SAT+G+ +++ L LP P Y QI D Sbjct: 127 DLVKPDDLLPIIEGYQAVRSFDQVFPISATQGNNVPELVAKLQEALPEGPKYYPDSQIMD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + AE REK+ L +EIP+S V + + ++G I ++ I VER SQK I++ Sbjct: 187 HPEYFVVAEFIREKILLLTQEEIPHSVAVQVQSMQRNENGKIEVQASIIVERKSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G GQ IK I A+++I ++L+ V+L L+VKVQK+W Sbjct: 247 GAGGQMIKKIGQLARRDIEQLLDDKVYLDLWVKVQKNW 284 >gi|303326575|ref|ZP_07357018.1| GTP-binding protein Era [Desulfovibrio sp. 3_1_syn3] gi|302864491|gb|EFL87422.1| GTP-binding protein Era [Desulfovibrio sp. 3_1_syn3] Length = 307 Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 112/290 (38%), Positives = 173/290 (59%), Gaps = 8/290 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VAL+G NAGKSTL+N +G KV+IVT K QTTR+ + GI++++E+Q++F+DTPG+ Sbjct: 7 RCGWVALMGPPNAGKSTLLNALLGQKVTIVTPKPQTTRNQIVGILTDEEAQVIFMDTPGL 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSRLI 134 + K MI+ W ++ AD++ ++DSH L ++ + + +A +I Sbjct: 67 TQVRGRLSKTMIQAVWQSLGQADVIMPILDSHLYIRHPEFLDRDLAPVAEALASDERPMI 126 Query: 135 LILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +++NK+D + R+L N++ F SA + G ++ + S LP P + Sbjct: 127 VVVNKVDLFSDKSRMLPLLTRLNEMWPRADIFPTSALRRDGLPELKALIRSKLPEGPAQF 186 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVER 252 DQIS + AEI REKLFLHL +E+PY+ V E WEE ++ G +I VIYV R Sbjct: 187 PEDQISTASLRFMAAEIIREKLFLHLRQEVPYAVAVDVESWEEDEERGQTVIHAVIYVAR 246 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 P K +++G+ G +IK I EA+K+I E++ VHL L+VKV++ W DP Sbjct: 247 PMHKAMVIGRAGASIKQIGSEARKDIQELVGGKVHLELWVKVREHWTEDP 296 >gi|309803256|ref|ZP_07697353.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 11V1-d] gi|309807561|ref|ZP_07701513.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 01V1-a] gi|308164764|gb|EFO67014.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 11V1-d] gi|308169167|gb|EFO71233.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 01V1-a] Length = 300 Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 111/284 (39%), Positives = 172/284 (60%), Gaps = 5/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+N VG KV+I++++ QTTR+ + GI + QI+F+DTPGI Sbjct: 7 KSGFVALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 K++ M + S+S + + V +VD K + I DLLK +A + LI+N Sbjct: 67 HKPKNNLDDFMDKSSYSALNDVEAVLFMVDPEPAGKGDMFIIDLLKNVA---CPVFLIIN 123 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V P++LL + NKLV + +SA +G+ DD++ L LP P Y ++Q+ Sbjct: 124 KIDTVHPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPEGPHYYDSEQL 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ H E+P+S+ V+ +K + G + I I+VE+ QK I Sbjct: 184 TDKPEYFIVAELIREQILQLTHAEVPHSAAVLVDKMSDFDKGKLQIFATIFVEKEGQKGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 ++GKNGQ +K I + ++ EI ++L V+L L++KV K+W DP Sbjct: 244 IIGKNGQMLKNIGMHSRVEIEKLLGDKVNLHLWIKVHKNWRSDP 287 >gi|199599319|ref|ZP_03212717.1| GTPase [Lactobacillus rhamnosus HN001] gi|258508545|ref|YP_003171296.1| GTP-binding protein era [Lactobacillus rhamnosus GG] gi|199589758|gb|EDY97866.1| GTPase [Lactobacillus rhamnosus HN001] gi|257148472|emb|CAR87445.1| GTP-binding protein era [Lactobacillus rhamnosus GG] gi|259649852|dbj|BAI42014.1| GTP-binding protein Era [Lactobacillus rhamnosus GG] Length = 300 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 104/277 (37%), Positives = 166/277 (59%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA++G N GKST +NR +G K++I++ K QTTR+ + GI + ++QIVF+DTPGI Sbjct: 6 SGFVAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIH 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ M + + ST+ D + +V + + +L+++A+ + LILNKID Sbjct: 66 KPKNELDDYMDKAALSTLNQVDAILFMVAADEQKGAGDAYILRQLAEVKKPVYLILNKID 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 VKP+ LL E + F +SAT G+ D++LN L +TLP P Y DQ++D Sbjct: 126 LVKPDDLLPLIESYQHDYHFAQVFPISATMGNNVDELLNSLTATLPEGPQYYPEDQLTDH 185 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P + E+ REK+ E+P++ V E+ ++++ G + I I VER SQK I++G Sbjct: 186 PEYFVVGELIREKILELTRDEVPHAVAVQVERMKDREGGKLQIEAYIIVERDSQKGIIIG 245 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + GQ +K I + A+++I +L V+L L+V+VQK+W Sbjct: 246 RGGQMLKQIGIRARRDIENLLGDKVNLKLWVRVQKNW 282 >gi|225850199|ref|YP_002730433.1| GTP-binding protein Era [Persephonella marina EX-H1] gi|225646733|gb|ACO04919.1| GTP-binding protein Era [Persephonella marina EX-H1] Length = 305 Score = 205 bits (521), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 182/299 (60%), Gaps = 13/299 (4%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 E K+F R+G VAL+G N GKST++N +G K+SIV+ K QTTR + G+ K Sbjct: 1 MTEEKEF-----RAGFVALIGRPNVGKSTIMNNILGTKLSIVSPKPQTTRMRILGVKHNK 55 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IA 127 ++QI+FLDTPGI KD K ++ + S+++ AD++ +++++ + LL I Sbjct: 56 DAQIIFLDTPGIQKGKDLLTKTVVESAVSSMEEADVLVMIIEADKGWTKEDEQLLHNYIE 115 Query: 128 KRSSRLILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 K + IL++NKID +K +RLL E A K F+E VSA KG DD + L Sbjct: 116 KLNKPTILVINKIDKMKDKRLLLPLIEESAKKYNFVE-IIPVSAIKGQNLDDFVQTLKKY 174 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE---KKDGSI 242 LP +P ++ DQI+DLP+ + AEI REK+F + KEIPYS+ V E EE KKD + Sbjct: 175 LPPSPPLFPEDQITDLPIKFYIAEIIREKVFQNTKKEIPYSAAVEVESIEEGKVKKD-LL 233 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +IR IYVE+ + K I++GK GQ +K I EA++E+ +L + +HL L+VKV+ W D Sbjct: 234 IIRANIYVEKENHKAIIIGKKGQMLKKIGKEAREELEHLLGKKIHLELWVKVKPRWKED 292 >gi|104774144|ref|YP_619124.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514234|ref|YP_813140.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275034|sp|Q04A20|ERA_LACDB RecName: Full=GTPase Era gi|122983938|sp|Q1G9W6|ERA_LACDA RecName: Full=GTPase Era gi|103423225|emb|CAI98053.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093549|gb|ABJ58702.1| GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125924|gb|ADY85254.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 301 Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 108/284 (38%), Positives = 173/284 (60%), Gaps = 5/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+NR +G KV+I + K QTTR+ + GI +E + Q+VF+DTPGI Sbjct: 8 KSGFVALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVVFVDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 F + + M + S S++K D+V +VD+ K + LLK++ + L++N Sbjct: 68 FKSHSDLDEYMDKASLSSLKDVDLVMFMVDAKEAGKGEEYVAGLLKDL---DIPVFLVIN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V P LL + + + +SA +G+G DD+L L LP P Y++D+I Sbjct: 125 KIDQVHPNELLPIIDSYQAVGKFAEFLPISARQGNGVDDLLKTLKDYLPEGPQYYASDEI 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ +E+P+S+ V ++ ++ +G + I I+VE+ QK+I Sbjct: 185 TDRPEYFVVAEMIREQILRLTDQEVPHSTAVWVDQMNQRINGKLQIDATIFVEKDGQKRI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 ++G+ G IK I + ++KEI +L + V+L L+VKV++DW DP Sbjct: 245 IIGQRGSMIKQIGMRSRKEIENLLGEKVNLKLWVKVRRDWRQDP 288 >gi|229552355|ref|ZP_04441080.1| GTP-binding protein Era [Lactobacillus rhamnosus LMS2-1] gi|258539726|ref|YP_003174225.1| GTP-binding protein era [Lactobacillus rhamnosus Lc 705] gi|229314337|gb|EEN80310.1| GTP-binding protein Era [Lactobacillus rhamnosus LMS2-1] gi|257151402|emb|CAR90374.1| GTP-binding protein era [Lactobacillus rhamnosus Lc 705] Length = 300 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 104/277 (37%), Positives = 165/277 (59%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA++G N GKST +NR +G K++I++ K QTTR+ + GI + ++QIVF+DTPGI Sbjct: 6 SGFVAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIH 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ M + + ST+ D + +V + + +L+++A+ + LILNKID Sbjct: 66 KPKNELDDYMDKAALSTLNQVDAILFMVAADEQKGAGDAYILRQLAEVKKPVYLILNKID 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 VKP+ LL E + F +SAT G+ D++LN L TLP P Y DQ++D Sbjct: 126 LVKPDDLLPLIESYQHDYHFAQVFPISATMGNSVDELLNSLTGTLPEGPQYYPEDQLTDH 185 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P + E+ REK+ E+P++ V E+ ++++ G + I I VER SQK I++G Sbjct: 186 PEYFVVGELIREKILELTRDEVPHAVAVQVERMKDREGGKLQIEAYIIVERDSQKGIIIG 245 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + GQ +K I + A+++I +L V+L L+V+VQK+W Sbjct: 246 RGGQMLKQIGIRARRDIENLLGDKVNLKLWVRVQKNW 282 >gi|309806580|ref|ZP_07700577.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 03V1-b] gi|308167000|gb|EFO69182.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 03V1-b] Length = 300 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 110/284 (38%), Positives = 171/284 (60%), Gaps = 5/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+N VG KV+I++++ QTTR+ + GI + QI+F+DTPGI Sbjct: 7 KSGFVALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 K++ M + S+S + + V +VD + I DLLK +A + LI+N Sbjct: 67 HKPKNNLDDFMDKSSYSALNDVEAVLFMVDPEPAGNGDMFIIDLLKNVA---CPVFLIIN 123 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V P++LL + NKLV + +SA +G+ DD++ L LP P Y ++Q+ Sbjct: 124 KIDTVHPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPQGPHYYDSEQL 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ H E+P+S+ V+ +K + G + I I+VE+ QK I Sbjct: 184 TDKPEYFIVAELIREQILQLTHAEVPHSAAVLVDKMSDFDKGKLQIFATIFVEKEGQKGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 ++GKNGQ +K I + ++ EI ++L V+L L++KV K+W DP Sbjct: 244 IIGKNGQMLKNIGMHSRVEIEKLLGDKVNLHLWIKVHKNWRSDP 287 >gi|148265178|ref|YP_001231884.1| GTP-binding protein Era [Geobacter uraniireducens Rf4] gi|259645947|sp|A5G693|ERA_GEOUR RecName: Full=GTPase Era gi|146398678|gb|ABQ27311.1| GTP-binding protein Era [Geobacter uraniireducens Rf4] Length = 297 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 108/285 (37%), Positives = 171/285 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+++G N GKSTL+NR +G K+ I + K QTTR+ ++GI + Q+VF+DTPGI Sbjct: 7 RSGFVSIIGRPNVGKSTLLNRILGDKIVITSDKPQTTRNRIQGIHNLPGCQMVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK +K M+ ++ S+IK D++ +V++ + +L+ +A + ++L++NKI Sbjct: 67 HRAKSKLNKYMVDVALSSIKEVDVILFLVEADAKPANQEGMILELLANADAPVLLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E LLE+ L + VSA G G + ++ + +P P + D ++D Sbjct: 127 DLVAKEALLERIAAYAALYPFREIVPVSALSGDGVERLVEVVHGFIPAGPPYFPDDILTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 LP AE+ REK+F H E+PYS VV E ++E+ DG + I I VER SQK I++ Sbjct: 187 LPERFIVAEMIREKIFRLTHDEVPYSVAVVVESFKERADGLVSIAAAINVERESQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 GK G+ +K I ++A++EI E+L+ V L LFV+V K+W + + Sbjct: 247 GKKGEMLKRIGMQARREIEELLDTKVFLELFVRVSKEWSENTRML 291 >gi|300812180|ref|ZP_07092622.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123894|ref|YP_004034153.1| GTP-binding protein era-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300496816|gb|EFK31896.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280457|gb|ADQ61176.1| GTP-binding protein era-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325686031|gb|EGD28089.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 301 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 107/284 (37%), Positives = 173/284 (60%), Gaps = 5/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+NR +G KV+I + K QTTR+ + GI +E + Q+VF+DTPGI Sbjct: 8 KSGFVALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVVFVDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 F + + M + S S++K D+V +VD+ K + LLK++ + L++N Sbjct: 68 FKSHSDLDEYMDKASLSSLKDVDLVMFMVDAKEAGKGEEYVAGLLKDL---DIPVFLVIN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V P LL + + + +SA +G+G DD+L L LP P Y++D++ Sbjct: 125 KIDQVHPNDLLPIIDSYQAVGKFAEFLPISARQGNGVDDLLKTLKDYLPEGPQYYASDEV 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ +E+P+S+ V ++ ++ +G + I I+VE+ QK+I Sbjct: 185 TDRPEYFVVAEMIREQILRLTDQEVPHSTAVWVDQMNQRINGKLQIDATIFVEKDGQKRI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 ++G+ G IK I + ++KEI +L + V+L L+VKV++DW DP Sbjct: 245 IIGQRGSMIKQIGMRSRKEIENLLGEKVNLKLWVKVRRDWRQDP 288 >gi|220903650|ref|YP_002478962.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254783652|sp|B8J3P9|ERA_DESDA RecName: Full=GTPase Era gi|219867949|gb|ACL48284.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 307 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 8/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VAL+G NAGKSTL+N +G KV+IVT K QTTR+ + GI+++ ++Q +F+DTPG+ Sbjct: 7 RCGWVALMGPPNAGKSTLLNALLGQKVTIVTPKPQTTRNQIVGILTDDDAQTIFMDTPGL 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSRLI 134 + K MI+ W ++ ADI+ V+D+H L ++ + + +A +I Sbjct: 67 TQVRGRLSKTMIQAVWQSLNQADIIMPVLDAHLYIRHPEFLDRDLAPVAQALASEERPMI 126 Query: 135 LILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +++NK+D + R+L +++ F +SA G D++ + LP + Sbjct: 127 VVVNKVDLFGDKSRMLPLLTRLHEMWPRADIFPISALHKDGLADLVELIRKKLPKGQAQF 186 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVER 252 DQIS P+ TAEI REKLF+HL +E+PYS V E WEE ++ G +I IYV R Sbjct: 187 PEDQISTAPLRFMTAEIVREKLFMHLRQEVPYSVAVDVESWEEDEERGQTVIHATIYVAR 246 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 P K +++G+ GQ+IK I EA+K+I E++ VHL L+VKV++ W D Sbjct: 247 PMHKAMVIGRAGQSIKAIGTEARKDIQELVGGKVHLELWVKVREHWTED 295 >gi|301066560|ref|YP_003788583.1| GTPase [Lactobacillus casei str. Zhang] gi|300438967|gb|ADK18733.1| GTPase [Lactobacillus casei str. Zhang] Length = 300 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 165/277 (59%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA++G N GKST VNR +G K++I++ K QTTR+ + GI + ++QIVF+DTPGI Sbjct: 6 SGFVAIIGRPNVGKSTFVNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIH 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ M + + ST+ D + +V++ E +++++A+ + LI+NKID Sbjct: 66 KPKNELDTYMDKAALSTLNQVDAILFMVEADEEKGPGDGYIMRQLAEVKKPVYLIINKID 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 VKP+ LL E + F +SAT G+ D++L L LP+ P Y DQ++D Sbjct: 126 LVKPDDLLPLIESYQHDYAFAQVFPISATMGNNVDELLTALTDALPVGPQYYPEDQLTDH 185 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P + E+ REK+ E+P++ V E+ ++++ G + I I VER SQK I++G Sbjct: 186 PEYFVVGELIREKILELTRDEVPHAVAVQVERMKDREGGKLQIEAYIIVERDSQKGIIIG 245 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + GQ +K I + A+++I +L V+L L+V+VQK+W Sbjct: 246 RGGQMLKQIGIRARRDIENLLGDKVNLKLWVRVQKNW 282 >gi|222055248|ref|YP_002537610.1| GTP-binding protein Era [Geobacter sp. FRC-32] gi|259645945|sp|B9M913|ERA_GEOSF RecName: Full=GTPase Era gi|221564537|gb|ACM20509.1| GTP-binding protein Era [Geobacter sp. FRC-32] Length = 297 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 106/280 (37%), Positives = 169/280 (60%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V+++G N GKSTL+N+ +G K+ I + K QTTR+ ++GI + QIVF+DTPGI Sbjct: 8 SGFVSIIGRPNVGKSTLLNKILGDKIVITSDKPQTTRNRIQGIHNLPGCQIVFIDTPGIH 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 AK +K M+ ++ S+IK D++ +V++ + +L +A + ++L++NK+D Sbjct: 68 RAKSRLNKYMVDVALSSIKEVDVILFLVEADTKPANQEETILGALASAEAPVVLVINKVD 127 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V E LLE+ + L + VSA G ++ + LP P + D ++D+ Sbjct: 128 LVAKESLLEKMAAYSGLYPFREVIPVSALTGDNTGRLVQVVRDLLPEGPPYFPDDILTDV 187 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P AEI REK+F H E+PYS VV E ++E+ DG ILI VI VER SQK I++G Sbjct: 188 PERFVVAEIVREKVFRLTHDEVPYSVAVVVESFKERDDGLILISAVINVERDSQKGIIIG 247 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + G+ +K I ++A++EI E+L+ + L LFV+V ++W + Sbjct: 248 RKGEMLKKIGMQARREIEELLDTRIFLELFVRVSREWSEN 287 >gi|238854658|ref|ZP_04644988.1| GTP-binding protein Era [Lactobacillus jensenii 269-3] gi|260664399|ref|ZP_05865251.1| GTP-binding protein Era [Lactobacillus jensenii SJ-7A-US] gi|282932951|ref|ZP_06338348.1| GTP-binding protein Era [Lactobacillus jensenii 208-1] gi|313472197|ref|ZP_07812689.1| GTP-binding protein Era [Lactobacillus jensenii 1153] gi|238832448|gb|EEQ24755.1| GTP-binding protein Era [Lactobacillus jensenii 269-3] gi|239529577|gb|EEQ68578.1| GTP-binding protein Era [Lactobacillus jensenii 1153] gi|260561464|gb|EEX27436.1| GTP-binding protein Era [Lactobacillus jensenii SJ-7A-US] gi|281302986|gb|EFA95191.1| GTP-binding protein Era [Lactobacillus jensenii 208-1] Length = 302 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 173/289 (59%), Gaps = 5/289 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N +G KV I ++K QTTR+ + GI + Q VF+DTPGI Sbjct: 8 KSGFVALIGRPNVGKSTLMNHLIGQKVVITSNKPQTTRNKISGIFTTDNLQAVFVDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 K+ M + S S++ D+V +V+ + K + I DLL +K + + LI+N Sbjct: 68 HKPKNKLDDYMDKASLSSLNDVDLVFFMVEPEKVGKGDEYIADLL---SKVKAPVFLIIN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V P+ LL E KL + +SAT G+ +D+++ L LP P Y +D++ Sbjct: 125 KIDQVHPDALLPVIESYQKLGKFAEIVPISATNGNNMEDLISTLYKYLPEGPQFYGSDEV 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ +EIP+++ VV ++ E+ +G + + IYVER QKKI Sbjct: 185 TDRPEYFVVAELIREQILRLTQQEIPHATAVVVDRMNERINGKLQVEATIYVERDGQKKI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 ++G+ G +K I ++++K+I +L + ++L L+VKVQK+W DP Q Sbjct: 245 IIGRGGSMLKKIGIQSRKQIESLLGEKINLHLWVKVQKNWRTDPSFLKQ 293 >gi|78358630|ref|YP_390079.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221035|gb|ABB40384.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 308 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 108/286 (37%), Positives = 178/286 (62%), Gaps = 8/286 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VAL+G NAGKST++N +G KV+IVT K QTTR+ + GI+++ ++Q+VF+DTPGI Sbjct: 8 RCGWVALMGPPNAGKSTMMNSLLGQKVAIVTPKPQTTRNQIVGILTQPDAQVVFMDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE------LKVNIHDLLKEIAKRSSRLI 134 + ++L+++ +W ++ AD++ +V+DS+ L +I L++ I ++ Sbjct: 68 HQLRGKMNRLLLQAAWQSMDGADVIMVVLDSNLYVRKPDFLDNDIEPLIEVIRHEKRPVV 127 Query: 135 LILNKIDC-VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 + LNK+D R+L E ++ + F VSA G +L ++ LP+A V+ Sbjct: 128 VALNKVDMFADKSRMLPLLEKLAEMWPAAEIFPVSALNDDGLRQMLAFIKGHLPVADPVF 187 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-KKDGSILIRQVIYVER 252 DQ+S P+ AEI REKLFL L +E+PY+S V EKWE+ +++G ++I VI+V R Sbjct: 188 PDDQVSTAPLRFMAAEIIREKLFLELRQELPYNSAVSVEKWEDLEEEGRVVIHAVIHVAR 247 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + K +++G+ GQ +K I +A+KEI ++++ V L L+V+V DW Sbjct: 248 KNHKGMVIGRQGQTLKKIGTDARKEIEALVDRKVFLDLWVRVTDDW 293 >gi|239631408|ref|ZP_04674439.1| GTPase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525873|gb|EEQ64874.1| GTPase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 300 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 165/277 (59%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA++G N GKST +NR +G K++I++ K QTTR+ + GI + ++QIVF+DTPGI Sbjct: 6 SGFVAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIH 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ M + + ST+ D + +V++ E +++++A+ + LI+NKID Sbjct: 66 KPKNELDTYMDKAALSTLNQVDAILFMVEADEEKGPGDGYIMRQLAEVKKPVYLIINKID 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 VKP+ LL E + F +SAT G+ D++L L LP+ P Y DQ++D Sbjct: 126 LVKPDDLLPLIESYQHDYAFAQVFPISATMGNNVDELLTALTDALPVGPQYYPEDQLTDH 185 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P + E+ REK+ E+P++ V E+ ++++ G + I I VER SQK I++G Sbjct: 186 PEYFVVGELIREKILELTRDEVPHAVAVQVERMKDREGGKLQIEAYIIVERDSQKGIIIG 245 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + GQ +K I + A+++I +L V+L L+V+VQK+W Sbjct: 246 RGGQMLKQIGIRARRDIENLLGDKVNLKLWVRVQKNW 282 >gi|308274308|emb|CBX30907.1| GTP-binding protein era homolog [uncultured Desulfobacterium sp.] Length = 303 Score = 201 bits (512), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 112/288 (38%), Positives = 171/288 (59%), Gaps = 1/288 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+ GA NAGKSTL+N+ +G K+SI + K QTTR+ + G+V SQ+VF+DTPGI Sbjct: 13 KSGYVAIAGAPNAGKSTLLNKLLGFKISITSKKPQTTRNKILGVVHRPLSQLVFIDTPGI 72 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F A ++ + ++ + ST DI+ +V D+ + L+K + + ++L LNKI Sbjct: 73 FKANNALNIKIVDAALSTFGDVDIILIVGDAANPDSKSESILIKNMESINKPVVLALNKI 132 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V +LLE K + VSA G +D+L L + LP P + D ++D Sbjct: 133 DIVDKSKLLEIIIQWEKRFDFKAVVPVSAKSAEGVEDLLCVLENILPPGPAFFPEDMLTD 192 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKIM 259 +P AE+ REK+F +EIPY+S V + + +KK+ G + I I++ER SQK I+ Sbjct: 193 VPERFVAAEMIREKIFRLTGQEIPYASAVTIDSFTDKKNKGLVAIEATIHIERDSQKGII 252 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GKNG +K I +EA++EI +++ + V L LFVKV KDW + + Q Sbjct: 253 IGKNGSKLKQIGIEARQEIEQLIGKKVFLQLFVKVDKDWSKNDRTLKQ 300 >gi|256851187|ref|ZP_05556576.1| GTP-binding protein Era [Lactobacillus jensenii 27-2-CHN] gi|260660611|ref|ZP_05861526.1| GTP-binding protein Era [Lactobacillus jensenii 115-3-CHN] gi|282934653|ref|ZP_06339896.1| GTP-binding protein Era [Lactobacillus jensenii 208-1] gi|297206052|ref|ZP_06923447.1| GTP-binding protein Era [Lactobacillus jensenii JV-V16] gi|256616249|gb|EEU21437.1| GTP-binding protein Era [Lactobacillus jensenii 27-2-CHN] gi|260548333|gb|EEX24308.1| GTP-binding protein Era [Lactobacillus jensenii 115-3-CHN] gi|281301228|gb|EFA93529.1| GTP-binding protein Era [Lactobacillus jensenii 208-1] gi|297149178|gb|EFH29476.1| GTP-binding protein Era [Lactobacillus jensenii JV-V16] Length = 302 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 108/289 (37%), Positives = 172/289 (59%), Gaps = 5/289 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N +G KV I ++K QTTR+ + GI + + Q VF+DTPGI Sbjct: 8 KSGFVALIGRPNVGKSTLMNHLIGQKVVITSNKSQTTRNKISGIFTTENLQAVFVDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 ++ M + S S++ D+V +V+ + K + I DLL +K + LI+N Sbjct: 68 HKPQNKLDDYMDKASLSSLNDVDLVFFMVEPEKVGKGDEYIADLL---SKVKVPIFLIIN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V P+ LL E KL + +SAT G+ +D++ L LP P Y +D++ Sbjct: 125 KIDQVHPDSLLPVIESYQKLGKFAEIVPISATNGNNMEDLVATLYKYLPEGPQFYGSDEV 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ +EIP+++ VV E+ ++ +G + + IYVER QKKI Sbjct: 185 TDRPEYFVVAELIREQILRLTQQEIPHATAVVVERMNQRINGKLQVEATIYVERDGQKKI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 ++GK G +K I ++++K++ +L + ++L L+VKVQK+W DP Q Sbjct: 245 IIGKGGSMLKKIGIQSRKQVEALLGEKINLHLWVKVQKNWRTDPSFLKQ 293 >gi|191638504|ref|YP_001987670.1| GTP-binding protein Era [Lactobacillus casei BL23] gi|226741221|sp|B3WEL1|ERA_LACCB RecName: Full=GTPase Era gi|190712806|emb|CAQ66812.1| GTP-binding protein era homolog [Lactobacillus casei BL23] gi|327382539|gb|AEA54015.1| GTP-binding protein Era [Lactobacillus casei LC2W] gi|327385736|gb|AEA57210.1| GTP-binding protein Era [Lactobacillus casei BD-II] Length = 300 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 164/277 (59%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA++G N GKST +NR +G K++I++ K QTTR+ + GI + ++QIVF+DTPGI Sbjct: 6 SGFVAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIH 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ M + + ST+ D + +V++ E +++++A+ + LI+NKID Sbjct: 66 KPKNELDTYMDKAALSTLNQVDAILFMVEADEEKGPGDGYIMRQLAEVKKPVYLIINKID 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 VKP+ LL E + F +SAT G+ D++L L LP+ P Y DQ++D Sbjct: 126 LVKPDDLLPLIESYQHDYAFAQVFPISATMGNNVDELLTALTDALPVGPQYYPEDQLTDH 185 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P + E+ REK+ E+P++ V E+ ++++ G + I I VER SQK I++G Sbjct: 186 PEYFVVGELIREKILELTRDEVPHAVAVQVERMKDREGGKLQIEAYIIVERDSQKGIIIG 245 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + GQ +K I + A+ +I +L V+L L+V+VQK+W Sbjct: 246 RGGQMLKQIGIRARHDIENLLGDKVNLKLWVRVQKNW 282 >gi|295695440|ref|YP_003588678.1| GTP-binding protein Era [Bacillus tusciae DSM 2912] gi|295411042|gb|ADG05534.1| GTP-binding protein Era [Bacillus tusciae DSM 2912] Length = 300 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 162/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG ALVG N GKSTL+NR +G K++I++ K QTTR+ +RG+++ + Q++FLDTPG+ Sbjct: 8 RSGFAALVGRPNVGKSTLLNRLIGTKIAIMSDKPQTTRNRIRGVLTRENGQVIFLDTPGV 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M RL+ +T++ D+V V+D + +L + + + L++NKI Sbjct: 68 HRPKHRLGDYMNRLALATLQEVDLVLFVIDVTSKFGPGEQVILDHLQGVETPVFLVINKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V PE LL + K + VSA KG D + + +TLP P Y ADQ++D Sbjct: 128 DLVSPEELLPMIDEHRKRYPFREVVPVSAVKGTNLDRLEERIFATLPQGPAYYPADQVTD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ RE++ +E+P+S V E+ +++G + IR V+ E+ SQK I++ Sbjct: 188 HPESFIVAELVREQVLNLTREEVPHSVAVTVEEITPRENGLLYIRAVVVTEKESQKAILI 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G+ G +K + A++EI +L V+L L+VKV+KDW Sbjct: 248 GREGGMLKRVGQRARREIEALLGSRVYLDLWVKVKKDW 285 >gi|58337483|ref|YP_194068.1| GTP-binding protein Era [Lactobacillus acidophilus NCFM] gi|81311455|sp|Q5FJT7|ERA_LACAC RecName: Full=GTPase Era gi|58254800|gb|AAV43037.1| GTP-binding protein [Lactobacillus acidophilus NCFM] Length = 301 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 180/299 (60%), Gaps = 10/299 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K+F +SG VALVG N GKSTL+N VG KV+I ++K QTTR+ + GI + Sbjct: 2 EEKEF-----KSGFVALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDRM 56 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK 128 Q++F+DTPGIF M + S S++ D+V +V+ K + I DLLKE+ Sbjct: 57 QVIFVDTPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEDMGKGDQYIADLLKEV-- 114 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + L++NK+D + P +LL + +KL ++ +SAT+G G DD+LN + LP Sbjct: 115 -KVPVFLVINKVDQIHPNKLLPIMDSYHKLDGFKEILPISATQGIGIDDLLNTIYKYLPA 173 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P Y ADQI+D P + AE+ RE++ +E+P+++ VV ++ + ++G ++I I Sbjct: 174 GPQYYDADQITDRPEYFVVAELIREQILRLTSQEVPHATAVVVDQMNKHQNGKLVIEATI 233 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 YVER QK I++GK G+ +K I ++++KEI +L + V+L L+VKVQ +W DP Q Sbjct: 234 YVERDGQKGIIIGKGGKMLKQIGIDSRKEIERLLGEKVNLRLWVKVQHNWRSDPSFLKQ 292 >gi|227904119|ref|ZP_04021924.1| GTP-binding protein Era [Lactobacillus acidophilus ATCC 4796] gi|227868138|gb|EEJ75559.1| GTP-binding protein Era [Lactobacillus acidophilus ATCC 4796] Length = 308 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 180/299 (60%), Gaps = 10/299 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K+F +SG VALVG N GKSTL+N VG KV+I ++K QTTR+ + GI + Sbjct: 9 EEKEF-----KSGFVALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDRM 63 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK 128 Q++F+DTPGIF M + S S++ D+V +V+ K + I DLLKE+ Sbjct: 64 QVIFVDTPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEDMGKGDQYIADLLKEV-- 121 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + L++NK+D + P +LL + +KL ++ +SAT+G G DD+LN + LP Sbjct: 122 -KVPVFLVINKVDQIHPNKLLPIMDSYHKLDGFKEILPISATQGIGIDDLLNTIYKYLPA 180 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P Y ADQI+D P + AE+ RE++ +E+P+++ VV ++ + ++G ++I I Sbjct: 181 GPQYYDADQITDRPEYFVVAELIREQILRLTSQEVPHATAVVVDQMNKHQNGKLVIEATI 240 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 YVER QK I++GK G+ +K I ++++KEI +L + V+L L+VKVQ +W DP Q Sbjct: 241 YVERDGQKGIIIGKGGKMLKQIGIDSRKEIERLLGEKVNLRLWVKVQHNWRSDPSFLKQ 299 >gi|282860195|ref|ZP_06269269.1| GTP-binding protein Era [Prevotella bivia JCVIHMP010] gi|282587016|gb|EFB92247.1| GTP-binding protein Era [Prevotella bivia JCVIHMP010] Length = 293 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 112/283 (39%), Positives = 169/283 (59%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG K+SI T K QTTR + GIV+ ++QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDAQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M++ S S + AD++ V D + + N+ D L+++AK +IL++NKI Sbjct: 63 LKPNYKMQEMMLQFSESALADADVLLYVTDVVEKPEKNM-DFLEKVAKMQIPVILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + ++L E E + L+ + +SA G D +L + LP +P + DQ++D Sbjct: 122 DESEQQKLGELVEKWHSLLPNAEILPISAQNKFGIDILLKRIYELLPESPAFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ + KEIPY+ VV E+++E D I I VIYVER SQK I++ Sbjct: 182 KPAKFFVSEIIREKILRYYDKEIPYAVEVVVERFKE-DDKQIHINAVIYVERSSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G GQ +K +S EA+K + ++ + L FVKV KDW + K Sbjct: 241 GHQGQALKKVSTEARKSLERFFDKKIFLETFVKVDKDWRNSQK 283 >gi|94987086|ref|YP_595019.1| GTP-binding protein Era [Lawsonia intracellularis PHE/MN1-00] gi|94731335|emb|CAJ54698.1| GTPase [Lawsonia intracellularis PHE/MN1-00] Length = 324 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 113/293 (38%), Positives = 174/293 (59%), Gaps = 12/293 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VAL+G NAGKSTL N FVG KV+IVT K QTTR+ + GI+++ + Q++FLDTPGI Sbjct: 17 RCGWVALIGPPNAGKSTLTNTFVGQKVAIVTSKPQTTRNKIGGILTQDDMQVIFLDTPGI 76 Query: 81 FNAKD----SYHKLMIRLSWSTIKHADIVCLVVDSHRELK------VNIHDLLKEIAKRS 130 + K+ KLM++ +W + AD + V+D LK +I ++ + + Sbjct: 77 CSEKNHVQGQLGKLMLQSAWQGLAIADSIVCVLDGGLYLKKPDLMDRDIEPFVEVLRQEV 136 Query: 131 SRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +++++NKID R+L + + F +SA +G D +L+ +C LP Sbjct: 137 RPIVIVVNKIDVFHDKSRMLPMLAKLGEYFPTAEIFPISARYKNGTDKLLDTICLKLPEG 196 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVI 248 ++ DQ+S +P+ AEI REKLF L++E+PY+ V EKW EE + ++I VI Sbjct: 197 EAIFPEDQLSTVPVRFMVAEIIREKLFEQLYQEVPYAVAVEVEKWDEESRKNQVVIYAVI 256 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 YV R S K +++G+ G+ IK+I A+KEI +L + VHL L+VKV++ W +D Sbjct: 257 YVARASHKAMVIGQAGERIKSIGTMARKEIKALLGKKVHLELWVKVRESWIND 309 >gi|317486347|ref|ZP_07945177.1| GTP-binding protein Era [Bilophila wadsworthia 3_1_6] gi|316922417|gb|EFV43673.1| GTP-binding protein Era [Bilophila wadsworthia 3_1_6] Length = 311 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 110/294 (37%), Positives = 179/294 (60%), Gaps = 12/294 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VAL+G NAGKSTL N VG KV+IVT K QTTR+ + GI+++K++Q++F+DTPG+ Sbjct: 6 RCGWVALMGPPNAGKSTLTNALVGQKVAIVTAKPQTTRNRIVGILTQKDAQVIFMDTPGV 65 Query: 81 F----NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK------VNIHDLLKEIAKRS 130 + K+M++ +W + A+ + LV+D L+ ++ L++ +A+ Sbjct: 66 HALRGQTRGQLGKIMVQSAWQSFAVANCIVLVIDGDLYLRKPDFMERDLAPLIQPLAEEE 125 Query: 131 SRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +++++NK+D + R+L E ++ + F SA + +G + +L + S LP Sbjct: 126 RPVVVVVNKVDLFHDKSRMLPLLESVAQMFPKAEIFPASALRRNGVEQLLELIRSHLPEG 185 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 + DQ+S PM AEI REKLF L++E+PYS V E W+E+ D +LI IY Sbjct: 186 EAQFPEDQLSTAPMKFMAAEIIREKLFEKLYQEVPYSVAVDVEVWDEEDD-RVLIHAAIY 244 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 V +PS K +++G+ G+ IK I A+KEI +++++ VHL L+VKV++DW DP+ Sbjct: 245 VAKPSHKAMVIGRAGEGIKAIGTAARKEIRDLVDKKVHLELWVKVREDWVDDPQ 298 >gi|256830504|ref|YP_003159232.1| GTP-binding protein Era [Desulfomicrobium baculatum DSM 4028] gi|256579680|gb|ACU90816.1| GTP-binding protein Era [Desulfomicrobium baculatum DSM 4028] Length = 305 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 110/290 (37%), Positives = 173/290 (59%), Gaps = 10/290 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G +ALVG NAGKST +N+ +G K++IV+ K QTTR+ + GI + E QI+FLDTPG+ Sbjct: 6 RAGFIALVGPPNAGKSTFLNKVLGEKIAIVSPKPQTTRTSITGIHTTAEEQIIFLDTPGV 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR------ELKVNIHDLLKEIAKRSSRLI 134 A+ ++ ++ +W ++ A+ V L +D R L+ ++ L I + Sbjct: 66 HTARGKLNRFLVDAAWGALQEANGVILFLDGSRYAGNEKALERDLRPLASRIGSLGVPMA 125 Query: 135 LILNKIDCVKP-ERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + LNK+D +KP ERLL A+ A + +E +SA G G D +L + LPL+P + Sbjct: 126 VALNKVDQIKPKERLLGLLADCAERWPGVE-LVPISARTGVGVDGLLAVVREFLPLSPAL 184 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVE 251 + DQ+S + +EI REKLFL L +E+PY+ V E WEE + ++ +I +IY Sbjct: 185 FPEDQLSTASVRFMASEIVREKLFLALDQELPYNVAVEIETWEELPEQNMTMIGAMIYTS 244 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + S K +++GK GQN+K I +A++E+ +L VHL L+VKV++ W D Sbjct: 245 KNSHKGMIVGKQGQNLKVIGQQARQELKALLGTKVHLELWVKVREGWTED 294 >gi|116494998|ref|YP_806732.1| GTP-binding protein Era [Lactobacillus casei ATCC 334] gi|122263585|sp|Q038T2|ERA_LACC3 RecName: Full=GTPase Era gi|116105148|gb|ABJ70290.1| GTPase [Lactobacillus casei ATCC 334] Length = 300 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 100/277 (36%), Positives = 164/277 (59%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA++G N GKST +NR +G K++I++ K QTTR+ + GI + ++QIVF+DTPGI Sbjct: 6 SGFVAIIGRPNVGKSTFMNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIH 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ M + + ST+ D + +V++ E +++++A+ + LI+NKID Sbjct: 66 KPKNELDTYMDKAALSTLNQVDAILFMVEADEEKGPGDGYIMRQLAEVKKPVYLIINKID 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 VKP+ LL E + F +SAT + D++L L LP+ P Y DQ++D Sbjct: 126 LVKPDDLLPLIESYQHDYAFAQVFPISATMENNVDELLTALTDALPVGPQYYPEDQLTDH 185 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P + E+ REK+ E+P++ V E+ ++++ G + I I VER SQK I++G Sbjct: 186 PEYFVVGELIREKILELTRDEVPHAVAVQVERMKDREGGKLQIEAYIIVERDSQKGIIIG 245 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + GQ +K I + A+++I +L V+L L+V+VQK+W Sbjct: 246 RGGQMLKQIGIRARRDIENLLGDKVNLKLWVRVQKNW 282 >gi|39997324|ref|NP_953275.1| GTP-binding protein Era [Geobacter sulfurreducens PCA] gi|39984215|gb|AAR35602.1| GTP-binding protein Era [Geobacter sulfurreducens PCA] gi|298506261|gb|ADI84984.1| GTP-binding protein Era [Geobacter sulfurreducens KN400] Length = 299 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 106/286 (37%), Positives = 169/286 (59%), Gaps = 1/286 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+++G N GKSTL+NR +G K+ I + K QTTR+ ++GI + +QIVF+DTPGI Sbjct: 8 RSGFVSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNLPGAQIVFIDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +A+ +K M+ + S+I+ D+V L+V+++R ++ + + + L++NKI Sbjct: 68 HHARSRLNKFMVEEALSSIREVDLVMLLVEANRAPGDQEREIAGLLPSVNVPVFLVVNKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ L E+ +L + VSA G + ++ + TLP P + D ++D Sbjct: 128 DLIDPDILAERLTAYAELFPFREVVPVSAETGENVERLVEVVRDTLPEGPVYFPDDILTD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 LP AEI REK+F EIPYS+ V + + E++DG ++ I I VER SQK I+ Sbjct: 188 LPERFIVAEIVREKVFRLTRDEIPYSTAVEVDSFREREDGGLVSISATITVERDSQKGII 247 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G+ G +K I EA+ EI +L+ V L LFV+V++DW +P Sbjct: 248 IGRKGAMLKQIGSEARLEIERLLDTKVFLELFVRVRRDWSENPNIL 293 >gi|322420694|ref|YP_004199917.1| GTP-binding protein Era [Geobacter sp. M18] gi|320127081|gb|ADW14641.1| GTP-binding protein Era [Geobacter sp. M18] Length = 297 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 104/285 (36%), Positives = 169/285 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V++VG N GKSTL+NR +G K+ I + K QTTR+ ++GI + QIVFLDTPGI Sbjct: 7 RSGFVSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNQIKGIHNVPGGQIVFLDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK +K M+ + S+++ D++ +VD + + + + ++ + +IL+LNKI Sbjct: 67 HRAKTRLNKFMVEEALSSVQGVDLILFLVDGAFDPEKEAEMIKEVLSGVDAPVILVLNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + LL + I + ++ VSA+ G G D ++ + LP P + D ++D Sbjct: 127 DLIPKGELLGRMAIYGETYPFKEIIPVSASTGDGVDQLVQLVHGLLPEGPCYFPDDILTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +P AEI REK+F H E+PYS VV + ++E+++G + I+ I VER SQK I++ Sbjct: 187 VPERFIVAEIIREKIFRLTHDEVPYSVAVVVDSFKERENGVVAIQATINVERDSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 G+ G +K I +A++EI ++L+ V L LFV+V +W + + Sbjct: 247 GRRGDMLKKIGTQARQEIEQLLDTKVFLELFVRVSGEWSDNSRML 291 >gi|327183708|gb|AEA32155.1| GTPase Era [Lactobacillus amylovorus GRL 1118] Length = 301 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 114/289 (39%), Positives = 177/289 (61%), Gaps = 5/289 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+N VG KV+I ++K QTTR+ + GI + + QIVF+DTPGI Sbjct: 7 KSGFVALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 F M + S S++ D+V +V+ + K + I DLLKE+ + L++N Sbjct: 67 FKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEKIGKGDQYIADLLKEV---KVPVFLVIN 123 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D + P +LL + +KL ++ +SAT+G G +D+L L LP P YSADQI Sbjct: 124 KVDQIHPNKLLPIMDSYHKLESFKEILPISATQGIGIEDLLATLNKYLPEGPQYYSADQI 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ +E+P+++ V ++ + ++G ++I IYVER QK I Sbjct: 184 TDRPEYFVVAELIREQILRLTSQEVPHATAVAVDQMNKHQNGKLVIEATIYVERDGQKGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 ++GK G+ +K I + ++KEI ++L + V+L L+VKVQ +W DP Q Sbjct: 244 IIGKGGKMLKQIGINSRKEIEDLLGEKVNLRLWVKVQHNWRSDPSFLKQ 292 >gi|325855172|ref|ZP_08171795.1| ribosome biogenesis GTPase Era [Prevotella denticola CRIS 18C-A] gi|325483909|gb|EGC86853.1| ribosome biogenesis GTPase Era [Prevotella denticola CRIS 18C-A] Length = 293 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 112/283 (39%), Positives = 167/283 (59%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG K+SI T K QTTR + GIV+ +SQIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDSQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M++ S S + AD++ V D + N+ D L+++AK + +IL++NKI Sbjct: 63 LKPNYKMQEMMLQFSESALADADVLLYVTDVVENPEKNM-DFLEKVAKMTIPVILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +L+E E + L+ + +SA G D ++ + LP +P + DQ++D Sbjct: 122 DESDQSKLVELVEKWHGLLPDAEILPISAKNKFGTDILMKRVRELLPESPAFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ + KEIPYS VV E+++E D I I VIYVER SQK I++ Sbjct: 182 KPARFFVSEIIREKILRYYDKEIPYSVEVVVERFKE-DDRQIHINAVIYVERSSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G +K +S EA+K + ++ + L FVKV KDW + K Sbjct: 241 GHQGMALKKMSTEARKSLERFFDKKIFLETFVKVDKDWRNSQK 283 >gi|315038512|ref|YP_004032080.1| GTP-binding protein Era [Lactobacillus amylovorus GRL 1112] gi|312276645|gb|ADQ59285.1| GTP-binding protein Era [Lactobacillus amylovorus GRL 1112] Length = 301 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 114/289 (39%), Positives = 177/289 (61%), Gaps = 5/289 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+N VG KV+I ++K QTTR+ + GI + + QIVF+DTPGI Sbjct: 7 KSGFVALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 F M + S S++ D+V +V+ + K + I DLLKE+ + L++N Sbjct: 67 FKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEKIGKGDQYIADLLKEV---KVPVFLVIN 123 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D + P +LL + +KL ++ +SAT+G G +D+L L LP P YSADQI Sbjct: 124 KVDQIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLATLNKYLPEGPQYYSADQI 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ +E+P+++ V ++ + ++G ++I IYVER QK I Sbjct: 184 TDRPEYFVVAELIREQILRLTSQEVPHATAVAVDQMNKHQNGKLVIEATIYVERDGQKGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 ++GK G+ +K I + ++KEI ++L + V+L L+VKVQ +W DP Q Sbjct: 244 IIGKGGKMLKQIGINSRKEIEDLLGEKVNLRLWVKVQHNWRSDPSFLKQ 292 >gi|325268711|ref|ZP_08135340.1| GTP-binding protein Era [Prevotella multiformis DSM 16608] gi|324988955|gb|EGC20909.1| GTP-binding protein Era [Prevotella multiformis DSM 16608] Length = 293 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 111/283 (39%), Positives = 168/283 (59%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG K+SI T K QTTR + GIV+ +++QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTEDAQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M++ S S + AD++ V D + N+ D L+++AK + +IL++NKI Sbjct: 63 LKPNYKMQEMMLQFSESALADADVLLYVTDVIENPEKNM-DFLEKVAKMTIPVILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +L+E E + L+ + +SA G D ++ + LP +P + DQ++D Sbjct: 122 DESDQSKLVELVEKWHSLLPDAEILPISAKNKFGTDILMKRVRELLPESPAFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ + KEIPYS VV E+++E D I I VIYVER SQK I++ Sbjct: 182 KPARFFVSEIIREKILRYYDKEIPYSVEVVVERFKE-DDRQIHINAVIYVERSSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G +K +S EA+K + ++ + L FVKV KDW + K Sbjct: 241 GHQGMALKKMSTEARKSLERFFDKKIFLETFVKVDKDWRNSQK 283 >gi|218132942|ref|ZP_03461746.1| hypothetical protein BACPEC_00803 [Bacteroides pectinophilus ATCC 43243] gi|217991815|gb|EEC57819.1| hypothetical protein BACPEC_00803 [Bacteroides pectinophilus ATCC 43243] Length = 322 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 108/280 (38%), Positives = 167/280 (59%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G N GKSTL+NR +G K++I ++K QTTR+ ++ + ++ QIVFLDTPGI Sbjct: 25 KSGFAAIIGRPNVGKSTLMNRIIGQKIAITSNKPQTTRNRIQTVYTDDRGQIVFLDTPGI 84 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ + TI D+V +V+ + +L++++K S ++L++NKI Sbjct: 85 HKAKNKLGEYMVGAAEKTIDEVDLVLWLVEPSSFIGAGDEHILEKLSKVKSPVVLVINKI 144 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K E +L AE NK+ F E +SA G G DD+++ + +P P Y D ++ Sbjct: 145 DTIKKEEVLPVIAEYKNKMDFAE-IVPISAYDGTGTDDLVDVIFKYMPYGPMFYDEDTVT 203 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D PM AEI REK L +E+P+ VV + +++K I I I ER S K I Sbjct: 204 DQPMRQIVAEIVREKALHALDEEVPHGIAVVIDSMKKRKGKKITDIDATIICERESHKGI 263 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+ EI ++LEQ V+L LFVKV+K+W Sbjct: 264 IIGKGGSMLKKIGTNARFEIEKLLEQKVNLKLFVKVKKEW 303 >gi|319892624|ref|YP_004149499.1| GTP-binding protein Era [Staphylococcus pseudintermedius HKU10-03] gi|317162320|gb|ADV05863.1| GTP-binding protein Era [Staphylococcus pseudintermedius HKU10-03] gi|323464338|gb|ADX76491.1| GTP-binding protein Era [Staphylococcus pseudintermedius ED99] Length = 298 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 102/278 (36%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKST VNR +G K++I++ K QTTR+ ++G+++++++QIVFLDTPGI Sbjct: 5 KSGFVTIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTQQDAQIVFLDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+ D V +V+ + E+ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMKVAKNTLSEIDAVMFMVNVNEEIGRGDEYIMEMLKTVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + + +SA +GH D +N L S LP P Y QISD Sbjct: 125 DLVHPDALMPRIEQYQRYMDFAEIIPISALEGHNVDHFINVLKSYLPEGPQYYPDGQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +EIP++ V E+ ++ + + I VIYVER SQK I++ Sbjct: 185 HPEQFVVSELIREKILQTTSEEIPHAIGVNVERMTQESEDRVHIEAVIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V+L L+VKVQKDW Sbjct: 245 GKGGKKLKEVGKRARLDIEHLLGSKVYLDLWVKVQKDW 282 >gi|325956928|ref|YP_004292340.1| GTPase Era [Lactobacillus acidophilus 30SC] gi|325333493|gb|ADZ07401.1| GTPase Era [Lactobacillus acidophilus 30SC] Length = 301 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 113/289 (39%), Positives = 177/289 (61%), Gaps = 5/289 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N VG KV+I ++K QTTR+ + GI + + QIVF+DTPGI Sbjct: 7 KSGFVALIGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 F M + S S++ D+V +V+ + K + I DLLKE+ + L++N Sbjct: 67 FKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEKIGKGDQYIADLLKEV---KVPVFLVIN 123 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D + P +LL + +KL ++ +SAT+G G +D+L L LP P YSADQI Sbjct: 124 KVDQIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLATLNKYLPEGPQYYSADQI 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ +E+P+++ V ++ + ++G ++I IYVER QK I Sbjct: 184 TDRPEYFVVAELIREQILRLTSQEVPHATAVAVDQMNKHQNGKLVIEATIYVERDGQKGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 ++GK G+ +K I + ++KEI ++L + V+L L+VKVQ +W DP Q Sbjct: 244 IIGKGGKMLKQIGINSRKEIEDLLGERVNLHLWVKVQHNWRSDPSFLKQ 292 >gi|323466383|gb|ADX70070.1| GTP-binding protein era-like protein [Lactobacillus helveticus H10] Length = 301 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 115/299 (38%), Positives = 181/299 (60%), Gaps = 10/299 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K+F +SG VALVG N GKSTL+N VG KV+I ++K QTTR+ + GI + + Sbjct: 2 EEKEF-----KSGFVALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKM 56 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK 128 Q+VF+DTPGIF M + S S++ D+V +V+S K + I +LLKE+ Sbjct: 57 QVVFVDTPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVESEEIGKGDQYIANLLKEV-- 114 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + L++NK+D + P +LL + +KL ++ +SAT+G G +D+LN + LP Sbjct: 115 -KVPVFLVINKVDQIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYLPE 173 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P Y ADQI+D P + AE+ RE++ + +E+P+++ V ++ + ++G +LI I Sbjct: 174 GPQYYGADQITDRPEYFVVAELIREQILRLISQEVPHATAVAVDQMNKHQNGKLLIEATI 233 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 YVE+ QK I++GK G+ +K I + ++KEI +L + V+L L+VKVQ +W DP Q Sbjct: 234 YVEKDGQKGIIIGKGGKMLKQIGINSRKEIEHLLGEKVNLRLWVKVQHNWRSDPSFLKQ 292 >gi|116748319|ref|YP_845006.1| GTP-binding protein Era [Syntrophobacter fumaroxidans MPOB] gi|116697383|gb|ABK16571.1| GTP-binding protein Era [Syntrophobacter fumaroxidans MPOB] Length = 307 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 111/287 (38%), Positives = 175/287 (60%), Gaps = 4/287 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+GA N GKSTL+NRF+ K+SI K QTTR+ + GI++E QIVF+DTPGI Sbjct: 10 KSGYVALIGAPNVGKSTLLNRFLREKISITAPKPQTTRNRILGILTEPGFQIVFMDTPGI 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNK 139 AKD ++++++ + +T+ AD VC +++ E I+D +L+ + + + +IL++NK Sbjct: 70 HRAKDRFNRVLVDTALATLGEADAVCFLIEIP-EPDPEINDYILENLGRIDTPVILVINK 128 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID + + RLL E VSA +G G D+++ L + L P Y D + Sbjct: 129 IDALADKSRLLPLIEKYRGRHSFHAVVPVSALQGEGTDELMTELVALLQEGPQYYPEDHL 188 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-KKDGSILIRQVIYVERPSQKK 257 +D AE+ REK+F H+E+PY+ V E++ E + I I V++VER SQK Sbjct: 189 TDQHERFLVAELIREKVFRLAHQEVPYAVAVSVERFAEIPEKNRIDIEAVVHVERESQKA 248 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I++GK GQ +K I +A+++I ++L V+L +FV+V K+W DP+ Sbjct: 249 IVIGKKGQMLKEIGRQAREDIEKLLGCHVYLGIFVRVTKNWRKDPRT 295 >gi|237756325|ref|ZP_04584877.1| GTP-binding protein Era [Sulfurihydrogenibium yellowstonense SS-5] gi|237691511|gb|EEP60567.1| GTP-binding protein Era [Sulfurihydrogenibium yellowstonense SS-5] Length = 307 Score = 195 bits (496), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 112/290 (38%), Positives = 179/290 (61%), Gaps = 9/290 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R+G VA+VG N GKSTL+N +G K+SIV+ + QTTR + G+ ++QI+FLDT Sbjct: 8 ENFRAGFVAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLDT 67 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRL 133 PG+ D K ++ S I+ AD++ +V+D+ +E K + + LK++ K + Sbjct: 68 PGVQKGGDLLTKSVMESVVSGIESADVILMVIDAEAGWTKEDKEIVENYLKKVNKPA--- 124 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 IL +NKID +K + +L E + K+ ++ +SA K D+++ + LP +P +Y Sbjct: 125 ILAINKIDKIKRDLVLPLIEESTKIYDFKEFVPISAIKNLNIDELIETIKKYLPESPPLY 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVE 251 DQI+DLP+ + AEI REK+FL+ +E+PYS V E K EK ++I VIYVE Sbjct: 185 PEDQITDLPLKFYIAEIIREKVFLNTRQEVPYSVAVEVESIKEGEKNKNLLIIDAVIYVE 244 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + + K I++GK GQ +K I ++A++E+ +L + VHL L+VKV++ W D Sbjct: 245 KENHKGIIIGKQGQMLKKIGMQAREELEFLLGKKVHLNLYVKVKERWKED 294 >gi|218781247|ref|YP_002432565.1| GTP-binding protein Era [Desulfatibacillum alkenivorans AK-01] gi|218762631|gb|ACL05097.1| GTP-binding protein Era [Desulfatibacillum alkenivorans AK-01] Length = 297 Score = 195 bits (496), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 169/289 (58%), Gaps = 1/289 (0%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N +SG + ++GA N GKSTL+N+ +G KVSI + K QTTR+ + G+V +++Q+V LDT Sbjct: 3 ENFKSGFIGMIGAPNVGKSTLLNQMLGEKVSITSSKPQTTRNRILGVVHREKAQLVMLDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI +AK +K M+ ++ + D++ VVD+ + + LK +AK+ +IL+L Sbjct: 63 PGIHSAKSPLNKHMVDVAMQCMGDVDLIMFVVDASKPDPNSERLALKGLAKQKMPVILVL 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID +K E LL L + VSA G ++++ L LP P + D Sbjct: 123 NKIDLIKKETLLPLIAKLEPLADFKAIVPVSAETGEQVEELIAILEEQLPQGPPFFPEDS 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVERPSQK 256 ++D+P AE+ REK+F +EIPYS V + + E++K + I VI+VER SQK Sbjct: 183 LTDMPERFVAAEMIREKVFRMTSQEIPYSVAVTLDSFTEQEKPPMVKISAVIHVERDSQK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G +K I A++EI ++ V L LFV+V+K+W D K Sbjct: 243 GIIIGKQGAMLKKIGTSARQEIERMVGVKVFLKLFVRVEKNWSTDTKAM 291 >gi|323703320|ref|ZP_08114970.1| GTP-binding protein Era [Desulfotomaculum nigrificans DSM 574] gi|323531683|gb|EGB21572.1| GTP-binding protein Era [Desulfotomaculum nigrificans DSM 574] Length = 302 Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 164/281 (58%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + RSG VALVG N GKSTL+N+ VG KV+I++ K QTTR + ++S ++QIVFLDT Sbjct: 6 EGYRSGFVALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLSRNDAQIVFLDT 65 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI + + M+ ++ +K D+V +V++ + +++ + + + L++ Sbjct: 66 PGIHKPRHKLGEYMVDVALGALKEVDVVLFLVEATGPPGAGDRYIAEQLKEIKTPVFLLI 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D VK E +LE+ L+ + VSA G D +++ + LP P Y AD Sbjct: 126 NKVDLVKKEEVLERIVSYKDLLDFAEVVPVSALAGENVDRLVDTIVQYLPEGPQYYPADM 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P AEI REK+ +E+P+S VV E+ + + +G + + VIY ER SQK Sbjct: 186 VTDRPERFIMAEIIREKVLHLTSEEVPHSVAVVVEQIQARSNGVVAVHAVIYTERESQKA 245 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K + A++EI +L V+L L+VKV+KDW Sbjct: 246 ILIGKGGNMLKEVGRRARQEIENLLGSKVYLELWVKVKKDW 286 >gi|332638283|ref|ZP_08417146.1| GTPase Era [Weissella cibaria KACC 11862] Length = 302 Score = 195 bits (495), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 165/285 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+N+ +G K++I++ K QTTR+ ++GI + E QIVF+DTPGI Sbjct: 7 KSGFVALVGRPNVGKSTLLNKMIGEKIAIMSPKAQTTRNKIQGIYTTDEGQIVFMDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +S M++ + S ++ AD+V +V++ ++ + + + LI+NKI Sbjct: 67 HKPHNSLGDFMVKTAMSALREADMVWFLVNADEPRGAGDDFIINRLKDTKTPVYLIINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P LL + + + + F +SA KG G ++L++ + P Y ADQI+D Sbjct: 127 DLVNPADLLTIIDDYRQQMEFAEIFPISALKGDGVPELLDFAMDKMAEGPQYYPADQITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +E+P+S VV +K E + + + ++ I VERP+QK I++ Sbjct: 187 HPERFIMSELIREKVLQLTRQEVPHSVAVVIDKIERQDENHLHVQATIVVERPTQKNIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 GK G IK I + A+K+I +L + L +VKV++ W P+ Sbjct: 247 GKQGAMIKEIGVRARKDIERLLGDKIFLETWVKVEERWRDKPQAL 291 >gi|94970562|ref|YP_592610.1| GTP-binding protein Era [Candidatus Koribacter versatilis Ellin345] gi|94552612|gb|ABF42536.1| GTP-binding protein Era [Candidatus Koribacter versatilis Ellin345] Length = 324 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 106/279 (37%), Positives = 169/279 (60%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPG 79 RSG V+++G NAGKSTL+N VG K++IVTHK QTTR+ ++GIV+ K+ QIV +DTPG Sbjct: 4 RSGFVSIIGRPNAGKSTLLNALVGEKIAIVTHKPQTTRNRIQGIVTVPKKGQIVLVDTPG 63 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + +K M++ + ++ D++ + D + + L + K ++L+LNK Sbjct: 64 VHKPDKTLNKRMMQEVYDALEGCDLLLYIHDVTHKFEKEDEYTLSLVKKTGQPVMLLLNK 123 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + +LLE + L ++ +SA KG G D + + +LP+ P + DQI+ Sbjct: 124 IDLIAKPKLLEIITQFSTLHDFKEIIPISAAKGSGLDILRKKVLQSLPVGPHYFPDDQIT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P AEI RE++ + H+E+PY++ V+ E+WEEK+ + I I+VER QK I+ Sbjct: 184 DQPERFLAAEIIREQVLVCAHQEVPYATTVMVEQWEEKRSLT-KIAAAIFVERDGQKAII 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G+ G+++K I A++E+ +IL V L LFVKVQ W Sbjct: 243 IGRGGESLKRIGTNARRELEKILNTKVFLELFVKVQAGW 281 >gi|158521130|ref|YP_001529000.1| GTP-binding protein Era [Desulfococcus oleovorans Hxd3] gi|158509956|gb|ABW66923.1| GTP-binding protein Era [Desulfococcus oleovorans Hxd3] Length = 303 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 174/290 (60%), Gaps = 6/290 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 KDF RSG +A+ G NAGKSTL+N G K+SI + K QTTR+ + G+V+ K +Q+ Sbjct: 9 KDF-----RSGFIAICGPPNAGKSTLLNLLAGEKISITSDKPQTTRNRILGVVNRKNAQV 63 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 VF+DTPGIF K + ++ + S + D++ LV+D + K H ++ + + Sbjct: 64 VFVDTPGIFRPKGKLNTAIVGTAVSALADVDVILLVIDVVKPRKDAEHLTIEHLKHHNKP 123 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ++L LNKID +K +LLE + +L E+ +SA + +D++ L + LP + Sbjct: 124 VVLALNKIDRIKKHKLLEMIDSWQRLYAFERIVPISALESIQTEDLMAELETLLPEGGPL 183 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + + ++D P AE+ REK+F +EIPY++ V + ++EKK+GS++ I+ I+VE Sbjct: 184 FPEEMLTDAPERFLAAEMIREKVFRLTGQEIPYATAVTIDTFKEKKEGSVIHIQATIHVE 243 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 R SQK I++GK G +K I E++++I ++ V L LFV+VQK+W D Sbjct: 244 RDSQKGIVIGKQGAMLKQIGQESRQDIEQMTGARVFLELFVRVQKNWSSD 293 >gi|327312577|ref|YP_004328014.1| ribosome biogenesis GTPase Era [Prevotella denticola F0289] gi|326944896|gb|AEA20781.1| ribosome biogenesis GTPase Era [Prevotella denticola F0289] Length = 293 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 111/283 (39%), Positives = 166/283 (58%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG K+SI T K QTTR + GIV+ +SQIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDSQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M++ S S + AD++ V D + N+ D L+++AK + +IL++NKI Sbjct: 63 LKPNYKMQEMMLQFSESALADADVLLYVTDVVENPEKNM-DFLEKVAKMTIPVILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +L+E E + L+ + +SA G D ++ + LP +P + DQ++D Sbjct: 122 DESDQSKLVELVEKWHGLLPDAEILPISAKNKFGTDILMKRVRELLPESPAFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ + KEIPYS VV E+++E D I I VIYVER SQK I++ Sbjct: 182 KPARFFVSEIIREKILRYYDKEIPYSVEVVVERFKE-DDRQIHINAVIYVERSSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G +K + EA+K + ++ + L FVKV KDW + K Sbjct: 241 GHQGMALKKMLTEARKSLERFFDKKIFLETFVKVDKDWRNSQK 283 >gi|156741277|ref|YP_001431406.1| GTP-binding protein Era [Roseiflexus castenholzii DSM 13941] gi|156232605|gb|ABU57388.1| GTP-binding protein Era [Roseiflexus castenholzii DSM 13941] Length = 449 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 113/284 (39%), Positives = 171/284 (60%), Gaps = 2/284 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG N GKSTL+N +G KV+IV+ K QTTR+ +RGI++ ++QIVF+DTPGI Sbjct: 160 RSGFVALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILTRPDAQIVFVDTPGI 219 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ M++ + I AD+VC+VVD R + + K S+R IL+LNKI Sbjct: 220 HEPRNRLGAYMVKQARRAIPDADVVCMVVDITRPPGSLDERIAALVRKASARRILVLNKI 279 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++ +R + + L + VSA +GHG D +++ + LP P +Y Q++D Sbjct: 280 D-LRTKRGSDNLQAYRALAPWDMEVAVSALRGHGLDALVDEIVRLLPEGPPLYPEGQVTD 338 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 L AE+ RE++ + E+P+S V E+WEEK++ + IR I VER +QK I++ Sbjct: 339 LSEREIAAELVREQVLRYTQHEVPHSVAVEIEEWEEKENVT-YIRMTILVERETQKAILI 397 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 G G +K I A++ I E+LE+PV+L L+VK ++ W DP Sbjct: 398 GAGGGMLKKIGSGARQAIEEMLERPVYLDLWVKAREHWRDDPSA 441 >gi|212704882|ref|ZP_03313010.1| hypothetical protein DESPIG_02949 [Desulfovibrio piger ATCC 29098] gi|212671724|gb|EEB32207.1| hypothetical protein DESPIG_02949 [Desulfovibrio piger ATCC 29098] Length = 309 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 8/291 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R G VAL+G NAGKSTL+N +G KV+IVT K QTTR+ + GI+++ ++Q +F+DTP Sbjct: 5 NYRCGWVALMGPPNAGKSTLLNGLMGQKVTIVTPKPQTTRNQIVGILTDDDAQAIFMDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSR 132 G+ + K MI+ W ++ AD++ V+D+H L ++ + + +A Sbjct: 65 GLSQVRGRLSKTMIQAVWQSLGQADVIMPVLDAHLYIRHPEYLDRDLAPVAEALASDERP 124 Query: 133 LILILNKIDC-VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ++++ NK+D R+L N++ + F VSA G ++ + LP Sbjct: 125 MVVVANKVDLFADKSRMLPLLTRLNEMWPRAEIFPVSALNKDGLPELAKLIKKQLPKGIA 184 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG-SILIRQVIYV 250 + DQIS P+ AEI REKLFLHL +E+PY V E W+E + +I VIYV Sbjct: 185 QFPEDQISTAPVRFMAAEIVREKLFLHLRQEVPYGIAVEVENWDEDPEREQTIIHAVIYV 244 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 RP K +++G+ G +K + +EA+++I E++ VHL L+VKV+++W D Sbjct: 245 ARPMHKGMVIGRGGSVLKQVGMEARQDIRELIGGKVHLELWVKVRENWTED 295 >gi|260591203|ref|ZP_05856661.1| GTP-binding protein Era [Prevotella veroralis F0319] gi|260537068|gb|EEX19685.1| GTP-binding protein Era [Prevotella veroralis F0319] Length = 293 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/283 (39%), Positives = 167/283 (59%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG K+SI T K QTTR + GIV+ +SQIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDDSQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M++ S S + ADI+ V D + N+ D L++++K + +IL++NKI Sbjct: 63 LKPNYKMQEMMLQFSESALADADILLYVTDVVENPEKNM-DFLEKVSKMTIPVILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++L + +KL+ + +SA G D ++ + LP +P + DQ++D Sbjct: 122 DESDQKKLGDLVGRWHKLLPNAEILPISAKNKFGTDILMKRIHELLPDSPAFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ + KE+PYS VV E+++E D I I VIYVER SQK I++ Sbjct: 182 KPARFFVSEIIREKILRYYDKEVPYSVEVVVERFKE-DDRQIHINAVIYVERSSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G +K +S EA+K + ++ V L FVKV KDW + K Sbjct: 241 GHQGMALKKVSTEARKSLERFFDKKVFLETFVKVDKDWRNSQK 283 >gi|241895551|ref|ZP_04782847.1| GTP-binding protein Era [Weissella paramesenteroides ATCC 33313] gi|241871129|gb|EER74880.1| GTP-binding protein Era [Weissella paramesenteroides ATCC 33313] Length = 302 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 171/286 (59%), Gaps = 2/286 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +ALVG N GKSTL+N+ +G K++I++ K QTTR+ ++GI + E Q++F+DTPGI Sbjct: 7 KSGFIALVGRPNVGKSTLLNKMIGEKIAIMSPKAQTTRNKIQGIYTTNEGQMIFMDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +S M++ + S ++ +D+V L+V++ +E V ++K + + ++ + LI+NK+ Sbjct: 67 HKPHNSLGDFMVKTAMSALRESDMVWLLVNADQERGVGDDFIIKRLKESNTPVYLIINKV 126 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + +L Q A+ + ++ F E F +SA G G ++L + + P Y ADQ++ Sbjct: 127 DLINRAEVLNQIADYSAQMDFAE-IFPISALTGEGVPELLAFTMDHMAAGPQYYPADQLT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P +E+ REK+ +E+P+S VV +K E + + + ++ I VERPSQK I+ Sbjct: 186 DHPERFIMSELIREKVLELTRQEVPHSVAVVIDKIEREDEQRLHVQATIVVERPSQKNII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +GK G IK I A+K+I +L + L +VKV+ W P+ Sbjct: 246 IGKRGAMIKEIGTRARKDIERLLGDKIFLETWVKVEDRWRDKPQAL 291 >gi|307564581|ref|ZP_07627121.1| GTP-binding protein Era [Prevotella amnii CRIS 21A-A] gi|307346739|gb|EFN92036.1| GTP-binding protein Era [Prevotella amnii CRIS 21A-A] Length = 293 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 109/283 (38%), Positives = 165/283 (58%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG K+SI T K QTTR + GIV+ +QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTDNAQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M++ S S + ADI+ V D + K NI D L +++K +IL++NKI Sbjct: 63 LKPNYKMQEMMLQFSESALADADILLYVTDVVEDPKKNI-DFLDKVSKMQIPVILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +RL+ +I + L+ + +SA G D +L + LP +P + DQ++D Sbjct: 122 DESDQQRLVMLVDIWHSLLPNAEILPISAQNKFGTDILLKRIYELLPESPAFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ + KE+PYS VV + ++E + I I +IYVER SQK I++ Sbjct: 182 KPAKFFVSEIIREKILRYYDKEVPYSVEVVVDSFKE-NEQQIHIGAIIYVERNSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G +K +S EA+K + + + + +FVKV KDW + K Sbjct: 241 GHQGHALKKVSTEARKSLERFFNKKIFMEIFVKVDKDWRNSQK 283 >gi|188997612|ref|YP_001931863.1| GTP-binding protein Era [Sulfurihydrogenibium sp. YO3AOP1] gi|188932679|gb|ACD67309.1| GTP-binding protein Era [Sulfurihydrogenibium sp. YO3AOP1] Length = 307 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 111/290 (38%), Positives = 178/290 (61%), Gaps = 9/290 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R+G VA+VG N GKSTL+N +G K+SIV+ + QTTR + G+ ++QI+FLDT Sbjct: 8 ENFRAGFVAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLDT 67 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRL 133 PG+ D K ++ S I+ AD++ +V+D+ +E K + + LK++ K + Sbjct: 68 PGVQKGGDLLTKSVMEFVISGIESADVILMVIDAETGWTKEDKEIVENYLKKVDKPA--- 124 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 IL +NKID +K + +L E + K+ ++ +SA K D+++ + LP + +Y Sbjct: 125 ILAINKIDKIKRDLVLPLIEESTKIYDFKEFVPISAIKNLNIDELIETIKKYLPESLPLY 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVE 251 DQI+DLP+ + AEI REK+FL+ +E+PYS V E + EK ++I VIYVE Sbjct: 185 PEDQITDLPLKFYIAEIIREKVFLNTRQEVPYSVAVEVESIQEGEKNKNLLIIDAVIYVE 244 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 R + K I++GK GQ +K I ++A++E+ +L + VHL L+VKV++ W D Sbjct: 245 RENHKGIIIGKQGQMLKKIGMQAREELEFLLGKKVHLNLYVKVKERWKED 294 >gi|116333398|ref|YP_794925.1| GTPase [Lactobacillus brevis ATCC 367] gi|116098745|gb|ABJ63894.1| GTPase [Lactobacillus brevis ATCC 367] Length = 301 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 99/278 (35%), Positives = 164/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKST +NR +G K++I+++ QTTR+ ++GI + E+QIVF+DTPG+ Sbjct: 7 KSGFVAIVGRPNVGKSTFLNRVIGQKIAIMSNTAQTTRNKIQGIYTTDEAQIVFIDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++ + S + D V +V++ + + ++ + + + L++NKI Sbjct: 67 HKPKSKLGDYMVQSAMSALNEVDAVLFMVNAAEKRGAGDNFIIDRLKNVKAPVYLLINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VKP+ LL E + + + +SA +G+ D++L L +P P Y ADQ++D Sbjct: 127 DQVKPDDLLPVMEQYQTALPWKAVYPISALEGNNVDELLTGLVEQMPNGPQYYPADQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+F+ +E+P+S V E ++K + + I I VERP+QK IM+ Sbjct: 187 HPERFVVSELIREKIFMLTREEVPHSVAVEIESMKQKDEDHVHIEATIIVERPTQKGIMI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K I A+++I +L V+L L+VKVQ +W Sbjct: 247 GKGGSMLKKIGTLARQDIEHLLGSKVYLQLWVKVQPNW 284 >gi|259046831|ref|ZP_05737232.1| GTP-binding protein Era [Granulicatella adiacens ATCC 49175] gi|259036454|gb|EEW37709.1| GTP-binding protein Era [Granulicatella adiacens ATCC 49175] Length = 302 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKST +N +G K++I++ K QTTR+ ++G+ ++ +QIVFLDTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTFMNYVLGQKIAIMSDKAQTTRNKIQGVYTKDNAQIVFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++ ++S +K D V +V+ + +++++ + + L+LNKI Sbjct: 66 HKPKHELGEFMVKSAYSALKEVDAVLFMVNVSEKRGPGDDFIIEKLKGIKTPIFLVLNKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V PE LLE+ E + F +S +G+ ++++ L LP P Y ADQI+D Sbjct: 126 DLVTPEVLLERVESYKDALDFAGVFPISVLQGNNVNELMEALIEALPEGPQYYPADQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ +EIP+S V +K ++ + + + I VER SQK I++ Sbjct: 186 HPEYFVVSELIREKILQLTQEEIPHSVAVTVDKMQKDEFDKVHVYANIIVERKSQKGIII 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I A+++I ++L V+L L+VKV+KDW Sbjct: 246 GKGGRLLKEIGTRARRDIQQLLGNKVYLELWVKVEKDW 283 >gi|308535355|ref|YP_003933744.1| GTP-binding protein Era [Geobacter bemidjiensis Bem] gi|308052700|gb|ADO00832.1| LOW QUALITY PROTEIN: GTP-binding protein Era [Geobacter bemidjiensis Bem] Length = 297 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 102/283 (36%), Positives = 167/283 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V++VG N GKSTL+NR +G K+ I + K QTTR+ ++GI + QIVF+DTPGI Sbjct: 7 RSGFVSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK +K M+ + S+++ D++ +VD + + + + ++ + +IL++NKI Sbjct: 67 HRAKSRLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILVMNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V LLE+ ++ VSA G G + ++ + LP P + D ++D Sbjct: 127 DLVPKGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLVQLVHGLLPEGPCYFPDDILTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +P AEI REK+F H E+PYS+ VV + ++E+++G + I I VER SQK I++ Sbjct: 187 VPERFIVAEIVREKIFRLTHDEVPYSTAVVVDSFKERENGVVAISATINVERDSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 GK G+ +K I ++++EI +L+ V L LFV+V +W + + Sbjct: 247 GKKGEMLKRIGTQSRQEIERLLDTKVFLELFVRVSGEWSDNSR 289 >gi|293571622|ref|ZP_06682643.1| GTP-binding protein Era [Enterococcus faecium E980] gi|291608292|gb|EFF37593.1| GTP-binding protein Era [Enterococcus faecium E980] Length = 299 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++G+ + E+Q++F+DTPGI Sbjct: 5 KSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ ++S +K D V ++ + ++ +++ + S + LI+NKI Sbjct: 65 HKPKHRLGDFMVEAAYSALKEVDAVLFMISADQKRGRGDDFIIERLKNVHSPVYLIINKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ LL E + + + +SAT+G+ + +++ L S +P P + DQ++D Sbjct: 125 DKIHPDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ E+P+S VV + + ++ I I+ I VER SQK I++ Sbjct: 185 HPEYFIVSELIREKVLFLTRDEVPHSVAVVVDSMKRNENDKIHIQATIIVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + +A+K+I +L V L L+VKVQKDW Sbjct: 245 GKGGKMLKQVGTKARKDIENLLGDKVFLELWVKVQKDW 282 >gi|253699692|ref|YP_003020881.1| GTP-binding protein Era [Geobacter sp. M21] gi|259645946|sp|C6E2H7|ERA_GEOSM RecName: Full=GTPase Era gi|251774542|gb|ACT17123.1| GTP-binding protein Era [Geobacter sp. M21] Length = 297 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 102/283 (36%), Positives = 166/283 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V++VG N GKSTL+NR +G K+ I + K QTTR+ ++GI + QIVF+DTPGI Sbjct: 7 RSGFVSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK +K M+ + S+++ D++ +VD + + + + ++ + +IL++NKI Sbjct: 67 HRAKSRLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILVMNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V LLE+ ++ VSA G G + ++ + LP P + D ++D Sbjct: 127 DLVPKGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLVQLVHGLLPEGPCYFPDDILTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +P AEI REK+F H E+PYS+ VV + ++E+++G + I I VER SQK I++ Sbjct: 187 VPERFIVAEIVREKIFRLTHDEVPYSTAVVVDSFKERENGVVAISATINVERDSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 GK G +K I ++++EI +L+ V L LFV+V +W + + Sbjct: 247 GKRGDMLKRIGTQSRQEIERLLDTKVFLELFVRVSGEWSDNSR 289 >gi|47567864|ref|ZP_00238572.1| GTP-binding protein Era [Bacillus cereus G9241] gi|47555541|gb|EAL13884.1| GTP-binding protein Era [Bacillus cereus G9241] Length = 301 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 168/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ +E +SQ++F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K DIV +V++ +++++ + + L++NKI Sbjct: 67 HKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V PE+LLE + KL + +SA G+ + ++ + LP P Y +Q++D Sbjct: 127 DQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNVESLIGTIKKYLPEGPQYYPDNQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S VV + ++++ G++ I I VERPSQK I++ Sbjct: 187 HPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERPSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V L ++VKVQKDW Sbjct: 247 GKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDW 284 >gi|255087368|ref|XP_002505607.1| predicted protein [Micromonas sp. RCC299] gi|226520877|gb|ACO66865.1| predicted protein [Micromonas sp. RCC299] Length = 292 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 118/286 (41%), Positives = 170/286 (59%), Gaps = 8/286 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG NAGKSTL+N+ VG K+SIVT K QTTR + GIVSE Q+V LDTPG+ Sbjct: 2 RSGYVAIVGRPNAGKSTLLNQLVGTKLSIVTFKPQTTRHRILGIVSEDHYQMVLLDTPGV 61 Query: 81 FNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 K+ ++KL M++ + + +AD++ +VD+ R+ LL E + L +I+ Sbjct: 62 M--KEEFNKLDEMMLKSVRNAMANADVLLAIVDATRDPYGAFEGLLPEHRANPAPLGVII 119 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D ++ + + E E + +E+ F VSA G G D V + + LP P +Y D Sbjct: 120 NKCDLLQVDEIREVKEYFEGIPGVERVFPVSALAGVGHDAVREWALTHLPEGPTLYPKDT 179 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG--SILIRQVIYVERPSQ 255 IS+ P F AEI REK+FL +E+PYS+ V E +E +DG LI I+ ER SQ Sbjct: 180 ISEHPERFFIAEIIREKIFLQYQQEVPYSTQVWVESHKE-RDGVKKDLILAKIFCERKSQ 238 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK G+ +K +S A+ +I + L +PV L L VKV++ W D Sbjct: 239 MGILIGKEGRALKELSTAARLDIEKFLGRPVFLDLGVKVREGWRSD 284 >gi|81428488|ref|YP_395488.1| putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610130|emb|CAI55179.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K] Length = 300 Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 104/286 (36%), Positives = 167/286 (58%), Gaps = 6/286 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + D RSG VA+VG N GKST +NR +G K++I++ K QTTR+ ++GI ++ +QIVF+ Sbjct: 1 MSDTYRSGFVAIVGRPNVGKSTFMNRMIGEKIAIMSSKAQTTRNKIQGIYTDDNAQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLV---VDSHRELKVNIHDLLKEIAKRSSR 132 DTPGI + + M + + ST D + + VD I D LK + K Sbjct: 61 DTPGIHKPHNELDEYMDQAALSTFNEVDAILFMISGVDKKGPGDQYIMDQLKNVKKP--- 117 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + L++NKID + P+ LL E + + + +SA +G+ ++L L TLP P Sbjct: 118 VYLVVNKIDAIHPDDLLPMIEQYRHELDFKAVYPISALEGNNVPEMLKELELTLPEGPQY 177 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y DQ++D P + E+ REK+ H+E+P+S VV E+ +++ +G + I I VER Sbjct: 178 YPEDQLTDHPEYFVVGELIREKILELTHEEVPHSVAVVVERMKDRVNGKLQIEANIIVER 237 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK+I++G+ G IK I + +++EI +L + V+L L+VK+QK+W Sbjct: 238 DGQKRIIIGQKGSIIKEIGIRSRREIEALLGEKVNLKLWVKIQKNW 283 >gi|222632589|gb|EEE64721.1| hypothetical protein OsJ_19577 [Oryza sativa Japonica Group] Length = 423 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 113/289 (39%), Positives = 171/289 (59%), Gaps = 9/289 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG VA++G N GKSTL+N+ VG K+SIVT K QTTR + GI SE E QI+ DTP Sbjct: 122 NHRSGYVAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDTP 181 Query: 79 GIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL- 133 G+ K HKL M++ S + AD V +VVD+ + + I ++L+E + + + L Sbjct: 182 GVI--KKEMHKLDTMMMKNVRSAVGSADCVLVVVDACK-MPEKIDEILEEGVGNKDTELP 238 Query: 134 -ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +L+LNK D +KP + ++ E K + +SA GHG DD+ ++ S LPL P Sbjct: 239 VLLVLNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGPAY 298 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D S+ P F EI REK+FL +EIPY+ V ++ + I+ I VE+ Sbjct: 299 YPKDIASEHPERFFVGEIVREKIFLQYRQEIPYACQVNVISYKSRPTAKDFIQVEILVEK 358 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQ+ I+LGK+G+ IK ++ ++ +I + L++ V+L + VKV+++W D Sbjct: 359 ESQRSIILGKDGKAIKMLATASRLDIEDFLQKKVYLEIMVKVKENWRQD 407 >gi|125553352|gb|EAY99061.1| hypothetical protein OsI_21018 [Oryza sativa Indica Group] Length = 423 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 113/289 (39%), Positives = 171/289 (59%), Gaps = 9/289 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG VA++G N GKSTL+N+ VG K+SIVT K QTTR + GI SE E QI+ DTP Sbjct: 122 NHRSGYVAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDTP 181 Query: 79 GIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL- 133 G+ K HKL M++ S + AD V +VVD+ + + I ++L+E + + + L Sbjct: 182 GVI--KKEMHKLDTMMMKNVRSAVGSADCVLVVVDACK-MPEKIDEILEEGVGNKDTELP 238 Query: 134 -ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +L+LNK D +KP + ++ E K + +SA GHG DD+ ++ S LPL P Sbjct: 239 VLLVLNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGPAY 298 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D S+ P F EI REK+FL +EIPY+ V ++ + I+ I VE+ Sbjct: 299 YPKDIASEHPERFFVGEIVREKIFLQYRQEIPYACQVNVISYKSRPTAKDFIQVEILVEK 358 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQ+ I+LGK+G+ IK ++ ++ +I + L++ V+L + VKV+++W D Sbjct: 359 ESQRSIILGKDGKAIKMLATASRLDIEDFLQKKVYLEIMVKVKENWRQD 407 >gi|30264370|ref|NP_846747.1| GTP-binding protein Era [Bacillus anthracis str. Ames] gi|47529821|ref|YP_021170.1| GTP-binding protein Era [Bacillus anthracis str. 'Ames Ancestor'] gi|49187195|ref|YP_030447.1| GTP-binding protein Era [Bacillus anthracis str. Sterne] gi|65321672|ref|ZP_00394631.1| COG1159: GTPase [Bacillus anthracis str. A2012] gi|165872076|ref|ZP_02216716.1| GTP-binding protein Era [Bacillus anthracis str. A0488] gi|167634499|ref|ZP_02392819.1| GTP-binding protein Era [Bacillus anthracis str. A0442] gi|167638699|ref|ZP_02396975.1| GTP-binding protein Era [Bacillus anthracis str. A0193] gi|170687400|ref|ZP_02878617.1| GTP-binding protein Era [Bacillus anthracis str. A0465] gi|170707479|ref|ZP_02897933.1| GTP-binding protein Era [Bacillus anthracis str. A0389] gi|177653279|ref|ZP_02935531.1| GTP-binding protein Era [Bacillus anthracis str. A0174] gi|190566974|ref|ZP_03019890.1| GTP-binding protein Era [Bacillus anthracis Tsiankovskii-I] gi|227817076|ref|YP_002817085.1| GTP-binding protein Era [Bacillus anthracis str. CDC 684] gi|229602326|ref|YP_002868589.1| GTP-binding protein Era [Bacillus anthracis str. A0248] gi|254684057|ref|ZP_05147917.1| GTP-binding protein Era [Bacillus anthracis str. CNEVA-9066] gi|254736405|ref|ZP_05194111.1| GTP-binding protein Era [Bacillus anthracis str. Western North America USA6153] gi|254741443|ref|ZP_05199130.1| GTP-binding protein Era [Bacillus anthracis str. Kruger B] gi|254750881|ref|ZP_05202920.1| GTP-binding protein Era [Bacillus anthracis str. Vollum] gi|254757791|ref|ZP_05209818.1| GTP-binding protein Era [Bacillus anthracis str. Australia 94] gi|30259028|gb|AAP28233.1| GTP-binding protein Era [Bacillus anthracis str. Ames] gi|47504969|gb|AAT33645.1| GTP-binding protein Era [Bacillus anthracis str. 'Ames Ancestor'] gi|49181122|gb|AAT56498.1| GTP-binding protein Era [Bacillus anthracis str. Sterne] gi|164712207|gb|EDR17744.1| GTP-binding protein Era [Bacillus anthracis str. A0488] gi|167513547|gb|EDR88917.1| GTP-binding protein Era [Bacillus anthracis str. A0193] gi|167529951|gb|EDR92686.1| GTP-binding protein Era [Bacillus anthracis str. A0442] gi|170127723|gb|EDS96596.1| GTP-binding protein Era [Bacillus anthracis str. A0389] gi|170668595|gb|EDT19341.1| GTP-binding protein Era [Bacillus anthracis str. A0465] gi|172081561|gb|EDT66633.1| GTP-binding protein Era [Bacillus anthracis str. A0174] gi|190561965|gb|EDV15934.1| GTP-binding protein Era [Bacillus anthracis Tsiankovskii-I] gi|227004139|gb|ACP13882.1| GTP-binding protein Era [Bacillus anthracis str. CDC 684] gi|229266734|gb|ACQ48371.1| GTP-binding protein Era [Bacillus anthracis str. A0248] Length = 301 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 168/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ +E +SQ++F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K DIV +V++ +++++ + + L++NKI Sbjct: 67 HKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V PE+LLE + KL + +SA G+ + ++ + LP P Y +Q++D Sbjct: 127 DQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNAEALIGTIKKYLPEGPQYYPDNQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S VV + ++++ G++ I I VERPSQK I++ Sbjct: 187 HPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERPSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V L ++VKVQKDW Sbjct: 247 GKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDW 284 >gi|291166725|gb|EFE28771.1| GTP-binding protein Era [Filifactor alocis ATCC 35896] Length = 301 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 176/279 (63%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST++N +G KVSIV++K QTTR+ + GI ++++ QIVFLDTPG+ Sbjct: 6 KSGFVSIIGRPNVGKSTILNWIIGEKVSIVSNKPQTTRNRISGIYNDEDCQIVFLDTPGM 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N ++ K M++ S ST+K D++ VVD+ + ++++++ S+ IL++NK+ Sbjct: 66 QNPRNKLGKYMLKASTSTMKDTDLIMCVVDTSSYIGRMDKNIMEQLKHTSNTKILVINKM 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E L+ + + L ++ VSA KG D ++ L L P Y D +D Sbjct: 126 DQIPKEEALKIISMYDALGIFDEIIPVSALKGDNMDSIVPTLQKYLTYGPKFYPDDVATD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 + +EI REK+ L+ +EIP+ + V E+ +E++D I+ I +I+ ER S KKI+ Sbjct: 186 QTLKVMISEIIREKILLYTDEEIPHGTMVQIERLKEREDKEIVDIDALIFCERSSHKKIL 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK+G+ IK I + A+KE+ +LE+ V+L L++KV+++W Sbjct: 246 IGKDGRKIKGIGMAARKELEAMLEKQVNLSLWLKVKENW 284 >gi|268315826|ref|YP_003289545.1| GTP-binding protein Era [Rhodothermus marinus DSM 4252] gi|262333360|gb|ACY47157.1| GTP-binding protein Era [Rhodothermus marinus DSM 4252] Length = 311 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 114/280 (40%), Positives = 162/280 (57%), Gaps = 6/280 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G K+SIVT K QTTR V GI+S QIVFLDTPG+ Sbjct: 24 RSGYVAIVGKPNVGKSTLMNALLGHKLSIVTPKPQTTRHRVLGILSGDTYQIVFLDTPGV 83 Query: 81 FN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 A+ H+ M+R + AD+V + ++ ++ I L + R + IL LNK Sbjct: 84 LKKARYKLHEHMLRTVDRAVADADLVLFMAEATQKAPDTIS--LGHLGNRPA--ILALNK 139 Query: 140 IDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D V+ E++L + K E +SA G+ D +L + LP P Y DQ+ Sbjct: 140 MDLVRNQEQVLPLVDAYMKQYPFEAVVPISALTGYNLDVLLKEIIHRLPPGPPFYPKDQL 199 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 S+ P F AEI REK+F +EIPY++ V ++E+ +G I I VERP+QK I Sbjct: 200 SEHPERFFVAEIIREKIFEQFREEIPYAAQVNIVDYKERPEGKDFIDAEIIVERPTQKAI 259 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK GQ +K + A++EI L +PV+L L VKV++DW Sbjct: 260 LIGKGGQALKRLGTAARQEIEAFLGRPVYLQLHVKVREDW 299 >gi|283853446|ref|ZP_06370690.1| GTP-binding protein Era [Desulfovibrio sp. FW1012B] gi|283571166|gb|EFC19182.1| GTP-binding protein Era [Desulfovibrio sp. FW1012B] Length = 294 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 170/287 (59%), Gaps = 8/287 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G TNAGKSTL+NR +G KVSIV+ K QTTR+ + GI++E+ +Q VFLDTPG+ K Sbjct: 1 MLGPTNAGKSTLLNRVIGQKVSIVSPKPQTTRNSISGILTEEGAQAVFLDTPGLHRQKRG 60 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHR------ELKVNIHDLLKEIAKRSSRLILILNKI 140 L++R +++ + AD+V +++D + LK ++ +++ + +++ LNK Sbjct: 61 IAPLLLRSAYAALTRADVVLVLLDGAQYARRLEGLKNDLLPIVRVLKDSPVPVVVALNKA 120 Query: 141 DCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V+ + R+L + + + F VSA G G ++L L + LP P + D++S Sbjct: 121 DVVREKARMLPVLAAVGEALPGAELFPVSALTGLGVKELLAALFARLPEGPHQFDPDEVS 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVERPSQKKI 258 P+ +EI REK+FL L +E+PYS+ V E W EE K G + I+ I V R S K + Sbjct: 181 TAPVRFLASEIVREKVFLALGEELPYSTAVTVEDWDEESKPGLVKIQASILVGRESHKPM 240 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++GK G+ IK I +A+ +I E+L V L L+VKV+ +W DP Sbjct: 241 VIGKGGERIKDIGQKARIDIEEMLGTKVFLELWVKVRPNWADDPALL 287 >gi|42783426|ref|NP_980673.1| GTP-binding protein Era [Bacillus cereus ATCC 10987] gi|49481311|ref|YP_038355.1| GTP-binding protein Era [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141202|ref|YP_085626.1| GTP-binding protein Era [Bacillus cereus E33L] gi|118479469|ref|YP_896620.1| GTP-binding protein Era [Bacillus thuringiensis str. Al Hakam] gi|196034381|ref|ZP_03101790.1| GTP-binding protein Era [Bacillus cereus W] gi|196039186|ref|ZP_03106492.1| GTP-binding protein Era [Bacillus cereus NVH0597-99] gi|196046320|ref|ZP_03113546.1| GTP-binding protein Era [Bacillus cereus 03BB108] gi|206978417|ref|ZP_03239286.1| GTP-binding protein Era [Bacillus cereus H3081.97] gi|217961790|ref|YP_002340360.1| GTP-binding protein Era [Bacillus cereus AH187] gi|218905437|ref|YP_002453271.1| GTP-binding protein Era [Bacillus cereus AH820] gi|222097745|ref|YP_002531802.1| gtp-binding protein era [Bacillus cereus Q1] gi|225866281|ref|YP_002751659.1| GTP-binding protein Era [Bacillus cereus 03BB102] gi|254721891|ref|ZP_05183680.1| GTP-binding protein Era [Bacillus anthracis str. A1055] gi|301055792|ref|YP_003794003.1| GTP-binding protein [Bacillus anthracis CI] gi|42739355|gb|AAS43281.1| GTP-binding protein Era [Bacillus cereus ATCC 10987] gi|49332867|gb|AAT63513.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974671|gb|AAU16221.1| GTP-binding protein [Bacillus cereus E33L] gi|118418694|gb|ABK87113.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam] gi|195992923|gb|EDX56882.1| GTP-binding protein Era [Bacillus cereus W] gi|196022790|gb|EDX61471.1| GTP-binding protein Era [Bacillus cereus 03BB108] gi|196029813|gb|EDX68414.1| GTP-binding protein Era [Bacillus cereus NVH0597-99] gi|206743373|gb|EDZ54811.1| GTP-binding protein Era [Bacillus cereus H3081.97] gi|217063790|gb|ACJ78040.1| GTP-binding protein Era [Bacillus cereus AH187] gi|218535830|gb|ACK88228.1| GTP-binding protein Era [Bacillus cereus AH820] gi|221241803|gb|ACM14513.1| GTP-binding protein [Bacillus cereus Q1] gi|225786790|gb|ACO27007.1| GTP-binding protein Era [Bacillus cereus 03BB102] gi|300377961|gb|ADK06865.1| GTP-binding protein [Bacillus cereus biovar anthracis str. CI] gi|324328204|gb|ADY23464.1| GTPase Era [Bacillus thuringiensis serovar finitimus YBT-020] Length = 301 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 168/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ +E +SQ++F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K DIV +V++ +++++ + + L++NKI Sbjct: 67 HKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V PE+LLE + KL + +SA G+ + ++ + LP P Y +Q++D Sbjct: 127 DQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNVEALIGTIKKYLPEGPQYYPDNQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S VV + ++++ G++ I I VERPSQK I++ Sbjct: 187 HPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERPSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V L ++VKVQKDW Sbjct: 247 GKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDW 284 >gi|303236850|ref|ZP_07323429.1| GTP-binding protein Era [Prevotella disiens FB035-09AN] gi|302483018|gb|EFL46034.1| GTP-binding protein Era [Prevotella disiens FB035-09AN] Length = 293 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 108/283 (38%), Positives = 168/283 (59%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG K+SI T K QTTR + GIV+ ++ QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGEKISIATFKAQTTRHRIMGIVNTEDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M+ S S + ADI+ V D + + N + L+++AK +IL++NKI Sbjct: 63 LKPNYKMQEMMLHFSESALADADILLYVTDVIEKPEKN-SEFLEKVAKMDIPVILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + ++E E + L+ + +SA G D +++ + LP +P + DQ++D Sbjct: 122 DESDQKTVVELVEKWHTLLPKAEILPLSAKNKFGTDALMHRIQELLPESPAYFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ + KE+PYS VV E+++E + I I +IYVER SQK I++ Sbjct: 182 KPAKFFVTEIIREKILRYYDKEVPYSVEVVVERFKE-DEKKIHINAIIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G GQ +K +S EA+K + + ++ ++L FVKV KDW + K Sbjct: 241 GHQGQALKKVSTEARKSLEKFFDKKIYLETFVKVDKDWRNSQK 283 >gi|227892551|ref|ZP_04010356.1| GTP-binding protein Era [Lactobacillus ultunensis DSM 16047] gi|227865672|gb|EEJ73093.1| GTP-binding protein Era [Lactobacillus ultunensis DSM 16047] Length = 301 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 177/299 (59%), Gaps = 10/299 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E KDF +SG VAL+G N GKSTL+N VG KV+I ++K QTTR+ + GI + + Sbjct: 2 EEKDF-----KSGFVALIGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSNKM 56 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK 128 Q+VF+DTPGIF M + S S++ D+V +V+ K + I DLLKE+ Sbjct: 57 QVVFVDTPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEEIGKGDQYIADLLKEV-- 114 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + L++NK+D + P +LL + +KL ++ +SAT+G G +D+L + LP Sbjct: 115 -KVPVFLVINKVDQIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLGTINKYLPE 173 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P Y ADQI+D P + AE+ RE++ + +E+P+++ V + + + G ++I I Sbjct: 174 GPQYYGADQITDRPEYFVVAELIREQILVLTSQEVPHATAVAVDHMNKHERGKLVIEATI 233 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 YVE+ QK I++GK G+ +K I + ++KEI +L + V+L L+VKVQ +W DP Q Sbjct: 234 YVEKDGQKGIIIGKGGKMLKQIGINSRKEIENLLGEKVNLRLWVKVQYNWRSDPGFLKQ 292 >gi|260101321|ref|ZP_05751558.1| GTP-binding protein Era [Lactobacillus helveticus DSM 20075] gi|260084906|gb|EEW69026.1| GTP-binding protein Era [Lactobacillus helveticus DSM 20075] gi|328465883|gb|EGF37066.1| GTPase Era [Lactobacillus helveticus MTCC 5463] Length = 301 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 179/299 (59%), Gaps = 10/299 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K+F +SG VAL+G N GKSTL+N VG KV+I ++K QTTR+ + GI + + Sbjct: 2 EEKEF-----KSGFVALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKM 56 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK 128 Q+VF+DTPGIF M + S S++ D+V +V+ K + I +LLKE+ Sbjct: 57 QVVFVDTPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEEIGKGDQYIANLLKEV-- 114 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + L++NK+D + P +LL + +KL ++ +SAT+G G +D+LN + LP Sbjct: 115 -KVPVFLVINKVDQIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYLPE 173 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P Y ADQI+D P + AE+ RE++ +E+P+++ V ++ + ++G +LI I Sbjct: 174 GPQYYGADQITDRPEYFVVAELIREQILRLTSQEVPHATAVAVDQMNKHQNGKLLIEATI 233 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 YVE+ QK I++GK G+ +K I + ++KEI +L + V+L L+VKVQ +W DP Q Sbjct: 234 YVEKDGQKGIIIGKGGKMLKQIGVNSRKEIEHLLGEKVNLRLWVKVQHNWRSDPSFLKQ 292 >gi|78223518|ref|YP_385265.1| GTP-binding protein Era [Geobacter metallireducens GS-15] gi|123571481|sp|Q39T84|ERA_GEOMG RecName: Full=GTPase Era gi|78194773|gb|ABB32540.1| GTP-binding protein Era [Geobacter metallireducens GS-15] Length = 298 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 175/293 (59%), Gaps = 4/293 (1%) Query: 16 VQDNS-RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 + DN RSG V+++G N GKSTL+NR +G K+ I + K QTTR+ ++GI + +QIVF Sbjct: 1 MSDNPFRSGFVSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNVPGAQIVF 60 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DTPGI A+ +K M+ ++ S I+ D+V +V+++++ +++ +A ++ + Sbjct: 61 IDTPGIHQARSRLNKYMVEVALSAIREVDLVLFLVEANQKPGEQEQEIIDVLAGATAPVF 120 Query: 135 LILNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L++NK+D + +LE+ A ++ F E +SA G G D ++ + LP P + Sbjct: 121 LVINKVDLTEKGAVLERIAAYKDRYPFRE-IVPISAGTGDGVDHLVELVRKALPQGPVYF 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 D ++D+P AEI REK+F E+PY++ V + ++E++DG ++ I I VER Sbjct: 180 PDDILTDVPERFIAAEIIREKVFRMTRDEVPYATAVEVDSFKEREDGGLVSIAATITVER 239 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 SQK I++GK G +K I A+ EI ++L V L LFV+V+KDW D + Sbjct: 240 DSQKGIIIGKKGAMLKKIGSAARVEIEKLLNTKVFLELFVRVRKDWSEDERML 292 >gi|313202782|ref|YP_004041439.1| GTP-binding protein era [Paludibacter propionicigenes WB4] gi|312442098|gb|ADQ78454.1| GTP-binding protein Era [Paludibacter propionicigenes WB4] Length = 293 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 164/278 (58%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N VG ++SI+T K QTTR + GIV+ + QIV+ DTPG+ Sbjct: 3 KSGFVNIVGNPNVGKSTLMNALVGERISIITSKAQTTRHRILGIVNGDDFQIVYSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ S S + AD++ V D + N D ++++ + L+LI+NKI Sbjct: 63 LKPNYRLQESMLKFSRSALSDADVLLYVTDVFDSYEKN-EDFVEKVKLNPAPLLLIINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E+L+ E +L+ + + VSA + D + + + LP +P + DQ++D Sbjct: 122 DLIDEEKLVVLVEKWKELLPRAEIYPVSALEKFNIDSLFSRIKDLLPESPPFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ ++ KEIPYS V E+++E D I I VIY ER SQK I++ Sbjct: 182 KPAKFFVTEIIREKILMNYEKEIPYSVEVEVEQFQE-DDRLIRINAVIYAERDSQKGILI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G+++K + EA+K++ ++ V L LFVKV+KDW Sbjct: 241 GHGGKSLKKVGTEARKDMEVFFDKKVFLELFVKVEKDW 278 >gi|163784387|ref|ZP_02179279.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] gi|159880342|gb|EDP73954.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] Length = 312 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 177/288 (61%), Gaps = 2/288 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++D ++G VALVG N GKSTL+N +G KVSIV+ K QTTR + G+ +K++QI+FL Sbjct: 13 MEDKFKAGFVALVGRPNVGKSTLLNNILGVKVSIVSPKPQTTRMRILGVKHDKDAQIIFL 72 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LI 134 DTPG+ KD K ++ + S+++ AD++ +++D+ + N ++ K+ + +I Sbjct: 73 DTPGVQKGKDILTKTVVESAVSSMEEADLIAMIIDATKGWTKNDLQIVDNYLKKLDKPVI 132 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 LI+NK+D V E LL E + K+ ++ +SA KG D + + LP +P ++ Sbjct: 133 LIINKVDKVPKELLLPLIEQSTKIYEFKEIVPISALKGVNLDRLTQVIKKYLPESPPLFP 192 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 +QI+DLP+ AEI REK F L +E+PYS V E +E + I+ I VIYVE+ Sbjct: 193 ENQITDLPLKFQIAEIIREKAFNILKEELPYSVAVEVENIQEGNNKKIIFIDAVIYVEKE 252 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + KKI++GK GQ IK I A++E+ +L + V+L L+VKV++ W + Sbjct: 253 NHKKIVIGKKGQTIKKIGQLAREELEFLLGKKVYLNLWVKVKERWKEN 300 >gi|152976731|ref|YP_001376248.1| GTP-binding protein Era [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025483|gb|ABS23253.1| GTP-binding protein Era [Bacillus cytotoxicus NVH 391-98] Length = 301 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+ +E ++Q++F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKVQGVYTENDAQVIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K DIV +V++ +++++ + + L++NKI Sbjct: 67 HKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAAEGFGRGEEYIIEKLKETRQPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V PE+LLE + L + +SA +G+ + ++ + LP P Y +Q++D Sbjct: 127 DQVHPEKLLELIDQYRNLYEFAEIVPISALEGNNVEALIGAIKKYLPEGPQYYPENQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S V + ++++ G++ + I VERPSQK I++ Sbjct: 187 HPERFIIAELIREKVLHLTREEVPHSVAVAIDAIQKREGGAVYVNATIIVERPSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I A+ +I +L V L ++VKVQKDW Sbjct: 247 GKQGKMLKEIGKRARFDIEALLGSKVFLEVWVKVQKDW 284 >gi|258593725|emb|CBE70066.1| GTP-binding protein (era) [NC10 bacterium 'Dutch sediment'] Length = 300 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 106/285 (37%), Positives = 172/285 (60%), Gaps = 3/285 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VA++G N GKSTL+NR +G KVSIV+ + QTTR+ + GI S +Q++FLDTP Sbjct: 5 NDKSGFVAIIGRPNVGKSTLMNRLLGQKVSIVSPRPQTTRTKIMGIRSLPGAQLIFLDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-SSRLILIL 137 GI + +H+LM++ + ++++ AD++ +V++ L L+ EI KR +S ++L + Sbjct: 65 GIDKSGGYFHRLMVKTATNSLEGADLILWIVEAPDPLSQG-DKLILEILKRVTSPILLAV 123 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D V+ E LL + L+ + +SATKG + + L LP P +Y DQ Sbjct: 124 NKVDLVQKESLLPTIDRFRSLLPFAEIVPISATKGDNVALLESLLVQYLPEGPPLYPPDQ 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D P AE+ RE++F +++E+PY+ V+ EK ++ ++ + IYVE+ SQK Sbjct: 184 LTDQPDRFIIAELIRERVFRSVYQEVPYAVAVLVEKVRTREGRALTDVEATIYVEKDSQK 243 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++G+ G +K I + EI +L V L L+VKV+ DW D Sbjct: 244 AIIIGRGGAMLKRIGELVRPEIERLLGTQVFLKLWVKVRSDWQKD 288 >gi|150010993|gb|ABR57154.1| GTP-binding protein Era [Staphylococcus xylosus] Length = 299 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKST VNR +G K++I++ K QTTR+ ++G+++++++QI+FLDTPGI Sbjct: 5 KSGFISIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTQEDAQIIFLDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+R++ +T+ D + +V+ + ++ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMRVATNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKTIKTPIFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + + +SA +GH D +N L S LP P Y DQISD Sbjct: 125 DLVHPDELMPRIEKYKRYLDFTEIVPISALEGHNVDHFINVLKSYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P E+ REK+ +EIP++ V ++ ++ + + I I+VER SQK I++ Sbjct: 185 HPEQFVVGELIREKILHLTSEEIPHAIGVNVDRMVKEDEDRVRIEATIFVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V+L L+VKVQKDW Sbjct: 245 GKGGKKLKEVGKRARLDIERLLGSKVYLELWVKVQKDW 282 >gi|270339920|ref|ZP_06006458.2| GTP-binding protein Era [Prevotella bergensis DSM 17361] gi|270333271|gb|EFA44057.1| GTP-binding protein Era [Prevotella bergensis DSM 17361] Length = 310 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 110/293 (37%), Positives = 168/293 (57%), Gaps = 7/293 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ E QIVF DT Sbjct: 17 DMHKAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEMQIVFSDT 76 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ ++M+ S S + ADI+ V D + N+ D L + + +IL++ Sbjct: 77 PGVLKPNYKMQEMMLAFSESALSDADILLYVTDVVENPEKNM-DFLNRVKTMTIPVILLI 135 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID ++L + E + L+ + +SA G D ++ + LP +P + DQ Sbjct: 136 NKIDETDQQKLGDLVEKWHALLPNAEILPISAKNKFGTDILMKRIAELLPESPAYFDKDQ 195 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P F +EI REK+ + KEIPYS VV E+++E + + I VIYVER SQK Sbjct: 196 LTDKPARFFVSEIIREKILRYYDKEIPYSVEVVVEQFKE-DERHVHINAVIYVERDSQKG 254 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQREI 310 I++G+ G +K +S EA+K + + ++ + L +FVKV KDW + QRE+ Sbjct: 255 IIIGRQGMALKKVSTEARKSLEKFFDKKIFLEVFVKVDKDWRNS-----QREL 302 >gi|161507651|ref|YP_001577605.1| GTP-binding protein Era [Lactobacillus helveticus DPC 4571] gi|254783658|sp|A8YVM7|ERA_LACH4 RecName: Full=GTPase Era gi|160348640|gb|ABX27314.1| GTP-binding protein [Lactobacillus helveticus DPC 4571] Length = 301 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 179/299 (59%), Gaps = 10/299 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K+F +SG VAL+G N GKSTL+N VG KV+I ++K QTTR+ + GI + + Sbjct: 2 EEKEF-----KSGFVALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKM 56 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK 128 Q+VF+DTPGIF M + S S++ D+V +V+ K + I +LLKE+ Sbjct: 57 QVVFVDTPGIFKPHSKLDDYMDKASLSSLNDVDLVLFMVEPEEIGKGDQYIANLLKEV-- 114 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + L++NK+D + P +LL + +KL ++ +SAT+G G +D+LN + LP Sbjct: 115 -KVPVFLVINKVDQIHPNKLLLIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYLPE 173 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P Y ADQI+D P + AE+ RE++ +E+P+++ V ++ + ++G +LI I Sbjct: 174 GPQYYGADQITDRPEYFVVAELIREQILRLTSQEVPHATAVAVDQMNKHQNGKLLIEATI 233 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 YVE+ QK I++GK G+ +K I + ++KEI +L + V+L L+VKVQ +W DP Q Sbjct: 234 YVEKDGQKGIIIGKGGKMLKQIGINSRKEIEHLLGEKVNLRLWVKVQHNWRSDPSFLKQ 292 >gi|332686714|ref|YP_004456488.1| GTP-binding protein Era [Melissococcus plutonius ATCC 35311] gi|332370723|dbj|BAK21679.1| GTP-binding protein Era [Melissococcus plutonius ATCC 35311] Length = 300 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 172/278 (61%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +A++G N GKSTL+NR VG KV+I++ K QTTR+ ++GI + +++Q++F+DTPGI Sbjct: 6 KSGFIAIIGRPNVGKSTLLNRIVGQKVAIMSDKAQTTRNKIQGIYTTQKAQLIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ ++S ++ D ++ + ++ +++ + + + + L++NKI Sbjct: 66 HKPKHRLGDFMVETAYSALREVDATLFMISADQKRGKGDDFIIERLKEMQNPVYLVINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ LL E ++ + ++ +SAT+G+ D +++ L +P+ P + DQ++D Sbjct: 126 DKIHPDDLLGIIEDYSQQMTFKEIIPISATEGNNFDHLMDVLVEQMPVGPQYFPEDQVTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ +EIP+S V+ + + ++ + I+ I VER SQK I++ Sbjct: 186 HPEYFIVSELIREKILQLTREEIPHSVAVIVDSMKRDENDKVHIQATIVVERDSQKGIII 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G+ +K + ++A+++I +L+ V+L L+VKVQKDW Sbjct: 246 GNGGKMLKQVGIKARQDIEHLLDDKVYLELWVKVQKDW 283 >gi|222523307|ref|YP_002567777.1| GTP-binding protein Era [Chloroflexus sp. Y-400-fl] gi|222447186|gb|ACM51452.1| GTP-binding protein Era [Chloroflexus sp. Y-400-fl] Length = 469 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/285 (37%), Positives = 164/285 (57%), Gaps = 3/285 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG N GKSTL+N +G KV+IV+ + QTTR VRGI+S QI+F+DTPGI Sbjct: 175 RSGFVALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPGI 234 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 KLM+ L+ T+ +AD++C +VD + + +++ + +L+LNK+ Sbjct: 235 HEPSHRLGKLMVELAERTLPNADVICFMVDISQPPTRLDRMIAQQVQRARGHKLLVLNKV 294 Query: 141 DCVKPERLLEQAEIANK-LVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D KP+R E A + L E +SA + G +L+ + + LP P +Y DQ++ Sbjct: 295 DQ-KPKRPGENYLPAYRELGQWEMEIAISARRRLGLTALLSEISARLPEGPPLYPLDQMT 353 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AE REK +L +E+P++ + E+W+EK+ + IR I VE+ SQK I+ Sbjct: 354 DQTEQQLAAEFVREKALFYLQQEVPHAIAIEVEEWQEKETAT-YIRMTINVEKESQKGIL 412 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +G G +K I A+ I +L +PV+L L+VKV+ +W DP Sbjct: 413 IGAGGGMLKKIGSAARASIERMLGRPVYLDLWVKVRPNWRDDPSA 457 >gi|147677230|ref|YP_001211445.1| GTPase [Pelotomaculum thermopropionicum SI] gi|146273327|dbj|BAF59076.1| GTPase [Pelotomaculum thermopropionicum SI] Length = 300 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/288 (36%), Positives = 171/288 (59%), Gaps = 5/288 (1%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E+K+F RSG VA++G TN GKSTL+N +G KV+I++ K QTTR+ + +++ +++ Sbjct: 2 ENKEF-----RSGFVAIIGRTNVGKSTLLNSLLGRKVAIMSEKPQTTRNKILCVLTREDA 56 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 Q+VFLDTPG K + +++++ T+K D+V +V++ + H ++K+ A Sbjct: 57 QVVFLDTPGFHKPKHKLGEHLVQVALRTLKEVDLVLFLVEAGQPPGPGDHYVIKQFAGLK 116 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + ++L++NKID V+ E LL E + L + VSA G +L + LP P Sbjct: 117 TPVLLVINKIDLVRREELLPLIEQYSGLFGFAEIVPVSALTGENLPRLLEVVVRYLPAGP 176 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 Y D I+D P AE+ REK+ +E+P+S VV E+ +E+ + + +R VIY Sbjct: 177 KYYPEDVITDRPESFIMAELIREKVLHLTSQEVPHSVAVVVEELKERPNNVVAVRAVIYT 236 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 E+ SQK I++GK GQ +K I A++E+ +L ++L L+VKV+ DW Sbjct: 237 EKESQKGILIGKGGQMLKKIGQMAREEMEVLLGSKIYLELWVKVRPDW 284 >gi|242281264|ref|YP_002993393.1| GTP-binding protein Era [Desulfovibrio salexigens DSM 2638] gi|242124158|gb|ACS81854.1| GTP-binding protein Era [Desulfovibrio salexigens DSM 2638] Length = 305 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/288 (36%), Positives = 174/288 (60%), Gaps = 10/288 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VAL+G NAGKSTL+N ++G KV+IV+ K QTTR+ + GI+S++ SQ+VFLDTPGI Sbjct: 8 GWVALIGPPNAGKSTLMNHYLGQKVAIVSPKPQTTRNRISGILSDENSQVVFLDTPGIHR 67 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSRLILI 136 + ++ ++ +W + +AD + ++ D+ ++ + ++K + + +L + Sbjct: 68 MRGKMNRFLLDSAWEALGNADAIVVLFDAALYAAKPHLMEQELAPVVKPVNQSRKKLFVA 127 Query: 137 LN-KIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +N +LL E A +L + E F+ VSA KG G D +L + TLP ++ Sbjct: 128 VNKVDKVKDKAKLLPVMEKAQEL-WPEAEFIPVSALKGDGADVLLEKVIETLPEGAPMFP 186 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 DQ+S +PM AE REKLF+ L +E+PYS+ V E W E+ + +++ I +IY + Sbjct: 187 EDQVSTVPMRFMAAETVREKLFMSLQQELPYSTAVEIEFWTEEPERNLVNIGAIIYTTKK 246 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + K +++GK GQN+K I +A++E+ E+LE V L L+VKV++ W D Sbjct: 247 NHKGMIIGKGGQNLKKIGTQARRELEEMLEMKVMLELWVKVREGWTED 294 >gi|163845608|ref|YP_001633652.1| GTP-binding protein Era [Chloroflexus aurantiacus J-10-fl] gi|163666897|gb|ABY33263.1| GTP-binding protein Era [Chloroflexus aurantiacus J-10-fl] Length = 469 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/285 (37%), Positives = 164/285 (57%), Gaps = 3/285 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG N GKSTL+N +G KV+IV+ + QTTR VRGI+S QI+F+DTPGI Sbjct: 175 RSGFVALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPGI 234 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 KLM+ L+ T+ +AD++C +VD + + +++ + +L+LNK+ Sbjct: 235 HEPSHRLGKLMVELAERTLPNADVICFMVDISQPPTRLDRMIAQQVQRARGHKLLVLNKV 294 Query: 141 DCVKPERLLEQAEIANK-LVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D KP+R E A + L E +SA + G +L+ + + LP P +Y DQ++ Sbjct: 295 DQ-KPKRPGENYLPAYRELGQWEMEIAISARRRLGLTALLSEISARLPEGPPLYPLDQMT 353 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AE REK +L +E+P++ + E+W+EK+ + IR I VE+ SQK I+ Sbjct: 354 DQTEQQLAAEFVREKALFYLQQEVPHAIAIEVEEWQEKETAT-YIRMTINVEKESQKGIL 412 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +G G +K I A+ I +L +PV+L L+VKV+ +W DP Sbjct: 413 IGAGGGMLKKIGSAARASIERMLGRPVYLDLWVKVRPNWRDDPSA 457 >gi|315303200|ref|ZP_07873857.1| GTP-binding protein Era [Listeria ivanovii FSL F6-596] gi|313628427|gb|EFR96903.1| GTP-binding protein Era [Listeria ivanovii FSL F6-596] Length = 301 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 166/279 (59%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T + D++ V+D+ +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE L + E +L+ E+ +SA +G+ ++L+ + L + P Y DQI+D Sbjct: 126 DLISPEELFKLIEQYRELLDFEEIIPISALQGNNVPNLLDQTNANLEIGPMYYPKDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I+ Sbjct: 186 HPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 246 IGKQGQMLKQIGMRARKEIESLLGSKVFLEIWVKVQKNW 284 >gi|295693063|ref|YP_003601673.1| GTP-binding protein era homolog [Lactobacillus crispatus ST1] gi|295031169|emb|CBL50648.1| GTP-binding protein era homolog [Lactobacillus crispatus ST1] Length = 300 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/294 (38%), Positives = 177/294 (60%), Gaps = 10/294 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K+F +SG VALVG N GKSTL+N VG KV+I ++K QTTR+ + GI + E Sbjct: 2 EEKEF-----KSGFVALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEM 56 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK 128 Q+VF+DTPGIF M + S S++ D+V +V+ K + I +LLKE+ Sbjct: 57 QVVFVDTPGIFKPHSKLDDYMDKASVSSLNDVDLVLFMVEPEEMGKGDQYIANLLKEV-- 114 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++L++NK+D + P +LL + +KL ++ +SAT+G G +D+L + LP+ Sbjct: 115 -KVPVLLVINKVDDIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLKTIKEYLPV 173 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P Y ADQI+D P + AE+ RE++ +E+P+++ V + ++G +LI I Sbjct: 174 GPQYYGADQITDRPEYFVVAELIREQILRLTSQEVPHATAVAVDHMNTHQNGKLLIEATI 233 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 YVE+ QK I++GK G+ +K I + +++EI +L + V+L L+VKVQ +W DP Sbjct: 234 YVEKDGQKGIIIGKGGKMLKQIGINSRQEIERLLGEKVNLRLWVKVQHNWRSDP 287 >gi|227878694|ref|ZP_03996608.1| GTP-binding protein [Lactobacillus crispatus JV-V01] gi|256843288|ref|ZP_05548776.1| GTP-binding protein Era [Lactobacillus crispatus 125-2-CHN] gi|256850355|ref|ZP_05555783.1| GTP-binding protein Era [Lactobacillus crispatus MV-1A-US] gi|262046497|ref|ZP_06019459.1| GTP-binding protein Era [Lactobacillus crispatus MV-3A-US] gi|293380657|ref|ZP_06626708.1| GTP-binding protein Era [Lactobacillus crispatus 214-1] gi|312978179|ref|ZP_07789923.1| GTP-binding protein Era [Lactobacillus crispatus CTV-05] gi|227861709|gb|EEJ69314.1| GTP-binding protein [Lactobacillus crispatus JV-V01] gi|256614708|gb|EEU19909.1| GTP-binding protein Era [Lactobacillus crispatus 125-2-CHN] gi|256712752|gb|EEU27745.1| GTP-binding protein Era [Lactobacillus crispatus MV-1A-US] gi|260573368|gb|EEX29926.1| GTP-binding protein Era [Lactobacillus crispatus MV-3A-US] gi|290922785|gb|EFD99736.1| GTP-binding protein Era [Lactobacillus crispatus 214-1] gi|310894897|gb|EFQ43967.1| GTP-binding protein Era [Lactobacillus crispatus CTV-05] Length = 300 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/294 (38%), Positives = 177/294 (60%), Gaps = 10/294 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K+F +SG VALVG N GKSTL+N VG KV+I ++K QTTR+ + GI + E Sbjct: 2 EEKEF-----KSGFVALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEM 56 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK 128 Q+VF+DTPGIF M + S S++ D+V +V+ K + I +LLKE+ Sbjct: 57 QVVFVDTPGIFKPHSKLDDYMDKASVSSLNDVDLVLFMVEPEEMGKGDQYIANLLKEV-- 114 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++L++NK+D + P +LL + +KL ++ +SAT+G G +D+L + LP+ Sbjct: 115 -KVPVLLVINKVDEIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLKTIKEYLPV 173 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P Y ADQI+D P + AE+ RE++ +E+P+++ V + ++G +LI I Sbjct: 174 GPQYYGADQITDRPEYFVVAELIREQILRLTSQEVPHATAVAVDHMNTHQNGKLLIEATI 233 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 YVE+ QK I++GK G+ +K I + +++EI +L + V+L L+VKVQ +W DP Sbjct: 234 YVEKDGQKGIIIGKGGKMLKQIGINSRQEIERLLGEKVNLRLWVKVQHNWRSDP 287 >gi|299144155|ref|ZP_07037235.1| GTP-binding protein Era [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518640|gb|EFI42379.1| GTP-binding protein Era [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 296 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/281 (37%), Positives = 170/281 (60%), Gaps = 3/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N VG K+S +++K QTTR+ + I ++++ Q++FLDTPGI Sbjct: 3 KSGFVTIIGRPNVGKSTLLNCIVGQKISAISNKAQTTRNKITFIYTDEKMQVIFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 K+ M+++S ST+ D++ +VD +++ + ++KE+ +++ + ++L++N Sbjct: 63 QMPKNKLGDYMLKVSESTLSEVDVITYIVDCSKKIGKLDNYIIKELKEKNLKTPIVLLVN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V E L E ++ + + ++ +SA K G + L L +P+ P Y D + Sbjct: 123 KIDEVAKEELFEIIKMYDDIGIFKEIIPISALKNDGVESYLKTLAKYIPIGPMYYPEDMV 182 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D P EI REK L +EIP+ V EK E+K+ I I VIY+ER S KK Sbjct: 183 TDHPEKFIVGEIIREKALRFLDEEIPHGIAVSIEKMRERKEKEITDIEAVIYIERESHKK 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GKNGQ +K I A+ EI +L+ V+L L+VKV+K+W Sbjct: 243 IVIGKNGQMLKKIGSAARTEIENLLDTKVNLNLWVKVEKNW 283 >gi|312143999|ref|YP_003995445.1| GTP-binding protein Era [Halanaerobium sp. 'sapolanicus'] gi|311904650|gb|ADQ15091.1| GTP-binding protein Era [Halanaerobium sp. 'sapolanicus'] Length = 293 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 104/280 (37%), Positives = 169/280 (60%), Gaps = 5/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTLVN VG K++I++ + QTTR+ ++ I +E++ QI+F+DTPGI Sbjct: 4 KSGFVTVIGRPNVGKSTLVNNLVGEKINIISPRPQTTRNSIKAIYTEEKGQIIFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A++ K M+ ++S++ DI+ ++D+ N + +I +I ++NKI Sbjct: 64 HQARNKLDKFMLEEAYSSLDGIDIIIFILDASTYWGKNDQMIYDQIKSSKKNIIYVMNKI 123 Query: 141 DCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + + LL Q + + K+ E+ +SA D +L + S LP P Y D I+ Sbjct: 124 DKISNKDLLLRQKKYSQKVG--EEVIPISALNNKNIDTLLEEIFSYLPEGPQYYPEDMIT 181 Query: 200 D-LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 D + F F AE+ REK+F +E+PY + V+ E+ +E+ + IR IYVE+ S K I Sbjct: 182 DQIERFVF-AELIREKIFYLTREEVPYGAAVLVEEVKERDNEDYYIRANIYVEKKSHKGI 240 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GKNG+ IK I EA+KEI ++++ V+L L+VKV K+W Sbjct: 241 IIGKNGKMIKRIGKEARKEIEDLMQTKVYLDLWVKVLKNW 280 >gi|312131517|ref|YP_003998857.1| gtp-binding protein era [Leadbetterella byssophila DSM 17132] gi|311908063|gb|ADQ18504.1| GTP-binding protein Era [Leadbetterella byssophila DSM 17132] Length = 295 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 104/284 (36%), Positives = 168/284 (59%), Gaps = 7/284 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS----EKESQIVF 74 + R+G +++VG N GKSTL+N+ VG K+SI+T K QTTR + GIV+ E + Q+V+ Sbjct: 3 DHRAGFISIVGKPNVGKSTLMNQLVGEKLSIITSKAQTTRHRIMGIVNGETPEFDFQMVY 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPGI HK M+ +I+ D++ V D + K + D+++ + +S +I Sbjct: 63 SDTPGIIKPVYELHKSMMEFVHGSIEDGDVILFVTDIYE--KYDEEDVIERLKNATSPII 120 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 LI+NKID KPE + E+ + + + +SA +G G +++ + LP+ P + Sbjct: 121 LIINKIDLAKPEDIEEKIQHWKAVFQPTEILTLSALQGEGVPQLMDRILHYLPVHPPYFP 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D+++D P F AE+ REK+FL+ KE+PYS VV ++E D I I IYVER + Sbjct: 181 KDELTDKPERFFAAEMIREKIFLNYKKEVPYSCEVVITAFKESDD-LIRISSEIYVERST 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 Q+ I+LG G+ IK + +EA++E+ + + V L ++KV+ DW Sbjct: 240 QRAILLGHKGERIKKVGIEAREEMEKFFGKKVFLEQYIKVEPDW 283 >gi|302345899|ref|YP_003814252.1| GTP-binding protein Era [Prevotella melaninogenica ATCC 25845] gi|302149370|gb|ADK95632.1| GTP-binding protein Era [Prevotella melaninogenica ATCC 25845] Length = 293 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/283 (38%), Positives = 166/283 (58%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG K+SI T K QTTR + GIV+ +++QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M++ S S + ADI+ V D + + N+ D L++++K S +IL++NKI Sbjct: 63 LKPNYKMQEMMLQFSESALADADILLYVTDVVEDPEKNM-DFLEKVSKMSIPVILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + L+ + +SA G D +L + LP +P + DQ++D Sbjct: 122 DESDQKTLGNLVTKWHGLLPNAEILPISAKNKFGVDILLKRVHELLPESPAFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ + KEIPYS VV E+++E D I I +IYVER SQK I++ Sbjct: 182 KPAKFFVSEIIREKILRYYDKEIPYSVEVVIERFKE-DDRQIHISAIIYVERSSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G +K +S EA+K + ++ + L FVKV KDW + K Sbjct: 241 GHQGMALKKVSTEARKSLERFFDKKIFLETFVKVDKDWRNSQK 283 >gi|288803891|ref|ZP_06409316.1| GTP-binding protein Era [Prevotella melaninogenica D18] gi|288333656|gb|EFC72106.1| GTP-binding protein Era [Prevotella melaninogenica D18] Length = 293 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/283 (38%), Positives = 166/283 (58%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG K+SI T K QTTR + GIV+ +++QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGEKLSIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M++ S S + ADI+ V D + + N+ D L++++K S +IL++NKI Sbjct: 63 LKPNYKMQEMMLQFSESALADADILLYVTDVVEDPEKNM-DFLEKVSKMSIPVILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + L+ + +SA G D +L + LP +P + DQ++D Sbjct: 122 DESDQKTLGNLVTKWHGLLPNAEILPISAKNKFGVDILLRRVHELLPESPAFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ + KEIPYS VV E+++E D I I +IYVER SQK I++ Sbjct: 182 KPAKFFVSEIIREKILRYYDKEIPYSVEVVIERFKE-DDRQIHISAIIYVERSSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G +K +S EA+K + ++ + L FVKV KDW + K Sbjct: 241 GHQGMALKKVSTEARKSLERFFDKKIFLETFVKVDKDWRNSQK 283 >gi|289434744|ref|YP_003464616.1| GTP-binding protein Era [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170988|emb|CBH27530.1| GTP-binding protein Era [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633219|gb|EFS00091.1| GTP-binding protein Era [Listeria seeligeri FSL N1-067] Length = 301 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 165/279 (59%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T + D++ V+D+ +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE L + E +L+ E+ +SA +G+ ++L + L + P Y DQI+D Sbjct: 126 DLISPEELFKLIEQYRELLDFEEIIPISALQGNNVPNLLEQTNANLEVGPMYYPKDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I+ Sbjct: 186 HPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 246 IGKQGQMLKQIGMRARKEIESLLGSKVFLEIWVKVQKNW 284 >gi|85860146|ref|YP_462348.1| GTP-binding protein [Syntrophus aciditrophicus SB] gi|123738843|sp|Q2LVR8|ERA_SYNAS RecName: Full=GTPase Era gi|85723237|gb|ABC78180.1| GTP-binding protein [Syntrophus aciditrophicus SB] Length = 306 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 166/286 (58%), Gaps = 1/286 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + ++G N GKSTL+N +G K++I+THK QTTR+ + GI + +Q +F+DTPGI Sbjct: 14 KSGFIGIIGRPNVGKSTLLNGILGEKLAIITHKPQTTRNRIMGIRNADNAQFIFVDTPGI 73 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +A ++LM+R + T +DI+ LVV++ + + +++ + + + LILNKI Sbjct: 74 HSASTPLNRLMVRTATETFTDSDILLLVVEAGQAVHPEDLPIIESLKESGTISFLILNKI 133 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++ E+LL + L + +SA G G +L+ L LP P + D ++D Sbjct: 134 DLIRKEQLLPLMDAYRNLHSFAELIPISALTGEGIPLLLDELWKYLPEGPQYFPDDMMTD 193 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 AEI REK+ L HKEIPYSS VV + ++E + +++ I I VE+ SQK I+ Sbjct: 194 QSERFLAAEIIREKILLLTHKEIPYSSAVVVDAFKEDEARNLIRISATINVEKESQKGII 253 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +GK G +K I A+ ++ + + L LFV+V+KDW DP+ Sbjct: 254 IGKKGTMLKEIGTRARVDMEKFFATRIFLELFVRVRKDWTKDPRML 299 >gi|16800567|ref|NP_470835.1| GTP-binding protein Era [Listeria innocua Clip11262] gi|21263591|sp|Q92BP8|ERA_LISIN RecName: Full=GTPase Era gi|16413972|emb|CAC96730.1| lin1499 [Listeria innocua Clip11262] gi|313618893|gb|EFR90758.1| GTP-binding protein Era [Listeria innocua FSL S4-378] gi|313623743|gb|EFR93885.1| GTP-binding protein Era [Listeria innocua FSL J1-023] Length = 301 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 166/279 (59%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVFTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T + D++ V+D+ +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE L++ E +L+ E+ +SA +G+ ++L + L + P Y DQI+D Sbjct: 126 DLISPEDLIKLIEQYRELMDFEEIIPISALEGNNVPNLLEQTNANLEIGPMYYPKDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I+ Sbjct: 186 HPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 246 IGKQGQMLKQIGMRARKEIESLLGSKVFLEIWVKVQKNW 284 >gi|73662498|ref|YP_301279.1| GTP-binding protein Era [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82592828|sp|Q49Y10|ERA_STAS1 RecName: Full=GTPase Era gi|72495013|dbj|BAE18334.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 299 Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKST VNR +G K++I++ K QTTR+ ++G+++++++QI+FLDTPGI Sbjct: 5 KSGFISIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTQEDAQIIFLDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+R++ +T+ D + +V+ + ++ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMRVATNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKTIKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E K + + +SA +G D +N + S LP P Y DQISD Sbjct: 125 DLVHPDELMPRIEKYKKYMDFTEIVPISALEGLNVDHFINVIKSYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P E+ REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVGELIREKILHLTSEEIPHAIGVNVDRMIKEDEDRVRIEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQKDW Sbjct: 245 GKGGKKLKEVGKRARQDIERLLGSKVYLELWVKVQKDW 282 >gi|78045135|ref|YP_359291.1| GTP-binding protein Era [Carboxydothermus hydrogenoformans Z-2901] gi|123576937|sp|Q3AEZ3|ERA_CARHZ RecName: Full=GTPase Era gi|77997250|gb|ABB16149.1| GTP-binding protein Era [Carboxydothermus hydrogenoformans Z-2901] Length = 298 Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 177/282 (62%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N+ VG K++I++ K QTTR+ +R +++ ++ QI+F+DTPG+ Sbjct: 4 KSGFVSIVGRPNVGKSTLLNQVVGTKIAIMSDKPQTTRNKIRAVLTSEKGQIIFIDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M++ + +++ D++ VV+++ + + LLK +A+ + +IL++NKI Sbjct: 64 QKPRNKLGEFMLKQALTSLDEVDVLLYVVEANSPIGPQENYLLKTLAEVKTPIILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKL---VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D VK ++E +A ++ + + KT+ +SA G G +++ + LP P Y Q Sbjct: 124 DVVK---MIEAQTLARQIESRLKVAKTYYISALNGTGVSELVEGIFELLPEGPPYYPEGQ 180 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQK 256 ++D P AE RE++ +EIP+S VV E+ + +++ ++ + VIYVER SQK Sbjct: 181 VTDYPERFIIAEYIREQILHLTREEIPHSVAVVVEEIKPRENSNTVYVSAVIYVERESQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GKNGQ +K I A+ EI +L ++L L+VKV++DW Sbjct: 241 GIIIGKNGQMLKEIGQRARLEIERLLGSNIYLDLWVKVKEDW 282 >gi|189425186|ref|YP_001952363.1| GTP-binding protein Era [Geobacter lovleyi SZ] gi|259645944|sp|B3E422|ERA_GEOLS RecName: Full=GTPase Era gi|189421445|gb|ACD95843.1| GTP-binding protein Era [Geobacter lovleyi SZ] Length = 296 Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 102/280 (36%), Positives = 173/280 (61%), Gaps = 5/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V+++G N GKSTL+NR +G K+ V+ K QTTR+++RGI+S++ SQIVF+DTPGI Sbjct: 7 KAGFVSIIGRPNVGKSTLLNRILGEKIVAVSDKPQTTRNVIRGILSDETSQIVFVDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNK 139 A+ ++ M+ + + + D++ LVVD+ ++++ +K+I +K + + L+LNK Sbjct: 67 HTARTRINRAMVDAAMTVVTGIDLMLLVVDATQKIE---ETFIKDICSKAGAPIYLVLNK 123 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P E+L E +L + +SA G + +++ + LP ++ D + Sbjct: 124 IDQVTPKEKLFTVIEGYTRLYDFPEIIPISAQSGSNIERLVDLVREHLPEGEALFPDDIL 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +DLP AE+ REK+F ++E+PY + VV E + E+++G + I I VER S K I Sbjct: 184 TDLPEKFIVAELIREKVFRLTNREVPYGTAVVVEAFAERENGLVAINATIMVERDSHKGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I +A+++I +L V+L LFV+VQ+ W Sbjct: 244 IIGKKGVMLKKIGEQARRDIERLLGTKVYLELFVQVQERW 283 >gi|116872893|ref|YP_849674.1| GTP-binding protein Era [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461073|sp|A0AIR3|ERA_LISW6 RecName: Full=GTPase Era gi|116741771|emb|CAK20895.1| GTP-binding protein Era [Listeria welshimeri serovar 6b str. SLCC5334] Length = 301 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 165/279 (59%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T + D++ V+D+ +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE L + E +L+ E+ +SA +G+ ++L + L + P Y DQI+D Sbjct: 126 DLISPEDLFKLIEQYRELLDFEEIIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I+ Sbjct: 186 HPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 246 IGKQGQMLKQIGMRARKEIESLLGSKVFLEIWVKVQKNW 284 >gi|315282359|ref|ZP_07870786.1| GTP-binding protein Era [Listeria marthii FSL S4-120] gi|313613991|gb|EFR87708.1| GTP-binding protein Era [Listeria marthii FSL S4-120] Length = 301 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 165/279 (59%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T + D++ V+D+ +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE L + E +L+ E+ +SA +G+ ++L + L + P Y DQI+D Sbjct: 126 DLIAPEDLFKLIEQYRELMDFEEIIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I+ Sbjct: 186 HPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 246 IGKQGQMLKQIGMRARKEIESLLGSKVFLEIWVKVQKNW 284 >gi|219850626|ref|YP_002465059.1| GTP-binding protein Era [Chloroflexus aggregans DSM 9485] gi|219544885|gb|ACL26623.1| GTP-binding protein Era [Chloroflexus aggregans DSM 9485] Length = 468 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 158/287 (55%), Gaps = 1/287 (0%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG VALVG N GKSTL+N +G KV+IV+ + QTTR VRGI+S QI+F+DT Sbjct: 171 DQWRSGFVALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDT 230 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI KLM+ L+ T+ +AD++C +VD + + +E+ + +L+L Sbjct: 231 PGIHEPNHRLGKLMVELAERTLPNADVICFMVDISQPPSRLDRTIAREVQRARGHKLLVL 290 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D + +L E +SA + G +L+ + LP P +Y DQ Sbjct: 291 NKVDQKPRQPGANYLPAYRELGEWEMEIAISARRRLGLTALLSEIGRRLPSGPPLYPLDQ 350 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+D AE REK +L +E+P++ V E+W EK+ + IR I VE+ SQK Sbjct: 351 ITDQTEQQLAAEFVREKALFYLQQEVPHAIAVEVEEWIEKETAT-YIRMTINVEKESQKG 409 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I++G G +K I A+ I +L +PV+L L+VKV+ +W DP Sbjct: 410 ILIGAGGSMLKKIGSAARASIERMLGRPVYLDLWVKVRHNWRDDPSA 456 >gi|189500921|ref|YP_001960391.1| GTP-binding protein Era [Chlorobium phaeobacteroides BS1] gi|189496362|gb|ACE04910.1| GTP-binding protein Era [Chlorobium phaeobacteroides BS1] Length = 306 Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 165/294 (56%), Gaps = 11/294 (3%) Query: 16 VQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + DN+ C VA++G NAGKSTL+NR + K+SIVT K QTTR + GI QI+ Sbjct: 1 MSDNTSFSCGYVAIIGPPNAGKSTLLNRLLNHKLSIVTPKPQTTRKKITGIYHSDRCQIL 60 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD----LLKE-IAK 128 FLDTPGI H+ M+ + ST+K AD++ ++ + ++ + D L +E + Sbjct: 61 FLDTPGIMKPMQELHQSMLTATRSTLKEADVIITMIPASKKNGLFDQDFTELLFREWLTN 120 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +I LNK D + E I + EK VSA KG G DD++ L LP Sbjct: 121 TGKPVIAALNKSDFLNAGEQEEALRIIKERWNPEKALAVSALKGSGTDDLIEALIPLLPA 180 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LI 244 + +Y D +S P F +EI REK+FL +EIPYS+ VV ++++E+ + LI Sbjct: 181 SAPLYPEDILSTAPERFFVSEIIREKIFLFYGQEIPYSTEVVVDEFKEQHENDSSRKDLI 240 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R I VER +QK I++GK G +K + + A+ EI E L +PV L LFVKV+ DW Sbjct: 241 RCSIVVERDTQKHILIGKKGSALKKLGMAARTEIEEFLGRPVFLELFVKVRPDW 294 >gi|239618466|ref|YP_002941788.1| GTP-binding protein Era [Kosmotoga olearia TBF 19.5.1] gi|239507297|gb|ACR80784.1| GTP-binding protein Era [Kosmotoga olearia TBF 19.5.1] Length = 305 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 105/284 (36%), Positives = 169/284 (59%), Gaps = 2/284 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 + + RSG V+LVG N GKS+LVN+ VG KV+IV+ KVQTTR+ + GIV+ + Q++F D Sbjct: 4 KSDYRSGIVSLVGKPNVGKSSLVNQLVGEKVAIVSDKVQTTRNRIGGIVTTERGQVIFYD 63 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGI +++++ S + +D++ ++D +K + + K + + + L+ Sbjct: 64 TPGIHKPLHKLGGYLVKITVSALNGSDLIAAILDISDGIKKSDFLVAKHVNSSNIPVFLV 123 Query: 137 LNKIDCVKP-ERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NKID VK +++ E E KL +EKTF VSA G G + L + +P P +Y Sbjct: 124 INKIDVVKTRKKITEFLEEGTKLFKNVEKTFPVSAITGEGIKEFLEAVIERMPPGPPLYP 183 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REK+ L +E+P+S V E++ +++G++ IR I VERP+ Sbjct: 184 EDVITDRSARFMASEIIREKILLLTKEEVPHSVGVSIEEFTYRENGTLYIRGEIVVERPT 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G IK I A++++ + + V L LFVKV++ W Sbjct: 244 QKAIIIGKGGTMIKKIGTLARQDMEYLFDTKVFLDLFVKVRRKW 287 >gi|75761897|ref|ZP_00741822.1| GTP-binding protein era [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899466|ref|YP_002447877.1| GTP-binding protein Era [Bacillus cereus G9842] gi|74490605|gb|EAO53896.1| GTP-binding protein era [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541393|gb|ACK93787.1| GTP-binding protein Era [Bacillus cereus G9842] Length = 301 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ +E +SQ++F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K DIV +V++ +++++ + + L++NKI Sbjct: 67 HKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE+LLE + KL + +SA G+ D ++ + LP P Y +Q++D Sbjct: 127 DQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKKYLPEGPQYYPDNQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S VV + ++++ G++ I I VER SQK I++ Sbjct: 187 HPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERASQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V L ++VKVQKDW Sbjct: 247 GKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDW 284 >gi|77919006|ref|YP_356821.1| GTP-binding protein Era [Pelobacter carbinolicus DSM 2380] gi|77545089|gb|ABA88651.1| GTP-binding protein Era [Pelobacter carbinolicus DSM 2380] Length = 303 Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 102/280 (36%), Positives = 169/280 (60%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL+N +G K++I ++K QTTR+ + GI ++ ++Q++FLDTPG+ Sbjct: 12 RSGFVAIIGRPNVGKSTLLNSVLGQKIAITSNKPQTTRNRILGIYNQPDAQVLFLDTPGV 71 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK ++ M+ + ST D+V ++V+++ L +L+++++ + +IL++NK+ Sbjct: 72 HKAKGMLNRYMVDQALSTCGDVDVVLMLVEANDRLGGGDDYVLEQVSRSNVPVILVINKV 131 Query: 141 DCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + +PE L K F E VSA G G + +++ L LP P Y+ D ++ Sbjct: 132 DLIHRPELLPLIEAYTGKYAFSE-IIPVSALTGEGTEQLVSSLVKYLPEGPRYYAEDMVT 190 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-ILIRQVIYVERPSQKKI 258 DLP AE+ RE++ H+EIP+ V + +EEK + + ++I IYV R KKI Sbjct: 191 DLPERFIVAEMIREQILKQTHQEIPHGVAVEVDHFEEKPEKNLVVIEACIYVSREGHKKI 250 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +LG+ G+ IK+I A+ +I +L V L L VKV+K+W Sbjct: 251 VLGRGGEKIKSIGKAARYDIERMLGTRVFLDLLVKVEKNW 290 >gi|296504794|ref|YP_003666494.1| GTP-binding protein Era [Bacillus thuringiensis BMB171] gi|296325846|gb|ADH08774.1| GTP-binding protein Era [Bacillus thuringiensis BMB171] Length = 301 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 168/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ +E ++Q++F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K DIV +V++ +++++ + + L++NKI Sbjct: 67 HKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE+LLE + KL + +SA G+ D ++ + + LP P Y +Q++D Sbjct: 127 DQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKNYLPEGPQYYPENQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S VV + ++++ G++ I I VER SQK I++ Sbjct: 187 HPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERASQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V L ++VKVQKDW Sbjct: 247 GKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDW 284 >gi|326203513|ref|ZP_08193377.1| GTP-binding protein Era [Clostridium papyrosolvens DSM 2782] gi|325986333|gb|EGD47165.1| GTP-binding protein Era [Clostridium papyrosolvens DSM 2782] Length = 298 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKSTL+N G K++I++ K QTTR+ +RG+++ KE Q++ +DTPGI Sbjct: 4 KSGFVSVIGRPNVGKSTLLNTITGQKIAIMSDKPQTTRNTIRGVITNKECQLILIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ TIK D+V +V+++ + ++++++ + + + LILNK+ Sbjct: 64 HKPKTKLGEYMVNVASETIKEVDLVLFLVEANAQPGAQDINIIQQLKQVKTPVFLILNKV 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E+LL + +KL+ + +SA K G D +L +P P +S D ++D Sbjct: 124 DLVSKEKLLAIIDSYSKLMNFKAIIPISALKNDGIDIILKEALDLIPEGPQFFSEDMLTD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ L+L E+P+ V ++E++DG I I+ IY E+ + K I++ Sbjct: 184 QPEKVIAAEMIREKVLLNLDDEVPHGVGVEVTSFKEREDGLINIQATIYCEKSTHKGIII 243 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K I A+ EI +L+ + L L+VKV+ DW Sbjct: 244 GKQGSMLKKIGSAARYEIERLLDTKIFLELWVKVKPDW 281 >gi|83589464|ref|YP_429473.1| GTP-binding protein Era [Moorella thermoacetica ATCC 39073] gi|83572378|gb|ABC18930.1| GTP-binding protein Era [Moorella thermoacetica ATCC 39073] Length = 301 Score = 188 bits (477), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 160/278 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG L+G NAGKSTL+NR VG KV+I++ K QTTR+ + G+++ QIVFLDTPGI Sbjct: 6 RSGFAGLIGRPNAGKSTLLNRLVGRKVAIMSDKPQTTRNKILGVLTATAYQIVFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M+ ++ +T+ D+V VVD+ E ++ + + +ILILNK+ Sbjct: 66 HKPRHQLGEYMVAVARNTLAEVDVVLYVVDAAEEPGAGEEYIISRLKEVDVPVILILNKM 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E L+ + E + + VSA G D + + + + LP P Y D ++D Sbjct: 126 DLVAGETLIRREEFFRARLDVAAVRAVSALVGTNLDTLPDLISTYLPPGPQYYPPDMVTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ RE++ +E+P++ VV E+ E+ + + + VIYVER SQK I++ Sbjct: 186 QPEKFVMAELIREQVLRATREEVPHAVAVVVEEIAERPNDYLYVDAVIYVERDSQKGIII 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G+ GQ +K I +A++E+ +L + L L V+V+K+W Sbjct: 246 GEGGQRLKEIGSQARREMEALLGNKIFLNLRVRVKKNW 283 >gi|51245541|ref|YP_065425.1| GTP-binding protein Era-like protein [Desulfotalea psychrophila LSv54] gi|50876578|emb|CAG36418.1| probable GTP-binding protein Era homolog [Desulfotalea psychrophila LSv54] Length = 313 Score = 188 bits (477), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 162/282 (57%), Gaps = 9/282 (3%) Query: 10 NEHK---DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 NE+K DF+ + +SG VA+VG NAGKSTL+N+ +G K+SIVT K QTTR+ + GIV+ Sbjct: 4 NEYKTLDDFLGKDVKSGMVAIVGPPNAGKSTLMNQLLGQKISIVTSKPQTTRNRILGIVN 63 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHD 121 + QIV LDTPG+ A + + M+R++ ++ D V +VD + L + Sbjct: 64 DDAYQIVLLDTPGLHKADEPLNIEMMRVALESLSEVDAVLFLVDVSLPLPPKALAKQREE 123 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 L + K S IL+LNK+D + ++LL E KL + +SA G G D++L Sbjct: 124 LAGYMEKIESPAILVLNKVDLIDKQKLLPMIESYAKLFPFKAVVPISALNGDGADNLLKE 183 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDG 240 + +P+ P + D +D AEI REK+FL +E+PYS+ + E + E+++ Sbjct: 184 ILELIPVGPRYFPEDIPTDATERFLAAEIVREKVFLLTGQELPYSAATLVESFKEDEQKK 243 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEIL 282 I I I VERPSQK +++GK GQ +K I A+K+I +L Sbjct: 244 LITIHATIVVERPSQKGMIIGKGGQKLKQIGTAARKDIEALL 285 >gi|323483769|ref|ZP_08089149.1| hypothetical protein HMPREF9474_00898 [Clostridium symbiosum WAL-14163] gi|323692742|ref|ZP_08106970.1| GTP-binding protein Era [Clostridium symbiosum WAL-14673] gi|323402960|gb|EGA95278.1| hypothetical protein HMPREF9474_00898 [Clostridium symbiosum WAL-14163] gi|323503184|gb|EGB19018.1| GTP-binding protein Era [Clostridium symbiosum WAL-14673] Length = 300 Score = 188 bits (477), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 104/298 (34%), Positives = 168/298 (56%), Gaps = 10/298 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +QDN +SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + +++ QI+FL Sbjct: 1 MQDNLKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M+ ++ T+K D++ +V+ + + +++ K + ++L Sbjct: 61 DTPGIHKAKNKLGEYMVSVAEHTLKEVDVILWLVEPSTFIGAGERHIAEQLNKVKTPVML 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID VK + +L + + VSA K DDV + + LP P Y Sbjct: 121 VINKIDTVKKDEILTFIAAYKDICNFAEIIPVSALKEINIDDVKDCIFKYLPEGPQFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D PM AE+ REK L EIP+ VV ++ +E+ +G I I I ER S Sbjct: 181 DTVTDQPMRQIAAELIREKALRMLDDEIPHGIAVVIDQMKERPNGLIDIDATIVCERESH 240 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW----------GHDPK 303 K I++GKNG +K I A+ EI +++ V+L L+VKV+K+W G++PK Sbjct: 241 KGIIIGKNGGKLKKIGTSARTEIQNLMDTQVNLKLWVKVRKEWRDSDLYMKNYGYNPK 298 >gi|310659078|ref|YP_003936799.1| GTP-binding protein era [Clostridium sticklandii DSM 519] gi|308825856|emb|CBH21894.1| GTP-binding protein Era [Clostridium sticklandii] Length = 305 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 167/281 (59%), Gaps = 1/281 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG V+++G N GKSTL+N VG K++I++ K QTTR+ +R I ++ E QIVF+DTP Sbjct: 10 NFKSGFVSIIGRPNVGKSTLMNSLVGEKIAIMSDKPQTTRNQIRAIYNDDEMQIVFMDTP 69 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI ++ M+++S S+++ D++ VVD + + D+++ + S+ IL +N Sbjct: 70 GIQKPQNRLGDYMLKVSHSSMRDTDVILFVVDDSKSIGKKDSDIIETLKTNKSKKILAIN 129 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + E L++ + +K+ ++ VSA KG + ++ L + P + D I Sbjct: 130 KIDKLSKEELMDLINMYSKIGIFDEIVPVSALKGTNNNTLIKVLAKYMEAGPLYFPVDMI 189 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D P +EI REKL ++ +EIP+ V E +++KD I+ I VIY ER S KK Sbjct: 190 TDQPEKVLVSEIIREKLLMYTDQEIPHGIAVDIEAMKKRKDKDIIDISAVIYCERESHKK 249 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++G G+ IK I A++E+ IL + L L+VKV+++W Sbjct: 250 IIIGSQGRKIKGIGKAAREELEMILGSKIFLELWVKVKENW 290 >gi|313675799|ref|YP_004053795.1| GTP-binding protein era [Marivirga tractuosa DSM 4126] gi|312942497|gb|ADR21687.1| GTP-binding protein Era [Marivirga tractuosa DSM 4126] Length = 294 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/284 (38%), Positives = 171/284 (60%), Gaps = 6/284 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ ++G V++VG N GKSTL+N VG ++SI+T K QTTR + GI+S + QIV+ D Sbjct: 3 ENQHKAGFVSIVGKPNVGKSTLMNALVGERLSIITSKAQTTRHRIMGILSGADFQIVYSD 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLIL 135 TPGI + + H M+R + ++ ADI+ V D + K D+L + K S +IL Sbjct: 63 TPGILSPQYELHNSMMRFVKAALEDADIMLFVTDLYE--KYEEGDVLIDRIKNSGVPIIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 I+NKID K + ++ + +++ + MVSA + D + N L LP+ P + Sbjct: 121 IMNKIDQSKGSQAQDKMKYWAEIIEPDHQIMVSALEKVNIDGLFNKLMDLLPVHPPYFPK 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 ++++D P F EI REK+F + KE+PYS VV +++E D +I+ IR IYVER S Sbjct: 181 EEMTDKPEKFFVEEIIREKIFQNYKKEVPYSCEVVVTEFKE--DETIIRIRAEIYVERKS 238 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G+ IK + +E++K++ + +HL FVKV++DW Sbjct: 239 QKGIIIGKGGEAIKKVGIESRKDLETFFNKQIHLETFVKVEQDW 282 >gi|30022378|ref|NP_834009.1| GTP-binding protein Era [Bacillus cereus ATCC 14579] gi|218232187|ref|YP_002369107.1| GTP-binding protein Era [Bacillus cereus B4264] gi|29897936|gb|AAP11210.1| GTP-binding protein [Bacillus cereus ATCC 14579] gi|218160144|gb|ACK60136.1| GTP-binding protein Era [Bacillus cereus B4264] gi|326942082|gb|AEA17978.1| GTP-binding protein Era [Bacillus thuringiensis serovar chinensis CT-43] Length = 301 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ +E ++Q++F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K DIV +V++ +++++ + + L++NKI Sbjct: 67 HKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE+LLE + KL + +SA G+ D ++ + LP P Y +Q++D Sbjct: 127 DQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKKYLPEGPQYYPENQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S VV + ++++ G++ I I VER SQK I++ Sbjct: 187 HPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERASQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V L ++VKVQKDW Sbjct: 247 GKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDW 284 >gi|161760697|ref|YP_253264.2| GTP-binding protein Era [Staphylococcus haemolyticus JCSC1435] gi|317374941|sp|Q4L6R7|ERA_STAHJ RecName: Full=GTPase Era Length = 299 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 165/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+++ ++QI+FLDTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFMNRVIGHKIAIMSDKAQTTRNKIQGVMTRNDAQIIFLDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+R++ +T+ D + +V+ + E+ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEEIGRGDEYIMEMLKNVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E K + + +SA +G D ++ L + LP P Y DQISD Sbjct: 125 DLVHPDALMPRIEQYQKYMNFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +EI REK+ +EIP++ V ++ ++ D + + IYVER SQK I++ Sbjct: 185 HPEQFVVSEIIREKILHLTSEEIPHAIGVNVDRMIKENDERVRVEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V+L L+VKVQKDW Sbjct: 245 GKGGKKLKEVGKRARHDIEMLLGSKVYLELWVKVQKDW 282 >gi|323343320|ref|ZP_08083547.1| GTP-binding protein Era [Prevotella oralis ATCC 33269] gi|323095139|gb|EFZ37713.1| GTP-binding protein Era [Prevotella oralis ATCC 33269] Length = 305 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 109/278 (39%), Positives = 161/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG K+SI T K QTTR + GIV+ ++QIVF DTPG+ Sbjct: 15 KAGFVNIVGNPNVGKSTLMNQLVGEKISIATFKAQTTRHRIMGIVNTDDAQIVFSDTPGV 74 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D + NI + L ++ K + ++L++NKI Sbjct: 75 LKPNYKLQESMLAFSESALTDADVLLYVTDVVEAPEKNI-EFLDKVKKMTIPVLLLINKI 133 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L E ++L+ + +SA G D +L + LP +P + +Q++D Sbjct: 134 DQTDQKTLGNIVEKWHQLLPNAEILPISAQNKFGTDMLLKRIKELLPESPPYFDKEQLTD 193 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS VV E ++E + I I VIYVER SQK I++ Sbjct: 194 KPAKFFVSEIIREKILLYYDKEIPYSVEVVVESFKEDRK-HIHINAVIYVERNSQKGIII 252 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + +PV+L FVKV KDW Sbjct: 253 GHQGMALKKVSTEARKALERFFGKPVYLETFVKVDKDW 290 >gi|206971303|ref|ZP_03232254.1| GTP-binding protein Era [Bacillus cereus AH1134] gi|206734075|gb|EDZ51246.1| GTP-binding protein Era [Bacillus cereus AH1134] Length = 301 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ +E ++Q++F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K DIV +V++ +++++ + + L++NKI Sbjct: 67 HKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE+LLE + KL + +SA G+ D ++ + LP P Y +Q++D Sbjct: 127 DQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKKYLPEGPQYYPDNQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S VV + ++++ G++ I I VER SQK I++ Sbjct: 187 HPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERASQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V L ++VKVQKDW Sbjct: 247 GKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDW 284 >gi|299535811|ref|ZP_07049132.1| GTP-binding protein Era-like protein [Lysinibacillus fusiformis ZC1] gi|298729011|gb|EFI69565.1| GTP-binding protein Era-like protein [Lysinibacillus fusiformis ZC1] Length = 305 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 172/284 (60%), Gaps = 2/284 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ +SG ++++G N GKST +NR +G K++I++ K QTTR+ V+G+++ +SQ++F+D Sbjct: 5 KNGYKSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTDDSQMIFID 64 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGI K M+++S +T++ D++ +V++ ++L +L+ +A + + L+ Sbjct: 65 TPGIHKPKHKLGDFMLKVSKNTLREVDVIMFMVNAEQKLGKGDEFILEMLAGNPTPVFLV 124 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID + P+ L+ E + + +SA +G+ +++L L LP P Y AD Sbjct: 125 INKIDAIHPDELMGIIESYKERYDFAEIVPISALQGNNVENLLVTLAKYLPEGPQYYPAD 184 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--WEEKKDGSILIRQVIYVERPS 254 Q++D P +E+ REK+ +EIP+S VV +K +E+ + I + I VER S Sbjct: 185 QVTDHPERFIISELIREKVLHLTREEIPHSIAVVIDKIRRDEENEDKIHVAATIIVERDS 244 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G +K + A+K+I +L V+L L+VKVQKDW Sbjct: 245 QKGIVIGKRGALLKEVGTRARKDIEMLLGSKVYLELWVKVQKDW 288 >gi|222151466|ref|YP_002560622.1| hypothetical protein MCCL_1219 [Macrococcus caseolyticus JCSC5402] gi|222120591|dbj|BAH17926.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 300 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 168/287 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N+ +G KV+I++ K QTTR+ V+G+++ ++SQI+F+DTPGI Sbjct: 6 KSGFVAIIGRPNVGKSTFMNKVLGQKVAIMSDKAQTTRNKVQGVLTTEQSQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T++ D + +V+ + +++ + + + L+LNKI Sbjct: 66 HKPKHMLGDYMMKVAKNTLREVDAILFMVNVEESIGRGDEFIIELLKNNRTPIFLVLNKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ L+++ E L+ + +SA +G+ D ++ + +P P Y DQISD Sbjct: 126 DKIHPDELIKEIEKYKDLLPFAEIVPISALQGNNVDHLVKVIERYMPEGPMYYPKDQISD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK +EIP++ V EK ++ + + I IY+ER SQK I++ Sbjct: 186 HPEEFIVAELIREKALHLTSQEIPHAIGVQVEKMVKESEERVHIEATIYIERESQKGIII 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 GK G +K I A+K+I +L V+L L+VKVQKDW + P Q Sbjct: 246 GKQGSMLKKIGQLARKDIEMLLGSKVYLELWVKVQKDWRNKPNFIRQ 292 >gi|16803502|ref|NP_464987.1| GTP-binding protein Era [Listeria monocytogenes EGD-e] gi|46907690|ref|YP_014079.1| GTP-binding protein Era [Listeria monocytogenes serotype 4b str. F2365] gi|47093486|ref|ZP_00231249.1| GTP-binding protein Era [Listeria monocytogenes str. 4b H7858] gi|47095413|ref|ZP_00233023.1| GTP-binding protein Era [Listeria monocytogenes str. 1/2a F6854] gi|224501598|ref|ZP_03669905.1| GTP-binding protein Era [Listeria monocytogenes FSL R2-561] gi|226224063|ref|YP_002758170.1| GTP binding protein [Listeria monocytogenes Clip81459] gi|254824479|ref|ZP_05229480.1| GTP-binding protein Era [Listeria monocytogenes FSL J1-194] gi|254827750|ref|ZP_05232437.1| GTP-binding protein Era [Listeria monocytogenes FSL N3-165] gi|254829779|ref|ZP_05234434.1| GTP-binding protein Era [Listeria monocytogenes 10403S] gi|254852087|ref|ZP_05241435.1| GTP-binding protein Era [Listeria monocytogenes FSL R2-503] gi|254898372|ref|ZP_05258296.1| GTP-binding protein Era [Listeria monocytogenes J0161] gi|254912136|ref|ZP_05262148.1| GTP-binding protein Era [Listeria monocytogenes J2818] gi|254936464|ref|ZP_05268161.1| GTP-binding protein Era [Listeria monocytogenes F6900] gi|255521277|ref|ZP_05388514.1| GTP-binding protein Era [Listeria monocytogenes FSL J1-175] gi|284801849|ref|YP_003413714.1| GTP-binding protein Era [Listeria monocytogenes 08-5578] gi|284994991|ref|YP_003416759.1| GTP-binding protein Era [Listeria monocytogenes 08-5923] gi|300765605|ref|ZP_07075584.1| GTP-binding protein Era [Listeria monocytogenes FSL N1-017] gi|21263579|sp|Q8Y750|ERA_LISMO RecName: Full=GTPase Era gi|67460115|sp|Q71ZK8|ERA_LISMF RecName: Full=GTPase Era gi|259645949|sp|C1KVA9|ERA_LISMC RecName: Full=GTPase Era gi|16410891|emb|CAC99540.1| lmo1462 [Listeria monocytogenes EGD-e] gi|46880959|gb|AAT04256.1| GTP-binding protein Era [Listeria monocytogenes serotype 4b str. F2365] gi|47016234|gb|EAL07157.1| GTP-binding protein Era [Listeria monocytogenes str. 1/2a F6854] gi|47018162|gb|EAL08932.1| GTP-binding protein Era [Listeria monocytogenes str. 4b H7858] gi|225876525|emb|CAS05234.1| Putative GTP binding protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600129|gb|EEW13454.1| GTP-binding protein Era [Listeria monocytogenes FSL N3-165] gi|258605386|gb|EEW17994.1| GTP-binding protein Era [Listeria monocytogenes FSL R2-503] gi|258609056|gb|EEW21664.1| GTP-binding protein Era [Listeria monocytogenes F6900] gi|284057411|gb|ADB68352.1| GTP-binding protein Era [Listeria monocytogenes 08-5578] gi|284060458|gb|ADB71397.1| GTP-binding protein Era [Listeria monocytogenes 08-5923] gi|293590107|gb|EFF98441.1| GTP-binding protein Era [Listeria monocytogenes J2818] gi|293593717|gb|EFG01478.1| GTP-binding protein Era [Listeria monocytogenes FSL J1-194] gi|300513706|gb|EFK40774.1| GTP-binding protein Era [Listeria monocytogenes FSL N1-017] gi|328465505|gb|EGF36734.1| GTPase Era [Listeria monocytogenes 1816] Length = 301 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 164/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T + D++ V+D+ +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE L + E L+ ++ +SA +G+ ++L + L + P Y DQI+D Sbjct: 126 DLIAPEDLFKLIEQYRDLMDFDEIIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I+ Sbjct: 186 HPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 246 IGKQGQMLKQIGMRARKEIERLLGSKVFLEIWVKVQKNW 284 >gi|224500518|ref|ZP_03668867.1| GTP-binding protein Era [Listeria monocytogenes Finland 1988] Length = 299 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 164/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T + D++ V+D+ +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE L + E L+ ++ +SA +G+ ++L + L + P Y DQI+D Sbjct: 126 DLIAPEDLFKLIEQYRDLMDFDEIIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I+ Sbjct: 186 HPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 246 IGKQGQMLKQIGMRARKEIERLLGSKVFLEIWVKVQKNW 284 >gi|309789730|ref|ZP_07684310.1| GTP-binding protein Era [Oscillochloris trichoides DG6] gi|308228216|gb|EFO81864.1| GTP-binding protein Era [Oscillochloris trichoides DG6] Length = 466 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 165/281 (58%), Gaps = 2/281 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG N GKSTL+N +G KV+IV+ + QTTR VRGI+S ++Q+VF+DTPGI Sbjct: 173 RSGFVALVGKPNVGKSTLLNTLLGQKVTIVSPRAQTTRVPVRGILSRPDAQVVFIDTPGI 232 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ L+ T+ +AD++C +VD + + +++ + + +L+LNK+ Sbjct: 233 HQPSHKLGKFMVELAERTLPNADVICFMVDISQPPSQLDRSIAEQVQRARAHKLLLLNKV 292 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P R E L + +SA +G G +L+ + + LP +Y +Q++D Sbjct: 293 D-IPPRRGTTYLEEYRSLGTWDMEMAISAQRGQGLSSLLDEIVARLPNGQPLYPNEQVTD 351 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AE+ REK+ + +E+P++ V ++WE K+ +I IR I VE+ SQK I++ Sbjct: 352 QSEQQLAAELVREKVLYFIQQEVPHAVAVEVDEWETKEQ-AIYIRMTINVEKESQKGILI 410 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 G G +K I A+++I ++++ V L L+VKV+++W D Sbjct: 411 GAGGAMLKRIGSAARRDIERMVDKKVFLELWVKVRENWRDD 451 >gi|220928031|ref|YP_002504940.1| GTP-binding protein Era [Clostridium cellulolyticum H10] gi|254783293|sp|B8I736|ERA_CLOCE RecName: Full=GTPase Era gi|219998359|gb|ACL74960.1| GTP-binding protein Era [Clostridium cellulolyticum H10] Length = 298 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKSTL+N G K++I+++K QTTR+ +RG+++ KE Q++ +DTPGI Sbjct: 4 KSGFVSVIGRPNVGKSTLLNTITGQKIAIMSNKPQTTRNTIRGVITNKECQLILIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ TIK D++ +V+++ + ++++++ + + + LILNK+ Sbjct: 64 HKPKTKLGEYMVNVASETIKEVDLILFLVEANTQPGAQDVNIIQQLKQIKTPVFLILNKV 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + ++LL + +KL+ + +SA K G D +L +P P +S D ++D Sbjct: 124 DLISKDKLLAIIDSYSKLMDFKAIIPISALKNDGIDLILKEALDYIPEGPQFFSEDMLTD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ L+L E+P+ V ++E++DG I I+ IY E+ S K I++ Sbjct: 184 QPEKVIAAEMIREKVLLNLDDEVPHGVGVEVTSFKEREDGLINIQATIYCEKSSHKGIII 243 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K I A+ EI +L+ + L L+VKV+ DW Sbjct: 244 GKQGNMLKKIGSAARYEIERLLDTKIFLELWVKVKPDW 281 >gi|163942056|ref|YP_001646940.1| GTP-binding protein Era [Bacillus weihenstephanensis KBAB4] gi|163864253|gb|ABY45312.1| GTP-binding protein Era [Bacillus weihenstephanensis KBAB4] Length = 301 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ +E +SQ+VF+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K DIV +V++ +++++ + + L++NKI Sbjct: 67 HKPKHKLGDFMVKMAQTTLKEVDIVLFMVNATEGYGRGEEFIIEKLQETKQPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE+LLE + KL + +SA G+ + ++ + LP P Y +Q++D Sbjct: 127 DQLHPEQLLELIDQYRKLYEFAEIVPISALDGNNVEALIGAIKKYLPEGPQYYPDNQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +E+P+S VV + ++++ G++ I I VER SQK I++ Sbjct: 187 HPERFIISELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERASQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V L ++VKVQKDW Sbjct: 247 GKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDW 284 >gi|255027717|ref|ZP_05299703.1| GTP-binding protein Era [Listeria monocytogenes FSL J2-003] Length = 301 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 164/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T + D++ V+D+ +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIVEKLKNVQTPVFLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE L + E L+ ++ +SA +G+ ++L + L + P Y DQI+D Sbjct: 126 DLIAPEDLFKLIEQYRDLMDFDEIIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I+ Sbjct: 186 HPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 246 IGKQGQMLKQIGMRARKEIERLLGSKVFLEIWVKVQKNW 284 >gi|319900092|ref|YP_004159820.1| GTP-binding protein Era [Bacteroides helcogenes P 36-108] gi|319415123|gb|ADV42234.1| GTP-binding protein Era [Bacteroides helcogenes P 36-108] Length = 293 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 161/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D E +D ++++A+ ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALTDADVLLYVTDV-VETPDKHNDFVEKVAQMEVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L+E E +L+ + +SAT D V+ + LP +P + DQ +D Sbjct: 122 DLTNQEKLVELVEAWKELLPKAEIVPISATTKFNVDYVMKRIKEFLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E+ I I VIYVER SQK I++ Sbjct: 182 KPARFFVTEIIREKILLYYDKEIPYSVEVVVEQFKEEA-KKIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++E+ + + + L FVKV KDW Sbjct: 241 GKQGKALKKVATEARRELEKFFGKTIFLETFVKVDKDW 278 >gi|315607419|ref|ZP_07882415.1| GTP-binding protein Era [Prevotella buccae ATCC 33574] gi|315250851|gb|EFU30844.1| GTP-binding protein Era [Prevotella buccae ATCC 33574] Length = 293 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 164/278 (58%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ +++QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M+ S S + AD++ V D + N+ D L ++ K S ++L++NKI Sbjct: 63 LKPNYKMQEMMLAFSESALADADVLLYVTDVVENPEKNV-DFLDKVKKMSIPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++L + E + L+ + +SA G D ++ + LP +P + DQ++D Sbjct: 122 DESDQKKLGDLVEKWHSLLPNAEILPISAKNKFGVDMLMRRIKELLPESPAYFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS V E+++E + I I VIYVER SQK I++ Sbjct: 182 KPAKFFVSEIVREKILLYYDKEIPYSVEVSVERFKE-DEHKIHINVVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + + ++ + L FVKV KDW Sbjct: 241 GHQGVALKKVSSEARKALEKFFDKKIFLETFVKVDKDW 278 >gi|217964392|ref|YP_002350070.1| GTP-binding protein Era [Listeria monocytogenes HCC23] gi|290894223|ref|ZP_06557192.1| GTP-binding protein Era [Listeria monocytogenes FSL J2-071] gi|254783659|sp|B8DE49|ERA_LISMH RecName: Full=GTPase Era gi|217333662|gb|ACK39456.1| GTP-binding protein Era [Listeria monocytogenes HCC23] gi|290556220|gb|EFD89765.1| GTP-binding protein Era [Listeria monocytogenes FSL J2-071] gi|307571043|emb|CAR84222.1| GTP-binding protein (Bex protein) [Listeria monocytogenes L99] Length = 301 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 164/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T + D++ V+D+ +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE L + E L+ ++ +SA +G+ ++L + L + P Y DQI+D Sbjct: 126 DLIAPEDLFKLIEQYRDLMEFDEIIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I+ Sbjct: 186 HPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 246 IGKQGQMLKQIGMRARKEIERLLGSKVFLEVWVKVQKNW 284 >gi|169829166|ref|YP_001699324.1| GTP-binding protein Era-like protein (Bex protein) [Lysinibacillus sphaericus C3-41] gi|254783660|sp|B1HTJ0|ERA_LYSSC RecName: Full=GTPase Era gi|168993654|gb|ACA41194.1| GTP-binding protein era-like protein (Bex protein) [Lysinibacillus sphaericus C3-41] Length = 305 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 170/280 (60%), Gaps = 2/280 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKST +NR +G K++I++ K QTTR+ V+G+++ +SQ++F+DTPGI Sbjct: 9 KSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTTDSQMIFIDTPGI 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T++ D++ +V++ ++L +L+ +A S+ + L++NKI Sbjct: 69 HKPKHKLGDFMLKVAKNTLREVDVIMFMVNAEQKLGKGDEFILEMLAGNSTPVFLVINKI 128 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ LL E + + +SA +G+ + +L+ L LP P Y ADQ++D Sbjct: 129 DQIHPDELLGIIESYKERYEFAEIIPISALQGNNVESLLDTLPKYLPEGPQYYPADQVTD 188 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--WEEKKDGSILIRQVIYVERPSQKKI 258 P E+ REK+ +EIP+S VV +K +E+ + I + I VER SQK I Sbjct: 189 HPERFIIYELIREKVLHLTREEIPHSIAVVIDKIRRDEENNDKIHVAATIMVERDSQKGI 248 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K + A+K+I +L V+L L+VKVQKDW Sbjct: 249 VIGKRGALLKEVGTRARKDIEMLLGSKVYLELWVKVQKDW 288 >gi|303233733|ref|ZP_07320387.1| GTP-binding protein Era [Finegoldia magna BVS033A4] gi|302495167|gb|EFL54919.1| GTP-binding protein Era [Finegoldia magna BVS033A4] Length = 294 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 174/279 (62%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G +N GKSTL+NR +G K++I++ K QTTR+ ++ I +++ Q +FLDTPGI Sbjct: 3 KSGFVSVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ M+++S ST+ D++ +VD+ E+ ++++++ ++++IL++NKI Sbjct: 63 QTPKNKLGDYMLKVSMSTLNEVDVITYIVDTTEEIGKLDSEIIEKLRLVNTKIILLINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + +++ E E+ K+ E+ +SA G + L L +TLP P Y D ++D Sbjct: 123 DKIASDKVDELVEMYTKVGIFEQIIPISALNGDNVEGYLTSLRNTLPEGPMYYDKDSVTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P+ E+ REK ++L E+P+ + EK++E++D +++ I I VE+ S K ++ Sbjct: 183 QPIRQIVQELIREKALINLSDELPHGIAITIEKFKERQDKNLIDIDATIIVEKKSHKGMV 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G IK I +A+ +I ++L+ V+L L+VK+ ++W Sbjct: 243 IGKKGSMIKKIGTDARIDIEQLLDTKVNLKLWVKIDEEW 281 >gi|307299162|ref|ZP_07578963.1| GTP-binding protein Era [Thermotogales bacterium mesG1.Ag.4.2] gi|306914958|gb|EFN45344.1| GTP-binding protein Era [Thermotogales bacterium mesG1.Ag.4.2] Length = 300 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 172/281 (61%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+N +G K++IV+ K QTTR+ + GI++ K+ QIVF DTPGI Sbjct: 4 KSGTVALVGKPNVGKSTLINTIIGEKIAIVSDKPQTTRNRIGGILTTKKGQIVFYDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + +++++ S++ +D++ ++VD L+ + + + + + L +NK+ Sbjct: 64 HKPLHRLGQYILKVATSSLAGSDLLLVIVDPTDGLRESDRLVANHVNQSRIPVFLAINKV 123 Query: 141 DCVKPERLLEQAEIANKLVF--IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D K ERLL+ + + +F I +TF++SA KG G +++L + LP ++ D I Sbjct: 124 DEYKNERLLQDFQAKAEELFNDIRRTFLISAKKGDGVEELLETIFDFLPEGKMLFPEDLI 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D +E+ REK+ + +EIP+S VV +++ + +G+IL IR + VER SQK Sbjct: 184 TDRSSRFMASEVIREKVLQNTRQEIPHSVGVVVQEFSD--EGNILKIRADVIVERSSQKP 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+LGK G IK I EA+K++ I +Q + L LFVKV++ W Sbjct: 242 IILGKGGSMIKIIGTEARKDLEYIFDQKIFLDLFVKVREKW 282 >gi|254932647|ref|ZP_05266006.1| GTP-binding protein Era [Listeria monocytogenes HPB2262] gi|293584206|gb|EFF96238.1| GTP-binding protein Era [Listeria monocytogenes HPB2262] gi|328474974|gb|EGF45768.1| GTPase Era [Listeria monocytogenes 220] gi|332311903|gb|EGJ24998.1| GTP-binding protein Era [Listeria monocytogenes str. Scott A] Length = 301 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 164/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T + D++ V+D+ +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE L + E L+ ++ +SA +G+ ++L + L + P Y DQI+D Sbjct: 126 DLIAPEDLFKLIEQYRDLMDFDEIIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I+ Sbjct: 186 HPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 246 IGKQGQMLKQIGMGARKEIERLLGSKVFLEIWVKVQKNW 284 >gi|302380500|ref|ZP_07268965.1| GTP-binding protein Era [Finegoldia magna ACS-171-V-Col3] gi|302311443|gb|EFK93459.1| GTP-binding protein Era [Finegoldia magna ACS-171-V-Col3] Length = 294 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 174/279 (62%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G +N GKSTL+NR +G K++I++ K QTTR+ ++ I +++ Q +FLDTPGI Sbjct: 3 KSGFVSVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ M+++S ST+ D++ +VD+ E+ ++++++ ++++IL++NKI Sbjct: 63 QTPKNKLGDYMLKVSMSTLNEVDVITYIVDTTEEIGKLDSEIIEKLRLVNTKIILLINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + +++ E E+ K+ E+ +SA G + L L +TLP P Y D ++D Sbjct: 123 DKIASDKVNELVEMYTKVGIFEQIIPISALNGDNIEGYLTSLRNTLPDGPMYYDKDSVTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P+ E+ REK ++L E+P+ + EK++E++D +++ I I VE+ S K ++ Sbjct: 183 QPIRQIVQELIREKALINLSDELPHGIAITIEKFKERQDKNLIDIDATIIVEKKSHKGMV 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G IK I +A+ +I ++L+ V+L L+VK+ ++W Sbjct: 243 IGKKGSMIKKIGTDARIDIEQLLDTKVNLKLWVKIDEEW 281 >gi|134300318|ref|YP_001113814.1| GTP-binding protein Era [Desulfotomaculum reducens MI-1] gi|134053018|gb|ABO50989.1| GTP-binding protein Era [Desulfotomaculum reducens MI-1] Length = 302 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 162/281 (57%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + RSG VALVG N GKSTL+N+ VG KV+I++ K QTTR + +++ ++Q+VFLDT Sbjct: 6 EGYRSGFVALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLTRNDAQMVFLDT 65 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI + + M+ ++ +K D+ +V++ + +++ + + L+L Sbjct: 66 PGIHKPRHKLGEYMVDVALGALKEVDVALFLVEASEAPGPGDQYIAEQLKGIKTPVFLML 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D ++ E +LE+ L+ + VSA G + +++ + LP P Y AD Sbjct: 126 NKVDLIQREAVLERILQYKDLLPFAEVIPVSALAGENVERLIDTIIKYLPEGPQYYPADM 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P AEI REK+ +EIP+S VV E+ +E+ +G + + VIY ER SQK Sbjct: 186 VTDRPERFIMAEIIREKVLHLTSEEIPHSVAVVVEQIKERNNGVVAVSAVIYTERDSQKA 245 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K + +++EI +L V L L+VKV+KDW Sbjct: 246 ILIGKGGNMLKEVGRRSREEIENLLGSKVFLELWVKVKKDW 286 >gi|258511948|ref|YP_003185382.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478674|gb|ACV58993.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 298 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 164/288 (56%), Gaps = 1/288 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N VG KV+I++++ QTTR+ +RG+ + + SQ++F+DTPGI Sbjct: 4 KSGFVALIGRPNVGKSTLLNALVGQKVAIMSNRPQTTRNRIRGVRTTETSQMIFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + T+ D++ LVVD+ + ++ K++ + + +IL LNK+ Sbjct: 64 HKPKHRLGEYMVDAALKTLNEVDVIVLVVDASSPVHPTEQEIAKQLERVRTPVILALNKV 123 Query: 141 DCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D ++ L L++ E L E+ +SA +G D + + LP P Y D I+ Sbjct: 124 DALEDRALVLKRIEEYQALRPFEEYVPISALRGEQVDLLAEIIEKRLPEGPKYYPDDMIT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P +EI REK+ + E+P+S V E E + ++ + VIY ER SQK I+ Sbjct: 184 DQPESFIISEIVREKVLMLTRDEVPHSVMVAVEHMERRSSDTLYVSAVIYTERESQKAIL 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GK GQ +K + A+ E+ + ++L L+VKV++DW + P Q Sbjct: 244 IGKQGQMLKRVGEMARHELEALFGNRIYLELWVKVKRDWRNKPALLHQ 291 >gi|313905842|ref|ZP_07839200.1| GTP-binding protein Era [Eubacterium cellulosolvens 6] gi|313469356|gb|EFR64700.1| GTP-binding protein Era [Eubacterium cellulosolvens 6] Length = 304 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 162/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N +G K++I + K QTTR+ ++ I + QIVFLDTPGI Sbjct: 7 KSGFVALIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNRIQTIYNSDRGQIVFLDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ + S++K+ D V +++ + +++ + K +IL++NKI Sbjct: 67 HKAKNKLGEYMVYAAESSLKNVDAVMWLIEPGAYVGAAEQHIVQMLDKAGLPVILVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VK + + E + K E VSA + D +++ L S LP P + D ++D Sbjct: 127 DKVKKDVVAETIQTYGKFTRFEDIVAVSAKQSTNLDGLIDSLFSVLPYGPRFFDEDTVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P+ AE+ REK L +EIP+ VV +K +E+ DG I I I ER S K I+ Sbjct: 187 QPVRQVAAEMIREKTLRSLGEEIPHGIAVVIDKMKERPDGKITDIEATIICERDSHKGIV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G+ +K I EA+ +I ++LE V+L ++VKV+KDW Sbjct: 247 IGKQGRMLKKIGSEARVDIEQMLETKVNLKIWVKVRKDW 285 >gi|218288620|ref|ZP_03492897.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius LAA1] gi|218241277|gb|EED08452.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius LAA1] Length = 298 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 163/288 (56%), Gaps = 1/288 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N VG KV+I++++ QTTR+ +RG+ + + SQ++F+DTPGI Sbjct: 4 KSGFVALIGRPNVGKSTLLNALVGQKVAIMSNRPQTTRNRIRGVRTTETSQMIFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + T+ D++ LVVD+ + ++ K++ + + +IL LNK+ Sbjct: 64 HKPKHRLGEYMVDAALKTLNEVDVIVLVVDASSPVHPTEEEIAKQLERVRTPVILALNKV 123 Query: 141 DCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + L L++ E L E+ +SA KG D + + LP P Y D I+ Sbjct: 124 DALDDRALVLKRIEEYQALRPFEEYVPISALKGEQVDLLAELIERRLPEGPKYYPDDMIT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P +EI REK+ + E+P+S V E E + ++ + VIY ER SQK I+ Sbjct: 184 DQPESFIISEIVREKVLMLTRDEVPHSVMVAVEHMERRASDTLYVSAVIYTERESQKAIL 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GK GQ +K + A+ E+ + ++L L+VKV++DW + P Q Sbjct: 244 IGKQGQMLKRVGELARHELEALFGNRIYLELWVKVKRDWRNKPALLHQ 291 >gi|289550662|ref|YP_003471566.1| GTP-binding protein Era [Staphylococcus lugdunensis HKU09-01] gi|315658157|ref|ZP_07911029.1| GTP-binding protein Era [Staphylococcus lugdunensis M23590] gi|289180194|gb|ADC87439.1| GTP-binding protein Era [Staphylococcus lugdunensis HKU09-01] gi|315496486|gb|EFU84809.1| GTP-binding protein Era [Staphylococcus lugdunensis M23590] Length = 299 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 167/281 (59%), Gaps = 6/281 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 K M+R++ +T+ D + +V+ + ++ I D+L+ + + + L+L Sbjct: 65 HKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMDMLRNV---KTPVFLVL 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID V P+ L+ + E K + + +SA +G D ++ L S LP P Y DQ Sbjct: 122 NKIDLVHPDSLMPRIEAYQKYMNFTEIVPISALEGLNVDHFIDVLKSHLPEGPKYYPDDQ 181 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ISD P +EI REK+ +EIP++ V ++ ++ + + I IYVER SQK Sbjct: 182 ISDHPEQFVVSEIIREKILHLTSEEIPHAIGVNVDRMIKENEDRVRIEATIYVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K + A+ +I +L V+L L+VKVQKDW Sbjct: 242 IVIGKGGKKLKEVGKRARHDIEMLLGSKVYLELWVKVQKDW 282 >gi|56963446|ref|YP_175177.1| Era, Era/TrmE family GTP-binding protein [Bacillus clausii KSM-K16] gi|81822138|sp|Q5WHD9|ERA_BACSK RecName: Full=GTPase Era gi|56909689|dbj|BAD64216.1| Era/TrmE family GTP-binding protein Era [Bacillus clausii KSM-K16] Length = 303 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 173/283 (61%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKSTL+NR +G K++I++ K QTTR+ V+G+++ ++Q+VF+DTPGI Sbjct: 9 KSGFVSIIGRPNVGKSTLLNRVIGQKIAIMSDKPQTTRNKVQGVLTRDDAQLVFMDTPGI 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T++ D++ VV++ + +++ + + + + L++NKI Sbjct: 69 HKPKHRLGDFMMKVAKNTLREVDLILYVVEADAKFGPGEQYIIERLQETKTPVFLLINKI 128 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V PE LL+ ++ + +SA +G+ ++ + + P Y ADQ++D Sbjct: 129 DKVSPEELLKVIDLYKDRYPFAEIIPISALEGNNVPTLVEQIVEHMEEGPQYYPADQVTD 188 Query: 201 LPMFHFTAEITREKLFLHLHK-EIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 P AE+ REK+ LHL K EIP+S VV E+ +++ +G + + + VER SQK I+ Sbjct: 189 HPERFIIAELIREKV-LHLTKEEIPHSVAVVIEQIKKRDNGKVYVGATVIVERSSQKGII 247 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 +GK+G +K + A+ +I +L V+L L+VKVQKDW + P Sbjct: 248 IGKHGAMLKEVGQLARSDIEALLGSSVYLELWVKVQKDWRNRP 290 >gi|295424887|ref|ZP_06817602.1| GTP-binding protein Era [Lactobacillus amylolyticus DSM 11664] gi|295065453|gb|EFG56346.1| GTP-binding protein Era [Lactobacillus amylolyticus DSM 11664] Length = 302 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 107/284 (37%), Positives = 171/284 (60%), Gaps = 5/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG KV+I ++K QTTR+ + GI + + Q+VF+DTPGI Sbjct: 8 KSGFVAIVGRPNVGKSTLMNRLVGEKVAITSNKPQTTRNRISGIYTSDDMQVVFVDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILN 138 F + M + S+S++ D+V +V+ K + + DLL+++ + LI+N Sbjct: 68 FKPHSKLDEYMDKASYSSLNDVDLVMFMVEPDEAGKDDKFVADLLQKV---KVPVFLIIN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D + P++LL + KL + VSAT+G G D+L L LP P Y +DQI Sbjct: 125 KVDEIHPDKLLPIIDSYRKLGDFAEFLPVSATEGIGIPDLLTALNKYLPEGPQYYGSDQI 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P + AE+ RE++ +E+P+++ V ++ ++ G + I IYVER QK I Sbjct: 185 TDRPEYFVVAELIREQILQLTAQEVPHATAVAVDRMNQRIKGKLQIEATIYVERDGQKGI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 ++GK G+ +K I + +++ I +L + V+L L+VKVQ +W DP Sbjct: 245 IIGKGGKMLKQIGINSRRAIENLLGEKVNLRLWVKVQHNWRSDP 288 >gi|288924557|ref|ZP_06418494.1| GTP-binding protein Era [Prevotella buccae D17] gi|288338344|gb|EFC76693.1| GTP-binding protein Era [Prevotella buccae D17] Length = 293 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 163/278 (58%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ +++QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTEDTQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M+ S S + AD++ V D N+ D L ++ K S ++L++NKI Sbjct: 63 LKPNYKMQEMMLAFSESALADADVLLYVTDVVENPGKNV-DFLDKVKKMSIPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++L + E + L+ + +SA G D ++ + LP +P + DQ++D Sbjct: 122 DESDQKKLGDLVEKWHSLLPNAEILPISAKNKFGVDMLMRRIKELLPESPAYFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS V E+++E + I I VIYVER SQK I++ Sbjct: 182 KPAKFFVSEIVREKILLYYDKEIPYSVEVSVERFKE-DEHKIHINVVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + + ++ + L FVKV KDW Sbjct: 241 GHQGVALKKVSSEARKALEKFFDKKIFLETFVKVDKDW 278 >gi|184155316|ref|YP_001843656.1| GTP-binding protein [Lactobacillus fermentum IFO 3956] gi|227514585|ref|ZP_03944634.1| GTP-binding protein Era [Lactobacillus fermentum ATCC 14931] gi|260662170|ref|ZP_05863066.1| GTP-binding protein Era [Lactobacillus fermentum 28-3-CHN] gi|183226660|dbj|BAG27176.1| GTP-binding protein [Lactobacillus fermentum IFO 3956] gi|227086996|gb|EEI22308.1| GTP-binding protein Era [Lactobacillus fermentum ATCC 14931] gi|260553553|gb|EEX26445.1| GTP-binding protein Era [Lactobacillus fermentum 28-3-CHN] Length = 301 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 161/281 (57%), Gaps = 2/281 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VAL+G N GKSTL+N VG KV+I+++ QTTR+ ++GI + E+QIVF+DTP Sbjct: 5 NYKSGFVALIGRPNVGKSTLLNYMVGQKVAIMSNVAQTTRNKIQGIYTSDEAQIVFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI + M R + S + D + VV ++ + + +++ + K + L++N Sbjct: 65 GIHKPQTRLGDFMERSALSALDEVDAILFVVPANEKRGAGDNFIIERLKKVQQPIYLVVN 124 Query: 139 KIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V P L + A+ L F +K VSA +G+ + ++N L LP P Y ADQ Sbjct: 125 KIDQVNPNDLPDIIAQYEGALPF-KKVVPVSALQGNNVNTLINDLVDQLPTGPQYYPADQ 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +SD P AE+ REK+FL+ +E+P+S + + + D +I + I VERP QK Sbjct: 184 VSDHPERFVIAEMIREKVFLNTREEVPHSVAIDVTSIQREDDETIHVSANIIVERPGQKG 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L L+VKV W Sbjct: 244 IIIGKGGSMLKKIGTAARQDIQALLGDKVFLQLWVKVVPGW 284 >gi|169824433|ref|YP_001692044.1| GTP-binding protein [Finegoldia magna ATCC 29328] gi|167831238|dbj|BAG08154.1| GTP-binding protein [Finegoldia magna ATCC 29328] Length = 294 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 173/279 (62%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G +N GKSTL+NR +G K++I++ K QTTR+ ++ I +++ Q +FLDTPGI Sbjct: 3 KSGFVSVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ M+++S ST+ D++ +VD+ E+ ++++++ ++++IL++NKI Sbjct: 63 QTPKNKLGDYMLKVSMSTLNEVDVITYIVDTTEEIGKLDSEIIEKLRLVNTKIILLINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + +++ E E+ K+ E+ +SA G + L L +TLP P Y D ++D Sbjct: 123 DKIASDKVNELVEMYTKVGIFEQIIPISALNGDNIEGYLTSLRNTLPDGPMYYDKDSVTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P+ E+ REK ++L E+P+ + EK++E++D ++ I I VE+ S K ++ Sbjct: 183 QPIRQIVQELIREKALINLSDELPHGIAITIEKFKERQDKKLIDIDATIIVEKKSHKGMV 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G IK I +A+ +I ++L+ V+L L+VK+ ++W Sbjct: 243 IGKKGSMIKKIGTDARIDIEQLLDTKVNLKLWVKIDEEW 281 >gi|294501286|ref|YP_003564986.1| GTP-binding protein Era [Bacillus megaterium QM B1551] gi|295706633|ref|YP_003599708.1| GTP-binding protein Era [Bacillus megaterium DSM 319] gi|294351223|gb|ADE71552.1| GTP-binding protein Era [Bacillus megaterium QM B1551] gi|294804292|gb|ADF41358.1| GTP-binding protein Era [Bacillus megaterium DSM 319] Length = 301 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 164/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ +E ++QIVF+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTEDQAQIVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D++ ++++ L +++ + + + L++NKI Sbjct: 67 HKPKHKLGDFMMKVAQNTLKEVDLILFMINATEGLGRGDEFIIERLKDTKTPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ L L + +SA +G+ + +L+ + LP P Y ADQ++D Sbjct: 127 DEIHPDELFSIITNYKDLYPFAEIVPISALQGNNVERLLDQIKQRLPEGPQYYPADQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P E+ REK+ +EIP+S VV + + + +G++ + I VER SQK I++ Sbjct: 187 HPERFIITELIREKVLHATREEIPHSIAVVMDSMQRRDNGAVYVGATIIVERDSQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + +A+ +I +L V L L+VKVQKDW Sbjct: 247 GKQGKMLKEVGRKARADIEALLGSKVFLELWVKVQKDW 284 >gi|160901780|ref|YP_001567361.1| GTP-binding protein Era [Petrotoga mobilis SJ95] gi|160359424|gb|ABX31038.1| GTP-binding protein Era [Petrotoga mobilis SJ95] Length = 306 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 109/287 (37%), Positives = 170/287 (59%), Gaps = 2/287 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D+ +SG VAL G N GKSTL+N +G KV IV+ K QTTR+ V I++E QIVF+D Sbjct: 3 NDSFKSGFVALAGKPNVGKSTLINALLGQKVVIVSDKTQTTRNRVNCILTEDHYQIVFVD 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGI + M+ ++ + +K D++ ++D+ L+ + + + + K IL+ Sbjct: 63 TPGIHKPIRKIGEYMVNIAINALKGVDLILFIIDAKDGLRNSDLRVTEIVDKSKIPTILL 122 Query: 137 LNKIDCVK-PERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D VK E++ L +I + I KT +SA G ++ + LP P Y Sbjct: 123 VNKVDLVKDKEKINLMTEKIQSLCSNIVKTIEISALTGKNLSELKQSIIDLLPEGPQYYP 182 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D P +E+ REK+F +EIP+SS VV E+ +E+++G + +R IYVE+ S Sbjct: 183 EDMITDKPSRFIISELIREKIFHLTKEEIPHSSGVVVEELKERENGVLYVRAEIYVEKKS 242 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GKNG IK I A+++I E+ E+ V+L L+VKV++ W D Sbjct: 243 QKPIIIGKNGSMIKKIGQLARQDIEELFERKVYLDLYVKVREKWRDD 289 >gi|23099406|ref|NP_692872.1| GTP-binding protein [Oceanobacillus iheyensis HTE831] gi|81746143|sp|Q8EPY0|ERA_OCEIH RecName: Full=GTPase Era gi|22777635|dbj|BAC13907.1| GTP-binding protein (Era/TrmE family) [Oceanobacillus iheyensis HTE831] Length = 300 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 171/284 (60%), Gaps = 2/284 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++ N +SG ++++G N GKST +N+ +G K++I++ K QTTR+ ++G+ + ++Q++F+ Sbjct: 1 METNFKSGFLSIIGRPNVGKSTFMNKVIGQKIAIMSDKAQTTRNKIQGVFTTNDAQMIFI 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI K M++++ T+ D + ++++ ++ + K +S + L Sbjct: 61 DTPGIHKPKHRLGDFMVQIAEDTLNEVDSILFMINADEGYGRGDQYIIDLLQKVNSPVFL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 I+NKID + P++LL E L E+ +SA +G+ D +++ L LP P Y Sbjct: 121 IINKIDLIHPDQLLPLIEKYKSLYDFEEIIPISALEGNNVDHLVDVLKEHLPEGPQYYPE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHK-EIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 DQ++D P +E+ REK+ LHL K E+P+S VV E E+ ++ +LI+ I ER S Sbjct: 181 DQVTDHPERFVISELIREKV-LHLTKEEVPHSIAVVIENIEKNENEKLLIQATIVTERSS 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G +K I +A+++I +L V+L L++KV+KDW Sbjct: 240 QKGILIGKQGTMLKNIGKQARRDIEALLGSKVYLELWIKVKKDW 283 >gi|299783168|gb|ADJ41166.1| GTP-binding protein Era [Lactobacillus fermentum CECT 5716] Length = 301 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 161/281 (57%), Gaps = 2/281 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VAL+G N GKSTL+N VG KV+I+++ QTTR+ ++GI + E+QIVF+DTP Sbjct: 5 NYKSGFVALIGRPNVGKSTLLNYMVGQKVAIMSNVAQTTRNKIQGIYTSDEAQIVFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI + M R + S + D + VV ++ + + +++ + K + L++N Sbjct: 65 GIHKPQTRLGXFMERSALSALDEVDAILFVVPANEKRGAGDNFIIERLKKVQQPIYLVVN 124 Query: 139 KIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V P L + A+ L F +K VSA +G+ + ++N L LP P Y ADQ Sbjct: 125 KIDQVNPNDLPDIIAQYEGALPF-KKVVPVSALQGNNVNTLINDLVDQLPTGPQYYPADQ 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +SD P AE+ REK+FL+ +E+P+S + + + D +I + I VERP QK Sbjct: 184 VSDHPERFVIAEMIREKVFLNTREEVPHSVAIDVTSIQREDDETIHVSANIIVERPGQKG 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L L+VKV W Sbjct: 244 IIIGKGGSMLKKIGTAARQDIQALLGDKVFLQLWVKVVPGW 284 >gi|114567081|ref|YP_754235.1| Era, Era/TrmE family GTP-binding protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338016|gb|ABI68864.1| GTP-binding protein Era, Era/TrmE family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 293 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N +G K++IV+ K QTTR+ ++GI + + Q++F+DTPGI Sbjct: 2 KSGFVSIVGRPNVGKSTLLNTIIGEKIAIVSEKPQTTRTRIQGIYTCERGQVIFVDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+++S +++ DI+ + D R +L+++ + L++NKI Sbjct: 62 HKPKHLLGEYMVKVSARSLEEVDIIYYMTDVTRPFGGGESFILEQLKDARVPVFLLVNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V + + + +I N+ + +SA G +++ LP P Y D ++D Sbjct: 122 DLVSEQEVKDYIQIFNQQRSFSEVVSISAACGTNLQLLIDKTLDALPEGPLYYPEDDLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P++ AE+ REK + E+P+S V E+++++ +G + +R IY+ER SQK I++ Sbjct: 182 QPIYLLIAELIREKALMLTRDEVPHSLAVEVEEFKKQSNGKVYVRAAIYMERDSQKGILI 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK GQ +KTI +A+++I +L+ V+L L+VKV+K+W Sbjct: 242 GKKGQMLKTIGEQARQDIESLLDTAVYLDLWVKVKKNW 279 >gi|294675552|ref|YP_003576168.1| GTP-binding protein Era [Prevotella ruminicola 23] gi|294472154|gb|ADE81543.1| GTP-binding protein Era [Prevotella ruminicola 23] Length = 295 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 108/280 (38%), Positives = 161/280 (57%), Gaps = 4/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ E QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S ++ AD++ V D + N+ D L ++ K ++L++NKI Sbjct: 63 LKPNYKLQESMLAFSESALQDADVLLYVTDVVENPEKNM-DFLAKVQKLDMPVLLLINKI 121 Query: 141 DCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D + +L E + L+ + +SA G D +L + LP +P + DQ+ Sbjct: 122 DELTGGNAQLAAIVEKWHALLPKAEILPISAKNKFGVDMLLKRIQELLPESPAYFDKDQL 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P F +EI REK+ L+ KEIPYS V E+++E D I I +IYVER SQK I Sbjct: 182 TDKPARFFVSEIIREKILLYYDKEIPYSVEVAVERFKE-DDKHIHINAIIYVERDSQKGI 240 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++G G +K +S EA+K + + +P+ L +FVKV KDW Sbjct: 241 IIGHQGVALKKVSTEARKSLEKFFAKPIFLEIFVKVDKDW 280 >gi|154249358|ref|YP_001410183.1| GTP-binding protein Era [Fervidobacterium nodosum Rt17-B1] gi|154153294|gb|ABS60526.1| GTP-binding protein Era [Fervidobacterium nodosum Rt17-B1] Length = 301 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + VG N GKS+++N + KV IV+ K QTTR+ + I + + QIVF+DTPGI Sbjct: 5 KSGFASFVGKPNVGKSSIINAIMKKKVVIVSEKPQTTRNRINVIYTTDDFQIVFVDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ + +K+ D++ VD+ + +++ + + + +I ++NKI Sbjct: 65 HKPLHRLGEYMVKAAVQALKNVDLLLFTVDAKEGFETPEEYIIEYVNQSKTPVIGVINKI 124 Query: 141 DCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V ER+ EI K V +++ SA G G D +L + LP P Y D + Sbjct: 125 DLVDRERIDSIEEIMRKKVENLKEVVKTSAVTGEGLDKLLEVIVENLPEGPQFYPEDIVV 184 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ +E+ REK+F ++E+P+S V+ E+ +E+++G IR IYVER SQK I+ Sbjct: 185 DRPLSFIVSELIREKIFHFTYEEVPHSVAVIVEEIKERENGVFYIRANIYVERESQKGII 244 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G+ GQ IK I A+K+I LE V+L LFVKV+KDW Sbjct: 245 IGQKGQMIKKIGESARKDIEYFLESKVYLDLFVKVKKDW 283 >gi|261418494|ref|YP_003252176.1| GTP-binding protein Era [Geobacillus sp. Y412MC61] gi|297529346|ref|YP_003670621.1| GTP-binding protein Era [Geobacillus sp. C56-T3] gi|319767545|ref|YP_004133046.1| GTP-binding protein Era [Geobacillus sp. Y412MC52] gi|261374951|gb|ACX77694.1| GTP-binding protein Era [Geobacillus sp. Y412MC61] gi|297252598|gb|ADI26044.1| GTP-binding protein Era [Geobacillus sp. C56-T3] gi|317112411|gb|ADU94903.1| GTP-binding protein Era [Geobacillus sp. Y412MC52] Length = 302 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 166/283 (58%), Gaps = 1/283 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ +SG VA++G N GKST +NR +G K++I++ K QTTR+ ++G+ ++ ++QI+F+D Sbjct: 3 KEGYKSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDDAQIIFID 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ K M++++ + ++ D++ +V++ +++ + + + + L+ Sbjct: 63 TPGVHKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLKEVDTPVFLV 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V P+ LL + L + +SA +G+ D +L + LP P Y D Sbjct: 123 INKIDRVHPDELLPLIDRYKDLYPFAEIVPISALEGNNVDRLLEQIKERLPEGPQYYPPD 182 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK-DGSILIRQVIYVERPSQ 255 QI+D P AE+ REK +E+P+S VV E+ E ++ G++ I VI VER SQ Sbjct: 183 QITDHPEQFIIAELIREKALHLTREEVPHSIAVVVERIERREGSGTVYISAVIVVERDSQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G+ +K I A+ +I +L V L L+VKVQKDW Sbjct: 243 KGIIIGKQGRMLKEIGQRARADIEALLGSRVFLELWVKVQKDW 285 >gi|296133911|ref|YP_003641158.1| GTP-binding protein Era [Thermincola sp. JR] gi|296032489|gb|ADG83257.1| GTP-binding protein Era [Thermincola potens JR] Length = 300 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 169/279 (60%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N+F+G K++I++ K QTTR+ + G+++ + Q++FLDTPGI Sbjct: 6 KSGFVALIGRPNVGKSTLMNKFLGQKLAIMSEKPQTTRNKINGVLTGENYQVIFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 K + M++++++ +K D++ +V+ + +E+ +L+++ + + +IL++NK Sbjct: 66 HKPKHKLGEYMVQVAYNALKEVDLILFLVEATEQEVGTGDRYILEQLQEIKTPVILVINK 125 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V+ + +L + + VSA G +L+ + LP P Y D IS Sbjct: 126 IDLVQKDAILPVIDAYTARKQFAEVVPVSAITGANLQALLDNILKYLPEGPKYYPDDIIS 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P AE+ REK+ E+P+S V E+ +K+ ++ +R V+YVER SQK I+ Sbjct: 186 DQPERFVMAELIREKVLELTRDEVPHSVAVDIEEVTARKNETVYVRAVVYVERESQKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K + A+++I +L V+L L+VKV+KDW Sbjct: 246 VGKGGQMLKKVGAFARQDIENLLGSKVYLDLWVKVKKDW 284 >gi|118580146|ref|YP_901396.1| GTP-binding protein Era [Pelobacter propionicus DSM 2379] gi|259645964|sp|A1APR8|ERA_PELPD RecName: Full=GTPase Era gi|118502856|gb|ABK99338.1| GTP-binding protein Era [Pelobacter propionicus DSM 2379] Length = 296 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 166/281 (59%), Gaps = 5/281 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G V++VG N GKSTL+NR +G K++I + K QTTR+ ++GI + QIVF+DTPG Sbjct: 6 NRFGYVSIVGRPNVGKSTLLNRIIGEKIAITSDKPQTTRNRIQGIHNIANGQIVFIDTPG 65 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-IHDLLKEIAKRSSRLILILN 138 I +K M+ + + ++ D++ LVVD+ + + D+L + ++L+LN Sbjct: 66 IHACHSRLNKGMVDAALAALRGVDLLLLVVDAGGAIDDRLVRDVL---GGTGTPVMLVLN 122 Query: 139 KIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D + +R LLE+ ++L + +SA G G D ++ +C LP ++ D Sbjct: 123 KVDLLADKRVLLERMAAWSQLYPFREILPISAGSGEGVDGLIETVCGYLPEGQPLFPDDI 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++DLP AE+ REK+F EIPYS+ V E + E+ +G + I I +ERP+QK Sbjct: 183 LTDLPERFIVAEMIREKIFRLTRDEIPYSTAVTVESFTERPNGVVAISAAICLERPNQKG 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K I +A+ +I +L V L LFVK++++W Sbjct: 243 IIIGKKGEMLKKIGSQARHDIERLLGTRVFLELFVKIEENW 283 >gi|222100702|ref|YP_002535270.1| GTP-binding protein era like protein [Thermotoga neapolitana DSM 4359] gi|221573092|gb|ACM23904.1| GTP-binding protein era like protein [Thermotoga neapolitana DSM 4359] Length = 301 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 107/281 (38%), Positives = 162/281 (57%), Gaps = 1/281 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VAL G N GKST +N +G KV IV+ K QTTR+ + I ++K++QIVF+DTP Sbjct: 3 NIKSGFVALAGKPNVGKSTFINTVLGRKVVIVSDKPQTTRNRINCIYTDKDAQIVFVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI + M+R + +K DIV ++D+ + K + + ++ I+ +N Sbjct: 63 GIHKPLHRLGEYMVRAAVQALKGVDIVLFMLDAADGFTKTDEQVAKIVNESRTKTIIAVN 122 Query: 139 KIDCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID E+ E+A +V +SA KG G ++L+ + LP P Y D Sbjct: 123 KIDVAGEEKAKSVGELAKSMVENAVSVHYISALKGIGVFELLDRIKEELPEGPQYYPEDM 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+D P+ AEI REK+F +E+P+S+ VV E+ +++ +G + IR IYVER SQK Sbjct: 183 ITDRPLSFMAAEIIREKIFHLTRQEVPHSTAVVIEEIKDRPNGVLYIRANIYVERDSQKG 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GKNG IK I A++EI ++ + V L L VKV++ W Sbjct: 243 ILIGKNGSMIKKIGTLAREEIEFLVGRKVFLDLNVKVKEKW 283 >gi|328957481|ref|YP_004374867.1| GTP-binding protein Era [Carnobacterium sp. 17-4] gi|328673805|gb|AEB29851.1| GTP-binding protein Era [Carnobacterium sp. 17-4] Length = 302 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 106/289 (36%), Positives = 170/289 (58%), Gaps = 8/289 (2%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 NEHK SG V++VG N GKSTL+NR VG K++I++ K QTTR+ ++GI + E Sbjct: 5 NEHK--------SGFVSIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTTPE 56 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 SQIVF+DTPGI K M+ ++S + D++ +V+ + + +++++ Sbjct: 57 SQIVFIDTPGIHKPKHRLGDFMVNSAFSAFREVDVILFMVNITEKRGPGDNFIMEKLKTV 116 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 S + L+LNKID + P++LL E LV + +SA++G+ D +L + LP Sbjct: 117 KSPVFLVLNKIDKIHPDQLLPIIEDYRSLVDFAQVIPISASEGNNVDTLLEEITKYLPTG 176 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 P Y DQ++D P + +E+ REK+ +E+P+S VV E + + G + + I Sbjct: 177 PQFYPEDQVTDHPEYFIVSELIREKVLELTREEVPHSVAVVVESMQRNELGKVQVHAAII 236 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VER SQK I++GK G+ +K I + A+++I +L ++L L+VKVQKDW Sbjct: 237 VERSSQKGIIIGKGGKMLKDIGIRARRDIEVLLGDKIYLDLWVKVQKDW 285 >gi|329733159|gb|EGG69496.1| ribosome biogenesis GTPase Era [Staphylococcus aureus subsp. aureus 21193] Length = 299 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+ D + +V+++ E+ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + +SA +G D ++ L + LP P Y DQISD Sbjct: 125 DLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I ++L V+L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEKLLGSKVYLELWVKVQRDW 282 >gi|284024626|ref|ZP_06379024.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus 132] Length = 299 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G +N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRSNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+ D + +V+++ E+ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + +SA +G D ++ L + LP P Y DQISD Sbjct: 125 DLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDW 282 >gi|251796247|ref|YP_003010978.1| GTP-binding protein Era [Paenibacillus sp. JDR-2] gi|247543873|gb|ACT00892.1| GTP-binding protein Era [Paenibacillus sp. JDR-2] Length = 299 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 162/284 (57%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 Q RSG VA++G N GKSTL+N +G K++I++ K QTTR+ + G+ + SQIVF Sbjct: 1 MTQTKFRSGFVAIIGRPNVGKSTLMNHLIGQKIAIMSDKPQTTRNKIHGVYTTDTSQIVF 60 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPGI + M++ + +K + V ++D L +++++ K + + Sbjct: 61 LDTPGIHKPQSKLGDYMMKTAEGALKEVEAVLFLIDVADGLGGGDRFIIEQLKKVDTPVF 120 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 L++NKID V+PE+LL L + +SA +G+ + +L L LP P Y Sbjct: 121 LVMNKIDKVQPEQLLSTITQYKDLYPFAEIVPISALQGNNVETLLAQLQKYLPEGPQYYP 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 ADQ++D P +E+ REK+ +EIP+S V E + +++G + I VI+VER S Sbjct: 181 ADQVTDHPEQFVVSELIREKILHMTREEIPHSIAVGIEDMKVQENGVVYIGAVIFVERDS 240 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G +K + +A+++I +L L L+VKV+KDW Sbjct: 241 QKGIIIGKKGALLKEVGKQARRDIEALLGSRTFLELWVKVKKDW 284 >gi|300726753|ref|ZP_07060183.1| GTP-binding protein Era [Prevotella bryantii B14] gi|299775866|gb|EFI72446.1| GTP-binding protein Era [Prevotella bryantii B14] Length = 293 Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 110/290 (37%), Positives = 167/290 (57%), Gaps = 7/290 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV++ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNDDDCQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M+ S S + AD++ V D + N D L ++ K + ++L++NKI Sbjct: 63 LKPNYKMQEMMLAFSESALADADVLLYVTDVIESPEKN-QDFLDKVKKMTIPVLLVINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + E + L+ + +SA G D ++ + LP +P + DQ++D Sbjct: 122 DESNQKLLGDIVEKWHGLLPNAEILPISAKNKFGVDMLMKRIKELLPDSPPYFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS VV E+++E + I I VIYVER SQK I++ Sbjct: 182 KPAKFFVSEIIREKILLYYDKEIPYSVEVVVERFKE-DEKRIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQREI 310 G G +K +S EA+K + + ++ V L FVKV KDW + QRE+ Sbjct: 241 GHQGVALKKVSSEARKTLEKFFDKRVFLETFVKVDKDWRNS-----QREL 285 >gi|225849321|ref|YP_002729485.1| GTP-binding protein Era [Sulfurihydrogenibium azorense Az-Fu1] gi|225643668|gb|ACN98718.1| GTP-binding protein Era [Sulfurihydrogenibium azorense Az-Fu1] Length = 300 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 176/284 (61%), Gaps = 3/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G VALVG N GKSTL+N +G K+SIV+ K QTTR + G+ ++QI+FLD PG+ Sbjct: 4 KAGFVALVGRPNVGKSTLLNNILGTKLSIVSPKPQTTRMRILGVKHLPDAQIIFLDAPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 D K ++ + ++++ AD++ +++++ + ++++ K+ ++ +IL +NK Sbjct: 64 QKGGDLLSKSVLESAVASMEDADVIVMIIEADKGWTKEDKEIVENYIKKYNKPVILAINK 123 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID ++ + +L E + K+ ++ +SA K D++LN + LP +P +Y D I+ Sbjct: 124 IDKIQRDLVLPLIEESTKIYDFKEYVPISAIKNINIDELLNTIKKYLPESPPLYPEDMIT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 DLP+ + AEI REK+F + +E+PYS V E K EK ++I VIYVER + K Sbjct: 184 DLPLKLWIAEIIREKVFFNTKQEVPYSVAVEVESIKEGEKNKNLLIIDAVIYVERDNHKG 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK GQ +K I +A++E+ +L + VHL L+VKV+++W D Sbjct: 244 IIIGKKGQMLKKIGSQAREELEFLLGKKVHLNLYVKVKENWKED 287 >gi|310643039|ref|YP_003947797.1| gtp-binding protein era-like protein [Paenibacillus polymyxa SC2] gi|309247989|gb|ADO57556.1| GTP-binding protein era-like protein [Paenibacillus polymyxa SC2] Length = 300 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 99/278 (35%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ + G+ + +++QIVFLDTPGI Sbjct: 7 KSGFVAIVGRPNVGKSTLMNHVIGQKIAIMSDKPQTTRNKIHGVYTTEDTQIVFLDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M + +++++ + V ++D+ L + +++ + + +IL+LNKI Sbjct: 67 HKRQSKLGDYMNQTAFNSLGEVEAVLFLIDAAEGLGGGDRFIAEQLKQVKTPVILVLNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++PE LL E KL + +SA G+ + +L+ + LP P Y DQI+D Sbjct: 127 DRIEPEALLPLIEQYRKLYDFAEIVPISAKMGNNVNTLLDQVQKYLPEGPQYYPDDQITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S V+ E + +++G + I VI+VER SQK I++ Sbjct: 187 HPEQFVIAELVREKILHMTREEVPHSIAVMIEDMKVQENGVVHIMAVIFVERDSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + +A+++I +L + L L+VKV+KDW Sbjct: 247 GKQGAMLKEVGKQARQDIQNLLGSKIFLELWVKVKKDW 284 >gi|281421767|ref|ZP_06252766.1| GTP-binding protein Era [Prevotella copri DSM 18205] gi|281404262|gb|EFB34942.1| GTP-binding protein Era [Prevotella copri DSM 18205] Length = 293 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 163/278 (58%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M+ S S + AD++ V D + N+ + L+++ K ++L++NKI Sbjct: 63 LKPNYKMQEMMLAFSESALADADVLLYVTDVIENPEKNM-EFLEKVKKMQIPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D P++L + E + L+ + +SA G D +L + LP +P + DQ++D Sbjct: 122 DQSDPKKLGDIVEKWHSLLPNAEILPISAKNKFGTDMLLKRIKELLPESPAFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS V E+++E + I I VIYVER SQK I++ Sbjct: 182 KPARFFVSEIIREKILLYYDKEIPYSVEVRVERFKE-DEKRIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K ++ E++K + + ++ + L FVKV KDW Sbjct: 241 GHQGIALKKVNTESRKALEKFFDKKIFLETFVKVDKDW 278 >gi|213961788|ref|ZP_03390054.1| GTP-binding protein Era [Capnocytophaga sputigena Capno] gi|213955577|gb|EEB66893.1| GTP-binding protein Era [Capnocytophaga sputigena Capno] Length = 293 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 109/279 (39%), Positives = 158/279 (56%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIVS + Q+VF DTPGI Sbjct: 3 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + M+ S + ADI+ +V+ +ELK + I K ++L++NK Sbjct: 63 IKPSYALQASMMDFVKSAFEDADILIYMVEIGEKELKDEV--FFNRINKLEVPVLLLINK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D L EQ + V + F +SA + + V N + LP +P + DQ++ Sbjct: 121 VDTSDQSTLEEQVAYWKEKVPRAEIFPISALRNFQTEVVFNRIIELLPESPAFFPKDQLT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F EI REK+ LH KEIPYS V TE + + + I IR VI VER SQK I+ Sbjct: 181 DKPERFFVNEIIREKILLHYKKEIPYSVEVETESFAD-SETIIHIRSVIMVERESQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G+ +K + +EA+ ++ + + +HL LFVKV KDW Sbjct: 240 IGHKGEALKRVGVEARTDLEKFFGKQIHLELFVKVNKDW 278 >gi|224476675|ref|YP_002634281.1| GTP-binding protein Era [Staphylococcus carnosus subsp. carnosus TM300] gi|254783663|sp|B9DNL3|ERA_STACT RecName: Full=GTPase Era gi|222421282|emb|CAL28096.1| putative GTP-binding protein Era [Staphylococcus carnosus subsp. carnosus TM300] Length = 299 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 165/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +NR +G K++I++ K QTTR+ + G+++E ++QI+F+DTPGI Sbjct: 5 KSGFVAIIGRPNVGKSTFMNRVLGHKIAIMSDKAQTTRNKIHGVMTEDDAQIIFVDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+ D V +V+++ E+ +++ + + + L++NKI Sbjct: 65 HKPKHKLGDYMMKVAKNTLTEVDAVIFMVNANEEIGRGDEYIMEMLKNIKTPVFLVINKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++++ E K + + +SA +G D +N L S +P P Y QISD Sbjct: 125 DLVHPDQIMPIIESYEKHMHFTEAVPMSALEGLNVDHFINVLKSYMPEGPQYYPDGQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +EIP+S V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVSELIREKVLHLTSEEIPHSIGVNVDRMVKQSEDRVRIEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I A+ +I +L V+L L+VKVQKDW Sbjct: 245 GKGGKKLKEIGKRARIDIENLLGSKVYLDLWVKVQKDW 282 >gi|223044391|ref|ZP_03614425.1| GTP-binding protein Era [Staphylococcus capitis SK14] gi|314933739|ref|ZP_07841104.1| GTP-binding protein Era [Staphylococcus caprae C87] gi|222442260|gb|EEE48371.1| GTP-binding protein Era [Staphylococcus capitis SK14] gi|313653889|gb|EFS17646.1| GTP-binding protein Era [Staphylococcus caprae C87] Length = 300 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 6 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+R++ +T+ D + +V+ + ++ +++ + + + L+LNKI Sbjct: 66 HKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLVLNKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + + +SA +G D ++ L S LP+ P Y DQISD Sbjct: 126 DLVHPDALMPRIEKYKEYMDFTEIIPISALEGLNVDHFIDVLKSYLPVGPKYYPDDQISD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +EI REK+ +EIP++ V ++ ++ + + + IYVER SQK I++ Sbjct: 186 HPEQFVVSEIIREKILHLTSEEIPHAIGVNVDRMIKEDEDRVRVEATIYVERDSQKGIVI 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V+L L+VKVQ+DW Sbjct: 246 GKGGKKLKEVGKRARHDIEMLLGSKVYLELWVKVQRDW 283 >gi|332666380|ref|YP_004449168.1| GTP-binding protein Era-like-protein [Haliscomenobacter hydrossis DSM 1100] gi|332335194|gb|AEE52295.1| GTP-binding protein Era-like-protein [Haliscomenobacter hydrossis DSM 1100] Length = 298 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 109/287 (37%), Positives = 169/287 (58%), Gaps = 7/287 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG + ++G N GKSTL+N VG ++SI+T+K QTTR + GI+S ++ Q+V DTPG+ Sbjct: 3 RSGFINIIGHPNVGKSTLMNALVGERMSIITNKPQTTRHRIIGILSGEDFQMVLSDTPGV 62 Query: 81 FNAKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + K +Y H+ M ST + AD++ LV D H L + ++ + ++LN Sbjct: 63 VD-KPAYKMHQAMNSFVQSTFEDADLMLLVTDVLETYPAEDHLLAQLRKQQEVPMFVVLN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V E+L + + + + +SA K D +LN L LP P Y DQ+ Sbjct: 122 KIDLVDEEKLAQLQQFWAEQLPQATLIPISALKKTNTDLLLNTLKENLPEGPEYYPKDQL 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK--DGSILIR--QVIYVERPS 254 +D P F +EI REK+ L H+EIPY++ V+ E ++E + G + R IYVER + Sbjct: 182 TDRPERFFMSEIIREKIMLLYHQEIPYATQVIIEDFKEDQTVGGKAIARISATIYVERDT 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GKNG +IK + +A++++ LE+ V L LFVKV+++W +D Sbjct: 242 QKSILIGKNGVSIKKLGTDARQDMEIFLEKKVFLELFVKVKENWRND 288 >gi|311031640|ref|ZP_07709730.1| GTP-binding protein Era [Bacillus sp. m3-13] Length = 305 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 173/281 (61%), Gaps = 1/281 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ ++ ++QIVF+DTP Sbjct: 8 NYKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVFTQDDAQIVFIDTP 67 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI K M++++ +T+K D+V ++++ L +++++ + S+ + L++N Sbjct: 68 GIHKPKHKLGDFMMKVAQNTLKEVDLVLFMINAKEGLGKGDEFIIEKLKETSTPVYLVIN 127 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V P+ LL E L ++ +SA +G+ + +L+ + LP P Y ADQ+ Sbjct: 128 KIDEVHPDDLLPLMETYKALYPFKEIVPISALQGNNVEVLLDQIKKFLPEGPQYYPADQV 187 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D P AE+ REK+ +E+P+S V + +++++ ++ I+ + VER SQK Sbjct: 188 TDHPERFIVAELIREKVLHLTREEVPHSIAVAIDSMKKRENKDMVDIQATVVVERDSQKG 247 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K + +A+ +I +L V L L+VKVQKDW Sbjct: 248 IVIGKQGKVLKEVGQKARVDIEALLGSKVFLELWVKVQKDW 288 >gi|193213835|ref|YP_001995034.1| GTP-binding protein Era [Chloroherpeton thalassium ATCC 35110] gi|193087312|gb|ACF12587.1| GTP-binding protein Era [Chloroherpeton thalassium ATCC 35110] Length = 321 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 173/292 (59%), Gaps = 20/292 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G ++G NAGKSTL+N +G K+SIVT K QTTR V GI ++K QIV LDTPGI Sbjct: 23 KAGFATILGEPNAGKSTLLNVLLGEKISIVTPKPQTTRKRVLGIFTDKSCQIVLLDTPGI 82 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR------ELKVNIHDLLKEIAKRSSRLI 134 K H+ M+ L+ +++ +D++ L++D + ELK ++ + IA +I Sbjct: 83 MKPKYKLHEAMLDLADKSVEDSDVLVLLLDVEKYQKGKAELKADLA--FQRIANTKKPVI 140 Query: 135 LILNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L+LNK+D + + LE A+ +++ F E +SA KG+ + L + LP +P +Y Sbjct: 141 LVLNKVDLITKDASLELIAKFSSEYPFRE-IVPLSALKGYNIREFLKAVVPYLPASPPLY 199 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-------KKDGSILIRQ 246 D +S P F +EI REK+F +EIPYS+ V E+++E +KD ++R Sbjct: 200 PPDILSTAPERFFVSEIIREKIFQFFSQEIPYSTEVDVEEFQENYEKNPARKD---VLRC 256 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I V+R SQK I++GK+G+ IK + A+K+I L +PV L LFVKV++ W Sbjct: 257 AIVVDRLSQKSILIGKDGKAIKRVGQAARKDIEAFLGRPVFLELFVKVKEGW 308 >gi|330686118|gb|EGG97739.1| ribosome biogenesis GTPase Era [Staphylococcus epidermidis VCU121] Length = 299 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 167/281 (59%), Gaps = 6/281 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++GI++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGIMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 K M++++ +T+ D + +V+ + ++ I D+LK++ + + L+L Sbjct: 65 HKPKHKLGDYMMKVATNTLSEIDAIMFMVNVNEDIGRGDEYIMDMLKDL---KTPVFLVL 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID V P+ L+ + E + + + +SA +G D ++ L S LP P Y DQ Sbjct: 122 NKIDLVHPDALMPKIEKYQEYMNFTEIVPISALEGLNVDHFIDVLKSYLPEGPKYYPDDQ 181 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ISD P EI REK+ +EIP++ V ++ ++ + + I IYVER SQK Sbjct: 182 ISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMIKEDEDRVRIEATIYVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K + A+ +I +L V+L L+VKVQKDW Sbjct: 242 IVIGKGGKKLKEVGKRARHDIEMLLGSKVYLELWVKVQKDW 282 >gi|269941057|emb|CBI49441.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus TW20] Length = 299 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 165/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+ D + +V+++ E+ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + +SA +G D ++ L + LP P Y DQISD Sbjct: 125 DLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKENEDRVHIEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDW 282 >gi|313892377|ref|ZP_07825969.1| ribosome biogenesis GTPase Era [Dialister microaerophilus UPII 345-E] gi|313119236|gb|EFR42436.1| ribosome biogenesis GTPase Era [Dialister microaerophilus UPII 345-E] Length = 301 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 162/277 (58%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG +ALVG N GKSTL+N +G K+SIV+ QTTR+ + G+ + + SQIVFLDTPG+ Sbjct: 9 SGFIALVGRPNVGKSTLLNTVLGEKISIVSAHAQTTRNKITGVWNGENSQIVFLDTPGMH 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K +++ + + I DIV ++ LL + + + ++L+LNKID Sbjct: 69 KPKSKLGEVIRQSTVDAIGEVDIVVMICACDDPPGAGDRYLLSLLENKKTPVVLVLNKID 128 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V +L++ + +++ ++ VSA G D+++ L LP P + D I+D Sbjct: 129 LVSEVAILKKIKQYSQMYNFKEIIPVSAQTGRNMDELMQVLEKMLPEGPKYFPDDMITDQ 188 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P EI REK+ L H+EIP++ V TE+++ +++G + IR IYVER SQK+I++G Sbjct: 189 PERIIVQEIVREKILLRTHEEIPHAIGVFTEEFKVRENGKVYIRCTIYVERESQKRIVIG 248 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G +K EA++EI +++ PV L L+VKV +DW Sbjct: 249 SKGSLLKDAGKEAREEIQKVVGSPVFLDLWVKVNRDW 285 >gi|161353525|ref|YP_500179.2| GTP-binding protein Era [Staphylococcus aureus subsp. aureus NCTC 8325] gi|317374940|sp|Q2FY06|ERA_STAA8 RecName: Full=GTPase Era gi|329728341|gb|EGG64778.1| ribosome biogenesis GTPase Era [Staphylococcus aureus subsp. aureus 21189] Length = 299 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 165/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+ D + +V+++ E+ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + +SA +G D ++ L + LP P Y DQISD Sbjct: 125 DLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIYVERGSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDW 282 >gi|138896062|ref|YP_001126515.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2] gi|134267575|gb|ABO67770.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2] Length = 302 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 166/279 (59%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +NR +G K++I++ K QTTR+ ++G+ ++ E+QI+F+DTPG+ Sbjct: 7 KSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDEAQIIFIDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ + ++ D++ +V++ +++ + + ++ + L++NKI Sbjct: 67 HKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLNEVNTPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL + L + +SA +G+ + +L + LP P Y DQI+D Sbjct: 127 DRVHPDELLPIIDRYKDLYTFAEIVPISALEGNNVERLLEQIKQRLPEGPQYYPPDQITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKIM 259 P AE+ REK +E+P+S VV E+ E +++ G++ + VI VER SQK I+ Sbjct: 187 HPEQFIIAELIREKALHLTREEVPHSIAVVVERIERREETGTVYVGAVIVVERDSQKGII 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G+ +K I A+ +I +L V L L+VKVQKDW Sbjct: 247 IGKQGRMLKEIGQRARADIEALLGSRVFLELWVKVQKDW 285 >gi|15924557|ref|NP_372091.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus Mu50] gi|15927147|ref|NP_374680.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus N315] gi|21283248|ref|NP_646336.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MW2] gi|49483815|ref|YP_041039.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MRSA252] gi|49486402|ref|YP_043623.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MSSA476] gi|57651960|ref|YP_186464.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus COL] gi|87161238|ref|YP_494222.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|148268051|ref|YP_001246994.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus JH9] gi|150394119|ref|YP_001316794.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus JH1] gi|151221682|ref|YP_001332504.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus str. Newman] gi|156979885|ref|YP_001442144.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus Mu3] gi|161509795|ref|YP_001575454.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140013|ref|ZP_03564506.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316042|ref|ZP_04839255.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733183|ref|ZP_04867348.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus TCH130] gi|255006353|ref|ZP_05144954.2| GTP-binding protein Era [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425692|ref|ZP_05602116.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus 55/2053] gi|257428353|ref|ZP_05604751.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus 65-1322] gi|257430990|ref|ZP_05607370.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus 68-397] gi|257433678|ref|ZP_05610036.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus E1410] gi|257436592|ref|ZP_05612636.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M876] gi|257793643|ref|ZP_05642622.1| GTP-binding protein Era [Staphylococcus aureus A9781] gi|258411057|ref|ZP_05681337.1| GTP-binding protein Era [Staphylococcus aureus A9763] gi|258420139|ref|ZP_05683094.1| GTP-binding protein Era [Staphylococcus aureus A9719] gi|258423995|ref|ZP_05686877.1| GTP-binding protein Era [Staphylococcus aureus A9635] gi|258437399|ref|ZP_05689383.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443605|ref|ZP_05691944.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446812|ref|ZP_05694966.1| GTP-binding protein Era [Staphylococcus aureus A6300] gi|258448726|ref|ZP_05696838.1| GTP-binding protein Era [Staphylococcus aureus A6224] gi|258450604|ref|ZP_05698666.1| GTP-binding protein Era [Staphylococcus aureus A5948] gi|258453543|ref|ZP_05701521.1| GTP-binding protein Era [Staphylococcus aureus A5937] gi|262051227|ref|ZP_06023451.1| hypothetical protein SA930_1658 [Staphylococcus aureus 930918-3] gi|269203195|ref|YP_003282464.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ED98] gi|282893068|ref|ZP_06301302.1| GTP-binding protein Era [Staphylococcus aureus A8117] gi|282904149|ref|ZP_06312037.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C160] gi|282905976|ref|ZP_06313831.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus Btn1260] gi|282908886|ref|ZP_06316704.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911205|ref|ZP_06319007.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus WBG10049] gi|282914374|ref|ZP_06322160.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M899] gi|282916837|ref|ZP_06324595.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus D139] gi|282919343|ref|ZP_06327078.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C427] gi|282920116|ref|ZP_06327841.1| GTP-binding protein Era [Staphylococcus aureus A9765] gi|282924668|ref|ZP_06332336.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C101] gi|282928200|ref|ZP_06335805.1| GTP-binding protein Era [Staphylococcus aureus A10102] gi|283958331|ref|ZP_06375782.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus A017934/97] gi|293503448|ref|ZP_06667295.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus 58-424] gi|293510465|ref|ZP_06669171.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M809] gi|293531005|ref|ZP_06671687.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M1015] gi|294848598|ref|ZP_06789344.1| GTP-binding protein Era [Staphylococcus aureus A9754] gi|295406690|ref|ZP_06816495.1| GTP-binding protein Era [Staphylococcus aureus A8819] gi|295428145|ref|ZP_06820777.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275811|ref|ZP_06858318.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MR1] gi|297207714|ref|ZP_06924149.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245728|ref|ZP_06929593.1| GTP-binding protein Era [Staphylococcus aureus A8796] gi|297590889|ref|ZP_06949527.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MN8] gi|300911795|ref|ZP_07129238.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus TCH70] gi|304380844|ref|ZP_07363504.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54037042|sp|P64085|ERA_STAAN RecName: Full=GTPase Era gi|54037043|sp|P64086|ERA_STAAW RecName: Full=GTPase Era gi|54040763|sp|P64084|ERA_STAAM RecName: Full=GTPase Era gi|56748908|sp|Q6G900|ERA_STAAS RecName: Full=GTPase Era gi|56748919|sp|Q6GGD3|ERA_STAAR RecName: Full=GTPase Era gi|81694385|sp|Q5HFJ3|ERA_STAAC RecName: Full=GTPase Era gi|123485633|sp|Q2FGF6|ERA_STAA3 RecName: Full=GTPase Era gi|189037668|sp|A7X2W5|ERA_STAA1 RecName: Full=GTPase Era gi|189037669|sp|A6U239|ERA_STAA2 RecName: Full=GTPase Era gi|189037670|sp|A5IT95|ERA_STAA9 RecName: Full=GTPase Era gi|189037671|sp|A6QHB0|ERA_STAAE RecName: Full=GTPase Era gi|189037672|sp|A8Z4A6|ERA_STAAT RecName: Full=GTPase Era gi|13701365|dbj|BAB42659.1| bex [Staphylococcus aureus subsp. aureus N315] gi|14247338|dbj|BAB57729.1| GTP-binding protein Era homolog [Staphylococcus aureus subsp. aureus Mu50] gi|21204688|dbj|BAB95384.1| bex [Staphylococcus aureus subsp. aureus MW2] gi|49241944|emb|CAG40639.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244845|emb|CAG43306.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286146|gb|AAW38240.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus COL] gi|87127212|gb|ABD21726.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|147741120|gb|ABQ49418.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus JH9] gi|149946571|gb|ABR52507.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus JH1] gi|150374482|dbj|BAF67742.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus str. Newman] gi|156722020|dbj|BAF78437.1| GTP-binding protein Era homolog [Staphylococcus aureus subsp. aureus Mu3] gi|160368604|gb|ABX29575.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728723|gb|EES97452.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus TCH130] gi|257271386|gb|EEV03532.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus 55/2053] gi|257275194|gb|EEV06681.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus 65-1322] gi|257278420|gb|EEV09056.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus 68-397] gi|257281771|gb|EEV11908.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus E1410] gi|257283943|gb|EEV14066.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M876] gi|257787615|gb|EEV25955.1| GTP-binding protein Era [Staphylococcus aureus A9781] gi|257840207|gb|EEV64671.1| GTP-binding protein Era [Staphylococcus aureus A9763] gi|257843850|gb|EEV68244.1| GTP-binding protein Era [Staphylococcus aureus A9719] gi|257845616|gb|EEV69648.1| GTP-binding protein Era [Staphylococcus aureus A9635] gi|257848604|gb|EEV72592.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851011|gb|EEV74954.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854387|gb|EEV77336.1| GTP-binding protein Era [Staphylococcus aureus A6300] gi|257858004|gb|EEV80893.1| GTP-binding protein Era [Staphylococcus aureus A6224] gi|257861762|gb|EEV84561.1| GTP-binding protein Era [Staphylococcus aureus A5948] gi|257864274|gb|EEV87024.1| GTP-binding protein Era [Staphylococcus aureus A5937] gi|259160864|gb|EEW45884.1| hypothetical protein SA930_1658 [Staphylococcus aureus 930918-3] gi|262075485|gb|ACY11458.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ED98] gi|282313503|gb|EFB43898.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C101] gi|282317153|gb|EFB47527.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C427] gi|282319324|gb|EFB49676.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus D139] gi|282321555|gb|EFB51880.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M899] gi|282324900|gb|EFB55210.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus WBG10049] gi|282327150|gb|EFB57445.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331268|gb|EFB60782.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus Btn1260] gi|282590007|gb|EFB95089.1| GTP-binding protein Era [Staphylococcus aureus A10102] gi|282594464|gb|EFB99449.1| GTP-binding protein Era [Staphylococcus aureus A9765] gi|282595767|gb|EFC00731.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus C160] gi|282764386|gb|EFC04512.1| GTP-binding protein Era [Staphylococcus aureus A8117] gi|283470845|emb|CAQ50056.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ST398] gi|283790480|gb|EFC29297.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus A017934/97] gi|285817249|gb|ADC37736.1| GTP-binding protein Era [Staphylococcus aureus 04-02981] gi|290920273|gb|EFD97339.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M1015] gi|291095114|gb|EFE25379.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus 58-424] gi|291466829|gb|EFF09349.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus M809] gi|294824624|gb|EFG41047.1| GTP-binding protein Era [Staphylococcus aureus A9754] gi|294968437|gb|EFG44461.1| GTP-binding protein Era [Staphylococcus aureus A8819] gi|295128503|gb|EFG58137.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887731|gb|EFH26629.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177379|gb|EFH36631.1| GTP-binding protein Era [Staphylococcus aureus A8796] gi|297575775|gb|EFH94491.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MN8] gi|298694849|gb|ADI98071.1| GTP-binding protein [Staphylococcus aureus subsp. aureus ED133] gi|300886041|gb|EFK81243.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus TCH70] gi|302333243|gb|ADL23436.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus JKD6159] gi|304340571|gb|EFM06505.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437964|gb|ADQ77035.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus TCH60] gi|312829955|emb|CBX34797.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129845|gb|EFT85835.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus CGS03] gi|315195469|gb|EFU25856.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus CGS00] gi|315198738|gb|EFU29066.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus CGS01] gi|320140548|gb|EFW32402.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MRSA131] gi|320144085|gb|EFW35854.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus MRSA177] gi|323440465|gb|EGA98177.1| GTP-binding protein Era [Staphylococcus aureus O11] gi|323443239|gb|EGB00857.1| GTP-binding protein Era [Staphylococcus aureus O46] gi|329314243|gb|AEB88656.1| GTP-binding protein era -like protein [Staphylococcus aureus subsp. aureus T0131] gi|329727411|gb|EGG63867.1| ribosome biogenesis GTPase Era [Staphylococcus aureus subsp. aureus 21172] Length = 299 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 165/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+ D + +V+++ E+ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + +SA +G D ++ L + LP P Y DQISD Sbjct: 125 DLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDW 282 >gi|313205716|ref|YP_004044893.1| GTP-binding protein era [Riemerella anatipestifer DSM 15868] gi|312445032|gb|ADQ81387.1| GTP-binding protein Era [Riemerella anatipestifer DSM 15868] gi|315022889|gb|EFT35913.1| GTP-binding protein Era [Riemerella anatipestifer RA-YM] gi|325336843|gb|ADZ13117.1| GTPase [Riemerella anatipestifer RA-GD] Length = 291 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 105/279 (37%), Positives = 166/279 (59%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG NAGKSTL+N+ +G K++IVT K QTTR + GI +E + QIVF DTPG+ Sbjct: 3 KAGFVNIVGKPNAGKSTLLNQLMGEKLAIVTKKAQTTRHRIFGIYNEPDLQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K + M+ +++ AD+ +VD + ++ L++++ K +++++NK Sbjct: 63 LDPKYGLQEKMMDFVKDSLQDADVFLFIVDVTDKDAPSEF--LIEKLNKIPVPVLILINK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID E L + ++ + + +SA +G D +L L S LP P Y +Q + Sbjct: 121 IDQTNQEELEKSMHFWHEQIPKAEILPISALEGFNTDVILPKLKSLLPENPPYYDKEQFT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D F E REK+ L+ KEIPYS VVTE ++E K+G I I +IYVER SQK I+ Sbjct: 181 DKSERFFVNEAIREKILLNYEKEIPYSVEVVTEMFKE-KEGIIFIDSIIYVERDSQKGIL 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G+ IK + +A+ ++ + ++ +HL LFVKV+KDW Sbjct: 240 IGHKGEAIKKVGTQARLDLEKFFDKKIHLNLFVKVRKDW 278 >gi|320353093|ref|YP_004194432.1| GTP-binding protein Era [Desulfobulbus propionicus DSM 2032] gi|320121595|gb|ADW17141.1| GTP-binding protein Era [Desulfobulbus propionicus DSM 2032] Length = 299 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 166/286 (58%), Gaps = 6/286 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG A++G NAGKSTL+N +G K++IVT K QTTR+ + GIV+ Q++ LDTPG+ Sbjct: 7 RSGVAAIIGPPNAGKSTLLNHLLGQKIAIVTPKPQTTRNRIMGIVTGTSYQMILLDTPGL 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILI 136 A++ ++ M+R++ ++ AD++ +VD + ++ + + + K + ++L Sbjct: 67 HAAREEMNRQMVRVALESLAEADVILFLVDGADWAEKKREQRAEEFQGYLEKMTCPVVLA 126 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNK+D + +LL + +L +SA +G G D + + L + LP+ P Y D Sbjct: 127 LNKVDLLPSAQLLPVMDWYRRLYPFAAMVPISALRGTGIDTLTDELVARLPVGPQYYPED 186 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 +D AEI REK+FL E+PYS+ V+ + +EE + ++I+ I VER SQK Sbjct: 187 IPTDASERFIAAEIIREKIFLLTRDEVPYSTAVIIDSFEEGE--PVVIQATILVERSSQK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I++G+ G + I A +EI ++L V L L++KV+K+W +P Sbjct: 245 GILVGQKGSMLAAIRKSATREIEQLLGCRVRLHLWIKVRKNWTGNP 290 >gi|212550703|ref|YP_002309020.1| GTP-binding protein Era [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548941|dbj|BAG83609.1| GTP-binding protein Era [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 300 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/287 (38%), Positives = 169/287 (58%), Gaps = 3/287 (1%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H D +++ +SG V +VG N GKSTL+N VG K+SI+T K QTTR + GIV++ Q Sbjct: 2 HSD-IENKHKSGFVNIVGNPNVGKSTLMNTLVGGKLSIITSKAQTTRHRIIGIVNKPNVQ 60 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 IVF DTPGI K M+ S S ++ ADI+ V D +L V LK++ + + Sbjct: 61 IVFSDTPGILRPNYKLQKKMLNFSESALEDADILLYVSDIKNQL-VKTDFFLKKMQQTNL 119 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ++LILNKID ++L ++ +K++ + +SA D + + LP +P Sbjct: 120 PILLILNKIDLFNQKQLEQKVIEYHKILPNAEIIPISAINQFNTDYLQKRIEKLLPESPP 179 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + + I+D P F+ EI REK+ L+ KEIPYS V E ++E+KD I I+ +I E Sbjct: 180 YFEKNTITDRPARFFSTEIIREKVLLYYQKEIPYSVEVTIELFKEQKD-LIWIKAIIITE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R SQKKI++GK+G+ +K I A+K+I + ++ + L + VKV+K+W Sbjct: 239 RDSQKKIIIGKDGKALKRIGFTARKDIEKFFDKKIFLEMHVKVEKNW 285 >gi|206901698|ref|YP_002251036.1| GTP-binding protein Era [Dictyoglomus thermophilum H-6-12] gi|206740801|gb|ACI19859.1| GTP-binding protein Era [Dictyoglomus thermophilum H-6-12] Length = 297 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 171/289 (59%), Gaps = 2/289 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N++ + +VG NAGKSTL+N VG KVSIV K QTTR + G+++ +++Q +FLDTP Sbjct: 3 NTKLAYIGIVGKPNAGKSTLINLLVGEKVSIVADKPQTTRQRILGVLTLEDAQFIFLDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G F K + M + TI+ +DIV V+DS EL + LLK + + +++LN Sbjct: 63 GWFPPKHLLGEYMQKTIKKTIEDSDIVLYVIDSSVELDEDNRTLLKFVKDQGKPYLVLLN 122 Query: 139 KIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V P+ L E + E+ + V E+ +SA G + ++ L P ++Y D Sbjct: 123 KIDMVSPKVLEERKKEVISLGVEEERIMEISALYGTNKELLIEKLKEIAPEGDFLYPPDM 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D F +EI REK+ ++E+P+S V ++ EE+K+G++L IR I VERP+QK Sbjct: 183 LTDQTDKFFISEIIREKIIHLTYQEVPHSVAVYVDEIEERKNGNLLYIRATIVVERPTQK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK+GQ +K I A+ EI ++ V+L L+VKV++ W P+ Sbjct: 243 AIIIGKDGQMLKKIGTLARMEIEAYYQKQVYLDLWVKVREKWRKKPEML 291 >gi|205374162|ref|ZP_03226962.1| GTP-binding protein Era [Bacillus coahuilensis m4-4] Length = 306 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 164/283 (57%), Gaps = 1/283 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+++ +SQIVF+D Sbjct: 7 QQAFKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTLADSQIVFID 66 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGI K M++++ +T+K DIV +VD + +++++ S+ + L+ Sbjct: 67 TPGIHKPKHKLGDFMMKVAQNTLKEVDIVLFMVDVAEGIGKGDEFIIEKLKNVSTPVFLV 126 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNKID + P+ L E + +SA +G+ D +L+ L +P P Y AD Sbjct: 127 LNKIDAIHPDELFSIIEEYRSRFEFTEIVPISALEGNNVDTLLDQLKKYMPEGPQYYPAD 186 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE-EKKDGSILIRQVIYVERPSQ 255 Q++D P +E+ REK +EIP+S VV +K + + +I + I VER SQ Sbjct: 187 QVTDHPEHFIVSELIREKALHLTREEIPHSIAVVVDKMKADNGRDTIHVMATIMVERDSQ 246 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ +I +L V+L L+VKVQKDW Sbjct: 247 KGIVIGKKGALLKEIGQRARIDIENLLGSKVYLELWVKVQKDW 289 >gi|303288864|ref|XP_003063720.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454788|gb|EEH52093.1| predicted protein [Micromonas pusilla CCMP1545] Length = 292 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/292 (40%), Positives = 169/292 (57%), Gaps = 20/292 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG NAGKST +N VG K+SIVT+K QTTR + G+VSE + Q+V LDTPG+ Sbjct: 2 RSGYVAIVGRPNAGKSTFMNALVGTKLSIVTYKPQTTRHRILGLVSEDDFQMVLLDTPGV 61 Query: 81 FNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE--IAKRSSRLIL 135 ++ ++KL M++ + + +AD++ +VD+ R+ N LL E + L + Sbjct: 62 M--REEFNKLDEMMLKSVRNAMANADVLLAIVDARRDPLGNFEGLLPERRPGDDPAPLGI 119 Query: 136 ILNKIDCVKPERLLEQAEIANKLV----FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 I+NK D LL EI K +E+ F VSA G G D V + S LP+ P Sbjct: 120 IINKCD------LLGVDEIRRKTFESYPGVERVFPVSALAGVGHDAVQRWAVSKLPVGPT 173 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG--SILIRQVIY 249 +Y D IS+ P F AEI REK+FL KE+PYS+ V +E +DG L+ +Y Sbjct: 174 LYPKDAISEHPERFFIAEIIREKIFLQYAKEVPYSAQVWVSSHKE-RDGIKKDLVIAKVY 232 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER SQ I++G G +K +S A+ +I + L +PV+L L VKV++ W D Sbjct: 233 VERKSQMGIIIGHEGAALKKLSTAARVDIEKFLGRPVYLDLSVKVREGWRSD 284 >gi|239637621|ref|ZP_04678593.1| GTP-binding protein Era [Staphylococcus warneri L37603] gi|239596839|gb|EEQ79364.1| GTP-binding protein Era [Staphylococcus warneri L37603] Length = 299 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 167/281 (59%), Gaps = 6/281 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 K M++++ +T+ D + +V+ + ++ I D+LK++ + + L+L Sbjct: 65 HKPKHKLGDYMMKVATNTLSEIDAIMFMVNVNEDIGRGDEYIMDMLKDL---KTPVFLVL 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID V P+ L+ + E + + + +SA +G D ++ L S LP P Y DQ Sbjct: 122 NKIDLVHPDALMPKIEKYQEYMDFTEIVPISALEGLNVDHFIDVLKSYLPEGPKYYPDDQ 181 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ISD P EI REK+ +EIP++ V ++ ++ + + I IYVER SQK Sbjct: 182 ISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMIKEDEDRVRIEATIYVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K + A+ +I +L V+L L+VKVQKDW Sbjct: 242 IVIGKGGKKLKEVGKRARHDIEMLLGSKVYLELWVKVQKDW 282 >gi|282878064|ref|ZP_06286869.1| GTP-binding protein Era [Prevotella buccalis ATCC 35310] gi|281299804|gb|EFA92168.1| GTP-binding protein Era [Prevotella buccalis ATCC 35310] Length = 293 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 160/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D + + N D L+++ + +IL++NKI Sbjct: 63 LKPNYKMQEYMLAFSESALADADILLYVTDVVEDPEKN-ADFLEKVRTMTIPVILVINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + + + E + L+ + +SA G D +L + LP +P + DQ++D Sbjct: 122 DASNQKTVGQLVEKWHALLPNAEILPISAANKFGVDMLLKRIQELLPDSPPYFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS V E+++E I I VIYVER SQK I++ Sbjct: 182 KPAKFFVSEIIREKILLYYDKEIPYSVEVRVEQFKESAK-QIHINAVIYVERESQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + + ++ V+L FVKV KDW Sbjct: 241 GHQGVALKKVSTEARKTLEKFFDKKVYLETFVKVDKDW 278 >gi|116617891|ref|YP_818262.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271908|sp|Q03Y33|ERA_LEUMM RecName: Full=GTPase Era gi|116096738|gb|ABJ61889.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 303 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 168/289 (58%), Gaps = 6/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+NR VG K++I++ K QTTR+ ++GI + ++Q+VF+DTPG+ Sbjct: 7 KSGFVAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDDAQVVFIDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 ++S M++ ++S + AD + VVD+ I D L+E+ +++ + L++ Sbjct: 67 HKPQNSLGDFMVKSAFSALHEADAIWFVVDASMARGRGDDFIIDRLQEV--KNTPIYLLI 124 Query: 138 NKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D + P LL+ A N + F +SAT+G ++L+ + S L P + AD Sbjct: 125 NKVDLLAPNDLLDVIASYQNDAPEWAEVFPISATEGDNVPELLDNIVSHLDEGPQYFDAD 184 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q++D P E+ REK+ +E+P+S VV +K + + I I+ I VERP+QK Sbjct: 185 QLTDHPERFVIGELIREKVLQLTRQEVPHSVAVVIDKIARENEEKIHIQASIIVERPTQK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G IK I A+K+I +L V L +VKV+ W P+ Sbjct: 245 NIIIGKQGAMIKDIGTRARKDIERLLGDKVFLETWVKVEPRWRDRPQAL 293 >gi|196248955|ref|ZP_03147655.1| GTP-binding protein Era [Geobacillus sp. G11MC16] gi|196211831|gb|EDY06590.1| GTP-binding protein Era [Geobacillus sp. G11MC16] Length = 302 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 166/279 (59%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +NR +G K++I++ K QTTR+ ++G+ ++ E+QI+F+DTPG+ Sbjct: 7 KSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDEAQIIFIDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ + ++ D++ +V++ +++ + + ++ + L++NKI Sbjct: 67 HKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLNEVNTPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL + L + +SA +G+ + +L + LP P Y DQI+D Sbjct: 127 DRVHPDELLPIIDRYKDLYPFAEIVPISALEGNNVERLLEQIKQRLPEGPQYYPPDQITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKIM 259 P AE+ REK +E+P+S VV E+ E +++ G++ + VI VER SQK I+ Sbjct: 187 HPEQFIIAELIREKALHLTREEVPHSIAVVVERIERREETGTVYVGAVIVVERDSQKGII 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G+ +K I A+ +I +L V L L+VKVQKDW Sbjct: 247 IGKQGRMLKEIGQRARADIEALLGSRVFLELWVKVQKDW 285 >gi|308069928|ref|YP_003871533.1| GTP-binding protein [Paenibacillus polymyxa E681] gi|305859207|gb|ADM70995.1| GTP-binding protein, era-like (Bex protein) [Paenibacillus polymyxa E681] Length = 300 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 99/278 (35%), Positives = 165/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ + G+ + +++QIVFLDTPGI Sbjct: 7 KSGFVAIVGRPNVGKSTLMNHVIGQKIAIMSDKPQTTRNKIHGVFTTEDTQIVFLDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M + +++T+ + V ++D+ L + +++ + + +IL+LNKI Sbjct: 67 HKRQSKLGDYMNQTAFNTLGEVEAVLFLIDAAEGLGGGDRFIAEQLKQVKTPVILVLNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++PE LL E KL + +SA G+ + +L + LP P Y DQI+D Sbjct: 127 DRIEPEALLPLIEQYRKLYDFAEIIPISAKMGNNVNTLLEQVQKYLPEGPQYYPDDQITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +E+P+S V+ E + + +G + I VI+VER SQK I++ Sbjct: 187 HPEQFVISELVREKILHMTREEVPHSIAVMIEDMKVQDNGVVHIMAVIFVERDSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + +A+++I +L + L L+VKV+KDW Sbjct: 247 GKQGAMLKEVGKQARQDIQNLLGSKIFLELWVKVKKDW 284 >gi|227432225|ref|ZP_03914221.1| GTP-binding protein Era [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351998|gb|EEJ42228.1| GTP-binding protein Era [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 303 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 168/289 (58%), Gaps = 6/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+NR VG K++I++ K QTTR+ ++GI + ++Q+VF+DTPG+ Sbjct: 7 KSGFVAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDDAQVVFIDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 ++S M++ ++S + AD + VVD+ I D L+E+ +++ + L++ Sbjct: 67 HKPQNSLGDFMVKSAFSALHEADAIWFVVDAAMARGRGDDFIIDRLQEV--KNTPIYLLI 124 Query: 138 NKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D + P LL+ A N + F +SAT+G ++L+ + S L P + AD Sbjct: 125 NKVDLLAPNDLLDVIASYQNDASEWAEVFPISATEGDNVPELLDNIVSHLDEGPQYFDAD 184 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q++D P E+ REK+ +E+P+S VV +K + + I I+ I VERP+QK Sbjct: 185 QLTDHPERFVIGELIREKVLQLTRQEVPHSVAVVIDKIARENEEKIHIQASIIVERPTQK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G IK I A+K+I +L V L +VKV+ W P+ Sbjct: 245 NIIIGKQGAMIKDIGTRARKDIERLLGDKVFLETWVKVEPRWRDRPQAL 293 >gi|283770643|ref|ZP_06343535.1| GTP-binding protein era [Staphylococcus aureus subsp. aureus H19] gi|283460790|gb|EFC07880.1| GTP-binding protein era [Staphylococcus aureus subsp. aureus H19] Length = 299 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 165/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+ D + +V+++ E+ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + +SA +G D ++ L + LP P Y DQISD Sbjct: 125 DLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L ++L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKIYLELWVKVQRDW 282 >gi|15643610|ref|NP_228656.1| GTP-binding protein Era [Thermotoga maritima MSB8] gi|8134443|sp|Q9WZV1|ERA_THEMA RecName: Full=GTPase Era gi|4981380|gb|AAD35929.1|AE001751_9 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 300 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL G N GKST +N +G KV IV+ K QTTR+ + I ++K+SQI+F+DTPGI Sbjct: 4 KSGFVALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ + +K D+V ++D+ + K + ++ I+ +NKI Sbjct: 64 HKPLHRLGEYMVKAAVQALKGVDLVLFMLDAADGFTKTDEHVAKIVNDSGTKTIIAVNKI 123 Query: 141 DCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D E+ E+A +V + +SA KG G +VL + LP P Y D ++ Sbjct: 124 DVAGEEKAKAVGELAKSMVENVVSVHYISALKGEGVFEVLEKIKEELPEGPQYYPEDMVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ AEI REK+F +E+P+S+ VV E+ +++ +G + IR IYVER SQK I+ Sbjct: 184 DRPLSFMAAEIIREKIFHLTRQEVPHSTAVVIEEIKDRPNGVLYIRANIYVERDSQKGIL 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNG IK I A++E+ ++ + V+L L VKV++ W Sbjct: 244 IGKNGSMIKKIGTLAREELEFLVGRKVYLDLNVKVKEKW 282 >gi|82751170|ref|YP_416911.1| GTP-binding protein Era [Staphylococcus aureus RF122] gi|123547823|sp|Q2YT12|ERA_STAAB RecName: Full=GTPase Era gi|82656701|emb|CAI81128.1| GTP-binding protein [Staphylococcus aureus RF122] Length = 299 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 164/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+ D + +V+++ E+ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + +SA G D ++ L + LP P Y DQISD Sbjct: 125 DLVHPDELMPKIEEYQSYMDFTEIVPISALDGLNVDHFIDVLKTYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDW 282 >gi|297735123|emb|CBI17485.3| unnamed protein product [Vitis vinifera] Length = 320 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 174/298 (58%), Gaps = 10/298 (3%) Query: 11 EHKDFVQD-NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E DF + N RSG VA++G N GKSTL N+ +G K+SIVT K QTTR + GI S E Sbjct: 10 EELDFASNPNHRSGYVAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPE 69 Query: 70 SQIVFLDTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 Q++ DTPG+ K HKL M++ S +AD V ++VD+ +E + I ++L+E Sbjct: 70 YQMILYDTPGVIEKK--MHKLDSMMMKNVRSATINADCVVVLVDACKEPQ-KIDEVLEEG 126 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + +L +L+LNK D +KP + ++ E K + +++ VSA G G DDV +++ Sbjct: 127 VGNLKDKLPTLLVLNKKDLIKPGEIAKKLEWYEKFIDVDEVIPVSAKYGQGVDDVKDWIL 186 Query: 184 STLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL 243 S LPL P Y D +S+ P F EI REK+F+ E+PY+ V ++ + Sbjct: 187 SKLPLGPAYYPKDIVSEHPERFFVGEIVREKIFMQYRNEVPYACQVNVVSYKTRPTAKDF 246 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I+ I VE+ SQK I++GK G+ +K ++ A+ +I + L++ V L + VKV+++W D Sbjct: 247 IQVEIVVEKNSQKIILIGKEGKALKLLATAARLDIEDFLQKKVFLEVEVKVKENWRQD 304 >gi|238924233|ref|YP_002937749.1| GTP-binding protein Era [Eubacterium rectale ATCC 33656] gi|238875908|gb|ACR75615.1| GTP-binding protein Era [Eubacterium rectale ATCC 33656] Length = 303 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 167/284 (58%), Gaps = 4/284 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDT 77 N +SG V ++G N GKSTL+NR +G K++I ++K QTTR+ ++ + ++ E QIVFLDT Sbjct: 4 NFKSGFVTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVFLDT 63 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI AK+ + M+ ++ T+ D+V +V+ + +++++ K ++ +ILI+ Sbjct: 64 PGIHKAKNKLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTPVILII 123 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D V+ E++LE + K+ + SA +G DDV+N + LP P Y D Sbjct: 124 NKVDTVEKEKVLEYIDTYRKVFDFAEIIPTSALRGQNTDDVINSIFKYLPYGPQFYDEDT 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK--KDGSIL-IRQVIYVERPS 254 I+D P AEI REK L+ E+P+ V ++ + + K GSI+ + I ER S Sbjct: 184 ITDQPERAICAEIIREKALHALNDEVPHGIAVGIDRMKTRKTKSGSIIDMDATIVCERDS 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ E+ +L+ V+L L+VKV+KDW Sbjct: 244 HKGIIIGKQGSMLKKIGTNARYEMERLLDCKVNLKLWVKVKKDW 287 >gi|242373872|ref|ZP_04819446.1| GTP-binding protein Era [Staphylococcus epidermidis M23864:W1] gi|242348426|gb|EES40028.1| GTP-binding protein Era [Staphylococcus epidermidis M23864:W1] Length = 300 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 164/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 6 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+R++ +T+ D + +V+ + ++ +++ + + + L+LNKI Sbjct: 66 HKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLVLNKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + +SA +G D ++ L S LP P Y DQISD Sbjct: 126 DLVHPDALMPKIEQYKEYMDFTDIIPISALEGLNVDHFIDVLKSYLPEGPKYYPDDQISD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 186 HPEQFVVSEIIREKILHLTSEEIPHAIGVNVDRMIKEDEDRVRIEATIYVERDSQKGIVI 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+ +I +L V+L L+VKVQ+DW Sbjct: 246 GKGGKKLKEVGKRARHDIEMLLGSKVYLELWVKVQRDW 283 >gi|291524971|emb|CBK90558.1| GTP-binding protein Era [Eubacterium rectale DSM 17629] gi|291529105|emb|CBK94691.1| GTP-binding protein Era [Eubacterium rectale M104/1] Length = 303 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 167/284 (58%), Gaps = 4/284 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDT 77 N +SG V ++G N GKSTL+NR +G K++I ++K QTTR+ ++ + ++ E QIVFLDT Sbjct: 4 NFKSGFVTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVFLDT 63 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI AK+ + M+ ++ T+ D+V +V+ + +++++ K ++ +ILI+ Sbjct: 64 PGIHKAKNKLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTPVILII 123 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D V+ E++LE + K+ + SA +G DDV+N + LP P Y D Sbjct: 124 NKVDTVEKEKVLEYIDTYRKVYDFAEIIPTSALRGQNTDDVINSIFKYLPYGPQFYDEDT 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK--KDGSIL-IRQVIYVERPS 254 I+D P AEI REK L+ E+P+ V ++ + + K GSI+ + I ER S Sbjct: 184 ITDQPERAICAEIIREKALHALNDEVPHGIAVGIDRMKTRKTKSGSIIDMDATIVCERDS 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ E+ +L+ V+L L+VKV+KDW Sbjct: 244 HKGIIIGKQGSMLKKIGTNARYEMERLLDCKVNLKLWVKVKKDW 287 >gi|153809062|ref|ZP_01961730.1| hypothetical protein BACCAC_03370 [Bacteroides caccae ATCC 43185] gi|149128395|gb|EDM19614.1| hypothetical protein BACCAC_03370 [Bacteroides caccae ATCC 43185] Length = 293 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 160/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + E QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDEMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D N ++ ++++ + + ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALTDADILLYVTDVVETPDKN-NEFMEKVRQMTVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L++ E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLTDQEKLVKLVEEWKELLPQAEIIPISAASKFNVDYVMKRIKELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS V E+++E+ I IR VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVAVEEFKEEA-KKIHIRAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++E+ + ++L +VKV KDW Sbjct: 241 GKQGKALKKVATEARRELERFFGKTIYLETYVKVDKDW 278 >gi|163791428|ref|ZP_02185837.1| GTP-binding protein Era [Carnobacterium sp. AT7] gi|159873292|gb|EDP67387.1| GTP-binding protein Era [Carnobacterium sp. AT7] Length = 299 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 106/290 (36%), Positives = 169/290 (58%), Gaps = 8/290 (2%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 NEHK SG V++VG N GKSTL+NR VG K++I++ K QTTR+ ++GI + Sbjct: 1 MNEHK--------SGFVSIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTTP 52 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 ESQIVF+DTPGI K M+ ++S + D++ +V+ + + +++ + Sbjct: 53 ESQIVFIDTPGIHKPKHRLGDFMVDSAFSAFREVDVILFMVNIAEKRGPGDNFIMERLKT 112 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 S + L+LNKID + P++LL E LV E+ +SA G+ + +L+ + LP Sbjct: 113 VKSPVFLVLNKIDKIHPDQLLPIIEDYRSLVDFEQVIPISAADGNNVETLLSEVTKYLPE 172 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P Y DQ++D P + +E+ REK+ +E+P+S VV E + + G + + I Sbjct: 173 GPQFYPDDQVTDHPEYFIVSELIREKVLELTREEVPHSVAVVVESMQRNELGKVQVHAAI 232 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VER SQK I++GK G+ +K I + A+++I +L ++L L+VKVQKDW Sbjct: 233 IVERSSQKGIIIGKGGKMLKDIGIRARRDIEVLLGDKIYLDLWVKVQKDW 282 >gi|329121358|ref|ZP_08249984.1| GTP-binding protein Era [Dialister micraerophilus DSM 19965] gi|327469767|gb|EGF15233.1| GTP-binding protein Era [Dialister micraerophilus DSM 19965] Length = 307 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 162/277 (58%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG +ALVG N GKSTL+N +G K+SIV+ QTTR+ + G+ + + SQIVFLDTPG+ Sbjct: 15 SGFIALVGRPNVGKSTLLNTVLGEKISIVSAHAQTTRNKITGVWNGENSQIVFLDTPGMH 74 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K +++ + + I DIV ++ LL + + + ++L+LNKID Sbjct: 75 KPKSKLGEVIRQSTVDAIGEVDIVVMLCACDDPPGAGDRYLLSLLENKKTPVVLVLNKID 134 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V +L++ + +++ ++ VSA G D+++ L LP P + D I+D Sbjct: 135 LVSEVAILKKIKQYSQMYNFKEIIPVSAQTGRNMDELMQVLEKMLPEGPKYFPDDMITDQ 194 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P EI REK+ L H+EIP++ V TE+++ +++G + IR IYVER SQK+I++G Sbjct: 195 PERIIVQEIVREKILLRTHEEIPHAIGVFTEEFKVRENGKVYIRCTIYVERESQKRIVIG 254 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G +K EA++EI +++ PV L L+VKV +DW Sbjct: 255 SKGSLLKDAGKEAREEIQKVVGSPVFLDLWVKVNRDW 291 >gi|217077014|ref|YP_002334730.1| GTP-binding protein Era [Thermosipho africanus TCF52B] gi|226741399|sp|B7IH25|ERA_THEAB RecName: Full=GTPase Era gi|217036867|gb|ACJ75389.1| era GTP-binding protein Era [Thermosipho africanus TCF52B] Length = 299 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/283 (38%), Positives = 167/283 (59%), Gaps = 9/283 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL G N GKS++VN VG K+ IV+ K QTTR+ + I + + QI+F+DTPGI Sbjct: 2 KSGFVALAGKPNVGKSSIVNAIVGKKILIVSDKPQTTRNRINVIHTTDDFQIIFVDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ + S +K D++ VVD+ + + + + ++ I ++NKI Sbjct: 62 HKPLYRLGEYMVKAAVSALKGVDLILTVVDAKEGVGKPERFVFDYVNQSKTKTIGVINKI 121 Query: 141 DCVKPERLLEQ--AEIANKL---VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D V +++ EQ EI N L V I KT SA +G G ++L+ + L P Y Sbjct: 122 DLVDAKKV-EQIYNEIKNSLENCVGIVKT---SAVRGEGIKELLDLIVENLEEGPQYYPE 177 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D P+ +EI REK+F H ++E+P+S V+ E+ +E+ +G + IR IYV+R SQ Sbjct: 178 DMITDRPLSFMASEIIREKIFHHTYEEVPHSVAVIIEEIKERDNGVLYIRANIYVDRNSQ 237 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G+ G IKTI EA+KEI ++ V L L VKV+KDW Sbjct: 238 KGIIIGQKGNMIKTIGQEARKEIEYLVGGKVFLDLHVKVKKDW 280 >gi|300778405|ref|ZP_07088263.1| GTP-binding protein Era [Chryseobacterium gleum ATCC 35910] gi|300503915|gb|EFK35055.1| GTP-binding protein Era [Chryseobacterium gleum ATCC 35910] Length = 291 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 164/278 (58%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG NAGKSTL+N+ +G K++IVT K QTTR + GI +E + QIVF DTPG+ Sbjct: 3 KAGFVNIVGKPNAGKSTLLNQLMGEKLAIVTQKAQTTRHRIFGIYNEDDLQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + M+ +++ AD+ +VD + + + L++++ K ++L+LNK+ Sbjct: 63 LDPKYGLQEKMMDFVKDSLQDADVFLFIVDVTDKAEPS-EFLIEKLNKIPVPVLLLLNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D L + E + + + +SA + +L + S LP P Y DQ +D Sbjct: 122 DQTDQAGLEKLVEEWHNRIPKAEILPISALNAFNTEVILPKIKSLLPENPPYYDKDQFTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F E REK+ L+ KEIPYS VVTE+++E K+G I I +IYVER +QK I++ Sbjct: 182 KPERFFVNETIREKILLNYDKEIPYSVEVVTEQFKE-KEGIIFIDSIIYVERDTQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G+ IK + EA+ ++ + + +HL LFVKV+KDW Sbjct: 241 GHKGEAIKKVGTEARLDLEKFFTKKIHLNLFVKVKKDW 278 >gi|78499699|gb|ABB45853.1| hypothetical protein [Eutrema halophilum] Length = 429 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 170/290 (58%), Gaps = 11/290 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG VA++G N GKSTL N+ +G K+SIVT K QTTR + GI S E Q++ DTP Sbjct: 128 NHRSGYVAVLGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTP 187 Query: 79 GIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE----IAKRSS 131 G+ K H+L M++ +AD V ++VD+ + + NI ++LKE + KR Sbjct: 188 GVIEKK--MHRLDTMMMKNVRDAAINADCVVVLVDACK-MPANIEEVLKEGLGNLEKRPP 244 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ++L++NK D +KP + ++ E K +++ VSA GHG +DV ++ S LP P Sbjct: 245 -MLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDVKEWILSKLPFGPP 303 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 Y D +S+ P F AEI REK+F+ E+PY+ V ++ + I+ + V+ Sbjct: 304 YYPKDIVSEHPERFFVAEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFIQVEVVVD 363 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + SQK I++GK G+ +KT++ A+ +I + L++ V L + VKV+++W D Sbjct: 364 KNSQKIILIGKEGKALKTLATAARLDIEDFLQKKVFLEVEVKVKENWRQD 413 >gi|56421023|ref|YP_148341.1| GTP-binding protein [Geobacillus kaustophilus HTA426] gi|56380865|dbj|BAD76773.1| GTP-binding protein [Geobacillus kaustophilus HTA426] Length = 302 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 167/284 (58%), Gaps = 3/284 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ +SG VA++G N GKST +NR +G K++I++ K QTTR+ ++G+ ++ ++QI+F+D Sbjct: 3 KEGYKSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDDAQIIFID 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ K M++++ + ++ D++ +V++ +++ + + + + L+ Sbjct: 63 TPGVHKPKHKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLKEVDTPVFLV 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V P+ LL + L + +SA +G+ D +L + LP P Y D Sbjct: 123 INKIDRVHPDELLPLIDRYKDLYPFAEIVPISALEGNNVDRLLEQIKERLPEGPQYYPPD 182 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS--ILIRQVIYVERPS 254 QI+D P AE+ REK +E+P+S VV E+ E+++GS + I VI VER S Sbjct: 183 QITDHPEQFIIAELIREKALHLTREEVPHSIAVVVERI-ERREGSPTVYISAVIVVERDS 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G+ +K I A+ +I +L V L L+VKVQKDW Sbjct: 242 QKGIIIGKQGRMLKEIGQRARADIEALLGSRVFLELWVKVQKDW 285 >gi|301300995|ref|ZP_07207158.1| GTP-binding protein Era [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851411|gb|EFK79132.1| GTP-binding protein Era [Lactobacillus salivarius ACS-116-V-Col5a] Length = 300 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 105/284 (36%), Positives = 173/284 (60%), Gaps = 2/284 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +Q+N SG VA++G N GKST +NR VG K++I++ K QTTR+ ++GI +E ++QIVF+ Sbjct: 1 MQNNFHSGFVAILGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGIYTEDDAQIVFI 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI M+ + ST+ D V +V++ ++ +++ + + L Sbjct: 61 DTPGIHKPHSRLGDFMVESALSTLNEVDAVLFMVNATQKRGRGDDFIIERLKNVKKPIYL 120 Query: 136 ILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++NKID + P++LL+ + N L + E F +SA +G+ C +++ L +TLP P Y Sbjct: 121 VINKIDQIHPDKLLQIMDDYRNTLDYAE-VFPISALEGNNCPELIESLVNTLPEGPQYYP 179 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 ADQI+D P E+ REK+ +E+P+S VV ++ + D +L++ I VER S Sbjct: 180 ADQITDHPERFIAGELIREKVLELTREEVPHSVAVVVDRIHREDDEKVLVQATIVVERNS 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G+ +K I ++A+K+I +L V+L L+VKVQ +W Sbjct: 240 QKGIIIGKGGKMLKQIGVKARKDIELMLGDKVYLELWVKVQPNW 283 >gi|225430700|ref|XP_002264259.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 435 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 174/298 (58%), Gaps = 10/298 (3%) Query: 11 EHKDFVQD-NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E DF + N RSG VA++G N GKSTL N+ +G K+SIVT K QTTR + GI S E Sbjct: 125 EELDFASNPNHRSGYVAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPE 184 Query: 70 SQIVFLDTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 Q++ DTPG+ K HKL M++ S +AD V ++VD+ +E + I ++L+E Sbjct: 185 YQMILYDTPGVIEKK--MHKLDSMMMKNVRSATINADCVVVLVDACKEPQ-KIDEVLEEG 241 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + +L +L+LNK D +KP + ++ E K + +++ VSA G G DDV +++ Sbjct: 242 VGNLKDKLPTLLVLNKKDLIKPGEIAKKLEWYEKFIDVDEVIPVSAKYGQGVDDVKDWIL 301 Query: 184 STLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL 243 S LPL P Y D +S+ P F EI REK+F+ E+PY+ V ++ + Sbjct: 302 SKLPLGPAYYPKDIVSEHPERFFVGEIVREKIFMQYRNEVPYACQVNVVSYKTRPTAKDF 361 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I+ I VE+ SQK I++GK G+ +K ++ A+ +I + L++ V L + VKV+++W D Sbjct: 362 IQVEIVVEKNSQKIILIGKEGKALKLLATAARLDIEDFLQKKVFLEVEVKVKENWRQD 419 >gi|317504952|ref|ZP_07962901.1| GTP-binding protein Era [Prevotella salivae DSM 15606] gi|315663944|gb|EFV03662.1| GTP-binding protein Era [Prevotella salivae DSM 15606] Length = 293 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 162/288 (56%), Gaps = 22/288 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ ++ QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTEDCQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M+ S S +K ADI+ V D + NI D L ++ + +IL++NKI Sbjct: 63 LKPNYKMQEMMLAFSESALKDADILLYVTDVVENPEKNI-DFLDKVKQLPIPVILLINKI 121 Query: 141 D----------CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D K LL AEI +SA G + ++ + LP +P Sbjct: 122 DESNQKELGTIVTKWHSLLPNAEI----------LPISAKNKFGVELLMKRIKELLPESP 171 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + DQ++D P F +E+ REK+ L+ KEIPYS V E+++E D SI I VIYV Sbjct: 172 AYFDKDQLTDKPAKFFVSEMIREKILLYYDKEIPYSVEVRVEQFKE-TDTSIHINAVIYV 230 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ER SQK I++G G +K +S EA+K + + ++ ++L FVKV KDW Sbjct: 231 ERDSQKGIIIGHKGIALKKVSSEARKALEKFFDKKIYLETFVKVDKDW 278 >gi|227890898|ref|ZP_04008703.1| GTP-binding protein Era [Lactobacillus salivarius ATCC 11741] gi|227867307|gb|EEJ74728.1| GTP-binding protein Era [Lactobacillus salivarius ATCC 11741] Length = 300 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 105/284 (36%), Positives = 173/284 (60%), Gaps = 2/284 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +Q+N SG VA++G N GKST +NR VG K++I++ K QTTR+ ++GI +E ++QIVF+ Sbjct: 1 MQNNFHSGFVAILGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGIYTEDDAQIVFI 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI M+ + ST+ D V +V++ ++ +++ + + L Sbjct: 61 DTPGIHKPHSRLGDFMVESALSTLNEVDAVLFMVNATQKRGRGDDFIIERLRNVKKPIYL 120 Query: 136 ILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++NKID + P++LL+ + N L + E F +SA +G+ C +++ L +TLP P Y Sbjct: 121 VINKIDQIHPDKLLQIMDDYRNTLDYAE-VFPISALEGNNCPELIESLVNTLPEGPQYYP 179 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 ADQI+D P E+ REK+ +E+P+S VV ++ + D +L++ I VER S Sbjct: 180 ADQITDHPERFIAGELIREKVLELTREEVPHSVAVVVDRIHREDDEKVLVQATIVVERNS 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G+ +K I ++A+K+I +L V+L L+VKVQ +W Sbjct: 240 QKGIIIGKGGKMLKQIGVKARKDIELMLGDKVYLELWVKVQPNW 283 >gi|95930678|ref|ZP_01313412.1| GTP-binding protein Era [Desulfuromonas acetoxidans DSM 684] gi|95133330|gb|EAT14995.1| GTP-binding protein Era [Desulfuromonas acetoxidans DSM 684] Length = 303 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 166/280 (59%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V++VG N GKSTL+N+ +G K++I +K QTTR+ + GI SE +Q++FLDTPGI Sbjct: 12 RSGFVSIVGRPNVGKSTLLNQILGQKIAITANKPQTTRNRILGIHSEDNAQVLFLDTPGI 71 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A ++ M+ + S + D+V +V++ + +L +A+ ++L++NK+ Sbjct: 72 HKATGKLNQYMVDQALSACRGVDVVVFLVEATDRVGGGDDFILDVLAQSDIPVVLVINKV 131 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V+ ++LL A+ A + F E +SA G G + ++ + LP P Y + ++ Sbjct: 132 DLVEKDKLLPLIAQYAERFDFKE-IIPLSALNGSGVERLVASVRDMLPEGPPYYPEEMVT 190 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 DLP E+ REK+ H+E+PY V + +EE+ +++ I+ IYV R + K+I Sbjct: 191 DLPERFIVGEMIREKILRKTHQEVPYGVAVQVDNFEERPGKNLIAIQATIYVGRDAHKRI 250 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G IK + +A+KEI + L+ V L LFVKV+K+W Sbjct: 251 LVGKGGSMIKQLGQDARKEIEQFLDARVFLELFVKVKKNW 290 >gi|309388936|gb|ADO76816.1| GTP-binding protein Era [Halanaerobium praevalens DSM 2228] Length = 293 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 5/282 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG V ++G N GKSTLVN +G K++I++ + QTTR+ ++ I +E E QI+F+DTP Sbjct: 2 NYKSGFVTVIGRPNVGKSTLVNTLIGEKINIISPRPQTTRNSIKAIYTEAEGQIIFIDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI A++ K M +++++ DI+ ++D N + K++ +I ++N Sbjct: 62 GIHEARNELDKYMQGEAYNSLDGIDIIIFILDGSTYWGKNDEMIYKQLKSSKQDIIYVMN 121 Query: 139 KIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID + + L++ Q E + K+ ++ +SA D +L + + LP P Y D Sbjct: 122 KIDKMSNKDLIKRQKEYSQKVG--QEVIPISALNNKNTDTLLTEIFNRLPEGPQYYPDDM 179 Query: 198 ISD-LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 I+D + F F AE+ REK+F +E+PY V+ E+ +E+ + IR IYVE+ S K Sbjct: 180 ITDQIERFVF-AEMIREKIFYLTREEVPYGVAVLVEEVKERDNDDYYIRANIYVEKKSHK 238 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GKNG+ +K I +A+KEI +++ V+L L+VKV KDW Sbjct: 239 GIIIGKNGRMLKKIGSQARKEIEGLMQTKVYLDLWVKVLKDW 280 >gi|297584643|ref|YP_003700423.1| GTP-binding protein Era [Bacillus selenitireducens MLS10] gi|297143100|gb|ADH99857.1| GTP-binding protein Era [Bacillus selenitireducens MLS10] Length = 302 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 164/289 (56%), Gaps = 1/289 (0%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + +SG ALVG N GKSTL+N+ +G K++I++ K QTTR+ ++G+++++ QIVF+DT Sbjct: 4 EEQKSGFAALVGRPNVGKSTLLNQVLGQKIAIMSDKPQTTRNRIQGVLTDERGQIVFIDT 63 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI K M +L+ ++ D+V +VD+ +++++ + + L++ Sbjct: 64 PGIHKPKHRLGDFMTKLAQQALREVDVVLFLVDAKEGKGAGDEYIIRKLENLETPVFLVI 123 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID V PE LL L + VSA G+ + +L + L P Y DQ Sbjct: 124 NKIDEVHPEELLSIIAGYKDLYPFAEVIPVSALNGNNVETLLEQVFKYLEPGPMYYPEDQ 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-ILIRQVIYVERPSQK 256 ++D P +E+ REK+ +E+P+S V E+ + +K G+ + + V+ VER SQK Sbjct: 184 VTDHPERFLISEMIREKILHMTEEEVPHSIAVEIEQIKRRKKGNKVYVAAVVIVERKSQK 243 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G IK + +A+++I +L + L LFVKV++DW + P+ Sbjct: 244 GIIIGKQGAMIKEVGKQAREDIKNLLGTDIFLELFVKVEEDWRNKPRTL 292 >gi|148269225|ref|YP_001243685.1| GTP-binding protein Era [Thermotoga petrophila RKU-1] gi|189037683|sp|A5IIT6|ERA_THEP1 RecName: Full=GTPase Era gi|147734769|gb|ABQ46109.1| GTP-binding protein Era [Thermotoga petrophila RKU-1] Length = 300 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 164/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL G N GKST +N +G KV IV+ K QTTR+ + I ++++SQI+F+DTPGI Sbjct: 4 KSGFVALAGKPNVGKSTFINVVMGRKVVIVSDKPQTTRNRINCIYTDRDSQIIFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ + +K D++ ++D+ + K +++ ++ I+ +NKI Sbjct: 64 HKPLHRLGEYMVKAAVQALKGVDLILFMLDAADGFTKTDEHVAKIVSESGTKTIIAVNKI 123 Query: 141 DCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D E+ ++A +V + +SA KG G +VL + LP P Y D ++ Sbjct: 124 DVAGEEKAKAVGQLAKSMVENVVSVHYISALKGEGVFEVLEKIKEELPEGPQYYPEDMVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ AEI REK+F +E+P+S+ VV E+ +++ +G + IR IYVER SQK I+ Sbjct: 184 DRPLSFMAAEIIREKIFHLTRQEVPHSTAVVIEEIKDRPNGVLYIRANIYVERDSQKGIL 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNG IK I A++E+ ++ + V+L L VKV+++W Sbjct: 244 IGKNGSMIKKIGTLAREELEFLVGRKVYLDLNVKVKENW 282 >gi|52081076|ref|YP_079867.1| GTP-binding protein Era [Bacillus licheniformis ATCC 14580] gi|52786455|ref|YP_092284.1| GTP-binding protein Era [Bacillus licheniformis ATCC 14580] gi|319644966|ref|ZP_07999199.1| GTP-binding protein era [Bacillus sp. BT1B_CT2] gi|52004287|gb|AAU24229.1| GTP-binding protein [Bacillus licheniformis ATCC 14580] gi|52348957|gb|AAU41591.1| Era [Bacillus licheniformis ATCC 14580] gi|317392775|gb|EFV73569.1| GTP-binding protein era [Bacillus sp. BT1B_CT2] Length = 301 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 165/282 (58%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q++ +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+++ SQ +F+D Sbjct: 3 QESFKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTDTSQTIFID 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGI K M++++ +T+K D++ ++++ +++ + + + LI Sbjct: 63 TPGIHKPKHKLGDFMMKVAHNTLKEVDLILFMINAEEGYGKGDEFIIERLKGVKTPVFLI 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID + P+ LL + ++ +SA +G+ D +L + LP P Y +D Sbjct: 123 VNKIDRIHPDELLVLIDEYRTRYPFQEIVPISALEGNNIDTLLKQIEDYLPEGPQFYPSD 182 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q++D P +E+ REK+ +EIP+S V E +E+++GS+ + I VER SQK Sbjct: 183 QVTDHPERFIISELIREKVLHLTREEIPHSIAVSIESIQERENGSVYVSATIVVERDSQK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+ +I +L V L L+VKVQKDW Sbjct: 243 GIVIGKRGSLLKEIGKRARTDIEALLGSSVFLELWVKVQKDW 284 >gi|327403776|ref|YP_004344614.1| GTP-binding protein Era-like-protein [Fluviicola taffensis DSM 16823] gi|327319284|gb|AEA43776.1| GTP-binding protein Era-like-protein [Fluviicola taffensis DSM 16823] Length = 291 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 109/278 (39%), Positives = 160/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +S V +VG+ N GKSTL+N VG K+SIVT K QTTR + G+V+ + QIVF DTPG+ Sbjct: 4 KSAFVNIVGSPNVGKSTLMNGLVGEKLSIVTSKAQTTRHRIHGLVNGDDHQIVFSDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA H+ M+ S+ K ADI+ + D E ++N + L+ I K ++LILNKI Sbjct: 64 VNASYKLHEAMMSYVESSFKDADILLFITDM-SENEMNHKETLERIVKLKIPVLLILNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +L E+ + + V + SA + + + + P P + D++SD Sbjct: 123 DLADQTKLEERVQYWKEKVPNAEIIPTSALHKFNINVIWDRILQLAPEGPAYFDKDELSD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P+ F AE+ REK+FLH KE+PY+ V E ++E ++ + IR +I VER SQK I++ Sbjct: 183 RPVRFFVAEMIREKIFLHCDKEVPYACQVEIESYQEAENIT-HIRALIIVERDSQKGILI 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K I E++ ++ L Q V L FVKV KDW Sbjct: 242 GKKGDMLKRIGRESRLDMEAFLGQKVFLETFVKVDKDW 279 >gi|28378610|ref|NP_785502.1| GTP-binding protein Era [Lactobacillus plantarum WCFS1] gi|254556825|ref|YP_003063242.1| GTP-binding protein Era [Lactobacillus plantarum JDM1] gi|300768138|ref|ZP_07078043.1| GTP-binding protein Era [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|38257324|sp|Q88VS0|ERA_LACPL RecName: Full=GTPase Era gi|28271446|emb|CAD64351.1| GTP-binding protein [Lactobacillus plantarum WCFS1] gi|254045752|gb|ACT62545.1| GTP-binding protein Era [Lactobacillus plantarum JDM1] gi|300494202|gb|EFK29365.1| GTP-binding protein Era [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 302 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 163/277 (58%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA++G N GKSTL+NR VG KV+I++ K QTTR+ ++GI + ++Q+VF+DTPGI Sbjct: 9 SGFVAIIGRPNVGKSTLLNRVVGQKVAIMSDKAQTTRNRIQGIYTTADTQMVFIDTPGIH 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 M++ + ST+ D V ++++ + ++ + + L++NKID Sbjct: 69 KPHSRLGDFMVKSALSTLGEVDAVLFMINADERRGAGDNFIIDRLKTVKQPIYLVINKID 128 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V P+ LLE + + ++ + +SA +G+ D++L L LP P Y +DQI+D Sbjct: 129 QVHPDHLLEIMDQYKDALPWKEVYPISALEGNNVDELLTTLKGQLPEGPQYYPSDQITDH 188 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P +E+ REK+ +E+P+S+ VV + + + + I ++ I +ER SQK I++G Sbjct: 189 PERFIISELIREKVLELTRQEVPHSTAVVIDSIKRQDEEKIHVQATIIIERSSQKGIIIG 248 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K G +K I A+++I +L V+L L+VKVQ++W Sbjct: 249 KGGSMLKKIGSLARRDIEHLLGDKVYLELWVKVQENW 285 >gi|299822890|ref|ZP_07054776.1| GTP-binding protein Era [Listeria grayi DSM 20601] gi|299816419|gb|EFI83657.1| GTP-binding protein Era [Listeria grayi DSM 20601] Length = 301 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 102/280 (36%), Positives = 165/280 (58%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++++T + D++ V+D+ L +++++ + + L++NKI Sbjct: 66 HKPKHKLGDFMVKIAFNTFQEVDLIYFVIDASTGLGRGDEFIIEKLKNVDTPVFLLINKI 125 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + P+ LLE A K+ F E +SA +G+ ++L L P Y DQI+ Sbjct: 126 DLISPDALLELIASYREKMEFTE-IIPISALQGNNVPNLLTETNEHLDEGPMYYPKDQIT 184 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKI 258 D P +E+ RE++ +E+P+S VV E E+ K + I I VER +QK I Sbjct: 185 DHPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTIMATIIVERSTQKGI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK GQ +K I + A+KEI ++ V L ++VKVQK+W Sbjct: 245 IIGKQGQMLKQIGMRARKEIELLMGSKVFLEIWVKVQKNW 284 >gi|212690522|ref|ZP_03298650.1| hypothetical protein BACDOR_00004 [Bacteroides dorei DSM 17855] gi|212666871|gb|EEB27443.1| hypothetical protein BACDOR_00004 [Bacteroides dorei DSM 17855] Length = 293 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI++ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNLLVGERISIATFKSQTTRHRIMGILNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D + N+ D ++++ ++L++NKI Sbjct: 63 VKPNYKLQESMLNFSESALVDADILLYVTDVVEKTDKNV-DFIEKVRNVKVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E L++ E ++ + + +SAT D V+ + LP +P + DQ +D Sbjct: 122 DLTNQEDLVKLVEAWHEQLPQAEIIPISATSKFNVDTVMKRIRELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E ++E SI I VIYVER SQK I++ Sbjct: 182 KPARFFVTEIIREKILLYYDKEIPYSVEVVVEHFKEDA-KSIHINAVIYVERESQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA+K + ++ ++L FVKV KDW Sbjct: 241 GKQGRALKKVATEARKTLEHFFQKSIYLETFVKVDKDW 278 >gi|325295030|ref|YP_004281544.1| GTP-binding protein Era-like-protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065478|gb|ADY73485.1| GTP-binding protein Era-like-protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 306 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 108/284 (38%), Positives = 170/284 (59%), Gaps = 6/284 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+N F+G KV+IVT K QTTR + G+ K++QIVFLDTPGI Sbjct: 9 KSGYVAILGRPNVGKSTLLNSFLGTKVAIVTDKPQTTRHRIIGVKHLKDAQIVFLDTPGI 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILIL 137 K ++ M +++ I ADI+ ++D+ E+ I + E ++ +++I+++ Sbjct: 69 HKEKFELNRYMNEIAFGVIPDADIILFLIDARSGFTEVDKKILQKIGEEKRKDTKVIVVI 128 Query: 138 NKIDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID V E LL EI + F+ +SAT+G D +L+ L LP P Y Sbjct: 129 NKIDGVPKEELLPLIDEIHKEFPFVSDIVPLSATRGTNLDRLLDLLVKYLPEGPKYYEDH 188 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQV-IYVERPS 254 ++D+P+ + AEI REK+ L +E+P++ V V KD ++L+ I VE+ S Sbjct: 189 MLTDMPLEQYVAEIIREKIMLLTREEVPHAVTVQVLNIQPGDKDPNMLVIDADIVVEKDS 248 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK GQ +K I A++E+ ++L + V+L L+VKV++ W Sbjct: 249 QKAIVIGKGGQRLKRIGKLAREELEQLLGKRVYLRLWVKVKEGW 292 >gi|253732220|ref|ZP_04866385.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724009|gb|EES92738.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 299 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 165/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+ D + +V+++ E+ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + +SA +G D ++ L + LP P Y DQISD Sbjct: 125 DLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P EI REK+ +EIP++ V ++ ++ + + I I+VER SQK I++ Sbjct: 185 HPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIFVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDW 282 >gi|298373637|ref|ZP_06983626.1| GTP-binding protein Era [Bacteroidetes oral taxon 274 str. F0058] gi|298274689|gb|EFI16241.1| GTP-binding protein Era [Bacteroidetes oral taxon 274 str. F0058] Length = 297 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 161/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G V +VG N GKSTL+N VG ++SI+T K QTTR + GIV+ ++ QIV+ DTPG+ Sbjct: 3 RAGFVNIVGNPNVGKSTLMNALVGERISIITSKAQTTRHRIMGIVNGEDFQIVYSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M S S +K ADI+ V D + N D L+++ S+ +++NKI Sbjct: 63 LKPNYKLQESMREFSDSALKDADILLYVTDVADNCEKN-ADFLEKVKHIGSKTFVMINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + +RLL+ + + + + +SA + G +L + LP +P + D ++D Sbjct: 122 DLIDEQRLLKLVDFWHTALPEAEIVPISAQERFGISQLLKRIVELLPESPPYFDKDALTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L KE+PYS V E+++E+++ I I VIY ER SQK I++ Sbjct: 182 RPERFFVNEIIREKILLCYDKEVPYSVEVAVEEFKEEEN-IINISAVIYCERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNG IK I A+K+I ++ V L L+VKV+KDW Sbjct: 241 GKNGLAIKKIGSAARKDIEAFFQKKVFLQLYVKVEKDW 278 >gi|319400903|gb|EFV89122.1| GTP-binding protein Era [Staphylococcus epidermidis FRI909] Length = 299 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 164/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+R++ +T+ D + +V+ + ++ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + +SA +G D ++ L S LP P Y +QISD Sbjct: 125 DLVHPDTLMPKIEQYQSYMDFTDIIPISALEGLNVDHFIDVLKSFLPEGPKYYPDNQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVSEIIREKILHLTSEEIPHAIGVNVDRMIKEDEDKVRIEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDW 282 >gi|57867009|ref|YP_188710.1| GTP-binding protein Era [Staphylococcus epidermidis RP62A] gi|81674466|sp|Q5HNY0|ERA_STAEQ RecName: Full=GTPase Era gi|57637667|gb|AAW54455.1| GTP-binding protein Era [Staphylococcus epidermidis RP62A] Length = 299 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 164/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+R++ +T+ D + +V+ + ++ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + +SA +G D ++ L S LP P Y +QISD Sbjct: 125 DLVHPDTLMPKIEQYQSYMDFTDIIPISALEGLNVDHFIDVLKSFLPEGPKYYPDNQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVSEIIREKILHLTSEEIPHAIGVNVDRMIKEDEDRVRIETTIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDW 282 >gi|322383675|ref|ZP_08057426.1| Era-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151887|gb|EFX44830.1| Era-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 300 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 102/278 (36%), Positives = 160/278 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N+ +G K++I++ K QTTR+ + G+ + + +QIVFLDTPGI Sbjct: 8 KSGFVALIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTEHAQIVFLDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++++ ST+ D + +VD + +++++ + +IL+LNKI Sbjct: 68 HKPQSKLGDYMMKVAHSTLAEVDAILFLVDVAEGIGGGDRFIIEQLKSVQTPVILVLNKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V PE LL +L + VSA +G+ +L + L P Y ADQ++D Sbjct: 128 DKVHPEDLLPVISTYKELYPFTEIVPVSALQGNNVTTMLEQITKYLEEGPQYYPADQVTD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +EIP+S V E +++G + I VI+VER SQK I++ Sbjct: 188 HPEQFVVAELIREKILHLTREEIPHSIAVTIEDIRVEENGVVRISAVIFVERDSQKGIII 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K I +A+ +I +L L L+VKV+KDW Sbjct: 248 GKQGALLKQIGQQARHDIEALLGTKTFLELWVKVKKDW 285 >gi|27468172|ref|NP_764809.1| GTP-binding protein Era [Staphylococcus epidermidis ATCC 12228] gi|251810984|ref|ZP_04825457.1| GTP-binding protein Era [Staphylococcus epidermidis BCM-HMP0060] gi|282876007|ref|ZP_06284874.1| GTP-binding protein Era [Staphylococcus epidermidis SK135] gi|293366472|ref|ZP_06613149.1| GTP-binding protein Era [Staphylococcus epidermidis M23864:W2(grey)] gi|38257330|sp|Q8CP21|ERA_STAES RecName: Full=GTPase Era gi|27315718|gb|AAO04853.1|AE016748_87 GTP-binding protein (Era/TrmE family) [Staphylococcus epidermidis ATCC 12228] gi|251805494|gb|EES58151.1| GTP-binding protein Era [Staphylococcus epidermidis BCM-HMP0060] gi|281295032|gb|EFA87559.1| GTP-binding protein Era [Staphylococcus epidermidis SK135] gi|291319241|gb|EFE59610.1| GTP-binding protein Era [Staphylococcus epidermidis M23864:W2(grey)] gi|329725360|gb|EGG61843.1| ribosome biogenesis GTPase Era [Staphylococcus epidermidis VCU144] gi|329735268|gb|EGG71560.1| ribosome biogenesis GTPase Era [Staphylococcus epidermidis VCU045] gi|329737216|gb|EGG73470.1| ribosome biogenesis GTPase Era [Staphylococcus epidermidis VCU028] Length = 299 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 164/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+R++ +T+ D + +V+ + ++ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + +SA +G D ++ L S LP P Y +QISD Sbjct: 125 DLVHPDTLMPKIEQYQSYMDFTDIIPISALEGLNVDHFIDVLKSFLPEGPKYYPDNQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +EI REK+ +EIP++ V ++ ++ + + I IYVER SQK I++ Sbjct: 185 HPEQFVVSEIIREKILHLTSEEIPHAIGVNVDRMIKEDEDRVRIEATIYVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQ+DW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQRDW 282 >gi|291563937|emb|CBL42753.1| GTP-binding protein Era [butyrate-producing bacterium SS3/4] Length = 300 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 157/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + +++ QI+FLDTPGI Sbjct: 6 KSGFVTLIGRPNVGKSTLMNHLIGQKIAITSEKPQTTRNRIQTVYTDEHGQIIFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ ++ T++ D++ +V+ + +LK + + +IL++NKI Sbjct: 66 HKAKNKLGEYMVNVAEHTLREVDVILWLVEPGTYIGSGEQHILKVLQTVKTPVILVINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VK E +L+ E ++ VSA K D +++ + LP P Y D ++D Sbjct: 126 DTVKKEDILKTIETYKDAYHFKEVIPVSAMKKTNTDTLIHTIFQYLPEGPQYYDEDTVTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 PM AE+ REK + EIP+ V E+ E+ +G I I ER S K I++ Sbjct: 186 QPMRQIAAELIREKALRMMSDEIPHGIAVTIERMTERDNGMFDIDATIICERESHKGIVI 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK GQ +K I A+ EI +++ V+L L+VKV+K+W Sbjct: 246 GKGGQMLKRIGTSARIEIENLMDTKVNLKLWVKVRKEW 283 >gi|281411523|ref|YP_003345602.1| GTP-binding protein Era [Thermotoga naphthophila RKU-10] gi|281372626|gb|ADA66188.1| GTP-binding protein Era [Thermotoga naphthophila RKU-10] Length = 300 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL G N GKST +N +G KV IV+ K QTTR+ + I ++K+SQI+F+DTPGI Sbjct: 4 KSGFVALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ + +K D+V ++D+ + + + ++ I+ +NKI Sbjct: 64 HKPLHRLGEYMVKAAVQALKGVDLVLFMLDAADGFTKTDEHVAEIVNDSGTKTIIAVNKI 123 Query: 141 DCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D E+ E+A +V + +SA KG G +VL + LP P Y D ++ Sbjct: 124 DVAGEEKAKAVGELAKSMVENVVSVHYISALKGEGVFEVLEKIKEELPEGPQYYPEDMVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ AEI REK+F +E+P+S+ VV E+ +++ +G + IR IYVER SQK I+ Sbjct: 184 DRPLSFIAAEIIREKIFHLTRQEVPHSTAVVIEEIKDRPNGVLYIRANIYVERDSQKGIL 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNG IK I A++E+ ++ + V+L L VKV++ W Sbjct: 244 IGKNGSMIKKIGTLAREELEFLVGRKVYLDLNVKVKEKW 282 >gi|15613930|ref|NP_242233.1| Era/ThdF family GTP-binding protein [Bacillus halodurans C-125] gi|13959358|sp|Q9KD52|ERA_BACHD RecName: Full=GTPase Era gi|10173983|dbj|BAB05086.1| GTP-binding protein (Era/ThdF family) [Bacillus halodurans C-125] Length = 304 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 167/284 (58%), Gaps = 1/284 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKSTL+N +G K++I++ K QTTR+ ++G+ + ++SQIVF+DTPGI Sbjct: 9 KSGFVSIIGRPNVGKSTLLNHVIGQKIAIMSDKPQTTRNKIQGVYTSEDSQIVFIDTPGI 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D++ VVD +++ + + + +IL++NKI Sbjct: 69 HKPKHKLGDFMMKVAQNTLKEVDLILYVVDGAEAFGPGEEFIIERLKEAKTPVILVINKI 128 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL E E+ VSA +G+ +L + L P Y +DQ++D Sbjct: 129 DKVHPDDLLSLIETYRHKHEFEEVVPVSALQGNNVPTLLLEITKHLSEGPQYYPSDQVTD 188 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK-DGSILIRQVIYVERPSQKKIM 259 P AE+ REK+ +EIP+S VV E+ + ++ ++ I I VER SQK I+ Sbjct: 189 HPERFVIAELIREKVLHLTREEIPHSIAVVIEQIKRRQHQDTVYIGATIVVERSSQKGII 248 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +GK G+ +K + +A+ +I +L V L L+VKVQKDW + P+ Sbjct: 249 IGKQGKMLKEVGQQARADIEALLGSKVFLELWVKVQKDWRNKPQ 292 >gi|253576082|ref|ZP_04853414.1| GTP-binding protein Era [Paenibacillus sp. oral taxon 786 str. D14] gi|251844425|gb|EES72441.1| GTP-binding protein Era [Paenibacillus sp. oral taxon 786 str. D14] Length = 300 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 102/278 (36%), Positives = 161/278 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ + G+ + +E QIVFLDTPGI Sbjct: 7 KSGFVAIVGRPNVGKSTLMNHIIGQKIAIMSDKPQTTRNKIHGVYTSEEMQIVFLDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M + +T+ + V +VD+ L +++ + + +IL+LNKI Sbjct: 67 HKRQSKLGDYMNTTALNTLGEVEAVLFLVDAAEGLGGGDRFIIERLKDVRTPVILVLNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V+PE+LL E +KL + +SA G+ + +L + LP P Y DQ++D Sbjct: 127 DRVEPEQLLPLIEEYSKLYPFSEIVPISAMLGNNVNRLLEQIGKYLPEGPQYYPEDQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S V E +++G + I VI+VER SQK I++ Sbjct: 187 HPEQFVCAELIREKILHLTREEVPHSIAVTIEDMRVQENGVVYISAVIFVERDSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + A+++I +L + L L+VKV+KDW Sbjct: 247 GKQGALLKEVGKLARQDIENLLGSKIFLELWVKVKKDW 284 >gi|167765448|ref|ZP_02437561.1| hypothetical protein BACSTE_03838 [Bacteroides stercoris ATCC 43183] gi|167697076|gb|EDS13655.1| hypothetical protein BACSTE_03838 [Bacteroides stercoris ATCC 43183] Length = 293 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 160/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D E +D ++++++ ++L++NKI Sbjct: 63 LKPTYKLQESMLNFSSSALTDADVLLYVTDV-VETPDKHNDFVEKVSRMEVPVLLLVNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L+E E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLSNQEKLVELVEAWKELLPNAEIIPISAATKFNVDYVMKRIKELLPDSPPYFDKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E ++ I I VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEQFKE-EEKKIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + + L FVKV KDW Sbjct: 241 GKQGKALKKVATEARRDLERFFGKTIFLETFVKVDKDW 278 >gi|319790169|ref|YP_004151802.1| GTP-binding protein Era [Thermovibrio ammonificans HB-1] gi|317114671|gb|ADU97161.1| GTP-binding protein Era [Thermovibrio ammonificans HB-1] Length = 305 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 176/289 (60%), Gaps = 6/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL+N +G KV+IVT K QTTR + G+ K++QIVFLDTPGI Sbjct: 8 RSGYVAILGRPNVGKSTLLNSLLGTKVAIVTDKPQTTRHRIVGVKHLKDAQIVFLDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSRLILIL 137 K ++ M +++S + ADI+ ++D+ + L +L++I ++ +++I+++ Sbjct: 68 HKEKFELNRYMNEIAFSVVPDADIILFLIDARQGLTEADRKILQKIGEEKRKDTKVIVVI 127 Query: 138 NKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID V E LL EI + F+++ +SA++G D +L L LP P Y Sbjct: 128 NKIDGVNKEELLPLIEEIHKEFPFVDEIIPISASRGTNLDRLLELLLKYLPEGPKYYEEH 187 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSC--VVTEKWEEKKDGSILIRQVIYVERPS 254 ++D P+ F AEI REK+ L +E+P+++ VV + +K ++I I VE+ S Sbjct: 188 MVTDQPLEQFIAEIIREKIMLLTREEVPHATTVQVVNIQPGDKNPNMLVIDADIIVEKDS 247 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++GK GQ +K I A++E+ ++L + V+L L+VKV++DW P+ Sbjct: 248 QKAIIIGKGGQRLKKIGQLAREELEQLLGKRVYLRLWVKVKEDWRSRPE 296 >gi|260910018|ref|ZP_05916701.1| GTP-binding protein Era [Prevotella sp. oral taxon 472 str. F0295] gi|260635848|gb|EEX53855.1| GTP-binding protein Era [Prevotella sp. oral taxon 472 str. F0295] Length = 293 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 108/278 (38%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ E QIVF DTPGI Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEVQIVFSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D + + N D L+++ ++L++NKI Sbjct: 63 LKPNYKLQESMLAFSVSALNDADVLLYVTDVVEDPEKN-ADFLEKVRGMKIPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + E + L+ + +SA G D +L + LP +P + DQ++D Sbjct: 122 DESDQKSLGDIVERWHALLPNAEILPISAKNKFGTDLLLRRIQELLPESPPYFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS V E+++E + I I VIYVER SQK I++ Sbjct: 182 KPARFFVSEIIREKILLYYDKEIPYSVEVKVERFKE-TEKKININAVIYVERESQKGIVI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + ++ V+L FVKV KDW Sbjct: 241 GHQGVALKKVSTEARKALERFFDKEVYLETFVKVDKDW 278 >gi|150003044|ref|YP_001297788.1| GTP-binding protein Era [Bacteroides vulgatus ATCC 8482] gi|254883682|ref|ZP_05256392.1| GTP-binding protein Era [Bacteroides sp. 4_3_47FAA] gi|294775668|ref|ZP_06741176.1| GTP-binding protein Era [Bacteroides vulgatus PC510] gi|319642180|ref|ZP_07996840.1| GTP-binding protein [Bacteroides sp. 3_1_40A] gi|149931468|gb|ABR38166.1| putative GTP-binding protein [Bacteroides vulgatus ATCC 8482] gi|254836475|gb|EET16784.1| GTP-binding protein Era [Bacteroides sp. 4_3_47FAA] gi|294450512|gb|EFG19004.1| GTP-binding protein Era [Bacteroides vulgatus PC510] gi|317386166|gb|EFV67085.1| GTP-binding protein [Bacteroides sp. 3_1_40A] Length = 293 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI++ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNLLVGERISIATFKSQTTRHRIMGILNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D + N D ++++ ++L++NKI Sbjct: 63 VKPNYKLQESMLNFSESALVDADILLYVTDVVEKTDKN-ADFIEKVRNVKVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E L++ E ++ + + +SAT D V+ + LP +P + DQ +D Sbjct: 122 DLTNQEDLVKLVEAWHEQLPQAEIIPISATSKFNVDTVMKRIKELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E SI I VIYVER SQK I++ Sbjct: 182 KPARFFVTEIIREKILLYYDKEIPYSVEVVVEQFKEDA-KSIHINAVIYVERESQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA+K + ++ ++L FVKV KDW Sbjct: 241 GKQGRALKKVATEARKTLEHFFQKSIYLETFVKVDKDW 278 >gi|78779761|ref|YP_397873.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9312] gi|78713260|gb|ABB50437.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9312] Length = 303 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 165/285 (57%), Gaps = 5/285 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG V L+G N GKSTL+N+ +G K++I + QTTR+ ++GI++ K QI+F+DTP Sbjct: 3 NYRSGFVTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTKNGQIIFVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ +++++ + S I D+V +VVDS E ++ + + I+ LN Sbjct: 63 GVHKPHHRLGEILVKNAKSAINGVDMVIVVVDSSEEPGRGDEYIMNFLVANQTEFIVALN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMV-SATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V E + + K I + F + SA++G GC +++N L + LP P +Y D Sbjct: 123 KWDLVNEEFRKLRLDQYRKFFGINRNFQILSASQGEGCSELVNMLLTFLPEGPKLYDEDM 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--KKDGSIL--IRQVIYVERP 253 I D P+ + +++ RE++ ++ +E+P+S V EK EE +K+G I I VER Sbjct: 183 ICDQPLDNLLSDLVREQVLINTREEVPHSVAVRIEKIEEMKRKNGKSFTAILATIIVERS 242 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +QK I++GK G +K I A+ +++++ PV+L LFVKV +W Sbjct: 243 TQKGILIGKKGSMLKIIGQSARSNMSKLINGPVYLELFVKVVPNW 287 >gi|282880853|ref|ZP_06289546.1| GTP-binding protein Era [Prevotella timonensis CRIS 5C-B1] gi|281305235|gb|EFA97302.1| GTP-binding protein Era [Prevotella timonensis CRIS 5C-B1] Length = 293 Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 161/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKSQTTRHRIMGIVNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D + NI D L+++ K + +IL++NKI Sbjct: 63 LQPNYKMQEYMLAFSESALADADILLYVTDVVETPEKNI-DFLEKVRKMTIPVILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + E + ++ + +SA+ G D +LN + LP +P + DQ++D Sbjct: 122 DQSNQKTLDQLVEKWHGILPNAEILPISASNKFGIDVLLNRIQELLPDSPPYFGKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L KEIPYS V + ++E + I I VIYVER SQK I++ Sbjct: 182 KPAKFFVSEIFREKILLFYDKEIPYSVEVKVDSFKETEQ-QIHIHAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + + + ++L FVKV K+W Sbjct: 241 GHQGMALKKVSTEARKALEKFFGKKIYLETFVKVDKNW 278 >gi|89100470|ref|ZP_01173332.1| Era [Bacillus sp. NRRL B-14911] gi|89084813|gb|EAR63952.1| Era [Bacillus sp. NRRL B-14911] Length = 309 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 164/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKST +NR +G K++I++ K QTTR+ V+G+++ ++Q +F+DTPGI Sbjct: 14 KSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNDAQFIFIDTPGI 73 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D++ +V++ ++++ + + L++NKI Sbjct: 74 HKPKHKLGDFMMKIAQNTLKEVDLILFMVNAEEGFGRGEEFIIEKFQNVKTPIFLVINKI 133 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P++L E + ++ +SA +G+ D +L + +P P Y ADQ++D Sbjct: 134 DQIHPDKLFSIIESYKEKYGFKEIIPISALEGNNVDTLLEQIKQYIPEGPQFYPADQVTD 193 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P +E+ REK +EIP+S VV +K E ++D ++ + + VER SQK I+ Sbjct: 194 HPERFIVSELIREKALHLTREEIPHSLAVVIDKMERREDKDVINVMATVIVERDSQKGIV 253 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+ +I +L V+L L+VKVQKDW Sbjct: 254 IGKQGAMLKEIGKRARTDIENLLGSKVYLELWVKVQKDW 292 >gi|148656306|ref|YP_001276511.1| GTP-binding protein Era [Roseiflexus sp. RS-1] gi|148568416|gb|ABQ90561.1| GTP-binding protein Era [Roseiflexus sp. RS-1] Length = 451 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 112/286 (39%), Positives = 163/286 (56%), Gaps = 4/286 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG N GKSTL+N +G KV+IV+ K QTTR+ +RGI+S ++QIVF+DTPGI Sbjct: 162 RSGFVALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILSRPDAQIVFVDTPGI 221 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ M++ + I AD+VC+VVD R + + K +R +L+LNKI Sbjct: 222 HEPRNRLGAYMVKQARRAIPDADVVCMVVDISRPPGSLDERIAALVRKAQARRMLVLNKI 281 Query: 141 DCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D P R E + L + VSA +G G D +++ + LP P +Y Q++ Sbjct: 282 DL--PTRSGNEHLQAYRALAPWDMEVAVSALRGQGLDALVDEIVRLLPEGPPLYPEGQVT 339 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AE+ RE++ H +E+P+S V E+WEEK+ + IR I VER SQK I+ Sbjct: 340 DQSERELAAELVREQVLRHTQQEVPHSVAVEVEEWEEKEKITY-IRMTILVERESQKAIL 398 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G G +K I A+ I ++L +PV+L L+VK + W DP Sbjct: 399 IGAGGSMLKKIGSGARLAIEDMLGRPVYLDLWVKARDHWRDDPNAL 444 >gi|154484522|ref|ZP_02026970.1| hypothetical protein EUBVEN_02236 [Eubacterium ventriosum ATCC 27560] gi|149734370|gb|EDM50287.1| hypothetical protein EUBVEN_02236 [Eubacterium ventriosum ATCC 27560] Length = 300 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 159/279 (56%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N+ +G K++I + K QTTR+ ++ + + E QIVFLDTPGI Sbjct: 6 KSGFVALIGRPNVGKSTLMNQIIGQKIAITSKKPQTTRNKIQTVYTCDEGQIVFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ ++ T+K D++ +V+ + + +++ +IL++NK Sbjct: 66 HKAKNKLGEYMVNVAEKTLKEVDLILWLVEPDTFIGAGEQHIAEQLKGIDVPVILVINKT 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VK E +L + K+ + SA +G D V+ + LP P Y D ++D Sbjct: 126 DTVKREEILTFIDAYRKIYDFNEIIPASALRGQNTDTVVEEIFKYLPEGPMYYDEDTVTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 PM AE+ REK L++E+P+ V E+ +++K+ I+ I I ER S K I+ Sbjct: 186 QPMRQIVAELIREKALHALNEEVPHGIAVTIERMKQRKNAEIMDIDATIVCERDSHKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+ EI + LE V+L L+VKV+KDW Sbjct: 246 IGKKGSMLKKIGTNARYEIEQQLEMKVNLQLWVKVRKDW 284 >gi|255535475|ref|YP_003095846.1| GTP-binding protein Era [Flavobacteriaceae bacterium 3519-10] gi|255341671|gb|ACU07784.1| GTP-binding protein Era [Flavobacteriaceae bacterium 3519-10] Length = 291 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 165/278 (59%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ +G K++IVT K QTTR + GI +E++ QIVF DTPG+ Sbjct: 3 KAGFVNIVGKPNVGKSTLLNQLMGEKLAIVTQKAQTTRHRIFGIYNEEDLQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + M+ +++ AD+ +VD + + L+ ++ K +++++NKI Sbjct: 63 LDPKYGLQERMMDFVKDSLQDADVFLFIVDILDKSE-PFEYLVDKLNKIPVPVLILVNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E L + E+ ++ + + +SA KG + +L L S LP P Y + +D Sbjct: 122 DESNQEDLEKVMELWHERIPKAEILPISALKGFNTEIILPKLKSLLPENPPYYDKEMYTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F E REK+ L+ KEIPYS VVTE ++E +G I I VIYVER +QK I++ Sbjct: 182 KPERFFVNEAIREKILLNYEKEIPYSVEVVTEMFKE-NEGIIFIDSVIYVERDTQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G+ IK + +EA+ ++ + + +HL LFVKV+KDW Sbjct: 241 GHKGEAIKKVGIEARIDLEKFFSKKIHLNLFVKVKKDW 278 >gi|308180766|ref|YP_003924894.1| GTP-binding protein Era [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046257|gb|ADN98800.1| GTP-binding protein Era [Lactobacillus plantarum subsp. plantarum ST-III] Length = 302 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 162/277 (58%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA++G N GKSTL+NR VG KV+I++ K QTTR+ ++GI + ++Q+VF+DTPGI Sbjct: 9 SGFVAIIGRPNVGKSTLLNRVVGQKVAIMSDKAQTTRNRIQGIYTTADTQMVFIDTPGIH 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 M++ + ST+ D V ++++ + ++ + + L++NKID Sbjct: 69 KPHSRLGDFMVKSALSTLGEVDAVLFMINADERRGAGDNFIIDRLKTVKQPIYLVINKID 128 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V P LLE + + ++ + +SA +G+ D++L L LP P Y +DQI+D Sbjct: 129 QVHPNHLLEIMDQYKDALPWKEVYPISALEGNNVDELLTTLKGQLPEGPQYYPSDQITDH 188 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P +E+ REK+ +E+P+S+ VV + + + + I ++ I +ER SQK I++G Sbjct: 189 PERFIISELIREKVLELTRQEVPHSTAVVIDSIKRQDEEKIHVQATIIIERSSQKGIIIG 248 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K G +K I A+++I +L V+L L+VKVQ++W Sbjct: 249 KGGSMLKKIGSLARRDIEHLLGDKVYLELWVKVQENW 285 >gi|255693538|ref|ZP_05417213.1| GTP-binding protein Era [Bacteroides finegoldii DSM 17565] gi|260620676|gb|EEX43547.1| GTP-binding protein Era [Bacteroides finegoldii DSM 17565] Length = 293 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + E QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDEMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D N ++ + ++ + + ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALTDADILLYVTDVVETPDKN-NEFMAKVRQMTVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L++ E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLTDQEKLVKLVEDWKELLPQAEIIPISAASKFNVDYVMKRIKELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS V E+++E+ I IR VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVAVEEFKEEAK-KIHIRAVIYVERESQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++E+ + + L +VKV KDW Sbjct: 241 GKQGKALKKVATEARRELERFFGKTIFLETYVKVDKDW 278 >gi|228476104|ref|ZP_04060812.1| GTP-binding protein Era [Staphylococcus hominis SK119] gi|314936312|ref|ZP_07843659.1| GTP-binding protein Era [Staphylococcus hominis subsp. hominis C80] gi|228269927|gb|EEK11407.1| GTP-binding protein Era [Staphylococcus hominis SK119] gi|313654931|gb|EFS18676.1| GTP-binding protein Era [Staphylococcus hominis subsp. hominis C80] Length = 299 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 164/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+++ +++QI+FLDTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFMNRVIGHKIAIMSDKAQTTRNKIQGVMTREDAQIIFLDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+R++ +T+ D + +V+ + ++ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPVFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + + +SA +G D ++ L LP P Y DQISD Sbjct: 125 DLVHPDALMPKIEKYKTYMDFTEIVPISALEGLNVDHFIDVLKDYLPEGPKYYPDDQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P EI REK+ +EIP++ V ++ ++ + + I I+VER SQK I++ Sbjct: 185 HPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMIKESEERVRIEATIFVERDSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + A+++I +L V+L L+VKVQKDW Sbjct: 245 GKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQKDW 282 >gi|327440936|dbj|BAK17301.1| GTPase [Solibacillus silvestris StLB046] Length = 304 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 176/288 (61%), Gaps = 6/288 (2%) Query: 16 VQDNS--RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 +Q+N +SG V++VG N GKST +NR +G K++I++ K QTTR+ V+G+++++ SQ + Sbjct: 1 MQENKGYKSGFVSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTQQNSQTI 60 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 F+DTPGI K + M++ S + ++ D++ +V++ + + +++ + + + Sbjct: 61 FIDTPGIHKPKHKLGEFMLKTSRNALREVDVIMFMVNAEQAIGKGDEFIIELLQGNKTPV 120 Query: 134 ILILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 LI+NKID V P+ L++ + +K F E +SA +G+ +++L+ + LP P Sbjct: 121 FLIINKIDLVHPDELVKIIDSYKDKFDFAE-IIPISALQGNNVENLLSTIEKYLPEGPQY 179 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYV 250 Y ADQ++D P +E+ REK+ +EIP+S VV E K E+K+ I ++ I V Sbjct: 180 YPADQVTDHPERFIISELIREKVLHLTREEIPHSIAVVIERIKPHEEKENMIHVQATIMV 239 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ER SQK I++GK G +K + A+++I +L V+L L+VKVQKDW Sbjct: 240 ERDSQKGIVIGKRGALLKEVGSRARQDIEMLLGSKVYLELWVKVQKDW 287 >gi|326803486|ref|YP_004321304.1| ribosome biogenesis GTPase Era [Aerococcus urinae ACS-120-V-Col10a] gi|326650900|gb|AEA01083.1| ribosome biogenesis GTPase Era [Aerococcus urinae ACS-120-V-Col10a] Length = 303 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 163/285 (57%), Gaps = 2/285 (0%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 F +N SG VA+VG N GKSTL+N +G KV+I++ K QTTR+ + I + E QIVF Sbjct: 2 FNPNNYHSGFVAIVGRPNVGKSTLLNHIIGQKVAIMSDKAQTTRNKIHAIYTTDEVQIVF 61 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DTPGI K + M++ ++S + +++ ++V+S ++ ++++IA ++ I Sbjct: 62 IDTPGIHKPKHELGEYMVKSAYSALDEVEVILMLVNSTEKIGPGDRFIMEKIAAYNTPKI 121 Query: 135 LILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L +NK D + E L E I NK +F ++ +SA G D +L L +PL P Y Sbjct: 122 LAVNKTDQLDKEDLAAYLESIPNKDIF-DQIIPLSALTGDNVDQLLKELTKEMPLGPQYY 180 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 DQ++D P + +E+ RE++ +EIP+S V +K ++ + + + I VER Sbjct: 181 PEDQVTDHPEYFVVSEMIREQILQLTREEIPHSVAVTVDKMQKDEYDKVHVYANIIVERK 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GKNG IK I A++EI +L L L+VKVQ W Sbjct: 241 SQKGIIIGKNGSMIKRIGSNARREIETMLGSKAFLELWVKVQPHW 285 >gi|315224466|ref|ZP_07866293.1| GTP-binding protein Era [Capnocytophaga ochracea F0287] gi|314945487|gb|EFS97509.1| GTP-binding protein Era [Capnocytophaga ochracea F0287] Length = 293 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 108/282 (38%), Positives = 160/282 (56%), Gaps = 4/282 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIVS + Q+VF DTPGI Sbjct: 3 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + M+ S + ADI+ +V+ +ELK K I + ++L++NK Sbjct: 63 IKPSYALQASMMDFVKSAFEDADILIYMVEIGEKELKD--EAFFKRINQLDVPVLLLINK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D L EQ + V + + +SA + + V N + LP +P + DQ++ Sbjct: 121 VDTSDQGVLEEQVAYWKEKVPRAEIYPISALRNFQTEVVFNRIIELLPESPAFFPKDQLT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F EI REK+ LH KEIPYS V TE + + + I IR VI VER SQK I+ Sbjct: 181 DKPERFFVNEIIREKILLHYKKEIPYSVEVETESFAD-SETIIHIRSVIMVERESQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G G+ +K + +EA+ ++ + + +HL LFVKV KDW ++ Sbjct: 240 IGHKGEALKRVGIEARADLEKFFGKQIHLELFVKVNKDWRNN 281 >gi|217967705|ref|YP_002353211.1| GTP-binding protein Era [Dictyoglomus turgidum DSM 6724] gi|217336804|gb|ACK42597.1| GTP-binding protein Era [Dictyoglomus turgidum DSM 6724] Length = 298 Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 168/288 (58%), Gaps = 2/288 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 ++ +++VG NAGKSTL+N VG KVSIV K QTTR + G+++ +++Q +FLDTPG Sbjct: 5 TKLAYISIVGKPNAGKSTLINLLVGEKVSIVADKPQTTRQRILGVLTLEDAQFIFLDTPG 64 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 F K + M + TI+ +DIV V+DS EL + LLK + + +++LNK Sbjct: 65 WFPPKHLLGEYMQKTIKKTIEDSDIVLYVIDSSVELDDDNRTLLKFVKDQGKPYLVLLNK 124 Query: 140 IDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V + + E + E+ V EK +SA G + ++ L P ++Y D + Sbjct: 125 IDMVSSKSIEERKKEVIALGVSEEKIIEISALYGTNKELLIEKLKEIAPEGEFLYPPDML 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D F AEI REK+ ++E+P+S V + EEKKDG++L IR I VERP+QK Sbjct: 185 TDQTDKFFIAEIIREKIIHLTYQEVPHSVAVYVDDIEEKKDGNLLYIRATIIVERPTQKA 244 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK+GQ +K I A+ EI ++ V+L L+VKV++ W P+ Sbjct: 245 IIIGKDGQMLKKIGTLARMEIESYYQKQVYLDLWVKVREKWRKKPEIL 292 >gi|124008575|ref|ZP_01693267.1| GTP-binding protein Era [Microscilla marina ATCC 23134] gi|123985949|gb|EAY25806.1| GTP-binding protein Era [Microscilla marina ATCC 23134] Length = 302 Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 102/281 (36%), Positives = 163/281 (58%), Gaps = 3/281 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 DN +G V+++G N GKSTL+N+ +G K+SI+T K QTTR + G+++ + QIV+ DT Sbjct: 12 DNHHAGFVSIIGKPNVGKSTLMNQVIGEKLSIITSKAQTTRHRIMGVINGDDFQIVYSDT 71 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI K HK M+R +++ AD++ V D + N D+++++ + +IL++ Sbjct: 72 PGIIKPKYELHKSMMRFVNTSLDDADVILFVTDIFEKHDEN--DVIEKLKISEAPVILLV 129 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID K ++ E+ +L+ + +SA D + + LP P + D Sbjct: 130 NKIDLAKDNQVEEKITYWKELIQPSEIIPISALNNINIDKLFESILKALPKHPPYFPKDT 189 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +D P F AE+ REK+F + +EIPY+ V+ +++EK++ I IR I VER SQK Sbjct: 190 FTDKPERFFAAEMIREKIFKNYKQEIPYACEVMITEFKEKEE-IINIRAEILVERQSQKG 248 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK GQ +K I +EA+K++ E + V L VKV DW Sbjct: 249 ILIGKGGQALKKIGIEARKDLEEFFAKQVFLAQHVKVSPDW 289 >gi|89895851|ref|YP_519338.1| hypothetical protein DSY3105 [Desulfitobacterium hafniense Y51] gi|89335299|dbj|BAE84894.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 303 Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 106/287 (36%), Positives = 164/287 (57%), Gaps = 6/287 (2%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 ++DF RSG V +VG NAGKSTL+N+ +G K+ I++ K QTTR+ + I++E+ Q Sbjct: 7 NRDF-----RSGFVTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQ 61 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 IVFLDTPGI K + M+ + +++ D++ +VD+ E +L+ + + Sbjct: 62 IVFLDTPGIHKPKHKLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKT 121 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 IL+LNKID ++ ++LL+ + + L +SA G D++L + +P P Sbjct: 122 PCILLLNKIDLIEKDKLLKLIKDYSALKDFLAILPISAKTGENKDELLKLIFKEMPQGPM 181 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 Y D+++D P AE+ REK+ E+P+S VV E EEKK I +R +I VE Sbjct: 182 YYPEDEVTDQPERFIMAELVREKVLQLTRDEVPHSIAVVVESVEEKKT-LIKVRALIVVE 240 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R SQK I++G G +K I A+++I +L V L LFVKV+KDW Sbjct: 241 RDSQKGIIIGHGGSLLKEIGRLARQDIETLLGSKVFLELFVKVEKDW 287 >gi|149183349|ref|ZP_01861787.1| Era [Bacillus sp. SG-1] gi|148848946|gb|EDL63158.1| Era [Bacillus sp. SG-1] Length = 297 Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 165/279 (59%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKST +NR +G K++I++ K QTTR+ V+G+ + ESQ++F+DTPGI Sbjct: 3 KSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVYTTNESQMIFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T++ DI+ ++++ +++++ + + L+LNKI Sbjct: 63 HKPKHKLGDFMMKIAQNTLREVDIILFMINAEEGYGRGDEFIIEKLKGVKTPVFLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+++L E N L +SA +G+ + +++ + LP P Y ADQI+D Sbjct: 123 DQLHPDKILPLIEQYNALHDFAAVVPISALEGNNVETLISEIRKELPEGPQYYPADQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P +E+ REK +EIP+S VV +K + D +++ + I VER SQK I+ Sbjct: 183 HPERFIVSELIREKALHLTREEIPHSLAVVIDKISTRGDKNVIDVMATIVVERDSQKGII 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+ +I +L V+L L+VKVQKDW Sbjct: 243 IGKQGGMLKEIGKRARVDIENLLGSKVYLELWVKVQKDW 281 >gi|229543819|ref|ZP_04432878.1| GTP-binding protein Era [Bacillus coagulans 36D1] gi|229324958|gb|EEN90634.1| GTP-binding protein Era [Bacillus coagulans 36D1] Length = 302 Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 164/283 (57%), Gaps = 1/283 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q +SG ++++G N GKST +N+ VG K++I++ K QTTR+ ++G+ + ++Q++F+D Sbjct: 3 QPTYKSGFISIIGRPNVGKSTFINQVVGQKIAIMSDKPQTTRNKIQGVYTADDAQMIFID 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGI K M++ + T+K D++ +V++ + +++ + + + L+ Sbjct: 63 TPGIHKPKHKLGDFMVKSATDTLKEVDLILFMVNAEEKRGRGDEYIIELLKHVRTPVFLV 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V P+ LL E L + +SA G+ +L+ + + LP P Y AD Sbjct: 123 INKIDLVHPDDLLAFIEQYKDLYPFREVVPISALGGNNVSRLLDTIKAYLPEGPQYYPAD 182 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQ 255 Q++D P +E+ REK +E+P+S VV EK E +++ ++ + I VERPSQ Sbjct: 183 QVTDHPERFIISELIREKALQLTREEVPHSIAVVIEKMEREENKDVIHVMATIVVERPSQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G+ G +K I A+ +I +L V+L L+VKVQKDW Sbjct: 243 KGIIIGRQGSMLKEIGKRARADIENLLGSQVYLELWVKVQKDW 285 >gi|261405616|ref|YP_003241857.1| GTP-binding protein Era [Paenibacillus sp. Y412MC10] gi|261282079|gb|ACX64050.1| GTP-binding protein Era [Paenibacillus sp. Y412MC10] Length = 300 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 161/278 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+N+ +G K++I++ K QTTR+ + G+ + +SQ+VFLDTPGI Sbjct: 7 KSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTPDSQVVFLDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M + + ST+ + +VD+ + + +++ K + +IL++NKI Sbjct: 67 HKRQSKLGDYMNQTALSTLGEVEAALFLVDASEGIGGGDRYIAEQLQKIKTPIILVMNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++P LL E KL + +SA G + +L + LP P Y DQ++D Sbjct: 127 DKIEPPALLPLIEQYRKLHDFAEIVPISAKLGSNVNTLLEQIQKYLPPGPQYYPEDQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +E+P+S V E +++G++ I VI+VER SQK I++ Sbjct: 187 HPEQFVCAELIREKILHMTREEVPHSIAVTIEDMRVEENGTVYISAVIFVERDSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + +A+++I +L + L L+VKV+KDW Sbjct: 247 GKQGALLKEVGRQARQDIQRLLGSKIFLELWVKVKKDW 284 >gi|255561072|ref|XP_002521548.1| GTP-binding protein era, putative [Ricinus communis] gi|223539226|gb|EEF40819.1| GTP-binding protein era, putative [Ricinus communis] Length = 443 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 10/298 (3%) Query: 11 EHKDFVQD-NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E D+ D N RSG VA+VG N GKSTL N+ +G K+SIVT K QTTR + GI S + Sbjct: 133 EELDYASDPNHRSGYVAVVGKPNVGKSTLSNQMIGQKLSIVTDKPQTTRHRILGICSGPD 192 Query: 70 SQIVFLDTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 Q+V DTPG+ + HKL M++ + +AD V ++VD+ + + I ++L+E Sbjct: 193 YQMVLYDTPGVIQKQ--MHKLDSMMMKNVRNAAINADCVLVIVDACK-VPEKIDEVLEEG 249 Query: 127 A---KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 K ++L+LNK D +KP + ++ E K +++ VSA GHG +D+ +++ Sbjct: 250 VGSLKDKPPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIKDWIL 309 Query: 184 STLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL 243 S LP P Y D +S+ P F AEI REK+F+ E+PY+ V ++ + Sbjct: 310 SKLPFGPAYYPKDIVSEHPERFFVAEIVREKIFMQFRNEVPYACQVNVVSYKSRPTAKDF 369 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I+ I VE+ SQK I++GK G+ +K ++ ++ +I + L++ V+L + VKV+ +W D Sbjct: 370 IQMEIVVEKNSQKIIIIGKEGRALKLLATASRLDIEDFLQKKVYLEIEVKVKDNWRQD 427 >gi|312135210|ref|YP_004002548.1| gtp-binding protein era [Caldicellulosiruptor owensensis OL] gi|311775261|gb|ADQ04748.1| GTP-binding protein Era [Caldicellulosiruptor owensensis OL] Length = 300 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 171/283 (60%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N VG K+SI++ K QTTR+ ++GI++ +++QI+F+DTPG+ Sbjct: 4 KSGFVALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNK 139 K+ + M+++S T+K D++ +V++ + +++++ + + IL+LNK Sbjct: 64 HPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIVEKLKEVETPKILVLNK 123 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D E + I + + E ++A G+ CD +LN + LP P Y D + Sbjct: 124 SDLASKENIEVLKSIFSAKLNFESIIDIAAINGYNCDLLLNEIKELLPEGPKYYLDDMTT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D+ AEI REK+ L+L +E+P+ + E++ E+++ IL I +IY E+ S K I Sbjct: 184 DVRESFIVAEIIREKILLNLSEEVPHGVGIAIERFAERENKDILDIEAIIYCEKDSHKAI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ++GK GQ +K I ++A++E+ I V+L L+VKV+K+W D Sbjct: 244 IIGKGGQMLKKIGMQAREELEMIFGMKVNLQLWVKVKKNWRDD 286 >gi|317475738|ref|ZP_07934997.1| GTP-binding protein Era [Bacteroides eggerthii 1_2_48FAA] gi|316908121|gb|EFV29816.1| GTP-binding protein Era [Bacteroides eggerthii 1_2_48FAA] Length = 293 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D E +D +++++ ++L++NKI Sbjct: 63 LKPTYKLQESMLNFSTSALTDADVLLYVTDV-VETPDKHNDFVEKVSHMEVPVLLLVNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L+E E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLSNQEKLVELVEAWKELLPNAEIIPISAATKFNVDYVMKRIKELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E ++ I I VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEQFKE-EEKKIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + + L FVKV KDW Sbjct: 241 GKQGKALKKVATEARRDLERFFGKTIFLETFVKVDKDW 278 >gi|295094022|emb|CBK83113.1| GTP-binding protein Era [Coprococcus sp. ART55/1] Length = 299 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 162/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKSTL+NR +G K++I ++K QTTR+ ++ + + + QI+FLDTPGI Sbjct: 6 KSGFVSIIGRPNVGKSTLMNRLIGQKIAITSNKAQTTRNRIQTVYTSDKGQIIFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M++++ ST+ D+V +V++ + +++++ + +I+++NKI Sbjct: 66 NRAKNKLGEYMLKVAESTLDEVDVVLWIVEATTFIGAGERYIIEQLQHVKTPIIVVVNKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V+ ++ E + VSA KG D++++ + LP P Y D I+D Sbjct: 126 DNVEESKVFEAINTYKDACDFAEIVPVSALKGKNTDELIDTIMKYLPYGPQYYDEDTITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ RE+ L KE+P+ VV + +E+ DG ++ I I ER S K I+ Sbjct: 186 QPERQIVAELIREQALRQLDKEVPHGIAVVIDSMKERPDGGLIDIDATIICERDSHKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+ I +L+ V+L L+VKV+KDW Sbjct: 246 IGKQGVMLKKIGTHARYGIERLLDTKVNLKLWVKVKKDW 284 >gi|225387778|ref|ZP_03757542.1| hypothetical protein CLOSTASPAR_01548 [Clostridium asparagiforme DSM 15981] gi|225046112|gb|EEG56358.1| hypothetical protein CLOSTASPAR_01548 [Clostridium asparagiforme DSM 15981] Length = 303 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + +++ QI+FLDTPGI Sbjct: 8 KSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ ++ T+ D++ +V+ + + +++ K + +IL++NKI Sbjct: 68 HKAKNKLGEYMVTVAERTLTEVDVILWLVEPSTFIGAGERHIAEQLNKVKTPVILVINKI 127 Query: 141 DCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D VK E +L + + + +SA K D + + LP P Y D ++ Sbjct: 128 DTVKKQEEILTFIDAYKDVCQFAEIVPLSALKDRNTDLLTELIFKYLPYGPQFYDEDTVT 187 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D PM AE+ REK L EIP+ VV E+ +E+K+G + I I ER S K I+ Sbjct: 188 DQPMRQIAAELIREKALRLLDDEIPHGIAVVIEQMKERKNGMMDIEASIVCERESHKGII 247 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I +EA+KEI +++E V+L L+VKV+K+W Sbjct: 248 IGKGGSMLKRIGIEARKEIEDMMETQVNLQLWVKVRKEW 286 >gi|308174317|ref|YP_003921022.1| GTP-binding protein [Bacillus amyloliquefaciens DSM 7] gi|307607181|emb|CBI43552.1| GTP-binding protein [Bacillus amyloliquefaciens DSM 7] Length = 301 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+++ SQ +F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D+V ++++ +++++ + S+ + LI+NKI Sbjct: 67 HKPKHKLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVFLIVNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P++LL + ++ +SA +G+ + +L + + LP P Y +DQ++D Sbjct: 127 DKIHPDQLLLLIDEYRTRYPFKEIVPISALEGNNVETLLAQIEAYLPEGPQFYPSDQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +E+P+S V E + +++GSI + I VER SQK I++ Sbjct: 187 HPERFIISELIREKVLHLTREEVPHSIAVAIESIKGQENGSIHVAATIVVERDSQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K I A+ +I +L V+L L+VKVQKDW Sbjct: 247 GKKGALLKEIGKRARADIEALLGSRVYLELWVKVQKDW 284 >gi|237708021|ref|ZP_04538502.1| GTP-binding protein Era [Bacteroides sp. 9_1_42FAA] gi|237725293|ref|ZP_04555774.1| GTP-binding protein Era [Bacteroides sp. D4] gi|265754192|ref|ZP_06089381.1| GTP-binding protein Era [Bacteroides sp. 3_1_33FAA] gi|229436559|gb|EEO46636.1| GTP-binding protein Era [Bacteroides dorei 5_1_36/D4] gi|229458007|gb|EEO63728.1| GTP-binding protein Era [Bacteroides sp. 9_1_42FAA] gi|263234901|gb|EEZ20456.1| GTP-binding protein Era [Bacteroides sp. 3_1_33FAA] Length = 293 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI++ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNLLVGERISIATFKSQTTRHRIMGILNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D + N D ++++ ++L++NKI Sbjct: 63 VKPNYKLQESMLNFSESALVDADILLYVTDVVEKTDKN-ADFIEKVRNVKVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E L++ E ++ + + +SAT D V+ + LP +P + DQ +D Sbjct: 122 DLTNQEDLVKLVEAWHEQLPQAEIIPISATSKFNVDTVMKRIRELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E ++E SI I VIYVER SQK I++ Sbjct: 182 KPARFFVTEIIREKILLYYDKEIPYSVEVVVEHFKEDA-KSIHINAVIYVERESQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA+K + ++ ++L FVKV KDW Sbjct: 241 GKQGRALKKVATEARKTLEHFFQKSIYLETFVKVDKDW 278 >gi|218128436|ref|ZP_03457240.1| hypothetical protein BACEGG_00004 [Bacteroides eggerthii DSM 20697] gi|329957357|ref|ZP_08297877.1| ribosome biogenesis GTPase Era [Bacteroides clarus YIT 12056] gi|217989327|gb|EEC55640.1| hypothetical protein BACEGG_00004 [Bacteroides eggerthii DSM 20697] gi|328523070|gb|EGF50173.1| ribosome biogenesis GTPase Era [Bacteroides clarus YIT 12056] Length = 293 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D E +D +++++ ++L++NKI Sbjct: 63 LKPTYKLQESMLNFSTSALTDADVLLYVTDV-VETPDKHNDFVEKVSHMEVPVLLLVNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L+E E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLSNQEKLVELVEAWKELLPNAEIIPISAATKFNVDYVMKRIKELLPDSPPYFDKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E ++ I I VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEQFKE-EEKKIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + + L FVKV KDW Sbjct: 241 GKQGKALKKVATEARRDLERFFGKTIFLETFVKVDKDW 278 >gi|332879047|ref|ZP_08446756.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682996|gb|EGJ55884.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 294 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI++ ++ QI F DTPG+ Sbjct: 4 KAGFVNIVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTEDMQICFSDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S ++ AD++ V D N D L++++K ++L++NKI Sbjct: 64 LKPNYKLQESMLNFSESALQDADVLLYVTDMVETPDKN-GDFLEKVSKMDVPVLLLINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + E + ++ + +SA D VLN + LP +P + DQ +D Sbjct: 123 DVSNQQELTSKVEAWHAVLPKAEIIPISALCKFNIDTVLNRIKELLPDSPPYFGKDQWTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E+ SI I VIYVER SQK I++ Sbjct: 183 KPARFFVTEIIREKILLYYDKEIPYSVEVVVEQFKEEAK-SIHINVVIYVERDSQKGIII 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + + + ++L FVKV KDW Sbjct: 242 GHRGVALKKVSTEARKSLEKFFGKSIYLETFVKVDKDW 279 >gi|145220317|ref|YP_001131026.1| GTP-binding protein Era [Prosthecochloris vibrioformis DSM 265] gi|145206481|gb|ABP37524.1| GTP-binding protein Era [Chlorobium phaeovibrioides DSM 265] Length = 308 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 106/285 (37%), Positives = 165/285 (57%), Gaps = 9/285 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +++G NAGKSTL+N + K+SIVTHK QTTR + GI S+ +QI+FLDTPGI Sbjct: 12 GFTSIIGPPNAGKSTLLNALLDCKLSIVTHKPQTTRKKITGIYSDDSTQIIFLDTPGIME 71 Query: 83 AKDSYHKLMIRLSWSTIKHAD-IVCLVVDSHRELKVN---IHDLLKEIAKRSSR-LILIL 137 + H+ M++++ T+K AD I+ L+ S + + +L ++ K S + LI + Sbjct: 72 PQQKLHEAMLKVTRDTLKDADAIIALLPFSKKNGPFDRAFAEELHRDWLKNSGKPLIAVF 131 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D V E+ E + +SA G G ++++ L LP+ +Y D Sbjct: 132 NKSDLVNAEQQKEAEAFIRREWNPAAILSISALNGKGLQELVDALRPYLPMHDPLYPEDA 191 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LIRQVIYVERP 253 +S P F +EI REK+FL +E+PYS+ VV +++ E+ + LIR I VER Sbjct: 192 LSTAPERFFASEIIREKIFLLYGREVPYSAEVVVDEFREQHENDPKRKDLIRCSIIVERD 251 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +QK+I++G GQ +K + A++EI ++L +P+ L LFVKV+ DW Sbjct: 252 TQKQIIIGHKGQALKKLGQSARQEIEQLLGRPIFLELFVKVRPDW 296 >gi|219670281|ref|YP_002460716.1| GTP-binding protein Era [Desulfitobacterium hafniense DCB-2] gi|219540541|gb|ACL22280.1| GTP-binding protein Era [Desulfitobacterium hafniense DCB-2] Length = 303 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 105/287 (36%), Positives = 164/287 (57%), Gaps = 6/287 (2%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 ++DF RSG V +VG NAGKSTL+N+ +G K+ I++ K QTTR+ + I++E+ Q Sbjct: 7 NRDF-----RSGFVTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQ 61 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +VFLDTPGI K + M+ + +++ D++ +VD+ E +L+ + + Sbjct: 62 VVFLDTPGIHKPKHKLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKT 121 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 IL+LNKID ++ ++LL+ + + L +SA G D++L + +P P Sbjct: 122 PCILLLNKIDLIEKDKLLKLIKDYSALKDFLAILPISAKTGENKDELLKLIFKEMPQGPM 181 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 Y D+++D P AE+ REK+ E+P+S VV E EEKK I +R +I VE Sbjct: 182 YYPEDEVTDQPERFIMAELVREKVLQLTRDEVPHSIAVVVESVEEKKT-LIKVRALIVVE 240 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R SQK I++G G +K I A+++I +L V L LFVKV+KDW Sbjct: 241 RDSQKGIIIGHGGSLLKEIGRLARQDIETLLGSKVFLELFVKVEKDW 287 >gi|227534995|ref|ZP_03965044.1| GTP-binding protein era family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187386|gb|EEI67453.1| GTP-binding protein era family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 278 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 91/260 (35%), Positives = 153/260 (58%) Query: 39 VNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 +NR +G K++I++ K QTTR+ + GI + ++QIVF+DTPGI K+ M + + ST Sbjct: 1 MNRILGEKIAIMSPKAQTTRNKINGIYTTPDAQIVFVDTPGIHKPKNELDTYMDKAALST 60 Query: 99 IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKL 158 + D + +V++ E +++++A+ + LI+NKID VKP+ LL E Sbjct: 61 LNQVDAILFMVEADEEKGPGDGYIMRQLAEVKKPVYLIINKIDLVKPDDLLPLIESYQHD 120 Query: 159 VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLH 218 + F +SAT G+ D++L L LP+ P Y DQ++D P + E+ REK+ Sbjct: 121 YAFAQVFPISATMGNNVDELLTALTDALPVGPQYYPEDQLTDHPEYFVVGELIREKILEL 180 Query: 219 LHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEI 278 E+P++ V E+ ++++ G + I I VER SQK I++G+ GQ +K I + A+++I Sbjct: 181 TRDEVPHAVAVQVERMKDREGGKLQIEAYIIVERDSQKGIIIGRGGQMLKQIGIRARRDI 240 Query: 279 AEILEQPVHLILFVKVQKDW 298 +L V+L L+V+VQK+W Sbjct: 241 ENLLGDKVNLKLWVRVQKNW 260 >gi|212638693|ref|YP_002315213.1| GTPase [Anoxybacillus flavithermus WK1] gi|212560173|gb|ACJ33228.1| GTPase [Anoxybacillus flavithermus WK1] Length = 306 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 164/285 (57%), Gaps = 1/285 (0%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 VQ+ +SG VA++G N GKST +NR +G K++I++ K QTTR+ ++G+ + ++QI+F Sbjct: 5 MVQEGYKSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIF 64 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DTPGI K M++++ S ++ D++ +V++ +++ + + + + Sbjct: 65 IDTPGIHKPKHKLGDFMVKVAQSALQEVDLILFMVNAVEGFGRGDEFIIERLKQVQTPVF 124 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 L++NKID V P+ LL E L + +SA +G+ + +L + + LP P Y Sbjct: 125 LVINKIDEVHPDDLLPLIEQYRSLHSFAEVIPISALQGNNVETLLQQIKNYLPEGPQYYP 184 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG-SILIRQVIYVERP 253 A Q++D P AE REK +E+P+S VV + E +++ ++ + I VER Sbjct: 185 AHQVTDHPERFIIAEFIREKALHLTREEVPHSIAVVIDSIERRENSDTVYVAATIIVERD 244 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GK GQ +K I A+ +I +L V L L+VKVQKDW Sbjct: 245 SQKGIIIGKRGQMLKEIGQRARADIEALLGSKVFLELWVKVQKDW 289 >gi|317128319|ref|YP_004094601.1| GTP-binding protein Era [Bacillus cellulosilyticus DSM 2522] gi|315473267|gb|ADU29870.1| GTP-binding protein Era [Bacillus cellulosilyticus DSM 2522] Length = 298 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 169/289 (58%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +SG VAL+G N GKSTL+N +G K++I++ K QTTR+ ++G+ +E Q++F+DTP Sbjct: 2 QKKSGFVALIGRPNVGKSTLLNEVLGQKIAIMSDKAQTTRNRIQGVYTEDRGQVIFIDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI K M++++ +T+K D + +VD+ +++++ ++ + LI+N Sbjct: 62 GIHKPKHRLGDFMMKIAQTTLKEVDAILFLVDAKEGRGKGDEFIMEKLKHVTTPIFLIVN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V P+ L + K + +SA G+ + +L+ + L P YS D + Sbjct: 122 KIDEVHPDELFLLIDDYRKRFEFTEVIPISALYGNNVETLLDQVFKYLDEGPQYYSEDIV 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P AE+ REK+ H+E+P+S V E+ + +++ ++ + VI VER SQK I Sbjct: 182 TDHPERFLMAEMIREKVLHLTHEEVPHSIAVEIEQIKRRENETVYVGAVIVVERSSQKGI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 ++GK G+ +K I +A+++I ++L V L L+V+++KDW + PK + Sbjct: 242 VIGKQGKLLKEIGQKAREDIQKLLGSKVFLELWVRIEKDWRNKPKYLKE 290 >gi|288930106|ref|ZP_06423944.1| GTP-binding protein Era [Prevotella sp. oral taxon 317 str. F0108] gi|288328579|gb|EFC67172.1| GTP-binding protein Era [Prevotella sp. oral taxon 317 str. F0108] Length = 293 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ E QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTPEMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D + + N D L+++ ++L++NKI Sbjct: 63 LKPNYKLQESMLAFSVSALSDADVLLYVTDVVEDPEKN-ADFLEKVRGMKIPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + E + L+ + +SA G D +L + LP +P + DQ++D Sbjct: 122 DESDQKTLGDIVERWHALLPKAEILPISAKNKFGTDLLLRRIQELLPESPPYFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS V E+++E + I I VIYVER SQK I++ Sbjct: 182 KPARFFVSEIIREKILLYYDKEIPYSVEVKVERFKE-TEKKIHINAVIYVERESQKGIVI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + ++ V+L FVKV KDW Sbjct: 241 GHQGVALKKVSSEARKTLERFFDKEVYLETFVKVDKDW 278 >gi|94266754|ref|ZP_01290422.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|94270658|ref|ZP_01291794.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|93450717|gb|EAT01793.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|93452576|gb|EAT03153.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] Length = 299 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 108/280 (38%), Positives = 160/280 (57%), Gaps = 8/280 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VAL+GA NAGKSTL+NR +G K++IVT K QTTR+ + G+V+ ++ Q+V LDTPG+ Sbjct: 12 GFVALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILGVVNHRDYQMVLLDTPGLHR 71 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILN 138 AK+ + M+RL+ + D+V +VD + E + + LL+E K + +L+ N Sbjct: 72 AKNRLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHAQKLLREAGKPA---LLLGN 128 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + E+LL ++ + +SA G GC L LP P ++ D Sbjct: 129 KIDRIGKEKLLPLIAAWQEVYPFQAIIPLSALTGEGCQLFLTEASRLLPTGPRLFPEDIP 188 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D EI REK+ L E+PYS VV +++ EK G I+ I VE+ SQK I Sbjct: 189 TDASERFICGEIIREKIMLLTRDELPYSVAVVIDQFMEKP-GMTTIQATIMVEKDSQKGI 247 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G ++ I A++EI +L Q V L L+VKVQK+W Sbjct: 248 VIGKKGVMLQQIGERARREIETMLGQKVLLKLWVKVQKNW 287 >gi|297588412|ref|ZP_06947055.1| GTP-binding protein Era [Finegoldia magna ATCC 53516] gi|297573785|gb|EFH92506.1| GTP-binding protein Era [Finegoldia magna ATCC 53516] Length = 294 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 171/279 (61%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G +N GKSTL+NR +G K++I++ K QTTR+ ++ I +++ Q +FLDTPGI Sbjct: 3 KSGFISVIGRSNVGKSTLLNRVLGEKLTIISDKPQTTRNKIQLIYTDENMQAIFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ M+++S ST+ D++ +VD+ E+ ++++++ +++IL++NKI Sbjct: 63 QTPKNKLGDYMLKVSMSTLNEVDVITYIVDTTEEIGKLDTEIIEKLKLVDTKIILLINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +++ E E+ +K+ E+ +SA G + L L + LP P Y D ++D Sbjct: 123 DKTSSDKVNELVEMYSKVGIFEEIIPISALNGDNVEGYLTSLKNNLPEGPMYYDEDSVTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P+ E+ REK ++L E+P+ + EK++E++ +++ I I VE+ S K ++ Sbjct: 183 QPIRQIVQELIREKALMNLSDELPHGIAITIEKFKERQGRNLIDIDATIIVEKKSHKGMV 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G IK I +A+ +I ++L+ V+L L+VK+ ++W Sbjct: 243 IGKKGSMIKKIGTDARVDIEQLLDAKVNLKLWVKIDEEW 281 >gi|160890562|ref|ZP_02071565.1| hypothetical protein BACUNI_03005 [Bacteroides uniformis ATCC 8492] gi|270295702|ref|ZP_06201902.1| GTP-binding protein Era [Bacteroides sp. D20] gi|317479894|ref|ZP_07939010.1| GTP-binding protein Era [Bacteroides sp. 4_1_36] gi|156859561|gb|EDO52992.1| hypothetical protein BACUNI_03005 [Bacteroides uniformis ATCC 8492] gi|270273106|gb|EFA18968.1| GTP-binding protein Era [Bacteroides sp. D20] gi|316903941|gb|EFV25779.1| GTP-binding protein Era [Bacteroides sp. 4_1_36] Length = 293 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D E +D ++++ ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALTDADVLLYVTDV-VETPDKHNDFVEKVGHLDVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L+E E +L+ + +SAT D V+ + LP +P + DQ +D Sbjct: 122 DLSNQEKLVELVEAWKELLPKAEIIPISATSKFNVDYVMKRVKELLPDSPPYFDKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS V+ E+++E+ I I VIYVER SQK I++ Sbjct: 182 KPARFFVTEIIREKILLYYDKEIPYSVEVMVEQFKEEA-KKIHISAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + + L FVKV KDW Sbjct: 241 GKQGKALKKVATEARRDLERFFGKTIFLETFVKVDKDW 278 >gi|313672925|ref|YP_004051036.1| gtp-binding protein era [Calditerrivibrio nitroreducens DSM 19672] gi|312939681|gb|ADR18873.1| GTP-binding protein Era [Calditerrivibrio nitroreducens DSM 19672] Length = 294 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 161/279 (57%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G NAGKSTL+N +G KVSI++ K TTR+ +RGI + K++QI+F+DTPGI Sbjct: 4 KTGFVGIIGRPNAGKSTLLNAILGEKVSIISSKPNTTRTQIRGIYNSKDAQIIFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NAKD+ +KLM+ ++ TIK DIV +V+ + +L+ I + LI+ KI Sbjct: 64 HNAKDNINKLMVEKAFETIKMVDIVYFLVEPGEKKGPEYKQILELIKNEPIKKFLIITKI 123 Query: 141 DCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + + + + A ++ N F ++ +S+ K D ++ LP +Y D+I Sbjct: 124 DAFEKKIIYDTAKQVFNDYQF-DQVIPISSIKKINIDKLIEITKELLPEGDPIYPQDEIV 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+ AE RE++F L E+PY + V E E+K + + + IY +R SQK I+ Sbjct: 183 DISEKFLIAEFIREQIFEILQDEVPYDTFVECELIEDKSENLMYVSAAIYTKRESQKAII 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 LGK G IK I +A+ E+ + + L LFVKV++DW Sbjct: 243 LGKRGSTIKKIGQKARIELEKFFGVKIFLDLFVKVKEDW 281 >gi|224535782|ref|ZP_03676321.1| hypothetical protein BACCELL_00646 [Bacteroides cellulosilyticus DSM 14838] gi|224522602|gb|EEF91707.1| hypothetical protein BACCELL_00646 [Bacteroides cellulosilyticus DSM 14838] Length = 293 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M+ S S + AD++ V D E ++ ++++A+ ++L++NKI Sbjct: 63 LKPQYKLQESMLNFSTSALTDADVLLYVTDV-VETPDKHNEFIEKVARMEIPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L+E E L+ + +SAT + V+ + LP +P + DQ +D Sbjct: 122 DLSNQEKLVELVEAWKALLPNAEIIPISATTKFNVEYVMKRVKELLPDSPPYFDKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E I I VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEQFKEDA-KKIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + + L FVKV KDW Sbjct: 241 GKQGKALKKVATEARRDLERFFGKTIFLETFVKVDKDW 278 >gi|330997749|ref|ZP_08321588.1| ribosome biogenesis GTPase Era [Paraprevotella xylaniphila YIT 11841] gi|329569848|gb|EGG51606.1| ribosome biogenesis GTPase Era [Paraprevotella xylaniphila YIT 11841] Length = 294 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI++ ++ QI F DTPG+ Sbjct: 4 KAGFVNIVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTEDMQICFSDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S ++ AD++ V D N D L++++K +++++NKI Sbjct: 64 LKPNYKLQESMLNFSESALQDADVLLYVTDMVETPDKN-GDFLEKVSKMDVPVLVLINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + E + ++ + +SA D VLN + LP +P + DQ +D Sbjct: 123 DVSNQQELTSKVEAWHAVLPKAEIIPISALCKFNIDTVLNRIKDLLPDSPPYFGKDQWTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E SI I VIYVER SQK I++ Sbjct: 183 KPARFFVTEIIREKILLYYDKEIPYSVEVVVERFKEAAK-SIHINAVIYVERESQKGIII 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + + + ++L FVKV KDW Sbjct: 242 GHRGVALKKVSTEARKSLEKFFGKSIYLETFVKVDKDW 279 >gi|260881589|ref|ZP_05404771.2| GTP-binding protein Era [Mitsuokella multacida DSM 20544] gi|260848446|gb|EEX68453.1| GTP-binding protein Era [Mitsuokella multacida DSM 20544] Length = 323 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 164/283 (57%), Gaps = 2/283 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q +SG +A++G N GKSTL+N +G K++I++ K QTT++ + I++E ++QIVFLD Sbjct: 26 QAKHKSGFIAVIGRPNVGKSTLINTLIGQKIAIMSDKPQTTQNRILCILTEPDAQIVFLD 85 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGI K + M++ + T+K D + VVD+ ++ + +L+ + S +IL+ Sbjct: 86 TPGIHKPKHKLGEYMVKAAEGTLKEVDAILFVVDATEKMGPGEYYILERLQATSKPVILV 145 Query: 137 LNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D ++ E++L + A+K F+ +SA D +L + LP P Y Sbjct: 146 VNKLDLIEKEQVLPIISRYADKYPFV-GVVPISAKAETNLDSLLTEVKKYLPEGPQYYPE 204 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P AE+ REK+ E+P++ V T++ + +G + IR IYVER SQ Sbjct: 205 DMVTDQPERLIVAELIREKVLQLTRDEVPHAVAVETDEMTTRPNGDVYIRATIYVERDSQ 264 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G G +K I A+K+I +L V L L+VKV+KDW Sbjct: 265 KGIIIGAKGAMLKEIGALARKDIEALLGSRVFLDLWVKVKKDW 307 >gi|325290526|ref|YP_004266707.1| GTP-binding protein Era-like-protein [Syntrophobotulus glycolicus DSM 8271] gi|324965927|gb|ADY56706.1| GTP-binding protein Era-like-protein [Syntrophobotulus glycolicus DSM 8271] Length = 305 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/287 (38%), Positives = 163/287 (56%), Gaps = 8/287 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 KDF RSG VA+VG NAGKSTL+N VG KV I++ K QTTR+ ++ I++E+ QI Sbjct: 9 KDF-----RSGFVAVVGRPNAGKSTLLNTLVGQKVLIISEKPQTTRNRIQCILTEERGQI 63 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 VF+DTPGI K + M+ + +++ D++ VVD+ +L + + Sbjct: 64 VFIDTPGIHKPKHQLGQYMVNTAKGSLRGTDLIIYVVDASVPFGTGDEYVLNMVKESGIP 123 Query: 133 LILILNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 IL LNKID + E +L + E + + F E +SA +G + + + L P Sbjct: 124 SILALNKIDLLSKEEILSKIIEFSQQADFKE-VVPISALQGENTKKLTDLIFPNLLPGPM 182 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 Y D I D P AE+ REKL +E+P+S+ V+ EK EE+K + I VI VE Sbjct: 183 YYPEDHIIDQPERFVVAELIREKLLKLTREEVPHSAAVIVEKMEEQK-ALLKISAVILVE 241 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R SQK I++GKNG +K + +A++EI +L+ V L L+VKV+KDW Sbjct: 242 RESQKGIVIGKNGAMLKEVGRQAREEIEALLDNKVFLELWVKVRKDW 288 >gi|328554264|gb|AEB24756.1| GTPase Era [Bacillus amyloliquefaciens TA208] gi|328912661|gb|AEB64257.1| GTP-binding protein [Bacillus amyloliquefaciens LL3] Length = 301 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+++ SQ +F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D+V ++++ +++++ + S+ + LI+NKI Sbjct: 67 HKPKHKLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVFLIVNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P++LL + ++ +SA +G+ + +L + + LP P Y +DQ++D Sbjct: 127 DKIHPDQLLLLIDEYRTRYPFKEIVPISALEGNNVETLLAQIEAYLPEGPQFYPSDQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +E+P+S V E + +++GSI + I VER SQK I++ Sbjct: 187 HPERFIISELIREKVLHLTREEVPHSIAVAIESIKGQENGSIHVAATIVVERDSQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + A+ +I +L V+L L+VKVQKDW Sbjct: 247 GKKGALLKEVGKRARADIEALLGSRVYLELWVKVQKDW 284 >gi|329962636|ref|ZP_08300584.1| ribosome biogenesis GTPase Era [Bacteroides fluxus YIT 12057] gi|328529667|gb|EGF56565.1| ribosome biogenesis GTPase Era [Bacteroides fluxus YIT 12057] Length = 305 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 15 KAGFVNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 74 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D E +D ++++A+ ++L++NKI Sbjct: 75 LKPNYKLQESMLNFSTSALADADVLLYVTDV-VETPDKHNDFVEKVARMEVPVLLLVNKI 133 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L+E E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 134 DLSNQEKLVELVEAWKELLPKAEIIPISAATKFNVDYVMKRVKELLPDSPPYFDKDQWTD 193 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS V E+++E+ I + VIYVER SQK I++ Sbjct: 194 KPARFFVTEIIREKILLYYDKEIPYSVEVSVEQFKEEA-KKIHVSAVIYVERDSQKGIII 252 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + + + L FVKV KDW Sbjct: 253 GKQGKALKKVATEARRDLEKFFGKTIFLETFVKVDKDW 290 >gi|189463676|ref|ZP_03012461.1| hypothetical protein BACINT_00007 [Bacteroides intestinalis DSM 17393] gi|189438626|gb|EDV07611.1| hypothetical protein BACINT_00007 [Bacteroides intestinalis DSM 17393] Length = 293 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M+ S S + AD++ V D E ++ ++++A ++L++NKI Sbjct: 63 LKPQYKLQESMLNFSTSALTDADVLLYVTDV-VETPDKHNEFVEKVAHMEIPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L+E E L+ + +SAT D V+ + LP +P + DQ +D Sbjct: 122 DLSNQEKLVELVEAWKALLPNAEIIPISATTKFNVDYVMKRVKELLPDSPPYFDKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E I I VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEQFKEDA-KKIHISAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + + L FVKV KDW Sbjct: 241 GKQGKALKKVATEARRDLERFFGKTIFLETFVKVDKDW 278 >gi|288555745|ref|YP_003427680.1| Era/ThdF family GTP-binding protein [Bacillus pseudofirmus OF4] gi|288546905|gb|ADC50788.1| Era/ThdF family GTP-binding protein [Bacillus pseudofirmus OF4] Length = 303 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 159/278 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKSTL+N +G K++I++ K QTTR+ ++G+ + ESQ+VF+DTPGI Sbjct: 9 KSGFVSIIGRPNVGKSTLLNYVIGQKIAIMSDKPQTTRNKIQGVYTSNESQVVFIDTPGI 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T++ D++ VVD+ +++ + + + + L++NKI Sbjct: 69 HKPKHKLGDFMMKVAQNTLREVDLILYVVDAGEAFGSGEEFIIERLKETKTPVFLVINKI 128 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V+P+ LL E + VSA +G ++ + L P Y +DQ++D Sbjct: 129 DKVQPDDLLGIIETYRTKFDFTEVIPVSALQGSNVPTLMEQIVDHLEEGPQYYPSDQVTD 188 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ +EIP+S VV E+ + + + I I I VER SQK I++ Sbjct: 189 HPERFIVAELIREKVLHLTREEIPHSVAVVIEQMKRRDNDMIYIGATIIVERTSQKGIII 248 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G ++ + A+ +I +L V L L+VKVQKDW Sbjct: 249 GKQGSMLREVGKRARGDIEALLGSKVFLELWVKVQKDW 286 >gi|225548173|ref|ZP_03769458.1| hypothetical protein RUMHYD_00152 [Blautia hydrogenotrophica DSM 10507] gi|225040612|gb|EEG50858.1| hypothetical protein RUMHYD_00152 [Blautia hydrogenotrophica DSM 10507] Length = 301 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 166/284 (58%), Gaps = 1/284 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + +N +SG VAL+G N GKSTL+N +G K++I + K QTTR+ ++ + + E Q+VFL Sbjct: 1 MNENYKSGFVALIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTSPEGQVVFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M++++ T+K D++ +V+ + + +++ + +IL Sbjct: 61 DTPGIHKAKNKLGEYMVQVAERTLKEVDVILWLVEPTTFVGAGERRIAQQLQELHLPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 I+NK+D V+ +L+ ++ +L ++ +SA + D++N + LP P Y Sbjct: 121 IINKVDTVEKGEILQAIDVYRRLYEFDEIIPISALRNRNTGDIMNCIFKYLPYGPQYYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 D ++D P+ AEI REK L EIP+ V ++ +++ G+++ I I E+ S Sbjct: 181 DTVTDQPVRQIAAEIIREKSLHALDAEIPHGIAVAIDRMKDRGSGNLIDIDATIICEKDS 240 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ E+ ++L+ V+L L+VKV++DW Sbjct: 241 HKGIIIGKQGAMLKKIGSNARYELEKMLDSKVNLKLWVKVKRDW 284 >gi|170287887|ref|YP_001738125.1| GTP-binding protein Era [Thermotoga sp. RQ2] gi|170175390|gb|ACB08442.1| GTP-binding protein Era [Thermotoga sp. RQ2] Length = 301 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 162/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL G N GKST +N +G KV IV+ K QTTR+ + I ++K+SQI+F+DTPGI Sbjct: 5 KSGFVALAGKPNVGKSTFINVVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ + +K D++ ++D+ + + + + ++ I+ +NKI Sbjct: 65 HKPLHRLGEYMVKAAVQALKGVDLILFMLDAADGFTKTDEHVAEIVNESGTKTIIAVNKI 124 Query: 141 DCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D E+ ++A +V + +SA KG G +VL + LP P Y D ++ Sbjct: 125 DVAGEEKAKAVGQLAKSMVENVVSVHYISALKGEGVFEVLEKIKEELPEGPQYYPEDMVT 184 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ AEI REK+F +E+P+S+ VV E+ +++ +G + IR IYVER SQK I+ Sbjct: 185 DRPLSFMAAEIIREKIFHLTRQEVPHSTAVVIEEIKDRPNGVLYIRANIYVERDSQKGIL 244 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNG IK I A++E+ ++ + V+L L VKV++ W Sbjct: 245 IGKNGSMIKKIGTLAREELEFLVGRKVYLDLNVKVKEKW 283 >gi|157693029|ref|YP_001487491.1| GTP-binding protein Era [Bacillus pumilus SAFR-032] gi|157681787|gb|ABV62931.1| GTPase [Bacillus pumilus SAFR-032] Length = 301 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 163/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+++ SQ +F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNSSQTIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D++ ++++ +++ + + S+ + L++NKI Sbjct: 67 HKPKHKLGDFMMKVAQNTLKEVDLILFMINAKEGYGKGDEFIIERLKQTSTPVFLVVNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ L + ++ +SA +G+ D +L + LP P Y ADQ++D Sbjct: 127 DQIHPDELFLLIDEYRTRYPFKEIVPISALEGNNIDTLLQQVEGYLPEGPQFYPADQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +EIP+S V E + ++G I + I VER SQK I++ Sbjct: 187 HPERFIISELIREKVLHLTREEIPHSIAVAIESIKPDENGKIHVAATIVVERDSQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + +A+++I +L V+L L+VKVQKDW Sbjct: 247 GKRGSLLKEVGQKARRDIEALLGSKVYLELWVKVQKDW 284 >gi|189462215|ref|ZP_03011000.1| hypothetical protein BACCOP_02898 [Bacteroides coprocola DSM 17136] gi|189431068|gb|EDV00053.1| hypothetical protein BACCOP_02898 [Bacteroides coprocola DSM 17136] Length = 293 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 161/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI++ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D+ + N D ++++ + ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSESALVDADVLLYVTDTIEKPDKN-ADFMEKVRRVKVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E L++ E ++++ + +SA D V+ + +P +P + DQ++D Sbjct: 122 DLTNQEELVKLVEEWHEMLPEAEIIPISAKAKFNVDVVMKRIKELIPDSPPYFGKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPY+ VV E+++E SI I VIYVER SQK I++ Sbjct: 182 KPARFFVTEIIREKILLYYDKEIPYAVEVVVEQFKEDA-KSIHINAVIYVERESQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G+ +K ++ EA+K + ++ ++L FVKV KDW Sbjct: 241 GHQGKALKKVATEARKTLEHFFQKSIYLETFVKVDKDW 278 >gi|297617800|ref|YP_003702959.1| GTP-binding protein Era [Syntrophothermus lipocalidus DSM 12680] gi|297145637|gb|ADI02394.1| GTP-binding protein Era [Syntrophothermus lipocalidus DSM 12680] Length = 294 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 170/286 (59%), Gaps = 14/286 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 ++SG ++VG N GKST +N +G KV+IV+ K QTTR+ ++GI + ++ QI+F+DTPG Sbjct: 3 TKSGFASIVGRPNVGKSTFLNTVIGQKVAIVSEKPQTTRNRIQGIYTCEQGQIIFIDTPG 62 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + M+R + +T + AD+V +V + ++ ++++ + K S+ + L++NK Sbjct: 63 IHRPRHKLGEYMVRTAHATAREADVVLYMVSAKDGMEKGDEEIIEFLTKTSAPVFLVVNK 122 Query: 140 IDCVKPERLLEQAEIA-------NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ID L++Q E++ ++ F E T+ +SA G ++ + LP+ P+ Sbjct: 123 ID------LVDQDEVSRCIGSFHSRFRFAE-TWPISAIMGTNVHALIRKILDYLPVGPYY 175 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y DQ++D P AE+ REK +E+P+S V E+ +E+K ++ +R V++ ER Sbjct: 176 YPPDQVTDQPERFIVAELIREKALYFTREEVPHSLAVEVEEMKERKGNTVYVRAVVFTER 235 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GK+G +K I A+ +I +L V+L L+VKV+K W Sbjct: 236 DSQKAIVIGKSGSMLKKIGEAARLDIESLLGVNVYLDLWVKVRKGW 281 >gi|319651594|ref|ZP_08005721.1| era protein [Bacillus sp. 2_A_57_CT2] gi|317396661|gb|EFV77372.1| era protein [Bacillus sp. 2_A_57_CT2] Length = 306 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 94/279 (33%), Positives = 163/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKST +NR +G K++I++ K QTTR+ V+G+++ ++Q +F+DTPGI Sbjct: 11 KSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNDAQFIFIDTPGI 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D++ +V++ +L++ + + L++NKI Sbjct: 71 HKPKHKLGDFMMKVAQNTLKEVDVILFMVNAQEGFGRGEEFILEKFQSVRTPIFLVINKI 130 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL+ E + + +SA +G+ + +L + +P P Y ADQ++D Sbjct: 131 DQVHPDELLKIIESYKEKYEFSEIIPISALEGNNVETLLGQIKEYIPEGPQFYPADQVTD 190 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P +E+ REK +EIP+S V +K E ++D ++ + I VER SQK I+ Sbjct: 191 HPERFIVSELIREKALHLTREEIPHSLAVTIDKMERREDKDVIHVMATIIVERDSQKGIV 250 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G+ +K I A+ +I +L V L L+VKVQKDW Sbjct: 251 IGKQGKMLKEIGKRARVDIENLLGSKVFLELWVKVQKDW 289 >gi|226311653|ref|YP_002771547.1| GTP-binding protein [Brevibacillus brevis NBRC 100599] gi|226094601|dbj|BAH43043.1| probable GTP-binding protein [Brevibacillus brevis NBRC 100599] Length = 305 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 163/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N VG K++I+++K QTTR+ + + + +E QI+FLDTPGI Sbjct: 11 KSGFVSIVGRPNVGKSTLLNHIVGHKIAIMSNKPQTTRNKITAVHTTEEGQIIFLDTPGI 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ ++ +T+ D+V VVD+ + +++ + + + + L++NKI Sbjct: 71 HKPQSKLGNYMVSVAENTLNEVDLVLFVVDATEKRGAGDDYIIERLKQVKTPVFLVINKI 130 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V PE LL + KL ++ +SA +G+ + + + P Y ADQ++D Sbjct: 131 DKVHPEALLPIIDDYRKLYDFKQIVPISALEGNNTASLQQAILGEMEEGPMYYPADQVTD 190 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ REK+ +E+P+S VV E+ + ++G L I IYVER SQ+ I+ Sbjct: 191 HPERFVAAELIREKVLHLTREEVPHSIAVVIEEMKRGENGKTLYIYAAIYVERDSQRGIL 250 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G+ GQ +K I A+K+I ++ V L L++KV+KDW Sbjct: 251 IGQKGQMLKEIGQRARKDIERLMGDQVFLELWIKVKKDW 289 >gi|288801361|ref|ZP_06406815.1| GTP-binding protein Era [Prevotella sp. oral taxon 299 str. F0039] gi|288331744|gb|EFC70228.1| GTP-binding protein Era [Prevotella sp. oral taxon 299 str. F0039] Length = 293 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/278 (39%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG K+SI T K QTTR + GIV+ ++ QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNLLVGEKISIATFKAQTTRHRIMGIVNTEDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D + NI + L+++ +IL++NKI Sbjct: 63 LKPNYRLQESMLAFSESALTDADILLYVTDVIENPEKNI-EFLEKVQHLDIPIILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L E + L+ + +SA G D +LN + LP +P + DQ++D Sbjct: 122 DMSDQKTLGSLVEKWHSLLPKAEILPLSALNKFGVDILLNRIKDLLPDSPPFFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L KEIPYS V E+++E I IR +IYVER SQK I++ Sbjct: 182 KPARFFVSEIIREKILLFYDKEIPYSVEVRVEEFKEDSK-LIRIRVIIYVERNSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + + ++L +FVKV KDW Sbjct: 241 GHQGVALKKVSSEARKSLERFFGKKIYLEIFVKVDKDW 278 >gi|94265607|ref|ZP_01289351.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|93453886|gb|EAT04244.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] Length = 299 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 108/280 (38%), Positives = 160/280 (57%), Gaps = 8/280 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VAL+GA NAGKSTL+NR +G K++IVT K QTTR+ + G+V+ ++ Q+V LDTPG+ Sbjct: 12 GFVALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILGVVNHRDYQMVLLDTPGLHR 71 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILN 138 AK+ + M+RL+ + D+V +VD + E + + LL+E K + +L+ N Sbjct: 72 AKNRLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHAQKLLREAGKPA---LLLGN 128 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + E+LL ++ + +SA G GC L LP P ++ D Sbjct: 129 KIDRIGKEKLLPLIAAWQEVYPFQAIIPLSALTGEGCQLFLTEASRLLPTGPRLFPEDIP 188 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D EI REK+ L E+PYS VV +++ EK G I+ I VE+ SQK I Sbjct: 189 TDASERFICGEIIREKIMLLTRDELPYSVAVVIDQFLEKP-GMTTIQATIMVEKDSQKGI 247 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G ++ I A++EI +L Q V L L+VKVQK+W Sbjct: 248 VIGKKGVMLQQIGERARREIETMLGQKVLLKLWVKVQKNW 287 >gi|281425283|ref|ZP_06256196.1| hypothetical protein HMPREF0971_02255 [Prevotella oris F0302] gi|281400576|gb|EFB31407.1| GTP-binding protein Era [Prevotella oris F0302] Length = 293 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDCQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M+ S S + ADI+ V D + N+ D L ++ K ++L++NKI Sbjct: 63 LKPNYKMQEMMLAFSESALTDADILLYVTDVVENPEKNM-DFLDKVKKMKIPVLLLVNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + + L+ + +SA G D +L + LP +P + DQ++D Sbjct: 122 DESDQKTLGDIVTKWHSLLPNAEILPLSAKNKFGVDMLLKRIKELLPESPAYFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS V E+++E D I I VIYVER SQK I++ Sbjct: 182 KPAKFFVSEIIREKILLYYDKEIPYSVEVRVERFKE-NDSVIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + + + + L FVKV KDW Sbjct: 241 GHQGIALKKVSSEARKALEKFFGKKIFLETFVKVDKDW 278 >gi|224025981|ref|ZP_03644347.1| hypothetical protein BACCOPRO_02732 [Bacteroides coprophilus DSM 18228] gi|224019217|gb|EEF77215.1| hypothetical protein BACCOPRO_02732 [Bacteroides coprophilus DSM 18228] Length = 293 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 163/278 (58%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI++ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D+ + N + ++++ + ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSESALVDADVLLYVTDTIEQPDKN-QEFMEKVRRLDVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L++ + ++++ + VSA D V+ + +P +P + DQ++D Sbjct: 122 DLSNQKDLVKLVDQWHEMLPKAEIIPVSAKARFNVDAVMKRIRELIPDSPPYFGKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPY+ VV E+++E+ SI I VIYVER SQK I++ Sbjct: 182 KPARFFVTEIIREKILLYYDKEIPYAVEVVVEQFKEEA-KSIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA+K + ++ ++L FVKV KDW Sbjct: 241 GKQGKALKKVATEARKTLEHFFQKTIYLETFVKVDKDW 278 >gi|258516219|ref|YP_003192441.1| GTP-binding protein Era [Desulfotomaculum acetoxidans DSM 771] gi|257779924|gb|ACV63818.1| GTP-binding protein Era [Desulfotomaculum acetoxidans DSM 771] Length = 300 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 163/279 (58%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL+NR +G K++I++ K QTTR + +++ Q++FLDTPGI Sbjct: 8 RSGFVAIIGRPNVGKSTLMNRMIGRKIAIMSDKPQTTRHKIYCVLTRDNYQVIFLDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + ++ S ST D++ +V+++ +L+ +AK + + L++NK+ Sbjct: 68 HKPKHKLGQHLVDTSLSTFGEVDLILFLVEANSFCGAGDRYILEHLAKIKTPVFLVINKV 127 Query: 141 DCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V E+LL E+ +K F ++ VSA G D + + LP P Y D ++ Sbjct: 128 DLVPKEQLLPLIDELHSKYKF-QEVIPVSALNGDNVDRLERLIAGCLPPGPKYYPDDMLT 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P AE+ REK+ +EIP+S V+ E+ EE+ + ++ + +IYVER SQK I+ Sbjct: 187 DKPEQFIMAELIREKILHLTSQEIPHSVAVIVEQLEERPNNTLYVGALIYVERDSQKGII 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ +K I A++EI ++L + L + VKV++DW Sbjct: 247 IGKKGQMLKNIGQLARQEIEKLLGSKIFLDIRVKVREDW 285 >gi|289578133|ref|YP_003476760.1| GTP-binding protein Era [Thermoanaerobacter italicus Ab9] gi|289527846|gb|ADD02198.1| GTP-binding protein Era [Thermoanaerobacter italicus Ab9] Length = 302 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G VAL+G TN GKSTL+N + K++I + K QTTR+ +RGI++ E Q++F+DTPGI Sbjct: 4 KAGFVALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + MI ++ T+K D++ +++ E+ +++ + + + +IL++NKI Sbjct: 64 HKPKSKLSEFMIEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V ER+ E +I K + +SA + D + + S LP P Y D I+D Sbjct: 124 DLVPEERIEETIKIFKKEYAFKDVVAISAIENKNIDLLKEKIVSLLPEGPKYYLEDYITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AEI REK+ L +E+P+ V E +E++D I+ I IY E+ S K I+ Sbjct: 184 QPEKLIVAEIIREKMLHFLEEEVPHGVYVEVESIKEREDKDIIDIEAYIYCEKESHKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNGQ +K I A++++ E E+ V L L+VK +K W Sbjct: 244 IGKNGQMLKKIGQSARQDLEEFYEKQVFLDLWVKTRKKW 282 >gi|308811126|ref|XP_003082871.1| GTP-binding protein-like (ISS) [Ostreococcus tauri] gi|116054749|emb|CAL56826.1| GTP-binding protein-like (ISS) [Ostreococcus tauri] Length = 413 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 116/288 (40%), Positives = 167/288 (57%), Gaps = 12/288 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG NAGKSTL+N VG K+SIVT K QTTR + GIVSE Q+V LDTPG+ Sbjct: 111 KSGYVAIVGRPNAGKSTLMNDLVGTKLSIVTFKPQTTRHRILGIVSEDAYQMVLLDTPGV 170 Query: 81 ----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 FN D +M++ +++ +AD++ +VD+ R+ L + KR LI Sbjct: 171 MVEEFNKLDG---IMLKSVRNSMANADVMFYIVDAARDPYGAWEGLAPKKGKRVP-TALI 226 Query: 137 LNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 LNK D V ER++E + I+ +SA G ++V N+ LPL P +Y Sbjct: 227 LNKCDLVGDRERIMELIDYFRAQDGIDDVLPISALNSTGVENVKNWALDRLPLGPTLYPK 286 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS--ILIRQVIYVERP 253 + IS+ P F AEI REK+FL +E+PYS+ V E +E +DG+ LI +YVER Sbjct: 287 EAISEHPERFFIAEIIREKIFLQYKQEVPYSTQVWIEAHKE-RDGAKKDLILAKVYVERQ 345 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQ I++G+ G +K +S A+++I + L +PV L + VKV+ W D Sbjct: 346 SQIGIIVGQGGAAMKKLSSTAREDIEKFLGRPVFLDIQVKVRDGWRQD 393 >gi|90961872|ref|YP_535788.1| GTP-binding protein Era [Lactobacillus salivarius UCC118] gi|122449031|sp|Q1WTU6|ERA_LACS1 RecName: Full=GTPase Era gi|90821066|gb|ABD99705.1| GTP-binding protein [Lactobacillus salivarius UCC118] gi|300214599|gb|ADJ79015.1| Like GTP-binding protein [Lactobacillus salivarius CECT 5713] Length = 300 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 104/284 (36%), Positives = 172/284 (60%), Gaps = 2/284 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +Q+N SG VA++G N GKST +NR VG K++I++ K QTTR+ ++GI +E ++QIVF+ Sbjct: 1 MQNNFHSGFVAILGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGIYTEDDAQIVFI 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI M+ + ST+ D V +V++ ++ +++ + + L Sbjct: 61 DTPGIHKPHSRLGDFMVESALSTLNEVDAVLFMVNATQKRGRGDDFIIERLKNVKKPIYL 120 Query: 136 ILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++NKID + P++LL+ + N L + E F +SA +G+ C +++ L +TLP P Y Sbjct: 121 VINKIDQIHPDKLLQIMDDYRNTLDYAE-VFPISALEGNNCPELIESLVNTLPEGPQYYP 179 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 ADQI+D P E+ REK+ +E+P+S VV ++ + +L++ I VER S Sbjct: 180 ADQITDHPERFIAGELIREKVLELTREEVPHSVAVVVDRIHREDAEKVLVQATIVVERNS 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G+ +K I ++A+K+I +L V+L L+VKVQ +W Sbjct: 240 QKGIIIGKGGKMLKQIGVKARKDIELMLGDKVYLELWVKVQPNW 283 >gi|255011701|ref|ZP_05283827.1| GTP-binding protein Era [Bacteroides fragilis 3_1_12] gi|313149535|ref|ZP_07811728.1| GTP-binding protein Era [Bacteroides fragilis 3_1_12] gi|313138302|gb|EFR55662.1| GTP-binding protein Era [Bacteroides fragilis 3_1_12] Length = 293 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 102/278 (36%), Positives = 160/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D N ++ ++++ ++++ ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALADADVLLYVTDVIETPDKN-NEFIQKVRQQTAPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L++ E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLTDQEKLVKLVEDWKELLPQAEIIPISAATKFNVDYVMKRIKELLPDSPPYFDKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E I I VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEQFKEDA-KKIHIHAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + V L +VKV KDW Sbjct: 241 GKQGKALKKVATEARRDLERFFGKTVFLETYVKVDKDW 278 >gi|154686789|ref|YP_001421950.1| GTP-binding protein Era [Bacillus amyloliquefaciens FZB42] gi|154352640|gb|ABS74719.1| Era [Bacillus amyloliquefaciens FZB42] Length = 301 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 167/278 (60%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+++ SQ +F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D+V ++++ +++++ + S+ + LI+NKI Sbjct: 67 HKPKHKLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVFLIVNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P++LL + ++ +SA +G+ + +L + + LP P Y +DQ++D Sbjct: 127 DKIHPDQLLLLIDEYRTRYPFKEIVPISALEGNNVETLLAQIEAYLPEGPQFYPSDQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +E+P+S V E + +++GS+ + I VER SQK I++ Sbjct: 187 HPERFIISELIREKVLHLTREEVPHSIAVAIESIKGQENGSVHVAATIVVERDSQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + A+ +I +L V+L L+VKVQKDW Sbjct: 247 GKKGALLKEVGKRARADIEALLGSRVYLELWVKVQKDW 284 >gi|163816524|ref|ZP_02207888.1| hypothetical protein COPEUT_02714 [Coprococcus eutactus ATCC 27759] gi|158448224|gb|EDP25219.1| hypothetical protein COPEUT_02714 [Coprococcus eutactus ATCC 27759] Length = 299 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 94/279 (33%), Positives = 162/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKSTL+NR +G K++I ++K QTTR+ ++ + + + QI+FLDTPGI Sbjct: 6 KSGFVSIIGRPNVGKSTLMNRLIGQKIAITSNKAQTTRNRIQTVYTSDKGQIIFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M++++ ST+ D+V +V++ + +++++ + +I+++NKI Sbjct: 66 NRAKNKLGEYMLKVAESTLDEVDVVLWIVEATTFIGAGERYIIEQLQHVKTPIIVVVNKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V+ ++ E + VSA KG D++++ + LP P Y D ++D Sbjct: 126 DNVEEGKVFEAINTYKDACDFAEIVPVSALKGKNTDELIDTIMKYLPYGPQYYDEDTVTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ RE+ L KE+P+ VV + +E+ +G I+ I I ER S K I+ Sbjct: 186 QPERQIVAELIREQALRQLDKEVPHGIAVVIDSMKERPNGGIIDIDATIICERDSHKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+ I +L+ V+L L+VKV+KDW Sbjct: 246 IGKQGAMLKKIGTHARYGIERLLDTKVNLKLWVKVKKDW 284 >gi|194017708|ref|ZP_03056318.1| GTP-binding protein Era [Bacillus pumilus ATCC 7061] gi|194010608|gb|EDW20180.1| GTP-binding protein Era [Bacillus pumilus ATCC 7061] Length = 301 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 163/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+++ SQ +F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNTSQTIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D++ ++++ +++ + + S+ + L++NKI Sbjct: 67 HKPKHKLGDFMMKVATNTLKEVDLILFMINAKEGYGKGDEFIIERLKQTSTPVFLVVNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ L + ++ +SA +G+ D +L + LP P Y ADQ++D Sbjct: 127 DQIHPDELFLLIDEYRTRYPFKEIVPISALEGNNIDTLLQQVEGYLPEGPQFYPADQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +EIP+S V E + ++G I + I VER SQK I++ Sbjct: 187 HPERFIISELIREKVLHLTREEIPHSIAVAIESIKPDENGKIHVAATIVVERDSQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + +A+++I +L V+L L+VKVQKDW Sbjct: 247 GKRGSLLKEVGQKARRDIEALLGSKVYLELWVKVQKDW 284 >gi|29376905|ref|NP_816059.1| GTP-binding protein Era [Enterococcus faecalis V583] gi|227519872|ref|ZP_03949921.1| GTP-binding protein Era [Enterococcus faecalis TX0104] gi|227553941|ref|ZP_03983988.1| GTP-binding protein Era [Enterococcus faecalis HH22] gi|229549418|ref|ZP_04438143.1| GTP-binding protein Era [Enterococcus faecalis ATCC 29200] gi|255975189|ref|ZP_05425775.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis T2] gi|256617033|ref|ZP_05473879.1| GTP-binding protein Era [Enterococcus faecalis ATCC 4200] gi|256763103|ref|ZP_05503683.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis T3] gi|256853771|ref|ZP_05559136.1| GTP-binding protein Era [Enterococcus faecalis T8] gi|256956687|ref|ZP_05560858.1| GTP-binding protein Era [Enterococcus faecalis DS5] gi|256961296|ref|ZP_05565467.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis Merz96] gi|256963577|ref|ZP_05567748.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis HIP11704] gi|257079642|ref|ZP_05574003.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis JH1] gi|257082012|ref|ZP_05576373.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis E1Sol] gi|257084563|ref|ZP_05578924.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis Fly1] gi|257087441|ref|ZP_05581802.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis D6] gi|257090600|ref|ZP_05584961.1| small GTP-binding protein [Enterococcus faecalis CH188] gi|257416648|ref|ZP_05593642.1| GTP-binding protein Era [Enterococcus faecalis AR01/DG] gi|257419864|ref|ZP_05596858.1| small GTP-binding protein Era [Enterococcus faecalis T11] gi|257421948|ref|ZP_05598938.1| GTP-binding protein Era [Enterococcus faecalis X98] gi|293383580|ref|ZP_06629490.1| GTP-binding protein Era [Enterococcus faecalis R712] gi|293387307|ref|ZP_06631863.1| GTP-binding protein Era [Enterococcus faecalis S613] gi|294780922|ref|ZP_06746276.1| GTP-binding protein Era [Enterococcus faecalis PC1.1] gi|307270833|ref|ZP_07552121.1| GTP-binding protein Era [Enterococcus faecalis TX4248] gi|307271516|ref|ZP_07552788.1| GTP-binding protein Era [Enterococcus faecalis TX0855] gi|307277156|ref|ZP_07558260.1| GTP-binding protein Era [Enterococcus faecalis TX2134] gi|307285808|ref|ZP_07565942.1| GTP-binding protein Era [Enterococcus faecalis TX0860] gi|307287711|ref|ZP_07567754.1| GTP-binding protein Era [Enterococcus faecalis TX0109] gi|307290538|ref|ZP_07570450.1| GTP-binding protein Era [Enterococcus faecalis TX0411] gi|312899839|ref|ZP_07759158.1| GTP-binding protein Era [Enterococcus faecalis TX0470] gi|312905132|ref|ZP_07764253.1| GTP-binding protein Era [Enterococcus faecalis TX0635] gi|312906130|ref|ZP_07765142.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 512] gi|312909476|ref|ZP_07768331.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 516] gi|312953489|ref|ZP_07772329.1| GTP-binding protein Era [Enterococcus faecalis TX0102] gi|81436511|sp|Q831T9|ERA_ENTFA RecName: Full=GTPase Era gi|29344370|gb|AAO82129.1| GTP-binding protein Era [Enterococcus faecalis V583] gi|227072666|gb|EEI10629.1| GTP-binding protein Era [Enterococcus faecalis TX0104] gi|227176927|gb|EEI57899.1| GTP-binding protein Era [Enterococcus faecalis HH22] gi|229305655|gb|EEN71651.1| GTP-binding protein Era [Enterococcus faecalis ATCC 29200] gi|255968061|gb|EET98683.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis T2] gi|256596560|gb|EEU15736.1| GTP-binding protein Era [Enterococcus faecalis ATCC 4200] gi|256684354|gb|EEU24049.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis T3] gi|256710714|gb|EEU25757.1| GTP-binding protein Era [Enterococcus faecalis T8] gi|256947183|gb|EEU63815.1| GTP-binding protein Era [Enterococcus faecalis DS5] gi|256951792|gb|EEU68424.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis Merz96] gi|256954073|gb|EEU70705.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis HIP11704] gi|256987672|gb|EEU74974.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis JH1] gi|256990042|gb|EEU77344.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis E1Sol] gi|256992593|gb|EEU79895.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis Fly1] gi|256995471|gb|EEU82773.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis D6] gi|256999412|gb|EEU85932.1| small GTP-binding protein [Enterococcus faecalis CH188] gi|257158476|gb|EEU88436.1| GTP-binding protein Era [Enterococcus faecalis ARO1/DG] gi|257161692|gb|EEU91652.1| small GTP-binding protein Era [Enterococcus faecalis T11] gi|257163772|gb|EEU93732.1| GTP-binding protein Era [Enterococcus faecalis X98] gi|291079092|gb|EFE16456.1| GTP-binding protein Era [Enterococcus faecalis R712] gi|291083205|gb|EFE20168.1| GTP-binding protein Era [Enterococcus faecalis S613] gi|294452048|gb|EFG20496.1| GTP-binding protein Era [Enterococcus faecalis PC1.1] gi|295113464|emb|CBL32101.1| GTP-binding protein Era [Enterococcus sp. 7L76] gi|306498393|gb|EFM67898.1| GTP-binding protein Era [Enterococcus faecalis TX0411] gi|306501449|gb|EFM70752.1| GTP-binding protein Era [Enterococcus faecalis TX0109] gi|306502569|gb|EFM71836.1| GTP-binding protein Era [Enterococcus faecalis TX0860] gi|306506086|gb|EFM75252.1| GTP-binding protein Era [Enterococcus faecalis TX2134] gi|306511788|gb|EFM80786.1| GTP-binding protein Era [Enterococcus faecalis TX0855] gi|306512834|gb|EFM81478.1| GTP-binding protein Era [Enterococcus faecalis TX4248] gi|310627776|gb|EFQ11059.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 512] gi|310628698|gb|EFQ11981.1| GTP-binding protein Era [Enterococcus faecalis TX0102] gi|310631522|gb|EFQ14805.1| GTP-binding protein Era [Enterococcus faecalis TX0635] gi|311290149|gb|EFQ68705.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 516] gi|311293089|gb|EFQ71645.1| GTP-binding protein Era [Enterococcus faecalis TX0470] gi|315025403|gb|EFT37335.1| GTP-binding protein Era [Enterococcus faecalis TX2137] gi|315030211|gb|EFT42143.1| GTP-binding protein Era [Enterococcus faecalis TX4000] gi|315032903|gb|EFT44835.1| GTP-binding protein Era [Enterococcus faecalis TX0017] gi|315035613|gb|EFT47545.1| GTP-binding protein Era [Enterococcus faecalis TX0027] gi|315144805|gb|EFT88821.1| GTP-binding protein Era [Enterococcus faecalis TX2141] gi|315146685|gb|EFT90701.1| GTP-binding protein Era [Enterococcus faecalis TX4244] gi|315150151|gb|EFT94167.1| GTP-binding protein Era [Enterococcus faecalis TX0012] gi|315152156|gb|EFT96172.1| GTP-binding protein Era [Enterococcus faecalis TX0031] gi|315155343|gb|EFT99359.1| GTP-binding protein Era [Enterococcus faecalis TX0043] gi|315159081|gb|EFU03098.1| GTP-binding protein Era [Enterococcus faecalis TX0312] gi|315161673|gb|EFU05690.1| GTP-binding protein Era [Enterococcus faecalis TX0645] gi|315164810|gb|EFU08827.1| GTP-binding protein Era [Enterococcus faecalis TX1302] gi|315166396|gb|EFU10413.1| GTP-binding protein Era [Enterococcus faecalis TX1341] gi|315170292|gb|EFU14309.1| GTP-binding protein Era [Enterococcus faecalis TX1342] gi|315173673|gb|EFU17690.1| GTP-binding protein Era [Enterococcus faecalis TX1346] gi|315574358|gb|EFU86549.1| GTP-binding protein Era [Enterococcus faecalis TX0309B] gi|315579040|gb|EFU91231.1| GTP-binding protein Era [Enterococcus faecalis TX0630] gi|315580167|gb|EFU92358.1| GTP-binding protein Era [Enterococcus faecalis TX0309A] gi|323481399|gb|ADX80838.1| GTP-binding protein Era [Enterococcus faecalis 62] gi|327535695|gb|AEA94529.1| GTP-binding protein Era [Enterococcus faecalis OG1RF] Length = 300 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 170/278 (61%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++GI + E+QIVF+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ +++ ++ D +V + ++ +++ + +S + LI+NKI Sbjct: 66 HKPKHRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL E +K + ++ +SAT+G+ + +++ L +P P + DQI+D Sbjct: 126 DKVHPDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPDDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ L EIP+S VV + + ++ + ++ I VER SQK I++ Sbjct: 186 HPEYFIVSELIREKVLLLTRDEIPHSVAVVVDSMKRDENDKVHVQATIIVERDSQKGIII 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I +A+++I +L+ V+L L+VKVQKDW Sbjct: 246 GKGGKMLKQIGTKARQDIEYLLDDKVYLELWVKVQKDW 283 >gi|291550500|emb|CBL26762.1| GTP-binding protein Era [Ruminococcus torques L2-14] Length = 299 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 165/284 (58%), Gaps = 3/284 (1%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +QDN +SG V L+G N GKSTL+NR +G K++I ++K QTTR+ ++ +++ +E QIVF+ Sbjct: 1 MQDNFKSGFVTLIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M+ ++ ++ D+V +V+ + +++++ K + +IL Sbjct: 61 DTPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSTFIGAGEKHIIEQLKKVKTPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NK+D VK E +L + K + VSA +G D+++N + LP P Y Sbjct: 121 VINKVDMVKKEEVLTFIDAYRKECDFAEIVPVSARRGDNTDELVNVIMKYLPYGPQFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 D I+D P AEI REK L++EIP+ V ++ K + + I I ER S Sbjct: 181 DTITDQPERQIVAEIIREKALHSLNEEIPHGIAVAIDQM--KMNHKVCHIDATIICERDS 238 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ EI +L+ V+L L+VKVQK+W Sbjct: 239 HKGIIIGKQGSMLKKIGSTARFEIERLLDCKVNLKLWVKVQKNW 282 >gi|296333313|ref|ZP_06875766.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675182|ref|YP_003866854.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii str. W23] gi|296149511|gb|EFG90407.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413426|gb|ADM38545.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii str. W23] Length = 301 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+++ SQ +F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D++ ++++ +++++ K S+ + LI+NKI Sbjct: 67 HKPKHKLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQKMSTPVFLIVNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P++LL + ++ +SA +G+ + +L + + LP P Y +DQ++D Sbjct: 127 DKIHPDQLLLLIDEYRGRYPFKEIVPISALEGNNIETLLAQIEAYLPEGPQFYPSDQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +EIP+S V E + + +GS+ + I VER SQK I++ Sbjct: 187 HPERFIISELIREKVLHLTREEIPHSIAVAIESIKGQDNGSVHVAATIVVERDSQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + A+ +I +L V+L L+VKVQKDW Sbjct: 247 GKKGSLLKEVGKRARADIEALLGSRVYLELWVKVQKDW 284 >gi|332702330|ref|ZP_08422418.1| GTP-binding protein Era-like-protein [Desulfovibrio africanus str. Walvis Bay] gi|332552479|gb|EGJ49523.1| GTP-binding protein Era-like-protein [Desulfovibrio africanus str. Walvis Bay] Length = 307 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 110/294 (37%), Positives = 169/294 (57%), Gaps = 10/294 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 N + G VAL+G NAGKST +N +G KV+IV+ K QTTR+ + GI + + Q+VFLDT Sbjct: 5 SNRKFGMVALMGPPNAGKSTFLNHVLGQKVAIVSPKPQTTRNQISGIWTTERGQVVFLDT 64 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSS 131 PG+ + +K +++ +W + +++V + +D+ + L + + K Sbjct: 65 PGVHQLRGKMNKFLLQSAWQAVAQSNVVLVFLDAAAYAGRLEKFSSESSPLTQGLQKPGL 124 Query: 132 RLILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 LI+ +NK+D V K + L A IA E F +SA G G ++L ++ + LP Sbjct: 125 PLIVAVNKVDKVKNKADLLSLMARIAEVWPGAE-IFPISALTGDGVPELLEHVLAKLPEG 183 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVI 248 ++ DQIS +PM AE REKLF+ L +E+PYS+ V E+WEE+ + + I VI Sbjct: 184 TAMFPEDQISTVPMRFMAAETVREKLFIALRQELPYSTAVEIEQWEEEPERNFTRIGAVI 243 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 Y RPS K +++GK G +K I EA+ E+ E+LE V L L+VKV++ W DP Sbjct: 244 YTSRPSHKAMIIGKQGSLLKQIGQEARLELEEMLEGKVFLELWVKVKEGWTEDP 297 >gi|16079583|ref|NP_390407.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str. 168] gi|221310453|ref|ZP_03592300.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str. 168] gi|221314776|ref|ZP_03596581.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319699|ref|ZP_03600993.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str. JH642] gi|221323976|ref|ZP_03605270.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str. SMY] gi|321312012|ref|YP_004204299.1| GTPase Era [Bacillus subtilis BSn5] gi|1168646|sp|P42182|ERA_BACSU RecName: Full=GTPase Era; AltName: Full=Bex protein gi|606745|gb|AAB59994.1| Bex [Bacillus subtilis] gi|1303826|dbj|BAA12482.1| YqfH [Bacillus subtilis] gi|2634961|emb|CAB14458.1| GTP-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|291484975|dbj|BAI86050.1| GTP-binding protein Era [Bacillus subtilis subsp. natto BEST195] gi|320018286|gb|ADV93272.1| GTPase Era [Bacillus subtilis BSn5] Length = 301 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+++ SQ +F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D++ ++++ +++++ S+ + LI+NKI Sbjct: 67 HKPKHKLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQTMSTPVFLIVNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P++LL + K ++ +SA +G+ + +L + + LP P Y +DQ++D Sbjct: 127 DKIHPDQLLLLIDEYRKRYPFKEIVPISALEGNNIETLLAQIEAYLPEGPQFYPSDQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +EIP+S V E + + +GS+ + I VER SQK I++ Sbjct: 187 HPERFIISELIREKVLHLTREEIPHSIAVAIESIKGQDNGSVHVAATIVVERDSQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + A+ +I +L V+L L+VKVQKDW Sbjct: 247 GKKGSLLKEVGKRARADIEALLGSRVYLELWVKVQKDW 284 >gi|297544408|ref|YP_003676710.1| GTP-binding protein Era [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842183|gb|ADH60699.1| GTP-binding protein Era [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 302 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G VAL+G TN GKSTL+N + K++I + K QTTR+ +RGI++ E Q++F+DTPGI Sbjct: 4 KAGFVALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + MI ++ T+K D++ +++ E+ +++ + + + +IL++NKI Sbjct: 64 HKPKSKLSEFMIEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V ER+ E +I K + +SA + D + + S LP P Y D I+D Sbjct: 124 DLVPEERIEETIKIFKKEYAFKDVVAISAIENKNIDLLKEKIVSLLPEGPKYYLEDYITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AEI REK+ L +E+P+ V E +E++D I+ I IY E+ S K I+ Sbjct: 184 QPEKLIVAEIIREKMLHFLEEEVPHGVYVEVESIKEREDKDIVDIEAYIYCEKESHKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNGQ +K I A++++ E E+ V L L+VK +K W Sbjct: 244 IGKNGQMLKKIGQSARQDLEEFYEKQVFLDLWVKTRKKW 282 >gi|300860627|ref|ZP_07106714.1| GTP-binding protein Era [Enterococcus faecalis TUSoD Ef11] gi|300849666|gb|EFK77416.1| GTP-binding protein Era [Enterococcus faecalis TUSoD Ef11] Length = 300 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 170/278 (61%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++GI + E+QIVF+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ +++ ++ D +V + ++ +++ + +S + LI+NKI Sbjct: 66 HKPKHRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDGFIIERLKNNNSPVYLIINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL E +K + ++ +SAT+G+ + +++ L +P P + DQI+D Sbjct: 126 DKVHPDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPDDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ L EIP+S VV + + ++ + ++ I VER SQK I++ Sbjct: 186 HPEYFIVSELIREKVLLLTRDEIPHSVAVVVDSMKRDENDKVHVQATIIVERDSQKGIII 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I +A+++I +L+ V+L L+VKVQKDW Sbjct: 246 GKGGKMLKQIGTKARQDIEYLLDDKVYLELWVKVQKDW 283 >gi|22328152|ref|NP_201448.2| GTP binding / RNA binding [Arabidopsis thaliana] gi|17473914|gb|AAL38371.1| GTP-binding protein-like [Arabidopsis thaliana] gi|20259794|gb|AAM13244.1| GTP-binding protein-like [Arabidopsis thaliana] gi|332010835|gb|AED98218.1| GTP-binding protein Era [Arabidopsis thaliana] Length = 427 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 104/287 (36%), Positives = 167/287 (58%), Gaps = 9/287 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL N+ +G K+SIVT K QTTR + GI S E Q++ DTPG+ Sbjct: 128 RSGYVAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGV 187 Query: 81 FNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE---IAKRSSRLI 134 K H+L M++ +AD V ++VD+ + NI ++LKE ++ ++ Sbjct: 188 IEKK--MHRLDTMMMKNVRDAAINADCVVILVDACK-TPTNIEEVLKEGLGDLEKKPPML 244 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 L++NK D +KP + ++ E K +++ VSA GHG +DV ++ S LP P Y Sbjct: 245 LVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGIEDVKEWILSKLPFGPPYYP 304 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D +S+ P F +EI REK+F+ E+PY+ V ++ + I+ + V++ S Sbjct: 305 KDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFIQVEVVVDKNS 364 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G+ +KT++ A+ +I + L++ V L + VKV+++W D Sbjct: 365 QKIILIGKEGKALKTLATAARLDIEDFLQKKVFLEVEVKVKENWRQD 411 >gi|304403961|ref|ZP_07385623.1| GTP-binding protein Era [Paenibacillus curdlanolyticus YK9] gi|304346939|gb|EFM12771.1| GTP-binding protein Era [Paenibacillus curdlanolyticus YK9] Length = 306 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 101/289 (34%), Positives = 163/289 (56%), Gaps = 7/289 (2%) Query: 17 QDNSR------SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 QDN SG VA+VG N GKSTL+N +G K++I++ K QTTR+ + G+ ++ + Sbjct: 3 QDNQNGKKKFHSGFVAIVGRPNVGKSTLMNHIIGQKIAIMSDKPQTTRNKIHGVYTKDDK 62 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-R 129 QIVFLDTPGI + M++ + + + + ++D + +++++ + Sbjct: 63 QIVFLDTPGIHKPQSKLGNFMVKSAVNALDEVEAALFLIDVSEGIGGGDRFIIEQLKNVK 122 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ++ + L++NKID VKPE LL+ L + +SA +G+ + +L L LP Sbjct: 123 NTPVFLVMNKIDKVKPEELLKIITQYKDLYDFAEIIPISALQGNNVETLLEQLGRYLPEG 182 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 P Y ADQI+D P AE+ REK+ +EIP+S V E +++G + I VI+ Sbjct: 183 PQYYPADQITDHPEQFVCAELIREKILHQTREEIPHSIAVTIEDMRVQENGVVYIGAVIF 242 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VER SQK I++GK G +K + +A+++I +L L L+VKV+KDW Sbjct: 243 VERDSQKGIIIGKQGALLKEVGKQARRDIETLLGSRTFLELWVKVKKDW 291 >gi|299141483|ref|ZP_07034619.1| GTP-binding protein Era [Prevotella oris C735] gi|298576819|gb|EFI48689.1| GTP-binding protein Era [Prevotella oris C735] Length = 293 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ +G ++SI T K QTTR + GIV+ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNQLIGERISIATFKAQTTRHRIMGIVNTDDCQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++M+ S S + ADI+ V D + N+ D L ++ K ++L++NKI Sbjct: 63 LKPNYKMQEMMLAFSESALTDADILLYVTDVVENPEKNM-DFLDKVKKMKIPVLLLVNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + + L+ + +SA G D +L + LP +P + DQ++D Sbjct: 122 DESDQKTLGDIVTKWHSLLPNAEILPLSAKNKFGVDMLLKRIKELLPESPAYFDKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS V E+++E D I I VIYVER SQK I++ Sbjct: 182 KPAKFFVSEIIREKILLYYDKEIPYSVEVRVERFKE-NDSVIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + + + + L FVKV KDW Sbjct: 241 GHQGIALKKVSSEARKALEKFFGKKIFLETFVKVDKDW 278 >gi|240145039|ref|ZP_04743640.1| GTP-binding protein Era [Roseburia intestinalis L1-82] gi|257202864|gb|EEV01149.1| GTP-binding protein Era [Roseburia intestinalis L1-82] gi|291535364|emb|CBL08476.1| GTP-binding protein Era [Roseburia intestinalis M50/1] gi|291538175|emb|CBL11286.1| GTP-binding protein Era [Roseburia intestinalis XB6B4] Length = 302 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 164/285 (57%), Gaps = 2/285 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVF 74 +++N +SG V ++G N GKSTL+N +G K++I ++K QTTR+ ++ + ++ E QIVF Sbjct: 1 MKENFKSGFVTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERGQIVF 60 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPGI AK+ + M+ + T+ D++ +V+ + +++++ K + +I Sbjct: 61 LDTPGIHKAKNKLGEYMVNTAEHTLNEVDVILWLVEPSNFIGAGEQHIIEQLKKTKTPVI 120 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 L++NK+D V +++LE + K+ + SA + D VL+ + LP P Y Sbjct: 121 LVINKVDTVSRDKILEFIDTYRKVYDFAEIVPASALRAQNLDTVLDMIFKYLPYGPQFYD 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 D I+D P AEI REK L EIP+ V ++ +++K +I+ I I ER Sbjct: 181 EDTITDQPERAIVAEIIREKALHALDDEIPHGIAVCIDRMKQRKGQNIMDIEATIVCERD 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GK G +K I A+ EI +LE+ V+L L+VKV+KDW Sbjct: 241 SHKGIVIGKGGAMLKKIGSNARYEIERLLEEQVNLKLWVKVKKDW 285 >gi|294463173|gb|ADE77123.1| unknown [Picea sitchensis] Length = 433 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 109/292 (37%), Positives = 166/292 (56%), Gaps = 9/292 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + RSG VA+VG N GKSTL+N+ +G K+SIVT K QTTR + G+ S + Q+V Sbjct: 129 VGPDHRSGYVAVVGKPNVGKSTLLNQMIGQKLSIVTDKPQTTRHRILGLCSAPDYQMVLY 188 Query: 76 DTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KR 129 DTPG+ + HKL M++ S +AD V VVD + + ++DL +E K+ Sbjct: 189 DTPGVIQKE--MHKLDAMMMKNVHSATGNADCVLTVVDVCK-VPEKVNDLFEEDGVDLKK 245 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +L+LNK D +KP + ++ E K + +SA GHG +DV N++ S LP Sbjct: 246 KPPTLLVLNKKDLMKPGEIAKRMEWYEKFGGADHILSISAKYGHGVEDVKNWIVSKLPYG 305 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 P YS D IS+ P F AEI REK+F+ +E+PY+ V + + I I Sbjct: 306 PAYYSKDIISEHPERFFVAEIVREKIFMQYRQEVPYACQVNVASYIARPTSKHFIEIEIV 365 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VE+ +QK I++GK G+ +K ++ A+ +I + L++ V+L + VKV+ +W D Sbjct: 366 VEKGAQKIILIGKEGKALKLLATAARLDIEDFLQKQVYLEIKVKVKPNWRQD 417 >gi|302385324|ref|YP_003821146.1| GTP-binding protein Era [Clostridium saccharolyticum WM1] gi|302195952|gb|ADL03523.1| GTP-binding protein Era [Clostridium saccharolyticum WM1] Length = 301 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 163/284 (57%), Gaps = 1/284 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++N +SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + +++ QI+FL Sbjct: 1 MENNYKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M+ ++ T+K D+V +V+ + + +++ + + +IL Sbjct: 61 DTPGIHKAKNKLGEYMVSVAERTLKEVDVVLWLVEPTTYIGAGEQHIAEQLNQVKTPVIL 120 Query: 136 ILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NKID VK E +L + + VSA K D +L + LP P Y Sbjct: 121 AINKIDTVKNQEEILTFISAYKDVCRFAEIVPVSALKDKNTDLLLELIYKYLPAGPQYYD 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D PM +AE+ REK L+ EIP+ V EK +E+ +G + I I ER S Sbjct: 181 EDTVTDQPMRQISAELIREKALRLLNDEIPHGIAVTIEKMKERDNGIMDIEADIICERDS 240 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A++EI ++++ V+L L+VKV+K+W Sbjct: 241 HKGIIIGKGGTMLKKIGTAARREIEDLMDTKVNLQLWVKVRKEW 284 >gi|86131593|ref|ZP_01050191.1| GTP-binding protein Era [Dokdonia donghaensis MED134] gi|85818038|gb|EAQ39206.1| GTP-binding protein Era [Dokdonia donghaensis MED134] Length = 294 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 160/279 (57%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG ++SI+T K QTTR + GIV+ ++ Q++ DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ S + AD++ +V+ +ELK +I ++L++NK Sbjct: 64 IKPAYELQASMMDFVKSAFEDADVLLYIVELGEKELKD--EAFFNKIRGAKIPVLLLINK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID E L E ++ ++ V + F +SA + G V N + LP +P Y DQ++ Sbjct: 122 IDKGNEEMLGEALKLWSEKVPNAEVFAISALENFGVPQVFNRIIELLPESPAFYPKDQLT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F EI REK+ +H KEIPY+ + TE + E +D I +R VI VER SQK I+ Sbjct: 182 DKPERFFVNEIIREKILMHYKKEIPYAVEIDTEDFFE-EDEIIRMRSVIMVERDSQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G +K + +EA+K++ + + VHL L+VKV K+W Sbjct: 241 IGHKGTALKRVGVEARKDLEKFFGKQVHLELYVKVNKNW 279 >gi|123969012|ref|YP_001009870.1| GTP-binding protein Era [Prochlorococcus marinus str. AS9601] gi|123199122|gb|ABM70763.1| GTP-binding protein Era [Prochlorococcus marinus str. AS9601] Length = 303 Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 166/285 (58%), Gaps = 5/285 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG V L+G N GKSTL+N+ +G K++I + QTTR+ ++GI++ K+ QI+F+DTP Sbjct: 3 NYRSGFVTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTKDGQIIFVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ +++++ + S I D+V V+DS E +L + + I+ LN Sbjct: 63 GVHKPHHRLGEILVKNAKSAINGVDMVIFVIDSSEEPGRGDEYILNFLIANKTEFIVALN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF-MVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V E + + + I + F +VSA++G GC ++++ + LP P +Y + Sbjct: 123 KWDLVNKEFRNLRLDQYRRFFGIYRNFQVVSASQGEGCSELIDMALNFLPEGPKLYGEET 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--KKDGSIL--IRQVIYVERP 253 I D P+ + +++ RE++ + +E+P+S V EK EE +K+G + I I VER Sbjct: 183 ICDQPLDNLLSDLVREQVLKNTREEVPHSVAVKIEKREEMKRKNGKVFTAILATIIVERS 242 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +QK I++GK G +K I A+ ++++++ PVHL LFVKV +W Sbjct: 243 TQKGILIGKKGSMLKMIGQSARSNMSKLIDGPVHLELFVKVVPNW 287 >gi|320527305|ref|ZP_08028490.1| GTP-binding protein Era [Solobacterium moorei F0204] gi|320132329|gb|EFW24874.1| GTP-binding protein Era [Solobacterium moorei F0204] Length = 297 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 160/278 (57%), Gaps = 1/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VAL G NAGKSTL+N +G KV+IV+ K QTTRS +RGI +++ QI+F DTPGI Sbjct: 2 RSGFVALAGRPNAGKSTLINSLIGEKVAIVSSKPQTTRSEIRGIYTDENCQIIFTDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M + + I+ D++ LVVD+ +L + + L+LNK+ Sbjct: 62 HKPKFRLESRMNKEAADVIQGVDLIYLVVDASTPYAKGDEFVLNMVKNTGLPVFLVLNKM 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++PE++++ + + + F +SA G +D++ LP +Y A+ SD Sbjct: 122 DKMQPEKIVKVIQQWQERYDFAEYFPLSAKFGRSFEDLIKTTSKYLPEGDLLYPAEMTSD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AE+ REK+ + E+P+++ V+ E E KKD + I+ +I VER SQK IM+ Sbjct: 182 GAENFRIAELIREKILIQTEDEVPHAAAVLIENKEFKKD-KVYIQAMILVERDSQKGIMI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK GQ +K I A+++I ++L + V L LFV+V+ +W Sbjct: 241 GKQGQMLKKIGSLAREDIEKLLGKKVFLELFVRVENEW 278 >gi|255972122|ref|ZP_05422708.1| GTP-binding protein Era [Enterococcus faecalis T1] gi|255963140|gb|EET95616.1| GTP-binding protein Era [Enterococcus faecalis T1] Length = 300 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 170/278 (61%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++GI + E+QIVF+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ +++ ++ D +V + ++ +++ + +S + LI+NKI Sbjct: 66 HKPKHCLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL E +K + ++ +SAT+G+ + +++ L +P P + DQI+D Sbjct: 126 DKVHPDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPDDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ L EIP+S VV + + ++ + ++ I VER SQK I++ Sbjct: 186 HPEYFIVSELIREKVLLLTRDEIPHSVAVVVDSMKRDENDKVHVQATIIVERDSQKGIII 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I +A+++I +L+ V+L L+VKVQKDW Sbjct: 246 GKGGKMLKQIGTKARQDIEYLLDDKVYLELWVKVQKDW 283 >gi|167747959|ref|ZP_02420086.1| hypothetical protein ANACAC_02691 [Anaerostipes caccae DSM 14662] gi|167652609|gb|EDR96738.1| hypothetical protein ANACAC_02691 [Anaerostipes caccae DSM 14662] Length = 301 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N+ +G K++I + K QTTR+ ++ + ++ QIVFLDTPGI Sbjct: 6 KSGFVTLIGRPNVGKSTLMNQLIGQKIAITSKKPQTTRNRIQTVFTDDRGQIVFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ M++++ T+ D++ +V+ + +++++ K + +IL++NK Sbjct: 66 NRAKNKLGDYMLKVAERTLNEVDLILWLVEPTTFIGGGERYIIEQLGKVKTPVILVINKT 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VK E +L+ + + VSA KG DDV + + LP P + D ++D Sbjct: 126 DTVKDEEILKAITTYKDVCEFAEIIPVSALKGQNTDDVTDSIFKYLPEGPMFFDEDTVTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ REK L +EIP+ VV + +E++ G I+ I +I ER S K I+ Sbjct: 186 QPERQICAELIREKALRLLDQEIPHGIAVVIDSMKERRHGHIIDIDAMIVCERDSHKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I +A+ E+ +L+ V+L L+VKV+KDW Sbjct: 246 IGKQGSMLKKIGSQARMEMENLLDIKVNLQLWVKVKKDW 284 >gi|229545169|ref|ZP_04433894.1| GTP-binding protein Era [Enterococcus faecalis TX1322] gi|229309714|gb|EEN75701.1| GTP-binding protein Era [Enterococcus faecalis TX1322] Length = 300 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 170/278 (61%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++GI + E+QIVF+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ +++ ++ D +V + ++ +++ + +S + LI+NKI Sbjct: 66 HKPKHRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL E +K + ++ +SAT+G+ + +++ L +P P + DQI+D Sbjct: 126 DKVHPDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPDDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ L EIP+S VV + + ++ + ++ I VER SQK I++ Sbjct: 186 HPEYFIVSELIREKVLLLTRDEIPHSVAVVVDSMKRDENYKVHVQATIIVERDSQKGIII 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I +A+++I +L+ V+L L+VKVQKDW Sbjct: 246 GKGGKMLKQIGTKARQDIEYLLDDKVYLELWVKVQKDW 283 >gi|255551213|ref|XP_002516653.1| GTP-binding protein erg, putative [Ricinus communis] gi|223544148|gb|EEF45672.1| GTP-binding protein erg, putative [Ricinus communis] Length = 427 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 105/290 (36%), Positives = 165/290 (56%), Gaps = 11/290 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ +S CV +VGA NAGKS L N VG KVS V+ K TT V G++++ ++QI F D Sbjct: 138 EEDQKSLCVGIVGAPNAGKSALTNYMVGTKVSAVSRKTNTTTHEVLGVMTKGDTQICFFD 197 Query: 77 TPGIFNAKDSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS- 131 TPG+ + Y K + +WST+ D++ +V D HR L +++ I + S Sbjct: 198 TPGLMLKSNGYSYKDVKARVENAWSTVNLYDMLMVVFDVHRHLTRPDSRVIRLIERVGSQ 257 Query: 132 -----RLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + IL +NK+D V K + LL+ AE L ++ FM+S KG G D+ YL Sbjct: 258 TNTKQKRILCMNKVDLVEKKKDLLKVAEQFKDLPGYDRCFMISGLKGAGVKDLTQYLIEQ 317 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW + +++ M + + E+ RE+L H+H+EIPY+ W+E +DGS+ I Sbjct: 318 AVKRPWDEDSVHMTEEVMKNISLEVVRERLLDHIHQEIPYNIEHRLIDWKELRDGSLRIE 377 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 Q + + SQ+KI++GKNG I I +EA +E+ I ++ VHLIL V+++ Sbjct: 378 QHLITSKLSQRKILVGKNGSKIGRIGIEANEELRSIFKREVHLILQVRLK 427 >gi|146296963|ref|YP_001180734.1| GTP-binding protein Era [Caldicellulosiruptor saccharolyticus DSM 8903] gi|189037251|sp|A4XKV8|ERA_CALS8 RecName: Full=GTPase Era gi|145410539|gb|ABP67543.1| GTP-binding protein Era [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 300 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 173/284 (60%), Gaps = 4/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N FVG K+SI++ K QTTR+ ++GI++ ++QI+F+DTPG+ Sbjct: 4 KSGFVALIGRPNVGKSTLMNYFVGKKISIISPKPQTTRNSIKGILTLDDAQIIFIDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNK 139 K+ + M+++S T+K D++ +V++ + +L+++ + + IL+LNK Sbjct: 64 HPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDSGIGPWDEAILEKLKEVQTPKILVLNK 123 Query: 140 IDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D E + + ++ + +L F E ++A G+ CD +L + LP P Y D Sbjct: 124 ADLASKENIEILKSLFSGRLSF-EFIIEIAAINGYNCDVLLEKIKKLLPEGPKYYLDDMT 182 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D+ +EI REK+ L+L +E+P+ V E++ E++D IL I IY E+ S K Sbjct: 183 TDVRESFIVSEIIREKILLNLSEEVPHGVGVSVERFSEREDKDILDIEATIYCEKESHKA 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK GQ +K I ++A++E+ + V+L L+VKV+K+W D Sbjct: 243 IIIGKGGQMLKKIGMQAREELEMLFGIKVNLQLWVKVKKNWRDD 286 >gi|291302081|ref|YP_003513359.1| GTP-binding protein Era [Stackebrandtia nassauensis DSM 44728] gi|290571301|gb|ADD44266.1| GTP-binding protein Era [Stackebrandtia nassauensis DSM 44728] Length = 298 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 102/292 (34%), Positives = 165/292 (56%), Gaps = 9/292 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+ R+G VG NAGKSTL N +G+K++I +++ QTTR +VRGI+ +SQ++ +DT Sbjct: 3 DDYRAGFACFVGRPNAGKSTLTNAIIGSKIAITSNRPQTTRHVVRGILHRPDSQLILVDT 62 Query: 78 PGIFNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 PG K+ K + +R +WS + D++ L + ++ ++ + +EI + ++++ Sbjct: 63 PGYHKPKNVLGKRLNEEVRETWSEV---DVIGLCIPANEKIGPGDRYITREITAQKAKVV 119 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++ KID V + +Q N + SA G D +++ L LP +P +Y Sbjct: 120 AVVTKIDLVSKTDVAKQLMAVNDMADFADIVPCSAVSGEQVDVLVDVLSKYLPTSPQLYP 179 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGS-ILIRQVIYVE 251 D I+D P AE+ RE + E+P+S VV E + E+ +DG I IYVE Sbjct: 180 DDMITDEPERVMIAELVREAALEGVRDELPHSIAVVIEDVEIEDLEDGPRTKIYAEIYVE 239 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 R SQK I++GK G ++T+ A+KEIA++L Q V+L L V+V KDW +PK Sbjct: 240 RSSQKAIVIGKAGSRLRTVGTHARKEIAKLLNQRVYLDLHVRVAKDWQTNPK 291 >gi|317472456|ref|ZP_07931779.1| GTP-binding protein Era [Anaerostipes sp. 3_2_56FAA] gi|316900074|gb|EFV22065.1| GTP-binding protein Era [Anaerostipes sp. 3_2_56FAA] Length = 301 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N+ +G K++I + K QTTR+ ++ + +++ QIVFLDTPGI Sbjct: 6 KSGFVTLIGRPNVGKSTLMNQLIGQKIAITSKKPQTTRNRIQTVFTDERGQIVFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ M++++ T+ D++ +V+ + +++++ K + +IL++NK Sbjct: 66 NRAKNKLGDYMLKVAERTLNEVDLILWLVEPTTFIGGGERYIIEQLGKVKTPVILVINKT 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VK E +L+ + + VSA KG DDV + + LP P + D ++D Sbjct: 126 DTVKDEEILKAITTYKDVCEFAEIIPVSALKGQNTDDVTDSIFKYLPEGPMFFDEDTVTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ REK L +EIP+ VV + +E++ G I+ I I ER S K I+ Sbjct: 186 QPERQICAELIREKALRLLDQEIPHGIAVVIDSMKERRHGHIIDIDATIVCERDSHKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I +A+ E+ +L+ V+L L+VKV+KDW Sbjct: 246 IGKQGSMLKKIGSQARMEMENLLDIKVNLQLWVKVKKDW 284 >gi|260886788|ref|ZP_05898051.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185] gi|330839400|ref|YP_004413980.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185] gi|260863387|gb|EEX77887.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185] gi|329747164|gb|AEC00521.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185] Length = 297 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 156/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A+VG N GKSTL+N +G K+ I++ K QTTR+ + I++E ++QIVFLDTPGI Sbjct: 7 RSGFIAVVGRPNVGKSTLINSLIGQKIVIMSDKPQTTRTRILCILTEPDAQIVFLDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + M+R + ST+K D V VVD+ ++ +L+ + IL++NK+ Sbjct: 67 HKPRHTLGEYMVRAAESTLKEVDAVFFVVDATEKMGPGERYILERLQATKCPCILVVNKL 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++ +L E K +SA + D +L + LP P Y D ++D Sbjct: 127 DLIEKPVVLPILESYMKAYPFAGAVPISAKEEVNLDSLLAEVKKYLPEGPAYYPEDMVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK L E+P++ V ++ +E+ G IR IYVER SQK I++ Sbjct: 187 QPERLIVAELVREKALLATRDELPHAMAVDLDEMKERPKGGFYIRATIYVERESQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G ++ I +A+K+I +L V L L+VKV+KDW Sbjct: 247 GAKGALLREIGAQARKDIEMLLGAKVFLDLWVKVKKDW 284 >gi|220932088|ref|YP_002508996.1| GTP-binding protein Era [Halothermothrix orenii H 168] gi|259645948|sp|B8CXI2|ERA_HALOH RecName: Full=GTPase Era gi|219993398|gb|ACL70001.1| GTP-binding protein Era [Halothermothrix orenii H 168] Length = 294 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 161/279 (57%), Gaps = 3/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKSTL+N +G KV I + + QTTR+ VRGI + E QIVF+DTPGI Sbjct: 4 KSGFVSVIGRPNVGKSTLINNLIGQKVVITSPRPQTTRNSVRGIYTRPEGQIVFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A++ M+ ++ +++ D++ +VD + + +I +I+ +NKI Sbjct: 64 HKARNKLDNYMLEKAYESLEDIDVIIFMVDGNYSFGKGDEFIYNQIKGVRVPVIVAMNKI 123 Query: 141 DCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + E ++E Q + F +SA++G D ++ + + LP P Y D ++ Sbjct: 124 DRINKEIVMERQKNYEERTGF--PVIPISASRGTNLDTLVEEIFTFLPEGPQYYPEDMVT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AE+ REK+F+ +E+PY V E+ +E+ + ++ IR IY E+ S KKI+ Sbjct: 182 DQIEQFVVAELIREKVFILTREEVPYGVAVKIEEMKERDNSTMYIRANIYAEKKSHKKII 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G+ IK I A++EI ++L+ V+L L+VK++KDW Sbjct: 242 IGHKGKMIKKIGRLAREEIEKLLQTKVYLDLWVKIEKDW 280 >gi|224097032|ref|XP_002310817.1| predicted protein [Populus trichocarpa] gi|222853720|gb|EEE91267.1| predicted protein [Populus trichocarpa] Length = 414 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 110/306 (35%), Positives = 174/306 (56%), Gaps = 13/306 (4%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ F D N RSG VA+VG N GKSTL N+ +G K+SIVT K QTTR + Sbjct: 100 EIEELAFH----DSSNSNHRSGYVAVVGKPNVGKSTLSNQMIGQKLSIVTDKPQTTRHRI 155 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVN 118 GI S + Q++ DTPG+ K HKL M++ S +AD V ++VD+ R + Sbjct: 156 LGICSAPDYQMILYDTPGVIEKK--MHKLDSMMMKNVRSAAINADCVLVIVDACRAPE-K 212 Query: 119 IHDLLKEIA---KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 I ++L+E K + +L+LNK D +KP + ++ E K +++ VSA G G Sbjct: 213 IDEMLEEGVGNLKDNVPTLLVLNKKDLIKPGEIAKKLEWYEKFTGVDEVIPVSAKFGQGV 272 Query: 176 DDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE 235 +D+ ++ S LP+ P Y D +S+ P F AEI REK+F+ E+PY+ V ++ Sbjct: 273 EDIKEWILSKLPMGPAYYPKDIVSEHPERFFVAEIVREKIFMQFRNEVPYACQVNVVGYK 332 Query: 236 EKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 + I+ I VE+ +QK I++GK G+ +K ++ A+ +I + L++ V+L + VKV+ Sbjct: 333 ARPTAKDFIQVEIVVEKNTQKIIIIGKEGKALKLLATAARLDIEDFLQKKVYLEIEVKVK 392 Query: 296 KDWGHD 301 ++W D Sbjct: 393 ENWRQD 398 >gi|167630513|ref|YP_001681012.1| GTP-binding protein era [Heliobacterium modesticaldum Ice1] gi|226741216|sp|B0TAF1|ERA_HELMI RecName: Full=GTPase Era gi|167593253|gb|ABZ85001.1| GTP-binding protein era [Heliobacterium modesticaldum Ice1] Length = 299 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 164/288 (56%), Gaps = 6/288 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG ++++G N GKSTL+N+ +G KV+I++ K QTTR+ + G+++ + Q +FLDTPGI Sbjct: 5 RSGFISIIGRPNVGKSTLMNQLIGKKVAIMSDKPQTTRNRIVGVLNAPKGQAIFLDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 K ++M+ + T+ D++ VVD+ E I +LK+I + + L++ Sbjct: 65 HKPKHKLGEIMVTTARKTLGEVDLILYVVDASEEPGGGEQFISQMLKDI---KTPVFLVV 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D V E L++ +++V ++ VSA + D + + + + LP P Y A Sbjct: 122 NKMDTVSREEGLKKISQYSQMVAWQELIPVSAKEKTNLDRLKDLIFAKLPEGPLYYPAGS 181 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +D P AE+ REK+ +EIP+S V+ E +E G +++ I+ ER SQK Sbjct: 182 FTDQPERQLMAEMIREKVLHATREEIPHSVAVIIEHLQETPKGGMVVHATIFTERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G +K + +A++EI +L ++L L+VKV+KDW P Sbjct: 242 ILIGKGGSLLKEVGQKARQEIEALLGTSIYLELWVKVKKDWRQRPDVL 289 >gi|256819059|ref|YP_003140338.1| GTP-binding protein Era [Capnocytophaga ochracea DSM 7271] gi|256580642|gb|ACU91777.1| GTP-binding protein Era [Capnocytophaga ochracea DSM 7271] Length = 293 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 106/279 (37%), Positives = 156/279 (55%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIVS + Q+VF DTPGI Sbjct: 3 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + M+ S + ADI+ +V+ +ELK I + ++L++NK Sbjct: 63 IKPSYALQASMMDFVKSAFEDADILIYMVEIGEKELKD--EAFFNRINQLDVPVLLLINK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D L EQ + V + + +SA + + V N + LP +P + DQ++ Sbjct: 121 VDTSDQNVLEEQVAYWKEKVPRAEIYPISALRNFQTEVVFNRIIELLPESPAFFPKDQLT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F EI REK+ LH KEIPYS V TE + + + I IR VI VER SQK I+ Sbjct: 181 DKPERFFVNEIIREKILLHYKKEIPYSVEVETESFAD-SETIIHIRSVIMVERESQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G+ +K + +E + ++ + + +HL LFVKV KDW Sbjct: 240 IGHKGEALKRVGIETRTDLEKFFGKQIHLELFVKVNKDW 278 >gi|317122971|ref|YP_004102974.1| GTP-binding protein Era [Thermaerobacter marianensis DSM 12885] gi|315592951|gb|ADU52247.1| GTP-binding protein Era [Thermaerobacter marianensis DSM 12885] Length = 391 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 164/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VAL+G N GKSTL+N+ +G K++I++ K QTTR+ + G+++ +Q++F+DTPGI Sbjct: 99 RSGFVALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTTRTRILGVLNRPGAQLIFVDTPGI 158 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNK 139 + + M+R++ T++ ++VC +V++ RE + +++ + + IL++NK Sbjct: 159 HKPQHLLGEHMVRVARRTLQEVEVVCWLVEAPDREPGPGDRYIAEQLVEVKTPKILVVNK 218 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P + A+ +L VSA G G +++ L LP P + D I+ Sbjct: 219 IDQVAPGEVPAIAQRFAQLGQFAAVHPVSALHGVGVPELVEELEGRLPQGPRFFPEDMIT 278 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P AE+ RE++ +E+P++ V+ EK E + +G + + IYVER QK+I+ Sbjct: 279 DQPEAQIMAELIREQILHRTREEVPHAVAVLIEKVERRPNGVVYVPATIYVEREGQKRIL 338 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G+ G+ +K I A+ EI +L ++L L+VKV+ DW Sbjct: 339 IGEQGRMLKEIGRLARLEIEALLGSKIYLDLWVKVKPDW 377 >gi|258645786|ref|ZP_05733255.1| GTP-binding protein Era [Dialister invisus DSM 15470] gi|260403157|gb|EEW96704.1| GTP-binding protein Era [Dialister invisus DSM 15470] Length = 300 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 97/277 (35%), Positives = 159/277 (57%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VALVG N GKSTL+N +G KVSIV+ QTTR+ + G+ + K SQ+VFLDTPG+ Sbjct: 8 SGFVALVGRPNVGKSTLMNAVLGEKVSIVSAHAQTTRNKITGVWNGKNSQVVFLDTPGMH 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + +++ + + + D++ + + L +L + + ++L+L+KID Sbjct: 68 KPQSKLGQVIRQSTVDALDEVDVIVFICACNDPLGAGDRYILNLLKDKKVPVVLVLSKID 127 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 +K + LL++ +++ + +SA G + L LP P + D ++D Sbjct: 128 LIKKDMLLKKIGQYSRIHPFSEIIPLSARSGENLKEFTTVLERYLPEGPKYFPDDMVTDQ 187 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P + EI REKL L +E+P++ V TE++ E+++G + IR IYVER SQK+I++G Sbjct: 188 PERNIVQEIVREKLLLRTREEVPHAIGVFTEEFSERENGKVYIRCTIYVERDSQKRIIIG 247 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + G +K EA++EI ++ PV L L+VKV +DW Sbjct: 248 RKGTLLKEAGQEAREEIQNLIGAPVFLDLWVKVSRDW 284 >gi|238019235|ref|ZP_04599661.1| hypothetical protein VEIDISOL_01099 [Veillonella dispar ATCC 17748] gi|237863934|gb|EEP65224.1| hypothetical protein VEIDISOL_01099 [Veillonella dispar ATCC 17748] Length = 299 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 158/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++IV+ K QTTR+ + + +++ QIVF+DTPG+ Sbjct: 8 KSGFVAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMDTPGV 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + ++K + V VV + + + +++++ + + L++NKI Sbjct: 68 HKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +K E LLE +SA ++VLN L TLP P + D I+D Sbjct: 128 DTLKKEELLEAIVSYQDAYPFAGVIPISAKDKENLNEVLNVLEETLPEGPQYFPEDMITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P ++I REK+ L EIP++ V ++ + + DG+ IR IY ER SQK I++ Sbjct: 188 QPERLIISDIVREKILLATRDEIPHAIAVDVDEMKTRDDGTTYIRATIYCERDSQKGIII 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + EA+ +I ++L V+L L+VKV+KDW Sbjct: 248 GKKGALLKQLGAEARVDIQKLLATKVYLDLWVKVKKDW 285 >gi|325299809|ref|YP_004259726.1| GTP-binding protein Era-like-protein [Bacteroides salanitronis DSM 18170] gi|324319362|gb|ADY37253.1| GTP-binding protein Era-like-protein [Bacteroides salanitronis DSM 18170] Length = 293 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG +VSI T K QTTR + GI++ + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNLLVGERVSIATFKAQTTRHRIMGILNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D+ + N + ++++ ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSESALVDADVLLYVTDTIEKPDKN-KEFVEKVRNLDIPVLLLVNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L++ E + L+ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLTNQDNLVKLVEEWHGLLPDAEIIPISAKAKFNVDAVMKRITELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E+ SI I VIYVER SQK I++ Sbjct: 182 KPARFFVTEIIREKILLYYDKEIPYSVEVVVEQFKEEA-KSIHIHAVIYVERESQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G+ +K ++ EA+K + ++ ++L FVKV KDW Sbjct: 241 GHQGKALKKVATEARKALERFFQKSIYLETFVKVDKDW 278 >gi|313888957|ref|ZP_07822617.1| ribosome biogenesis GTPase Era [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845130|gb|EFR32531.1| ribosome biogenesis GTPase Era [Peptoniphilus harei ACS-146-V-Sch2b] Length = 301 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 173/288 (60%), Gaps = 5/288 (1%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 ++N +SG V+++G N GKSTL+N +G K+S ++ K QTTR + I +++++QI+F Sbjct: 1 MTENNFKSGYVSVIGRPNVGKSTLLNAIIGEKISAISSKPQTTRQNITFIHTDEDAQIIF 60 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSS 131 LDTPGI K+ + M+ S I+ +D++ +VD+ +++ + +I D+LKE K Sbjct: 61 LDTPGIQKPKNKLGEFMLTESKEGIEDSDVITYIVDTSKKIGRAERSIIDILKE-YKGKL 119 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +IL++NK+D ++ + LLE + + + +SA K G D L L L P Sbjct: 120 PIILLINKVDTIRKDELLEIISMYAEEEIFDDIIPISAMKNDGVDIYLETLKKFLKPGPM 179 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYV 250 Y D I+D AEI REK ++L++E+P+ + EK+++++D ++ I IYV Sbjct: 180 YYPEDMITDKNERFIVAEIIREKGLIYLNEEVPHGLAISIEKFKKREDKNMYDIDANIYV 239 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ER + K I++GKNG +K I EA++E +L+ V+L ++VKV+K+W Sbjct: 240 ERDTHKGILIGKNGSMLKRIGTEAREEAERLLDAKVNLQIWVKVEKNW 287 >gi|149277443|ref|ZP_01883584.1| GTP-binding protein [Pedobacter sp. BAL39] gi|149231676|gb|EDM37054.1| GTP-binding protein [Pedobacter sp. BAL39] Length = 292 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 102/278 (36%), Positives = 163/278 (58%), Gaps = 3/278 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V+++G N GKSTL+N +G K+SI+T K QTTR + GIV+E+E QIVF DTPGI Sbjct: 4 KAGFVSIIGKPNVGKSTLMNALIGEKLSIITPKAQTTRHRILGIVNEEEYQIVFSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ + AD++ V D + + N D+L++I + +I+++NKI Sbjct: 64 IKPKYGLQDSMMTSVKGALTDADLILFVTDINEQHDEN--DVLEKIIDTTIPMIVLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E++ + + + F +SA + + +++ + LP P Y + ++D Sbjct: 122 DNATQEQVEEKSAFWQEKLNPKYIFAISALHQYNLEGIMDRVLDFLPEHPAYYDKEDLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 F +EI REK+F + KEIPYS+ VV ++E ++ + I I VER SQK I++ Sbjct: 182 RNQRFFVSEIIREKIFNNYQKEIPYSTEVVITAFKE-EEKLVRISAEIIVERDSQKNILI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + +EA+K+I + L+Q V L FVKV DW Sbjct: 241 GKGGSMLKKVGMEARKDIEKFLDQKVFLETFVKVLPDW 278 >gi|21673128|ref|NP_661193.1| GTP-binding protein Era [Chlorobium tepidum TLS] gi|21646203|gb|AAM71535.1| GTP-binding protein, Era/ThdF family [Chlorobium tepidum TLS] Length = 305 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 111/286 (38%), Positives = 170/286 (59%), Gaps = 11/286 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G V VGA NAGKSTL+NR + K+SIVT K QTTR + GI + SQI+ LDTPGI + Sbjct: 9 GHVTFVGAPNAGKSTLLNRLLDHKLSIVTPKPQTTRKKITGIYHDDRSQIIILDTPGIMD 68 Query: 83 AKDSYHKLMIRLSWSTIKHAD-IVCLVVDSHRELKVN---IHDLLKEIAKRSSR-LILIL 137 K S H+ M+ ++ +++ +D IV L+ + ++ +L+++ K + + ++ L Sbjct: 69 PKQSLHESMLEITRRSLRESDVIVALIPFQKGDEPIDRKFASELIEQWVKPTGKPFVIAL 128 Query: 138 NKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D V E E Q EI +K + T +SA G +++ L LP ++ D Sbjct: 129 NKADLVPEETAKEAQTEIISKYKPV-ATLALSALTGGNIPELVELLRPLLPFDEPIWPDD 187 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LIRQVIYVER 252 +S P F EI REK+FL +EIPYS+ VV ++++E+ + + LIR + VER Sbjct: 188 ILSTEPERFFVGEIIREKIFLQYGREIPYSTEVVIDEFKEQHENNPSRKELIRCSVIVER 247 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK+I++G+ G IK + A+KEI E+L++PV+L +FVKV+ DW Sbjct: 248 NSQKQIIVGQKGAAIKKLGQAARKEIEELLDRPVYLEIFVKVRPDW 293 >gi|311069130|ref|YP_003974053.1| GTP-binding protein Era [Bacillus atrophaeus 1942] gi|310869647|gb|ADP33122.1| GTP-binding protein Era [Bacillus atrophaeus 1942] Length = 301 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+++ SQ +F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T+K D++ ++++ +++++ S+ + LI+NKI Sbjct: 67 HKPKHKLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQHTSTPVFLIVNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P++LL + ++ +SA +G+ + +L + + LP P Y +DQ++D Sbjct: 127 DQIHPDKLLLLIDEYRVRYPFKEIVPISALEGNNIETLLTQVEAYLPEGPQFYPSDQVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +EIP+S V E + +++GS+ + I VER SQK I++ Sbjct: 187 HPERFIISELIREKVLHLTREEIPHSIAVSIESIKARENGSVHVAATIVVERDSQKGIVI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + A+ +I +L V+L L+VKVQKDW Sbjct: 247 GKQGSLLKEVGKRARTDIEALLGSRVYLELWVKVQKDW 284 >gi|149371535|ref|ZP_01890951.1| putative GTP-binding protein [unidentified eubacterium SCB49] gi|149355162|gb|EDM43722.1| putative GTP-binding protein [unidentified eubacterium SCB49] Length = 293 Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 104/284 (36%), Positives = 163/284 (57%), Gaps = 14/284 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG ++SI+T K QTTR + GIV+ ++ Q++ DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMLLSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ S + AD++ +V+ ++LK +I ++L+LNK Sbjct: 64 IKPAYELQASMMDFVKSAFEDADVLLYLVELGEKDLKD--EKFFDKITNAKIPVLLLLNK 121 Query: 140 IDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ID E+L E QA++ N VF +SA + G +V N++ LP +P Y Sbjct: 122 IDQGNEEQLGEALTFWQAKVPNATVF-----AISALENFGVQEVFNHIIELLPESPPFYP 176 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 DQ++D P F EI REK+ +H KEIPYS + TE++ E ++ I IR +I VER + Sbjct: 177 KDQLTDKPERFFVNEIIREKILMHYKKEIPYSVEIDTEEFFEDEN-IIRIRSIIMVERNT 235 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++G G +K + +EA+K++ + + +HL +VKV K+W Sbjct: 236 QKGIIIGHKGAALKRVGVEARKDLEKFFGKQIHLETYVKVNKNW 279 >gi|160878804|ref|YP_001557772.1| GTP-binding protein Era [Clostridium phytofermentans ISDg] gi|160427470|gb|ABX41033.1| GTP-binding protein Era [Clostridium phytofermentans ISDg] Length = 305 Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 162/286 (56%), Gaps = 1/286 (0%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 ++ + +SG L+G N GKSTL+N+ +G K++I + K QTTR+ ++ + +E++ QI+ Sbjct: 2 NYQEKKYKSGFATLIGRPNVGKSTLMNQLIGQKIAITSDKPQTTRNRIQTVYTEEQGQII 61 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 FLDTPGI AK+ + M+ ++ TI D++ +V+ + +++++ K + + Sbjct: 62 FLDTPGIHQAKNKLGQFMVNIAERTINEVDVILWLVEPSTFIGAGEQHIIEKLNKSKTPV 121 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 IL++NKID VK + +L + + VSA KG +++ + LP P + Sbjct: 122 ILVINKIDTVKKQEILTFIDAYRDKCNFAEIVPVSALKGENKQQLIDVIFKYLPNGPMYF 181 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 D ++D P AE+ REK L EIP+ V E+ +E+ DG ++ I I ER Sbjct: 182 DEDTVTDQPERQIVAELIREKALRLLSDEIPHGIAVTIERMKERPDGKVIDIDATIICER 241 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GK G +K I ++A+ EI +L+ V L L+VKV+K+W Sbjct: 242 DSHKGIIIGKQGAMLKNIGMKARVEIENLLDTKVFLQLWVKVKKEW 287 >gi|145356544|ref|XP_001422488.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582731|gb|ABP00805.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 351 Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 167/292 (57%), Gaps = 12/292 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A+VG NAGKSTL+N VG K+SIVT+K QTTR + GI+S++ SQ+V LDTPG+ Sbjct: 49 KSGYAAIVGRPNAGKSTLMNDLVGTKLSIVTYKPQTTRHRILGILSDENSQMVLLDTPGV 108 Query: 81 ----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 FN D +M++ +++ +AD++ +VD+ R+ L + KR LI Sbjct: 109 MVEEFNKLDG---MMLKSVRNSMANADVLFYIVDAARDPYGAWEGLAPKKGKRVP-TALI 164 Query: 137 LNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 LNK D V ER++E E I++ +SA G +V + LPL P +Y Sbjct: 165 LNKCDMVGDRERIMELIEYFQAQEAIDEVLPISALNSTGTRNVKEWALERLPLGPTLYPK 224 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG--SILIRQVIYVERP 253 D IS+ P F AEI REK+FL +E+PYS+ V E +E +DG LI ++VER Sbjct: 225 DAISEHPERFFIAEIIREKIFLQYKQEVPYSTQVWIETHKE-RDGVKKDLILAKVFVERQ 283 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 SQ I++G+ G +K +S A+ +I + L +PV L + VKV+ W D + Sbjct: 284 SQIGIIVGQGGAAMKKLSSSARADIEKFLGRPVFLDIQVKVRDGWREDDRSL 335 >gi|291546834|emb|CBL19942.1| GTP-binding protein Era [Ruminococcus sp. SR1/5] Length = 302 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 102/285 (35%), Positives = 159/285 (55%), Gaps = 2/285 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + +N RSG VA++G N GKSTL+N +G K++I ++K QTTR+ ++ + + E QIVFL Sbjct: 1 MDNNFRSGFVAIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNKIQTVYTCDEGQIVFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M++++ T+K D + +V+ + + +++ K +IL Sbjct: 61 DTPGIHKAKNKLGEYMVQVAERTLKEVDAIMWLVEPSTFVGAGERHIAEQLQKVGVPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 I+NKID VK E LL + K+ + SA +G D++ + LP P Y Sbjct: 121 IINKIDTVKKEELLPAIDTYRKICDFAEIIPCSALRGKNTQDIIPSIFKYLPYGPMFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS--ILIRQVIYVERP 253 D ++D P AEI REK L +EIP+ V ++ +++ S I I I ER Sbjct: 181 DTVTDQPQRQIAAEIIREKALHALDEEIPHGIAVAIDRMKKRPGRSNIIDIDATIICERN 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GK G +K I A+ E+ +LE V+L L+VKV K+W Sbjct: 241 SHKGIIIGKQGAMLKKIGSNARYELERMLEAKVNLKLWVKVTKNW 285 >gi|332876945|ref|ZP_08444698.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685053|gb|EGJ57897.1| ribosome biogenesis GTPase Era [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 293 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 105/279 (37%), Positives = 159/279 (56%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIVS + Q+VF DTPGI Sbjct: 3 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M+ ADI+ +V+ E + I K + ++L++NKI Sbjct: 63 IKPAYALQESMMAFVKDAFDDADILIYMVEIG-EKGLKEEAFFDRINKLNIPILLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + + L EQ + V + + +SA + +V + + + LP +P + DQ++D Sbjct: 122 DTSEQQVLEEQVAYWKEQVPRAEVYPISALRNFQTKEVFDRILALLPESPAFFPKDQLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P F EI REK+ LH KE+PYS V TE + + + +IL IR VI VER SQK I+ Sbjct: 182 KPERFFVNEIIREKILLHYKKEVPYSVEVTTESFADSE--TILHIRSVIMVERESQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G+ +K + + A+ ++ + + VHL LFVKV KDW Sbjct: 240 IGHKGEALKRVGVAARADLEKFFGKQVHLELFVKVNKDW 278 >gi|150390776|ref|YP_001320825.1| GTP-binding protein Era [Alkaliphilus metalliredigens QYMF] gi|189037249|sp|A6TSJ8|ERA_ALKMQ RecName: Full=GTPase Era gi|149950638|gb|ABR49166.1| GTP-binding protein Era [Alkaliphilus metalliredigens QYMF] Length = 295 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 166/279 (59%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N+ +G K++I++ K QTTR+ ++ + S+++ QIVFLDTPGI Sbjct: 4 KSGFVTIIGRPNVGKSTLMNQIIGEKIAIMSDKPQTTRNKIQSVYSQEDFQIVFLDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++++ T+K D+V +VD +++ +++++ + + LI+NKI Sbjct: 64 HKPKHKLGEYMVKVARDTLKEVDVVLFLVDEGQKIGPGDRFIMEQLKDIKTPMFLIINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E L E + + ++ +SA +G D ++ + S LP P + +D I+D Sbjct: 124 DKMNQEILNEVCGLFEETGLFQRIIPISALEGANIDTLIKQIVSFLPEGPQYFPSDMITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AEI REKL +L +EIP+ V T +++ + I+ I+ IY E+ S K I+ Sbjct: 184 QPERLLVAEIVREKLLHYLDQEIPHGIAVETSMMKQRPNQDIVDIQATIYCEKKSHKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G+ +K + A+++I ++L V L L+VKV +DW Sbjct: 244 IGKGGRKLKGVGKSARQDIEKLLGSKVFLELWVKVNEDW 282 >gi|160895175|ref|ZP_02075948.1| hypothetical protein CLOL250_02735 [Clostridium sp. L2-50] gi|156863209|gb|EDO56640.1| hypothetical protein CLOL250_02735 [Clostridium sp. L2-50] Length = 301 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 162/284 (57%), Gaps = 1/284 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + D +SG VA++G N GKSTL+N+ +G K++I + K QTTR+ ++ + + E QIVFL Sbjct: 1 MNDTYKSGFVAIIGRPNVGKSTLMNQLIGQKIAITSSKAQTTRNRIQTVYTSDEGQIVFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M++++ T+ D+V +V++ + +++++ + + +I+ Sbjct: 61 DTPGINRAKNKLGEYMLKVAEGTLNEVDVVMWIVEATTFIGAGERYIIEQLERVKTPIII 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID V E + + + VSA KG D+++ L LP P Y Sbjct: 121 VVNKIDAVSEEEVFKAISTYKDACSHAEIVPVSALKGKNKDELIKTLFKYLPYGPQFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 D I+D P +E+ RE+ L KEIP+ VV + +E+ +G ++ I I ER S Sbjct: 181 DTITDQPERQIVSELIREQALRLLDKEIPHGIAVVIDSMKERPNGRLMDIDATIICERDS 240 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ I ++L+ V+L L+VKV+KDW Sbjct: 241 HKGIIIGKQGAMLKKIGSNARYGIEQLLDTHVNLKLWVKVKKDW 284 >gi|198274288|ref|ZP_03206820.1| hypothetical protein BACPLE_00430 [Bacteroides plebeius DSM 17135] gi|198272778|gb|EDY97047.1| hypothetical protein BACPLE_00430 [Bacteroides plebeius DSM 17135] Length = 293 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 161/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI++ ++ QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNLLVGERISIATFKAQTTRHRIMGILNTEDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D+ + N + ++++ ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSESALVDADVLLYVTDTVEKPDKN-AEFMEKVRNLKVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E L++ + ++++ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLTNQEDLVKLVDEWHEMLPEAEIIPISAMAKFNVDVVMKRIKELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E + SI I VIYVER SQK I++ Sbjct: 182 KPARFFVTEIIREKILLYYDKEIPYSVEVVVEQFKE-DEKSIHINAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G+ G+ +K ++ EA+K + + ++L FVKV KDW Sbjct: 241 GRQGKALKKVATEARKTLEHFFRKSIYLETFVKVDKDW 278 >gi|146299638|ref|YP_001194229.1| GTP-binding protein Era [Flavobacterium johnsoniae UW101] gi|146154056|gb|ABQ04910.1| GTP-binding protein Era [Flavobacterium johnsoniae UW101] Length = 295 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/283 (36%), Positives = 160/283 (56%), Gaps = 2/283 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +Q + ++G V ++G N GKSTL+N FVG ++SI+T K QTTR + GIV+ ++ QIV Sbjct: 1 MQMSHKAGFVNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQIVLS 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI + M+ S + ADI+ +V+ E + D K+I ++L Sbjct: 61 DTPGIIKPAYEMQESMMNFVKSAFEDADILVYMVEIG-EQNLKDEDFFKKIFYAKIPVLL 119 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +LNKID E+L EQ + V + F +SA + +V + LP +P Y Sbjct: 120 LLNKIDNSNQEQLEEQVAFWKEKVPNAEIFPISALQNFNVPEVFERIIQLLPESPAYYPK 179 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ++D P F E REK+ L+ KEIPY+ +VTE++ E D I IR VI VER +Q Sbjct: 180 DQLTDKPERFFVNETIREKILLNYAKEIPYAVEIVTEEFHE-TDTIIRIRSVIMVERDTQ 238 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G G +K + +A+ ++ + + +H+ L+VKV K+W Sbjct: 239 KGIIIGHKGAALKKVGTDARVDLEKFFGKQIHIELYVKVNKNW 281 >gi|326797796|ref|YP_004315615.1| GTP-binding protein Era-like-protein [Sphingobacterium sp. 21] gi|326548560|gb|ADZ76945.1| GTP-binding protein Era-like-protein [Sphingobacterium sp. 21] Length = 292 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 161/278 (57%), Gaps = 3/278 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V++VG NAGKSTL+N VG K+SIVT K QTTR + GIV+E++ QIVF DTPG+ Sbjct: 4 KAGFVSIVGKPNAGKSTLMNSLVGEKMSIVTPKAQTTRHRILGIVNEEDYQIVFSDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 S + M+ ++ ADI+ V D + K + D+++++ K S +++++NKI Sbjct: 64 IKPAYSLQESMMNFVHGSLVDADIILFVTDINE--KYDETDVIEKLQKTDSPVVVLVNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + + + + + F +SA GH V ++ LP+ P Y D+++D Sbjct: 122 DKSNEDDVKAKINYWQETLDPTAIFAISALLGHNIQAVFQFVLEHLPVHPPFYEKDELTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 F +E+ REK+F KEIPYS+ V+ ++E++ + I I VER SQK I++ Sbjct: 182 KSERFFVSEMVREKIFKLYEKEIPYSTEVIVTSFKEEEQ-LVRISAEIIVERDSQKNIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G IK + A+++I E L++ V L LFVKV DW Sbjct: 241 GTGGSMIKKVGTYARQDIEEFLQKKVFLELFVKVISDW 278 >gi|260589683|ref|ZP_05855596.1| GTP-binding protein Era [Blautia hansenii DSM 20583] gi|331083115|ref|ZP_08332232.1| GTP-binding protein Era [Lachnospiraceae bacterium 6_1_63FAA] gi|260539923|gb|EEX20492.1| GTP-binding protein Era [Blautia hansenii DSM 20583] gi|330405117|gb|EGG84654.1| GTP-binding protein Era [Lachnospiraceae bacterium 6_1_63FAA] Length = 301 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 155/279 (55%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+N +G K++I + K QTTR+ ++ + + ++ QIVFLDTPGI Sbjct: 6 KSGFVAIIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNKIQTVYTGEKGQIVFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ ++ T K AD++ +V+ + + +++ +IL++NK+ Sbjct: 66 HKAKNKLGEYMVNVAQRTFKDADVILWLVEPTSYIGAGERHIAEQLKNCKLPVILVINKV 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VK + + KL SA + D VL+ + LP P Y D I+D Sbjct: 126 DTVKKSEIAGFIDGYRKLYNFSDIVPASALRAQNLDTVLDCIFKYLPYGPMFYDEDTITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ REK L +EIP+ V ++ +E+ D ++ I I ER S K I+ Sbjct: 186 QPQRQIVAEMIREKALRTLDEEIPHGIAVTIDQMKERTDKDLVDIDATIICERDSHKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+ EI LE+PV+L L+VKV+KDW Sbjct: 246 IGKQGAMLKKIGSAARYEIEHFLEKPVNLKLWVKVKKDW 284 >gi|239827759|ref|YP_002950383.1| GTP-binding protein Era [Geobacillus sp. WCH70] gi|239808052|gb|ACS25117.1| GTP-binding protein Era [Geobacillus sp. WCH70] Length = 302 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 165/283 (58%), Gaps = 1/283 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ +SG V++VG N GKST +NR +G K++I++ K QTTR+ ++G+ + ++QI+F+D Sbjct: 3 KEGYKSGFVSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFID 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ K M++++ + ++ D++ ++++ +++++ ++ + L+ Sbjct: 63 TPGMHKPKHKLGDFMMKVALNALREVDLILFMINAEEGFGRGDAFIIEQLKAVNTPVFLV 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V P+ LL + L + +SA +G+ + ++ + LP P Y D Sbjct: 123 INKIDKVHPDDLLPLIDQYKDLYPFAEIIPISALQGNNIETLVEQIKKYLPEGPQYYPPD 182 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG-SILIRQVIYVERPSQ 255 QI+D P AE+ REK +E+P+S VV E E ++D ++ + VI VER SQ Sbjct: 183 QITDHPERFIIAELIREKALHLTREEVPHSIAVVVETIERREDSDTVYVGAVIIVERDSQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G+ +K I A+ +I +L V L L+VKVQKDW Sbjct: 243 KGIIIGKQGRMLKEIGQRARMDIEALLGSKVFLELWVKVQKDW 285 >gi|295399214|ref|ZP_06809196.1| GTP-binding protein Era [Geobacillus thermoglucosidasius C56-YS93] gi|312110184|ref|YP_003988500.1| GTP-binding protein Era [Geobacillus sp. Y4.1MC1] gi|294978680|gb|EFG54276.1| GTP-binding protein Era [Geobacillus thermoglucosidasius C56-YS93] gi|311215285|gb|ADP73889.1| GTP-binding protein Era [Geobacillus sp. Y4.1MC1] Length = 302 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 165/283 (58%), Gaps = 1/283 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ +SG V++VG N GKST +NR +G K++I++ K QTTR+ ++G+ + ++QI+F+D Sbjct: 3 KEGYKSGFVSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFID 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ K M++++ + +K D++ ++++ +++ + + ++ + L+ Sbjct: 63 TPGMHKPKHKLGDFMMKVALNALKEVDLILFMINAEEGFGRGDAYIIERLKEVNTPVFLV 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID V P LL + +L + +SA +G+ + ++ + LP P Y D Sbjct: 123 INKIDLVHPNDLLPLIDRYKELYPFAEIIPISALQGNNIETLVEQIKKYLPEGPQYYPPD 182 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG-SILIRQVIYVERPSQ 255 Q++D P AE+ REK +E+P+S VV E E ++D ++ + VI VER SQ Sbjct: 183 QVTDHPERFIIAELIREKALHLTREEVPHSIAVVVETIERREDSDTVYVGAVIIVERDSQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G+ +K I A+ +I +L V L L+VKVQKDW Sbjct: 243 KGIIIGKQGRMLKEIGQRARVDIEALLGSRVFLELWVKVQKDW 285 >gi|257065848|ref|YP_003152104.1| GTP-binding protein Era [Anaerococcus prevotii DSM 20548] gi|256797728|gb|ACV28383.1| GTP-binding protein Era [Anaerococcus prevotii DSM 20548] Length = 293 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 166/288 (57%), Gaps = 2/288 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+ + +G K+SI+++K QTTR ++ I +++ESQI+FLDTPGI Sbjct: 3 KSGFVSVVGRANVGKSTLMEKIIGEKISIISNKPQTTRDKIQIIYNDEESQIIFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ + ++ S ++K +DI+ +VVD E+ ++L+ + K IL++NK Sbjct: 63 QTPRNKLQERLLTFSEESLKESDIITMVVDDSEEIGRIDGEILEMLEKIKLPKILLINKT 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E F ++ +SA +G D ++ + L P Y D I+D Sbjct: 123 DLADREKIAHIRENFRACDF-DRIIEISALEGENIDVFIDTIKEMLDFGPAYYDRDMITD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 EI REK +L E+P+ V + ++E+ + ++ IR I VE+ S K+I+ Sbjct: 182 KTERFIVGEIIREKALRNLSNEVPHGVAVRIDDFKERSNKKLIDIRATIVVEKNSHKEIV 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GKNGQ IK I ++A+KEI + L V+L L+VKV+KDW K + Sbjct: 242 IGKNGQMIKRIGMDARKEIEKFLSSKVNLQLWVKVEKDWRKKEKLVDR 289 >gi|304382195|ref|ZP_07364703.1| GTP-binding protein Era [Prevotella marshii DSM 16973] gi|304336660|gb|EFM02888.1| GTP-binding protein Era [Prevotella marshii DSM 16973] Length = 303 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N+ VG ++SI T K QTTR + GIV+ + QIVF DTPG+ Sbjct: 13 KAGFVNIVGNPNVGKSTLMNQLVGERISIATFKAQTTRHRIMGIVNTDDMQIVFSDTPGV 72 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M S S + AD++ V D + + N+ D L+++ K S+ ++L++NKI Sbjct: 73 LQPNYKLQESMRAFSESALTDADVLLYVTDVVEKPEKNM-DFLQKVQKISTPVLLLINKI 131 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L E ++L+ + +SA G D +L + LP AP + +Q +D Sbjct: 132 DRSDQQTLGNIVERWHELLPNAEILPISAKNQFGIDILLKRIKDLLPDAPPYFGKEQWTD 191 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F +EI REK+ L+ KEIPYS V E ++E I+I VIYVER SQK I++ Sbjct: 192 KPARFFVSEIIREKILLYYDKEIPYSVEVRVESFKEDAQ-KIVIHVVIYVERDSQKGIII 250 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K +S EA+K + + ++L +VKV KDW Sbjct: 251 GHQGIALKKVSTEARKALERFFGKSIYLETYVKVDKDW 288 >gi|294618704|ref|ZP_06698237.1| GTP-binding protein Era [Enterococcus faecium E1679] gi|291595047|gb|EFF26391.1| GTP-binding protein Era [Enterococcus faecium E1679] Length = 299 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++G+ + E+Q++F+DTPGI Sbjct: 5 KSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ ++S +K D V ++ + ++ +++ + S + LI+NKI Sbjct: 65 HKPKHRLGDFMVEAAYSALKEVDAVLFIISADQKRGRGDDFIIERLKNVHSPVYLIINKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ LL E + + + +SAT+G+ + +++ L S +P P + DQ++D Sbjct: 125 DKIHPDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ E+P+S VV + + ++ I I+ I VER SQK I++ Sbjct: 185 HPEYFIVSELIREKVLFLTRDEVPHSVAVVVDSMKRNENDKIHIQATIIVERDSQKGIII 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + +A+K+I +L V L L+VKVQKDW Sbjct: 245 GKGGKMLKQVGTKARKDIENLLGDKVFLELWVKVQKDW 282 >gi|332975861|gb|EGK12739.1| GTP-binding protein Era [Desmospora sp. 8437] Length = 300 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 163/278 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N+ +G KV+I++ K QTTR+ +RG+ + + QI+FLDTPGI Sbjct: 7 KSGFVTLIGRPNVGKSTLLNQVLGQKVAIMSDKPQTTRNKIRGVYTTEAEQIIFLDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++ + T + D++ +VD+ + +++++ + + L++NKI Sbjct: 67 HKPKSRLGDWMVQTARETFEEVDVILFLVDAKEGMGPGDRFIMEQLKAVKTPVFLVVNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL + K ++ VSA G+ +L+ + LP P Y ++ ++D Sbjct: 127 DQVHPDTLLPLIDRYRKTFSFKEVVPVSALYGNNTTTLLDLIRRELPEGPAYYPSEYVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P E+ REK+ +E+P+S VV E+ +E+++G + +R IY ER SQK I++ Sbjct: 187 HPERFIIGELVREKVLHLTREEVPHSVAVVVEEMKEEEEGRVFVRATIYTERQSQKGILI 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + A++EI +L V+L L+VKV+KDW Sbjct: 247 GKQGSMLKEVGRRAREEIQRLLGSRVYLDLWVKVKKDW 284 >gi|298206898|ref|YP_003715077.1| putative GTP-binding protein [Croceibacter atlanticus HTCC2559] gi|83849532|gb|EAP87400.1| putative GTP-binding protein [Croceibacter atlanticus HTCC2559] Length = 294 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 163/278 (58%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIV+ ++ QIV DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGEDFQIVLSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S + AD++ +V+ E + K+I ++L+LNKI Sbjct: 64 IKPAYQLQENMMDFVKSAFEDADVLIYMVEIG-EQSLKDEAFFKKITNAEIPVLLLLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +L EQ + + V + + +SA +G +VLN + +P +P Y DQ++D Sbjct: 123 DTSDQHQLEEQMQYWKEKVPTAEIYPISALEGFNVSEVLNRIIEVMPESPAFYPKDQLTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ +H KEIPYS V TE++ E+++ I +R +I VER SQK I++ Sbjct: 183 KPERFFVNEIIREKILMHYKKEIPYSVEVDTEEFFEEEE-IIKMRSIIMVERDSQKGIII 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K + +EA+K++ + + VH+ L+VKV K+W Sbjct: 242 GHKGSALKRVGVEARKDLEKFFGKQVHIELYVKVNKNW 279 >gi|20807454|ref|NP_622625.1| GTPase [Thermoanaerobacter tengcongensis MB4] gi|25008432|sp|Q8RB50|ERA_THETN RecName: Full=GTPase Era gi|20515979|gb|AAM24229.1| GTPases [Thermoanaerobacter tengcongensis MB4] Length = 298 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 162/286 (56%), Gaps = 1/286 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VAL+G TN GKSTL+N + KV+I + K QTTR+ +RGI++ ++ QI+F+DTPGI Sbjct: 4 RAGFVALIGRTNVGKSTLLNAILKEKVAITSPKPQTTRNTIRGILTTEDYQIIFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + MI ++ T+K D++ +V+ + +L + + + +IL++NKI Sbjct: 64 HKPKSKLSEFMIEVAKRTLKDVDLILYMVEPDTSIGPGDRYILDNLKEVDTPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V ER+ E ++ + +SA+ G + + + S LP P Y D I+D Sbjct: 124 DLVPAERVEEAIKVFKSEYNFKDVVAISASLGTNVEVLKEKIVSFLPEGPRYYLDDYITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AEI REK+ L +E+P+ V E +E++D I+ I IY E+ S K I+ Sbjct: 184 QPEKLIVAEIIREKMLYFLEEEVPHGVYVEVESIKEREDKEIVDIDAYIYCEKESHKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +GKNGQ +K I A++++ E + V L L+VKV+K W + K Sbjct: 244 IGKNGQMLKKIGQAARQDLEEFYGKQVFLQLWVKVRKGWRDNEKLL 289 >gi|302871791|ref|YP_003840427.1| GTP-binding protein Era [Caldicellulosiruptor obsidiansis OB47] gi|302574650|gb|ADL42441.1| GTP-binding protein Era [Caldicellulosiruptor obsidiansis OB47] Length = 300 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 174/284 (61%), Gaps = 4/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N VG K+SI++ K QTTR+ ++GI++ +++QI+F+DTPG+ Sbjct: 4 KSGFVALIGRPNVGKSTLLNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNK 139 K+ + M+++S T+K D++ +V++ + +++++ + IL+LNK Sbjct: 64 HPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKDVETPKILVLNK 123 Query: 140 IDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D E + + ++ + KL F E ++A G+ CD +L+ + LP P Y D Sbjct: 124 SDLASKENVEMLKSIFSTKLNF-EFIVDIAAINGYNCDLLLSRIKELLPEGPKYYLDDMT 182 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D+ AEI REK+ L+L +E+P+ + E++ E+++ IL I +IY E+ S K Sbjct: 183 TDVRESFIVAEIIREKILLNLSEEVPHGVGIAIERFAERENKDILDIEAIIYCEKDSHKA 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK GQ +K I ++A++E+ I V+L L+VKV+K+W D Sbjct: 243 IIIGKGGQMLKKIGMQAREELEMIFGMKVNLQLWVKVKKNWRDD 286 >gi|297171214|gb|ADI22222.1| GTPase [uncultured Gemmatimonadales bacterium HF0200_34B24] gi|297171330|gb|ADI22335.1| GTPase [uncultured actinobacterium HF0500_01C15] Length = 309 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 108/287 (37%), Positives = 157/287 (54%), Gaps = 3/287 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q +R+G VALVG NAGKSTL+NRFVG +SIVT K QTT V GI ++ Q++FLD Sbjct: 8 QSTTRAGYVALVGRPNAGKSTLLNRFVGEHLSIVTSKAQTTWQRVTGIRTKGTDQLIFLD 67 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ +D M+ + + AD+ LVVD + R + + +L ++ L + Sbjct: 68 TPGLLETRDLLQHAMLGAALEALAEADVALLVVDTTRRPTQTDTDRILAAFSEIHRPLHI 127 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +LNK+D +E + ++ + VSA G G D +LN +C LP P++Y Sbjct: 128 VLNKLDQANLSS-IEAWKSWSEEGLSGQVHSVSAKTGKGVDSLLNVICEDLPEGPFLYPE 186 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+ P+ F AE RE +F H+EIPY+ ++ EK+D + I I+VER SQ Sbjct: 187 DDIASDPVRFFVAEFVREAIFEQFHQEIPYAVFCQVAEFREKQDPT-YIHVDIFVERKSQ 245 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 K+IM+G G IK + A+ +I L V+L L+VK W P Sbjct: 246 KRIMVGHQGSAIKKLGSAARSKIERFLGCHVYLDLWVKPLPSWRKSP 292 >gi|254527127|ref|ZP_05139179.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9202] gi|221538551|gb|EEE41004.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9202] Length = 303 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 166/285 (58%), Gaps = 5/285 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG V L+G N GKSTL+N+ +G K++I + QTTR+ ++GI++ + QI+F+DTP Sbjct: 3 NYRSGFVTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTENGQIIFVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ +++++ + S I D+V V+DS +L + ++ I++LN Sbjct: 63 GVHKPHHRLGEILVKNAKSAINGVDMVIFVIDSSEAPGKGDEYILNFLIDNKTKFIVVLN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V E + + + + + F VSA++G GC ++++ + + LP P +Y + Sbjct: 123 KWDLVNKEFRNFRLDQYRRFFGMNRNFQSVSASQGQGCSELVDMVLNFLPEGPKLYGEET 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--KKDGSIL--IRQVIYVERP 253 I D P+ + +++ RE++ + +E+P+S V EK EE +K+G + I I VER Sbjct: 183 ICDQPLDNLLSDLVREQVLKNTREEVPHSVAVKIEKREELKRKNGKVFTAILATIIVERS 242 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +QK I++GK G +K I A+ ++++++ PVHL LFVKV +W Sbjct: 243 TQKSILIGKKGSMLKMIGQSARSNMSKLIDGPVHLELFVKVIPNW 287 >gi|332292384|ref|YP_004430993.1| GTP-binding protein Era [Krokinobacter diaphorus 4H-3-7-5] gi|332170470|gb|AEE19725.1| GTP-binding protein Era [Krokinobacter diaphorus 4H-3-7-5] Length = 294 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 160/279 (57%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG ++SI+T K QTTR + GIV+ ++ Q++ DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMLLSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ S + AD++ +V+ +ELK +I ++L++NK Sbjct: 64 IKPAYELQASMMDFVKSAFEDADVLLYIVELGEKELKD--EAFFNKIRGSKIPVLLLINK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + L E ++ ++ V + F +SA + G V N + LP +P Y DQ++ Sbjct: 122 IDKGNEDTLAEALKLWSEKVPNAEVFAISALESFGVPQVFNRIIELLPESPAFYPKDQLT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F EI REK+ +H KEIPY+ + TE + E +D I +R VI VER SQK I+ Sbjct: 182 DKPERFFVNEIIREKILMHYKKEIPYAVEIDTEDFFE-EDEIIRMRSVIMVERDSQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G +K + +EA+K++ + + VH+ L+VKV K+W Sbjct: 241 IGHKGTALKRVGVEARKDLQKFFGKQVHIELYVKVNKNW 279 >gi|229828496|ref|ZP_04454565.1| hypothetical protein GCWU000342_00558 [Shuttleworthia satelles DSM 14600] gi|229793090|gb|EEP29204.1| hypothetical protein GCWU000342_00558 [Shuttleworthia satelles DSM 14600] Length = 310 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 160/281 (56%), Gaps = 2/281 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTP 78 ++SG VA++G N GKSTL+N+ +G K++I ++K QTTR+ ++ + ++ + QIVFLDTP Sbjct: 12 TKSGFVAMIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVYTDPDRGQIVFLDTP 71 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI AK+ + M+ ++ ++K D++ +++ + +LKE+ + + L++N Sbjct: 72 GIHQAKNKLGQYMVGVAERSMKDVDLILWLIEPDTRVGGGDRHILKELEQIQIPVFLVIN 131 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID VK E++L + ++ V A G GC D++ + S LP P Y D + Sbjct: 132 KIDMVKKEKILAVIDTYRGEYDFDEILPVCARSGDGCKDLIESIFSRLPQGPMFYDEDTV 191 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D PM AEI REK L KE+P+ V + + + + I I ER S K Sbjct: 192 TDQPMRQIAAEIIREKALYALDKEVPHGIAVAMDVMKRRPGRELWDIEATIICERESHKG 251 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I +A+ E+ +L V+L LFVKV+++W Sbjct: 252 IIIGKRGAMLKRIGSDARYELERMLSSKVNLRLFVKVKENW 292 >gi|69247285|ref|ZP_00604286.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecium DO] gi|227551968|ref|ZP_03982017.1| GTP-binding protein Era [Enterococcus faecium TX1330] gi|257882780|ref|ZP_05662433.1| GTP-binding protein Era [Enterococcus faecium 1,231,502] gi|257884088|ref|ZP_05663741.1| GTP-binding protein Era [Enterococcus faecium 1,231,501] gi|257886866|ref|ZP_05666519.1| GTP-binding protein Era [Enterococcus faecium 1,141,733] gi|257890445|ref|ZP_05670098.1| GTP-binding protein Era [Enterococcus faecium 1,231,410] gi|257893051|ref|ZP_05672704.1| GTP-binding protein Era [Enterococcus faecium 1,231,408] gi|257895440|ref|ZP_05675093.1| GTP-binding protein Era [Enterococcus faecium Com12] gi|257898046|ref|ZP_05677699.1| GTP-binding protein Era [Enterococcus faecium Com15] gi|258616603|ref|ZP_05714373.1| GTP-binding protein Era [Enterococcus faecium DO] gi|260559560|ref|ZP_05831740.1| GTP-binding protein Era [Enterococcus faecium C68] gi|261208624|ref|ZP_05923061.1| GTP-binding protein Era [Enterococcus faecium TC 6] gi|289566737|ref|ZP_06447151.1| GTP-binding protein Era [Enterococcus faecium D344SRF] gi|293378307|ref|ZP_06624476.1| GTP-binding protein Era [Enterococcus faecium PC4.1] gi|293559428|ref|ZP_06675967.1| GTP-binding protein Era [Enterococcus faecium E1162] gi|293568654|ref|ZP_06679969.1| GTP-binding protein Era [Enterococcus faecium E1071] gi|294616318|ref|ZP_06696111.1| GTP-binding protein Era [Enterococcus faecium E1636] gi|294622998|ref|ZP_06701887.1| GTP-binding protein Era [Enterococcus faecium U0317] gi|314939540|ref|ZP_07846768.1| GTP-binding protein Era [Enterococcus faecium TX0133a04] gi|314942705|ref|ZP_07849531.1| GTP-binding protein Era [Enterococcus faecium TX0133C] gi|314948957|ref|ZP_07852323.1| GTP-binding protein Era [Enterococcus faecium TX0082] gi|314953304|ref|ZP_07856232.1| GTP-binding protein Era [Enterococcus faecium TX0133A] gi|314993384|ref|ZP_07858749.1| GTP-binding protein Era [Enterococcus faecium TX0133B] gi|314995734|ref|ZP_07860823.1| GTP-binding protein Era [Enterococcus faecium TX0133a01] gi|68194907|gb|EAN09377.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecium DO] gi|227178873|gb|EEI59845.1| GTP-binding protein Era [Enterococcus faecium TX1330] gi|257818438|gb|EEV45766.1| GTP-binding protein Era [Enterococcus faecium 1,231,502] gi|257819926|gb|EEV47074.1| GTP-binding protein Era [Enterococcus faecium 1,231,501] gi|257822920|gb|EEV49852.1| GTP-binding protein Era [Enterococcus faecium 1,141,733] gi|257826805|gb|EEV53431.1| GTP-binding protein Era [Enterococcus faecium 1,231,410] gi|257829430|gb|EEV56037.1| GTP-binding protein Era [Enterococcus faecium 1,231,408] gi|257832005|gb|EEV58426.1| GTP-binding protein Era [Enterococcus faecium Com12] gi|257835958|gb|EEV61032.1| GTP-binding protein Era [Enterococcus faecium Com15] gi|260074228|gb|EEW62550.1| GTP-binding protein Era [Enterococcus faecium C68] gi|260077126|gb|EEW64846.1| GTP-binding protein Era [Enterococcus faecium TC 6] gi|289161458|gb|EFD09344.1| GTP-binding protein Era [Enterococcus faecium D344SRF] gi|291588614|gb|EFF20447.1| GTP-binding protein Era [Enterococcus faecium E1071] gi|291590832|gb|EFF22548.1| GTP-binding protein Era [Enterococcus faecium E1636] gi|291597554|gb|EFF28716.1| GTP-binding protein Era [Enterococcus faecium U0317] gi|291606642|gb|EFF36037.1| GTP-binding protein Era [Enterococcus faecium E1162] gi|292643171|gb|EFF61312.1| GTP-binding protein Era [Enterococcus faecium PC4.1] gi|313590006|gb|EFR68851.1| GTP-binding protein Era [Enterococcus faecium TX0133a01] gi|313592049|gb|EFR70894.1| GTP-binding protein Era [Enterococcus faecium TX0133B] gi|313594647|gb|EFR73492.1| GTP-binding protein Era [Enterococcus faecium TX0133A] gi|313598570|gb|EFR77415.1| GTP-binding protein Era [Enterococcus faecium TX0133C] gi|313641176|gb|EFS05756.1| GTP-binding protein Era [Enterococcus faecium TX0133a04] gi|313644616|gb|EFS09196.1| GTP-binding protein Era [Enterococcus faecium TX0082] Length = 299 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++G+ + E+Q++F+DTPGI Sbjct: 5 KSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ ++S +K D V ++ + ++ +++ + S + LI+NKI Sbjct: 65 HKPKHRLGDFMVEAAYSALKEVDAVLFMISADQKRGRGDDFIIERLKNVHSPVYLIINKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ LL E + + + +SAT+G+ + +++ L S +P P + DQ++D Sbjct: 125 DKIHPDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ E+P+S VV + + ++ I I+ I VER SQK I++ Sbjct: 185 HPEYFIVSELIREKVLFLTRDEVPHSVAVVVDSMKRNENDKIHIQATIIVERDSQKGIII 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + +A+K+I +L V L L+VKVQKDW Sbjct: 245 GKGGKMLKQVGTKARKDIENLLGDKVFLELWVKVQKDW 282 >gi|312127538|ref|YP_003992412.1| gtp-binding protein era [Caldicellulosiruptor hydrothermalis 108] gi|311777557|gb|ADQ07043.1| GTP-binding protein Era [Caldicellulosiruptor hydrothermalis 108] Length = 300 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 174/284 (61%), Gaps = 4/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N VG K+SI++ K QTTR+ ++GI++ +++QI+F+DTPG+ Sbjct: 4 KSGFVALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNK 139 K+ + M+++S T+K D++ +V++ + +++++ + + IL+LNK Sbjct: 64 HPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKEVETPKILVLNK 123 Query: 140 IDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D E + + ++ + KL F E ++A G+ CD +L+ + LP P Y D Sbjct: 124 SDLASKENMEILKSIFSTKLNF-ESIVDIAAINGYNCDLLLSKIKELLPEGPKYYLDDMT 182 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D+ AEI REK+ L+L +E+P+ + E++ E+++ IL I IY E+ S K Sbjct: 183 TDVRESFIVAEIIREKILLNLSEEVPHGVGIAIERFAERENKDILDIEATIYCEKDSHKA 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK GQ +K I ++A++E+ I V+L L+VKV+K+W D Sbjct: 243 IIIGKGGQMLKKIGMQAREELEMIFGIKVNLQLWVKVKKNWRDD 286 >gi|229916327|ref|YP_002884973.1| GTP-binding protein Era [Exiguobacterium sp. AT1b] gi|229467756|gb|ACQ69528.1| GTP-binding protein Era [Exiguobacterium sp. AT1b] Length = 302 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 168/284 (59%), Gaps = 3/284 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q++ +SG V+++G N GKST +NR +G K++I++ K QTTR+ V+G+ + +SQI+F+D Sbjct: 3 QEDFKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVYTTDDSQIIFID 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGI K M++++ + ++ D + +V+ +++++ + +IL+ Sbjct: 63 TPGIHKPKHRLGDFMMKVATNALREVDAILFMVNVTEPRGAGDDFIIEKLKGLDTPIILV 122 Query: 137 LNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID + P+ L + E N+L F +SA +G+ + +L + LP P Y A Sbjct: 123 MNKIDLIHPDELPKVIEQYTNELDF-AAYVPISALQGNNVEPLLGEIKKLLPEGPMYYPA 181 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQ++D P +E+ REK+ E+P+S V E +++++ ++ + VI VER S Sbjct: 182 DQVTDHPERFIISEMIREKVLHKTRDEVPHSIAVAIESIKKRENSEMIDVEAVIMVERDS 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G ++ I +A+ +I +L V+L L+VKVQKDW Sbjct: 242 QKGIIIGKKGAMLREIGTDARHDIEALLGTKVYLNLWVKVQKDW 285 >gi|312793589|ref|YP_004026512.1| gtp-binding protein era [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875914|ref|ZP_07735904.1| GTP-binding protein Era [Caldicellulosiruptor lactoaceticus 6A] gi|311797395|gb|EFR13734.1| GTP-binding protein Era [Caldicellulosiruptor lactoaceticus 6A] gi|312180729|gb|ADQ40899.1| GTP-binding protein Era [Caldicellulosiruptor kristjanssonii 177R1B] Length = 300 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 174/284 (61%), Gaps = 4/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N VG K+SI++ K QTTR+ ++GI++ +++QI+F+DTPG+ Sbjct: 4 KSGFVALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNK 139 K+ + M+++S T+K D++ +V++ + +++++ + + IL+LNK Sbjct: 64 HPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKEVETPKILVLNK 123 Query: 140 IDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D E + + ++ + KL F E ++A G+ CD +L+ + LP P Y D Sbjct: 124 SDLASKENIEILKSIFSTKLNF-ESIVDIAAINGYNCDLLLSKIKELLPEGPKYYLDDMT 182 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D+ AEI REK+ L+L +E+P+ + E++ E+++ IL I IY E+ S K Sbjct: 183 TDVRESFIVAEIIREKILLNLSEEVPHGVGIAIERFAERENKDILDIEATIYCEKDSHKA 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK GQ +K I ++A++E+ I V+L L+VKV+K+W D Sbjct: 243 IIIGKGGQMLKKIGMQARQELEMIFGIKVNLQLWVKVKKNWRDD 286 >gi|222529401|ref|YP_002573283.1| GTP-binding protein Era [Caldicellulosiruptor bescii DSM 6725] gi|312622365|ref|YP_004023978.1| GTP-binding protein era [Caldicellulosiruptor kronotskyensis 2002] gi|254783286|sp|B9MS56|ERA_ANATD RecName: Full=GTPase Era gi|222456248|gb|ACM60510.1| GTP-binding protein Era [Caldicellulosiruptor bescii DSM 6725] gi|312202832|gb|ADQ46159.1| GTP-binding protein Era [Caldicellulosiruptor kronotskyensis 2002] Length = 300 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 173/284 (60%), Gaps = 4/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N VG K+SI++ K QTTR+ ++GI++ +++QI+F+DTPG+ Sbjct: 4 KSGFVALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNK 139 K+ + M+++S T+K D++ +V++ + +++ + + + IL+LNK Sbjct: 64 HPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIERLKEVETPKILVLNK 123 Query: 140 IDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D E + + ++ + KL F E ++A G+ CD +L+ + LP P Y D Sbjct: 124 SDLASKENIEILKSIFSTKLNF-ESIVDIAAINGYNCDLLLDKIKELLPEGPKYYLDDMT 182 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D+ AEI REK+ L+L +E+P+ + E++ E+++ IL I IY E+ S K Sbjct: 183 TDVRESFIVAEIIREKILLNLSEEVPHGVGIAIERFAERENKDILDIEATIYCEKDSHKA 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK GQ +K I ++A++E+ I V+L L+VKV+K+W D Sbjct: 243 IIIGKGGQMLKKIGMQAREELEMIFGIKVNLQLWVKVKKNWRDD 286 >gi|242091397|ref|XP_002441531.1| hypothetical protein SORBIDRAFT_09g028770 [Sorghum bicolor] gi|241946816|gb|EES19961.1| hypothetical protein SORBIDRAFT_09g028770 [Sorghum bicolor] Length = 459 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 167/293 (56%), Gaps = 16/293 (5%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG VA++G N GKSTL+N+ VG K+SIVT K QTTR + GI SE E QI+ DTP Sbjct: 117 NHRSGYVAVLGKPNVGKSTLINQMVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDTP 176 Query: 79 GIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL- 133 G+ K HKL M++ S I AD V +V D+ + + I ++L+E + + L Sbjct: 177 GVI--KKEMHKLDSMMMKNVRSAIGSADCVLVVADACKAPE-KIDEMLEEGVGNKDIALP 233 Query: 134 -ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +L+LNK D +KP + ++ E K ++ +SA G+G DD+ ++ S LPL P Sbjct: 234 VLLVLNKKDLIKPGEIAKKLEWYQKFTNVDDVIPISAKFGNGVDDIKEWILSKLPLGPAY 293 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D S+ P F EI REK+F+ +EIPYS V ++ + I+ I VE+ Sbjct: 294 YPKDIASEHPERFFVGEIVREKIFVQYRQEIPYSCQVNVVSYKSRPTAKDFIQVEILVEK 353 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPV------HLI-LFVKVQKDW 298 +Q+ I+LGK+G+ IK ++ ++ +I + L++ V HLI L+ V DW Sbjct: 354 ETQRSIILGKDGKAIKMLATASRLDIEDFLQKKVYLEVYIHLIHLYYMVAVDW 406 >gi|326692993|ref|ZP_08229998.1| GTPase [Leuconostoc argentinum KCTC 3773] Length = 303 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 166/290 (57%), Gaps = 8/290 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+NR VG K++I++ K QTTR+ ++GI + +Q+VF+DTPG+ Sbjct: 7 KSGFVAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDNAQVVFIDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 ++S M++ ++S + AD + VVD+ I LKE+ + + + L++ Sbjct: 67 HKPQNSLGDFMVKSAFSALHEADAIWFVVDASMPRGRGDDFIISRLKEV--KDTPIYLLI 124 Query: 138 NKIDCVKPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK+D V + LL+ Q+ + + E F +SAT+G ++L + +L P + + Sbjct: 125 NKVDLVTADELLDVIQSYQEDAPTWAE-VFPISATEGDNVPELLGNIVESLEEGPQYFDS 183 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ++D P E+ REK+ +EIP+S VV +K + + I I+ I VERP+Q Sbjct: 184 DQLTDHPERFVIGELIREKVLQLTRQEIPHSVAVVIDKIARESEDKIHIQASIIVERPTQ 243 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++GK G IK I A+K+I ++ V L +VKV+ W P+ Sbjct: 244 KNIIIGKQGAMIKEIGTRARKDIERLMGDKVFLETWVKVEPRWRDRPQAL 293 >gi|169832185|ref|YP_001718167.1| GTP-binding protein Era [Candidatus Desulforudis audaxviator MP104C] gi|169639029|gb|ACA60535.1| GTP-binding protein Era [Candidatus Desulforudis audaxviator MP104C] Length = 308 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 160/281 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V ++G N GKSTL+N VG KV+I++ K QTTR +R +++ ++Q+VF+DTPGI Sbjct: 15 RSGFVTIIGRPNVGKSTLLNSLVGRKVAIISDKPQTTRHRIRAVLTRDDAQVVFVDTPGI 74 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K ++M+ + T++ D++ ++++HRE +L+ +A + + L++NKI Sbjct: 75 HKPKHRLGRMMVDTALKTLQDVDLILFLIEAHRESGPGDDFILERLAGIRTPVFLVINKI 134 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V RLL + K + + +SA G +++ + LP P Y D +SD Sbjct: 135 DLVAKPRLLPLIDEMRKKMAFREIIPLSARTGENTGLLVDLVIGCLPPGPRYYPEDAVSD 194 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AE+ REK+ +E+P+S VV E+ + G +IR + VER SQK I++ Sbjct: 195 QAEEVILAELVREKVLHLTTQEVPHSVAVVVEEVFPGQKGVTVIRADVIVERESQKAILI 254 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 G+ G+ +K+I A++EI +L V+L L+VKV+ W D Sbjct: 255 GEGGRMLKSIGRLAREEIESLLGMRVYLELWVKVKPKWRQD 295 >gi|160947545|ref|ZP_02094712.1| hypothetical protein PEPMIC_01480 [Parvimonas micra ATCC 33270] gi|158446679|gb|EDP23674.1| hypothetical protein PEPMIC_01480 [Parvimonas micra ATCC 33270] Length = 298 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 108/285 (37%), Positives = 167/285 (58%), Gaps = 7/285 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 DN +SG V +VG +N GKSTL+NR +G K+SI++ K QTTR+ ++ I + +SQIVFLDT Sbjct: 2 DNIKSGFVTIVGRSNVGKSTLLNRIIGEKISIISSKPQTTRANLKLIYNSLDSQIVFLDT 61 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLI 134 PGI N K+ + M++ S S+++ D++ +VD + EL I D+L++I I Sbjct: 62 PGIQNPKNKLGEFMLKESRSSLRDVDLILYMVDVNFEIGELDNLIIDILRKINLPK---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++NKID + E L + + EK +SA++G ++++ + S LP P YS Sbjct: 119 CVINKIDTLNSEELSKLVSKYEGMELFEKIIPISASEGTNVYNLIDCIKSFLPYGPKYYS 178 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 D I+D +EI REK L EIP+ V+ EK+ +K+ I+ I +I VE+ Sbjct: 179 DDMITDQTEREIVSEIIREKTLNLLRDEIPHGINVLIEKFSVRKNKPIVDIDAIICVEKK 238 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GKNG I + A+ +I + L+ V+L LFVK+ DW Sbjct: 239 SHKGIVIGKNGDMILKLGKSARLDIEKFLDSKVNLKLFVKIDDDW 283 >gi|227874499|ref|ZP_03992671.1| GTP-binding protein Era [Oribacterium sinus F0268] gi|227839643|gb|EEJ50101.1| GTP-binding protein Era [Oribacterium sinus F0268] Length = 319 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 157/283 (55%), Gaps = 1/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG NAGKSTL+N +G KV+I + K QTTR+ + + E+ QIVF DTPGI Sbjct: 25 KSGFVSIVGLPNAGKSTLLNALIGQKVAITSKKPQTTRNQIMAVYDEERGQIVFHDTPGI 84 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ M ++ + + D+V +VD+ + +L + ++IL+LNK+ Sbjct: 85 HKAKNQLSVYMESVAEKALGNGDLVLYIVDATEQKGEKEEQILSLLKHSKRKIILVLNKL 144 Query: 141 DCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + E L++ E K + +SA K G +++ + L LP P Y + I+ Sbjct: 145 DLLGGEDAFLKKKEDYEKELDFAAIVGISAYKSQGLEELKDILFDLLPYGPRYYDEETIT 204 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ AE+ RE+ L KEIP+ V+ + E+K+G ++ I E+ S K I+ Sbjct: 205 DQPVREIAAELIREQALYKLDKEIPHGIAVLMDSMRERKNGIWDVKATIVCEKESHKGII 264 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 +GK G +K I A+ ++ +LE V+L LFVKV+KDW +P Sbjct: 265 IGKGGAMLKNIGTGARIQMESLLEAKVNLQLFVKVRKDWRENP 307 >gi|227510288|ref|ZP_03940337.1| GTP-binding protein Era [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227524439|ref|ZP_03954488.1| GTP-binding protein Era [Lactobacillus hilgardii ATCC 8290] gi|227088398|gb|EEI23710.1| GTP-binding protein Era [Lactobacillus hilgardii ATCC 8290] gi|227189940|gb|EEI70007.1| GTP-binding protein Era [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 300 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 101/283 (35%), Positives = 162/283 (57%), Gaps = 7/283 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG VA+VG N GKST +NR VG K++I++ K QTTR+ ++G+ + E+Q+VF+DTP Sbjct: 5 NYRSGFVAIVGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGVYTTDEAQVVFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLIL 135 GI ++ M+ + S +K D V +V++ I D LK++ K + L Sbjct: 65 GIHKPQNKLGDFMMDSALSALKEVDAVLFMVNATERRGAGDNFIIDRLKDVHK---PIYL 121 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID + P+ ++ E + ++ F +SA +G+ ++L L LP P Y Sbjct: 122 LINKIDEITPDDVMAIIEQYKNALSFKEVFPISALQGNNVPELLTSLIKELPNGPQYYPK 181 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ++D P +E+ REK+ +EIP+S+ V E +K+D + I+ I VER Q Sbjct: 182 DQVTDHPERFVISELIREKVLQMTRQEIPHSTAVYIESI-KKQDEVLHIQATIIVERDGQ 240 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+K+I ++ V+L L+VKV+ W Sbjct: 241 KGIVIGKGGSMLKKIGTLARKDIENMMGNKVYLELWVKVEAHW 283 >gi|227529166|ref|ZP_03959215.1| GTP-binding protein Era [Lactobacillus vaginalis ATCC 49540] gi|227350891|gb|EEJ41182.1| GTP-binding protein Era [Lactobacillus vaginalis ATCC 49540] Length = 301 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 156/281 (55%), Gaps = 2/281 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VAL+G N GKST +N VG KV+I+++ QTTR+ ++GI + ++QIVF+DTP Sbjct: 5 NYKSGFVALIGRPNVGKSTFLNYVVGQKVAIMSNVAQTTRNKIQGIYTTNDAQIVFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ + M + + S + D V +V + + ++ + + L++N Sbjct: 65 GVHKPQTKLGDFMEKSTLSALDEVDAVLYLVSATEDRGPGDDFIINRLKNVKQPIFLVIN 124 Query: 139 KIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V P L E A+ + L F + +SA +G+ ++N L TLP P Y +DQ Sbjct: 125 KIDQVNPNDLPEITAQYKDALPF-AGIYPISALQGNNVSPLINKLIETLPNGPQYYPSDQ 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ISD P AE+ REK+F +E+P+S + + + D + I I VERP QK Sbjct: 184 ISDHPERFVIAEMIREKVFELTRQEVPHSVAIDVTSVKREDDEHVHISANIIVERPGQKG 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK GQ +K I +A+++I +L V L L+VKV DW Sbjct: 244 IIIGKKGQMLKKIGTKARQDIEHLLGDKVFLQLWVKVVPDW 284 >gi|15672333|ref|NP_266507.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis Il1403] gi|125623240|ref|YP_001031723.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris MG1363] gi|281490898|ref|YP_003352878.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis KF147] gi|61223689|sp|P0A3C1|ERA_LACLA RecName: Full=GTPase Era gi|61223690|sp|P0A3C2|ERA_LACLM RecName: Full=GTPase Era gi|8163994|gb|AAF73946.1|AF233268_1 GTP-binding protein Era [Lactococcus lactis subsp. cremoris MG1363] gi|12723220|gb|AAK04449.1|AE006272_3 GTP-binding protein Era [Lactococcus lactis subsp. lactis Il1403] gi|124492048|emb|CAL96976.1| GTP-binding protein era homolog [Lactococcus lactis subsp. cremoris MG1363] gi|281374656|gb|ADA64176.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis KF147] gi|300069990|gb|ADJ59390.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris NZ9000] gi|326405932|gb|ADZ63003.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis CV56] Length = 303 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 167/280 (59%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ ++GI + + QIVF+DTPGI Sbjct: 7 KSGFVAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIYTTENEQIVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ M++ ++ST++ D+V +V + + +++ + K +IL++NKI Sbjct: 67 HKPHNALGDFMVQSAYSTLRECDVVLFMVAADEPRSTGENMIIERLKKAEVPVILVVNKI 126 Query: 141 DCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + P+RL E A+ +++ F E +SA +G+ + +++ L L P + DQI+ Sbjct: 127 DKIHPDRLFEIVADYTSQMEFSE-VVPISAKQGNNTERLIDTLSEKLDEGPQYFPEDQIT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVERPSQKKI 258 D P +E+ REK+ L +E+P+S V T++ +++ G I I I VER SQK I Sbjct: 186 DHPERFLVSEMIREKILLLTREEVPHSIAVTTDQMTRDEETGKIHIMATIIVERKSQKGI 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +LGK G I+ I A+++I +L V+L +VK++ DW Sbjct: 246 ILGKGGDMIRKIGKMARRDIEIMLGDKVYLETWVKIKNDW 285 >gi|293556346|ref|ZP_06674927.1| GTP-binding protein Era [Enterococcus faecium E1039] gi|291601413|gb|EFF31684.1| GTP-binding protein Era [Enterococcus faecium E1039] Length = 299 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++G+ + E+Q++F+DTPGI Sbjct: 5 KSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ ++S +K D V ++ + ++ +++ + S + LI+NKI Sbjct: 65 HKPKHRLGDFMVEAAYSALKEVDAVLFMISADQKRGRGDDFIIERLKNVHSPVYLIINKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ LL E + + + +SAT+G+ + +++ L S +P P + DQ++D Sbjct: 125 DKIHPDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ E+P+S VV + + ++ I I+ I VER SQK I++ Sbjct: 185 HPEYFIVSELIREKVLFLTRDEVPHSVAVVVDSMKRNENDKIHIQATIIVERDSQKGIII 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + +A+K+I +L + L L+VKVQKDW Sbjct: 245 GKGGKMLKQVGTKARKDIENLLGDKIFLELWVKVQKDW 282 >gi|225027254|ref|ZP_03716446.1| hypothetical protein EUBHAL_01510 [Eubacterium hallii DSM 3353] gi|224955407|gb|EEG36616.1| hypothetical protein EUBHAL_01510 [Eubacterium hallii DSM 3353] Length = 301 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 160/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N+ +G K++I + K QTTR+ ++ + + +E QIVFLDTPGI Sbjct: 6 KSGFVTIIGRPNVGKSTLMNQLIGQKIAITSSKAQTTRNRIQTVYTSEEGQIVFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ M+ + T+ D++ +V+ + +++++ + + L++NK Sbjct: 66 NKAKNKLGDYMLMAAERTLNEVDLILWLVEPTTFIGGGEQYIIEKLQNVKTPIFLVINKT 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E +L+ + VSA +G+ DD+++ + LP P Y D I+D Sbjct: 126 DVATEEEILKAIVAYKDQCNFAEIIPVSALEGNNTDDLVHSIFKYLPEGPMYYDEDTITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ REK L +EIP+ VV E+ + +K+G+I+ I VI ER S K+I+ Sbjct: 186 QPERQIVAELVREKALRLLSQEIPHGIAVVIERMKTRKNGNIVDIEAVIVCERESHKRII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G IK I +A+ E+ +L+ V+L L+VKV+KDW Sbjct: 246 IGKKGAMIKEIGTQARVEMENLLDMKVNLRLWVKVRKDW 284 >gi|226323780|ref|ZP_03799298.1| hypothetical protein COPCOM_01555 [Coprococcus comes ATCC 27758] gi|225207964|gb|EEG90318.1| hypothetical protein COPCOM_01555 [Coprococcus comes ATCC 27758] Length = 298 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 158/278 (56%), Gaps = 1/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ E QIVF+DTPGI Sbjct: 6 KSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTDEGQIVFVDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ M+ ++ T+ D+V +V+ + +++++ K ++ ++L++NK Sbjct: 66 HKAKNKLGTYMVNVAERTLNEVDVVLWLVEPSTFIGAGEQHIVQQLGKVTTPVVLVINKA 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VK E +L N++ VSA G D++L + LP P Y D I+D Sbjct: 126 DTVKKEDILPCIAKYNEVYQFADIVPVSARTGENTDELLKVIMKYLPYGPQFYDEDTITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK L++EIP+ V EK + +K + I I ER S K I++ Sbjct: 186 QPERQIVAELIREKALHCLNEEIPHGIAVSIEKMKARKK-VMDIEATIICERDSHKGIII 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K I A+ EI ++LE V+L L+VKV+KDW Sbjct: 245 GKQGSMLKKIGSTARYEIEQMLECKVNLQLWVKVKKDW 282 >gi|50365082|ref|YP_053507.1| GTP-binding protein Era [Mesoplasma florum L1] gi|50363638|gb|AAT75623.1| GTP-binding protein, cell cycle control [Mesoplasma florum L1] Length = 301 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 170/281 (60%), Gaps = 4/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +++VG N GKSTL+N+ +G K+SIVT+K QTTR+ +RGI++EKE Q++F+DTPGI Sbjct: 5 KSGFISIVGRPNVGKSTLLNKIIGHKISIVTNKAQTTRNNIRGILTEKEYQLIFVDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 +K+ + M + ++K D+V + + + N +L E++K++ + IL+++K Sbjct: 65 HTSKNQIDRFMNSSAMRSMKEVDVVVFMAPADETIGKNDLFILNELSKKNDIKKILVISK 124 Query: 140 IDCVKPERLLEQAEIANKLVFI-EKTFMVSATKGHGCDDVLNYLCSTLP-LAPWVYSADQ 197 D V E+L +A N I ++ + S+T+ D ++ + LP + Y + Sbjct: 125 ADVVSKEKLFLKATEWNTYEQIFDEIIITSSTENINIDKLIETIVGFLPETGHYFYDEES 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+D P EI RE + L +E+P+S ++ ++ EE +D I I I VER SQK Sbjct: 185 ITDQPNRFAIREIIRESVLLKAGQEVPHSVAILVDELEETED-EINIVASIIVERKSQKG 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++G G+ I I +++K+I E+ E+ V+L LFVKVQ++W Sbjct: 244 IIIGHQGKKISDIKYKSRKQIRELFEKDVNLELFVKVQENW 284 >gi|10177528|dbj|BAB10923.1| GTP-binding protein-like [Arabidopsis thaliana] Length = 353 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 170/300 (56%), Gaps = 9/300 (3%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 +++ +F G VA+VG N GKSTL N+ +G K+SIVT K QTTR + GI S Sbjct: 41 YYDWETEFGDYGCYIGYVAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSS 100 Query: 68 KESQIVFLDTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 E Q++ DTPG+ K H+L M++ +AD V ++VD+ + NI ++LK Sbjct: 101 PEYQMILYDTPGVIEKK--MHRLDTMMMKNVRDAAINADCVVILVDACK-TPTNIEEVLK 157 Query: 125 E---IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 E ++ ++L++NK D +KP + ++ E K +++ VSA GHG +DV + Sbjct: 158 EGLGDLEKKPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGIEDVKEW 217 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS 241 + S LP P Y D +S+ P F +EI REK+F+ E+PY+ V ++ + Sbjct: 218 ILSKLPFGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAK 277 Query: 242 ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I+ + V++ SQK I++GK G+ +KT++ A+ +I + L++ V L + VKV+++W D Sbjct: 278 DFIQVEVVVDKNSQKIILIGKEGKALKTLATAARLDIEDFLQKKVFLEVEVKVKENWRQD 337 >gi|116511210|ref|YP_808426.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris SK11] gi|122940350|sp|Q031W8|ERA_LACLS RecName: Full=GTPase Era gi|116106864|gb|ABJ72004.1| GTPase [Lactococcus lactis subsp. cremoris SK11] Length = 303 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 167/280 (59%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ ++GI + + QIVF+DTPGI Sbjct: 7 KSGFVAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIYTTENEQIVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ M++ ++ST++ D+V +V + + +++ + K +IL++NKI Sbjct: 67 HKPHNALGDFMVQSAYSTLRECDVVLFMVAADEPRSTGENMIIERLKKAEVPVILVVNKI 126 Query: 141 DCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + P+RL E A+ +++ F E +SA +G+ + +++ L L P + DQI+ Sbjct: 127 DKIHPDRLFEIVADYTSQMEFSE-VVPISAKQGNNTERLIDTLSEKLDEGPQYFPEDQIT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVERPSQKKI 258 D P +E+ REK+ L +E+P+S V T++ +++ G I I I VER SQK I Sbjct: 186 DHPERFLVSEMIREKILLLTREEVPHSIAVTTDQMTRDEETGKIHIMATIIVERKSQKGI 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +LGK G I+ I A+++I +L V+L +VK++ DW Sbjct: 246 ILGKGGDMIRKIGKMARRDIEIMLGDKVYLETWVKIKNDW 285 >gi|294793788|ref|ZP_06758925.1| GTP-binding protein Era [Veillonella sp. 3_1_44] gi|294455358|gb|EFG23730.1| GTP-binding protein Era [Veillonella sp. 3_1_44] Length = 307 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 156/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++IV+ K QTTR+ + + +++ QIVF+DTPG+ Sbjct: 16 KSGFVAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMDTPGV 75 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + ++K + V VV + + + +++++ + + L++NKI Sbjct: 76 HKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKI 135 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +K E LLE +SA ++L L TLP P + D I+D Sbjct: 136 DTLKKEELLEAIVFYQDAYPFAGVIPISAKDKENLSEILKVLEETLPEGPQYFPEDMITD 195 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P ++I REK+ L EIP++ V ++ + + DG+ IR IY ER SQK I++ Sbjct: 196 QPERLIISDIVREKILLATRDEIPHAIAVDVDEMKTRDDGTTYIRATIYCERDSQKGIII 255 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + EA+ +I ++L V+L L+VKV+KDW Sbjct: 256 GKKGALLKQLGAEARADIQKLLATKVYLDLWVKVKKDW 293 >gi|160940878|ref|ZP_02088218.1| hypothetical protein CLOBOL_05770 [Clostridium bolteae ATCC BAA-613] gi|158436122|gb|EDP13889.1| hypothetical protein CLOBOL_05770 [Clostridium bolteae ATCC BAA-613] Length = 303 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 158/287 (55%), Gaps = 17/287 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + ++ QI+FLDTPGI Sbjct: 8 KSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDDRGQIIFLDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ ++ T+K D++ +V+ + + +++ + +IL++NKI Sbjct: 68 HKAKNKLGQYMVNVAEHTLKEVDVILWLVEPATFIGAGERHIAEQLKNVKTPIILVINKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIE---------KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 D VK Q EI L FI + +SA K D + + LP P Sbjct: 128 DTVK-----NQDEI---LTFIAAYKDVCDFAEIVPLSALKDKNTDLLTELIFKYLPYGPQ 179 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 Y D ++D PM AE+ REK L EIP+ V EK +E+K G I I I E Sbjct: 180 FYDEDTVTDQPMRQIAAELIREKALRLLDDEIPHGIAVTIEKMKERKGGLIDIEASIVCE 239 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R S K I++GK G +K I +EA+KEI +++ V+L L+VKV+K+W Sbjct: 240 RESHKGIIIGKGGSMLKRIGIEARKEIESMMDTQVNLQLWVKVRKEW 286 >gi|163786092|ref|ZP_02180540.1| putative GTP-binding protein [Flavobacteriales bacterium ALC-1] gi|159877952|gb|EDP72008.1| putative GTP-binding protein [Flavobacteriales bacterium ALC-1] Length = 293 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 105/279 (37%), Positives = 161/279 (57%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N F+G K+SI+T K QTTR + GIV+ + Q++ DTPGI Sbjct: 3 KAGFVNIIGNPNVGKSTLMNAFIGEKLSIITSKAQTTRHRILGIVNGDDFQVILSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ S + AD++ +V+ + LK K+I ++L+LNK Sbjct: 63 IKPAYELQTSMMDFVKSAFEDADVLIYMVEIGEKALKD--EAFFKKITNSKIPVLLLLNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID E+L EQAE+ V + + +SA KG +V + + LP +P Y DQ++ Sbjct: 121 IDNSNQEQLEEQAELWQSKVPNAEFYPISALKGFNVQNVFDRIIELLPESPAFYPKDQLT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F E REK+ +H KEIPY+ V TE++ E++ I +R VI VER +QK I+ Sbjct: 181 DKPERFFVNEAIREKILMHYKKEIPYAVEVDTEEFFEEEK-IIRMRSVIMVERETQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G +K + +EA+K++ + + VHL L+VKV K+W Sbjct: 240 IGHKGSALKRVGVEARKDLEKFFGKQVHLELYVKVNKNW 278 >gi|296112101|ref|YP_003622483.1| GTP-binding protein [Leuconostoc kimchii IMSNU 11154] gi|295833633|gb|ADG41514.1| GTP-binding protein [Leuconostoc kimchii IMSNU 11154] Length = 303 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 165/289 (57%), Gaps = 6/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+NR VG K++I++ K QTTR+ ++GI + +Q+VF+DTPG+ Sbjct: 7 KSGFVAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDAAQVVFIDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 ++S M++ ++S + AD + VVD+ I + L+E++ ++ + L++ Sbjct: 67 HKPQNSLGDFMVKSAFSALHEADAIWFVVDASMPRGRGDDFIINRLQEVS--NTPIYLLI 124 Query: 138 NKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D + P+ LL A + F +SA +G ++L+ + + L P + AD Sbjct: 125 NKVDLISPQDLLTIIASYQTDAPGWTEVFPISAREGDNVPELLDNIVANLEEGPQYFDAD 184 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q++D P E+ REK+ +E+P+S VV +K + + I I+ I VERP+QK Sbjct: 185 QLTDHPERFVIGELIREKVLQLTRQEVPHSVAVVIDKISRENEEKIHIQASIIVERPTQK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G IK I A+K+I ++ V L +VKV+ W P+ Sbjct: 245 NIIIGKQGAMIKDIGTRARKDIERLMGDKVFLETWVKVEPRWRDRPQAL 293 >gi|328954426|ref|YP_004371760.1| GTP-binding protein Era-like-protein [Desulfobacca acetoxidans DSM 11109] gi|328454750|gb|AEB10579.1| GTP-binding protein Era-like-protein [Desulfobacca acetoxidans DSM 11109] Length = 306 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 166/294 (56%), Gaps = 2/294 (0%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 ++ V+ R G VAL G N GKSTL+NR V K++I + K QTTR + GIV +Q+ Sbjct: 6 RERVKTEFRCGYVALGGVPNVGKSTLLNRLVAEKLAITSPKPQTTRHRLLGIVHLPRAQL 65 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +F+D PGI + ++ ++ + T+K AD+V +V + +E +L I + Sbjct: 66 LFMDMPGIIDPGSLLNESLVNTALGTLKDADVVVWLV-TPQETAAESRVILPHIRLLAKP 124 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +++ +NKID + +L E + L+ V+A G G +L + + LP AP + Sbjct: 125 VVIAINKIDTIPKLEILPLIEFYHSLLPEAPVTPVAALTGDGLPHLLTEIINLLPKAPPL 184 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 Y DQ++D AE RE++F H +EIPY++ V E+++EK ++ +R VIYVE Sbjct: 185 YPDDQLTDQTERFLAAEFIRERVFHHTAEEIPYAAAVQLEEFDEKDRPRLIRLRAVIYVE 244 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R SQK IM+G+ G +K I EA+ ++ +L V+L L+VKV K+W DP+ Sbjct: 245 RDSQKAIMIGRKGARLKAIGQEARIDLEILLGCKVYLELWVKVWKNWRKDPRAL 298 >gi|260583651|ref|ZP_05851399.1| GTP-binding protein Era [Granulicatella elegans ATCC 700633] gi|260158277|gb|EEW93345.1| GTP-binding protein Era [Granulicatella elegans ATCC 700633] Length = 302 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 101/279 (36%), Positives = 171/279 (61%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKST +N +G K++I++ K QTTR+ ++G+ + ++ QIVFLDTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTFMNYVLGQKIAIMSDKAQTTRNKIQGVYTNQDCQIVFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ ++S +K D V +V++ + +++++ K + + L+LNKI Sbjct: 66 HKPKHELGNFMVESAYSALKEVDAVLFMVNAAEKRGPGDDFIIEKLKKIKTPVFLVLNKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ LL++ E + + +S +G+ +++ L + LP P Y +DQI+D Sbjct: 126 DLISPDELLDRVESYQETIPFAGIIPISVLQGNNVQELMTTLTNHLPEGPQYYPSDQITD 185 Query: 201 LPMFHFTAEITREKLFLHLHK-EIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 P + +E+ REK+ LHL K EIP+S V +K ++ + + + I VERP+QK I+ Sbjct: 186 HPEYFVVSELIREKI-LHLTKEEIPHSVAVTVDKMQKDEFDKVHVYANIIVERPTQKGII 244 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G+ +K I + A+K+I ++L V+L L+VKV+KDW Sbjct: 245 IGKGGKLLKEIGVRARKDIEQLLGNKVYLELWVKVEKDW 283 >gi|126696804|ref|YP_001091690.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9301] gi|126543847|gb|ABO18089.1| GTP-binding protein ERA-like protein [Prochlorococcus marinus str. MIT 9301] Length = 303 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 164/285 (57%), Gaps = 5/285 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG V L+G N GKSTL+N+ +G K++I + QTTR+ ++GI++ QI+F+DTP Sbjct: 3 NYRSGFVTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTDNGQIIFVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ +++++ + S I D+V V+DS E +L + + I+ LN Sbjct: 63 GVHKPHHRLGEILVKNAKSAINGVDMVIFVIDSSEEPGRGDEYILNFLISNKTEFIVALN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF-MVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V E + + + I + F +VSA++G GC ++++ + LP P +Y + Sbjct: 123 KWDLVNKEFRNLRLDQYRRFFGINRNFQIVSASQGEGCSELVDMALNFLPEGPKLYGEET 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--KKDGSIL--IRQVIYVERP 253 I D P+ + +++ RE++ + +E+P+S V EK EE +K+G + I I VER Sbjct: 183 ICDQPLDNLLSDLVREQVLKNTREEVPHSVAVKIEKMEEMKRKNGKVFTAILATIIVERS 242 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +QK I++GK G +K I A+ ++++++ PVHL LFVKV +W Sbjct: 243 TQKGILIGKKGSMLKMIGQSARANMSKLIDCPVHLELFVKVIPNW 287 >gi|257869127|ref|ZP_05648780.1| GTP-binding protein Era [Enterococcus gallinarum EG2] gi|257803291|gb|EEV32113.1| GTP-binding protein Era [Enterococcus gallinarum EG2] Length = 299 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 168/279 (60%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A+VG N GKSTL+NR VG K++I++ K QTTR+ ++G+ + ++QIVF+DTPGI Sbjct: 5 KSGFAAIVGRPNVGKSTLLNRVVGQKIAIMSDKAQTTRNKIQGVYTTPDAQIVFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ ++S ++ D+ ++ + ++ +++ + K + + L++NKI Sbjct: 65 HKPKHRLGDFMVETAYSALREVDVTLFMISADQKRGKGDDFIIERLRKNETPVFLVINKI 124 Query: 141 DCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V P+ LL E A ++ F E +SAT+G+ + ++ + +P P + DQI+ Sbjct: 125 DKVHPDELLAIIEDYAAQMTFAE-IVPISATEGNNFETLMRLVIDQMPEGPQYFPEDQIT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P + +E+ REK+ L E+P+S VV + + ++ I I+ I VER SQK I+ Sbjct: 184 DHPEYFIVSELVREKVLLLTRDEVPHSVAVVVDSMKRDENDKIHIQATIVVERDSQKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G+ +K I +A+ +I +L+ V+L L+VKVQKDW Sbjct: 244 IGKGGKMLKQIGTKARLDIEHLLDDKVYLELWVKVQKDW 282 >gi|194334593|ref|YP_002016453.1| GTP-binding protein Era [Prosthecochloris aestuarii DSM 271] gi|194312411|gb|ACF46806.1| GTP-binding protein Era [Prosthecochloris aestuarii DSM 271] Length = 307 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 103/291 (35%), Positives = 167/291 (57%), Gaps = 10/291 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 DN G A++G NAGKSTL+NR + K+SIVT K QTTR + GI ++ QI+FLDT Sbjct: 5 DNFSCGYAAIIGPPNAGKSTLLNRLLDHKLSIVTPKSQTTRKKITGIYHNEDCQIIFLDT 64 Query: 78 PGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-----IAKRSS 131 PGI + H+ M++ + T++ AD+V ++ + R+ + + K+ + + Sbjct: 65 PGIMIDPMHMLHEAMLKTTRETLREADVVVALIPAVRKETLFDREFTKQLFHDWLTREKK 124 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ++ +LNK D + E + K + EK +SA +G DD++ L LP+ Sbjct: 125 PVVAVLNKCDLLSKAEQKEALAMIRKELKPEKAMALSALQGTHVDDLVEALQPFLPMDEP 184 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LIRQV 247 +Y D +S P F +EI REK+FL KEIPY++ VV ++++E+ + LIR Sbjct: 185 LYPEDILSTAPERFFVSEIIREKIFLQYGKEIPYATEVVIDEFKEQHEEDPTRKDLIRCS 244 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + VER +QK I++GK G +K + +++EI + L++PV L +FVKV+ +W Sbjct: 245 VVVERDTQKHILIGKKGSALKKLGQASREEIEKFLDRPVFLEIFVKVRPNW 295 >gi|325954893|ref|YP_004238553.1| GTP-binding protein Era-like-protein [Weeksella virosa DSM 16922] gi|323437511|gb|ADX67975.1| GTP-binding protein Era-like-protein [Weeksella virosa DSM 16922] Length = 295 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 165/282 (58%), Gaps = 2/282 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +N +SG V ++G N GKSTL+N + ++ I THK QTTR ++GI++ + QIVF D Sbjct: 4 NENFKSGFVNIIGNPNVGKSTLMNLLMKERLVIATHKAQTTRHRIKGILTGENYQIVFSD 63 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ + LM+ ++ AD++ VV+ E ++ ++ ++I + + +++ Sbjct: 64 TPGVIDPAYELQNLMMDSVKESLIDADVLLYVVEVG-EKRMKNEEIFEKIQQTNVPTLIL 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNKID V E+L + + + L+ + +SA + D ++N + LP P Y D Sbjct: 123 LNKIDLVSQEKLDQAVDHWHALLPNAQILPISAKENFNIDLLINKIIELLPNGPMYYPED 182 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q++D E+ REK+ LH KEIPY+ VVTE+++E+ I I IYVER SQK Sbjct: 183 QLTDRSERFIVNEVIREKILLHYEKEIPYAVEVVTERFKEEM-TMIYIEADIYVERDSQK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++G+ G+ + + EA++E+ + ++ V L L+VKV+KDW Sbjct: 242 GIIIGRKGEALSRVGKEAREELEKFFDKKVFLKLYVKVKKDW 283 >gi|270291317|ref|ZP_06197539.1| GTP-binding protein Era [Pediococcus acidilactici 7_4] gi|304385067|ref|ZP_07367413.1| GTP-binding protein Era [Pediococcus acidilactici DSM 20284] gi|270280163|gb|EFA25999.1| GTP-binding protein Era [Pediococcus acidilactici 7_4] gi|304329261|gb|EFL96481.1| GTP-binding protein Era [Pediococcus acidilactici DSM 20284] Length = 304 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 161/278 (57%), Gaps = 1/278 (0%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA+VG N GKST +N VG KV+I++ QTTR+ ++GI + QIVF+DTPGI Sbjct: 10 SGFVAIVGRPNVGKSTFLNYVVGQKVAIMSDVPQTTRNKIQGIYTTDREQIVFIDTPGIH 69 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI-LILNKI 140 A + M++ + S++ D V +V++ ++ + +++ + K +R I L++NKI Sbjct: 70 KAHNKLGDFMVQSAISSLNEVDAVMFMVNADQKRGAGDNYIIERLKKIKNRPIYLVINKI 129 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL + + + F +SA +G+ +++L L +P P Y +DQ++D Sbjct: 130 DLVHPDELLPIVDSYRDALDWTEVFPISALQGNNINELLATLSKQMPEGPQYYPSDQVTD 189 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +E+P+S VV E + KD + I I V+RP+QK I++ Sbjct: 190 HPERFVVSELIREKVLQLTRQEVPHSVAVVIESMKPGKDDLVDISATIIVDRPTQKGIII 249 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I A+ +I +L V+L L+VKV + W Sbjct: 250 GKGGRMLKEIGSRARVDIEHLLGSRVYLELWVKVSEGW 287 >gi|110639447|ref|YP_679656.1| GTP-binding protein Era [Cytophaga hutchinsonii ATCC 33406] gi|110282128|gb|ABG60314.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406] Length = 298 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 111/284 (39%), Positives = 166/284 (58%), Gaps = 14/284 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V+++G NAGKSTL+N VG ++SI+T K QTTR V GI+++ E QIV+ DTPG+ Sbjct: 8 KAGFVSIIGRPNAGKSTLMNCLVGERLSIITPKAQTTRHRVMGIINDPEFQIVYSDTPGV 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILILNK 139 K K M+R +++ AD++ V+D H L L+ + ++L+LNK Sbjct: 68 IEPKYELQKSMMRFVDFSLEDADMILWVLDVK---DPEDHALVLQRLNNVEVPVLLVLNK 124 Query: 140 IDCVKPER---LLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ID E L+E +AE + VSA K D VL ++ S LP P Y Sbjct: 125 IDLSTQEEIDALVEKWKAEFPKA----DSILAVSALKNFNSDMVLKWVLSHLPQHPPFYD 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D+++D P F +EI REK+F + KEIPYSS V+ E ++++KD + I+ VI VER S Sbjct: 181 KDELTDKPERFFASEIFREKIFKNYSKEIPYSSEVLIESFKDQKD-LLRIQAVIIVERDS 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++G+ G+ +K + +A+K + E + V L FVKV+ DW Sbjct: 240 QKGIVIGQGGEALKRTATQARKSMEEFFGKKVFLETFVKVEPDW 283 >gi|323342097|ref|ZP_08082330.1| GTP-binding protein Era [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464522|gb|EFY09715.1| GTP-binding protein Era [Erysipelothrix rhusiopathiae ATCC 19414] Length = 298 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 162/287 (56%), Gaps = 2/287 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +++VG NAGKSTL+N+ V K++IVT K QTTR + G+ +E++ Q++F+DTPGI Sbjct: 4 KSGFISIVGRPNAGKSTLINQIVKQKIAIVTEKAQTTRDAIIGVKTEEDYQLIFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M R +++ K D+V ++D +++ ++K + LI+NK+ Sbjct: 64 HKPKHQLGERMNRTAYAHFKGVDLVYYIIDGAEPFGTGDEFVIERLSKLKIPVFLIINKV 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + + LLE+ + F E +SA + + D +L+ S + Y DQ+S Sbjct: 124 DKMSEQALLERIAASTDFQFAE-IVPISALENNNVDRLLDVTLSYMEEGVMYYPKDQVSA 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AEI REK+ +EIP+S V E+ +KK+ +I I VI V+RPSQK I++ Sbjct: 183 YPEQFIMAEIVREKILELTEEEIPHSVAVAIERIVKKKNATI-ISAVILVDRPSQKGIII 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 GK G IK I A+ E+ +L + V L +V+V+K+W + + Q Sbjct: 242 GKQGSMIKQIGERARGELETVLGEKVFLETYVRVEKNWRNRARMLNQ 288 >gi|291522460|emb|CBK80753.1| GTP-binding protein Era [Coprococcus catus GD/7] Length = 300 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 158/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG L+G N GKSTL+N +G K++I ++K QTTR+ ++ + + +E QIVF+DTPGI Sbjct: 6 KSGFATLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTSEEGQIVFVDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ ++ T+ D++ +V+ + + +++ K + +IL++NKI Sbjct: 66 HKAKNKLGEYMVTVAERTLSEVDVILWLVEPTTFIGAGEQHIAEQLRKTKTPIILVINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VK E +L+ + + + SA KG +D++ + LP P Y D ++D Sbjct: 126 DTVKREEILKSIDAYKDICDFAEIVPCSALKGDNTEDLIKVIMKYLPYGPQFYDEDTVTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK L++E+P+ V ++ + + I I I ER S K I++ Sbjct: 186 QPERQIVAELIREKALRSLNEEVPHGIAVSIDQMKARNSRLIDIDATIICERDSHKGIII 245 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K I +A+ EI ++L + V+L L+VKV+KDW Sbjct: 246 GKQGAMLKKIGSQARPEIEDMLGKKVNLKLWVKVKKDW 283 >gi|260438846|ref|ZP_05792662.1| GTP-binding protein Era [Butyrivibrio crossotus DSM 2876] gi|292808685|gb|EFF67890.1| GTP-binding protein Era [Butyrivibrio crossotus DSM 2876] Length = 298 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 160/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G VAL+G N GKSTL+N +G K++I ++K QTTR+ ++ + +++ QI+FLDTPGI Sbjct: 4 KTGFVALIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVYTDERGQIIFLDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ ++ T++ D++ +V+ + ++ + +IL++NK+ Sbjct: 64 HKAKNKLGEYMVTVAEKTLEDVDVILWLVEPTTYIGAGEQHIIATLKNCKKPVILVINKV 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V +L+ + +K + + VSA KG +D+ + LP P Y D ++D Sbjct: 124 DTVDKPEILKFIDRYSKEMKFSEIIPVSALKGINTEDLKETIFKYLPYGPMFYDEDTVTD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 PM AE+ REK L EIP+ V E +E+ DGS+ I I ER S K I+ Sbjct: 184 QPMRQIVAELIREKALKCLSDEIPHGIAVTIETMKERPDGSMWDIDATIVCERDSHKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK+G +K I A+ EI ++EQ V+L L+VKV+K+W Sbjct: 244 IGKSGAMLKKIGSAARFEIERMMEQQVNLKLWVKVRKEW 282 >gi|257879930|ref|ZP_05659583.1| GTP-binding protein Era [Enterococcus faecium 1,230,933] gi|257814158|gb|EEV42916.1| GTP-binding protein Era [Enterococcus faecium 1,230,933] Length = 299 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 166/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++G+ + E+Q++F+DTPGI Sbjct: 5 KSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ +++ +K D V ++ + ++ +++ + S + LI+NKI Sbjct: 65 HKPKHRLGDFMVEAAYTALKEVDAVLFMISADQKRGRGDDFIIERLKNVHSPVYLIINKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ LL E + + + +SAT+G+ + +++ L S +P P + DQ++D Sbjct: 125 DKIHPDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ E+P+S VV + + ++ I I+ I VER SQK I++ Sbjct: 185 HPEYFIVSELIREKVLFLTRDEVPHSVAVVVDSMKRNENDKIHIQATIIVERDSQKGIII 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K + +A+K+I +L V L L+VKVQKDW Sbjct: 245 GKGGKMLKQVGTKARKDIENLLGDKVFLELWVKVQKDW 282 >gi|167767681|ref|ZP_02439734.1| hypothetical protein CLOSS21_02216 [Clostridium sp. SS2/1] gi|167710698|gb|EDS21277.1| hypothetical protein CLOSS21_02216 [Clostridium sp. SS2/1] gi|291560815|emb|CBL39615.1| GTP-binding protein Era [butyrate-producing bacterium SSC/2] Length = 301 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 162/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +G N GKSTL+NR +G K++I + K QTTR+ ++ + +++ QI+FLDTPGI Sbjct: 6 KSGFVTFIGRPNVGKSTLMNRLIGQKIAITSSKPQTTRNRIQTVYTDERGQIIFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ M++++ T+ D+V +V+ + ++++++K + +IL++NKI Sbjct: 66 NKAKNKLGNYMLQVAERTLNEVDVVLWLVEPSTFIGGGEKYIIEQLSKIKTPIILVINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V+ + +LE + + + VSA KG DDV++ + L P + D I+D Sbjct: 126 DTVEEKDILEAIDTYKDVCEFAEIIPVSALKGKNTDDVIDSIYKYLDEGPMYFDEDTITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ REK L +EIP+ VV + + ++ G I+ I I ER S K I+ Sbjct: 186 QPERQICAELIREKALRLLSQEIPHGIAVVIDAMKVRRHGHIVDIDATIVCERDSHKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I +A+ E+ +L+ V+L L+VKV+KDW Sbjct: 246 IGKQGSMLKKIGTQARIEMENLLDMKVNLQLWVKVKKDW 284 >gi|123966675|ref|YP_001011756.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9515] gi|123201041|gb|ABM72649.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9515] Length = 303 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 168/288 (58%), Gaps = 9/288 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N +SG V L+G N GKSTL+N+ +G K++I + QTTR+ ++GI++ + QI+F+DT Sbjct: 2 NNYKSGFVTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNRLKGILTTEFGQIIFVDT 61 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ +++++ + S IK D+V LV+DS E + + + I++L Sbjct: 62 PGVHKPHHLLGEILVKNAKSAIKGVDMVILVLDSSVEPGRGDEYIKDFLVSNKTEFIIVL 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D V E + + K+ K+F VSA++G+GC +++N + + LP P +Y D Sbjct: 122 NKWDLVNKEFKSLRLDQYRKVFGTSKSFQTVSASEGYGCSELINIILNFLPKGPMLYEED 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE------KKDGSILIRQVIYV 250 I D P+ + A++ RE++ ++ +E+P+S V EK +E KK +IL I V Sbjct: 182 TICDQPLDNLLADLIREQVLINTREEVPHSVAVKIEKIKEINRDNGKKFTAIL--ATIIV 239 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ER SQK I++GK G +KTI A+ + +++ VHL LFVKV +W Sbjct: 240 ERTSQKGILIGKKGSMLKTIGQTARSNMKKLINGSVHLELFVKVIPNW 287 >gi|298530546|ref|ZP_07017948.1| GTP-binding protein Era [Desulfonatronospira thiodismutans ASO3-1] gi|298509920|gb|EFI33824.1| GTP-binding protein Era [Desulfonatronospira thiodismutans ASO3-1] Length = 303 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 111/294 (37%), Positives = 169/294 (57%), Gaps = 11/294 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D G ALVG NAGKSTL+N VG KV+IVT K QTTR+ + GI+S Q+VF+D Sbjct: 5 KDTHLFGTAALVGPPNAGKSTLMNTLVGEKVAIVTPKAQTTRNRISGILSTDRYQVVFMD 64 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE----IAKR--- 129 TPG+ A+ +L+ R + + AD+V LVVD+ EL V LK+ KR Sbjct: 65 TPGVNKARGKLGELLNRSAMEGLNSADVVLLVVDT--ELYVRKPHFLKKDFQPFKKRVSG 122 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPL 188 S ++++ NKID V+ ++ + +F E+ + VSA+ G G + +L + + Sbjct: 123 LSGVVVVSNKIDKVRDKKKVLPVWQELSRMFPEREILPVSASTGEGTEILLERILEHMHP 182 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P +Y DQ+S LPM AEI REKLFL + +E+PY V E W+E++D + I VI Sbjct: 183 GPALYPEDQLSTLPMRFMVAEIIREKLFLAMRQEVPYGLAVEIEYWKEQED-LLHISAVI 241 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 YV R + K +++G+ G+ +K + ++A+ E + + V+L VKV+ W +P Sbjct: 242 YVLRDAHKSMVIGRGGEVLKKVGMQARLEAEALSGKRVYLETHVKVRPGWDENP 295 >gi|258647984|ref|ZP_05735453.1| GTP-binding protein Era [Prevotella tannerae ATCC 51259] gi|260851825|gb|EEX71694.1| GTP-binding protein Era [Prevotella tannerae ATCC 51259] Length = 293 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 109/288 (37%), Positives = 163/288 (56%), Gaps = 8/288 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N FVG ++SI T K QTTR + GIV++ ++QI+F DTPG+ Sbjct: 2 KSGFVNIVGNPNVGKSTLMNLFVGERISIATFKAQTTRHRILGIVNKPDAQIIFSDTPGV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ S S + ADI+ V D + + N + L+++A + +++++NKI Sbjct: 62 LKPNYKMQKAMLTFSESALTDADILLYVTDVIEDQEKN-KEFLEKVAVANVPVLVLINKI 120 Query: 141 DCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D E+L++Q + +L E +SA D VL + + LP P + DQ Sbjct: 121 DLSSQKEVEQLIKQWQ--ERLPKAE-IIPLSAKAKFNTDTVLQRIEALLPEGPAYFEKDQ 177 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +D F EI REK+ L+ KEIPYS VV E ++E I I VIYVER SQK Sbjct: 178 WTDKSARFFVTEIIREKILLYYAKEIPYSVEVVVELFKEDAK-KIHINAVIYVERESQKG 236 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++G G +K +S EA+K + + ++L +FVKV KDW ++ + Sbjct: 237 IIIGHKGIALKKVSTEARKALERFFNKSIYLEVFVKVNKDWRNNERAL 284 >gi|282850278|ref|ZP_06259657.1| GTP-binding protein Era [Veillonella parvula ATCC 17745] gi|282579771|gb|EFB85175.1| GTP-binding protein Era [Veillonella parvula ATCC 17745] Length = 299 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 156/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++IV+ K QTTR+ + + +++ QIVF+DTPG+ Sbjct: 8 KSGFVAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMDTPGV 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + ++K + V VV + + + +++++ + + L++NKI Sbjct: 68 HKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +K E LLE +SA ++L L TLP P + D I+D Sbjct: 128 DTLKKEELLEAIVSYQDAYPFAGVIPISAKDKENLSEILKVLEETLPEGPQYFPEDMITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P ++I REK+ L EIP++ V ++ + + DG+ IR IY ER SQK I++ Sbjct: 188 QPERLIISDIVREKILLATRDEIPHAIAVDVDEMKTRDDGTTYIRATIYCERDSQKGIII 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + EA+ +I ++L V+L L+VKV+KDW Sbjct: 248 GKKGALLKQLGAEARADIQKLLATKVYLDLWVKVKKDW 285 >gi|269798051|ref|YP_003311951.1| GTP-binding protein Era [Veillonella parvula DSM 2008] gi|269094680|gb|ACZ24671.1| GTP-binding protein Era [Veillonella parvula DSM 2008] Length = 299 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 156/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++IV+ K QTTR+ + + +++ QIVF+DTPG+ Sbjct: 8 KSGFVAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMDTPGV 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + ++K + V VV + + + +++++ + + L++NKI Sbjct: 68 HKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +K E LLE +SA ++L L TLP P + D I+D Sbjct: 128 DTLKKEELLEAIVSYQDAYPFAGVIPISAKDKENLSEILKVLEETLPEGPQYFPEDMITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P ++I REK+ L EIP++ V ++ + + DG+ IR IY ER SQK I++ Sbjct: 188 QPERLIISDIVREKILLATRDEIPHAIAVDVDEMKTRDDGTTYIRATIYCERDSQKGIII 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + EA+ +I ++L V+L L+VKV+KDW Sbjct: 248 GKKGALLKQLGAEARADIQKLLATKVYLDLWVKVKKDW 285 >gi|300173398|ref|YP_003772564.1| GTP-binding protein era [Leuconostoc gasicomitatum LMG 18811] gi|299887777|emb|CBL91745.1| GTP-binding protein era [Leuconostoc gasicomitatum LMG 18811] Length = 303 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 164/289 (56%), Gaps = 6/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+NR VG K++I++ K QTTR+ ++GI + +Q+VF+DTPGI Sbjct: 7 KSGFVTIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDSAQVVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 ++S M++ ++S + AD + VVD+ I + LKEI +++ + L++ Sbjct: 67 HKPQNSLGDFMVKSAFSALHGADAIWFVVDASMPRGRGDDFIINRLKEI--KNTAIYLLI 124 Query: 138 NKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D + P+ LL A + F +SA +G ++L+ + + L P + AD Sbjct: 125 NKVDLLAPKDLLNVIASYQEDAPEWAEVFPISAREGDNVSELLDNVVAGLDEGPQYFDAD 184 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q++D P E+ REK+ +E+P+S VV +K + + I I+ I VERP+QK Sbjct: 185 QLTDHPERFVIGELIREKVLQLTRQEVPHSVAVVIDKISRESEEKIHIQASIVVERPTQK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G IK I A+K+I ++ V L +VKV+ W P+ Sbjct: 245 NIIIGKQGTMIKEIGTRARKDIERLMGDKVFLETWVKVEPRWRERPQAL 293 >gi|253567261|ref|ZP_04844711.1| GTP-binding protein Era [Bacteroides sp. 3_2_5] gi|265767859|ref|ZP_06095391.1| GTP-binding protein Era [Bacteroides sp. 2_1_16] gi|251944092|gb|EES84611.1| GTP-binding protein Era [Bacteroides sp. 3_2_5] gi|263252531|gb|EEZ24059.1| GTP-binding protein Era [Bacteroides sp. 2_1_16] Length = 293 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 160/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D N ++ ++++ ++S+ ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALADADVLLYVTDVIETPDKN-NEFIQKVRQQSAPILLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L++ E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLTDQEKLVKLVEEWKELLPQAEIIPISAATKFNVDYVMKRIKDLLPDSPPYFDKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E I I VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEEFKEDA-KKIHIHAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + V L +VKV KDW Sbjct: 241 GKQGKALKKVATEARRDLERFFGKTVFLETYVKVDKDW 278 >gi|53715372|ref|YP_101364.1| GTP-binding protein Era [Bacteroides fragilis YCH46] gi|52218237|dbj|BAD50830.1| putative GTP-binding protein [Bacteroides fragilis YCH46] Length = 293 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 160/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D N ++ ++++ ++S+ ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALADADVLLYVTDVIETPDKN-NEFIQKVRQQSAPILLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L++ E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLTDQEKLVKLVEGWKELLPQAEIIPISAATKFNVDYVMKRIKDLLPDSPPYFDKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E I I VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEEFKEDA-KKIHIHAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + V L +VKV KDW Sbjct: 241 GKQGKALKKVATEARRDLERFFGKTVFLETYVKVDKDW 278 >gi|331701380|ref|YP_004398339.1| GTP-binding protein Era-like-protein [Lactobacillus buchneri NRRL B-30929] gi|329128723|gb|AEB73276.1| GTP-binding protein Era-like-protein [Lactobacillus buchneri NRRL B-30929] Length = 300 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 163/280 (58%), Gaps = 7/280 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG +A+VG N GKST +NR +G K++I++ K QTTR+ ++G+ + KE+QIVF+DTPGI Sbjct: 8 SGFIAIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTKEAQIVFIDTPGIH 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDS--HRELKVN-IHDLLKEIAKRSSRLILILN 138 ++ M+ + S +K D V +V++ HR N I D LK + K + L++N Sbjct: 68 KPQNKLGDFMMESALSALKEVDAVLFMVNATEHRGAGDNFIIDQLKNVDK---PIYLLIN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + P+ ++ E + + + +SA +G+ ++++ L LP P Y AD++ Sbjct: 125 KIDEISPDDIMPIIEQYKNALEFKDVYPISALQGNNVPELIDTLIKELPNGPQYYPADEV 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P +E+ REK+ +EIP+S+ VV E + +D + IR I VER QK I Sbjct: 185 TDHPERFVISELIREKVLELTRQEIPHSTAVVIESI-KTEDSLLRIRATIIVERDGQKGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+K+I ++ V L L+VKV+ W Sbjct: 244 VIGKGGSMLKKIGTLARKDIENMMGNKVFLELWVKVEPHW 283 >gi|60683340|ref|YP_213484.1| GTP-binding protein Era [Bacteroides fragilis NCTC 9343] gi|60494774|emb|CAH09580.1| putative GTP-binding protein (cell growth-related) [Bacteroides fragilis NCTC 9343] gi|301164829|emb|CBW24389.1| putative GTP-binding protein (cell growth-related) [Bacteroides fragilis 638R] Length = 305 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 160/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 15 KAGFVNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 74 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D N ++ ++++ ++S+ ++L++NKI Sbjct: 75 LKPNYKLQESMLNFSTSALADADVLLYVTDVIETPDKN-NEFIQKVRQQSAPILLLINKI 133 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L++ E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 134 DLTDQEKLVKLVEEWKELLPQAEIIPISAATKFNVDYVMKRIKDLLPDSPPYFDKDQWTD 193 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E I I VIYVER SQK I++ Sbjct: 194 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEEFKEDA-KKIHIHAVIYVERDSQKGIII 252 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++++ + V L +VKV KDW Sbjct: 253 GKQGKALKKVATEARRDLERFFGKTVFLETYVKVDKDW 290 >gi|329924033|ref|ZP_08279296.1| ribosome biogenesis GTPase Era [Paenibacillus sp. HGF5] gi|328940872|gb|EGG37180.1| ribosome biogenesis GTPase Era [Paenibacillus sp. HGF5] Length = 290 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 158/274 (57%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL+N+ +G K++I++ K QTTR+ + G+ + +SQ+VFLDTPGI + Sbjct: 1 MAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTSDSQVVFLDTPGIHKRQ 60 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 M + + ST+ + +VD+ + + +++ K + +IL++NKID ++ Sbjct: 61 SKLGDYMNQTALSTLGEVEAALFLVDASEGIGGGDRYIAEQLQKIKTPIILVMNKIDKIE 120 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 P LL E KL + +SA G + +L + LP P Y DQ++D P Sbjct: 121 PPALLPLIEQYRKLHDFAEIVPISAKLGSNVNTLLEQIQKYLPPGPQYYPEDQVTDHPEQ 180 Query: 205 HFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNG 264 AE+ REK+ +E+P+S V E +++G++ I VI+VER SQK I++GK G Sbjct: 181 FVCAELIREKILHMTREEVPHSIAVTIEDMRVEENGTVYISAVIFVERDSQKGIIIGKQG 240 Query: 265 QNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +K + +A+++I +L + L L+VKV+KDW Sbjct: 241 ALLKEVGRQARQDIQRLLGSKIFLELWVKVKKDW 274 >gi|297794363|ref|XP_002865066.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297310901|gb|EFH41325.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] Length = 427 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 102/287 (35%), Positives = 166/287 (57%), Gaps = 9/287 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL N+ +G K+SIVT K QTTR + GI S E Q++ DTPG+ Sbjct: 128 RSGYVAVLGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGV 187 Query: 81 FNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE---IAKRSSRLI 134 K H+L M++ +AD V ++VD+ + I ++LKE ++ ++ Sbjct: 188 IEKK--MHRLDTMMMKNVRDAAINADCVVILVDACK-TPTYIEEVLKEGLGNLEKKPPML 244 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 L++NK D +KP + ++ E K +++ VSA GHG +DV ++ S LP P Y Sbjct: 245 LVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGIEDVKEWILSKLPFGPPYYP 304 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D +S+ P F +EI REK+F+ E+PY+ V ++ + I+ + V++ S Sbjct: 305 KDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFIQVEVVVDKNS 364 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G+ +KT++ A+ +I + L++ V L + VKV+++W D Sbjct: 365 QKIILIGKEGKALKTLATAARLDIEDFLQKKVFLEVEVKVKENWRQD 411 >gi|313893315|ref|ZP_07826890.1| ribosome biogenesis GTPase Era [Veillonella sp. oral taxon 158 str. F0412] gi|313442211|gb|EFR60628.1| ribosome biogenesis GTPase Era [Veillonella sp. oral taxon 158 str. F0412] Length = 299 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 156/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++IV+ K QTTR+ + + +++ QIVF+DTPG+ Sbjct: 8 KSGFVAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMDTPGV 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + ++K + V VV + + + +++++ + + L++NKI Sbjct: 68 HKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLQRVKVPVFLVVNKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +K E LLE +SA ++L L TLP P + D I+D Sbjct: 128 DTLKKEELLEAIVSYQNAYPFAGVIPISAKDKENLPEILKVLEETLPEGPQYFPEDMITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P ++I REK+ L EIP++ V ++ + + DG+ IR IY ER SQK I++ Sbjct: 188 QPERLIISDIVREKILLATRDEIPHAIAVDVDEMKTRDDGTTYIRATIYCERDSQKGIII 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + EA+ +I ++L V+L L+VKV+KDW Sbjct: 248 GKKGALLKQLGAEARADIQKLLATKVYLDLWVKVKKDW 285 >gi|120437318|ref|YP_863004.1| GTP-binding protein Era [Gramella forsetii KT0803] gi|117579468|emb|CAL67937.1| GTP-binding protein Era [Gramella forsetii KT0803] Length = 295 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 159/282 (56%), Gaps = 4/282 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N F+G ++SI+T K QTTR + GIV+ ++ Q++ DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNAFIGERLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 M+ S + AD++ +V+ E + +I+ ++L+LNKI Sbjct: 64 IKPAYELQASMMDFVKSAFEDADVLIYIVEIGEE-GLKDEAFFNKISNSEVPVLLLLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L EQ + + V + +SA +G V N + LP +P Y D ++D Sbjct: 123 DKSNQEQLEEQVQYWAEKVPTAEIHPISALEGFNVPAVFNRIIELLPESPAFYPKDTLTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVT-EKWEEKKDGSILIRQVIYVERPSQKKIM 259 P F EI REK+ +H KEIPYS + T E +EE+K I +R +I VER +QK I+ Sbjct: 183 KPERFFVNEIIREKILMHYKKEIPYSVEIETNEFFEEEK--IIRMRSIIMVERDTQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G G +K + +EA+K++ + + VHL L+VKV K+W D Sbjct: 241 IGHKGAALKRVGVEARKDLEKFFGKQVHLELYVKVNKNWRSD 282 >gi|312190415|gb|ADQ43214.1| GTP binding protein [Eutrema parvulum] Length = 426 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 166/291 (57%), Gaps = 11/291 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + VA+VG N GKSTL N+ +G K+SIVT K QTTR + GI S E Q++ DT Sbjct: 124 DTNHRSYVAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILFDT 183 Query: 78 PGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE----IAKRS 130 PG+ K H+L M++ +AD V ++VD+ + I ++LKE + KR Sbjct: 184 PGVIEKK--MHRLDTMMMKNVRDAAINADCVVILVDACK-TPAKIEEVLKEGLGDLEKRP 240 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++L++NK D +KP + ++ E K +++ VSA GHG +DV ++ S LP P Sbjct: 241 P-MLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGIEDVKEWILSKLPFGP 299 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 Y D +S+ P F AEI REK+F+ E+PY+ V ++ + I+ + V Sbjct: 300 PYYPKDIVSEHPERFFVAEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFIQVEVVV 359 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ++ SQK I++GK G+ +KT++ A+ +I + L++ V L + VKV+++W D Sbjct: 360 DKNSQKIILIGKEGKALKTLATAARLDIEDFLQKKVFLEVDVKVKENWRQD 410 >gi|331091567|ref|ZP_08340404.1| GTP-binding protein Era [Lachnospiraceae bacterium 2_1_46FAA] gi|330403732|gb|EGG83286.1| GTP-binding protein Era [Lachnospiraceae bacterium 2_1_46FAA] Length = 298 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 159/280 (56%), Gaps = 1/280 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + +SG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ ++ Q+VF+DTP Sbjct: 4 DYKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEQGQVVFVDTP 63 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI AK+ + M+ ++ T+ D+V +V+ + + +++ + + +IL++N Sbjct: 64 GIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIAEQLKRVKTPVILVIN 123 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D VK + + + K+ VSA G +++L L LP P Y D + Sbjct: 124 KVDMVKKDEVFAFIDAYQKIYDFAAIVPVSAKNGENTEELLKVLFQYLPYGPQFYDEDTV 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P AEI REK L++EIP+ V EK + K+ + I I ER S K I Sbjct: 184 TDQPQRQIVAEIIREKALHALNEEIPHGIAVSIEKMQFKRK-IVEIEATIICERDSHKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+ EI ++LE V+L L+VKV+KDW Sbjct: 243 IIGKQGSMLKKIGTNARYEIEKMLEMQVNLKLWVKVKKDW 282 >gi|255030306|ref|ZP_05302257.1| GTP-binding protein Era [Listeria monocytogenes LO28] Length = 285 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 93/268 (34%), Positives = 156/268 (58%), Gaps = 1/268 (0%) Query: 32 NAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLM 91 N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI K M Sbjct: 1 NVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPKHKLGDFM 60 Query: 92 IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQ 151 ++++ +T + D++ V+D+ +++++ + + L++NKID + PE L + Sbjct: 61 VKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKIDLIAPEDLFKL 120 Query: 152 AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEIT 211 E L+ ++ +SA +G+ ++L + L + P Y DQI+D P +E+ Sbjct: 121 IEQYRDLMDFDEIIPISALQGNNVPNLLEQTNANLEIGPMYYPKDQITDHPERFIISELI 180 Query: 212 REKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTI 270 RE++ +E+P+S VV E E+ K + I I VER +QK I++GK GQ +K I Sbjct: 181 REQVLQLTREEVPHSVAVVIEGIEKNPKTEKLTINATIIVERSTQKGIIIGKQGQMLKQI 240 Query: 271 SLEAKKEIAEILEQPVHLILFVKVQKDW 298 + A+KEI +L V L ++VKVQK+W Sbjct: 241 GMRARKEIERLLGSKVFLEIWVKVQKNW 268 >gi|6015115|sp|O82626|ERG_ANTMA RecName: Full=GTP-binding protein ERG gi|3676069|emb|CAA76925.1| ERG protein [Antirrhinum majus] Length = 423 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 161/286 (56%), Gaps = 11/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +S V ++GA NAGKS L N VG KVS V+ K TT V G+++++++QI F DTPG+ Sbjct: 138 KSLSVGIIGAPNAGKSALTNYIVGTKVSAVSRKTNTTTHEVLGVLTKRDTQICFFDTPGL 197 Query: 81 FNAKDS--YHKLMIR--LSWSTIKHADIVCLVVDSHRELK------VNIHDLLKEIAKRS 130 K Y+ + +R WS+I D++ ++ D HR L V + + + ++ S Sbjct: 198 MLKKSGIPYNDIKVRNESGWSSITLYDVLIVIFDVHRHLTRPDSRVVRLIERVGSVSSTS 257 Query: 131 SRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + +L +NK+D V K L++ A+ L E+ FMVS KG+G D+ YL Sbjct: 258 QKRVLCMNKVDLVTKKNDLVKVAKEFKDLPGYERHFMVSGLKGYGLKDLAQYLTEQAVKR 317 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 PW +S+ M + + E+ REKL ++H+EIPY W+E +DGS+ I Q Sbjct: 318 PWDEDPFAMSEEVMKNISLEVVREKLLDYVHQEIPYGIEHRLMGWKELRDGSLRIEQHFI 377 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 + SQ+KI++GK G I TI +EA +E+ I ++ VHLIL VKV+ Sbjct: 378 TPKMSQRKILVGKKGSKIGTIGIEANEELRSIFKRNVHLILMVKVK 423 >gi|253580801|ref|ZP_04858064.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847871|gb|EES75838.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 302 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 156/285 (54%), Gaps = 2/285 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + +N +SG VA++G N GKSTL+N +G K++I + K QTTR+ ++ + + E QIVFL Sbjct: 1 MNENFKSGFVAIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCDEGQIVFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M++++ T+K D + +V+ + + +++ +IL Sbjct: 61 DTPGIHKAKNKLGEYMVQVAERTLKEVDAIMWLVEPSTFIGAGERHIAEQLQGIGVPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 I+NKID V E +L + K+ + SA +G D++ + LP P Y Sbjct: 121 IINKIDTVSKEEILPAIDTYRKVCDFAEIIPCSALRGQNTQDIIGCILKYLPYGPMFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK--KDGSILIRQVIYVERP 253 D ++D P AEI REK L EIP+ V ++ + + K+ + I I ER Sbjct: 181 DTVTDQPQRQIVAEIIREKALHALDAEIPHGIAVAIDRMKTRPGKNPIVDIDATIICERE 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GK G +K I A+ EI +LE V+L L+VKV+KDW Sbjct: 241 SHKGIIIGKQGAMLKKIGSNARYEIERMLESKVNLKLWVKVKKDW 285 >gi|164686279|ref|ZP_02210309.1| hypothetical protein CLOBAR_02717 [Clostridium bartlettii DSM 16795] gi|164601881|gb|EDQ95346.1| hypothetical protein CLOBAR_02717 [Clostridium bartlettii DSM 16795] Length = 296 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 167/279 (59%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N VG K++I++ K QTTR+ ++ + +++E QIVFLDTPGI Sbjct: 3 KSGFVSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEECQIVFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ + M++ + K+ D+V VVD +++ +++++ + +IL+LNKI Sbjct: 63 HKPKNKLGEFMVKSATDAFKNVDLVLFVVDDSKKIGPGDRKIIEDLRGIKTPVILVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++ L E ++ + + +SA KG +++L + + L P + I+D Sbjct: 123 DKLEESELFELMQLYSNEDLFKAIVPISALKGRNVNELLKVIGNYLQEGPKYFPDYMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P +E+ REK+ +L+ E+P+ V E+ + ++D I+ I VIY ER S K I+ Sbjct: 183 QPERVLVSELIREKVLHYLNDEVPHGVAVEVERMKSRQDKDIVDISAVIYCERDSHKGII 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNG+ +K I A++++ +L ++L L+VKV+++W Sbjct: 243 IGKNGRKLKGIGKSAREDMELLLGSKINLQLWVKVKENW 281 >gi|255282513|ref|ZP_05347068.1| GTP-binding protein Era [Bryantella formatexigens DSM 14469] gi|255266806|gb|EET60011.1| GTP-binding protein Era [Bryantella formatexigens DSM 14469] Length = 310 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 159/291 (54%), Gaps = 3/291 (1%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 NE K+ ++SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + + Sbjct: 5 LNELKN--NGGTKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNRIQTVYTCD 62 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 QIVFLDTPGI AK+ + M+ ++ T+ D++ +V+ + +++++ K Sbjct: 63 RGQIVFLDTPGIHRAKNKLGEYMVNVAERTLSEVDVILWLVEPTTFIGAGEQHIVQQLKK 122 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++LI+NKID V+ + + + K+ SA +G ++++ + LP Sbjct: 123 VKQPVVLIINKIDTVQKTEVAKFIDAYRKIYNFADIIAASALRGQNLQEIIDVIFKYLPY 182 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQV 247 P Y D I+D P AE+ REK L +EIP+ V ++ E++DG + I Sbjct: 183 GPMFYDEDTITDQPQRQIVAEMIREKALRCLDEEIPHGIAVAIDRMTEREDGGMFDIDAT 242 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I ER S K I++GK G +K I A+ +I +LE V+L L+VKV+KDW Sbjct: 243 IICERDSHKGIIIGKGGAMLKKIGSAARTDIENMLEARVNLKLWVKVKKDW 293 >gi|290769994|gb|ADD61761.1| putative protein [uncultured organism] Length = 322 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 164/282 (58%), Gaps = 3/282 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++G V +G N GKSTL+N+ +G K++I ++K QTTR+ ++ + +++ QIVF+DTPG Sbjct: 23 TKTGFVTFIGRPNVGKSTLMNQIIGQKIAITSNKPQTTRNRIQTVYTDERGQIVFVDTPG 82 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I AK+ + M+ + TI D++C +V+ L +++++ + + ++L++NK Sbjct: 83 IHKAKNKLGEYMVGAAEKTISEVDLICWLVEPTTHLGAAEEHIVEKLKECKTPIVLVINK 142 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K E +L + K + V A G+ DD+L+ + S L P Y D ++ Sbjct: 143 TDTIKKEEILPVIDCYRKELDFVDIVPVCARNGNNVDDLLDVIFSHLDYGPMYYDEDTVT 202 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--GSIL-IRQVIYVERPSQK 256 D PM AE+ REK L+ EIP+ VV + ++E+++ G I I I ER S K Sbjct: 203 DQPMKQIVAELIREKALHALNDEIPHGIAVVIDSFKERRNARGPITDIDATIICERDSHK 262 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K I A+ EI + L+ V+L L+VKV+K+W Sbjct: 263 GIIIGKGGEMLKKIGTNARYEIEKQLDMKVNLKLWVKVKKEW 304 >gi|259503181|ref|ZP_05746083.1| GTP-binding protein Era [Lactobacillus antri DSM 16041] gi|259168838|gb|EEW53333.1| GTP-binding protein Era [Lactobacillus antri DSM 16041] Length = 301 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 102/281 (36%), Positives = 158/281 (56%), Gaps = 2/281 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VAL+G N GKSTL+N VG KV+I+++ QTTR+ ++GI + K++QI+F+DTP Sbjct: 5 NYKSGFVALIGRPNVGKSTLLNYIVGQKVAIMSNVAQTTRNKIQGIYTSKDAQIIFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ M R + S + D + VV + + + ++ + + + L++N Sbjct: 65 GVHKPATKLGDFMERSTLSALDEVDAIVYVVSATEKRGPGDNFIIDRLKQVKQPVYLVVN 124 Query: 139 KIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V P L + A+ + L F + VSA +G+ ++++N L + LP P Y ADQ Sbjct: 125 KIDQVHPNDLPDIVAQYKDALPF-KGIIPVSALQGNNVNELINELVAGLPHGPQYYPADQ 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ISD P AE+ REK+F+ E+P+S V + + + I I VERP QK Sbjct: 184 ISDHPERFVIAEMIREKVFMLTRDEVPHSVAVDVTSIQREDAEHVHISANIVVERPGQKG 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK GQ +K I A+++I +L V L L+VKV W Sbjct: 244 IIIGKKGQMLKKIGTMARQDIERLLGDRVFLQLWVKVVPKW 284 >gi|293376339|ref|ZP_06622576.1| GTP-binding protein Era [Turicibacter sanguinis PC909] gi|325843413|ref|ZP_08167971.1| ribosome biogenesis GTPase Era [Turicibacter sp. HGF1] gi|292645028|gb|EFF63101.1| GTP-binding protein Era [Turicibacter sanguinis PC909] gi|325489335|gb|EGC91709.1| ribosome biogenesis GTPase Era [Turicibacter sp. HGF1] Length = 302 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 162/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +N+ +G K++I++ K QTTR+ ++G++++ +SQ +F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNQVLGKKIAIMSDKPQTTRNKIQGVITDADSQTIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K K M L+ T+ D V +V++ ++ +++ + + L++NKI Sbjct: 67 HKPKHELGKFMTDLAIGTLNEVDAVMFMVNATEKVGKGDRFIIEHLQNVKQPVFLVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E LL + +SA G + +++ + LP P Y +D I+D Sbjct: 127 DLITKEELLTVIASFREEYNFAGIIPISAMTGENVETLISVIKEALPEGPQFYPSDYITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P +E+ REK+ H+E+P+S VV +K E+ + +++ + I VERPSQK I+ Sbjct: 187 HPERFIISELIREKVLHLTHEEVPHSVAVVIDKIEKVEGKNVIDVMATIVVERPSQKGIL 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G+ +K I A+K+I ++L ++L L+VKVQKDW Sbjct: 247 IGKGGKMLKDIGTLARKDIVKLLGTKIYLELWVKVQKDW 285 >gi|33866147|ref|NP_897706.1| GTP-binding protein Era [Synechococcus sp. WH 8102] gi|33639122|emb|CAE08128.1| GTP-binding protein ERA homolog [Synechococcus sp. WH 8102] Length = 311 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 164/293 (55%), Gaps = 9/293 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N RSG +AL+G N GKSTLVN+ VG KV+I + QTTR+ +R I++ +++Q+V +DT Sbjct: 8 ENHRSGFIALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAILTTEDAQMVLVDT 67 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI + +++ + S I D+V L+++ ++K + ++ +++ L Sbjct: 68 PGIHKPHHLLGERLVQSARSAIGEVDLVVLLLEGCERPGRGDAFIVKLLRQQPLPVLVAL 127 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYS 194 NK D + PE +AE A + E + + SA G GC + + + + LPL P +Y Sbjct: 128 NKWDKL-PEDRQAEAEAAYGELLKETAWPIHRCSALSGEGCSALSSAMAAQLPLGPQLYP 186 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-----KKDGSILIRQVIY 249 + +SD P E+ RE++ LH +EIP+S V ++ EE K G + + Sbjct: 187 PEMVSDQPERVLMGELIREQVLLHTREEIPHSVAVTIDRVEELPAGGKGGGRTAVLATVM 246 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 VER SQK I++GK G +KTI A+ ++ +++ PV+L LFVKV DW P Sbjct: 247 VERKSQKGILIGKGGAMLKTIGQGARLQMQTLIDGPVYLELFVKVVPDWRSKP 299 >gi|157413842|ref|YP_001484708.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9215] gi|157388417|gb|ABV51122.1| GTP-binding protein ERA [Prochlorococcus marinus str. MIT 9215] Length = 303 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 165/285 (57%), Gaps = 5/285 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG V L+G N GKSTL+N+ +G K++I + QTTR+ ++GI++ + QI+F+DTP Sbjct: 3 NYRSGFVTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTENGQIIFVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ +++++ + S I D+V V+DS +L + + I++LN Sbjct: 63 GVHKPHHRLGEILVKNAKSAINGVDMVIFVIDSSEAPGKGDEYILNFLIDNKIKFIVVLN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V E + + + + + F VSA++G GC ++++ + + LP P +Y + Sbjct: 123 KWDLVNKEFRNLRLDQYRRFFGMNRNFQSVSASQGQGCSELVDMVLNFLPEGPKLYGEET 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--KKDGSIL--IRQVIYVERP 253 I D P+ + +++ RE++ + +E+P+S V EK EE +K+G + I I VER Sbjct: 183 ICDQPLDNLLSDLVREQVLKNTREEVPHSVAVKIEKREEMKRKNGKVFTAILATIIVERS 242 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +QK I++GK G +K I A+ ++++++ PVHL LFVKV +W Sbjct: 243 TQKIILIGKKGSMLKMIGQSARSNMSKLIDGPVHLELFVKVVPNW 287 >gi|317499140|ref|ZP_07957417.1| GTP-binding protein Era [Lachnospiraceae bacterium 5_1_63FAA] gi|316893553|gb|EFV15758.1| GTP-binding protein Era [Lachnospiraceae bacterium 5_1_63FAA] Length = 301 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 162/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +G N GKSTL+NR +G K++I + K QTTR+ ++ + +++ QI+FLDTPGI Sbjct: 6 KSGFVTFIGRPNVGKSTLMNRLIGQKIAITSSKPQTTRNRIQTVYTDERGQIIFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ M++++ T+ D+V +V+ + ++++++K + +IL++NKI Sbjct: 66 NRAKNKLGNYMLQVAERTLNEVDVVLWLVEPSTFIGGGEKYIIEQLSKIKTPIILVINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V+ + +LE + + + VSA KG DDV++ + L P + D I+D Sbjct: 126 DTVEEKDILEAIDTYKDVCEFAEIIPVSALKGKNTDDVIDSIYKYLDEGPMYFDEDTITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ REK L +EIP+ VV + + ++ G I+ I I ER S K I+ Sbjct: 186 QPERQICAELIREKALRLLSQEIPHGIAVVIDAMKVRRHGHIVDIDATIVCERDSHKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I +A+ E+ +L+ V+L L+VKV+KDW Sbjct: 246 IGKQGFMLKKIGTQARIEMENLLDMKVNLQLWVKVKKDW 284 >gi|218262399|ref|ZP_03476879.1| hypothetical protein PRABACTJOHN_02554 [Parabacteroides johnsonii DSM 18315] gi|218223402|gb|EEC96052.1| hypothetical protein PRABACTJOHN_02554 [Parabacteroides johnsonii DSM 18315] Length = 296 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 162/283 (57%), Gaps = 2/283 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++ +SG V +VG N GKSTL+NR VG ++SI+T K QTTR + GIV+ + QIV+ Sbjct: 1 MENKHKSGFVNIVGNPNVGKSTLMNRLVGERISIITSKAQTTRHRIIGIVNTADMQIVYS 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPG+ + + M+ S S + AD++ V D ++ N + L+++ K ++L Sbjct: 61 DTPGVLHPNYKLQESMLNFSQSALGDADVLLYVTDVVEKIDKN-EEFLQKVQKVECPVLL 119 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID + L + +L+ + +SA D V + +P +P + Sbjct: 120 LINKIDTTTQQELEKLVAEWKELLPKAEIIPISALSNFNIDYVKRRVEDLMPESPPYFEK 179 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P F EI REK+ L+ KEIPY+ VV E ++E+ + I I+ ++ VER SQ Sbjct: 180 DALTDKPARFFVTEIIREKILLYYQKEIPYAVEVVVELFKEEAE-LIHIKALVIVERDSQ 238 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G GQ +K + A+K+I ++ V L +FVKV+KDW Sbjct: 239 KGIIIGHRGQALKKVGAMARKDIERFFDKKVFLEMFVKVEKDW 281 >gi|330752120|emb|CBL87081.1| GTP-binding protein era homolog [uncultured Flavobacteria bacterium] Length = 301 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 155/279 (55%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N +VG ++SI+T K QTTR + GI++ + Q+V DTPG+ Sbjct: 12 KSGFVTIVGNPNVGKSTLMNAWVGERLSIITSKAQTTRHRILGIINGDDYQMVLSDTPGV 71 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ ++ ADI+ +V+ +E+K ++I L+L++NK Sbjct: 72 IKPIYEMQSSMMAFVKGALEDADILIYMVEIGEKEMKDAA--FFEKIKGSKIPLLLLINK 129 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID E L+ +++ + + F +SA G +VL+Y+ LP P Y DQ++ Sbjct: 130 IDTADQETLMTTIAFWKEMLPMAEVFPISAITGFSVKEVLDYIIDKLPEGPAYYPKDQLT 189 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F E RE++ + KEIPYS V TE + E +D I IR VI VER +QK I+ Sbjct: 190 DKPERFFVNEAIREQILQYYSKEIPYSVEVDTEDFFE-EDKIIKIRSVIMVERDTQKGII 248 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G +K + + A+K + + VHL L+VKV KDW Sbjct: 249 IGHKGTALKRVGVGARKTLQAFFGKKVHLELYVKVNKDW 287 >gi|300770940|ref|ZP_07080817.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33861] gi|300762213|gb|EFK59032.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33861] Length = 292 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 163/278 (58%), Gaps = 3/278 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V+++G NAGKSTL+N VG K+SI+T K QTTR + GIV+++ QIVF DTPG+ Sbjct: 4 KAGFVSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRIMGIVNDENHQIVFSDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 S + M+ ++ ADI+ V D + + N D+++++ K SS + +++NKI Sbjct: 64 IKPNYSLQESMMNFVQGSLIDADIILFVTDINEKYDEN--DVIEKLRKTSSPVAVLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E + + E + + + F +SA H +++Y+ LP Y D+++D Sbjct: 122 DKSTEEDVKAKIEFWKEKLNPDTIFAISALHQHNVVAIMDYIKEKLPEHAPYYEKDELTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 M F +E+ REK+F KEIPYS+ V+ ++E+ + + ++I VER SQK I++ Sbjct: 182 KSMRFFVSEMIREKVFKLYDKEIPYSTEVIITSYKEEPKITRIAAEII-VERDSQKNILI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ IK + A+++I E + V L +FVKV DW Sbjct: 241 GKAGEMIKKVGTYARQDIEEFIGGKVFLEIFVKVIPDW 278 >gi|146329627|ref|YP_001209600.1| GTP-binding protein Era [Dichelobacter nodosus VCS1703A] gi|146233097|gb|ABQ14075.1| GTP-binding protein Era [Dichelobacter nodosus VCS1703A] Length = 299 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 104/287 (36%), Positives = 165/287 (57%), Gaps = 14/287 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+R+G +A+VG N GKSTL+N +G K++I + K QTTR + GI SE + Q+VF+DTP Sbjct: 2 NTRAGMIAVVGRPNVGKSTLINHLLGQKIAITSRKPQTTRQALLGIYSEDDVQMVFVDTP 61 Query: 79 GIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 GI + K + ++ M R +W ++ D++ V + R + + + EIA+ + ++ Sbjct: 62 GIHRDGKKAINRQMNRAAWQSMHDVDVILHVSEVKR-WEEDDARIAAEIAQMKVPAVHVV 120 Query: 138 NKIDCVK------PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 NKID +K PE L + IAN + VSA + +++L L LP P+ Sbjct: 121 NKIDRLKDKADLFPE-LQARQSIANWAAIVP----VSAARSQNLEELLRVLAPLLPEQPF 175 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y Q++ M AEI REKLF ++H+E+PY V+ E++ + ++ I I VE Sbjct: 176 LYDQSQVTTASMRFLAAEIVREKLFRYVHQEVPYELGVIIEQY-QLIGKTVHIDATILVE 234 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R SQK I++G G+ +K + A++E+ +ILEQ V L FVKV +W Sbjct: 235 RESQKGIVIGVGGKTLKAVGQAAREELEQILEQKVMLRNFVKVADNW 281 >gi|154494317|ref|ZP_02033637.1| hypothetical protein PARMER_03671 [Parabacteroides merdae ATCC 43184] gi|154085761|gb|EDN84806.1| hypothetical protein PARMER_03671 [Parabacteroides merdae ATCC 43184] Length = 296 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 164/293 (55%), Gaps = 22/293 (7%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++ +SG V +VG N GKSTL+NR VG ++SI+T K QTTR + GIV+ + QIV+ Sbjct: 1 MENKHKSGFVNIVGNPNVGKSTLMNRLVGERISIITSKAQTTRHRIIGIVNTADMQIVYS 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPG+ + + M+ S S + AD++ V D ++ N + L+++ K ++L Sbjct: 61 DTPGVLHPNYKLQESMLNFSQSALGDADVLLYVTDVVEKIDKN-EEFLQKVQKVECPVLL 119 Query: 136 ILNKID-CVKPE---------RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 ++NKID +PE LL +AEI +SA D V + Sbjct: 120 LINKIDTTTQPELEKLVAEWKELLPKAEI----------IPISALSNFNIDYVKRRVEDL 169 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 +P +P + D ++D P F EI REK+ L+ KEIPY+ VV E ++E+ + I I+ Sbjct: 170 MPESPPYFEKDALTDKPARFFVTEIIREKILLYYQKEIPYAVEVVVELFKEEAE-LIHIK 228 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +I VER SQK I++G GQ +K + A+K+I ++ V L +FVKV+KDW Sbjct: 229 ALIIVERDSQKGIIIGYRGQALKKVGAMARKDIERFFDKKVFLEMFVKVEKDW 281 >gi|170017070|ref|YP_001727989.1| GTP-binding protein Era [Leuconostoc citreum KM20] gi|226741222|sp|B1MYE3|ERA_LEUCK RecName: Full=GTPase Era gi|169803927|gb|ACA82545.1| GTP-binding protein Era [Leuconostoc citreum KM20] Length = 303 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/290 (34%), Positives = 165/290 (56%), Gaps = 8/290 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+NR VG K++I++ K QTTR+ ++GI + +Q+VF+DTPG+ Sbjct: 7 KSGFVAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDNAQVVFIDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 ++S M++ ++S + AD + VVD+ I L E+ + + + L++ Sbjct: 67 HKPQNSLGNFMVKSAFSALHEADAIWFVVDASMPRGRGDDFIISRLNEVTE--TPIYLLI 124 Query: 138 NKIDCVKPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK+D + E LL ++ + + E F +SAT+G ++L+ + S L P + A Sbjct: 125 NKVDLIAREELLAIIESYQVDAPTWTE-VFPISATEGDNVPELLDNVVSHLDEGPQYFDA 183 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ++D P E+ REK+ +E+P+S VV +K + + I I+ I VERP+Q Sbjct: 184 DQLTDHPERFVIGELIREKVLQLTRQEVPHSVAVVIDKIAREDEEKIHIQASIIVERPTQ 243 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++GK G IK I A+K+I ++ V L +VKV+ W P+ Sbjct: 244 KNIIIGKQGTMIKNIGTRARKDIERLMGDKVFLETWVKVEPRWRDRPQAL 293 >gi|126663305|ref|ZP_01734303.1| putative GTP-binding protein [Flavobacteria bacterium BAL38] gi|126624963|gb|EAZ95653.1| putative GTP-binding protein [Flavobacteria bacterium BAL38] Length = 294 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 101/279 (36%), Positives = 157/279 (56%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG ++SI+T K QTTR + GIV+ + Q++F DTPGI Sbjct: 4 KAGYVNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGDDFQVLFSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ S + ADI+ +V+ +ELK +I ++L+LNK Sbjct: 64 IKPAYELQNSMMDFVKSAFEDADILVYMVEIGEKELKD--EAFFNKIIHSKIPVLLLLNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID E+L EQ + + V + F +SA + V + + LP++P Y D ++ Sbjct: 122 IDKSNQEQLEEQVQAWKEKVPNAELFPISALENFNVQTVFDRIIELLPVSPAFYPKDALT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F E REK+ L+ KEIPY+ + TE++ E D I IR VI VER +QK I+ Sbjct: 182 DKPERFFVNETIREKILLNYDKEIPYAVEIETEEFIE-DDNIIRIRAVIMVERDTQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G +K + ++A++++ + + +HL +VKV KDW Sbjct: 241 IGHKGAALKRVGIQAREDLEKFFGKQIHLATYVKVNKDW 279 >gi|56751355|ref|YP_172056.1| GTP-binding protein Era [Synechococcus elongatus PCC 6301] gi|81298971|ref|YP_399179.1| GTP-binding protein Era [Synechococcus elongatus PCC 7942] gi|56686314|dbj|BAD79536.1| GTP-binding protein ERA homolog [Synechococcus elongatus PCC 6301] gi|81167852|gb|ABB56192.1| GTP-binding protein Era [Synechococcus elongatus PCC 7942] Length = 311 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 159/282 (56%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VAL+G N GKSTL+N VG K++I + QTTR+ +RG+++ + QIVF+DTPGI Sbjct: 16 RSGFVALIGRPNVGKSTLMNHLVGQKIAITSPVAQTTRNRLRGVLTTDQVQIVFVDTPGI 75 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + ++++ + S I+ D+V VVD + I + +L LNK+ Sbjct: 76 HKPQHQLGSVLVQNASSAIRIVDLVLFVVDGSVPAGRGDAFIADLIQRAGVPTVLGLNKV 135 Query: 141 DCVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D PE A++A + +TF SAT G G +L L L P+ Y D Sbjct: 136 DRQLPEDAEAIAASYAQLAGDRDWPLQTF--SATTGAGTGALLEQLTHALEPGPYYYPPD 193 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 I+D P AE+ RE++ L +E+P+S VV E+ EE + + ++ +I VERPSQK Sbjct: 194 LITDQPERFIMAELIREQILLQTREEVPHSVAVVIERVEEDEKITRIL-AMICVERPSQK 252 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I EA++++ ++++ ++L LFVKVQ W Sbjct: 253 AILIGKGGSMMKAIGSEARQQMQKLIDGKIYLELFVKVQPKW 294 >gi|227513295|ref|ZP_03943344.1| GTP-binding protein Era [Lactobacillus buchneri ATCC 11577] gi|227083496|gb|EEI18808.1| GTP-binding protein Era [Lactobacillus buchneri ATCC 11577] Length = 300 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 161/283 (56%), Gaps = 7/283 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG VA+VG N GKST +NR V K++I++ K QTTR+ ++G+ + E+Q+VF+DTP Sbjct: 5 NYRSGFVAIVGRPNVGKSTFLNRVVAQKIAIMSDKAQTTRNKIQGVYTTDEAQVVFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLIL 135 GI ++ M+ + S +K D V +V++ I D LK++ K + L Sbjct: 65 GIHKPQNKLGDFMMDSALSALKEVDAVLFMVNATERRGAGDNFIIDRLKDVHK---PIYL 121 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID + P+ ++ E + ++ F +SA +G+ ++L L LP P Y Sbjct: 122 LINKIDEITPDDVMAIIEQYKNALSFKEVFPISALQGNNVPELLTSLIKELPNGPQYYPK 181 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ++D P +E+ REK+ +EIP+S+ V E +K+D + I+ I VER Q Sbjct: 182 DQVTDHPERFVISELIREKVLQMTRQEIPHSTAVYIESI-KKQDEVLHIQATIIVERDGQ 240 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+K+I ++ V+L L+VKV+ W Sbjct: 241 KGIVIGKGGSMLKKIGTLARKDIENMMGNKVYLELWVKVEAHW 283 >gi|86140695|ref|ZP_01059254.1| putative GTP-binding protein [Leeuwenhoekiella blandensis MED217] gi|85832637|gb|EAQ51086.1| putative GTP-binding protein [Leeuwenhoekiella blandensis MED217] Length = 309 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 105/285 (36%), Positives = 160/285 (56%), Gaps = 16/285 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N VG ++SI+T K QTTR + GIV+ + Q +F DTPGI Sbjct: 19 KAGFVNIIGNPNVGKSTLMNAIVGERLSIITSKAQTTRHRILGIVNGDDFQAIFSDTPGI 78 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ S + AD++ +V+ +ELK D +I ++L++NK Sbjct: 79 IKPAYELQASMMDFVKSAFEDADVLIYMVELGEKELKD--EDFFNKIRNTDIPVLLLINK 136 Query: 140 IDCVKPERLLE------QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ID E LLE Q ++ N + F +SA + G V + + LP++P Y Sbjct: 137 IDKGN-EELLEASRTHWQEKVPNAEI-----FAISALEDFGVSQVFDRILDALPVSPPFY 190 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D ++D P F EI REK+ +H KE+PYS + TE++ E+++ I +R +I VER Sbjct: 191 PKDALTDKPERFFVNEIIREKILMHYKKEVPYSVEIDTEEFVEEEN-IIRMRSIIMVERD 249 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++G G +K I +EA+K++ + VHL L+VKV KDW Sbjct: 250 SQKGIIIGHKGAALKRIGVEARKDLEIFFGKQVHLELYVKVNKDW 294 >gi|319935428|ref|ZP_08009865.1| GTP-binding protein [Coprobacillus sp. 29_1] gi|319809644|gb|EFW06057.1| GTP-binding protein [Coprobacillus sp. 29_1] Length = 297 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 161/287 (56%), Gaps = 1/287 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N + K++I + QTTR+ ++GI +++++QI+F+DTPGI Sbjct: 4 KSGFVSIVGRPNVGKSTLLNHILKTKLAITSSTAQTTRNTIQGIYTDEDAQIIFMDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D M + ++I D+V + + ++ +++ + + + LILNKI Sbjct: 64 HKPQDGLGSFMNTNALNSIYGVDLVLFLAPADEKIGKGDRFIVERLKEADGPVYLILNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E+L+E+ L ++ +SA G DD++N + + L Y D ++D Sbjct: 124 DLLSKEQLIEKLNEWKGLFDFKEIIPISALNGDNIDDLMNTIKNDLQEGVMYYPKDHLTD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE REK+ H+E+P+S +V E+ E + G + I I V+R SQK I++ Sbjct: 184 HPERFIMAEFIREKILYFTHEEVPHSVAIVIERMIEDEQG-VHIMAAIVVDRQSQKAIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 GK G IK + A+KE+ L+ PV L LFVKV+K+W + K + Sbjct: 243 GKQGSLIKKVRQNARKEMKRFLQVPVELELFVKVEKNWRNKQKYLKE 289 >gi|255019674|ref|ZP_05291753.1| GTP-binding protein Era [Acidithiobacillus caldus ATCC 51756] gi|254970897|gb|EET28380.1| GTP-binding protein Era [Acidithiobacillus caldus ATCC 51756] Length = 300 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 160/284 (56%), Gaps = 4/284 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VALVG N GKSTL+N +G K+SI + QTTR + G+ + ++QI+FLDTPG Sbjct: 8 ARCGAVALVGRPNVGKSTLLNHLIGQKISITAPRPQTTRDQILGVWTRGQAQILFLDTPG 67 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + ++ ++R + + + AD+ LVV++ + + L+ + +RS L+ ++NK Sbjct: 68 VHRGYRRLNRHLLRATRAALDGADLGILVVEALLWTAADA-EALRWLEQRSIPLLAVVNK 126 Query: 140 IDCVKPE-RLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D V+ + RLL AE+ + F+E +SA + + + + LP P ++AD Sbjct: 127 VDRVRGKARLLPYLAELGRRAPFLE-ILPLSARRAQDAERLAGRILPHLPPGPPRFAADT 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P+ AE RE++F L E+PY + V E++ +D I IY RP QK Sbjct: 186 LTDRPLRFLAAEFVREQIFRQLGAEVPYDTAVAIERYTVTEDDRHEIEATIYCRRPGQKA 245 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++G+ GQ +K I A++ I E+ V L L+VK ++DW D Sbjct: 246 ILVGEGGQRLKQIGSRARQAIEELTGSRVWLGLWVKEKEDWDDD 289 >gi|224542130|ref|ZP_03682669.1| hypothetical protein CATMIT_01305 [Catenibacterium mitsuokai DSM 15897] gi|224524967|gb|EEF94072.1| hypothetical protein CATMIT_01305 [Catenibacterium mitsuokai DSM 15897] Length = 298 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 156/278 (56%), Gaps = 1/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N + K+ I + QTTR+ V+G+ ++ E+QIVFLDTPGI Sbjct: 4 KSGFVSIVGRPNVGKSTLLNHILKTKLVITSPTAQTTRNTVQGVYTDDEAQIVFLDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D M + ++I D++ + ++ + +++ + K + L+LNK Sbjct: 64 HKPQDGLGSFMNTTALNSIVGTDVILFIEPANERIGKGDRFIVERLKKAECPVYLVLNKA 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + + L+++ N+++ ++ +SA G D+++ + LP P +Y D I+D Sbjct: 124 DLLSKDELMDKLIEWNQMMDFKEIIPISALNGDNVDELIKTVKQDLPEGPAIYPEDTITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE REK+ H EIP+ + E+W E ++G + I VI V R SQK I++ Sbjct: 184 HPEQFIMAEFIREKILYFTHDEIPHDVAIEIEQWIEDENG-LDIMAVIIVNRKSQKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G IK I +A++++ PV L LFV+V+KDW Sbjct: 243 GKQGTMIKKIKDQARRDMKRFAGVPVKLSLFVRVEKDW 280 >gi|297172549|gb|ADI23519.1| GTPase [uncultured Gemmatimonadales bacterium HF0770_41L09] Length = 317 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 106/284 (37%), Positives = 161/284 (56%), Gaps = 11/284 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G V LVG NAGKSTL+N+ VG +SIVT K QTT V GI+S QI+FLDTPG Sbjct: 17 ARTGYVTLVGRPNAGKSTLLNQLVGEHLSIVTPKAQTTWQRVTGILSVGTDQIIFLDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLI 134 + AKD + M+ + + ADI L++DS RE I L ++ S+ L Sbjct: 77 LLEAKDMLQRAMLGAALEALAEADITILLIDSTTKPNSRETASTIEAL----SETSAPLY 132 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 + LNK+D E + A++ + +S+ G G D +L L + LP+ P++Y Sbjct: 133 IALNKVDIADEEAIRAWEAWADR-ELSGSVYRLSSLTGEGADALLEGLRADLPVGPFLYP 191 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 + I+ P+ F AE+ RE +F H+EIPYS+ E++ E +D + ++ I+VER S Sbjct: 192 EEDIASDPVRFFVAELVRETIFELYHQEIPYSTFCHVEEFREDQD-PVYVQVQIFVERES 250 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G+ I+ + A+ +I ++ V+L L+VK K W Sbjct: 251 QKGILIGKKGRAIRELGEMARMKIEHFIDMRVYLDLWVKPLKAW 294 >gi|302841942|ref|XP_002952515.1| Era-like protein [Volvox carteri f. nagariensis] gi|300262154|gb|EFJ46362.1| Era-like protein [Volvox carteri f. nagariensis] Length = 453 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 4/293 (1%) Query: 13 KDFVQD--NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 +D QD RSG VA++G NAGKSTL+N VG K+SIVT+K QTTR + GI S+K Sbjct: 146 EDLEQDPPGHRSGYVAVIGKPNAGKSTLINALVGQKLSIVTYKPQTTRHRIMGIASDKHY 205 Query: 71 QIVFLDTPGIFNAKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 Q++ DTPG+ K + + M+ +IK ++ + VVDS + K + + Sbjct: 206 QMILFDTPGVIERKRTKLEERMMAAVVHSIKDSEAIVAVVDSADKPKEALAMFQPGESWN 265 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + ++LNK D + + + E + E+ F+ SA + G + + + S LP Sbjct: 266 GPPMAVLLNKADLLTEDEIQELKTWYTENCRAEQVFVGSAERRDGLEALREWAVSRLPEG 325 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG-SILIRQVI 248 P +YS +S+ P F AE RE++FLH +E+PY S V+ +++ E++ G I I Sbjct: 326 PTLYSKKIVSEQPERFFVAECIREQVFLHCQQEVPYCSQVLIKEFTERRGGLKDFISAEI 385 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VE+ SQK I++G G ++ I EA++EI LE+ V+L L V+V KDW D Sbjct: 386 VVEKESQKGILIGAGGAMLRRIGQEARREIETFLERGVYLELSVQVDKDWRDD 438 >gi|33861837|ref|NP_893398.1| GTP-binding protein Era [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640205|emb|CAE19740.1| GTP-binding protein ERA homolog [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 303 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 165/285 (57%), Gaps = 5/285 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG V L+G N GKSTL+N+ +G K++I + QTTR+ ++GI++ K QI+F+DTP Sbjct: 3 NYKSGFVTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTKFGQIIFVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ +++++ + S I D+V LV+DS E + + + I+ LN Sbjct: 63 GVHKPHHLLGEILVKNAKSAINGVDMVVLVLDSSVEPGRGDEYIKDFLVANKTEFIVALN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF-MVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V E + + K+ K F +VSA++G GC ++++ + + LP+ P +Y + Sbjct: 123 KWDLVNKEFKSLRLDQYRKVFGNSKNFQIVSASEGDGCSELIDIILNFLPIGPMLYEEET 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-KKDGS---ILIRQVIYVERP 253 I D P+ + A++ RE++ ++ +E+P+S V EK +E K+D I I VER Sbjct: 183 ICDQPLDNLLADLVREQVLINTREEVPHSVAVNIEKIKEIKRDKGKNFTAILATIIVERT 242 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GK G +KTI A+ + +++ PVHL LFVKV +W Sbjct: 243 SQKGILIGKKGSMLKTIGQSARSNMKKLINGPVHLELFVKVVPNW 287 >gi|239627753|ref|ZP_04670784.1| GTP-binding protein Era [Clostridiales bacterium 1_7_47_FAA] gi|239517899|gb|EEQ57765.1| GTP-binding protein Era [Clostridiales bacterium 1_7_47FAA] Length = 303 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 158/280 (56%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + ++ QI+FLDTPGI Sbjct: 8 KSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDDRGQIIFLDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ ++ T++ D++ +V+ + + +++ K + +IL++NKI Sbjct: 68 HKAKNKLGEYMVNVAEHTLRDVDVILWLVEPSTFIGAGERHIAEQLNKVKTPIILVINKI 127 Query: 141 DCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D VK E L A + F E +SA K D + + LP P Y D + Sbjct: 128 DTVKNQDEILTFMAAYKDICDFAE-IVPLSALKEKNTDLLTELIFKYLPYGPQFYDEDTV 186 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D PM AE+ REK L+ EIP+ V E+ +E+ DG + I I ER S K I Sbjct: 187 TDQPMRQIAAELIREKALRLLNDEIPHGIAVTIERMKERPDGIMDIDASIVCERDSHKGI 246 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I EA+K+I ++E V+L L+VKV+K+W Sbjct: 247 IIGKGGSMLKRIGTEARKDIERMMEIQVNLKLWVKVRKEW 286 >gi|22297600|ref|NP_680847.1| GTP-binding protein Era [Thermosynechococcus elongatus BP-1] gi|22293777|dbj|BAC07609.1| tlr0056 [Thermosynechococcus elongatus BP-1] Length = 307 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 157/281 (55%), Gaps = 2/281 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG N GKSTL N +G KV+I + QTTR+ +RGI++ +Q +F+DTPGI Sbjct: 15 RSGFVALVGRPNVGKSTLFNHLLGQKVAITSPVAQTTRNRLRGILTTATAQFIFVDTPGI 74 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++++ + +K D + VVD+ + + + +++ +NKI Sbjct: 75 HKPHHRLGEVLVHNAKGVLKRVDAIVFVVDAASPPGRGDRYVADLLTTTPAPVLMAINKI 134 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE EQ + + + + SA G G + + + + LPL P+ Y D ++D Sbjct: 135 DLLPPE-AREQRQQDYQTLGPWPAYPCSALTGEGVGLLQSAIAAQLPLGPYYYPPDMVTD 193 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ RE++ H +E+P+S V E+ +++++ + + VIYVERP+QK I++ Sbjct: 194 QPERFIMAELIREQILHHTREEVPHSVAVTIEQVQQERNLT-RVHAVIYVERPTQKAIII 252 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 G+ GQ +K I A++EI ++ ++L LFVKV+ W D Sbjct: 253 GQGGQLLKQIGTAARQEIETLIGGKIYLELFVKVRPRWRQD 293 >gi|83815627|ref|YP_446187.1| GTP-binding protein Era [Salinibacter ruber DSM 13855] gi|294508113|ref|YP_003572171.1| GTP-binding protein [Salinibacter ruber M8] gi|83757021|gb|ABC45134.1| GTP-binding protein Era [Salinibacter ruber DSM 13855] gi|294344441|emb|CBH25219.1| GTP-binding protein [Salinibacter ruber M8] Length = 304 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 162/299 (54%), Gaps = 10/299 (3%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 ME E F D + D+ SG VA+VG N GKSTL+N +G K+SIVT K QTTR Sbjct: 1 MEHSEPLF-----DDISDDHTSGYVAIVGKPNVGKSTLMNALLGEKLSIVTKKPQTTRHR 55 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 V GI S E Q +FLDTPGI + + H+ M+ I+ AD++ + ++ ++ Sbjct: 56 VLGIHSGPEHQAIFLDTPGIIEPRYALHETMMGQVQGAIRDADLLLFLHEATQDEPDT-- 113 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 LK+I + L+L K+D + E L E ++ SA +G +L+ Sbjct: 114 QSLKKIGDTPA--FLVLTKMDLIPKEETLPLVESYEDRRAFDEVVPTSAKEGFNLQTLLH 171 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 + TLP P Y D+IS+ P F AE+ REK++ H H+EIPYS V +EE+ +G Sbjct: 172 LVLDTLPEGPPFYPKDRISEHPERFFVAEMIREKVYKHYHQEIPYSVQVNVVAYEERPEG 231 Query: 241 S-ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + I I V S K I++G+ G+ +K + A+++I ++ PV+L L VKVQ++W Sbjct: 232 TKDYIDAEIVVMEESHKGILIGEGGKALKKVGTTAREDIEAFVQSPVYLNLHVKVQENW 290 >gi|169331621|ref|ZP_02860814.1| hypothetical protein ANASTE_00005 [Anaerofustis stercorihominis DSM 17244] gi|169259683|gb|EDS73649.1| hypothetical protein ANASTE_00005 [Anaerofustis stercorihominis DSM 17244] Length = 302 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 167/284 (58%), Gaps = 1/284 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + +N +SG +++VG TN GKSTL+N +G K+SIV+++ QTTR+ +R I + SQ+VF+ Sbjct: 1 MNNNFKSGFISIVGRTNVGKSTLLNLLLGQKISIVSNRPQTTRNNIRCIRTTGTSQMVFI 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPG K M+ ++ + K D++ +V+ + L++++ K + +IL Sbjct: 61 DTPGFHKPKSKLSDYMVEVAGESYKEVDVILFLVEEDTTIGKGDEFLIEKLKKEKTPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID + E +L + ++ K FI++ +SA KG ++++ + LP P + Sbjct: 121 VINKIDKITKEEILGKIKLYEKYDFIKEIVPISAMKGENINELVEVIEKYLPQGPMYFPE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 D ++D +E+ REK+ L +EIP+ + V +++ + + I IY ER + Sbjct: 181 DMVTDRSERFVISELIREKILRSLKEEIPHGTAVEVMLMKKRNNKDLYDIEANIYTEREN 240 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K+I++GKNG +K I ++++EI E+L V+L L+VKV+ +W Sbjct: 241 HKRIIIGKNGSMLKKIGSDSRREIEEMLGTKVNLKLWVKVKDEW 284 >gi|188585831|ref|YP_001917376.1| GTP-binding protein Era [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350518|gb|ACB84788.1| GTP-binding protein Era [Natranaerobius thermophilus JW/NM-WN-LF] Length = 297 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/278 (35%), Positives = 161/278 (57%), Gaps = 1/278 (0%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V+++G NAGKSTL+N +G KV I + K QTTR+ ++ + + + SQI+FLDTPG+ Sbjct: 8 SGFVSVIGRPNAGKSTLINYILGEKVVITSDKPQTTRNKIQCVYNGENSQIIFLDTPGMH 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + M++ ++ D + V+D L++ +A+ S+ +IL++NK+D Sbjct: 68 KPKHKLGEKMVKAVDESLNEMDAILFVIDVSVPFGKGETMLVERLARLSTPVILVMNKMD 127 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V + E+ E + + E +SA G+ D+L L + +P P Y DQ+ D Sbjct: 128 LVDEDLAREKTEKIKEKLSPESIHYISALYGNNLVDLLGELENLMPEGPKYYPEDQLIDQ 187 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIML 260 P +E+ REKL + +EIP+S V E ++D ++ I VIYVER SQKKI++ Sbjct: 188 PERFVVSELIREKLLNYTQEEIPHSVAVEIMLMENREDQDLIDIEAVIYVERESQKKIVI 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G+ G+ +K + EA+++I +L ++L L+VK QKDW Sbjct: 248 GRRGKLLKKVGQEARRDIENLLGSQIYLDLWVKNQKDW 285 >gi|332652574|ref|ZP_08418319.1| GTP-binding protein Era [Ruminococcaceae bacterium D16] gi|332517720|gb|EGJ47323.1| GTP-binding protein Era [Ruminococcaceae bacterium D16] Length = 298 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 154/279 (55%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + L G N GKSTL N VG KV+IVT+K QTTR+ + I++ ESQ VF+DTPG+ Sbjct: 5 KSGIITLCGRPNVGKSTLTNALVGEKVAIVTNKPQTTRNRITAILNRGESQFVFVDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A+ M+ + ++ D + L+V+ + L+ I +L++NK+ Sbjct: 65 HKARTRLGDYMVNVVKESVADVDGIMLLVEPIPNIGAPEQQLIDRIKTLGCPSVLVINKV 124 Query: 141 DCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + + E+LLE ++ + +SA G G D++LN L LP P ++ +S Sbjct: 125 DTLEQKEKLLEVIQVYTQAHDFTAVVPISAKTGEGVDELLNVLEGFLPNGPQLFPEGMVS 184 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P AEI REKL L L KEIP+ + V K+ E+ D I I IY E+ S K I+ Sbjct: 185 DQPERQMMAEILREKLLLCLDKEIPHGTAVEITKFSERDDEVIEIDATIYCEKNSHKGII 244 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K +S A++++ + V+L +VKV+++W Sbjct: 245 IGKGGSMLKKVSSLARQDMERFMGTKVYLQTWVKVKENW 283 >gi|206891076|ref|YP_002248190.1| GTP-binding protein Era [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743014|gb|ACI22071.1| GTP-binding protein Era [Thermodesulfovibrio yellowstonii DSM 11347] Length = 289 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G VAL+G N GKSTL+N +G KVSIVT K QTTR+ + GI + +QI+F+DTPGI Sbjct: 2 KCGYVALIGRPNVGKSTLINTVIGEKVSIVTEKPQTTRNRITGIKNLPNAQIIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M++ + + D++ +V+ + +++ + K + +IL +NKI Sbjct: 62 HKPRHKLGEFMVKEAQEAMDMVDLIVFMVEPEAPGNDEL-SIIERLKKLNKPVILAINKI 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V + LL E+ N L ++ +SA K G + ++ + LP +P +Y D ++D Sbjct: 121 DTVAKQNLLPLIELYNDLHPFQEIIPISALKKDGIERLVERIIFYLPDSPILYPEDMLTD 180 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AE REK+ + H EIPYS V E+WEE + I I IYVER QK I++ Sbjct: 181 QAERFMVAEFIREKIMKYTHDEIPYSVAVDIERWEE-TEKLISIGANIYVEREGQKIIII 239 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I+ EA+ +I + L + L ++VKV+K W Sbjct: 240 GKKGERLKKIATEARLDIEKFLGTKIFLEVWVKVRKKW 277 >gi|323490066|ref|ZP_08095287.1| GTP-binding protein Era-like protein (Bex protein) [Planococcus donghaensis MPA1U2] gi|323396362|gb|EGA89187.1| GTP-binding protein Era-like protein (Bex protein) [Planococcus donghaensis MPA1U2] Length = 305 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 102/281 (36%), Positives = 160/281 (56%), Gaps = 4/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKST +NR VG K++I++ K QTTR+ V+G+V+ +SQ++F+DTPGI Sbjct: 9 KSGFISIIGRPNVGKSTFLNRVVGQKIAIMSDKPQTTRNKVQGVVTTNDSQMIFIDTPGI 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++++ +T + D++ V + +L+ + + L++NKI Sbjct: 69 NEPRHKLGDFMLKVAKNTFREVDVLLFVASGVDRVGKEDRYVLEMLKGIDVPVFLVINKI 128 Query: 141 DCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V P+ L + E N+ F E +SA +G+ + +L + LP P Y ADQI+ Sbjct: 129 DQVHPDNLPKIIESYRNEFDFAE-AIPISALEGNNVETLLAKINERLPEGPQYYPADQIT 187 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR--QVIYVERPSQKK 257 D P +E+ REK +EIP+S VV EK + +IR I VER SQK Sbjct: 188 DHPERFIISELIREKALHLTREEIPHSIAVVIEKIAPDSENKDMIRVQATIMVERDSQKG 247 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+K+I +L V+L L+VKVQKDW Sbjct: 248 IVIGKKGVLLKQIGTRARKDIENLLGSKVYLELWVKVQKDW 288 >gi|312869116|ref|ZP_07729290.1| ribosome biogenesis GTPase Era [Lactobacillus oris PB013-T2-3] gi|311095362|gb|EFQ53632.1| ribosome biogenesis GTPase Era [Lactobacillus oris PB013-T2-3] Length = 301 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 155/280 (55%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VAL+G N GKSTL+N VG KV+I+++ QTTR+ ++GI + K++QI+F+DTP Sbjct: 5 NYKSGFVALIGRPNVGKSTLLNYIVGQKVAIMSNVAQTTRNKIQGIYTSKDAQIIFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ M R + S + D + VV + + + +++ + + + L++N Sbjct: 65 GVHKPATKLGDFMERSTLSALDEVDAIVYVVSATEKRGPGDNFIIERLKQVQQPIYLVVN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V P L + + + VSA +G+ ++++N L + LP P Y ADQI Sbjct: 125 KIDQVHPNDLPGIVDQYKGSLPFKGIIPVSALQGNNVNELINELVAGLPNGPQYYPADQI 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD P AE+ REK+F+ E+P+S V + + + I I VERP QK I Sbjct: 185 SDHPERFVIAEMIREKVFMLTRDEVPHSVAVDVTSIQREDAEHVHISANIVVERPGQKGI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK GQ +K I A+++I +L V L L+VKV W Sbjct: 245 IIGKKGQMLKKIGTLARQDIERLLGDRVFLQLWVKVVPKW 284 >gi|294791925|ref|ZP_06757073.1| GTP-binding protein Era [Veillonella sp. 6_1_27] gi|294457155|gb|EFG25517.1| GTP-binding protein Era [Veillonella sp. 6_1_27] Length = 307 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 156/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++IV+ K QTTR+ + + +++ QIVF+DTPG+ Sbjct: 16 KSGFVAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMDTPGV 75 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + ++K + V VV + + + +++++ + + L++NKI Sbjct: 76 HKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKI 135 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +K E LLE +SA ++L L +LP P + D I+D Sbjct: 136 DTLKKEELLEAIVSYQDAYPFAGVIPISAKDKENLSEILKVLEESLPEGPQYFPEDMITD 195 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P ++I REK+ L EIP++ V ++ + + DG+ IR IY ER SQK I++ Sbjct: 196 QPERLIISDIIREKILLATRDEIPHAIAVDVDEMKTRDDGTTYIRATIYCERDSQKGIII 255 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K + EA+ +I ++L V+L L+VKV+KDW Sbjct: 256 GKKGALLKQLGAEARADIQKLLATKVYLDLWVKVKKDW 293 >gi|154505900|ref|ZP_02042638.1| hypothetical protein RUMGNA_03442 [Ruminococcus gnavus ATCC 29149] gi|153793918|gb|EDN76338.1| hypothetical protein RUMGNA_03442 [Ruminococcus gnavus ATCC 29149] Length = 299 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 164/283 (57%), Gaps = 1/283 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++D+ +SG V L+G N GKSTL+N+ +G K++I ++K QTTR+ ++ +++ +E QIVF+ Sbjct: 1 MRDDFKSGFVTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M+ ++ T+ D+V +V+ + +++++ + + +IL Sbjct: 61 DTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIIEQLKRVKTPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID VK E +L + K + VSA G D+++N + LP P Y Sbjct: 121 VINKIDMVKREEVLLFIDAYRKEYDFAEIVPVSARNGDNTDELVNVILKYLPYGPQFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P AE+ REK L +EIP+ V ++ + ++ + I I ER S Sbjct: 181 DTVTDQPERQIVAELIREKALHCLQEEIPHGIAVAIDRM-KMQNKVMHIDATIICERDSH 239 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ EI +L+ V+L L+VKVQK+W Sbjct: 240 KGIIIGKQGSMLKKIGSTARYEIERMLDCKVNLKLWVKVQKNW 282 >gi|170077145|ref|YP_001733783.1| GTP-binding protein Era [Synechococcus sp. PCC 7002] gi|169884814|gb|ACA98527.1| GTP-binding protein Era [Synechococcus sp. PCC 7002] Length = 313 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 161/281 (57%), Gaps = 6/281 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VAL+G N GKSTL+N+ +G KV+I + QTTR+ +RGI+S ++QI+F+DTPGI Sbjct: 19 RSGFVALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRNRLRGILSTDQAQIIFVDTPGI 78 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K++++ + ST+ D+V +VD L + + K +++IL +NKI Sbjct: 79 HKPHHELGKILVKNARSTVGAVDLVVFIVDGAVPLGKGDQFIADFLVKTEAKVILGVNKI 138 Query: 141 DCV---KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D +PE L +A + + + F SA G ++ + L L P+ Y D Sbjct: 139 DQRPDKRPEILASYQALATQNHWQLQEF--SALAGDRLPELQDKLIQALDPGPYYYPPDL 196 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+D P AE+ RE++ LH +EIP+S + E+ E ++ + +R I VER SQK Sbjct: 197 ITDQPERFIMAELIREQILLHTRQEIPHSVAIAIEQVNEGEEIT-EVRAAINVERNSQKG 255 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +KTI A+++I +++ V+L LFVKVQ W Sbjct: 256 IIIGKKGAMLKTIGTAARQQIQKLIAGKVYLELFVKVQPKW 296 >gi|260892064|ref|YP_003238161.1| GTP-binding protein Era [Ammonifex degensii KC4] gi|260864205|gb|ACX51311.1| GTP-binding protein Era [Ammonifex degensii KC4] Length = 300 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 157/281 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V++VG N GKSTL+N VG KV+IV+ K QTTR + G+++ E+QIVF+DTPGI Sbjct: 7 RSGFVSVVGRPNVGKSTLINHLVGQKVAIVSDKPQTTRHRILGVLTLPEAQIVFVDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + ++ L+ +K D+V + ++ + +L+++ K +IL+LNKI Sbjct: 67 HKPRHRLGEYLVTLALGALKGVDLVLFLSEATSPPGAGDYFILEQLKKAEVPVILVLNKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + RLL ++ + VSA G + ++ + LP P + + + Sbjct: 127 DLISKPRLLPLIDLWRQEHDFAAIVPVSALTGENLERLVQEIVEHLPPGPQYFPPEVTTS 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ H+E+P+ VV E+ ++ + +R IYVER S KKI++ Sbjct: 187 QPPEFVVAELIREKVLHLTHEEVPHGVAVVVEEMASRRKDLVYLRATIYVERESHKKIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 G GQ ++ I +A++EI L + V+L L+VKV++ W D Sbjct: 247 GAGGQMLRQIGQKAREEIEAFLGKKVYLDLWVKVKEKWRRD 287 >gi|258544602|ref|ZP_05704836.1| GTP-binding protein Era [Cardiobacterium hominis ATCC 15826] gi|258520144|gb|EEV89003.1| GTP-binding protein Era [Cardiobacterium hominis ATCC 15826] Length = 300 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 167/284 (58%), Gaps = 8/284 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+R+G +A+VG N GKSTL+N +G K++I + K QTTR + GI + E+QI+F+DTP Sbjct: 2 NTRAGHIAVVGRPNVGKSTLINHLIGQKIAITSKKPQTTRHALLGIHTTGENQIIFVDTP 61 Query: 79 GIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLIL 135 GI +++ + ++ M R +W ++ + D++ V ++ R N D + K +A +I Sbjct: 62 GIHQSREKAINRHMNRTAWQSMDYVDLILQVSEAGR---WNDEDARIAKALAAGDKPVIQ 118 Query: 136 ILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 + NKID ++ + LL++ E L + VSA + D + L LP PW+Y Sbjct: 119 VPNKIDRLRDKTVLLKELEHIQSLGNWQAIIPVSAQQRQNLDTLERALIPFLPEQPWLYP 178 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+ M AEI REK+F +LH+EIPY+ V+ ++++E + + I I VER S Sbjct: 179 EDHITTAGMRFMAAEIIREKIFRYLHQEIPYALGVIIDQYQEDER-LVEIDATIMVERDS 237 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK GQ ++ I A++E+ +LE+ V L VK +++W Sbjct: 238 QKGIVIGKGGQTLRLIGQRAREELEGLLEKKVMLRNHVKTKENW 281 >gi|37523991|ref|NP_927368.1| GTP-binding protein Era [Gloeobacter violaceus PCC 7421] gi|35214997|dbj|BAC92363.1| glr4422 [Gloeobacter violaceus PCC 7421] Length = 304 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 105/285 (36%), Positives = 160/285 (56%), Gaps = 14/285 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTLVNR VG KV+IV+ QTTR+ +RGI++ +QI+ +DTPGI Sbjct: 11 RSGFVAIVGRPNVGKSTLVNRLVGEKVAIVSPTAQTTRNRLRGILTLPTAQIILVDTPGI 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + ++++ + S AD + LVVD E + + + + + +LNK+ Sbjct: 71 HKPQHRLGEVLVHNARSAAGSADGIVLVVDGSVEAGAGDRFIAESLKGSKAPVWPVLNKV 130 Query: 141 D-----CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D V+P R + +LVF E +SA KG G + ++ + S+LP P+ Y Sbjct: 131 DRRSRNQVEPIRESYRKLFDPELVFYE----ISALKGSGIEPLMESIISSLPEGPYYYPP 186 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR--QVIYVERP 253 D +D P E+ RE++ L +E+P+S VV +K EE G L R I VER Sbjct: 187 DLFTDQPERFIMGELVREQVLLATREEVPHSVAVVIDKVEE---GETLTRVLATIMVERD 243 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GK GQ +K I A+ ++ +++ ++L LFVKV++ W Sbjct: 244 SQKIILIGKGGQMLKAIGTGARHQMQKLVGHQIYLQLFVKVKERW 288 >gi|302528834|ref|ZP_07281176.1| GTP-binding protein Era [Streptomyces sp. AA4] gi|302437729|gb|EFL09545.1| GTP-binding protein Era [Streptomyces sp. AA4] Length = 299 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 104/288 (36%), Positives = 153/288 (53%), Gaps = 6/288 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG KV+I + K QTTR +RGIV ++Q+V +DTPG+ Sbjct: 6 RSGFACFVGRPNAGKSTLTNALVGTKVAITSSKPQTTRHAIRGIVHRDDAQLVIIDTPGL 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D+V V ++ ++ I LK+IA+R +I ++ Sbjct: 66 HRPRTLLGQRLNDVVHETWSEVDVVGFCVPANEKIGPGDRFIAAELKKIARRPP-VIGVV 124 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D VKPE++ EQ +++ VSA G V + L LP P +Y + Sbjct: 125 TKTDLVKPEQVAEQLVALQEVMEFADLVPVSAVDGFQVQTVADLLVQRLPEGPQLYPGGE 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQ 255 ++D P AE+ RE + E+P+S V E+ E +D I I ++YVERPSQ Sbjct: 185 LTDEPEQTLVAELIREAALEGVRDELPHSIAVTVEEMLPREDRDDLIDIHALLYVERPSQ 244 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I+LG G+ ++ + A+K I +L V+L L +KV KDW DPK Sbjct: 245 KGIILGHKGERLREVGATARKHIERLLGTKVYLDLHIKVAKDWQRDPK 292 >gi|167759231|ref|ZP_02431358.1| hypothetical protein CLOSCI_01578 [Clostridium scindens ATCC 35704] gi|167663105|gb|EDS07235.1| hypothetical protein CLOSCI_01578 [Clostridium scindens ATCC 35704] Length = 298 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 161/286 (56%), Gaps = 6/286 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 KDF +SG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ +E QI Sbjct: 3 KDF-----KSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQI 57 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 VF+DTPGI AK+ + M+ ++ T+ D+V +V+ + + +++ K S+ Sbjct: 58 VFVDTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPTTFIGAGEKHIAEQLKKVSTP 117 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +IL++NKID VK E +L + + VSA G+ +++L + LP P Sbjct: 118 VILVINKIDSVKKEEILPAIATYKDIYDFAEIVPVSARNGNNTEELLKAVMKYLPYGPQF 177 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D I+D P AE+ REK L +EIP+ V + + K+ + I I ER Sbjct: 178 YDEDTITDQPERQIVAELIREKALHSLQEEIPHGIAVAIDSM-KMKNKVMHIDATIICER 236 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GK G +K I A+ EI ++L+ V+L L+VKV+KDW Sbjct: 237 DSHKGIIIGKQGNMLKKIGSTARYEIEKMLDCQVNLKLWVKVKKDW 282 >gi|260061761|ref|YP_003194841.1| GTP-binding protein Era [Robiginitalea biformata HTCC2501] gi|88785893|gb|EAR17062.1| putative GTP-binding protein (cell growth-related) [Robiginitalea biformata HTCC2501] Length = 295 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N VG ++SI+T K QTTR + GIV+ + QIVF DTPGI Sbjct: 5 KAGFVNIIGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGIVNGDDFQIVFSDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ + AD++ +V+ E + ++I ++L++NKI Sbjct: 65 IKPAYGLQESMMDFVRLALVDADVLLYMVEVG-EKGLKDEAFAEKIRSSQIPVLLLINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +L EQ + + +SA + G +VL+ + + LP AP + DQ++D Sbjct: 124 DTSDQGQLEEQVAFWTEQFPNAEIIPISALERFGVPEVLDRILALLPEAPPYFPKDQLTD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ LH KEIPY+ + TE++EE D I I VI VER +QK I++ Sbjct: 184 RPERFFVNEIIREKILLHYKKEIPYAVEIETERFEE-TDEIIRIGAVIMVERATQKGILI 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G +K + EA+K++ ++ V L LFVKV K+W +D + Sbjct: 243 GHKGSALKRVGTEARKDLETFFDKKVFLELFVKVNKNWRNDAR 285 >gi|296140452|ref|YP_003647695.1| GTP-binding protein Era [Tsukamurella paurometabola DSM 20162] gi|296028586|gb|ADG79356.1| GTP-binding protein Era [Tsukamurella paurometabola DSM 20162] Length = 318 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 161/297 (54%), Gaps = 15/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG+KV+I + + QTTRS +RGIV+ Q+V +DTPG+ Sbjct: 16 RSGFVCFVGRPNTGKSTLTNALVGSKVAITSSRPQTTRSTIRGIVNRPNCQLVLVDTPGL 75 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L T DI+CL + + ++ I D ++ +A R+ L+ ++ Sbjct: 76 HRPRTLLGQRLNDLVRDTYSEVDIICLTIPADEKIGPGDKYILDQVRHMAPRTP-LLGVV 134 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V +++ EQ +K + + VSA G +D++ L S + P Y Sbjct: 135 TKIDKVGRDKVAEQLLAVSKFLGENSDVIPVSAASGEQVEDLVQLLASKMQPGPAFYPDG 194 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK----------KDGSILIRQ 246 +++D AE+ RE + E+P+S VV E+ E+ K G + + Sbjct: 195 EVTDTDDDTMMAELIREAALEGVRDELPHSLAVVIEEVIEREQTEAQVKADKPGMLDVHA 254 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ++YVERPSQK I++GK G +K++ EA+ EI ++L + V+L L VKV KDW DPK Sbjct: 255 LLYVERPSQKAIIIGKGGSRLKSVGTEARTEIEKLLGRKVYLSLHVKVAKDWQRDPK 311 >gi|283796159|ref|ZP_06345312.1| GTP-binding protein Era [Clostridium sp. M62/1] gi|291076378|gb|EFE13742.1| GTP-binding protein Era [Clostridium sp. M62/1] gi|295092205|emb|CBK78312.1| GTP-binding protein Era [Clostridium cf. saccharolyticum K10] Length = 301 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 159/294 (54%), Gaps = 11/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + +++ QI+FLDTPGI Sbjct: 6 KSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ ++ T+K D++ +V+ + + +++ K + +IL++NK Sbjct: 66 HKAKNKLGEYMVSVAEHTLKEVDVILWLVEPTTFIGAGERHIAEQLKKVKTPVILVINKT 125 Query: 141 DCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K E +L + + SA K D V + + LP P Y D ++ Sbjct: 126 DTIKNKEDILTFIAAYKDICEFAEIIPASALKEKNIDAVKDCIFKYLPEGPQFYDEDTVT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D PM AE+ REK L EIP+ V E+ E+K+G I I I ER S K I+ Sbjct: 186 DQPMRQIAAELIREKALRMLDDEIPHGIAVTIERMTERKNGMIDIEATIVCERDSHKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW----------GHDPK 303 +GK G +K I A+ EI +++ V+L L+VKV+K+W G++PK Sbjct: 246 IGKGGSMLKKIGTAARMEIGNLMDTQVNLKLWVKVRKEWRDSDLFMKNYGYNPK 299 >gi|307243689|ref|ZP_07525829.1| GTP-binding protein Era [Peptostreptococcus stomatis DSM 17678] gi|306492898|gb|EFM64911.1| GTP-binding protein Era [Peptostreptococcus stomatis DSM 17678] Length = 300 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 167/280 (59%), Gaps = 2/280 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N VG K++I++ K QTTR+ ++ + ++ ++QIVFLDTPGI Sbjct: 4 KSGFVSIVGRPNVGKSTLMNNMVGEKIAIMSDKPQTTRNTIQAVYTDDQAQIVFLDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ ++M++ + + K+ D + VVD ++ +++ + K + L++NK+ Sbjct: 64 HKPKNKLGQMMVKSAEESFKNVDCILFVVDDSDKIGKGDSMIIENLRKAKVPVFLVINKV 123 Query: 141 DCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + E + + ++ ++ ++ VSA KG D ++ + TL L P + ++ Sbjct: 124 DKIANKEEIFDLIKMYDQEGLFKEIIPVSALKGSNVDSLIKAIKQTLDLGPKYFPDYMVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D P AE+ REK+ + + E+P+ + EK + +KD I+ + VIY ER S K I Sbjct: 184 DQPERVLVAELIREKVLQYTNDEVPHGIAIEIEKMKARKDKDIVDVSAVIYCERNSHKGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GKNG+ +K I A++EI +L+ V+L L+VKV+++W Sbjct: 244 IIGKNGRKLKGIGKSAREEIEFLLDTRVNLQLWVKVKENW 283 >gi|228478255|ref|ZP_04062863.1| GTP-binding protein Era [Streptococcus salivarius SK126] gi|228249934|gb|EEK09204.1| GTP-binding protein Era [Streptococcus salivarius SK126] Length = 299 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAIIGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + + +++ + + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDNMIIERLKQAKVPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ E + ++ +SA +G+ +++ L L + ADQI+D Sbjct: 124 DKVHPDQLLEQIEDFRTQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPADQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKIM 259 P +E+ REK+ +EIP+S VV ++ + +D I IR I VER SQK I+ Sbjct: 184 HPERFLVSEMIREKVLQLTREEIPHSVAVVIDEMKRDEDTDKIHIRATIMVERDSQKGIV 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+K+I +L V L +VKV+K+W Sbjct: 244 IGKQGSMLKKIGTLARKDIEVMLGDKVFLETWVKVKKNW 282 >gi|262067524|ref|ZP_06027136.1| GTP-binding protein Era [Fusobacterium periodonticum ATCC 33693] gi|291378787|gb|EFE86305.1| GTP-binding protein Era [Fusobacterium periodonticum ATCC 33693] Length = 297 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 162/283 (57%), Gaps = 8/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAIVGRPNVGKSTLINKLVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + M ++ + +K DI+ +VD+ + + ++ I + S++ IL++NK Sbjct: 62 HKPQHLLGEYMTNIAVNILKDVDIILFLVDASKSIGTGDIFVMDRIKENSNKPRILLVNK 121 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D + E+ E+ EI KL +K SA G +L L L Y D Sbjct: 122 VDLISDEQKAEKLKEIEEKLGKFDKIIFASAMYSFGIAQLLEALDPYLEEGVKYYPDDMY 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVV---TEKWEEKKDGSILIRQVIYVERPSQ 255 +D+ + EI REK+ L EIP+S V E+ E KKD IYVER SQ Sbjct: 182 TDMSTYRIITEIVREKILLKTRDEIPHSVAVEIIDVERNEGKKDK---FNINIYVERDSQ 238 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GKNG+ +K I +EA+KEI +L++ ++L L+VKV+ DW Sbjct: 239 KGIIIGKNGKMLKDIGMEARKEIENLLDEKIYLGLWVKVKDDW 281 >gi|325662229|ref|ZP_08150844.1| GTP-binding protein Era [Lachnospiraceae bacterium 4_1_37FAA] gi|331086022|ref|ZP_08335105.1| GTP-binding protein Era [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471481|gb|EGC74702.1| GTP-binding protein Era [Lachnospiraceae bacterium 4_1_37FAA] gi|330406945|gb|EGG86450.1| GTP-binding protein Era [Lachnospiraceae bacterium 9_1_43BFAA] Length = 298 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 157/280 (56%), Gaps = 1/280 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + RSG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ +E QIVF+DTP Sbjct: 4 DYRSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTP 63 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI AK+ + M+ ++ T+ D+V +V+ + + +++ K + +IL++N Sbjct: 64 GIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGERHIAEQLKKVKTPVILVIN 123 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K D VK E + + + VSA G D+++ + LP P Y D I Sbjct: 124 KTDKVKKEEVFTFIDAYKNIYDFAAIVPVSARSGENTDELIRVIMQHLPYGPQFYDEDTI 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P AEI REK L++EIP+ V ++ + +K + I I ER S K I Sbjct: 184 TDQPQRQIVAEIIREKALHSLNEEIPHGIAVAIDRMKMRKK-IVDIDATIICERDSHKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+ EI ++LE V+L L+VKV+KDW Sbjct: 243 IIGKQGAMLKKIGSTARYEIEQMLECKVNLQLWVKVKKDW 282 >gi|317495247|ref|ZP_07953617.1| GTP-binding protein Era [Gemella moribillum M424] gi|316914669|gb|EFV36145.1| GTP-binding protein Era [Gemella moribillum M424] Length = 302 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 163/282 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G NAGKSTL+N + K++I++ K QTTR+I+ G+ ++++SQIVF+DTPGI Sbjct: 7 KTGFVTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDQDSQIVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++L+ S I+ ++IV L++++ + L+ + + + L++NKI Sbjct: 67 HKPKHRLGDYMMKLASSAIQESEIVYLIINAGEKFGPGDQHLINIVKELNVPTFLLINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE+L+E L + +SA K D++LN L L+ +Y D I+D Sbjct: 127 DLISPEKLIEIISFYKDLYDFVEIVPISALKSINVDNLLNVTKKYLQLSYKMYPDDVITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E REK+ +EIP+S V+ +K E++ I I VER SQK +++ Sbjct: 187 SPEYFVISEFIREKVLQLTSQEIPHSIAVIIDKIEKQDGKKKNIIATIVVERKSQKGMII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 GK G+ I+ I A+K+I +L + V L L+VKV +W P Sbjct: 247 GKQGKMIREIGTRARKDIEVLLGEKVFLELWVKVIDNWRSKP 288 >gi|303228934|ref|ZP_07315744.1| GTP-binding protein Era [Veillonella atypica ACS-134-V-Col7a] gi|302516348|gb|EFL58280.1| GTP-binding protein Era [Veillonella atypica ACS-134-V-Col7a] Length = 299 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 157/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKST++N +G K++IV+ K QTTR+ + + +++E QIVF+DTPG+ Sbjct: 8 KSGFVAVVGRPNVGKSTMINALIGDKIAIVSDKAQTTRNRIICVYTDEEKQIVFMDTPGV 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + ++K + V VV + + + +++++ + + L++NKI Sbjct: 68 HKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++ E++LE +SA ++LN L LP P + D I+D Sbjct: 128 DTLQKEQVLEAIVSYQDAYPFAGVIPISAKNKENLSELLNVLGEHLPEGPQYFPEDMITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P ++I REK+ L EIP++ V ++ + + DG+ IR IY ER SQK I++ Sbjct: 188 QPERLIISDIVREKILLSTRDEIPHAIAVDVDEMKTRDDGTTYIRATIYCERDSQKGIII 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G ++ I EA+ +I ++L V+L L+VKV+KDW Sbjct: 248 GNKGALLRKIGAEARMDIQKLLATKVYLDLWVKVKKDW 285 >gi|117924216|ref|YP_864833.1| GTP-binding protein Era [Magnetococcus sp. MC-1] gi|117607972|gb|ABK43427.1| GTP-binding protein Era [Magnetococcus sp. MC-1] Length = 303 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 161/283 (56%), Gaps = 2/283 (0%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG VA+VG N GKST +NR +G K++IV+ K QTTR+ V G ++ QIVFLDT Sbjct: 3 DTFRSGFVAIVGRPNMGKSTFLNRVMGQKLAIVSPKPQTTRTRVLGALNRDNCQIVFLDT 62 Query: 78 PGIFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PGI A K+ ++ M++ + + + D V VD+ R + ++++ + + + + LI Sbjct: 63 PGIHKAGKNLLNRAMVQTAMQSCQEVDAVLYFVDAQRGVTEGDLEIVQRLPRGEAPIYLI 122 Query: 137 LNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D + E LL A+ + ++ +SA +G D ++ L + + P + Sbjct: 123 INKVDQIPQESLLPLLAKAGESGLPFDEVIPISALEGSNVDYLVGLLDAKMVEGPRYFPE 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 ++D P EI REKLFL+L +E+PY+ V E +EE++ G++ +I V R S Sbjct: 183 GMVTDQPERFIAGEIVREKLFLNLQQELPYALAVQVEHYEERESGALEFHALIIVHRDSH 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K +++GK G +K I A+ E+ +L V L +VKV+KDW Sbjct: 243 KAMVIGKQGAMLKKIGSAARYELERLLGCKVILKCWVKVKKDW 285 >gi|313903264|ref|ZP_07836656.1| GTP-binding protein Era [Thermaerobacter subterraneus DSM 13965] gi|313466352|gb|EFR61874.1| GTP-binding protein Era [Thermaerobacter subterraneus DSM 13965] Length = 345 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 94/279 (33%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VAL+G N GKSTL+N+ +G K++I++ K QTTR+ + G+++ +Q+VF+DTPGI Sbjct: 53 RSGFVALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTTRTRILGVLNRPGAQLVFVDTPGI 112 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNK 139 + + M++++ T++ + VC +V++ RE + +++A + +L++NK Sbjct: 113 HKPQHLLGEHMVQIARRTLQEVEAVCWLVEAPDREPGPGDRFIAEQLAGLKTPRVLVVNK 172 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P + A +L VSA G G +++ L LP P + D ++ Sbjct: 173 IDQVAPGEVPAIAARFAELGTFAAVHPVSALHGVGVAELVGTLEGLLPEGPRFFPEDMVT 232 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P AE+ RE++ +E+P++ V EK E + +G + + IYVER QK+I+ Sbjct: 233 DQPEAQIMAELIREQILHLTREEVPHAVAVQIEKVERRPNGVVYVPATIYVEREGQKRIL 292 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G+ G+ +K I A+ EI +L ++L L+VKV+ DW Sbjct: 293 IGEQGRMLKEIGRLARLEIEALLGSRIYLDLWVKVKPDW 331 >gi|225377164|ref|ZP_03754385.1| hypothetical protein ROSEINA2194_02810 [Roseburia inulinivorans DSM 16841] gi|225211069|gb|EEG93423.1| hypothetical protein ROSEINA2194_02810 [Roseburia inulinivorans DSM 16841] Length = 302 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 159/280 (56%), Gaps = 2/280 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPG 79 +SG V ++G N GKSTL+N +G K++I ++K QTTR+ ++ + ++ E QIVFLDTPG Sbjct: 6 KSGFVTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERGQIVFLDTPG 65 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I AK+ + M+ ++ T+ D++ +V+ + +++++ K + +ILI+NK Sbjct: 66 IHRAKNKLGEYMVNVAEHTLNEVDVILWLVEPSNFIGAGEQHIIEQLKKVKTPVILIINK 125 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D V E+++E + K+ + SA + D V++ + LP P Y D ++ Sbjct: 126 VDTVDREKIVEYIDTYRKVYDFAEIIPASALRAKNLDTVIDMIFKYLPYGPQFYDEDTVT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D P AEI REK L EIP+ V ++ + +K +I+ I I ER S K I Sbjct: 186 DQPERAIVAEIIREKALHALDDEIPHGIAVYIDRMKGRKGQNIIDIDATIVCERDSHKGI 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+ EI +L+ V+L L+VKV+KDW Sbjct: 246 IIGKGGAMLKKIGSNARYEIERLLDTKVNLKLWVKVKKDW 285 >gi|218961441|ref|YP_001741216.1| GTP-binding protein Era [Candidatus Cloacamonas acidaminovorans] gi|167730098|emb|CAO81010.1| GTP-binding protein Era [Candidatus Cloacamonas acidaminovorans] Length = 299 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 160/281 (56%), Gaps = 5/281 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG V ++G N GKSTL+N +G K+SI + K QTTR ++GI + E QI+F+DTP Sbjct: 11 NFKSGFVTIIGKPNTGKSTLMNLILGEKISITSPKPQTTRYAIKGIWNTSEHQIIFVDTP 70 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G + + M+++ + +K D++ + ++L ++ + + + N Sbjct: 71 GYLKPRYELQEKMLKIWHNALKDVDLIIFLTQIDGFPTEYDKEVLNQLKTLKNPQLAVFN 130 Query: 139 KIDCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D + PE +++ E+ L I + F VSA G +++ + +P Y D Sbjct: 131 KLD-LNPE--VDRNELVKYLPESINEVFFVSAKTGENIPELMEAIKYYIPFHEPYYDNDM 187 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +SDLPM F EI RE +F +EIPYSS V+ E+++E D ++I VI++ER SQK Sbjct: 188 LSDLPMRFFAQEIIREAIFHFFEEEIPYSSAVLIERFKEFPD-KVIIDAVIWLERESQKP 246 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GKNG +IK + A++E+ ++ PV + LFVK++ W Sbjct: 247 ILIGKNGSSIKKVREYAERELTRFMQMPVQVHLFVKIKHKW 287 >gi|297851576|ref|XP_002893669.1| GTP-binding protein [Arabidopsis lyrata subsp. lyrata] gi|297339511|gb|EFH69928.1| GTP-binding protein [Arabidopsis lyrata subsp. lyrata] Length = 435 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 100/290 (34%), Positives = 161/290 (55%), Gaps = 11/290 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ +S V ++G NAGKS+L N VG KV+ + K TT V G++++ ++Q+ F D Sbjct: 146 EEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVAAASRKTNTTTHEVLGVLTKGDTQVCFFD 205 Query: 77 TPGIFNAKDSYH----KLMIRLSWSTIKHADIVCLVVDSHRELK------VNIHDLLKEI 126 TPG+ K Y K ++ +W+++ D++ ++ D HR L V + + E Sbjct: 206 TPGLMLKKSGYGYKDIKSRVQNAWTSVDLFDVLIVMFDVHRHLMSPDSRVVRLIKYMGEE 265 Query: 127 AKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + IL +NK+D V K + LL+ AE L E+ FM+S KG G D+ YL Sbjct: 266 ENPKQKRILCMNKVDLVEKKKDLLKVAEEFQDLPAYERYFMISGLKGSGVKDLSQYLMDQ 325 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW A +S+ + + + E+ RE+L H+H+EIPY W+E +DGS+ I Sbjct: 326 AVKKPWEEDAFTMSEEVLKNISLEVVRERLLDHVHQEIPYGVEHRLVDWKELRDGSLRIE 385 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 Q + +PSQ+KI++GK G I I +EA +E+ I+ + VHLIL VK++ Sbjct: 386 QHLITPKPSQRKILVGKGGSKIGRIGIEANEELRRIMNRKVHLILQVKLK 435 >gi|303231481|ref|ZP_07318211.1| GTP-binding protein Era [Veillonella atypica ACS-049-V-Sch6] gi|302513824|gb|EFL55836.1| GTP-binding protein Era [Veillonella atypica ACS-049-V-Sch6] Length = 299 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 157/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKST++N +G K++IV+ K QTTR+ + + +++E QIVF+DTPG+ Sbjct: 8 KSGFVAVVGRPNVGKSTMINALIGDKIAIVSDKAQTTRNRIICVYTDEEKQIVFMDTPGV 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + ++K + V VV + + + +++++ + + L++NKI Sbjct: 68 HKPKHKLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++ E++LE +SA ++LN L LP P + D I+D Sbjct: 128 DTLQKEQVLEAIVSYQDAYPFAGVIPISAKNKENLSELLNVLGEHLPEGPQYFPEDMITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P ++I REK+ L EIP++ V ++ + + DG+ IR IY ER SQK I++ Sbjct: 188 QPERLIISDIIREKILLSTRDEIPHAIAVDVDEMKTRDDGTTYIRATIYCERDSQKGIII 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G ++ I EA+ +I ++L V+L L+VKV+KDW Sbjct: 248 GNKGALLRKIGAEARMDIQKLLATKVYLDLWVKVKKDW 285 >gi|150020700|ref|YP_001306054.1| GTP-binding protein Era [Thermosipho melanesiensis BI429] gi|189037682|sp|A6LL68|ERA_THEM4 RecName: Full=GTPase Era gi|149793221|gb|ABR30669.1| GTP-binding protein Era [Thermosipho melanesiensis BI429] Length = 299 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 159/279 (56%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G VAL G N GKS+LVN VG KV IV+ K QTTR+ + I + + Q++F+DTPGI Sbjct: 2 KTGFVALAGKPNVGKSSLVNAIVGRKVLIVSDKPQTTRNRINVIHTTNDFQVIFVDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ + S +K D++ V+D+ + + + + +++ I ++NKI Sbjct: 62 HKPLYRLGEYMVKAAVSALKGVDLILTVIDAKEGIGKPEAFVFDYVNQSNTKTIGVINKI 121 Query: 141 DCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V E++ Q + KL SAT+ G ++L+ + LP P Y D ++ Sbjct: 122 DLVGTEKVETLQKIMEEKLTNCISIVKTSATRNEGTKELLDLIIENLPEGPQYYPEDMVT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P+ +EI REK+F ++EIP+S V+ E+ +E+ +G + IR IYV+R SQK I+ Sbjct: 182 DRPLSFMVSEIVREKIFHFTYEEIPHSVAVIVEEIKERDNGILYIRANIYVDRNSQKGII 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G IK I A++EI ++ V L L VKV+++W Sbjct: 242 IGNKGTMIKKIGQNARQEIEYLVGGKVFLDLHVKVKRNW 280 >gi|157364142|ref|YP_001470909.1| GTP-binding protein Era [Thermotoga lettingae TMO] gi|189037681|sp|A8F6R1|ERA_THELT RecName: Full=GTPase Era gi|157314746|gb|ABV33845.1| GTP-binding protein Era [Thermotoga lettingae TMO] Length = 296 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 103/280 (36%), Positives = 161/280 (57%), Gaps = 7/280 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V LVG NAGKS+L+N F+G KV IV+ K QTTR+ +R I ++ QI+F DTPGI Sbjct: 3 SGFVTLVGRPNAGKSSLINSFIGRKVLIVSEKPQTTRNKIRCIYTDSYHQIIFTDTPGIH 62 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 + M++++ +K D+V VVD+ + E + I DL+K ++K + L++N Sbjct: 63 KPVHRLGEFMVKVAIQAMKGVDLVLFVVDATKGFGEPEKRICDLVK-LSKTET--FLVIN 119 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID K L + ++ F K F S K G +++L + + +P P + + + Sbjct: 120 KIDLAKNYEFLAKTIVSECDCF-SKVFFTSVVKNEGIEELLQAIKNCMPEGPMYFPENML 178 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 D P+ AEI REK+ L +EIP+ V+ + E++++ + + IYVER SQK I Sbjct: 179 IDRPISFQIAEIIREKVLLFTREEIPHCVAVIVDTMEKRQNNLLYVAATIYVERNSQKGI 238 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GKNG +K I ++ EI I+ V+L L VKV+K+W Sbjct: 239 IIGKNGNMLKQIGTLSRIEIESIVGSKVYLDLHVKVKKNW 278 >gi|154498351|ref|ZP_02036729.1| hypothetical protein BACCAP_02340 [Bacteroides capillosus ATCC 29799] gi|150272662|gb|EDM99840.1| hypothetical protein BACCAP_02340 [Bacteroides capillosus ATCC 29799] Length = 297 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 154/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +A+VG N GKSTL N VG K++IVT+K QTTR+ + +++ E Q VF+DTPG+ Sbjct: 5 KSGMIAIVGRPNVGKSTLTNALVGEKIAIVTNKPQTTRNRICAVLNRGECQFVFMDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A+ M+++ ++ D V L+V+ + +L++ I +L++NKI Sbjct: 65 HRARTRLGDYMVKVVRDSVADVDAVMLLVEPIPHVGGPEEELIERIKALGVPSVLVINKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D VK + LL + + + +SA G +D+L L LP P ++ D ++D Sbjct: 125 DTVKKDELLAVMQAYGEKHSFDAILPISAKNSEGLEDLLKVLGEFLPEGPQLFPEDMVTD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AEI REKL L L KEIP+ + V ++ E+ D I + IY E+ S K I++ Sbjct: 185 QPERQVCAEIVREKLLLCLDKEIPHGTAVEVTRFIERDDEVIEMDATIYCEKDSHKGIII 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K IS A+++I + V L +VKV+++W Sbjct: 245 GKGGAMLKKISTLARQDIERFMGTKVFLQTWVKVKENW 282 >gi|284040066|ref|YP_003389996.1| GTP-binding protein Era [Spirosoma linguale DSM 74] gi|283819359|gb|ADB41197.1| GTP-binding protein Era [Spirosoma linguale DSM 74] Length = 306 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 163/290 (56%), Gaps = 19/290 (6%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK----ESQIVF 74 + ++G V++VG N GKSTL+N+ VG ++SI+T K QTTR + GI++ E Q+V+ Sbjct: 12 DHKAGFVSIVGKPNVGKSTLMNQLVGERLSIITAKAQTTRHRIMGILNGTHDGTEFQLVY 71 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPGI H+ M+ +I+ AD+V V D + N D+++ + K ++ Sbjct: 72 SDTPGIIKPLYKLHESMMSFVRGSIEDADVVLFVTDIFEQHDEN--DVIERLQKSEVPVL 129 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM------VSATKGHGCDDVLNYLCSTLPL 188 L++NK+D Q ++ K+ + E+ F +SA D V + S LP Sbjct: 130 LLINKVDQAT------QDQVVEKIAYWEERFKATEIIPISALNDFNVDRVFEGIISRLPQ 183 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P + D+++D P F +EI REK+FL+ KE+PYSS VV ++EK D I+I+ I Sbjct: 184 HPPYFPKDELTDKPERFFASEIIREKIFLNYKKEVPYSSEVVVTGFKEKDD-IIVIQAEI 242 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VER +Q+ I+LG+ G+ IK + A++E+ + V L FVKV+ DW Sbjct: 243 LVERATQRAILLGEGGKMIKKTGIMAREELERFFGKKVFLEQFVKVEPDW 292 >gi|289209107|ref|YP_003461173.1| GTP-binding protein Era [Thioalkalivibrio sp. K90mix] gi|288944738|gb|ADC72437.1| GTP-binding protein Era [Thioalkalivibrio sp. K90mix] Length = 303 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 168/297 (56%), Gaps = 18/297 (6%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 + +R G VALVG N GK+TL+NR VG K++ T + TTR+ + GIV+E + QIV +D Sbjct: 6 ESGTRCGLVALVGRPNVGKTTLMNRLVGEKLAATTRRPHTTRNRILGIVTEGDDQIVLMD 65 Query: 77 TPGIFNAKDSY-HKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRL 133 TPGI + ++++ R + + AD+VC +V++ R E I L+++ + + Sbjct: 66 TPGIDTERTRLVNRVLNRTASQALADADLVCFLVEAGRFGEGDERIEQLIRQSERPA--- 122 Query: 134 ILILNKIDCVKPERLLEQAE----IANKLVFIEKTFMV--SATKGHGCDDVLNYLCSTLP 187 +L++NK+D R E+ E IA ++ + +V SA G +++ + + LP Sbjct: 123 LLVINKVD-----RAREKEELLPFIAGRMEAMPYAGVVPLSAKTGSNVAGLIDEIRAHLP 177 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 P++Y +Q+SD P E+ RE L L +E+PYS V E+W ++ + I V Sbjct: 178 AGPFLYDPEQLSDRPERFRAEEMIRESLLESLGQEVPYSVAVRVEQWADEPR-TTHIDAV 236 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I VER SQK I++GK GQ +K I A+ ++ E+L + V L L V+V+ DW +P+ Sbjct: 237 IMVERDSQKGIVIGKGGQRLKRIGQAARLQLEELLGRKVMLRLTVRVEADWTRNPRA 293 >gi|238917282|ref|YP_002930799.1| GTP-binding protein Era [Eubacterium eligens ATCC 27750] gi|238872642|gb|ACR72352.1| GTP-binding protein Era [Eubacterium eligens ATCC 27750] Length = 322 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 163/282 (57%), Gaps = 3/282 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++G V +G N GKSTL+N+ +G K++I ++K QTTR+ ++ + +++ QIVF+DTPG Sbjct: 23 TKTGFVTFIGRPNVGKSTLMNQIIGQKIAITSNKPQTTRNRIQTVYTDERGQIVFVDTPG 82 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I AK+ + M+ + TI D++C +V+ L +++++ + + ++L++NK Sbjct: 83 IHKAKNKLGEYMVGAAEKTISEVDLICWLVEPTTHLGAAEEHIVEKLKECKTPIVLVINK 142 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K E +L + K + V A G+ DD+L+ + L P Y D ++ Sbjct: 143 TDTIKKEEILPVIDCYRKELDFVDIVPVCARNGNNVDDLLDVIFLHLDYGPMYYDEDTVT 202 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--GSIL-IRQVIYVERPSQK 256 D PM AE+ REK L+ EIP+ VV + ++E+++ G I I I ER S K Sbjct: 203 DQPMKQIVAELIREKALHALNDEIPHGIAVVIDSFKERRNARGPITDIDATIICERDSHK 262 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K I A+ EI + L+ V+L L+VKV+K+W Sbjct: 263 GIIIGKGGEMLKKIGTNARYEIEKQLDMKVNLKLWVKVKKEW 304 >gi|50085654|ref|YP_047164.1| GTP-binding protein Era [Acinetobacter sp. ADP1] gi|49531630|emb|CAG69342.1| GTP-binding protein,16S rRNA-binding, ribosome-associated GTPase [Acinetobacter sp. ADP1] Length = 345 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 106/311 (34%), Positives = 172/311 (55%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + RSG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 28 FFSAAGTEIPSDFRSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSR 87 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++SQ V++DTPG+ + + +K+M R + S ++ ++V VVD H+ + N +L+++ Sbjct: 88 EKSQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVVDIHKWTQ-NDDLVLEKL 146 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK+D ++ ++ LL + KL+ + VSA +G D + + + Sbjct: 147 KNAEMPVILVINKVDTLEDKKSLLPLIQERTKLMNFAEIIPVSALRGANLDQLRDTVEKY 206 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +EI REK+ L +E+PY V V+EK Sbjct: 207 LPFQPPLYSLDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEPTVSEKT 266 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+VER QK I++G+ G +K I +EA+ ++ ++ EQ + L L+VKV Sbjct: 267 GRLKPACTYIDATIFVERAGQKAIVIGEKGAKLKRIGMEARTDMEKMFEQKIMLTLWVKV 326 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 327 KGGWSDDERAL 337 >gi|257865833|ref|ZP_05645486.1| GTP-binding protein Era [Enterococcus casseliflavus EC30] gi|257872168|ref|ZP_05651821.1| GTP-binding protein Era [Enterococcus casseliflavus EC10] gi|257875461|ref|ZP_05655114.1| GTP-binding protein Era [Enterococcus casseliflavus EC20] gi|325569848|ref|ZP_08145842.1| GTP-binding protein Era [Enterococcus casseliflavus ATCC 12755] gi|257799767|gb|EEV28819.1| GTP-binding protein Era [Enterococcus casseliflavus EC30] gi|257806332|gb|EEV35154.1| GTP-binding protein Era [Enterococcus casseliflavus EC10] gi|257809627|gb|EEV38447.1| GTP-binding protein Era [Enterococcus casseliflavus EC20] gi|325156971|gb|EGC69139.1| GTP-binding protein Era [Enterococcus casseliflavus ATCC 12755] Length = 299 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 165/278 (59%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++G+ + ++Q++F+DTPGI Sbjct: 5 KSGFVAIVGRPNVGKSTLLNRVVGQKIAIMSDKAQTTRNKIQGVYTTDDAQLIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ ++S ++ D+ ++ + ++ +++ + + + + L++NKI Sbjct: 65 HKPKHRLGDFMVETAYSALREVDVTLFMISADQKRGKGDDFIIERLRQSQTPVFLVINKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL E + + + +SAT+G+ + ++ L +P P + DQI+D Sbjct: 125 DKVHPDALLAIIEDYSSQMDFAEIVPISATEGNNFETLMKLLIDEMPEGPQYFPEDQITD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E+ REK+ L E+P+S VV + + + + I+ I VER SQK I++ Sbjct: 185 HPEYFIVSELVREKVLLLTRDEVPHSVAVVVDSMKRDHNDKVHIQATIIVERDSQKGIII 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I +A+ +I +L+ V L L+VKVQKDW Sbjct: 245 GKGGKMLKQIGTKARLDIEHLLDDKVFLELWVKVQKDW 282 >gi|227537544|ref|ZP_03967593.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33300] gi|227242596|gb|EEI92611.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33300] Length = 292 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 163/278 (58%), Gaps = 3/278 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V+++G NAGKSTL+N VG K+SI+T K QTTR + GIV+++ QIVF DTPG+ Sbjct: 4 KAGFVSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRIIGIVNDENHQIVFSDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 S + M+ ++ ADI+ V D + K + +D+++++ K SS + +++NKI Sbjct: 64 IKPNYSLQESMMNFVQGSLIDADIILFVTDINE--KYDENDVIEKLRKTSSPVAVLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E + + E + + + F +SA H ++ Y+ LP Y D+++D Sbjct: 122 DKSTEEDVKAKIEFWKEKLNPDTIFAISALLQHNVVAIMEYIKEKLPEHAPYYEKDELTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 M F +E+ REK+F KEIPYS+ V+ ++E+ + + ++I VER SQK I++ Sbjct: 182 KSMRFFVSEMIREKVFKLYDKEIPYSTEVIITSYKEEPKITRIAAEII-VERDSQKNILI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ IK + A+++I E + V L +FVKV DW Sbjct: 241 GKAGEMIKKVGTYARQDIEEFIGGKVFLEIFVKVIPDW 278 >gi|33240804|ref|NP_875746.1| GTP-binding protein Era [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238333|gb|AAQ00399.1| GTPase, Era homolog [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 314 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 14/294 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VAL+G N GKSTL+N+FVG KV+I + QTTR+ +R I++ ++Q+VF+DTPGI Sbjct: 12 RSGFVALIGRPNVGKSTLINQFVGEKVAITSPVAQTTRNRLRAILTINKAQLVFVDTPGI 71 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + ++ S I D + L+ D + ++K + ++ + ++LNK Sbjct: 72 HKPHHLLGERLVNTSKKVIGEVDSILLIFDGNEPPGSGDSYIVKLLKGQNIPVTIVLNKW 131 Query: 141 DCVKPERLLEQAEIANKLVFIEKT----FMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D V + ++ I + F T F SA G GCD ++ + STLP+ P +Y + Sbjct: 132 DLVTENQRTDR--IKEYISFFNNTGWNFFCCSAINGKGCDGLIQKISSTLPVGPLLYPSG 189 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE----KKDG----SILIRQVI 248 SD P E+ RE++ L+ +EIP+S V ++ EE KK G I I + Sbjct: 190 VTSDQPEEILMRELIREQVLLNTREEIPHSVAVSIDRIEEMTASKKKGVSKKRIAILATV 249 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 VER SQK I++GK G +K I A+ +I ++L PV+L LFVKV DW P Sbjct: 250 LVERKSQKGILIGKGGSMLKKIGKGARMQIQKLLNGPVYLELFVKVVPDWRSKP 303 >gi|167037775|ref|YP_001665353.1| GTP-binding protein Era [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039985|ref|YP_001662970.1| GTP-binding protein Era [Thermoanaerobacter sp. X514] gi|256751969|ref|ZP_05492839.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus CCSD1] gi|300914075|ref|ZP_07131391.1| GTP-binding protein Era [Thermoanaerobacter sp. X561] gi|307724692|ref|YP_003904443.1| GTP-binding protein Era [Thermoanaerobacter sp. X513] gi|320116190|ref|YP_004186349.1| GTP-binding protein Era [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226741400|sp|B0KA54|ERA_THEP3 RecName: Full=GTPase Era gi|226741401|sp|B0K708|ERA_THEPX RecName: Full=GTPase Era gi|166854225|gb|ABY92634.1| GTP-binding protein Era [Thermoanaerobacter sp. X514] gi|166856609|gb|ABY95017.1| GTP-binding protein Era [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749174|gb|EEU62208.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus CCSD1] gi|300889010|gb|EFK84156.1| GTP-binding protein Era [Thermoanaerobacter sp. X561] gi|307581753|gb|ADN55152.1| GTP-binding protein Era [Thermoanaerobacter sp. X513] gi|319929281|gb|ADV79966.1| GTP-binding protein Era [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 302 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 159/279 (56%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G VALVG TN GKSTL+N + K++I + K QTTR+ +RGI++ E Q++F+DTPGI Sbjct: 4 KAGFVALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + MI ++ T+K D++ +++ E+ +++ + + + +IL++NKI Sbjct: 64 HKPKSKLSEFMIEVAKRTLKEVDLILYMIEPDTEVGPGDRYIIEHLKEVDTPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V +R+ E +I + + +SA + D + + S LP P Y D I+D Sbjct: 124 DLVPEKRVEETIKIFKEQYEFKDVVAISAIENKNIDLLKEKIVSLLPEGPKYYLDDYITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AEI REK+ L +E+P+ V E +E++D I+ I IY E+ S K I+ Sbjct: 184 QPEKLIVAEIIREKMLHFLEEEVPHGVYVEVESIKEREDKDIIDIEAYIYCEKESHKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNGQ +K I A+ ++ E + V L L+VK +K W Sbjct: 244 IGKNGQMLKKIGQSARLDLEEFYGKQVFLDLWVKTRKGW 282 >gi|323340794|ref|ZP_08081046.1| GTP-binding protein Era [Lactobacillus ruminis ATCC 25644] gi|323091917|gb|EFZ34537.1| GTP-binding protein Era [Lactobacillus ruminis ATCC 25644] Length = 300 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 163/277 (58%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG +A++G N GKST +NR +G K++I++ K QTTR+ ++GI + ++QIVF+DTPGI Sbjct: 7 SGFIAILGRPNVGKSTFLNRIIGQKIAIMSDKAQTTRNKIQGIYTTDDAQIVFIDTPGIH 66 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + M+ + ST+ D V +V++ ++ +++ + + L +NKID Sbjct: 67 KPQSRLGDFMVESALSTLNEVDAVIFMVNAEQKRGRGDDFIIERLKNVKKPIYLAINKID 126 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 + P+ LLE + + + F +SA +G+ C + ++ L LP P Y DQ++D Sbjct: 127 RIHPDHLLEVMDDYRGALDFKDVFPISALQGNNCQEFIDTLIKDLPEGPQYYPTDQVTDH 186 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P E+ REK+ +E+P+S VV ++ + + + ILI+ I VER SQK I++G Sbjct: 187 PERFIAGELIREKVLELTREEVPHSVAVVVDRIKRRDEEKILIQATIIVERASQKGIIIG 246 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K G+ +KTI ++A+K+I ++ V+L L+VKV +W Sbjct: 247 KGGKMLKTIGVKARKDIELMMGDKVYLELWVKVMPNW 283 >gi|313891295|ref|ZP_07824913.1| ribosome biogenesis GTPase Era [Streptococcus pseudoporcinus SPIN 20026] gi|313120362|gb|EFR43483.1| ribosome biogenesis GTPase Era [Streptococcus pseudoporcinus SPIN 20026] Length = 299 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + ++ QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEQEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLRNAKIPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ +++ L L + ADQI+D Sbjct: 124 DKVHPDQLLEQIDDFRSQMDFKEIVPISALEGNNIPTLMSLLTDNLEEGFQYFPADQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-ILIRQVIYVERPSQKKIM 259 P +E+ REK+ +EIP+S VV E + +D + IR I VER SQK I+ Sbjct: 184 HPERFLVSEMIREKVLHLTQQEIPHSVAVVIESMKRDEDSDKVHIRATIMVERDSQKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 244 IGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNW 282 >gi|146319051|ref|YP_001198763.1| GTP-binding protein Era [Streptococcus suis 05ZYH33] gi|146321257|ref|YP_001200968.1| GTP-binding protein Era [Streptococcus suis 98HAH33] gi|223932650|ref|ZP_03624649.1| GTP-binding protein Era [Streptococcus suis 89/1591] gi|253752114|ref|YP_003025255.1| GTP-binding protein Era homolog [Streptococcus suis SC84] gi|253753939|ref|YP_003027080.1| GTP-binding protein Era homolog [Streptococcus suis P1/7] gi|253755186|ref|YP_003028326.1| GTP-binding protein Era homolog [Streptococcus suis BM407] gi|330832408|ref|YP_004401233.1| GTP-binding protein Era [Streptococcus suis ST3] gi|189037678|sp|A4W2H9|ERA_STRS2 RecName: Full=GTPase Era gi|189037680|sp|A4VW74|ERA_STRSY RecName: Full=GTPase Era gi|145689857|gb|ABP90363.1| GTPase [Streptococcus suis 05ZYH33] gi|145692063|gb|ABP92568.1| GTPase [Streptococcus suis 98HAH33] gi|223898620|gb|EEF64982.1| GTP-binding protein Era [Streptococcus suis 89/1591] gi|251816403|emb|CAZ52034.1| GTP-binding protein Era homolog [Streptococcus suis SC84] gi|251817650|emb|CAZ55398.1| GTP-binding protein Era homolog [Streptococcus suis BM407] gi|251820185|emb|CAR46552.1| GTP-binding protein Era homolog [Streptococcus suis P1/7] gi|292558696|gb|ADE31697.1| Small GTP-binding protein Era [Streptococcus suis GZ1] gi|319758490|gb|ADV70432.1| GTP-binding protein Era [Streptococcus suis JS14] gi|329306631|gb|AEB81047.1| GTP-binding protein Era [Streptococcus suis ST3] Length = 299 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 164/280 (58%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + +E QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNYVMGQKIAIMSDKAQTTRNKIMGIYTTEEEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + + +++ + + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLKQAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + + ++ +SAT+G+ + ++ L L + ADQI+D Sbjct: 124 DKVHPDQLLEQIDDFRQQMDFKEIVPISATQGNNVNRLMEILKENLDEGFQYFPADQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +EIP+S VV E K +E D + IR I VER SQK I Sbjct: 184 HPERFLVSEMIREKVLHLTREEIPHSVAVVIESMKRDEFTD-KVHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 243 IIGKQGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|298480162|ref|ZP_06998360.1| GTP-binding protein Era [Bacteroides sp. D22] gi|298273443|gb|EFI15006.1| GTP-binding protein Era [Bacteroides sp. D22] Length = 293 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + E QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDEMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D N ++ ++++ + + ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALTDADILLYVTDVVETPDKN-NEFMEKVRQMTVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L++ E +L+ + +SAT D V+ + LP +P + DQ +D Sbjct: 122 DLTDQEKLVKLVEDWKELLPQAEIIPISATSKFNVDYVMKRIKELLPNSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+ +++ I IR VI VER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEE-FKEEPKKIHIRAVINVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++E+ + + L +VKV KDW Sbjct: 241 GKQGKALKKVATEARRELERFFGKTIFLETYVKVDKDW 278 >gi|297172694|gb|ADI23661.1| GTPase [uncultured Gemmatimonadales bacterium HF4000_15H13] Length = 317 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 156/281 (55%), Gaps = 3/281 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R+G V LVG NAGKSTL+NR +G +SIVT K QTT V GI++ Q++FLDTP Sbjct: 16 TTRAGYVTLVGRPNAGKSTLLNRLIGEHLSIVTAKAQTTWQRVTGILTTGSDQLIFLDTP 75 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-IHDLLKEIAKRSSRLILIL 137 G+ D + + M+ + + AD+V LV+D R+ ++ + + + + + L Sbjct: 76 GLLEVHDLFQRAMLGAALQALSEADVVLLVIDCTRKPSPQETARIVHAVEEAQAPIHVAL 135 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID E+ +E E VSA G G D++L + S LP P++Y D Sbjct: 136 NKIDEAD-EQQIEAWERWLAGHVPGALHQVSAADGSGVDELLEAVRSALPEGPFLYPEDD 194 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+ P+ F AE+ RE +F H+EIPYS E++ E ++ I I+ ++VER SQK Sbjct: 195 IASDPVRFFVAELVRETIFEQYHQEIPYSVFCQVEEYREAQE-PIYIQMNVFVERKSQKG 253 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G I+ + ++++I L V+L L+V+ + W Sbjct: 254 ILIGKKGAAIRALGERSREKIEHFLGARVYLDLWVRPLRAW 294 >gi|288818281|ref|YP_003432629.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|288787681|dbj|BAI69428.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|308751878|gb|ADO45361.1| GTP-binding protein Era [Hydrogenobacter thermophilus TK-6] Length = 302 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 176/292 (60%), Gaps = 10/292 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIF 81 G VA+VG N GKSTL+N+ +G KVSIV+ K TTR + G+ + E+QIVFLDTPGI+ Sbjct: 4 GYVAIVGKPNVGKSTLLNQIIGTKVSIVSPKPGTTRIRILGVKNIPDEAQIVFLDTPGIY 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 KD+ + M++++ ++++ ADI+ ++D+ + ++ + +K +A+ + L++ Sbjct: 64 RPKDALGEAMVQVASASLQDADIILFMIDAEDGWLEDDELVFSNYIKPLAQ-EKHIFLVI 122 Query: 138 NKIDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK+D V + L EI K ++ +SA KG+ D++L + LP ++ Sbjct: 123 NKVDRVGHVSQVLPLAEEIIKKHGEFKEVLPISALKGYNIDELLKTILKYLPDGKPLFPP 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYS-SCVVTEKWEEKKDGSIL-IRQVIYVERP 253 + ++DLP+ AEI REK+ + +H+EIP + V+TE E +D S+L I+ I V+R Sbjct: 183 EMLTDLPLRLLAAEIVREKVLMKIHQEIPQGVAVVITEISEGTRDPSVLVIKGEIVVDRE 242 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 + K I++GK GQ +K+I A++E+ I + V+L L+VKV+ DW P+ Sbjct: 243 NYKPIIIGKGGQRLKSIGKLAREELELITGRKVYLELWVKVKPDWRKRPELV 294 >gi|29349243|ref|NP_812746.1| GTP-binding protein Era [Bacteroides thetaiotaomicron VPI-5482] gi|253573090|ref|ZP_04850481.1| GTP-binding protein Era [Bacteroides sp. 1_1_6] gi|298384784|ref|ZP_06994343.1| GTP-binding protein Era [Bacteroides sp. 1_1_14] gi|29341151|gb|AAO78940.1| putative GTP-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251837313|gb|EES65413.1| GTP-binding protein Era [Bacteroides sp. 1_1_6] gi|298261928|gb|EFI04793.1| GTP-binding protein Era [Bacteroides sp. 1_1_14] Length = 293 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 102/278 (36%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + + QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNALVGERISIATFKAQTTRHRIMGIYNTDDMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D N ++ + ++ + + ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALTDADVLLYVTDVVETPDKN-NEFMGKVRQMTVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L++ E +L+ + +SA D V+ + LP +P + DQ +D Sbjct: 122 DLTDQEKLIKLVEEWKELLPQAEIIPISAASKFNVDYVMKRIQELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+ +++ I IR VIYVER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEE-FKEEAKKIHIRAVIYVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++E+ + + L +VKV KDW Sbjct: 241 GKQGKALKKVATEARRELERFFGKTIFLETYVKVDKDW 278 >gi|332522204|ref|ZP_08398456.1| ribosome biogenesis GTPase Era [Streptococcus porcinus str. Jelinkova 176] gi|332313468|gb|EGJ26453.1| ribosome biogenesis GTPase Era [Streptococcus porcinus str. Jelinkova 176] Length = 299 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + ++ QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEQEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDEMIMERLKNAKIPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ +++ L L + ADQI+D Sbjct: 124 DKVHPDQLLEQIDDFRSQMDFKEIVPISALEGNNIPTLMSLLTDNLEEGFQYFPADQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKIM 259 P +E+ REK+ +EIP+S VV E + +D + IR I VER SQK I+ Sbjct: 184 HPERFLVSEMIREKVLHLTQQEIPHSVAVVIESMKRDEDTDKVHIRATIMVERDSQKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 244 IGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNW 282 >gi|330822063|ref|XP_003291620.1| hypothetical protein DICPUDRAFT_39284 [Dictyostelium purpureum] gi|325078185|gb|EGC31850.1| hypothetical protein DICPUDRAFT_39284 [Dictyostelium purpureum] Length = 398 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 167/306 (54%), Gaps = 25/306 (8%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N++ +A++GA NAGKSTLVN VG KV V+H TTR + G+ +E ++Q++F DTP Sbjct: 89 NAKKLNIAVIGAPNAGKSTLVNAIVGEKVCAVSHIEHTTRDAILGVYTEGDTQLLFNDTP 148 Query: 79 GI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-------IHDLLKEIAK 128 G+ FN K++ + + L+W+T+K +D+V +VVD+ + + + D + E+ K Sbjct: 149 GMIKNFN-KNTNVREFVNLAWTTVKESDLVLMVVDATNNNQPDTKYIINHLEDQMIELLK 207 Query: 129 RSS-------------RLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 ++ IL++NK+D V K E L+E N+ TF+VSAT Sbjct: 208 KAKLEDIENGEIEDEKDFILVINKVDLVRKKEDLVELISELNEGNIFSDTFVVSATNNVK 267 Query: 175 CDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW 234 D + YL L W++ + +D +EI +EKL+ L EIPY T W Sbjct: 268 LDSLKEYLVGKAKLGQWIFEEEVKTDQTDIFRASEIIKEKLYSKLKDEIPYKVIQSTRGW 327 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 KDG++ I Q V + S K ++LGK+G IK+I LEAKK++ ++ + VHL L VK Sbjct: 328 TPTKDGALRIDQDFIVTKASHKSLILGKDGSVIKSIYLEAKKDLEKVFNKRVHLFLTVKE 387 Query: 295 QKDWGH 300 ++ H Sbjct: 388 KQSTEH 393 >gi|237712744|ref|ZP_04543225.1| GTP-binding protein Era [Bacteroides sp. D1] gi|262408119|ref|ZP_06084666.1| GTP-binding protein Era [Bacteroides sp. 2_1_22] gi|293369491|ref|ZP_06616070.1| GTP-binding protein Era [Bacteroides ovatus SD CMC 3f] gi|294644224|ref|ZP_06721994.1| GTP-binding protein Era [Bacteroides ovatus SD CC 2a] gi|294808598|ref|ZP_06767338.1| GTP-binding protein Era [Bacteroides xylanisolvens SD CC 1b] gi|229447221|gb|EEO53012.1| GTP-binding protein Era [Bacteroides sp. D1] gi|262353671|gb|EEZ02764.1| GTP-binding protein Era [Bacteroides sp. 2_1_22] gi|292635376|gb|EFF53889.1| GTP-binding protein Era [Bacteroides ovatus SD CMC 3f] gi|292640434|gb|EFF58682.1| GTP-binding protein Era [Bacteroides ovatus SD CC 2a] gi|294444197|gb|EFG12924.1| GTP-binding protein Era [Bacteroides xylanisolvens SD CC 1b] gi|295088053|emb|CBK69576.1| GTP-binding protein Era [Bacteroides xylanisolvens XB1A] Length = 293 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + E QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDEMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D N ++ ++++ + + ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALTDADILLYVTDVVETPDKN-NEFMEKVRQMTVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L++ E +L+ + +SAT D V+ + LP +P + DQ +D Sbjct: 122 DLTDQEKLVKLVEDWKELLPQAEIIPISATSKFNVDYVMKRIKELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+ +++ I IR VI VER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEE-FKEEPKKIHIRAVINVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++E+ + + L +VKV KDW Sbjct: 241 GKQGKALKKVATEARRELERFFGKTIFLETYVKVDKDW 278 >gi|225570970|ref|ZP_03779993.1| hypothetical protein CLOHYLEM_07074 [Clostridium hylemonae DSM 15053] gi|225160432|gb|EEG73051.1| hypothetical protein CLOHYLEM_07074 [Clostridium hylemonae DSM 15053] Length = 311 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 166/290 (57%), Gaps = 3/290 (1%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 +E + ++ + +SG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ ++ Sbjct: 8 DEKGERMKKDFKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTLQD 67 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 QIVF+DTPGI AK+ + M+ ++ T+ D+V +V+ + + +++ K Sbjct: 68 GQIVFVDTPGIHKAKNKLGEYMVNIAERTLNEVDVVLWLVEPSTFIGAGERHIAEQLKKV 127 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ++ +IL++NK+D VK E +LE + + VSA G D++++ + LP Sbjct: 128 NTPVILVINKVDMVKKEEILEAISAYKDIYDFAEIVPVSARNGDNTDELMSVVMKYLPYG 187 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVI 248 P Y D ++D P AE+ REK L++EIP+ V + K++ ++ I I Sbjct: 188 PQFYDEDTVTDQPERQIVAELIREKALHSLNEEIPHGIAVAVDSM--KRNRKVMHIDATI 245 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ER S K I++GK G +K I A+ EI ++L V+L L+VKV+KDW Sbjct: 246 ICERDSHKGIIIGKQGNMLKKIGSTARFEIEKMLGCQVNLKLWVKVKKDW 295 >gi|160882377|ref|ZP_02063380.1| hypothetical protein BACOVA_00326 [Bacteroides ovatus ATCC 8483] gi|237719051|ref|ZP_04549532.1| GTP-binding protein Era [Bacteroides sp. 2_2_4] gi|260172014|ref|ZP_05758426.1| GTP-binding protein Era [Bacteroides sp. D2] gi|299148135|ref|ZP_07041197.1| GTP-binding protein Era [Bacteroides sp. 3_1_23] gi|315920327|ref|ZP_07916567.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112190|gb|EDO13935.1| hypothetical protein BACOVA_00326 [Bacteroides ovatus ATCC 8483] gi|229451430|gb|EEO57221.1| GTP-binding protein Era [Bacteroides sp. 2_2_4] gi|298512896|gb|EFI36783.1| GTP-binding protein Era [Bacteroides sp. 3_1_23] gi|313694202|gb|EFS31037.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 293 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 159/278 (57%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI T K QTTR + GI + E QIVF DTPG+ Sbjct: 3 KAGFVNIVGNPNVGKSTLMNVLVGERISIATFKAQTTRHRIMGIYNTDEMQIVFSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D N ++ ++++ + + ++L++NKI Sbjct: 63 LKPNYKLQESMLNFSTSALTDADILLYVTDVVETPDKN-NEFMEKVRQMTVPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L++ E +L+ + +SAT D V+ + LP +P + DQ +D Sbjct: 122 DLTDQEKLVKLVEEWKELLPQAEIIPISATSKFNVDYVMKRIKELLPDSPPYFGKDQWTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+ +++ I IR VI VER SQK I++ Sbjct: 182 KPARFFVNEIIREKILLYYDKEIPYSVEVVVEE-FKEEPKKIHIRAVINVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K ++ EA++E+ + + L +VKV KDW Sbjct: 241 GKQGKALKKVATEARRELERFFGKTIFLETYVKVDKDW 278 >gi|288941441|ref|YP_003443681.1| GTP-binding protein Era [Allochromatium vinosum DSM 180] gi|288896813|gb|ADC62649.1| GTP-binding protein Era [Allochromatium vinosum DSM 180] Length = 307 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 163/284 (57%), Gaps = 4/284 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR G VA++G N GKSTL+NR +G K++I +HK QTTR + GI + QI+F+DTPG Sbjct: 15 SRCGTVAIIGRPNVGKSTLLNRILGQKLAITSHKAQTTRHAILGIKTRAGGQILFVDTPG 74 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 I + ++ + R + + + D+ LVV++ R + + L A +I ++N Sbjct: 75 IHERGGSALNRYLNRAARAAVADTDLALLVVEAGRWTEEDAKALEAIAAA-GVPVIAVVN 133 Query: 139 KIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D + + LL + + +VSATKG + + + +LP V+ DQ Sbjct: 134 KVDRIADKSTLLPYLQALGERHAFRHVVLVSATKGDQVETLERLIVESLPEGEPVFPEDQ 193 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D F AE+ RE+L KE+PY + V E++ E DG LI +I+VERP QK Sbjct: 194 LTDRSERFFAAELVREQLMQRYGKELPYCTTVEIERF-EMADGRYLIHALIWVERPGQKG 252 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK+G+ +K ++ +A+ E+ ++ + PVHL ++VKV+K W D Sbjct: 253 IIIGKHGEALKAVATQARLEMQKLFDCPVHLEVWVKVKKSWSSD 296 >gi|242078515|ref|XP_002444026.1| hypothetical protein SORBIDRAFT_07g006070 [Sorghum bicolor] gi|241940376|gb|EES13521.1| hypothetical protein SORBIDRAFT_07g006070 [Sorghum bicolor] Length = 435 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 163/291 (56%), Gaps = 11/291 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q++ S V +VGA NAGKS+L N VG KV+ V+ K TT + G++++ +QI F D Sbjct: 141 QEDQMSLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGNTQICFFD 200 Query: 77 TPGIFNAKDS--YHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---- 128 TPG+ Y + +R+ +WS+I D++ ++ D +R L + ++K I + Sbjct: 201 TPGLMLGHHGFPYRDVTVRVESAWSSINLYDLLIVMFDVNRHLTLPDSRVIKLIKRLGME 260 Query: 129 --RSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + R IL +NK+D VK ++ LL+ A+ L E+ FMVS KG G D++ YL Sbjct: 261 VNPNQRRILCMNKVDLVKDKKDLLKVAKEFEDLPGYERYFMVSGLKGKGVKDLVQYLMDQ 320 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW +++ M + E+ REK+ H+H+EIPY W+E KDGS+ + Sbjct: 321 AVRRPWDEEPTVMTEEVMKTISLEVVREKMLHHIHQEIPYVIEHRLMGWKELKDGSLRVE 380 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 Q + SQ++I++GKNG I I +EA +E+ I ++ VHLIL V+V K Sbjct: 381 QHFIAPKQSQRQILVGKNGSKIGRIGIEANEELRSIFKRDVHLILQVRVAK 431 >gi|227500710|ref|ZP_03930759.1| GTP-binding protein Era [Anaerococcus tetradius ATCC 35098] gi|227217168|gb|EEI82517.1| GTP-binding protein Era [Anaerococcus tetradius ATCC 35098] Length = 293 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 167/288 (57%), Gaps = 2/288 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+ + +G K+SI+++K QTTR ++ I +++ESQI+FLDTPGI Sbjct: 3 KSGFVSVVGRANVGKSTLMEKILGEKISIISNKAQTTRDKIQIIYNDEESQIIFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ + ++ S ++K +DIV ++VD E+ ++L + K IL++NK Sbjct: 63 QTPRNKLQEKLLTFSEESLKESDIVTMIVDDSLEIGRIDTEILAMLDKIKLPKILLINKT 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + ++ +E+ + ++ +SA +G D + + L P Y D I+D Sbjct: 123 DLLAKDK-IEKIRANFRAYDFDRILEISALEGKNVDIYIKTVKDMLDFGPAYYDRDMITD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 +EI REK +L +E+P+ V + ++E+ D +++ IR I +E+ S K+I+ Sbjct: 182 RSERFIVSEIIREKALRNLSEEVPHGVAVRIDDFKERPDKNLIDIRATIVIEKVSHKEIV 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GK G IK I ++A+ EI + L+ V+L L+VKV+KDW K + Sbjct: 242 IGKKGSMIKKIGMDARSEIEKFLDSKVNLQLWVKVEKDWRKKEKLVDR 289 >gi|153853792|ref|ZP_01995148.1| hypothetical protein DORLON_01139 [Dorea longicatena DSM 13814] gi|149753542|gb|EDM63473.1| hypothetical protein DORLON_01139 [Dorea longicatena DSM 13814] Length = 298 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 159/280 (56%), Gaps = 1/280 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + +SG V L+G N GKSTL+N+ +G K++I ++K QTTR+ ++ +++ + QIVF+DTP Sbjct: 4 DYKSGFVTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTDDGQIVFVDTP 63 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI AK+ + M+ ++ T+ D+V +V+ + ++ ++ K ++ ++L++N Sbjct: 64 GIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPTTFIGAGEQHIISQLKKVTTPVVLVIN 123 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID VK E +L + + VSA G D+++ + LP P Y D I Sbjct: 124 KIDSVKKEDVLPAIAAYKDVYDFAEIVPVSARNGDNTDELVKVIMKYLPYGPQFYDEDTI 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P AE+ REK L +EIP+ V + + ++ + I I ER S K I Sbjct: 184 TDQPERQIVAELIREKALHCLQEEIPHGIAVAIDSM-KVRNKVMHIDATIICERDSHKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+ EI ++L+Q V+L L+VKV+KDW Sbjct: 243 IIGKKGSMLKKIGSTARYEIEKMLDQQVNLKLWVKVKKDW 282 >gi|87301104|ref|ZP_01083945.1| GTP-binding protein Era [Synechococcus sp. WH 5701] gi|87284072|gb|EAQ76025.1| GTP-binding protein Era [Synechococcus sp. WH 5701] Length = 343 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 161/300 (53%), Gaps = 21/300 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VAL+G N GKSTL+N VG KV+I + QTTR+ +R I++ +Q+V LDTPGI Sbjct: 36 RSGFVALIGRPNVGKSTLLNHLVGEKVAITSPVAQTTRNRLRAILTTPSAQLVLLDTPGI 95 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNK 139 + +++ + S I D+V L+VD E + E+ + S +L+ LNK Sbjct: 96 HKPHHLLGERLVKSARSAIGEVDVVLLLVDGS-EPAGRGDGFIVELLRFSRAPVLVALNK 154 Query: 140 IDCVKPERLLE-QAEIANKLVFIEKT---------------FMVSATKGHGCDDVLNYLC 183 D V PER E +A LV ++ SA+ G GC +++ L Sbjct: 155 SDLVDPERAAELEASYRELLVLSDQRADPADPGQRRSDWPLLACSASTGAGCPELVEALA 214 Query: 184 STLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-I 242 + LPL P +Y D +SD P AE+ RE++ +E+P+S V E+ E DG I Sbjct: 215 ARLPLGPHLYPPDAVSDQPEQLLLAELIREQVLSLTREEVPHSVAVQVERIVE--DGKRI 272 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 + + VER SQK I++GK GQ +K I A+ ++ ++ + PV+L LFVKV +W +P Sbjct: 273 AVLATVLVERSSQKGILIGKRGQMLKEIGSGARAQMQKVFDGPVYLELFVKVVPNWRRNP 332 >gi|197303325|ref|ZP_03168365.1| hypothetical protein RUMLAC_02048 [Ruminococcus lactaris ATCC 29176] gi|197297609|gb|EDY32169.1| hypothetical protein RUMLAC_02048 [Ruminococcus lactaris ATCC 29176] Length = 300 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 162/283 (57%), Gaps = 1/283 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++N +SG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ +E QIVF+ Sbjct: 1 MKENFKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M+ ++ ++ D+V +V+ + +++++ K + +IL Sbjct: 61 DTPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSNFIGAGEKHIIEQLKKVKTPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID VK E +L + K + VSA G D+++ + + LP P Y Sbjct: 121 VINKIDMVKREEILAFIDTYRKEYDFAEIVPVSARTGDNTDELVKVILNYLPYGPQFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P AE+ REK L++EIP+ V ++ + K I I ER S Sbjct: 181 DTVTDQPERQIVAELIREKALHCLNEEIPHGIAVAIDQMKMNKK-VCHIDATIICERDSH 239 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ EI +L+ V+L L+VKVQK+W Sbjct: 240 KGIIIGKQGSMLKKIGSTARYEIERLLDCKVNLKLWVKVQKNW 282 >gi|126700053|ref|YP_001088950.1| GTP-binding protein Era [Clostridium difficile 630] gi|254976030|ref|ZP_05272502.1| GTP-binding protein Era [Clostridium difficile QCD-66c26] gi|255093418|ref|ZP_05322896.1| GTP-binding protein Era [Clostridium difficile CIP 107932] gi|255307465|ref|ZP_05351636.1| GTP-binding protein Era [Clostridium difficile ATCC 43255] gi|255315163|ref|ZP_05356746.1| GTP-binding protein Era [Clostridium difficile QCD-76w55] gi|255517832|ref|ZP_05385508.1| GTP-binding protein Era [Clostridium difficile QCD-97b34] gi|255650948|ref|ZP_05397850.1| GTP-binding protein Era [Clostridium difficile QCD-37x79] gi|255656417|ref|ZP_05401826.1| GTP-binding protein Era [Clostridium difficile QCD-23m63] gi|260684017|ref|YP_003215302.1| GTP-binding protein [Clostridium difficile CD196] gi|260687677|ref|YP_003218811.1| GTP-binding protein [Clostridium difficile R20291] gi|296450136|ref|ZP_06891897.1| GTP-binding protein Era [Clostridium difficile NAP08] gi|296878517|ref|ZP_06902522.1| GTP-binding protein Era [Clostridium difficile NAP07] gi|306520828|ref|ZP_07407175.1| GTP-binding protein [Clostridium difficile QCD-32g58] gi|122973603|sp|Q182C3|ERA_CLOD6 RecName: Full=GTPase Era gi|115251490|emb|CAJ69323.1| GTP-binding protein Era [Clostridium difficile] gi|260210180|emb|CBA64374.1| GTP-binding protein [Clostridium difficile CD196] gi|260213694|emb|CBE05565.1| GTP-binding protein [Clostridium difficile R20291] gi|296260899|gb|EFH07733.1| GTP-binding protein Era [Clostridium difficile NAP08] gi|296430324|gb|EFH16166.1| GTP-binding protein Era [Clostridium difficile NAP07] Length = 297 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 168/280 (60%), Gaps = 2/280 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N VG K++I++ K QTTR+ ++ + +++E QIVFLDTPGI Sbjct: 3 KSGFVSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ + M++ + K+ D++ VVD +++ +++++ + +IL++NKI Sbjct: 63 HKPKNKLGEFMVKAATEAFKNVDLILFVVDDSKKIGPGDRKIIEDLRSVKTPIILVVNKI 122 Query: 141 DCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + + + L + ++ ++ ++ +SA KG D ++ + + L P + I+ Sbjct: 123 DQLDQKDELFDIIKMYDREGIFKEIVPISALKGKNTDTLIKVIQNYLEEGPKYFPDYMIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D P AE+ REK+ +L+ EIP+ V EK + + D I+ + VIY ER S K I Sbjct: 183 DQPERVLIAELIREKVLHYLNDEIPHGVAVEIEKMKARNDKEIVDVSAVIYCERDSHKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GKNG+ +K I A+++I +L ++L L+VKV+++W Sbjct: 243 IIGKNGRKLKGIGKSARQDIELLLGSQINLQLWVKVKENW 282 >gi|315640637|ref|ZP_07895743.1| GTP-binding protein Era [Enterococcus italicus DSM 15952] gi|315483665|gb|EFU74155.1| GTP-binding protein Era [Enterococcus italicus DSM 15952] Length = 298 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 169/279 (60%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+NR VG K++I++ K QTTR+ ++G+ + K++QIVF+DTPGI Sbjct: 5 KSGFVALVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTKDAQIVFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ ++S + D++ ++ + ++ +++ + K+S + L++NK+ Sbjct: 65 HKPKSRLGDFMVESAFSALNEVDVILFMISADQKRGKGDDLIIERLKKQSVPVFLVVNKL 124 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V P+ LLE A+ + ++ F E +SAT+G+ ++ + L P + DQ++ Sbjct: 125 DKVHPDALLEVIADYSQQMDFAE-VVPISATEGNNFPTLMATIEKELEEGPQYFPEDQVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P + +E+ REK+ E+P+S VV + ++ ++ I I+ I VER SQK I+ Sbjct: 184 DHPEYFIVSELIREKVLQFTRDEVPHSVAVVVDSMKKNENEKIAIQATIIVERDSQKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G+ +K I +A+ +I +L V L L+VKVQKDW Sbjct: 244 IGKGGKMLKLIGTKARLDIEHLLGNKVFLELWVKVQKDW 282 >gi|256825020|ref|YP_003148980.1| GTP-binding protein Era [Kytococcus sedentarius DSM 20547] gi|256688413|gb|ACV06215.1| GTP-binding protein Era [Kytococcus sedentarius DSM 20547] Length = 310 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 159/298 (53%), Gaps = 15/298 (5%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+ R+G V VG NAGKSTL N VG K++I ++K QTTR VRGI+ ++ SQIV +DT Sbjct: 9 DDFRAGFVCFVGRPNAGKSTLTNALVGQKIAITSNKPQTTRHTVRGIIGDEASQIVVVDT 68 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIV--CLVVD-----SHRELKVNIHDLLKEIAKRS 130 PG+ + + + + T+ D++ C+ D + + + +L + R Sbjct: 69 PGLHKPRTLLGQRLNDVVRETLLDVDVIGFCMPADQKPGPGDKYIAAELEELRR---GRR 125 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + +I I K D V ++L E ++L ++ SA G D V + LPL+P Sbjct: 126 TPIIAIATKADLVSRDQLAEHLMAIDQLGDFDEIVPCSAVNGEQLDVVRRLITEKLPLSP 185 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIR 245 +Y D ++D P AE+ RE + E+P+S VV E+ ++D + +R Sbjct: 186 PLYPEDVLTDEPTDVMIAELVREAALEGVRDEMPHSLAVVVEEMLPREDRPADKPLMDVR 245 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ++VERPSQK I++GK G ++ + ++K I E+L Q VHL L VKV KDW DPK Sbjct: 246 VNVFVERPSQKAIIIGKGGSRLREVGTTSRKAIEELLGQRVHLDLHVKVAKDWQRDPK 303 >gi|227498623|ref|ZP_03928767.1| GTP-binding protein era [Acidaminococcus sp. D21] gi|226904079|gb|EEH89997.1| GTP-binding protein era [Acidaminococcus sp. D21] Length = 306 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 162/283 (57%), Gaps = 1/283 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q R+G +A++G NAGKSTL+++ +G K +IV+ + QTTR+ + I+S +++Q++FLD Sbjct: 5 QQEHRAGYIAVIGRPNAGKSTLIDKLIGEKAAIVSDRPQTTRNRILCILSTEKAQLIFLD 64 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ KD + M++ + ++K D V VVD+ + +L+ + K +IL+ Sbjct: 65 TPGLHKPKDKLGEHMVKAAEDSLKDVDAVLYVVDATEKRGKGEAYILERLKKVQVPVILV 124 Query: 137 LNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 LNK+D + + E LL + + K +SA + ++ L +P P Y Sbjct: 125 LNKVDLINQKENLLPRIDAFQKAYPFHGIMTLSALEDRDFTPLIEELTGLMPEGPSFYPE 184 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D +D +EI REK+ H E+P++ V + + + +G + +R IYVER SQ Sbjct: 185 DLYTDQTERVMVSEIIREKILRLTHDEVPHAVAVKVNEMKTRDNGMVYVRADIYVERDSQ 244 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G+ GQ +K IS EA+K+I +++ V+L ++VKV+ W Sbjct: 245 KGILIGRKGQMLKQISAEARKDIEDLVGSQVYLEIWVKVRPKW 287 >gi|168064687|ref|XP_001784291.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664167|gb|EDQ50897.1| predicted protein [Physcomitrella patens subsp. patens] Length = 300 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 104/287 (36%), Positives = 162/287 (56%), Gaps = 16/287 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G VALVG NAGKSTL+N+ +G K+SIVT+K QTTR + GI S + Q+V DTPG+ Sbjct: 2 AGYVALVGKPNAGKSTLLNQIIGQKLSIVTNKPQTTRHRILGICSGPDYQMVLYDTPGVI 61 Query: 82 NAK-DSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++M+R + +AD V +VVD+ E+ + D + + + +L+L Sbjct: 62 SKQVKKLDEMMMRNVRTATLNADCVLIVVDACEQPEEVMSRLTDGQQTLVTDNRPTLLVL 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIE------KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 NK D +KP EIA K + E + VSA +G G D + +L LP P Sbjct: 122 NKKDLIKP------GEIAKKKAWYELNGGTTEVIAVSAKQGAGVDKIKEWLLGRLPYGPA 175 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 Y D +S+ P F +EI REK+FL +EIPY V + E++ I+ I VE Sbjct: 176 YYPKDVVSEHPERFFVSEILREKIFLQYRQEIPYVCQVNVTSYMERRVAKDFIQLEIVVE 235 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + QK I+LGK G+++K ++ A+ +I + + + V++ + VKV++DW Sbjct: 236 KEGQKGILLGKGGESLKMLATAARLDIEDFVGKEVYVEIKVKVKEDW 282 >gi|326389849|ref|ZP_08211413.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus JW 200] gi|325994117|gb|EGD52545.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus JW 200] Length = 302 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 158/279 (56%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G VALVG TN GKSTL+N + K++I + K QTTR+ + GI++ E Q++F+DTPGI Sbjct: 4 KAGFVALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + MI ++ T+K D++ +++ E+ +++ + + + +IL++NKI Sbjct: 64 HKPKSKLSEFMIEVAKRTLKEVDLILYMIEPDTEVGPGDRYIIEHLKEVDTPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V ER+ E +I + + +SA + D + + S LP P Y D I+D Sbjct: 124 DLVPEERVEETIKIFKEQYEFKDVVAISAIENKNIDLLKEKIVSLLPEGPKYYLDDYITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AEI REK+ L +E+P+ V E +E++D I+ I IY E+ S K I+ Sbjct: 184 QPEKLIVAEIIREKMLHFLEEEVPHGVYVEVESIKEREDKDIIDIEAYIYCEKESHKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNGQ +K I A+ ++ E + V L L+VK +K W Sbjct: 244 IGKNGQMLKKIGQSARLDLEEFYGKQVFLDLWVKTRKGW 282 >gi|295115531|emb|CBL36378.1| GTP-binding protein Era [butyrate-producing bacterium SM4/1] Length = 301 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 158/294 (53%), Gaps = 11/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + +++ QI+FLDTPGI Sbjct: 6 KSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+ ++ T+K D++ +V+ + + +++ K + +IL++NK Sbjct: 66 HKAKNKLGEYMVSVAEHTLKEVDVILWLVEPTTFIGAGERHIAEQLKKVKTPVILVINKT 125 Query: 141 DCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K E +L + + SA K D V + + LP P Y D ++ Sbjct: 126 DTIKNKEDILTFIAAYKDICEFAEIIPASALKEKNIDAVKDCIFKYLPEGPQFYDEDTVT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D PM AE+ REK L EIP+ V E+ E+K+G I I I ER K I+ Sbjct: 186 DQPMRQIAAELIREKALRMLDDEIPHGIAVTIERMTERKNGMIDIEATIVCERDYHKGII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW----------GHDPK 303 +GK G +K I A+ EI +++ V+L L+VKV+K+W G++PK Sbjct: 246 IGKGGSMLKKIGTAARMEIGNLMDTQVNLKLWVKVRKEWRDSDLFMKNYGYNPK 299 >gi|116627505|ref|YP_820124.1| GTP-binding protein Era [Streptococcus thermophilus LMD-9] gi|116100782|gb|ABJ65928.1| GTPase [Streptococcus thermophilus LMD-9] gi|312278024|gb|ADQ62681.1| GTP-binding protein [Streptococcus thermophilus ND03] Length = 299 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 163/280 (58%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + ++K + + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIKRLKQAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + K + ++ +SA +G+ +++ L L + +DQI+D Sbjct: 124 DKVHPDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +EIP+S VV + K +E+ D ++ IR I VER SQK I Sbjct: 184 HPERFLVSEMIREKVLQLTREEIPHSVAVVIDSMKRDEETD-TVHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+K+I +L V L +VKV+K+W Sbjct: 243 VIGKKGAMLKKIGTLARKDIELMLGDKVFLETWVKVKKNW 282 >gi|304439782|ref|ZP_07399680.1| GTP-binding protein Era [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371769|gb|EFM25377.1| GTP-binding protein Era [Peptoniphilus duerdenii ATCC BAA-1640] Length = 293 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 165/279 (59%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+NR +G ++ V+ K QTTR+ + I S+ +SQI+FLDTPG+ Sbjct: 3 KSGYVAVIGRPNVGKSTLLNRLIGMRILAVSDKAQTTRNKINLIYSDDDSQIIFLDTPGM 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NK 139 ++ M+R S S ++ D++ +VD+ + + +L+++ K + +++L NK Sbjct: 63 QTPRNELGDYMLRESSSALEDVDLITYIVDTSKIIGKQDRAILEKLKKIKDKKVILLINK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + E +L E+ +K + +SA +G G + L+ + LP P Y+ + ++ Sbjct: 123 IDSIPKEDILRLIEMYSKEMDFLDVIPISAREGDGTEIYLDTVKKNLPEGPKYYTDEYVT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D PM AEI REK L +E+P+ V EK EE +D + +I IYVER + K I+ Sbjct: 183 DRPMKFIVAEIIREKALRFLQEEVPHGVAVEIEKMEELEDRTNII-ATIYVERDNHKGII 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNG ++ I +A+ ++ ++L V L ++VKV K+W Sbjct: 242 IGKNGTMLQKIGTQARHDLMDLLMTKVDLRIWVKVDKNW 280 >gi|238060555|ref|ZP_04605264.1| GTP-binding protein Era [Micromonospora sp. ATCC 39149] gi|237882366|gb|EEP71194.1| GTP-binding protein Era [Micromonospora sp. ATCC 39149] Length = 301 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 154/284 (54%), Gaps = 3/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG K++I ++K QTTR I+R ++ +SQ+V +DTPG+ Sbjct: 13 RAGFACFVGRPNAGKSTLTNALVGTKIAITSNKPQTTRHIIRAVLHRPDSQLVLVDTPGL 72 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + L ST D++ L V + + + E+A+ + ++ ++ K Sbjct: 73 HRPRTLLGERLNDLVRSTWSEVDVIGLCVPADEPVGRGDRFITGELAELKATVLAVVTKT 132 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V +RL EQ +++ VSA GH D ++N + LP +P +Y D ++D Sbjct: 133 DLVDKKRLAEQLLAVSEMGDFAAVVPVSAVSGHQLDTLVNVMTDYLPESPQLYPDDMLTD 192 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ RE + E+P+S VV E E +G ++ I +YVERPSQK I+ Sbjct: 193 DPEQVLVAELIREAALEGVRDELPHSIAVVVE--EMIPEGQLMKIYADVYVERPSQKAIV 250 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G +K + A+++I E+L V+L L V+V KDW DPK Sbjct: 251 IGHRASRLKEVGTTARRQIEELLGTRVYLDLHVRVAKDWQRDPK 294 >gi|297181617|gb|ADI17801.1| GTPase [uncultured Sphingobacteriales bacterium HF0130_33B19] Length = 292 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 161/285 (56%), Gaps = 2/285 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + ++G V ++G N GKSTL+N +G K+SI+T K QTTR + GI++EK+ QIVF DTP Sbjct: 2 DHKAGYVNIIGNPNVGKSTLMNALIGHKLSIITPKAQTTRHRILGILNEKDFQIVFSDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ + + M+ +S + AD++ +++ E + L +++ ++++LN Sbjct: 62 GVIDPSYKLQENMMNFVYSALHDADVLIYMIEIG-EKGLKDAKLFEKLKTTDVPVLMLLN 120 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + + +Q EI N + +SA D + L LPL+P + + I Sbjct: 121 KIDLADQDFVSQQMEIWNSKLPNADLLPISALNNFNLDVIKKKLVDMLPLSPPYFDKESI 180 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D FT EI REK+ H KEIPYS + E++ +KD + IR +IYV R +QK I Sbjct: 181 TDKSERFFTEEIIREKILKHYKKEIPYSVQIQVEEFVNEKD-IVKIRAIIYVMRETQKGI 239 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ++G G +K I EA+++I +LE+ V L VK++K+W D K Sbjct: 240 IIGHKGMGLKRIGSEARRDIEAMLEKKVFLETPVKIKKNWRDDNK 284 >gi|223985698|ref|ZP_03635745.1| hypothetical protein HOLDEFILI_03051 [Holdemania filiformis DSM 12042] gi|223962309|gb|EEF66774.1| hypothetical protein HOLDEFILI_03051 [Holdemania filiformis DSM 12042] Length = 298 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 160/278 (57%), Gaps = 1/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G NAGKSTL+N V KV+I++ K QTTR+ +R I ++ +SQI+F+DTPGI Sbjct: 2 KSGFVALIGRPNAGKSTLLNALVQQKVAIISPKPQTTRNSIRAIRTDADSQIIFVDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M + ++S D++ +VD +L + + + LILNKI Sbjct: 62 HKPKHELGTQMNKEAYSAASGVDLIYYLVDGSVPFGSGDEFVLNTLRQMHLPVYLILNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ++ E+L++ + + ++ +SA + D ++ + L Y ADQ+ D Sbjct: 122 DLLEKEQLIDLLLAWQQRMDFKEIIPISAKTQNNLDQLIEVTKNDLTDGVQYYPADQVCD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AEI REK+ L +E+P+S VV E+ + ++ ++I +I VER SQK I++ Sbjct: 182 YPEQFIMAEIIREKVLLLTEEEVPHSVAVVIERIRKNRE-HLIINAMILVERDSQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ IK I A++E+ +L +P+ L LFV+V+KDW Sbjct: 241 GKQGRMIKQIGTLAREELQGLLGEPIFLELFVRVEKDW 278 >gi|295109868|emb|CBL23821.1| GTP-binding protein Era [Ruminococcus obeum A2-162] Length = 302 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 160/285 (56%), Gaps = 2/285 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++N +SG A++G N GKSTL+N +G K++I + K QTTR+ ++ + + + QIVFL Sbjct: 1 MKENFKSGFTAIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCDDGQIVFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M++++ T+K D++ +V+ + + +++ +IL Sbjct: 61 DTPGIHKAKNKLGEYMVQVAERTLKDVDVILWLVEPTTFIGAGERHIAEQLQGLHIPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NK+D V + +L+ + KL ++ SA + +D++ + LP P Y Sbjct: 121 VINKVDTVDKDEILKAIDTYRKLYDFDEIIPCSALRNQNTEDIIPSILKYLPYGPMFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK--KDGSILIRQVIYVERP 253 D ++D P AEI REK L EIP+ V ++ +E+ K+ + I I ER Sbjct: 181 DTVTDQPQRQIAAEIIREKALHALDAEIPHGIAVAIDRMKERPGKNRLVDIDATIICERD 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GK G +K I A+ E+ +L+ V+L L+VKV+KDW Sbjct: 241 SHKGIIIGKQGAMLKKIGSNARYELERMLDAKVNLKLWVKVKKDW 285 >gi|312890130|ref|ZP_07749673.1| GTP-binding protein Era [Mucilaginibacter paludis DSM 18603] gi|311297407|gb|EFQ74533.1| GTP-binding protein Era [Mucilaginibacter paludis DSM 18603] Length = 292 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 159/279 (56%), Gaps = 5/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G V+++G NAGKSTL+N VG K+SI+T K QTTR + GIV+E++ QIVF DTPGI Sbjct: 4 RAGFVSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRILGIVNEEDYQIVFSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M+ ++ AD+V LV D + K + D++ ++ ++ L++I+NKI Sbjct: 64 IKPHYALQETMMHQVSGSLVDADMVLLVTDINE--KYDESDVMDKLKGSTAPLVVIINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E + ++ + + F +SA H ++N + +LP P Y D ++D Sbjct: 122 DKSDEETVKQKIAYWEETLKPTAVFAISALLNHNVQAIMNLVLDSLPEHPPYYEKDFLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 F +EI REK+F KEIPYS+ V+ + E D I I I VER SQK I+ Sbjct: 182 RNDRFFASEIIREKIFKIYEKEIPYSTEVIITAFIE--DPKIYRISAEIIVERDSQKNIL 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G+ +K + A+K++ E ++ V L +FVKV DW Sbjct: 240 IGTGGEMLKKVGTYARKDMEEFFQRKVFLEMFVKVIPDW 278 >gi|295132648|ref|YP_003583324.1| GTP-binding protein [Zunongwangia profunda SM-A87] gi|294980663|gb|ADF51128.1| putative GTP-binding protein [Zunongwangia profunda SM-A87] Length = 294 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 162/279 (58%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG ++SI+T K QTTR + GIV+ ++ Q++ DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQVILSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + M+ S + ADI+ +V+ RELK ++I ++L+LNK Sbjct: 64 IKPAYELQESMMDFVKSAFEDADILVYMVEIGERELKD--EAFFRKIVHAEIPVLLLLNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID E+L EQ + + V + + +SA +G +V + + LP +P Y D ++ Sbjct: 122 IDKSNQEQLEEQVGLWKEKVPNAEIYPISALEGFNVSEVFSRILELLPESPAFYPKDSLT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F EI REK+ LH KEIPY+ + TE++ E++ I +R +I VER +QK I+ Sbjct: 182 DKPERFFVNEIIREKILLHYKKEIPYAVEIDTEEFFEEEK-IIRMRSIIMVERDTQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G +K + +EA+ ++ + + VHL L+VKV K+W Sbjct: 241 IGHKGNALKRVGVEARADLEKFFGKQVHLELYVKVNKNW 279 >gi|289548419|ref|YP_003473407.1| GTP-binding protein Era [Thermocrinis albus DSM 14484] gi|289182036|gb|ADC89280.1| GTP-binding protein Era [Thermocrinis albus DSM 14484] Length = 302 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 174/294 (59%), Gaps = 10/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPG 79 + G VA+VG N GKSTL+N +G KVSIV+ K TTR V G+ + E+QIVFLDTPG Sbjct: 2 KVGYVAIVGKPNVGKSTLLNNLIGTKVSIVSPKPGTTRIRVLGVKNIPNEAQIVFLDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRLIL 135 I+ +D+ + M+ + ++++ AD++ ++D+ ++ ++ + +K+ AK + L Sbjct: 62 IYRPRDALGEAMVSQAATSLQDADVILFMIDAEDGWRQDDEMVFNTYIKQYAK-DKPVFL 120 Query: 136 ILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++NK+D V P E L EI ++ + +SA KG+ D++L + LP ++ Sbjct: 121 VINKVDKVGPVDELLPFVKEITDQHPEFREVIPISALKGYNLDELLKTIVKYLPEGEPLF 180 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYS-SCVVTEKWEEKKDGSIL-IRQVIYVE 251 + ++DLP AEI REK+ + +H+EIP + VV E + K D ++L I+ I V+ Sbjct: 181 PEEMVTDLPFKLLAAEIIREKVLMKVHQEIPQGVAVVVYEVSDGKHDPNVLVIKGEIIVD 240 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R + K I++GK GQ +K+I A++E+ I + V+L L+V+V+ DW P+ Sbjct: 241 RENYKPIIIGKGGQRLKSIGKMAREELELITGRKVYLELYVRVKPDWRKRPELV 294 >gi|325261977|ref|ZP_08128715.1| GTP-binding protein Era [Clostridium sp. D5] gi|324033431|gb|EGB94708.1| GTP-binding protein Era [Clostridium sp. D5] Length = 299 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 158/283 (55%), Gaps = 1/283 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++N +SG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ +E QIVF+ Sbjct: 1 MKENYKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M+ ++ T+ D+V +V+ + +++++ + + +IL Sbjct: 61 DTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEQHIIEQLGRVKTPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NK D VK E +L + K VSA G D+++ + LP P Y Sbjct: 121 VINKTDMVKKEEVLTFIDAYQKAYDFAAIVPVSARNGDNTDELVKVIMQYLPCGPQFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D P AE+ REK L EIP+ V + + +K + I I ER S Sbjct: 181 DTITDQPERQIVAELIREKALHCLQDEIPHGIAVAIDSMKMEKR-VMHIDATIICERDSH 239 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ EI +L+ V+L L+VKVQK+W Sbjct: 240 KGIIIGKQGSMLKKIGSTARYEIERLLDCKVNLKLWVKVQKNW 282 >gi|166032680|ref|ZP_02235509.1| hypothetical protein DORFOR_02395 [Dorea formicigenerans ATCC 27755] gi|166027037|gb|EDR45794.1| hypothetical protein DORFOR_02395 [Dorea formicigenerans ATCC 27755] Length = 298 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 157/283 (55%), Gaps = 1/283 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++++ +SG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ E QIVF+ Sbjct: 1 MKNDFKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTDEGQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M+ ++ T+ D+V +V+ + + K++ + + +IL Sbjct: 61 DTPGIHKAKNKLGEYMVNVAEKTLNEVDVVLWLVEPTTFIGAGEQHIAKQLQRVKTPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NK+D VK E +L + VSA G D++L + LP P Y Sbjct: 121 VINKVDSVKREEILPAIAAYKDIYDFADIVPVSARSGDNTDELLRVIMKYLPYGPQFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P AE+ REK L EIP+ V ++ + ++ + I I ER S Sbjct: 181 DTVTDQPERQIVAELIREKALHSLQDEIPHGIAVAIDRM-KMQNKVMHIDATIICERDSH 239 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ EI +L+ V+L L+VKV+KDW Sbjct: 240 KGIIIGKQGSMLKKIGSTARYEIERMLDCKVNLKLWVKVKKDW 282 >gi|291458560|ref|ZP_06597950.1| GTP-binding protein Era [Oribacterium sp. oral taxon 078 str. F0262] gi|291419093|gb|EFE92812.1| GTP-binding protein Era [Oribacterium sp. oral taxon 078 str. F0262] Length = 313 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 166/300 (55%), Gaps = 7/300 (2%) Query: 7 TFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 +F K+ + RSG V L G N GKSTL+N +G K++I + + QTTR + G+ Sbjct: 4 SFEEGGKESGMEGIRSGFVGLAGRPNVGKSTLMNAVIGQKIAITSKRPQTTRKRIMGVYD 63 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLL 123 ++ QI+F DTPGI A++ + M ++ + D+V +V+ E + I LL Sbjct: 64 DERGQIIFHDTPGIHKARNRLSEFMEHVAEKALGDVDLVLWLVEPGELPGEAEEYIAGLL 123 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +E K++ IL++NKID +K E L Q E L+ + + +SA K +++ + + Sbjct: 124 RECKKKT---ILVVNKIDILKNEEELTQLTEAYRNLLELTELIPISAYKHKNIEELKSAI 180 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI 242 LP P Y D ++D+P+ AE+ RE+ L +E+P+ V+ E+ ++K+G Sbjct: 181 FRNLPPGPRYYDEDTVTDMPLRDIAAELIREQTLYKLDQEVPHGIAVLIEEMRQRKNGLW 240 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I+ I ER + K I++G+ G +K I A+ ++ ++LE V+L LFVKV+KDW +P Sbjct: 241 DIKASIICEREAHKGIIIGRGGSMLKRIGSGARIQMEKLLEGRVNLQLFVKVRKDWRENP 300 >gi|319939220|ref|ZP_08013583.1| GTP-binding protein Era [Streptococcus anginosus 1_2_62CV] gi|319811616|gb|EFW07892.1| GTP-binding protein Era [Streptococcus anginosus 1_2_62CV] Length = 299 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 165/281 (58%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V S E + D++ E K + ++L++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMV-SADENRGKGDDMIMERLKVAKVPVVLVINK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LL Q + K + ++ +SA +G+ +++ L L + ADQI+ Sbjct: 123 IDKVHPDQLLSQIDDYRKQMDFKEVVPISALQGNNVSHLVDILSENLEEGFQYFPADQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ L +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLLLTREEIPHSVAVVIDSMKRDEETD-KVRIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGSMLKKIGSLARRDIELMLGDKVFLETWVKVKKNW 282 >gi|172056862|ref|YP_001813322.1| GTP-binding protein Era [Exiguobacterium sibiricum 255-15] gi|171989383|gb|ACB60305.1| GTP-binding protein Era [Exiguobacterium sibiricum 255-15] Length = 302 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 159/279 (56%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST +NR +G K++I++ K QTTR+ ++G+ + + Q +F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDVQTIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ + ++ D + +++ +++++ + +IL++NK+ Sbjct: 67 HKPKHKLGDFMMKVATNALREVDAILFMINVTEPKGKGDEFIIEKLKDLDTPIILVMNKV 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P + E + +SA +G+ + +L + LP P Y ADQI+D Sbjct: 127 DLIHPNDIPPIIESYQNELNFAAVVPISALQGNNVEPLLQEISKILPEGPMYYPADQITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P +E+ REK+ E+P+S V ++ + ++DG+++ I I +ER SQK I+ Sbjct: 187 HPERFIISEMIREKVLQKTRDEVPHSIAVAIDQIKTREDGNMVDIHATILIERDSQKGII 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I EA+ +I +L V+L L+VKVQKDW Sbjct: 247 IGKRGALLKEIGSEARTDIEMLLGTKVYLNLWVKVQKDW 285 >gi|297171260|gb|ADI22267.1| GTPase [uncultured Gemmatimonadales bacterium HF0200_36I24] gi|297171355|gb|ADI22359.1| GTPase [uncultured nuHF2 cluster bacterium HF0500_02A10] Length = 300 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 158/289 (54%), Gaps = 13/289 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR+G +AL G N+GKSTL+NR VG K+SIVT K QTT + GI + Q +FLDTPG Sbjct: 6 SRAGYIALAGLPNSGKSTLMNRLVGQKISIVTPKAQTTWQRITGIRTTDNEQGIFLDTPG 65 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL-ILN 138 + AKD K M+ S I AD+V L++D+ D +KE+ SS + +N Sbjct: 66 LLLAKDLLQKGMLEESLEAISEADVVVLILDATNFSSNKDKDQIKEVLSLSSAPVFAAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMV-----SATKGHGCDDVLNYLCSTLPLAPWVY 193 KID P +I + + +IE V SA G +++ L LP +P++Y Sbjct: 126 KIDIANPR------DITDIVGWIESELGVEARGISALMDRGVEELWVDLAKHLPESPFLY 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++ L + F AE RE +F EIPY+ V E + E +D + I+ ++VE+ Sbjct: 180 PPEDVASLSVRFFVAEFVRETIFEQFQDEIPYAVFVSVEDFRENQD-PVYIKANVWVEKK 238 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 SQK+I++G G+ I+ + ++ +I E ++ V+L L+VKV +W P Sbjct: 239 SQKRILVGNQGKAIRELGRLSRGKIEEFIDCSVYLDLWVKVLPNWRKKP 287 >gi|256375392|ref|YP_003099052.1| GTP-binding protein Era [Actinosynnema mirum DSM 43827] gi|255919695|gb|ACU35206.1| GTP-binding protein Era [Actinosynnema mirum DSM 43827] Length = 298 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 161/293 (54%), Gaps = 10/293 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG VG NAGKSTL N VG KV+I + K QTTR +RGIV ++ Q++ +DT Sbjct: 2 DGYRSGFACFVGRPNAGKSTLTNALVGTKVAITSSKPQTTRHTIRGIVHREDGQLILVDT 61 Query: 78 PGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-- 132 PG+ + + ++R +WS + D+V V + +++ + E+AK + R Sbjct: 62 PGLHRPRTLLGQRLNDLVRETWSEV---DVVGFCVPADQKVGPGDKFIAAELAKIAKRTP 118 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +I I+ K D V +++LEQ +++ + VSA G+ D + + L LP P + Sbjct: 119 VIGIVTKTDLVPQQQVLEQLIALQEVMEFAEIIPVSAVDGYQVDTLSDLLLGKLPEGPPL 178 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYV 250 Y +++D P AE+ RE + E+P+S VV E+ E +D + I ++V Sbjct: 179 YPDGELTDEPEQTLVAELIREAALEGVRDELPHSIAVVVEEMLPREGRDDLVDIHANVFV 238 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ERPSQK I+LG G+ +K + + ++ +I ++L V+L L +K+ KDW DPK Sbjct: 239 ERPSQKAIILGHRGERLKQVGITSRHQIEKLLGTRVYLDLHIKIAKDWQRDPK 291 >gi|150026004|ref|YP_001296830.1| GTP-binding protein Era [Flavobacterium psychrophilum JIP02/86] gi|149772545|emb|CAL44028.1| GTP-binding protein Era [Flavobacterium psychrophilum JIP02/86] Length = 293 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 157/279 (56%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG ++SI+T K QTTR + GIV+ ++ Q++ DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + M+ S + AD++ +V+ ++LK +I ++L+LNK Sbjct: 64 IKPAYEMQESMMNFVKSAFEDADVLVYMVEIGEQDLKD--EAFFNKIINAKIPVLLLLNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID +L Q V + F +SA + +V + + LP +P Y DQ++ Sbjct: 122 IDTSNQAQLEAQVAFWTAKVPNAEIFPISALQNFNVPEVFDRIIKLLPESPAYYPKDQLT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F E REK+ +H KEIPY+ +VTE++ E D I IR +I VER +QK I+ Sbjct: 182 DKPERFFVNETIREKILIHYSKEIPYAVEIVTEEFFE-DDNIIRIRSLIMVERETQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G+ +K + +E++ ++ + + +H+ L+VKV K+W Sbjct: 241 IGHKGEALKRVGVESRADLEKFFGKQIHIELYVKVNKNW 279 >gi|261855985|ref|YP_003263268.1| GTP-binding protein Era [Halothiobacillus neapolitanus c2] gi|261836454|gb|ACX96221.1| GTP-binding protein Era [Halothiobacillus neapolitanus c2] Length = 308 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 166/292 (56%), Gaps = 10/292 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R G VA+VG N GKS+L+NR VG K+SI K QTTR + GI+SE Q+VF+DTP Sbjct: 13 NQRFGQVAIVGRPNVGKSSLLNRLVGQKISITAPKPQTTRHRITGILSEPRGQVVFVDTP 72 Query: 79 GIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLIL 135 GI D+ ++ + R + S D+V VV S R E + +L+++ + IL Sbjct: 73 GIHQGGSDALNRQLNRTARSGFDGVDLVLFVVQSGRFNEEDAGVLELIRQSGLPT---IL 129 Query: 136 ILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++NKID ++ + L A++ + F+ + +SA + G +L+ + LP +Y Sbjct: 130 LINKIDLLQDKTALFPFLAQMQTRFDFL-ALYPLSAHRDRGFGGLLDLIFKHLPSGEPMY 188 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D+++ + AEI REK+ LH E+PY + V+ E++ E+ D + I VIYV R Sbjct: 189 DPDEVTTITTRFMAAEIIREKMARLLHDELPYKTTVLIERFSEEPDLT-EIDAVIYVARD 247 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 SQK I++G G+ +K I A+ ++ ++L+ V L L+V+V++DW D + Sbjct: 248 SQKGIVIGSGGKKLKDIGSLARHDLEQMLQTKVMLRLWVRVREDWADDERAV 299 >gi|33593414|ref|NP_881058.1| GTP-binding protein Era [Bordetella pertussis Tohama I] gi|33597818|ref|NP_885461.1| GTP-binding protein Era [Bordetella parapertussis 12822] gi|33602720|ref|NP_890280.1| GTP-binding protein Era [Bordetella bronchiseptica RB50] gi|81836247|sp|Q7VW40|ERA_BORPE RecName: Full=GTPase Era gi|81836545|sp|Q7W5J7|ERA_BORPA RecName: Full=GTPase Era gi|81836774|sp|Q7WD33|ERA_BORBR RecName: Full=GTPase Era gi|33572770|emb|CAE42702.1| GTP-binding protein [Bordetella pertussis Tohama I] gi|33574247|emb|CAE38579.1| GTP-binding protein [Bordetella parapertussis] gi|33577162|emb|CAE35719.1| GTP-binding protein [Bordetella bronchiseptica RB50] gi|332382823|gb|AEE67670.1| GTP-binding protein Era [Bordetella pertussis CS] Length = 296 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 105/285 (36%), Positives = 169/285 (59%), Gaps = 15/285 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL N +G K+SIV+ K QTTR + G+++ + Q VF+DTPG Sbjct: 7 RAGFVAIVGRPNVGKSTLTNALIGTKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPG- 65 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILI 136 F + + +++M R+ + D+V VV++ + E + LL +S R IL+ Sbjct: 66 FQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEGDAKLLPLL----PKSRRSILV 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI---EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++KID +K E +KL+ + + VSATKG D +L+ + + LP ++ Sbjct: 122 VSKIDALKNRD--ELFPFVSKLMALHAYDAVVPVSATKGQQLDQLLDEIAAGLPQGDPMF 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D ++D P+ AE+ REK+F + E+PY VV E+WEE + G + I + VER Sbjct: 180 EEDTLTDRPVRFIAAELVREKIFRLVGDELPYGCTVVIEQWEETERG-VRIAACVVVERE 238 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S + I+LG G ++K I+ EA+++IA++L+ PVHL +++KV+K W Sbjct: 239 SHRPILLGAGGMHMKRIATEARQDIAKLLDMPVHLEIYIKVRKGW 283 >gi|331648312|ref|ZP_08349401.1| GTP-binding protein Era [Escherichia coli M605] gi|330912335|gb|EGH40845.1| GTP-binding protein Era [Escherichia coli AA86] gi|331042861|gb|EGI15002.1| GTP-binding protein Era [Escherichia coli M605] Length = 301 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 164/295 (55%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP AP Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAP 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|329770520|ref|ZP_08261898.1| GTP-binding protein Era [Gemella sanguinis M325] gi|328836269|gb|EGF85938.1| GTP-binding protein Era [Gemella sanguinis M325] Length = 302 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 163/282 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G NAGKSTL+N + K++I++ K QTTR+I+ G+ ++ +SQIVF+DTPGI Sbjct: 7 KTGFVTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDSDSQIVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++L+ S I+ ++IV L++++ + L+ + + L++NKI Sbjct: 67 HKPKHKLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLLINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE+LLE N+L + +SA K D++L+ L + +Y D I+D Sbjct: 127 DLITPEKLLEIITFYNELYDFVEIVPISALKSINVDNLLSTTKKYLQPSFKMYPDDVITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E REK+ +EIP+S VV ++ E+++ I I VER SQK +++ Sbjct: 187 SPEYFVISEFIREKVLQLTDQEIPHSIAVVIDRIEKQEGKKKNIIATIVVERKSQKGMII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 GK G+ IK I A+++I +L + V L L+VKV +W P Sbjct: 247 GKQGKMIKEIGSRARRDIEVLLGEKVFLELWVKVIDNWRSKP 288 >gi|289423889|ref|ZP_06425682.1| GTP-binding protein Era [Peptostreptococcus anaerobius 653-L] gi|289155666|gb|EFD04338.1| GTP-binding protein Era [Peptostreptococcus anaerobius 653-L] Length = 299 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 165/284 (58%), Gaps = 2/284 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N VG K++I++ K QTTR+ ++ + +++E+QIVF+DTPGI Sbjct: 4 KSGFVSIVGRPNVGKSTLMNDMVGEKIAIMSDKPQTTRNTIQAVYTDEEAQIVFMDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ ++M++ + K+ D + VVD R + +++ + K S+ + L++NKI Sbjct: 64 HKPKNKLGEMMVKSASDAFKNVDSIIFVVDDSRTIGKGDSLIIENLKKTSTPVFLVINKI 123 Query: 141 DCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + E L E + + L ++ SA KG D ++ + L P + ++ Sbjct: 124 DKIDNKEDLFEMIRMYDDLNVFKEIIPTSALKGSNIDSLIKVIKRNLNEGPKYFPDYMVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D P +E+ REK+ + + E+P+ + EK +E+K ++ I VIY ER S K I Sbjct: 184 DQPERVLVSELIREKVLHYTNDEVPHGVAIEIEKMKERKGKDLIDISAVIYCERNSHKGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 ++GK G+ +K I A++EI +L V+L ++VKV+++W + P Sbjct: 244 IIGKQGKKLKGIGKSAREEIEFLLGTKVNLQIWVKVKENWRNLP 287 >gi|290580024|ref|YP_003484416.1| GTP-binding protein [Streptococcus mutans NN2025] gi|254996923|dbj|BAH87524.1| GTP-binding protein [Streptococcus mutans NN2025] Length = 299 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 162/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + + + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERLKAAKVPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ +++ L L + ADQI+D Sbjct: 124 DKVHPDQLLEQIDDFRNQMDFQEIVPISALQGNNVSHLVDLLVDHLEEGFQYFPADQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVERPSQKKIM 259 P +E+ REK+ L +EIP+S VV + +++ I IR I VER SQK I+ Sbjct: 184 HPERFLVSEMIREKVLLLTREEIPHSVAVVVDSMARDEETHKIHIRATIMVERDSQKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 244 IGKKGAMLKKIGQMARRDIELMLGDKVYLETWVKVKKNW 282 >gi|256847126|ref|ZP_05552572.1| GTP-binding protein Era [Lactobacillus coleohominis 101-4-CHN] gi|256715790|gb|EEU30765.1| GTP-binding protein Era [Lactobacillus coleohominis 101-4-CHN] Length = 301 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 156/288 (54%), Gaps = 5/288 (1%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E+K+F SG VAL+G N GKSTL+N VG KV+I+++ QTTR+ ++GI + ++ Sbjct: 2 ENKEF-----HSGFVALIGRPNVGKSTLLNYIVGQKVAIMSNVAQTTRNKIQGIYTTDDA 56 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 QIVF+DTPG+ + M R + S + D V VV + + ++ + Sbjct: 57 QIVFIDTPGVHKPRTKLGDFMERSTMSALAEIDAVLYVVAADEKRGPGDDYIINHLKDVK 116 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + L++NKID V P L + + VSA +G+ + ++N L LP+ P Sbjct: 117 QPIYLVVNKIDTVHPNELPTIVGQYKDALPFKDIVPVSALQGNNINTLMNELVQELPVGP 176 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 Y +DQISD P AE+ REK+F +E+P+S + + + + ++ I I V Sbjct: 177 QYYPSDQISDHPERFVIAEMIREKVFQLTREEVPHSVAIDVTSIKREDNETVHINANIIV 236 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ERP QK I++GK GQ +K I A+++I +L V+L L+VKV W Sbjct: 237 ERPGQKGIIIGKKGQMLKKIGQMARRDIEHLLGDHVYLQLWVKVVPGW 284 >gi|110597803|ref|ZP_01386086.1| Small GTP-binding protein domain:GTP-binding protein Era [Chlorobium ferrooxidans DSM 13031] gi|110340528|gb|EAT59011.1| Small GTP-binding protein domain:GTP-binding protein Era [Chlorobium ferrooxidans DSM 13031] Length = 305 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 155/285 (54%), Gaps = 9/285 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G ++G NAGKSTL+N + K+SIVT K QTTR + GI + QI+FLDTPGI Sbjct: 9 GFAIIIGPPNAGKSTLLNELLDYKLSIVTPKPQTTRKKITGIYHNDKCQIIFLDTPGIMK 68 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-----IAKRSSRLILIL 137 + H+ M+ + T+K ADIV ++ + + + +E + ++I +L Sbjct: 69 PQQKLHESMLGIIRETLKDADIVIALLPYSGKKEFFDREFAEELFSSWLKPAGKKIIAVL 128 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D V ER E K VSA KG +++ + LPL +Y D Sbjct: 129 NKSDLVTEERQREAEAFVRKTWNPAAVLSVSALKGSNLPALIDTIQPYLPLNYPLYPEDT 188 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LIRQVIYVERP 253 +S P F +EI REK+FL +E+PYS+ VV +++ E+ + LIR + VER Sbjct: 189 LSTAPERFFVSEIIREKIFLLYGREVPYSTEVVIDEFREQHEDDPKRKDLIRCSVIVERE 248 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +QK+I++G G +K + A+K+I E+L +PV L LF+KV+ DW Sbjct: 249 TQKQILIGSKGAALKKLGQTARKDIEELLGRPVFLELFIKVRPDW 293 >gi|256425495|ref|YP_003126148.1| GTP-binding protein Era [Chitinophaga pinensis DSM 2588] gi|256040403|gb|ACU63947.1| GTP-binding protein Era [Chitinophaga pinensis DSM 2588] Length = 289 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 155/278 (55%), Gaps = 3/278 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V + G NAGKSTL+N VG K++IV+ KVQTTR + G+V+ E QIVF DTPGI Sbjct: 3 KAGFVNIFGKANAGKSTLMNALVGEKLAIVSPKVQTTRHRITGVVTTPEYQIVFSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + H+ M+ S ++ AD+ L++D L+ N+ L K +R IL+LNK Sbjct: 63 IDPRYRLHEKMMGAVKSALEDADVAMLIMDVKDNLEENLS--LFASLKLKARTILVLNKS 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E L + + EK ++SA +G G +L + LP + Y D ++D Sbjct: 121 DLLMKEELDVLVKKCEEWGKAEKVVLISAMQGKGVPALLQTIVGMLPESEPFYPEDTLTD 180 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 F EI REK+F +EIPY + V +++E K+ I I I V R +QK I+L Sbjct: 181 KSTRFFVGEIVREKIFQLFDEEIPYHTAVAVTQFQE-KNTLIKISADIIVTRETQKAIIL 239 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +IK I A+++I + + Q V L LFVKV+ W Sbjct: 240 GDKGSSIKKIGTLARQDIEKFVGQKVFLELFVKVRGKW 277 >gi|241890023|ref|ZP_04777321.1| GTP-binding protein Era [Gemella haemolysans ATCC 10379] gi|241863645|gb|EER68029.1| GTP-binding protein Era [Gemella haemolysans ATCC 10379] Length = 302 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 161/282 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G NAGKSTL+N + K++I++ K QTTR+I+ G+ ++ +SQIVF+DTPGI Sbjct: 7 KTGFVTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDNDSQIVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++L+ S I+ ++IV L++++ + L+ + + L++NKI Sbjct: 67 HKPKHRLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLLINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE+L++ E L + +SA K D++LN L + +Y D I+D Sbjct: 127 DLISPEQLIQIIEFYKDLYDFVEIVPISALKSINVDNLLNTTKKYLQPSFKMYPDDVITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E REK+ +EIP+S VV ++ E++ I I VER SQK +++ Sbjct: 187 SPEYFVISEFIREKVLQLTEQEIPHSIAVVIDRIEKQPGKKKNIIATIVVERKSQKGMII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 GK G+ IK I A+K+I +L + V L L+VKV +W P Sbjct: 247 GKQGKMIKEIGSRARKDIEVLLGEKVFLELWVKVIDNWRSKP 288 >gi|315223060|ref|ZP_07864939.1| GTP-binding protein Era [Streptococcus anginosus F0211] gi|315188010|gb|EFU21746.1| GTP-binding protein Era [Streptococcus anginosus F0211] Length = 299 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 104/281 (37%), Positives = 164/281 (58%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V S E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMV-SADENRGKGDDMIMERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P +LL Q + K + ++ +SA +G+ +++ L L + ADQI+ Sbjct: 123 IDKVHPNQLLSQIDDYRKQMDFKEVVPISALQGNNVSHLVDILSENLEEGFQYFPADQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ L +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLLLTREEIPHSVAVVIDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGSMLKKIGSLARRDIELMLGDKVFLETWVKVKKNW 282 >gi|307266976|ref|ZP_07548493.1| GTP-binding protein Era [Thermoanaerobacter wiegelii Rt8.B1] gi|306918025|gb|EFN48282.1| GTP-binding protein Era [Thermoanaerobacter wiegelii Rt8.B1] Length = 302 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 158/279 (56%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G VALVG TN GKSTL+N + K++I + K QTTR+ + GI++ E Q++F+DTPGI Sbjct: 4 KAGFVALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + MI ++ T+K D++ +++ E+ +++ + + + +IL++NKI Sbjct: 64 HKPKSKLSEFMIEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V +R+ E +I + + +SA + D + + S LP P Y D I+D Sbjct: 124 DLVPEKRVEETIKIFKEQYEFKDVVAISAIENKNIDLLKEKIVSLLPEGPRYYLDDYITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AEI REK+ L +E+P+ V E +E++D I+ I IY E+ S K I+ Sbjct: 184 QPEKLIVAEIIREKMLHFLEEEVPHGVYVEVESIKEREDKDIIDIEAYIYCEKESHKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNGQ +K I A+ ++ E + V L L+VK +K W Sbjct: 244 IGKNGQMLKKIGQSARLDLEEFYGKQVFLDLWVKTRKGW 282 >gi|153810738|ref|ZP_01963406.1| hypothetical protein RUMOBE_01122 [Ruminococcus obeum ATCC 29174] gi|149833134|gb|EDM88216.1| hypothetical protein RUMOBE_01122 [Ruminococcus obeum ATCC 29174] Length = 302 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 160/285 (56%), Gaps = 2/285 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++N +SG A++G N GKSTL+N +G K++I + K QTTR+ ++ + + ++ QIVFL Sbjct: 1 MKENFKSGFTAIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCEDGQIVFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M++++ T+K D++ +V+ + + +++ +IL Sbjct: 61 DTPGIHKAKNKLGEYMVQVAERTLKDVDVILWLVEPTTFIGAGERHIAEQLKGLHLPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NK+D V + +L+ + KL ++ SA + +D++ + LP P Y Sbjct: 121 VINKVDTVDKDEILKAIDTYRKLYDFDEIIPCSALRNQNTEDIIPCILKYLPYGPMFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK--KDGSILIRQVIYVERP 253 D ++D P AEI REK L EIP+ V + +E+ K + I I ER Sbjct: 181 DTVTDQPQRQIAAEIIREKALHALDAEIPHGIAVAIDTMKERPGKRQLVDIEATIICERD 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GK G +K I A+ E+ ++L+ V+L L+VKV+KDW Sbjct: 241 SHKGIIIGKQGAMLKKIGSNARYELEQMLDAKVNLKLWVKVRKDW 285 >gi|224030001|gb|ACN34076.1| unknown [Zea mays] Length = 439 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 103/291 (35%), Positives = 163/291 (56%), Gaps = 11/291 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ S V +VGA NAGKS+L N VG KV+ V+ K TT + G++++ +QI F D Sbjct: 145 EEDQMSLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGNTQICFFD 204 Query: 77 TPGIFNAKDS--YHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS- 131 TPG+ Y + +R+ +WS+I D++ ++ D +R L + ++K I + + Sbjct: 205 TPGLMLGHHGFPYRDVTVRVESAWSSINLYDLLIVMFDVNRHLNLPDSRVIKLIKRLGTE 264 Query: 132 -----RLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 R IL +NK+D V+ ++ LL+ A+ L E+ FMVS KG G D++ YL Sbjct: 265 VNPNQRRILCMNKVDLVEDKKDLLKVAKEFEDLPGYERYFMVSGLKGKGVKDLVQYLMEQ 324 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW +++ M T E+ REK+ H+H+EIPY W+E KDGS+ + Sbjct: 325 AVRRPWDEEPTVMTEEVMKTITLEVVREKMLHHIHQEIPYVIEHRLMGWKELKDGSLRVE 384 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 Q + SQ++I++GKNG I I +EA +E+ I ++ VHLIL V+V K Sbjct: 385 QHFIAPKQSQRQILVGKNGSKIGRIGIEANEELRSIFKRDVHLILQVRVAK 435 >gi|110004378|emb|CAK98716.1| probable gtp-binding protein era [Spiroplasma citri] Length = 294 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 104/282 (36%), Positives = 159/282 (56%), Gaps = 1/282 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N + KV+IVT K QTTR+ ++GI +++ESQIVF+DTPGI Sbjct: 4 KSGFVAIVGRPNVGKSTLLNTILNNKVAIVTAKAQTTRNRIQGIYNDQESQIVFMDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A + K M +++ S K AD++ + ++ + N ++K + +R+ ++L++ KI Sbjct: 64 HKAHNEMGKFMNKVALSATKAADVILFLAPANERIGDNDRYIIKALQERAIPIVLVVTKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V L+ + K+ VSA K + +L L + L + P Y D ++D Sbjct: 124 DLVSKGDLMVKIAEWEKIHQFTAVIPVSAVKHKNLETLLILLKTHLEVGPQYYPDDMLTD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P EI REK+ L EIP+S + +K E++ + I I VER SQK I++ Sbjct: 184 QPEKFLICEIIREKILLLTEDEIPHSVAIQIDKIEDQPQ-LLKIMASICVERDSQKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 GK G+ IK I +A+ E+ +IL + L LFVKV W P Sbjct: 243 GKQGRLIKKIGTQARLELEQILGTKIFLELFVKVVDKWRDKP 284 >gi|282882517|ref|ZP_06291138.1| GTP-binding protein Era [Peptoniphilus lacrimalis 315-B] gi|281297659|gb|EFA90134.1| GTP-binding protein Era [Peptoniphilus lacrimalis 315-B] Length = 297 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 158/280 (56%), Gaps = 2/280 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKST++N +G K+S +++K QTTR + I ++K+ QIVFLDTPGI Sbjct: 5 KSGYVSIVGRANVGKSTMLNSLIGQKISAISNKAQTTREKISFIYTDKDCQIVFLDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSRLILILNK 139 K+ M+ S S++ ADI+ +VD+ +++ K++ + + ++IL++NK Sbjct: 65 QKPKNKLGNFMLNESLSSLSEADIITYIVDTSKKIGKLDSSIIDTLKKLKDKKIILLINK 124 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + E L E +K+ +SA K G D+ + + L P Y D ++ Sbjct: 125 IDLIAKEELFPIIEAYDKIGIFSHIIPISAMKNDGVDEYIEVIKENLSPGPMFYPEDYVT 184 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D EI REK L +E+P+ V EK++ + D I I VIYVER S K I Sbjct: 185 DKSEKFLAEEIIREKGLRFLQEEVPHGLAVGIEKFKMRSDKEIYDIDAVIYVERDSHKAI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A++E+ +L+ V+L L+VKV K+W Sbjct: 245 VIGKGGSMLKKIGTSARRELENMLDSKVNLKLWVKVSKNW 284 >gi|255101596|ref|ZP_05330573.1| GTP-binding protein Era [Clostridium difficile QCD-63q42] Length = 297 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 168/280 (60%), Gaps = 2/280 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N VG K++I++ K QTTR+ ++ + +++E QIVFLDTPGI Sbjct: 3 KSGFVSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ + M++ + K+ D++ VVD +++ +++++ + +IL++NKI Sbjct: 63 HKPKNKLGEFMVKAATEAFKNVDLILFVVDDSKKIGPGDRKIIEDLRSVKTPIILVVNKI 122 Query: 141 DCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + + + L + ++ ++ ++ +SA KG D ++ + + L P + I+ Sbjct: 123 DQLDQKDELFDIIKMYDREGIFKEIVPISALKGKNTDTLIKVIQNYLEEGPKYFPDYMIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D P AE+ REK+ +L+ EIP+ V EK + + D I+ + VIY E+ S K I Sbjct: 183 DQPERVLIAELIREKVLHYLNDEIPHGVAVEIEKMKARNDKEIVDVSAVIYCEKDSHKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GKNG+ +K I A+++I +L ++L L+VKV+++W Sbjct: 243 IIGKNGRKLKGIGKSARQDIELLLGSQINLQLWVKVKENW 282 >gi|325285624|ref|YP_004261414.1| GTP-binding protein Era-like-protein [Cellulophaga lytica DSM 7489] gi|324321078|gb|ADY28543.1| GTP-binding protein Era-like-protein [Cellulophaga lytica DSM 7489] Length = 294 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 155/278 (55%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIV+ + Q++ DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGDDFQVILSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 M+ + + ADI+ +V+ E + ++ ++L+LNKI Sbjct: 64 IKPAYELQSSMMDFVKTAFEDADILIYMVEIG-EKALKDEAFFNKLKNSKIPVLLLLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E+L EQ + + + + +SA +V + LPL+P Y DQ++D Sbjct: 123 DASEQEKLEEQVQYWQEQLPTAEIHPISALMNFNVKEVFLRIIELLPLSPAYYPKDQLTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F E REK+ KE+PY+ + TE++ E +D I +R VI VER SQK I++ Sbjct: 183 KPERFFVNETIREKILQFYKKEVPYAVEIDTEEFFEDED-IIRMRAVIMVERDSQKGIII 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K + +EA+K++ + ++ VHL L+VKV K+W Sbjct: 242 GHKGSALKRVGVEARKDLEKFFDKQVHLELYVKVNKNW 279 >gi|210623874|ref|ZP_03294109.1| hypothetical protein CLOHIR_02060 [Clostridium hiranonis DSM 13275] gi|210153300|gb|EEA84306.1| hypothetical protein CLOHIR_02060 [Clostridium hiranonis DSM 13275] Length = 299 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 166/280 (59%), Gaps = 2/280 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N VG K++I++ K QTTR+ ++ + ++ ESQ+VFLDTPGI Sbjct: 3 KSGFVSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDDESQVVFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ ++M++ + + D++ VVDS R++ +++++ + ++L++NKI Sbjct: 63 HKPKNKLGEIMVKAATDAFSNVDLILFVVDSSRKIGPGDRRIMEDLRGSKTPIVLVINKI 122 Query: 141 DCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D ++ + L + ++ + ++ +SA KG ++N + L P + ++ Sbjct: 123 DQIEDKDELFDIIKMYDDEKMFKEIVPISALKGKNVKTLINVIKEDLEEGPKYFPDYMVT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D P AE+ REK+ ++ E+P+ V E+ + +KD I+ I VIY ER S K I Sbjct: 183 DQPERVLIAELIREKVLHYVDDEVPHGVAVEIERMKARKDKEIIDISAVIYCERDSHKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G+ +K I A+++I +L ++L L+VKV+++W Sbjct: 243 IIGKGGRKLKGIGKSARQDIELLLGSQINLQLWVKVKENW 282 >gi|255533658|ref|YP_003094030.1| GTP-binding protein Era [Pedobacter heparinus DSM 2366] gi|255346642|gb|ACU05968.1| GTP-binding protein Era [Pedobacter heparinus DSM 2366] Length = 295 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 158/281 (56%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V+++G N GKSTL+N VG K+SI+T K QTTR + GIV+E+ QIVF DTPGI Sbjct: 4 KAGFVSIIGKPNVGKSTLMNALVGEKLSIITPKAQTTRHRILGIVNEESYQIVFSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 M+ + AD++ V D + + N D+L++I L+++LNKI Sbjct: 64 IKPLYGLQDSMMNSVKGALTDADLILFVTDINEQHDEN--DVLEKITNTEIPLVVLLNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E+ + + + F +SA + + +++ + LP Y + ++D Sbjct: 122 DNATQEQVDEKVAYWQEKLNPKHIFAISALHQYNLEGIMSMVLDYLPEHAPFYDKEDLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS---ILIRQVIYVERPSQKK 257 F +EI REK+F + KEIPYS+ V+ ++E++ S + I I VER SQK Sbjct: 182 RSQRFFVSEIIREKIFFNYKKEIPYSTEVIVTAFKEEQSKSGPMVRITAEIVVERDSQKN 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++G G +K + +E++K+I + L+Q V L FVKV DW Sbjct: 242 ILIGTGGAMLKKVGMESRKDIEKFLDQKVFLETFVKVIPDW 282 >gi|168335124|ref|ZP_02693232.1| GTP-binding protein Era [Epulopiscium sp. 'N.t. morphotype B'] Length = 303 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 158/279 (56%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKSTL+NR VG K++I+++K QTTR VR I++ + Q VF+DTPGI Sbjct: 6 KSGFISIIGRANVGKSTLMNRLVGEKIAIMSNKPQTTRHQVRTILTTNDFQAVFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++ + +T+ DI+ ++++ + +++ ++ +S + L +NKI Sbjct: 66 HTPNTELGKFMVKAAHTTLNEVDIILFLIETDTRIGKLDEEIISKLKSVNSAVFLCINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D P+ +++ E + + +SA +G D +++ + LP P + D I+D Sbjct: 126 DGKDPQEVIDSIECYKDSMDFAEVIPISAYEGTNVDALIHCISKYLPAGPKFFPEDMITD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 P AE+ REK L KEIP+ + ++ + K + I I ER + KKI+ Sbjct: 186 EPERQLVAELIREKALHLLDKEIPHGIAIEISSMRKRDKSDMVDIEATIICERDAHKKII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNGQ IK+I A+++I +L + L L+VKV+K+W Sbjct: 246 IGKNGQMIKSIGTHARRDIERLLGSKIFLSLWVKVKKNW 284 >gi|55820698|ref|YP_139140.1| GTP-binding protein Era [Streptococcus thermophilus LMG 18311] gi|55736683|gb|AAV60325.1| GTP-binding protein [Streptococcus thermophilus LMG 18311] Length = 299 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 167/281 (59%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K++ +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EPRGKGDDMIIERLKQAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LLEQ + K + ++ +SA +G+ +++ L L + +DQI+ Sbjct: 123 IDKVHPDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D ++ IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLQLTREEIPHSVAVVIDSMKRDEETD-TVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+K+I +L V L +VKV+K+W Sbjct: 242 IVIGKKGAMLKKIGTLARKDIELMLGDKVFLETWVKVKKNW 282 >gi|102139740|gb|ABF69947.1| GTPase family protein [Musa acuminata] Length = 305 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 160/284 (56%), Gaps = 5/284 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G VA++G N GKSTL N+ +G K+SIVT K QTTR + GI S E Q++ DTPG+ Sbjct: 7 AGYVAVLGRPNVGKSTLSNQMIGQKLSIVTEKPQTTRHRILGICSGPEYQMILYDTPGVI 66 Query: 82 NAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE---IAKRSSRLILIL 137 K +M++ S +AD V +VVD+ + + I D+L+E + + ++L+L Sbjct: 67 EKKMHMLDSMMMKNVRSAAINADCVLVVVDACK-VPHKIDDVLEEGIGTLRDNLPILLVL 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D +KP + ++ E K ++ VSA G G DDV +++ S LP P Y D Sbjct: 126 NKKDLIKPGEIAKRLEWYQKFTNVDDVIPVSAKFGQGVDDVKDWILSKLPFGPAYYPKDI 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 S+ P F AEI REK+F E+PY+ V + + I+ I VE+ SQK Sbjct: 186 ASEHPERFFVAEIVREKIFTQYRNEVPYACQVNVLNYISRPTSKDFIQVEIVVEKESQKI 245 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK G+ +K ++ A+ +I + L++ V L + VKV+++W D Sbjct: 246 ILIGKGGKALKVLATAARLDIEDFLQKKVFLEVEVKVKENWRQD 289 >gi|159899753|ref|YP_001546000.1| GTP-binding protein Era [Herpetosiphon aurantiacus ATCC 23779] gi|159892792|gb|ABX05872.1| GTP-binding protein Era [Herpetosiphon aurantiacus ATCC 23779] Length = 489 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 167/286 (58%), Gaps = 13/286 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VALVG N GKSTL+N ++G KVSIV+ K QTTR VRGI++ ++QI+F+DTPGI Sbjct: 197 SGFVALVGKPNVGKSTLLNAYLGQKVSIVSPKPQTTRVPVRGILNGPDAQIIFVDTPGIH 256 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRL--ILIL 137 + M+ ++ + +AD++C +VD + V + + +EIA+ SR IL+L Sbjct: 257 KPRHKLGNFMVDVAKRAVPNADVICFMVD----ITVPPNRMDREIAQMVLLSRKPHILVL 312 Query: 138 NKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D + ++ L++ L E VSA G + +L + LP+ +Y D Sbjct: 313 NKVDATDEADKHLQE---YRDLAPWEMEVAVSARDKLGMETLLAEIVQRLPVGHRLYPED 369 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q+SD+ AE+ REK+ L+ +EIP+S V E+WE++ + IR I VE+ SQK Sbjct: 370 QLSDVSERSLVAEMIREKVMLNTEEEIPHSIAVEVEEWEDRGK-VVYIRANISVEKDSQK 428 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I++G G ++ I ++ EI L + ++L L++KV+++W P Sbjct: 429 GIIIGAGGSMLRKIGATSRFEIERSLGRQIYLDLWIKVRENWRQKP 474 >gi|329766983|ref|ZP_08258511.1| GTP-binding protein Era [Gemella haemolysans M341] gi|328837708|gb|EGF87333.1| GTP-binding protein Era [Gemella haemolysans M341] Length = 302 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 161/282 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G NAGKSTL+N + K++I++ K QTTR+I+ G+ ++ +SQIVF+DTPGI Sbjct: 7 KTGFVTIIGRPNAGKSTLLNNILQQKIAIMSDKPQTTRNIINGVYTDNDSQIVFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++L+ S I+ ++IV L++++ + L+ + + L++NKI Sbjct: 67 HKPKHRLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLLINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + PE+L++ E L + +SA K D++LN L + +Y D I+D Sbjct: 127 DLISPEQLIQIIEFYKDLYDFVEIVPISALKSINVDNLLNTTKKYLQPSFKMYPDDVITD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P + +E REK+ +EIP+S VV ++ E++ I I VER SQK +++ Sbjct: 187 SPEYFVISEFIREKVLQLTEQEIPHSIAVVIDRIEKQPGKKKNIIATIVVERKSQKGMII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 GK G+ IK I A+K+I +L + + L L+VKV +W P Sbjct: 247 GKQGKMIKEIGSRARKDIEVLLGEKIFLELWVKVIDNWRSKP 288 >gi|312863009|ref|ZP_07723247.1| ribosome biogenesis GTPase Era [Streptococcus vestibularis F0396] gi|322517151|ref|ZP_08070035.1| GTP-binding protein Era [Streptococcus vestibularis ATCC 49124] gi|311100545|gb|EFQ58750.1| ribosome biogenesis GTPase Era [Streptococcus vestibularis F0396] gi|322124301|gb|EFX95812.1| GTP-binding protein Era [Streptococcus vestibularis ATCC 49124] Length = 299 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 167/281 (59%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + ++ QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K++ +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EPRGKGDDMIIERLKQAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LLEQ + K + ++ +SA +G+ +++ L L + +DQI+ Sbjct: 123 IDKVHPDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLQLTREEIPHSVAVVIDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+K+I +L V L +VKV+K+W Sbjct: 242 IVIGKKGAMLKKIGTLARKDIELMLGDKVFLETWVKVKKNW 282 >gi|262196910|ref|YP_003268119.1| GTP-binding protein Era [Haliangium ochraceum DSM 14365] gi|262080257|gb|ACY16226.1| GTP-binding protein Era [Haliangium ochraceum DSM 14365] Length = 340 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 99/308 (32%), Positives = 163/308 (52%), Gaps = 20/308 (6%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV--------- 61 + D + R+G A++G NAGKSTL+N+ + ++ V+ K QTTR+ + Sbjct: 20 DPADDANEQVRTGFCAILGLPNAGKSTLLNQVLNLRLVAVSPKPQTTRNRILGVHGVTLP 79 Query: 62 -RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD--------SH 112 RG E+ QI+F+DTPGI + + M + AD+ L++D Sbjct: 80 ERGDNPEQPVQIIFVDTPGIQQGPGALRRYMRDQALGAAGDADVALLMIDLADPAQRDPA 139 Query: 113 RELKVNIHDLLKEIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATK 171 R +I LL + + ++L LNK+D V+ + LL E ++ +SA Sbjct: 140 RFEDRDIAALLATLRAGKAPVVLALNKVDTVRSKDALLPILEAYGATGIADEVVPMSAKT 199 Query: 172 GHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVT 231 G G +++ + LP+ P ++ D ++D AE+ RE+LF L +E+PY++ V+ Sbjct: 200 GDGVGRLVDAVGRRLPMGPRLFPEDMVTDRAERFLAAELIREQLFHQLGQELPYATAVIV 259 Query: 232 EKWEEKKD-GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLIL 290 E +EE+ G ++I VIYVER SQK I++GK G+ IK + A++ I+++L P H+ L Sbjct: 260 ESFEERAGRGDVVIGAVIYVERDSQKGIVVGKGGRRIKAVGQHAREAISQLLGCPAHVKL 319 Query: 291 FVKVQKDW 298 FVKV +W Sbjct: 320 FVKVASNW 327 >gi|189345893|ref|YP_001942422.1| GTP-binding protein Era [Chlorobium limicola DSM 245] gi|189340040|gb|ACD89443.1| GTP-binding protein Era [Chlorobium limicola DSM 245] Length = 305 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 159/286 (55%), Gaps = 11/286 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G + G NAGKSTL+N+ + K+SIVT K QTTR + GI + QI+FLDTPGI Sbjct: 9 GFAVIAGQPNAGKSTLLNKLLDYKLSIVTPKPQTTRKKITGIYHDNRRQIIFLDTPGIMQ 68 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-----IAKRSSRLILIL 137 + H+ M+ ++ T++ AD+V ++ + + D E + +I +L Sbjct: 69 PQQKLHESMLAITRRTLEEADVVTALIPYTKGSEPYDLDFTAELFNAWLKPAGKPVIAVL 128 Query: 138 NKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D V + E+AE + +L VSA +G G + ++ L LP+ +Y D Sbjct: 129 NKSDIVS-RAVQEKAESVMTQLFSPAAVISVSALEGTGLEKLVEALTPFLPMDEPLYPED 187 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LIRQVIYVER 252 +S P F +EI REK+FL KE+PY++ VV ++++E+ + LIR + VER Sbjct: 188 MLSTAPERFFVSEIIREKIFLLYGKEVPYAAEVVVDEFKEQYENDPSRKDLIRCSVIVER 247 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +QK+I++G G +K + A+ +I E+L +PV L LF+KV+ DW Sbjct: 248 DTQKQILIGSQGNALKKLGKAARADIEEMLGRPVFLELFIKVRPDW 293 >gi|163754016|ref|ZP_02161139.1| putative GTP-binding protein [Kordia algicida OT-1] gi|161326230|gb|EDP97556.1| putative GTP-binding protein [Kordia algicida OT-1] Length = 294 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 164/284 (57%), Gaps = 4/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIV+ ++ Q++ DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ S + AD++ +V+ + LK K+I +IL+LNK Sbjct: 64 IKPAYELQSSMMDFVKSAFEDADVLIYMVEIGEKSLKD--EAFFKKIINSKIPVILLLNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID E+L EQ E+ + V + + +SA + V + + LP +P Y DQ++ Sbjct: 122 IDKSSQEQLEEQMELWKEKVPTAEIYPISALENFNVPQVFSRIIELLPESPAFYPKDQLT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F E REK+ ++ KEIPY+ V TE++ E+++ I IR VI VER +QK I+ Sbjct: 182 DKPERFFVNETIREKILMNYKKEIPYAVEVETEEFFEEEN-IIRIRSVIMVERETQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G G +KT+ ++A+K++ + + +H+ L+VKV K+W + K Sbjct: 241 IGHKGNALKTVGIQARKDLEKFFGKQIHIELYVKVNKNWRSNAK 284 >gi|301058126|ref|ZP_07199178.1| GTP-binding protein Era [delta proteobacterium NaphS2] gi|300447758|gb|EFK11471.1| GTP-binding protein Era [delta proteobacterium NaphS2] Length = 294 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 159/286 (55%), Gaps = 3/286 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + +VG N GKSTL+NR +G K++IV+ K QTTR+ + G+ + + Q+VF+DTPGI Sbjct: 4 KSGFIGIVGPPNVGKSTLLNRIMGTKLAIVSPKPQTTRNRILGVFHQHDCQMVFMDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + HK M+ +++ D++ ++V++ + +++ + + L +NKI Sbjct: 64 HRTRTALHKSMVDAAFAAFHEVDMILMMVEADPRENPAVPSIIRGLKSIAKPRFLAINKI 123 Query: 141 DCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D VK E +L A+ KL F + +SA KG+G D +L L L P + D + Sbjct: 124 DRVKKEHILPLLADYGRKLDF-DAIIPISALKGNGVDTLLQELKRRLKPGPQFFPEDMDT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-KKDGSILIRQVIYVERPSQKKI 258 D AEI REK++ L +E+PYS V K E+ K + I I+VE SQK I Sbjct: 183 DQSEAFMVAEIIREKIYEQLSQELPYSCAVTVIKIEDVAKKNLVSIGARIHVESDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +G+ G+ I+ I A+ E+ + E V+L L V+++K+W D + Sbjct: 243 FIGRGGRMIRKIGRAARLELESLFEARVYLDLMVRLEKNWSRDTRA 288 >gi|322372543|ref|ZP_08047079.1| GTP-binding protein Era [Streptococcus sp. C150] gi|321277585|gb|EFX54654.1| GTP-binding protein Era [Streptococcus sp. C150] Length = 299 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 166/281 (59%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K++ +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EPRGKGDDMIIERLKQAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LLEQ + + ++ +SA +G+ +++ L L + +DQI+ Sbjct: 123 IDKVHPDQLLEQIDDFRTQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ L +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLLLTREEIPHSVAVVIDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+K+I +L V L +VKV+K+W Sbjct: 242 IVIGKKGAMLKKIGTLARKDIELMLGDKVFLETWVKVKKNW 282 >gi|330469592|ref|YP_004407335.1| GTPase Era [Verrucosispora maris AB-18-032] gi|328812563|gb|AEB46735.1| GTPase Era [Verrucosispora maris AB-18-032] Length = 299 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 157/287 (54%), Gaps = 9/287 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG K++I ++K QTTR I+R ++ +SQ+V +DTPG+ Sbjct: 11 RAGFACFVGRPNAGKSTLTNAIVGQKIAITSNKPQTTRHIIRAVLHRPDSQLVLVDTPGL 70 Query: 81 FNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++R +WS + D++ L + + + + E+A+ + ++ ++ Sbjct: 71 HRPRTLLGERLNDLVRQTWSEV---DVIGLCIPADEPIGRGDRFITGELAELKATVLAVV 127 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V +RL EQ ++L + VSA GH D ++ + LP +P +Y D Sbjct: 128 TKTDLVDKKRLAEQLLAVSELGEFAEVVPVSAVAGHQVDTLVEVMTRYLPESPQLYPDDM 187 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D P AE+ RE + E+P+S VV E E +G + I +YVERPSQK Sbjct: 188 LTDDPEQVLVAELVREAALEGVRDELPHSIAVVVE--EMIPEGQLTKIYADLYVERPSQK 245 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++G G +K + A+++I E+L V+L L V+V KDW DPK Sbjct: 246 AIVIGHRGSRLKAVGTAARRQIEELLGTRVYLDLHVRVAKDWQRDPK 292 >gi|113955090|ref|YP_729987.1| GTP-binding protein Era [Synechococcus sp. CC9311] gi|113882441|gb|ABI47399.1| GTP-binding protein Era [Synechococcus sp. CC9311] Length = 317 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 166/299 (55%), Gaps = 12/299 (4%) Query: 15 FVQDNS---RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 F D S RSG VAL+G N GKSTLVN+ +G K++I + QTTR+ +R I++ E+Q Sbjct: 9 FTSDKSKEFRSGFVALIGRPNVGKSTLVNQLIGDKIAITSPVAQTTRNRLRAILTTDEAQ 68 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 ++ +DTPGI + ++R + S I D V L+++ +++ + ++S Sbjct: 69 LILVDTPGIHKPHHLLGERLVRTARSAIGEVDQVLLLLEGCEAPGRGDAFIVQLLRQQSL 128 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPL 188 + ++LNK D V P + A+ A + + E + V SA G GC +++ + S +P Sbjct: 129 PVQVLLNKWDLV-PLEQKDAADAAYRELLSETDWPVHRCSALSGDGCPELVKAISSLMPE 187 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-----KKDGSIL 243 P +Y +D +SD P E+ RE++ L+ +E+P+S V ++ EE K +G Sbjct: 188 GPQLYPSDMVSDQPERLLMGELIREQVLLNTREEVPHSVAVSIDRIEEIPAKGKGNGRTA 247 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 + + VER SQK I++GK G +KTI A+ ++ +++ PV+L LFVKV DW P Sbjct: 248 VLATVLVERKSQKGILIGKGGAMLKTIGQGARLQMQTLIDGPVYLELFVKVVPDWRSKP 306 >gi|153815591|ref|ZP_01968259.1| hypothetical protein RUMTOR_01827 [Ruminococcus torques ATCC 27756] gi|145847022|gb|EDK23940.1| hypothetical protein RUMTOR_01827 [Ruminococcus torques ATCC 27756] Length = 298 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 162/283 (57%), Gaps = 1/283 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++++ +SG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ +E QIVF+ Sbjct: 1 MREDFKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M+ ++ ++ D+V +V+ + +++++ K + +IL Sbjct: 61 DTPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID VK E +L + K + VSA G D+++ + LP P Y Sbjct: 121 VINKIDMVKKEEILTFIDAYRKEYDFAEIVPVSARSGDNTDELIKVILKYLPYGPQFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P AE+ REK L++EIP+ V ++ + ++ + I I ER S Sbjct: 181 DTVTDQPERQIVAELIREKALHCLNEEIPHGIAVAIDRMKAERR-VMHIDATIICERDSH 239 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ EI +L V+L L+VKVQK+W Sbjct: 240 KGIIIGKQGSMLKKIGSTARYEIERMLGCKVNLKLWVKVQKNW 282 >gi|255320779|ref|ZP_05361954.1| GTP-binding protein Era [Acinetobacter radioresistens SK82] gi|262379445|ref|ZP_06072601.1| GTP-binding protein Era [Acinetobacter radioresistens SH164] gi|255302156|gb|EET81398.1| GTP-binding protein Era [Acinetobacter radioresistens SK82] gi|262298902|gb|EEY86815.1| GTP-binding protein Era [Acinetobacter radioresistens SH164] Length = 342 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 103/311 (33%), Positives = 173/311 (55%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSSQGVTIPADFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++SQ V++DTPG+ + + +K+M R + S ++ ++V VVD+H+ + N +L+++ Sbjct: 85 EKSQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVVDAHKWTQ-NDDLVLEKL 143 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NKID ++ +R LL + KL+ + VSA +G + + + + Sbjct: 144 KNAEMPVILVINKIDTIEEKRTLLPLIQERTKLMNFVEIVPVSALRGANLEHLRDTIDKY 203 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +E+ REK+ L +E+PY V + EK Sbjct: 204 LPFQPPLYSFDQITDRSERFLASEVIREKIMRQLGEELPYDLTVQIESFKTEEPALNEKT 263 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+RP QK I++G+ G +K I ++A+ ++ ++ EQ + L L+VKV Sbjct: 264 GRMKAACTYIDATIFVDRPGQKAIVIGEKGAKLKKIGMDARIDMEKMFEQKIMLTLWVKV 323 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 324 KGGWSDDERAL 334 >gi|24379997|ref|NP_721952.1| GTP-binding protein Era [Streptococcus mutans UA159] gi|26006953|sp|P37214|ERA_STRMU RecName: Full=GTPase Era; AltName: Full=SGP gi|24377985|gb|AAN59258.1|AE014993_2 GTP-binding protein; Era-like protein [Streptococcus mutans UA159] Length = 299 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 161/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + + + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERLKAAKVPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P +LLEQ + + ++ +SA +G+ +++ L L + ADQI+D Sbjct: 124 DKVHPNQLLEQIDDFRNQMDFQEIVPISALQGNNVSHLVDLLVDHLEEGFQYFPADQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVERPSQKKIM 259 P +E+ REK+ L +EIP+S VV + +++ I IR I VER SQK I+ Sbjct: 184 HPERFLVSEMIREKVLLLTREEIPHSVAVVIDSMARDEETHKIHIRATIMVERDSQKGII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 244 IGKKGAMLKKIGQMARRDIELMLGDKVYLETWVKVKKNW 282 >gi|157144498|ref|YP_001451817.1| GTP-binding protein Era [Citrobacter koseri ATCC BAA-895] gi|189037259|sp|A8AD18|ERA_CITK8 RecName: Full=GTPase Era gi|157081703|gb|ABV11381.1| hypothetical protein CKO_00216 [Citrobacter koseri ATCC BAA-895] Length = 301 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 164/296 (55%), Gaps = 13/296 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVIL 121 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLA 189 +NK+D V+ E+A++ L F+ + F+ VSA G D + + LP A Sbjct: 122 AVNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPVSAETGMNVDTIAGIVRKHLPEA 176 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 + D I+D +EI REKL L E+PYS V E++ + G I +I Sbjct: 177 THHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLIL 236 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 237 VEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|254448866|ref|ZP_05062322.1| GTP-binding protein Era [gamma proteobacterium HTCC5015] gi|198261556|gb|EDY85845.1| GTP-binding protein Era [gamma proteobacterium HTCC5015] Length = 292 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 102/281 (36%), Positives = 161/281 (57%), Gaps = 4/281 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKD 85 +VG N GKSTL+NR +G ++SI THK QTTR V G+V+ +Q+VF+DTPG K Sbjct: 1 MVGRPNVGKSTLMNRLIGVRLSIATHKPQTTRHQVLGVVTRDHTQMVFVDTPGYHLGEKR 60 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 + ++ M R + ++ D+V VV + R LL I K +I ++NK+D + Sbjct: 61 AINRYMNRAALGSLNDVDVVVFVVQAMR-FSDEDKALLNRIKKTDLPVIAVVNKVDVLDD 119 Query: 146 E-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 + LL ++ N+ +SA KG G D + L LP P ++ D +D M Sbjct: 120 KNELLPFMQMLNEQHDFVSMLPISARKGQGVDALEGELTPHLPEQPHIFEEDDFTDRNMR 179 Query: 205 HFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNG 264 AE RE+LFL++ +EIPY++ V E+++E+ + +I VI+VER SQK +++GK G Sbjct: 180 FLAAERIREQLFLNMQQEIPYATTVEIEQFKEEAE-RFVIHAVIWVERASQKGMVIGKGG 238 Query: 265 QNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 Q +K + A++ IA +L+ VHL L+V+V++ W D + Sbjct: 239 QRLKEVGTRARQSIARLLDTRVHLELWVRVKEGWSDDERSL 279 >gi|158320287|ref|YP_001512794.1| GTP-binding protein Era [Alkaliphilus oremlandii OhILAs] gi|189037250|sp|A8MG70|ERA_ALKOO RecName: Full=GTPase Era gi|158140486|gb|ABW18798.1| GTP-binding protein Era [Alkaliphilus oremlandii OhILAs] Length = 295 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 158/280 (56%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N+ +G K++I++ K QTTR+ ++ + ++K+ QIVFLDTPGI Sbjct: 4 KSGFVTIIGRPNVGKSTLMNKIIGEKIAIMSDKPQTTRNKIQCVYTQKDYQIVFLDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++++ T+K D V VVD + ++ ++ + +IL+LNKI Sbjct: 64 HKPKHKLGQYMVKIATETLKEVDAVLFVVDEGNSIGPGDQYIIDQLQGIDTPIILVLNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E L + K + +SA +G +++N + LP P + I+D Sbjct: 124 DKMNAENLNHLYDQYEKTGIFKHIIGISALEGANVGNLINLIVQYLPEGPKYFPEHMITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P AE+ REK+ + +EIP+ V T K E KD I I IY E+ S K I Sbjct: 184 QPERLIVAELIREKILHYTDQEIPHGVAVETSLMKRREGKD-IIDINATIYCEKKSHKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G+ +K I A+++I ++L V+L L+VKV++DW Sbjct: 243 IIGKGGRKLKGIGKSAREDIEKLLGSKVYLELWVKVKEDW 282 >gi|225423607|ref|XP_002274221.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 423 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 159/290 (54%), Gaps = 11/290 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ RS V ++GA NAGKS+L N VG KV+ V+ K TT V G++++ +QI F D Sbjct: 134 EEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRKTNTTTHEVLGVMTKGNTQICFFD 193 Query: 77 TPGIFNAKDSY----HKLMIRLSWSTIKHADIVCLVVDSHRELK------VNIHDLLKEI 126 TPG+ Y + + +WS++ D++ ++ D HR L V + + + Sbjct: 194 TPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIFDVHRHLSRPDSRVVRLIERMGAQ 253 Query: 127 AKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 A + +L +NK+D V K + LL+ A+ L E+ FM+S KG G D+ +L Sbjct: 254 AHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYERYFMISGLKGSGVKDLTQFLMEQ 313 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW +S+ M + + E+ RE+L H+H+EIPY W+E +DGS+ I Sbjct: 314 AVKRPWDEDPFTMSEEVMKNISLEVVRERLLDHVHQEIPYGIDHRLIDWKELRDGSLRIE 373 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 Q + + SQ+KI++GK G I I +EA +E+ I ++ VHLIL V+V+ Sbjct: 374 QHLITPKQSQRKILVGKKGSKIGRIGIEANEELRSIFKRDVHLILQVRVK 423 >gi|255014875|ref|ZP_05287001.1| GTP-binding protein Era [Bacteroides sp. 2_1_7] gi|256840957|ref|ZP_05546464.1| GTP-binding protein Era [Parabacteroides sp. D13] gi|256736800|gb|EEU50127.1| GTP-binding protein Era [Parabacteroides sp. D13] Length = 297 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 152/278 (54%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+NR VG ++SI+T K QTTR + GIV+ + QIV+ DTPG+ Sbjct: 7 KSGFVNIVGNPNVGKSTLMNRLVGERISIITSKAQTTRHRIMGIVNTDDMQIVYSDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D + N ++ L + ++L++NKI Sbjct: 67 LRPNYKLQESMLNFSQSALGDADVLLYVTDVVETIDKN-NEFLARVQSIECPVLLLINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D L + +L+ + +SA D V + +P +P + D ++D Sbjct: 126 DQTNQPELEKLVAQWKELLPKAEIIPISALSNFNIDYVKRRVEELMPDSPPYFEKDALTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPY+ VV E ++E D I I+ +I VER +QK I++ Sbjct: 186 KPARFFVTEIIREKILLYYQKEIPYAVEVVVELFKE-DDELIHIKALIIVERDTQKGIII 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G GQ +K + A+K+I + V L +FVKV+KDW Sbjct: 245 GHQGQALKKVGAMARKDIERFFGKKVFLEMFVKVEKDW 282 >gi|225182107|ref|ZP_03735535.1| GTP-binding protein Era [Dethiobacter alkaliphilus AHT 1] gi|225167194|gb|EEG76017.1| GTP-binding protein Era [Dethiobacter alkaliphilus AHT 1] Length = 302 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 159/280 (56%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +AL+G N GKSTL+N FVG K++I++ K QTTR+ +RGI++ + Q VFLDTPGI Sbjct: 9 RSGFIALIGRPNVGKSTLMNAFVGEKMAIISDKPQTTRNQIRGILTADDYQAVFLDTPGI 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M++++ T++ D++ +VD+ ++++++ + +IL+ NK Sbjct: 69 HKPQHKLGEKMVQVAVRTLQEVDLILFLVDAAAGPGAGDDYIIRQLSDVETPVILVANKA 128 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E E L + VSA G +++L+ + +LP P Y D I+D Sbjct: 129 DEAGMEAAQNVLEHYLPLYPFKAALPVSAITGINQEELLSLIVDSLPEGPQYYPEDMITD 188 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCV--VTEKWEEKKDGSILIRQVIYVERPSQKKI 258 P AE+ REK+ EIP++ V ++ K +D + I+ IYVER SQK I Sbjct: 189 QPERLIVAELVREKVLQLTRDEIPHAIAVEIISMKNRAGRD-LVDIQANIYVERDSQKGI 247 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K + +A+ +I +L PV L L+VKV+KDW Sbjct: 248 VIGKRGALLKEVGKQARADIEALLGTPVFLELWVKVKKDW 287 >gi|116492866|ref|YP_804601.1| GTPase [Pediococcus pentosaceus ATCC 25745] gi|122265670|sp|Q03F63|ERA_PEDPA RecName: Full=GTPase Era gi|116103016|gb|ABJ68159.1| GTPase [Pediococcus pentosaceus ATCC 25745] Length = 304 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 159/278 (57%), Gaps = 1/278 (0%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA+VG N GKST +N +G KV+I+++ QTTR+ ++GI + QIVF+DTPGI Sbjct: 10 SGFVAIVGRPNVGKSTFLNYVIGQKVAIMSNVPQTTRNKIQGIYTTDREQIVFIDTPGIH 69 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI-LILNKI 140 + + M++ + S++ D + +V++ + +++ + K + R + L++NKI Sbjct: 70 KSHNKLGDFMVQSAMSSLNEVDAIMFMVNADEPRGAGDNYIIERLKKITDRPVYLVINKI 129 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ LL + + + F +SA +G+ ++++ L +P P Y DQ++D Sbjct: 130 DLVHPDELLPIVDSYKDAMDWTEVFPISALQGNNINELVTTLSQHMPEGPKYYPDDQVTD 189 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P +E+ REK+ +E+P+S VV E + +G + I+ I V+R SQK I++ Sbjct: 190 HPERFVVSELIREKVLQLTRQEVPHSVAVVIETMKSNDEGLVNIQATIIVDRSSQKGIVI 249 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G+ +K I A+ +I +L V+L L+VKV + W Sbjct: 250 GKGGKMLKEIGSRARVDIEHLLGSRVYLELWVKVSEGW 287 >gi|317502138|ref|ZP_07960316.1| GTP-binding protein Era [Lachnospiraceae bacterium 8_1_57FAA] gi|331090350|ref|ZP_08339233.1| GTP-binding protein Era [Lachnospiraceae bacterium 3_1_46FAA] gi|316896455|gb|EFV18548.1| GTP-binding protein Era [Lachnospiraceae bacterium 8_1_57FAA] gi|330401305|gb|EGG80893.1| GTP-binding protein Era [Lachnospiraceae bacterium 3_1_46FAA] Length = 298 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 162/283 (57%), Gaps = 1/283 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++++ +SG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ +E QIVF+ Sbjct: 1 MREDFKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M+ ++ ++ D+V +V+ + +++++ K + ++L Sbjct: 61 DTPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVVL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID VK E +L + K + VSA G D+++ + LP P Y Sbjct: 121 VINKIDMVKKEEILTFIDAYRKEYDFAEIVPVSARSGDNTDELIKVILKYLPYGPQFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P AE+ REK L++EIP+ V ++ + ++ + I I ER S Sbjct: 181 DTVTDQPERQIVAELIREKALHCLNEEIPHGIAVAIDRMKAERR-VMHIDATIICERDSH 239 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+ EI +L V+L L+VKVQK+W Sbjct: 240 KGIIIGKQGSMLKKIGSTARYEIERLLGCKVNLKLWVKVQKNW 282 >gi|37222111|gb|AAP49305.1| Uvs062 [uncultured bacterium] Length = 304 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 160/286 (55%), Gaps = 4/286 (1%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + +Q + ++G V ++G N GKSTL+N FVG ++SI+T K QTTR + GIV+ ++ Q+V Sbjct: 8 NIMQMSHKAGFVNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRILGIVNGEDFQLV 67 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSR 132 DTPGI + M+ S + ADI+ +V+ ++LK +I Sbjct: 68 LSDTPGIIKPAYEMQESMMNFVKSAFEDADILIYMVEIGEQDLKD--EAFFNKIIHAKIP 125 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ++L+LNKID E+L EQ + V + F +SA + +V + LP +P Sbjct: 126 VLLLLNKIDNSNQEQLEEQVAFWKEKVPNAEIFPISALQNFNVPEVFGRIIELLPESPAY 185 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y DQ++D P F E REK+ L+ KEIPY+ +VTE++ E + I IR +I VER Sbjct: 186 YPKDQLTDKPERFFVNETIREKILLNYSKEIPYAVEIVTEEFFE-DEKIIRIRSIIMVER 244 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +QK I++G G +K + +A+ ++ + + +H+ L VKV K+W Sbjct: 245 ETQKGIIIGHKGAALKKVGTDARADLEKFFGKQIHIELVVKVNKNW 290 >gi|311745512|ref|ZP_07719297.1| GTP-binding protein Era [Algoriphagus sp. PR1] gi|126578067|gb|EAZ82287.1| GTP-binding protein Era [Algoriphagus sp. PR1] Length = 297 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 162/296 (54%), Gaps = 12/296 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q ++G V ++G N GKSTL+N VG ++SI++ K QTTR + G+ + + QIVF D Sbjct: 3 QTKHQAGFVNIIGKPNVGKSTLMNILVGERLSIISSKAQTTRHRILGLTNTENYQIVFSD 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ + HK M+ +++ AD+V V D + E I +++ +I + +IL Sbjct: 63 TPGMLKPQYELHKNMMSFVNISLEDADVVLFVTDLY-ETDEEIVEIIDKINQSGIPIILA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NKID K +L + E + + +SA + D VL + LP P Y + Sbjct: 122 INKIDLAKEGQLEKVTEYWTSRIKADVVIPISAGEEFNTDKVLQEILERLPEHPPFYDKE 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 +++D F +EI REK+F + KE+PYS+ V E + K+ I IR IYVER SQK Sbjct: 182 ELTDRSERFFASEIIREKIFNNYKKEVPYSTEVNVEDF-HVKNKIIRIRATIYVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW----------GHDP 302 I++G G+ +K + +EA++E+ + + V L FVKV+ +W G+DP Sbjct: 241 GIIIGDKGKALKKVGIEAREELEKFFGKQVFLETFVKVEANWRKNKSKLKKFGYDP 296 >gi|297738021|emb|CBI27222.3| unnamed protein product [Vitis vinifera] Length = 423 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 159/290 (54%), Gaps = 11/290 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ RS V ++GA NAGKS+L N VG KV+ V+ K TT V G++++ +QI F D Sbjct: 134 EEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRKTNTTTHEVLGVMTKGNTQICFFD 193 Query: 77 TPGIFNAKDSY----HKLMIRLSWSTIKHADIVCLVVDSHRELK------VNIHDLLKEI 126 TPG+ Y + + +WS++ D++ ++ D HR L V + + + Sbjct: 194 TPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIFDVHRHLSRPDSRVVRLIERMGAQ 253 Query: 127 AKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 A + +L +NK+D V K + LL+ A+ L E+ FM+S KG G D+ +L Sbjct: 254 AHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYERYFMISGLKGSGVKDLTQFLMEQ 313 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW +S+ M + + E+ RE+L H+H+EIPY W+E +DGS+ I Sbjct: 314 AFKRPWDEDPFTMSEEVMKNISLEVVRERLLDHVHQEIPYGIDHRLIDWKELRDGSLRIE 373 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 Q + + SQ+KI++GK G I I +EA +E+ I ++ VHLIL V+V+ Sbjct: 374 QHLITPKQSQRKILVGKKGSKIGRIGIEANEELRSIFKRDVHLILQVRVK 423 >gi|150009039|ref|YP_001303782.1| GTP-binding protein Era [Parabacteroides distasonis ATCC 8503] gi|262383938|ref|ZP_06077074.1| GTP-binding protein Era [Bacteroides sp. 2_1_33B] gi|298375726|ref|ZP_06985682.1| GTP-binding protein Era [Bacteroides sp. 3_1_19] gi|301312103|ref|ZP_07218025.1| GTP-binding protein Era [Bacteroides sp. 20_3] gi|149937463|gb|ABR44160.1| GTP-binding protein Era [Parabacteroides distasonis ATCC 8503] gi|262294836|gb|EEY82768.1| GTP-binding protein Era [Bacteroides sp. 2_1_33B] gi|298266763|gb|EFI08420.1| GTP-binding protein Era [Bacteroides sp. 3_1_19] gi|300830205|gb|EFK60853.1| GTP-binding protein Era [Bacteroides sp. 20_3] Length = 296 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 152/278 (54%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+NR VG ++SI+T K QTTR + GIV+ + QIV+ DTPG+ Sbjct: 6 KSGFVNIVGNPNVGKSTLMNRLVGERISIITSKAQTTRHRIMGIVNTDDMQIVYSDTPGV 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ V D + N ++ L + ++L++NKI Sbjct: 66 LRPNYKLQESMLNFSQSALGDADVLLYVTDVVETIDKN-NEFLARVQSIECPVLLLINKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D L + +L+ + +SA D V + +P +P + D ++D Sbjct: 125 DQTNQPELEKLVAQWKELLPKAEIIPISALSNFNIDYVKRRVEELMPDSPPYFEKDALTD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPY+ VV E ++E D I I+ +I VER +QK I++ Sbjct: 185 KPARFFVTEIIREKILLYYQKEIPYAVEVVVELFKE-DDELIHIKALIIVERDTQKGIII 243 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G GQ +K + A+K+I + V L +FVKV+KDW Sbjct: 244 GHQGQALKKVGAMARKDIERFFGKKVFLEMFVKVEKDW 281 >gi|229815234|ref|ZP_04445570.1| hypothetical protein COLINT_02280 [Collinsella intestinalis DSM 13280] gi|229809244|gb|EEP45010.1| hypothetical protein COLINT_02280 [Collinsella intestinalis DSM 13280] Length = 340 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 156/288 (54%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + RSG VALVG NAGKSTL+N G KV+I + QTTR +R +V+ ++ Q+V + Sbjct: 41 VPEGFRSGFVALVGRPNAGKSTLLNACYGEKVAITSPVAQTTRRRLRAVVNREDCQLVIV 100 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI KD + + + + D++ V+D+ + + + +A + +L Sbjct: 101 DTPGIHKPKDGLGSELNKSALGELSDVDVIAFVIDASAPIGRGDAWVAERVAAAKAPKVL 160 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +L K D PE +L+Q E A LV + +VS+T+G + ++ + + LP P + Sbjct: 161 VLTKADLASPEEMLKQLEAARALVEFDDEIVVSSTEGFNVEAFVDVVANYLPEGPRWFPE 220 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 +D AE REK+ H +EIP++ V+ +++E K + + +YVER Q Sbjct: 221 GMGTDEADEVMVAEFVREKVLRHTREEIPHAVGVMCDEFERPKRDLLRLHATVYVEREGQ 280 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++GK G+ IK I +EA++++ + V L L VKV+ W D + Sbjct: 281 KGIIVGKGGEMIKRIGVEARRDLERMFGCRVFLGLDVKVKPHWREDAR 328 >gi|253581692|ref|ZP_04858916.1| GTP binding protein [Fusobacterium varium ATCC 27725] gi|251836041|gb|EES64578.1| GTP binding protein [Fusobacterium varium ATCC 27725] Length = 297 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 95/281 (33%), Positives = 162/281 (57%), Gaps = 4/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ ++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILN 138 AK + M + +K D++ ++D +E+ +++ + AK++ R IL++N Sbjct: 62 HKAKHLLGEYMTNSAIRVLKDVDVILFLLDGSQEISTGDQFVMERVMEAKKTPR-ILVIN 120 Query: 139 KIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID + E+L+ ++ E+ KL + +S G +L + + Y D Sbjct: 121 KIDKLSDEQLVAKREEVKEKLGEFDAVVEISGQYAFGLPRLLEAIEPFMEEGIKYYPDDM 180 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +D+ ++ EI REK+ L EIP+S + ++++G IYVER SQK Sbjct: 181 YTDMSVYKIITEIVREKILLKTRDEIPHSVAIEILDVAKRENGRDKFDVNIYVERDSQKG 240 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GKNG+ +K I EA+K+I +L +P++L L+VKV+ DW Sbjct: 241 IIIGKNGKLLKEIGTEARKDIEALLGEPIYLTLWVKVKDDW 281 >gi|262368561|ref|ZP_06061890.1| GTP-binding protein Era [Acinetobacter johnsonii SH046] gi|262316239|gb|EEY97277.1| GTP-binding protein Era [Acinetobacter johnsonii SH046] Length = 342 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 170/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+E + + RSG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSEQGTEIPTDFRSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 +SQ VF+DTPG+ + + +K+M R + S ++ ++V V+D+ + + N +L+++ Sbjct: 85 AKSQAVFVDTPGMHKKEVRAINKMMNRAASSALRDVNLVLFVLDADKWTQ-NDELVLEKL 143 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NKID ++ + L + KL+ + VSA +G D + + + Sbjct: 144 KNAEMPVILVINKIDTLENKNHALPLIQERAKLMNFAEIVPVSALRGANLDHLRDTIEKY 203 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQ++D +EI REK+ L +E+PY V V EK Sbjct: 204 LPFQPPMYSLDQLTDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKT 263 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+RP QK I++G+ G +K I ++A+ ++ ++ EQ + L L+VKV Sbjct: 264 GRPKPACTYIDATIFVDRPGQKAIVIGEKGAKLKKIGMDARIDMEKMFEQKIMLTLWVKV 323 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 324 KGGWSDDERAL 334 >gi|108800418|ref|YP_640615.1| GTP-binding protein Era [Mycobacterium sp. MCS] gi|119869547|ref|YP_939499.1| GTP-binding protein Era [Mycobacterium sp. KMS] gi|122976748|sp|Q1B6C5|ERA_MYCSS RecName: Full=GTPase Era gi|189037656|sp|A1UIQ1|ERA_MYCSK RecName: Full=GTPase Era gi|108770837|gb|ABG09559.1| GTP-binding protein Era [Mycobacterium sp. MCS] gi|119695636|gb|ABL92709.1| GTP-binding protein Era [Mycobacterium sp. KMS] Length = 299 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 159/289 (55%), Gaps = 7/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG KV+I +++ QTTR +RGIV E QI+ +DTPG+ Sbjct: 5 RSGFVCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDEFQIILVDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L +T D++ L + + + IH+ ++ +A R++ L++I+ Sbjct: 65 HRPRTLLGQRLNDLVKTTYSEVDVIGLCIPADEAIGPGDRWIHEQIRAVAPRTT-LVVIV 123 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V +R+ Q ++LV + + VSAT G D + + L LP P Y Sbjct: 124 TKIDKVPRDRVAAQLMAVSELVGPDAEIVPVSATTGEQLDVLTDVLAGKLPPGPAFYPDG 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPS 254 +++D P AE+ RE + E+P+S VV ++ E +D I + ++YVER S Sbjct: 184 ELTDEPEETLMAELIREAALEGVRDELPHSLAVVIDEVSPREDRDDLIDVHAILYVERDS 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++GK G ++ + A+ +I ++L V+L L VK+ K+W DPK Sbjct: 244 QKGIVIGKGGARLREVGTAARLQIEKLLGTKVYLDLRVKIAKNWQRDPK 292 >gi|291520563|emb|CBK75784.1| GTP-binding protein Era [Butyrivibrio fibrisolvens 16/4] Length = 302 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 158/283 (55%), Gaps = 3/283 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDT 77 N +SG V +VG N GKSTL+N +G K++I ++K QTTR+ ++ + +++ QIVFLDT Sbjct: 3 NFKSGFVTIVGRPNVGKSTLMNHIIGQKIAITSNKPQTTRNRIQTVYTDENVGQIVFLDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ AK+ + M+ + STI D++ +++ ++ + + +A + +IL++ Sbjct: 63 PGMHQAKNKLGEYMMSAAKSTINDVDLILWLIEPDTKVGAGDKKIAELLATAEAPVILVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID ++ E + L + VSA G GCDD+L + LP P Y + Sbjct: 123 NKIDMADGAKVGETIQAFKDLCDFIEVVPVSALHGEGCDDLLATIFKHLPEGPAFYDEET 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL--IRQVIYVERPSQ 255 +++ + TAEI REK L+ E+P+ + + +E+ + I I E+ S Sbjct: 183 VTNQTLREITAEIIREKSLHALNDEVPHGIAIAIDTMKERPGKKAMWDIEATIICEKNSH 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G IK I A+ EI ++L+ V+L LFVKV+KDW Sbjct: 243 KGIIIGKGGAMIKKIGTNARYEIEKLLDAQVNLKLFVKVKKDW 285 >gi|120404786|ref|YP_954615.1| GTP-binding protein Era [Mycobacterium vanbaalenii PYR-1] gi|119957604|gb|ABM14609.1| GTP-binding protein Era [Mycobacterium vanbaalenii PYR-1] Length = 305 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 102/292 (34%), Positives = 161/292 (55%), Gaps = 10/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG KV+I +++ QTTR +RGIV E QIV +DTPG+ Sbjct: 8 RSGFVCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDEFQIVLVDTPGL 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L T D++ + + + ++ I++ ++ +A R++ LI I+ Sbjct: 68 HRPRTLLGQRLNELVKDTYSEVDVIGMCIPADEKIGPGDRWIYEQIRAVAPRTT-LIAIV 126 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V +R+ EQ ++L + + VSAT G D +++ L S LP P Y Sbjct: 127 TKIDKVSKDRVGEQLLAVSELFGPDADIVPVSATSGTQLDVLIDVLVSKLPPGPAFYPDG 186 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK-----DGSILIRQVIYVE 251 +++D P AE+ RE + E+P+S VV ++ EE+ D I + ++YVE Sbjct: 187 ELTDEPEEVLMAELIREAALEGVRDELPHSLAVVIDEVEERPGRPDDDPLIDVHAILYVE 246 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 R SQK I++GK G ++ + A+ +I ++L V+L L VK+ K+W DPK Sbjct: 247 RDSQKGIVIGKGGARLREVGTAARTQIEKLLGTKVYLDLRVKIAKNWQRDPK 298 >gi|126436041|ref|YP_001071732.1| GTP-binding protein Era [Mycobacterium sp. JLS] gi|189037655|sp|A3Q264|ERA_MYCSJ RecName: Full=GTPase Era gi|126235841|gb|ABN99241.1| GTP-binding protein Era [Mycobacterium sp. JLS] Length = 299 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 159/289 (55%), Gaps = 7/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG KV+I +++ QTTR +RGIV E QI+ +DTPG+ Sbjct: 5 RSGFVCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDEFQIILVDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L +T D++ L + + + IH+ ++ +A R++ L++I+ Sbjct: 65 HRPRTLLGQRLNDLVKTTYSEVDVIGLCIPADEAIGPGDRWIHEQIRAVAPRTT-LVVIV 123 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V +R+ Q ++L+ + + VSAT G D + + L LP P Y Sbjct: 124 TKIDKVPKDRVAAQLMAVSELIGPDAEIVPVSATTGEQLDVLTDVLAGKLPPGPAFYPDG 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPS 254 +++D P AE+ RE + E+P+S VV ++ E +D I + ++YVER S Sbjct: 184 ELTDEPEETLMAELIREAALEGVRDELPHSLAVVIDEVSPREDRDDLIDVHAILYVERDS 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++GK G ++ + A+ +I ++L V+L L VK+ K+W DPK Sbjct: 244 QKGIVIGKGGARLREVGTAARLQIEKLLGTKVYLDLRVKIAKNWQRDPK 292 >gi|51891672|ref|YP_074363.1| Era family GTP-binding protein [Symbiobacterium thermophilum IAM 14863] gi|51855361|dbj|BAD39519.1| Era family GTP-binding protein [Symbiobacterium thermophilum IAM 14863] Length = 316 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 155/295 (52%), Gaps = 17/295 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG ++VG N GKSTL+N FV AK++I++ K QTTR+ + G+ + ++Q+VFLDTPGI Sbjct: 7 RSGFCSIVGRPNVGKSTLLNAFVAAKLAIMSDKPQTTRNRILGVYNRPDAQVVFLDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + M +++ TI D+V VVD + ++ RS R IL++NK Sbjct: 67 HKPRHRLGEYMNKVAIGTIPEVDVVLFVVDGSVPEPGEGDRYVADVVARSGRPAILVVNK 126 Query: 140 IDCVK----------------PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 +D VK PE E + + VSA + D +L+ + Sbjct: 127 MDRVKRGDWYAVMDAYKALAQPEARSENPDPGAPTIEWIDIVPVSALEHKNIDALLDLIV 186 Query: 184 STLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL 243 + P Y D I+D P AE REK+ E+P+S V E+ + + G++ Sbjct: 187 QQMEEGPKYYPEDMITDQPERFVIAEFIREKILQLTRDEVPHSVAVEVEELQRRPTGTVY 246 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + IYVER SQK I++GK G +K I A+++I ++L ++L LFVKV++DW Sbjct: 247 VSASIYVERESQKGIIIGKRGAMLKEIGARARQDIEQMLGSKIYLELFVKVKEDW 301 >gi|114564092|ref|YP_751606.1| GTP-binding protein Era [Shewanella frigidimarina NCIMB 400] gi|114335385|gb|ABI72767.1| GTP-binding protein Era [Shewanella frigidimarina NCIMB 400] Length = 334 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 166/288 (57%), Gaps = 7/288 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI ++ SQI+F+DTPG+ Sbjct: 41 GMVAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRIMGIHTDGPSQIIFIDTPGLHI 100 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNK 139 K + ++LM R + S++ +V VVD + +L++I R+ ++IL +NK Sbjct: 101 EEKRAINRLMNRAAASSLADVAMVIFVVDGM-TWTADDEMVLQKIQHRNDDRKIILAINK 159 Query: 140 IDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D +K + L E+A K F ++ +SA+KG +L+ +LP AP+ + D Sbjct: 160 VDNIKDKESLFPYLTELAKKFDF-DEILPISASKGTNVQRILDMARESLPEAPFYFPEDY 218 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D +EI REKL L E+PY + V E+++ ++G I +I VER QK+ Sbjct: 219 VTDRSQRFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQINALILVEREGQKR 278 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++G G+ I+TI+ +++ ++ + E V L ++VKV+ W D + Sbjct: 279 MVIGNKGERIRTIATQSRLDMETLFENKVFLEVWVKVKSGWADDERAL 326 >gi|300813883|ref|ZP_07094188.1| GTP-binding protein Era [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512070|gb|EFK39265.1| GTP-binding protein Era [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 297 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 104/282 (36%), Positives = 159/282 (56%), Gaps = 6/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKST++N +G K+S +++K QTTR + I ++K+ QIVFLDTPGI Sbjct: 5 KSGYVSIVGRANVGKSTMLNSLIGQKISAISNKAQTTREKISFIYTDKDCQIVFLDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE---LKVNIHDLLKEIAKRSSRLILIL 137 K+ M+ S S++ ADI+ +VD+ ++ L +I D LK + ++IL++ Sbjct: 65 QKPKNKLGNFMLNESLSSLSEADIITYIVDTSKKIGNLDSSIIDTLK--KLKDKKIILLI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID + E L E +K+ +SA K G D+ + + L P Y D Sbjct: 123 NKIDLIAKEELFPIIEAYDKIGIFSHIIPISAMKNDGVDEYIEVIKENLSPGPMFYPEDY 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D EI REK L +E+P+ V EK++ + D I I VIYVER S K Sbjct: 183 VTDKSEKFLAEEIIREKGLRFLQEEVPHGLAVGIEKFKMRSDKEIYDIDAVIYVERDSHK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A++E+ +L+ V+L L+VKV K+W Sbjct: 243 AIVIGKGGSMLKKIGTSARRELENMLDSKVNLKLWVKVSKNW 284 >gi|170767223|ref|ZP_02901676.1| GTP-binding protein Era [Escherichia albertii TW07627] gi|170123557|gb|EDS92488.1| GTP-binding protein Era [Escherichia albertii TW07627] Length = 301 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 163/295 (55%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNRAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|333000426|gb|EGK20008.1| GTP-binding protein Era [Shigella flexneri VA-6] Length = 301 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 164/295 (55%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K+I E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDIQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|283786182|ref|YP_003366047.1| GTP-binding protein [Citrobacter rodentium ICC168] gi|282949636|emb|CBG89255.1| GTP-binding protein [Citrobacter rodentium ICC168] Length = 301 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 163/292 (55%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVIL 121 Query: 136 ILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D V K + L +A+++ F++ M SA G D + + LP A + Sbjct: 122 AVNKVDNVQEKADLLPHLQFLASQMNFLDIVPM-SAETGMNVDTIAGIVRKHLPEAVHHF 180 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D I+D +EI REKL L E+PYS V E++ + G I +I VER Sbjct: 181 PEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVERE 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 241 GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|322391812|ref|ZP_08065277.1| GTP-binding protein Era [Streptococcus peroris ATCC 700780] gi|321145292|gb|EFX40688.1| GTP-binding protein Era [Streptococcus peroris ATCC 700780] Length = 299 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 104/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIMERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + ADQI Sbjct: 123 IDKVHPDQLLAQIDDFRNQMDFKE-IVPISALQGNNVSHLVDILSDNLEEGFQYFPADQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ L +E+P+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMIREKVLLLTREEVPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIVIGKQGAMLKKIGTMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|255037604|ref|YP_003088225.1| GTP-binding protein Era [Dyadobacter fermentans DSM 18053] gi|254950360|gb|ACT95060.1| GTP-binding protein Era [Dyadobacter fermentans DSM 18053] Length = 308 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 162/284 (57%), Gaps = 7/284 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES----QIVF 74 N R+G V+++G N GKSTL+N VG ++SI+T K QTTR + GI++ Q+V+ Sbjct: 14 NHRAGFVSIIGKPNVGKSTLMNVLVGERMSIITSKAQTTRHRIIGILNGNHENIPFQLVY 73 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPG+ H M+ +++ AD+V VV+ K H++L + + S ++ Sbjct: 74 SDTPGVIKPSYKLHDSMMTFVKGSLEDADVVLFVVEIGE--KAAEHEVLPLLNRTQSPVV 131 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 L+LNKID E + ++ + + +SA + + + + + LP P + Sbjct: 132 LVLNKIDLSNEEEVKQKMQEWENEIHPAAIIPISALEKANIGTLFDAVVTRLPFHPPYFD 191 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D+++D P F +EI REK+FL+ +EIPYSS VV +++++ D I+IR I VER S Sbjct: 192 EDELTDKPERFFASEIIREKIFLNYRQEIPYSSEVVITEFKDRDD-IIVIRAEILVERKS 250 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++G+ G+ +K + ++A++++ E + V L VKV+ DW Sbjct: 251 QKGIIIGEKGEMLKKVGIQARQDLEEFFGKKVFLEQHVKVEPDW 294 >gi|304310580|ref|YP_003810178.1| Small GTP-binding protein Era [gamma proteobacterium HdN1] gi|301796313|emb|CBL44521.1| Small GTP-binding protein Era [gamma proteobacterium HdN1] Length = 305 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 169/300 (56%), Gaps = 8/300 (2%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 E+ D +R G +A+VG N GKSTL+N +G K+SI + K QTTR + GI ++ Sbjct: 1 MTENTDVTLSGTRCGFIAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRILGIKTDG 60 Query: 69 ESQIVFLDTPGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKE 125 Q +++DTPGI + + ++ M R + ++K D+V VVDS LK D +L + Sbjct: 61 PVQAIYVDTPGIHRGGEKALNRFMNRSALESVKDVDLVLFVVDS---LKWTEGDEWVLAK 117 Query: 126 IAKRSSRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 +A+ S+ +IL++NK+D V+ +RLL E + F +SA +G ++ + + Sbjct: 118 LARVSAPVILVVNKVDQVEDKKRLLPVLESLGQKRDFAAIFPLSALRGKNLAELESEVGK 177 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI 244 LP +++ +QI+D AEI REK+ L +EIPY V E++E KD I Sbjct: 178 HLPEREFLFDPEQITDRSQRFIAAEIVREKIMRQLGQEIPYDLTVEIEQFEW-KDTCWHI 236 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I VERP QK I++GK G+ +K + EA+ ++ ++LE+ V L L+VKV+ W D + Sbjct: 237 AARILVERPGQKAIVIGKGGERLKRVGTEARLDLEKMLEEKVMLKLWVKVKSGWSDDERA 296 >gi|283769577|ref|ZP_06342473.1| GTP-binding protein Era [Bulleidia extructa W1219] gi|283103845|gb|EFC05231.1| GTP-binding protein Era [Bulleidia extructa W1219] Length = 297 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 158/278 (56%), Gaps = 1/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V + G NAGKSTL+N VG KV+IV+ K QTTRS +RGI+S ++ QI+F DTPGI Sbjct: 2 RSGFVGIAGRPNAGKSTLINALVGEKVAIVSEKSQTTRSEIRGILSREDGQIIFTDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D M + +S I+ DI+ LVVD+ +L+ I+ + LILNK+ Sbjct: 62 HKPLDRLGVRMNKEVYSVIQDVDILYLVVDASVPFAKGDAFVLEHISNLKKPVFLILNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + ++++ E K + F +SA +D++ + LP ++Y D ISD Sbjct: 122 DRLSKKKVIALLEEWAKRYPFAEYFPLSAKFHLKLEDLIKTTLNYLPEGGYLYPCDLISD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + AE+ REK+ E+P++ V E E KK+ + I+ I V+RPSQK I++ Sbjct: 182 NALDFRLAEMIREKILRKTEDEVPHACAVYIENREVKKN-ACYIQATILVDRPSQKPILI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K I A++++ +L + V L LFV+V+++W Sbjct: 241 GKEGSMLKKIGSLAREDMEILLGKRVFLELFVRVEEEW 278 >gi|326791151|ref|YP_004308972.1| GTP-binding protein Era [Clostridium lentocellum DSM 5427] gi|326541915|gb|ADZ83774.1| GTP-binding protein Era [Clostridium lentocellum DSM 5427] Length = 302 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/279 (31%), Positives = 162/279 (58%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKSTL+N+ +G KV+I+++K QTTR+ ++ +++ K Q VF+DTPGI Sbjct: 6 KSGFVSIIGRPNVGKSTLMNKLIGEKVAIMSNKPQTTRNRIQTVLTTKHYQAVFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ + M++ + +T+ D + +V++ + ++++ + + + L +NKI Sbjct: 66 HTPKNKLGEFMVKSAMTTLNEVDAIFYLVEAEPFIGKTDQEIIERLKGIQTPVFLCINKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E +L+ E + ++ +SA + D +L + + LP P + +D ++D Sbjct: 126 DSVPRETVLKTIETYREAYDFKEIIPISAYENTNVDAILKCMPAYLPEGPQFFPSDMLTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P AE+ REK L KEIP+ + E ++++G I+ I I ER S K+I+ Sbjct: 186 QPERQIVAEMIREKALHLLDKEIPHGIAIEIETMRKREEGDIVDIEATIVCERDSHKRII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK GQ IK I +A+ ++ +L ++L L+VKV+K+W Sbjct: 246 IGKQGQMIKAIGSKARYDMERLLGSKIYLTLWVKVKKNW 284 >gi|325478364|gb|EGC81479.1| ribosome biogenesis GTPase Era [Anaerococcus prevotii ACS-065-V-Col13] Length = 293 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 164/290 (56%), Gaps = 6/290 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+ + +G K+SI+++K QTTR ++ I ++++SQI+FLDTPGI Sbjct: 3 KSGFVSVVGRANVGKSTLMEKILGEKISIISNKAQTTRDKIQIIYNDEDSQIIFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ + ++ S ++ +DI+ VVD E+ ++L + K IL++NK Sbjct: 63 QTPRNKLQERLLTFSEESLAESDIITFVVDDSEEIGRIDSEILDMLGKIKLPKILLINKT 122 Query: 141 DCVKPERLLEQAEI-ANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D ER+ A+I AN + ++ +SA + D L + L P Y D I Sbjct: 123 DLADSERI---AKIRANFRAYDFDRIIEISALEDKNIDIYLETIKEMLDFGPAYYDRDMI 179 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D +EI REK +L +E+P+ V + ++++ + ++ IR I VE+PS K+ Sbjct: 180 TDKSERFIVSEIIREKALRNLSEEVPHGIAVRIDDFKQRDNKKLIDIRASIIVEKPSHKE 239 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 I++GK G IK I ++A+ EI L V+L L+VKV+KDW K + Sbjct: 240 IVIGKKGSMIKKIGMDARYEIEAFLSSKVNLQLWVKVEKDWRKKEKLVDR 289 >gi|210617164|ref|ZP_03291431.1| hypothetical protein CLONEX_03653 [Clostridium nexile DSM 1787] gi|210149439|gb|EEA80448.1| hypothetical protein CLONEX_03653 [Clostridium nexile DSM 1787] Length = 299 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 159/280 (56%), Gaps = 1/280 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + +SG V L+G N GKSTL+N +G K++I ++K QTTR+ ++ +++ +E QIVF+DTP Sbjct: 4 DYKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTMEEGQIVFVDTP 63 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI AK+ + M+ ++ T+ D+V +V+ + + ++ K + ++L++N Sbjct: 64 GIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIADQLKKVKTPVVLVIN 123 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D VK E +L + K+ + VSA G D+++ + LP P Y D + Sbjct: 124 KVDMVKREEVLTFIDAYRKIYDFAEIVPVSARSGENTDELVKVILQYLPYGPQFYDEDTV 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P +E+ REK L++EIP+ V ++ + +K + I I ER S K I Sbjct: 184 TDQPERQIVSELIREKALHCLNEEIPHGIAVSIDRMKARKK-VMDIDATIICERDSHKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+ EI +L+ V+L L+VKV+KDW Sbjct: 243 IIGKQGSMLKKIGSTARFEIERLLDCKVNLQLWVKVKKDW 282 >gi|82777992|ref|YP_404341.1| GTP-binding protein Era [Shigella dysenteriae Sd197] gi|309784619|ref|ZP_07679254.1| GTP-binding protein Era [Shigella dysenteriae 1617] gi|123561860|sp|Q32CV5|ERA_SHIDS RecName: Full=GTPase Era gi|81242140|gb|ABB62850.1| GTP-binding protein [Shigella dysenteriae Sd197] gi|308927516|gb|EFP72988.1| GTP-binding protein Era [Shigella dysenteriae 1617] Length = 301 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 164/295 (55%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R ++ +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTLDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|108763403|ref|YP_631947.1| GTP-binding protein Era [Myxococcus xanthus DK 1622] gi|108467283|gb|ABF92468.1| GTP-binding protein Era [Myxococcus xanthus DK 1622] Length = 314 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 160/302 (52%), Gaps = 22/302 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG AL+G N GKSTL+N G K++IV+ K QTTR+ + G+V+ E Q+ F+DTPGI Sbjct: 8 RSGFAALIGRPNVGKSTLLNALTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAFIDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH-------DLLKEIAKRSSRL 133 AK ++ M+ ++ + D+V +++ K + D L++I K + Sbjct: 68 HQAKGELNRYMVEVALQAAEEVDLVLFLIEPPASEKPEVSPGNRAILDRLQKIGKPT--- 124 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L++NKID V +LL ++ + + +SA + G + + + + LP V+ Sbjct: 125 FLVINKIDSVPKSQLLPLIDLYRQEFPFAEVVPISAREKDGVERLFHTVLGHLPEGENVF 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK------------DGS 241 D ++D AE RE++ H +EIPYS+ VV + ++E + G Sbjct: 185 DEDMLTDQQERALVAEYIREQVLRHCRQEIPYSTAVVVDIFDESEREPRPGTPPNQLGGL 244 Query: 242 ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I I I+VER SQK I++GK GQ +KTI +A+K + +L V+L L V+V+ W Sbjct: 245 IRIAASIFVERDSQKAIIIGKQGQMLKTIGTDARKSVQRLLGAHVYLDLRVRVEPRWSER 304 Query: 302 PK 303 P+ Sbjct: 305 PE 306 >gi|237737545|ref|ZP_04568026.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229419425|gb|EEO34472.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 298 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 160/281 (56%), Gaps = 4/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ ++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFNDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILN 138 AK + M + +K D++ V+D +E+ +++++ AKR+ R IL++N Sbjct: 62 HKAKHLLGEYMTNSAIRVLKDVDVILFVLDGSQEISTGDQFVMEKVKEAKRTPR-ILVVN 120 Query: 139 KIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID + E+L ++ EI KL + +S G +L + L Y D Sbjct: 121 KIDKLNDEQLKAKRLEIEEKLGEFDGIVEISGQYAIGLPKLLEKIDPFLEEGIKYYPDDM 180 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +D+ ++ EI REK+ L EIP+S + E ++ G IYVER SQK Sbjct: 181 YTDISVYKIITEIVREKILLKTRDEIPHSVAIEILNVERREKGKDKFDINIYVERDSQKG 240 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K I EA++EI E++ P+ L L+VKV++DW Sbjct: 241 IIIGKGGRLLKEIGEEARREIEELIGVPIFLTLWVKVKEDW 281 >gi|89891790|ref|ZP_01203292.1| GTP-binding protein [Flavobacteria bacterium BBFL7] gi|89515945|gb|EAS18610.1| GTP-binding protein [Flavobacteria bacterium BBFL7] Length = 300 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 158/284 (55%), Gaps = 4/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+N VG ++SI+T K QTTR + GIV+ ++ QIV DTPGI Sbjct: 8 KAGFVNIVGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGIVNGEDFQIVLSDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + M+ + + AD + +V+ +ELK + K + +I+++NK Sbjct: 68 IKPAYKLQESMMEFVKNAFEDADCILYMVELGEKELKNEAFE--KRLTYAEVPVIVLINK 125 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + +L E E + + F +SA + G ++ + LP +P Y D ++ Sbjct: 126 IDKGQASQLEEAVEHWKVRLPNAEIFAISALENFGVPQLMARIVEILPASPAFYPKDALT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F E REK+ +H KEIPYS + TE++ E +D I IR VI VER +QK I+ Sbjct: 186 DKPERFFVNESIREKILIHYKKEIPYSVEIDTEEFFEDED-IIRIRSVIMVERETQKGII 244 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G G IK + EA+K++ + + VH+ L+VKV K+W + K Sbjct: 245 IGHKGAAIKRVGTEARKDLQKFFGKQVHIELYVKVNKNWRSNEK 288 >gi|312880030|ref|ZP_07739830.1| GTP-binding protein Era [Aminomonas paucivorans DSM 12260] gi|310783321|gb|EFQ23719.1| GTP-binding protein Era [Aminomonas paucivorans DSM 12260] Length = 308 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/287 (36%), Positives = 159/287 (55%), Gaps = 12/287 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSGCVAL+G N GKS+L N VG K++ V+ K QTTR +VRGIV E+QIV +DTPG+ Sbjct: 10 RSGCVALLGRPNVGKSSLANALVGVKIAAVSPKAQTTRQVVRGIVQTPEAQIVLVDTPGV 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLILI 136 + + MIR ++ +C +V++ + L I + ++E AKR + L+ Sbjct: 70 HEPRHELGRFMIRQIREALEEVVGICFLVEATDQRLSSLDRRILEWIRE-AKRPT--ALV 126 Query: 137 LNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D +K PE L + + E+ +SAT+G D +L + S LP + ++ Sbjct: 127 VNKVDLLKSPEALWKVVALYQDAYPFEEIIPLSATRGSNLDVLLERMTSWLPESEPLFPE 186 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW---EEKKDGSIL-IRQVIYVE 251 D + D EI REK+FL +E+P+S V+ E + +E D L IR I VE Sbjct: 187 DLLMDRTERFLAGEIIREKVFLETEQEVPHSVAVLVESFKSPDEYPDRKRLSIRASIVVE 246 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + QK I++G G I+ I L A++E+ PV+L L+VKV+ W Sbjct: 247 KEGQKIILIGSQGAKIRQIRLAAEEELESTFGHPVNLDLWVKVRPHW 293 >gi|320106113|ref|YP_004181703.1| GTP-binding protein Era [Terriglobus saanensis SP1PR4] gi|319924634|gb|ADV81709.1| GTP-binding protein Era [Terriglobus saanensis SP1PR4] Length = 349 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 111/315 (35%), Positives = 162/315 (51%), Gaps = 41/315 (13%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV------------SEK 68 RSG V++VG NAGKSTL+N +G K++IVTHK QTTR+ + G++ Sbjct: 4 RSGFVSIVGRPNAGKSTLLNALLGEKIAIVTHKPQTTRNRILGVLELPIRKKAAKDPGRG 63 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD------ 121 +Q+V +DTPG+ K M++ + ++ D+V +VD +HR + D Sbjct: 64 AAQVVLVDTPGVHKPSSHLDKRMMQEVYDALESRDVVLFIVDATHRLPAESKSDKPFTRD 123 Query: 122 --------------LLKEIAKRSSRLILILNKIDCVKPERLLEQ-AEIANKLVFIEKTFM 166 LLK + S ++L+LNKID V LL A + K F E Sbjct: 124 RKAMSAEEDTFALSLLKNV---DSPVLLVLNKIDSVPRAELLPLIAHWSEKYNFAE-VIP 179 Query: 167 VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYS 226 +SA K G + +L+ + LP + DQ++D P AE+ REK+ + +E+PY+ Sbjct: 180 ISAKKKDGLEVLLDAVVKRLPEGQRYFPKDQLTDQPERFLAAELIREKILMFTGEEVPYA 239 Query: 227 SCVVTEKWEEKKDGS---ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILE 283 S VV E WEE K + I IYVER QK I++G+ G +K I A+KEI ++ Sbjct: 240 SAVVVEAWEEAKSKTNPLTKISAAIYVERTGQKAIVIGRAGAMLKQIGTAARKEIESLVG 299 Query: 284 QPVHLILFVKVQKDW 298 V L LFVKV+ DW Sbjct: 300 TRVFLELFVKVKDDW 314 >gi|161612650|ref|YP_001586615.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189037666|sp|A9N1T2|ERA_SALPB RecName: Full=GTPase Era gi|161362014|gb|ABX65782.1| hypothetical protein SPAB_00346 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 301 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/291 (35%), Positives = 162/291 (55%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKTYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V K + L +AN++ F++ +SA G D + + LP A + Sbjct: 123 VNKVDNVQEKADLLPHLQFLANQMNFLD-IVPISAETGMNVDTIAGIVRKHLPEAIHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L E+PYS V E++ + G I +I VER Sbjct: 182 EDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILVEREG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|311278501|ref|YP_003940732.1| GTP-binding protein Era [Enterobacter cloacae SCF1] gi|308747696|gb|ADO47448.1| GTP-binding protein Era [Enterobacter cloacae SCF1] Length = 301 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 163/290 (56%), Gaps = 13/290 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E E Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM + + S+I ++V VV+ R + +L ++ + + +IL +NK+D Sbjct: 69 EEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVD 127 Query: 142 CVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 V+ E+A++ L F+ + F+ +SA G D + + LP A + Sbjct: 128 NVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPE 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D +EI REKL L E+PYS V E++ + G I +I VER Q Sbjct: 183 DYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILVEREGQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 KK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 243 KKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|116626742|ref|YP_828898.1| GTP-binding protein Era [Candidatus Solibacter usitatus Ellin6076] gi|116229904|gb|ABJ88613.1| GTP-binding protein Era [Candidatus Solibacter usitatus Ellin6076] Length = 304 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 157/280 (56%), Gaps = 4/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+L+G NAGKSTL+N VG KV+IV K QTTR+ ++G+++ E+QIVF DTPGI Sbjct: 6 RSGFVSLIGRPNAGKSTLLNALVGQKVAIVADKPQTTRTSIQGVLTLPEAQIVFADTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-SSRLILILNK 139 A +K ++ ++ D++ V D+ R+ + + +IA+R + ++L+LNK Sbjct: 66 HKADTPLNKRLMDTVRGALEERDLLLFVADATRKFNEDDRRAI-DIARRHKTPVVLVLNK 124 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID +K + LL E + + VS+ K G D + + LP+ P + D + Sbjct: 125 IDLLKDKAHLLPLIEEYKAVFEFTEYVPVSSVKKIGLDQLRAVILKYLPVGPAYFPEDYV 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P AE+ REK+ L +E+P++ V ++WEE + I I++ER QK I Sbjct: 185 TDQPERFLAAELIREKVLLATRQEVPHAVAVTVDRWEETPKIT-RIYATIHLERDGQKAI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++G G +K I +A+ E+ + E ++L L V VQ W Sbjct: 244 VIGSGGSMLKLIGTQARHEMERLFEAKIYLDLHVHVQPGW 283 >gi|146312694|ref|YP_001177768.1| GTP-binding protein Era [Enterobacter sp. 638] gi|189037648|sp|A4WDD7|ERA_ENT38 RecName: Full=GTPase Era gi|145319570|gb|ABP61717.1| GTP-binding protein Era [Enterobacter sp. 638] Length = 301 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 165/296 (55%), Gaps = 13/296 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ S G +A+VG N GKSTL+N +G K+SI + K QTTR + GI +E E Q +++D Sbjct: 3 EEKSYCGFIAIVGRPNVGKSTLLNTLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM + + S+I +++ VV+ R + +L ++ + +IL Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSIGDVELIIFVVEGTR-WTADDEMVLNKLRDGRAPVIL 121 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLA 189 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 122 AVNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPLSAESGMNVDTIAGIVRKHLPEA 176 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 + D I+D +EI REKL L E+PYS V E+++ + G I +I Sbjct: 177 IHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFQTNERGGYDINGLIL 236 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA+K++ ++ E PVHL L+VKV+ W D + Sbjct: 237 VEREGQKKMVIGNKGSKIKTIGIEARKDMQDMFEAPVHLELWVKVKSGWADDERAL 292 >gi|225010005|ref|ZP_03700477.1| GTP-binding protein Era [Flavobacteria bacterium MS024-3C] gi|225005484|gb|EEG43434.1| GTP-binding protein Era [Flavobacteria bacterium MS024-3C] Length = 295 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 155/279 (55%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIV+ ++ Q++ DTPGI Sbjct: 5 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGEDFQMILSDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ S + ADI+ +V+ + LK + K++ ++L+LNK Sbjct: 65 IKPAYELQASMMDFVKSAFEDADILVYMVELGEKTLKDEL--FFKKLQGSKIPVLLLLNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D + L EQ + + + +SA +V L +P AP Y DQ++ Sbjct: 123 MDISEQSILEEQIAYWQEQLPNAEIHPISALHNFNVKEVFLRLVELMPAAPPYYPKDQLT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F E REK+ H KEIPY+ + TE++ E D I +R VI VER SQK I+ Sbjct: 183 DKPERFFVNETIREKILQHYKKEIPYAVEIETEEFLE-DDDIIRMRAVIMVERDSQKGII 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G +K + +EA+K++ + ++ VH+ L+VKV K+W Sbjct: 242 IGHKGAALKRVGMEARKDLEKFFDKQVHIELYVKVNKNW 280 >gi|228472569|ref|ZP_04057329.1| GTP-binding protein Era [Capnocytophaga gingivalis ATCC 33624] gi|228275982|gb|EEK14738.1| GTP-binding protein Era [Capnocytophaga gingivalis ATCC 33624] Length = 293 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 156/282 (55%), Gaps = 4/282 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N VG ++SI+T K QTTR + GIVS + Q+VF DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLLNALVGERLSIITSKAQTTRHRIFGIVSGDDFQVVFSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ + ADI+ +V+ +ELK D ++I + +++++NK Sbjct: 64 IKPAYQLQNSMMDFVKDAFEDADILIYMVEIGEKELKD--ADFFRKINQAKVPVLVLINK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID E + + + V + + +SA + + + + LP++P Y DQ++ Sbjct: 122 IDRSDEETVKQAVAYWQQQVPKGEIYAISALENFNVAPLFHRILELLPVSPAFYPKDQLT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F E REK+ L+ KE+PY+ V TE + E D I IR +I VER SQK I+ Sbjct: 182 DKPERFFVNETIREKILLNYKKEVPYAVEVETETFSE-TDEIIRIRSIIMVERDSQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G G+ +K + +A+ ++ + + +HL L+VKV K+W D Sbjct: 241 IGHRGEALKRVGTQARYDLEKFFGKQIHLELYVKVNKNWRSD 282 >gi|239501067|ref|ZP_04660377.1| GTP-binding protein Era [Acinetobacter baumannii AB900] Length = 342 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/311 (33%), Positives = 170/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+H+ + N +L+++ Sbjct: 85 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQ-NDDLVLEKL 143 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D +R +L + KL+ + VSA +G + + + Sbjct: 144 KNADMPVILVINKADTFGDKREILPLIQERAKLMNFAEIIPVSALRGANLEHLSETIEKY 203 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 204 LPYQPPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKT 263 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+RP QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 264 GRLKPACTYIDATIFVDRPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKV 323 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 324 KGGWSDDERAL 334 >gi|126652809|ref|ZP_01724954.1| Era [Bacillus sp. B14905] gi|126590345|gb|EAZ84465.1| Era [Bacillus sp. B14905] Length = 271 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 155/258 (60%), Gaps = 2/258 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKST +NR +G K++I++ K QTTR+ V+G+++ +SQ++F+DTPGI Sbjct: 9 KSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTSTDSQMIFIDTPGI 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ +T++ D++ +V++ ++L +L+ +A S+ + L++NKI Sbjct: 69 HKPKHKLGDFMLKVAKNTLREVDVILFMVNAEQKLGKGDEFILEMLAGNSTPVFLVINKI 128 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + P+ LL E + + +SA +G+ + +L+ L LP P Y ADQ++D Sbjct: 129 DQIHPDELLGIIESYKERYEFAEIIPISALQGNNVESLLDTLSKYLPDGPQYYPADQVTD 188 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--WEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +EIP+S VV +K +E+ + I + I VER SQK I Sbjct: 189 HPERFIISELIREKVLHLTREEIPHSIAVVIDKIRRDEENNDKIHVSATIMVERDSQKGI 248 Query: 259 MLGKNGQNIKTISLEAKK 276 ++GK G +K + A++ Sbjct: 249 VIGKRGALLKEVGTRARR 266 >gi|171780162|ref|ZP_02921066.1| hypothetical protein STRINF_01950 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281510|gb|EDT46945.1| hypothetical protein STRINF_01950 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 298 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/279 (33%), Positives = 160/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + + +++ + + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIIERLKAANIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ + +LN L L + DQI+D Sbjct: 123 DKVHPDQLLEQIDDFRSQMDFKEIVPISALQGNNVEKLLNILKDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE-EKKDGSILIRQVIYVERPSQKKIM 259 P +E+ REK+ +E+P+S V+ + + + + + IR I VER SQK I+ Sbjct: 183 HPERFLVSEMIREKILKLTEQEVPHSVAVIVDSMKRDPETDKVHIRATIMVERDSQKGII 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 243 IGKKGAMLKKIGTMARRDIEIMLGDKVYLETWVKVKKNW 281 >gi|118586863|ref|ZP_01544297.1| GTP-binding protein Era [Oenococcus oeni ATCC BAA-1163] gi|118432695|gb|EAV39427.1| GTP-binding protein Era [Oenococcus oeni ATCC BAA-1163] Length = 309 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/301 (33%), Positives = 174/301 (57%), Gaps = 8/301 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 ++ + + +SG VA++G N GKSTL+N +G KV+I++ K QTTR+ + GI + +E+Q+ Sbjct: 2 ENILDNEYKSGFVAIIGRPNVGKSTLLNYIIGQKVAIISSKAQTTRNKIAGIYTTEEAQV 61 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSS 131 VFLDTPGI +S + M + S+ + AD V VVD+ + + +++ + K +++ Sbjct: 62 VFLDTPGIHKPYNSLDEYMEKASFGALNEADAVWFVVDATEKRGGGDNFIIERLKKIKNT 121 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 + L++NKID +K + L QA + + ++ + + +SA G + +++ + L Sbjct: 122 PIYLLVNKIDLIKKKNDLFQAISSYTVDSLDWSEVYPISAKSGEQVNALVDDVIEKLHPG 181 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG---SILIRQ 246 P +S +QI+D P AE+ REK+ +E+P+S VV + KKDG + I+ Sbjct: 182 PQYFSKEQITDHPERFLVAELIREKILQLTEQEVPHSIAVVIDSM--KKDGVNEKLHIQA 239 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCP 306 I VER SQK I++GK G IK I A+K+I +L + V+L +VKV+ W P+ Sbjct: 240 SIVVERSSQKNIIIGKQGNMIKRIGQLARKDIENLLGERVYLETWVKVEARWRERPQALQ 299 Query: 307 Q 307 + Sbjct: 300 E 300 >gi|16130491|ref|NP_417061.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K-12 substr. MG1655] gi|89109372|ref|AP_003152.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K-12 substr. W3110] gi|157162045|ref|YP_001459363.1| GTP-binding protein Era [Escherichia coli HS] gi|170019151|ref|YP_001724105.1| GTP-binding protein Era [Escherichia coli ATCC 8739] gi|170082175|ref|YP_001731495.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K-12 substr. DH10B] gi|188492753|ref|ZP_03000023.1| GTP-binding protein Era [Escherichia coli 53638] gi|194437653|ref|ZP_03069749.1| GTP-binding protein Era [Escherichia coli 101-1] gi|238901731|ref|YP_002927527.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli BW2952] gi|253772535|ref|YP_003035366.1| GTP-binding protein Era [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162541|ref|YP_003045649.1| GTP-binding protein Era [Escherichia coli B str. REL606] gi|256021748|ref|ZP_05435613.1| GTP-binding protein Era [Escherichia sp. 4_1_40B] gi|293415835|ref|ZP_06658478.1| GTP-binding protein Era [Escherichia coli B185] gi|297516305|ref|ZP_06934691.1| GTP-binding protein Era [Escherichia coli OP50] gi|300904250|ref|ZP_07122109.1| GTP-binding protein Era [Escherichia coli MS 84-1] gi|300920734|ref|ZP_07137140.1| GTP-binding protein Era [Escherichia coli MS 115-1] gi|300927692|ref|ZP_07143260.1| GTP-binding protein Era [Escherichia coli MS 187-1] gi|300951716|ref|ZP_07165535.1| GTP-binding protein Era [Escherichia coli MS 116-1] gi|300958793|ref|ZP_07170905.1| GTP-binding protein Era [Escherichia coli MS 175-1] gi|301022060|ref|ZP_07185987.1| GTP-binding protein Era [Escherichia coli MS 196-1] gi|301302933|ref|ZP_07209061.1| GTP-binding protein Era [Escherichia coli MS 124-1] gi|301648330|ref|ZP_07248070.1| GTP-binding protein Era [Escherichia coli MS 146-1] gi|307139202|ref|ZP_07498558.1| GTP-binding protein Era [Escherichia coli H736] gi|312973188|ref|ZP_07787360.1| GTP-binding protein Era [Escherichia coli 1827-70] gi|331643190|ref|ZP_08344325.1| GTP-binding protein Era [Escherichia coli H736] gi|331654028|ref|ZP_08355029.1| GTP-binding protein Era [Escherichia coli M718] gi|462020|sp|P06616|ERA_ECOLI RecName: Full=GTPase Era; Short=ERA; AltName: Full=GTP-binding protein Era gi|189037270|sp|A8A376|ERA_ECOHS RecName: Full=GTPase Era gi|189037272|sp|B1IVR1|ERA_ECOLC RecName: Full=GTPase Era gi|226741210|sp|B1XB40|ERA_ECODH RecName: Full=GTPase Era gi|259645943|sp|C4ZYI9|ERA_ECOBW RecName: Full=GTPase Era gi|5822055|pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era gi|5822056|pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era gi|67464189|pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor Domain Of The 16s Rrna Within The Thermus Thermophilus 30s Subunit. gi|256599905|pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp gi|256599906|pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp gi|416295|gb|AAA03242.1| era [Escherichia coli] gi|987641|dbj|BAA10913.1| GTP binding protein [Escherichia coli K-12] gi|998396|gb|AAB34156.1| GTPase, Era [Escherichia coli, Peptide Mutant, 301 aa] gi|1033155|gb|AAA79828.1| GTP-binding protein [Escherichia coli str. K-12 substr. MG1655] gi|1788919|gb|AAC75619.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K-12 substr. MG1655] gi|85675457|dbj|BAE76742.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K12 substr. W3110] gi|157067725|gb|ABV06980.1| GTP-binding protein Era [Escherichia coli HS] gi|169754079|gb|ACA76778.1| GTP-binding protein Era [Escherichia coli ATCC 8739] gi|169890010|gb|ACB03717.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K-12 substr. DH10B] gi|188487952|gb|EDU63055.1| GTP-binding protein Era [Escherichia coli 53638] gi|194423459|gb|EDX39450.1| GTP-binding protein Era [Escherichia coli 101-1] gi|238861749|gb|ACR63747.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli BW2952] gi|242378167|emb|CAQ32941.1| GTP-binding protein [Escherichia coli BL21(DE3)] gi|253323579|gb|ACT28181.1| GTP-binding protein Era [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974442|gb|ACT40113.1| GTP-binding protein Era [Escherichia coli B str. REL606] gi|253978609|gb|ACT44279.1| GTP-binding protein Era [Escherichia coli BL21(DE3)] gi|260448354|gb|ACX38776.1| GTP-binding protein Era [Escherichia coli DH1] gi|291433483|gb|EFF06462.1| GTP-binding protein Era [Escherichia coli B185] gi|299881365|gb|EFI89576.1| GTP-binding protein Era [Escherichia coli MS 196-1] gi|300314541|gb|EFJ64325.1| GTP-binding protein Era [Escherichia coli MS 175-1] gi|300403783|gb|EFJ87321.1| GTP-binding protein Era [Escherichia coli MS 84-1] gi|300412305|gb|EFJ95615.1| GTP-binding protein Era [Escherichia coli MS 115-1] gi|300449000|gb|EFK12620.1| GTP-binding protein Era [Escherichia coli MS 116-1] gi|300464245|gb|EFK27738.1| GTP-binding protein Era [Escherichia coli MS 187-1] gi|300841868|gb|EFK69628.1| GTP-binding protein Era [Escherichia coli MS 124-1] gi|301073606|gb|EFK88412.1| GTP-binding protein Era [Escherichia coli MS 146-1] gi|309702952|emb|CBJ02283.1| GTP-binding protein [Escherichia coli ETEC H10407] gi|310331783|gb|EFP99018.1| GTP-binding protein Era [Escherichia coli 1827-70] gi|315137190|dbj|BAJ44349.1| GTP-binding protein Era [Escherichia coli DH1] gi|315256594|gb|EFU36562.1| GTP-binding protein Era [Escherichia coli MS 85-1] gi|315615828|gb|EFU96460.1| GTP-binding protein Era [Escherichia coli 3431] gi|323936306|gb|EGB32597.1| GTP-binding protein Era [Escherichia coli E1520] gi|323941171|gb|EGB37356.1| GTP-binding protein Era [Escherichia coli E482] gi|323961181|gb|EGB56794.1| GTP-binding protein Era [Escherichia coli H489] gi|323971108|gb|EGB66355.1| GTP-binding protein Era [Escherichia coli TA007] gi|331039988|gb|EGI12208.1| GTP-binding protein Era [Escherichia coli H736] gi|331048877|gb|EGI20953.1| GTP-binding protein Era [Escherichia coli M718] gi|332344441|gb|AEE57775.1| GTP-binding protein [Escherichia coli UMNK88] Length = 301 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 164/295 (55%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|325496354|gb|EGC94213.1| GTP-binding protein Era [Escherichia fergusonii ECD227] Length = 301 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 162/292 (55%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 NDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVIL 121 Query: 136 ILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D V K + L +A+++ FI+ +SA G D + + LP A + Sbjct: 122 AVNKVDNVQEKADLLPHLQFLASQMNFID-IVPISAETGLNVDTIAAIVRKHLPEATHHF 180 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D I+D +EI REKL L E+PYS V E++ + G I +I VER Sbjct: 181 PEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVERE 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 241 GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|67464182|pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 292 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 164/295 (55%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 1 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 60 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + + +IL Sbjct: 61 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 119 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 120 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 174 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 175 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILV 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 235 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 289 >gi|116491019|ref|YP_810563.1| GTPase [Oenococcus oeni PSU-1] gi|290890500|ref|ZP_06553575.1| hypothetical protein AWRIB429_0965 [Oenococcus oeni AWRIB429] gi|116091744|gb|ABJ56898.1| GTPase [Oenococcus oeni PSU-1] gi|290479896|gb|EFD88545.1| hypothetical protein AWRIB429_0965 [Oenococcus oeni AWRIB429] Length = 305 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 172/297 (57%), Gaps = 9/297 (3%) Query: 18 DNS-RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 DN +SG VA++G N GKSTL+N +G KV+I++ K QTTR+ + GI + +E+Q+VFLD Sbjct: 2 DNEYKSGFVAIIGRPNVGKSTLLNYIIGQKVAIISSKAQTTRNKIAGIYTTEEAQVVFLD 61 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLIL 135 TPGI +S + M + S+ + AD V VVD+ + + +++ + K +++ + L Sbjct: 62 TPGIHKPYNSLDEYMEKASFGALNEADAVWFVVDATEKRGGGDNFIIERLKKIKNTPIYL 121 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++NKID +K + L QA + + ++ + + +SA G + +++ + L P + Sbjct: 122 LVNKIDLIKKKNDLFQAISSYTVDSLDWSEVYPISAKSGEQVNALVDDVIEKLHPGPQYF 181 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG---SILIRQVIYV 250 S +QI+D P AE+ REK+ +E+P+S VV + KKDG + I+ I V Sbjct: 182 SKEQITDHPERFLVAELIREKILQLTEQEVPHSIAVVIDSM--KKDGVNEKLHIQASIVV 239 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 ER SQK I++GK G IK I A+K+I +L + V+L +VKV+ W P+ + Sbjct: 240 ERSSQKNIIIGKQGNMIKRIGQLARKDIENLLGERVYLETWVKVEARWRERPQALQE 296 >gi|302869290|ref|YP_003837927.1| GTP-binding protein Era [Micromonospora aurantiaca ATCC 27029] gi|315504235|ref|YP_004083122.1| gtp-binding protein era [Micromonospora sp. L5] gi|302572149|gb|ADL48351.1| GTP-binding protein Era [Micromonospora aurantiaca ATCC 27029] gi|315410854|gb|ADU08971.1| GTP-binding protein Era [Micromonospora sp. L5] Length = 298 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 157/287 (54%), Gaps = 9/287 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG K++I ++K QTTR I+R ++ +SQ+V +DTPG+ Sbjct: 10 RAGFACFVGRPNAGKSTLTNAIVGTKIAITSNKPQTTRHIIRAVLHRPDSQLVLVDTPGL 69 Query: 81 FNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++R +WS + D++ L V ++ + + E+A + ++ ++ Sbjct: 70 HRPRTLLGERLNDLVRETWSEV---DVIGLCVPANEPVGRGDRFITGELASLKATVLAVV 126 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V +RL EQ ++L VSA GH D +++ + LP +P +Y D Sbjct: 127 TKTDLVDKKRLAEQLLAVSELGEFADVVPVSAVSGHQVDTLVDVMTGYLPPSPQLYPDDM 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D P AE+ RE + E+P+S VV E E +G++ I +YVER SQK Sbjct: 187 LTDDPEQVLVAELVREAALEGVRDELPHSIAVVVE--EMIPEGNLTKIYADVYVERSSQK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++G G +K + A+++I E+L V+L L V+V KDW DPK Sbjct: 245 AIVIGHRGSRLKHVGTTARRQIEELLGTRVYLDLHVRVAKDWQRDPK 291 >gi|119356257|ref|YP_910901.1| GTP-binding protein Era [Chlorobium phaeobacteroides DSM 266] gi|119353606|gb|ABL64477.1| GTP-binding protein Era [Chlorobium phaeobacteroides DSM 266] Length = 305 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 104/285 (36%), Positives = 160/285 (56%), Gaps = 9/285 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G ++GA NAGKSTL+N+ + K+SIVT K QTTR + GI + + QI+FLDTPGI Sbjct: 9 GFAVIIGAPNAGKSTLLNKLLDYKLSIVTPKPQTTRKRITGIYHKDQCQIIFLDTPGIMK 68 Query: 83 AKDSYHKLMIRLSWSTIKHADIV-CLVVDSHRELKVNI---HDLLKEIAKRSSR-LILIL 137 + H+ M+ ++ +T+K AD+V L+ S + V++ DL S + +I +L Sbjct: 69 PQQKLHESMLEITRATLKDADVVLALLPYSRQSGSVDLEFTEDLFSSWLNPSGKPVIAVL 128 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D V E + + +SA G+ + +++ L LPL +Y + Sbjct: 129 NKSDLVSAEAKRTCESVIQNSFHPKAVLSISAQLGNNIEGLISALKPFLPLKEPLYPEET 188 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LIRQVIYVERP 253 +S P F EI REK+FL EIPY+S V+ ++++E+ + LIR I VER Sbjct: 189 LSTDPERLFVTEIIREKIFLLYGNEIPYASEVIIDEFKEQHENDPSRKDLIRCSIIVERD 248 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK+I++G G +K + A+ +I E+L +PV L LF+KV+ DW Sbjct: 249 SQKQILIGSKGAALKKLGQAARLDIEELLGRPVFLELFIKVRNDW 293 >gi|72161252|ref|YP_288909.1| GTP-binding protein Era [Thermobifida fusca YX] gi|71914984|gb|AAZ54886.1| Small GTP-binding protein domain [Thermobifida fusca YX] Length = 315 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/295 (32%), Positives = 162/295 (54%), Gaps = 14/295 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q+ RSG V +G N GKSTL+N VG KV+I + + QTTR +RGIV + +Q++ +D Sbjct: 16 QEGFRSGFVCFIGRPNVGKSTLMNALVGRKVAITSDRPQTTRRTIRGIVHRENAQLIIVD 75 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLIL 135 TPG+ + + + L ST+ D++ + + + + +E+A ++ + ++ Sbjct: 76 TPGLHKPRTLLGERLDSLVRSTLVEVDVIGFCIPADEPIGRGDTYIARELAQQKETPVVA 135 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEK------TFMVSATKGHGCDDVLNYLCSTLPLA 189 I+ K D + +A+IA +LV + + VSA G D++++ LCS LP Sbjct: 136 IVTKTDKAR------RAQIAQQLVAVSELGDWADIVPVSAASGFQLDELVDVLCSHLPEG 189 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVI 248 P +Y ++D P AE+ RE + +E+P+S VV ++ ++D ++ I + Sbjct: 190 PPLYPDGDLTDEPEEILVAELVREAALAGVREELPHSIAVVVDEMVPREDRDLIEIYASL 249 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 YVERPSQK I++G G ++ + A+++I +L V+L L V+V KDW DPK Sbjct: 250 YVERPSQKAIVIGTKGSRLREVGTRARRQIEALLGSRVYLDLRVRVAKDWQSDPK 304 >gi|325106043|ref|YP_004275697.1| GTP-binding protein Era [Pedobacter saltans DSM 12145] gi|324974891|gb|ADY53875.1| GTP-binding protein Era [Pedobacter saltans DSM 12145] Length = 292 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 160/278 (57%), Gaps = 3/278 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V++VG NAGKSTL+N VG K++I+T K QTTR + GIV+E++ QIVF DTPGI Sbjct: 4 KAGFVSIVGKPNAGKSTLMNTLVGEKMAIITSKAQTTRHRIIGIVNEEDYQIVFSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ ++ ADI+ V D + K + D+L +I +++L++++NKI Sbjct: 64 IKPAYKLQESMMDAVQGSLVDADILLFVTDINE--KHDEQDVLDKIKGSTAKLLVLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E+ + + +SA + + ++ ++ LP P Y D+++ Sbjct: 122 DESTQEKVEEKINYWRDKLNPDGIVGISALHNYNVEQIMGFIKDNLPEHPPYYDKDELTT 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 F +E+ REK+F KEIPYS+ V+ ++E K+ I I + VER SQK I++ Sbjct: 182 RSERFFVSEMIREKIFKFYKKEIPYSTEVLVTSFKESKN-LIKISAEVVVERESQKNILI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K I A++++ + L++ V L +FVKV DW Sbjct: 241 GTGGSMLKKIGTYARQDMEDFLQKKVFLEIFVKVIPDW 278 >gi|332826860|gb|EGJ99660.1| GTP-binding protein Era [Dysgonomonas gadei ATCC BAA-286] Length = 293 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 157/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N VG KVSI+T K QTTR + GIV+ + QIV+ DTPG+ Sbjct: 3 KSGFVNIVGNPNVGKSTLMNLLVGEKVSIITSKAQTTRHRILGIVNTDDYQIVYSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ + D + N + L+++ + ++L++NKI Sbjct: 63 LRPNYKLQESMLNFSVSALSDADVLLYMTDVIEKTDKN-EEFLQKVQNVDAPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L + +L+ + + +SA D V + +P +P + D ++D Sbjct: 122 DQTNQQELEKLVAQWKELLPKAEIYPISALNKFNVDTVKKRILDLIPESPPYFEKDALTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KE+PY+ V+ E+++++K+ I IR +I ER +QK I++ Sbjct: 182 RPARFFVTEIIREKILLYYQKEVPYAVEVIVEEFKDEKE-IINIRALIIAERDTQKGIII 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K ++ A+K++ + + L ++VKV+KDW Sbjct: 241 GHKGAALKKVATMARKDMERFFNKKIFLEIYVKVEKDW 278 >gi|110806511|ref|YP_690031.1| GTP-binding protein Era [Shigella flexneri 5 str. 8401] gi|122957275|sp|Q0T1T9|ERA_SHIF8 RecName: Full=GTPase Era gi|110616059|gb|ABF04726.1| GTP-binding protein [Shigella flexneri 5 str. 8401] Length = 301 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 164/294 (55%), Gaps = 13/294 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDCSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERA 291 >gi|311104758|ref|YP_003977611.1| GTP-binding protein Era [Achromobacter xylosoxidans A8] gi|310759447|gb|ADP14896.1| GTP-binding protein Era [Achromobacter xylosoxidans A8] Length = 296 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 163/291 (56%), Gaps = 27/291 (9%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL N +G+K+SIV+ K QTTR + G+++ + Q VF+DTPG Sbjct: 7 RTGFVAIVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPG- 65 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILI 136 F + + +++M R+ + D+V VV++ + E + LL R IL+ Sbjct: 66 FQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEGDAKLLPLLPA----PERTILV 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFM---------VSATKGHGCDDVLNYLCSTLP 187 ++KID +K L F+ K VSATK D +L + S LP Sbjct: 122 VSKIDALKNRDDL--------FAFVSKIMALHPYGAVVPVSATKKQQLDQLLEEIASRLP 173 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 ++ D ++D PM AE+ REK+F + E+PY VV E+WEE G+ I Sbjct: 174 EGEAMFEEDTLTDRPMRFIAAELVREKIFRLVGDELPYGCTVVIEQWEETAKGAS-INAC 232 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + VER S K I+LG G ++K I+ EA+++IA++L++PVHL +++KV+K W Sbjct: 233 VVVERDSHKPILLGTGGMHMKRIATEARQDIAKLLDKPVHLEVYIKVRKGW 283 >gi|222152667|ref|YP_002561842.1| GTP-binding protein Era [Streptococcus uberis 0140J] gi|254783667|sp|B9DRF9|ERA_STRU0 RecName: Full=GTPase Era gi|222113478|emb|CAR41209.1| GTP-binding protein Era homolog [Streptococcus uberis 0140J] Length = 299 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 161/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EKRGKGDDMIMERLKNAKIPVILVINK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LLEQ + + ++ +SA +G+ +++ L L + DQI+ Sbjct: 123 IDKVHPDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLISLLTDNLEEGFQYFPEDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK-DGSILIRQVIYVERPSQKKI 258 D P +E+ REK+ +EIP+S VV E + + + IR I VER SQK I Sbjct: 183 DHPERFLVSEMIREKVLHLTQQEIPHSVAVVIESMKRDQVTDKVHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 243 IIGKQGSMLKKIGQMARRDIELMLGDKVYLETWVKVKKNW 282 >gi|312864794|ref|ZP_07725025.1| ribosome biogenesis GTPase Era [Streptococcus downei F0415] gi|311099921|gb|EFQ58134.1| ribosome biogenesis GTPase Era [Streptococcus downei F0415] Length = 321 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 162/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 26 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGI 85 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + E + +++ + +IL++NKI Sbjct: 86 HKPKTALGDFMVESAYSTLREVETVLFMVPADEERGKGDNMIMERLKAAKIPVILVINKI 145 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLE+ + + ++ +SA +G+ + ++ L L + DQI+D Sbjct: 146 DQVHPDQLLEKIDDFRSQMDFKEIVPISALQGNNIETLMMILKDNLEEGYQYFPEDQITD 205 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ L +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 206 HPERFLVSEMIREKVLLLTQQEVPHSVAVVIESMKRDEETD-KVHIRATIMVERDSQKGI 264 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 265 IIGKKGSMLKKIGQLARRDIELMLGDKVFLETWVKVKKNW 304 >gi|166364450|ref|YP_001656723.1| GTP-binding protein Era [Microcystis aeruginosa NIES-843] gi|166086823|dbj|BAG01531.1| GTP-binding protein ERA homolog [Microcystis aeruginosa NIES-843] Length = 318 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 156/281 (55%), Gaps = 6/281 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + ++G N GKSTL+N+ VG K++I + QTTR+ +RGIV+ + +Q++F+DTPGI Sbjct: 25 KSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTSERAQMIFVDTPGI 84 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K++++ + + I D+V VVDS L + + K + IL LNK Sbjct: 85 HKPHHELGKVLVKNAENAINSVDLVLFVVDSSNFLGSGDRYIADLLTKNQTPTILGLNKA 144 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D +R E + + + + E + + SA +G G +++ N L +L + P+ Y D Sbjct: 145 DQQPEDR--EPLDDSYRTLAAENNWPLLKFSALEGTGIEELQNLLIDSLEVGPYYYPPDL 202 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P E+ RE++ L +EIP+S VV E+ EE + I VER SQK Sbjct: 203 VTDQPERFIMGELIREQILLQTRQEIPHSVAVVIERVEETP-ALTKVFAAINVERASQKG 261 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GKNG +K I A+ I +++ V+L LFVKV+ W Sbjct: 262 IVIGKNGSMLKAIGTSARSAIQKLIAGEVYLKLFVKVEPKW 302 >gi|169795097|ref|YP_001712890.1| GTP-binding protein Era [Acinetobacter baumannii AYE] gi|213158241|ref|YP_002320292.1| GTP-binding protein Era [Acinetobacter baumannii AB0057] gi|301345823|ref|ZP_07226564.1| GTP-binding protein Era [Acinetobacter baumannii AB056] gi|301594765|ref|ZP_07239773.1| GTP-binding protein Era [Acinetobacter baumannii AB059] gi|169148024|emb|CAM85887.1| GTP-binding protein,16S rRNA-binding,ribosome-associated GTPase [Acinetobacter baumannii AYE] gi|193078015|gb|ABO12935.2| GTP-binding protein16S rRNA-binding,ribosome-associated GTPase [Acinetobacter baumannii ATCC 17978] gi|213057401|gb|ACJ42303.1| GTP-binding protein Era [Acinetobacter baumannii AB0057] Length = 342 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 103/311 (33%), Positives = 170/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+H+ + N +L+++ Sbjct: 85 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQ-NDDLVLEKL 143 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D +R +L + KL+ + VSA +G + + + Sbjct: 144 KNADMPVILVINKADTFGDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKY 203 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 204 LPYQPPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKT 263 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+RP QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 264 GRLKPACTYIDATIFVDRPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKV 323 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 324 KGGWSDDERAL 334 >gi|332851054|ref|ZP_08433163.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013150] gi|332869697|ref|ZP_08438885.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013113] gi|332730218|gb|EGJ61543.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013150] gi|332732599|gb|EGJ63832.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013113] Length = 340 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 103/311 (33%), Positives = 170/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 23 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 82 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+H+ + N +L+++ Sbjct: 83 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQ-NDDLVLEKL 141 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D +R +L + KL+ + VSA +G + + + Sbjct: 142 KNADMPVILVINKADTFGDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKY 201 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 202 LPYQPPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKT 261 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+RP QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 262 GRLKPACTYIDATIFVDRPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKV 321 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 322 KGGWSDDERAL 332 >gi|328955430|ref|YP_004372763.1| GTP-binding protein Era [Coriobacterium glomerans PW2] gi|328455754|gb|AEB06948.1| GTP-binding protein Era [Coriobacterium glomerans PW2] Length = 324 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 155/283 (54%), Gaps = 3/283 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VALVG NAGKSTL+N G K++I ++ VQTTR +R +V+ QIVF+DTPG+ Sbjct: 33 SGFVALVGRPNAGKSTLLNAIFGKKIAITSNVVQTTRRRLRAVVNRPGCQIVFVDTPGLH 92 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +DS + + + + + + D+V L VD+ + + + + +A+ S+ +L++ K D Sbjct: 93 KPQDSLGRELNKGALAELVDVDVVALTVDATKPVGSGDRWVAERVARTSAVRVLVITKAD 152 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 PE + Q L ++T VSAT+G + ++ + S LP+ P + D +D Sbjct: 153 LATPEMVASQIAAVAALCDFDETIAVSATEGFNVEALIEIVSSHLPVGPHWFPDDAGADA 212 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIML 260 AE REK +EIP++ V + DGS++ I VER SQK I++ Sbjct: 213 TDEQIVAEFVREKALRRTREEIPHAVGVACDSL--ALDGSLVRAHATILVERDSQKGILI 270 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G+ IK I +A++++ + ++ V L L V+VQ DW D + Sbjct: 271 GSGGEMIKRIGTDARRDLERLFDRKVFLALDVRVQPDWRDDGR 313 >gi|118473995|ref|YP_888765.1| GTP-binding protein Era [Mycobacterium smegmatis str. MC2 155] gi|118175282|gb|ABK76178.1| GTP-binding protein Era [Mycobacterium smegmatis str. MC2 155] Length = 301 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 160/289 (55%), Gaps = 7/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG KV+I +++ QTTR +RGIV ++ QI+ +DTPG+ Sbjct: 7 RSGFVCFVGRPNTGKSTLTNALVGQKVAITSNRPQTTRHTIRGIVHREDFQIILVDTPGL 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L T D++ + + + + I+ ++ +A R++ LI I+ Sbjct: 67 HRPRTLLGQRLNDLVKDTYSEVDVIGMCIPADEAIGPGDRWIYQQIRAVAPRTT-LIGIV 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V +R+ Q ++L+ + + VSAT G D + N L S LP P Y Sbjct: 126 TKIDKVPKDRVAAQLLAVSELMGPDAEIVPVSATSGEQLDVLTNVLVSQLPPGPAYYPDG 185 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI--RQVIYVERPS 254 +++D P AE+ RE + E+P+S VV ++ +++D LI ++YVER S Sbjct: 186 ELTDEPEEVLMAELIREAALEGVRDELPHSLAVVIDEVSQREDRDDLIDVHAILYVERDS 245 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++GK G ++ + A+K+I ++L V+L L VK+ K+W DPK Sbjct: 246 QKGIVIGKGGARLREVGTAARKQIEKLLGTKVYLDLRVKIAKNWQRDPK 294 >gi|293400673|ref|ZP_06644818.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305699|gb|EFE46943.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 301 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 158/278 (56%), Gaps = 1/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +A++G NAGKSTL+N + K++I T K QTTR+ + GI++ +++Q +F DTPGI Sbjct: 4 KSGFIAIIGRPNAGKSTLLNALLNEKIAITTPKPQTTRNNISGILTREDAQFIFTDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K K + R +++ I AD+ VVD+ + LL++I + LILNKI Sbjct: 64 HKPKHELGKTLNRNAYTAIAEADVNFWVVDATQSFGSGDEFLLEKIKQSHIPCFLILNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E+L+ + + + F VSA + +D+L L P + + +SD Sbjct: 124 DLLDKEKLIRTLQQWQERHTFAEIFPVSALQKDNLNDLLEVTKGYLEEGPKFFPDEMVSD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AEI REK+ ++E+P+S VV E+ EE ++ ++ +I VER SQK I++ Sbjct: 184 HGEQFQIAEIIREKVLYKTNEEVPHSVAVVIERKEETAT-AVFLQALIVVERTSQKAILI 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK I++I L A+KE+ E + V L L+V+V+K+W Sbjct: 243 GKQAAMIRSIRLAAQKELKEKFHKKVELELYVRVEKNW 280 >gi|218547906|ref|YP_002381697.1| GTP-binding protein Era [Escherichia fergusonii ATCC 35469] gi|226741215|sp|B7LUZ8|ERA_ESCF3 RecName: Full=GTPase Era gi|218355447|emb|CAQ88056.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia fergusonii ATCC 35469] gi|323968014|gb|EGB63426.1| GTP-binding protein Era [Escherichia coli M863] gi|323978404|gb|EGB73489.1| GTP-binding protein Era [Escherichia coli TW10509] gi|324113093|gb|EGC07069.1| GTP-binding protein Era [Escherichia fergusonii B253] gi|327252276|gb|EGE63948.1| GTP-binding protein Era [Escherichia coli STEC_7v] Length = 301 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 163/296 (55%), Gaps = 13/296 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 NDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVIL 121 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLA 189 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 122 AVNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEA 176 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 + D I+D +EI REKL L E+PYS V E++ + G I +I Sbjct: 177 THHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLIL 236 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 237 VEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|26248931|ref|NP_754971.1| GTP-binding protein Era [Escherichia coli CFT073] gi|74313128|ref|YP_311547.1| GTP-binding protein Era [Shigella sonnei Ss046] gi|82545018|ref|YP_408965.1| GTP-binding protein Era [Shigella boydii Sb227] gi|91211892|ref|YP_541878.1| GTP-binding protein Era [Escherichia coli UTI89] gi|110642728|ref|YP_670458.1| GTP-binding protein Era [Escherichia coli 536] gi|117624787|ref|YP_853700.1| GTP-binding protein Era [Escherichia coli APEC O1] gi|157157884|ref|YP_001463889.1| GTP-binding protein Era [Escherichia coli E24377A] gi|170681506|ref|YP_001744755.1| GTP-binding protein Era [Escherichia coli SMS-3-5] gi|187732790|ref|YP_001881345.1| GTP-binding protein Era [Shigella boydii CDC 3083-94] gi|191167969|ref|ZP_03029771.1| GTP-binding protein Era [Escherichia coli B7A] gi|191174026|ref|ZP_03035543.1| GTP-binding protein Era [Escherichia coli F11] gi|193064069|ref|ZP_03045154.1| GTP-binding protein Era [Escherichia coli E22] gi|193068335|ref|ZP_03049298.1| GTP-binding protein Era [Escherichia coli E110019] gi|194429262|ref|ZP_03061789.1| GTP-binding protein Era [Escherichia coli B171] gi|194432158|ref|ZP_03064447.1| GTP-binding protein Era [Shigella dysenteriae 1012] gi|209920045|ref|YP_002294129.1| GTP-binding protein Era [Escherichia coli SE11] gi|215487910|ref|YP_002330341.1| GTP-binding protein Era [Escherichia coli O127:H6 str. E2348/69] gi|218555147|ref|YP_002388060.1| GTP-binding protein Era [Escherichia coli IAI1] gi|218559487|ref|YP_002392400.1| GTP-binding protein Era [Escherichia coli S88] gi|218690682|ref|YP_002398894.1| GTP-binding protein Era [Escherichia coli ED1a] gi|218696194|ref|YP_002403861.1| GTP-binding protein Era [Escherichia coli 55989] gi|218701080|ref|YP_002408709.1| GTP-binding protein Era [Escherichia coli IAI39] gi|218706070|ref|YP_002413589.1| GTP-binding protein Era [Escherichia coli UMN026] gi|227887602|ref|ZP_04005407.1| GTP-binding protein Era [Escherichia coli 83972] gi|237705076|ref|ZP_04535557.1| GTP-binding protein era [Escherichia sp. 3_2_53FAA] gi|256017285|ref|ZP_05431150.1| GTP-binding protein Era [Shigella sp. D9] gi|260845251|ref|YP_003223029.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O103:H2 str. 12009] gi|260856660|ref|YP_003230551.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O26:H11 str. 11368] gi|260869253|ref|YP_003235655.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O111:H- str. 11128] gi|293406008|ref|ZP_06650000.1| era [Escherichia coli FVEC1412] gi|293410982|ref|ZP_06654558.1| GTP-binding protein Era [Escherichia coli B354] gi|293446920|ref|ZP_06663342.1| GTP-binding protein Era [Escherichia coli B088] gi|298381808|ref|ZP_06991407.1| GTP-binding protein Era [Escherichia coli FVEC1302] gi|300817657|ref|ZP_07097872.1| GTP-binding protein Era [Escherichia coli MS 107-1] gi|300820755|ref|ZP_07100905.1| GTP-binding protein Era [Escherichia coli MS 119-7] gi|300898319|ref|ZP_07116667.1| GTP-binding protein Era [Escherichia coli MS 198-1] gi|300927057|ref|ZP_07142809.1| GTP-binding protein Era [Escherichia coli MS 182-1] gi|300935699|ref|ZP_07150669.1| GTP-binding protein Era [Escherichia coli MS 21-1] gi|300974162|ref|ZP_07172480.1| GTP-binding protein Era [Escherichia coli MS 200-1] gi|300982270|ref|ZP_07175981.1| GTP-binding protein Era [Escherichia coli MS 45-1] gi|301024853|ref|ZP_07188490.1| GTP-binding protein Era [Escherichia coli MS 69-1] gi|301047205|ref|ZP_07194297.1| GTP-binding protein Era [Escherichia coli MS 185-1] gi|301330332|ref|ZP_07222979.1| GTP-binding protein Era [Escherichia coli MS 78-1] gi|306814370|ref|ZP_07448532.1| GTP-binding protein Era [Escherichia coli NC101] gi|307313863|ref|ZP_07593479.1| GTP-binding protein Era [Escherichia coli W] gi|309794380|ref|ZP_07688803.1| GTP-binding protein Era [Escherichia coli MS 145-7] gi|312965482|ref|ZP_07779714.1| GTP-binding protein Era [Escherichia coli 2362-75] gi|331658710|ref|ZP_08359654.1| GTP-binding protein Era [Escherichia coli TA206] gi|331664134|ref|ZP_08365044.1| GTP-binding protein Era [Escherichia coli TA143] gi|331669316|ref|ZP_08370164.1| GTP-binding protein Era [Escherichia coli TA271] gi|331674015|ref|ZP_08374778.1| GTP-binding protein Era [Escherichia coli TA280] gi|331678562|ref|ZP_08379237.1| GTP-binding protein Era [Escherichia coli H591] gi|331684216|ref|ZP_08384812.1| GTP-binding protein Era [Escherichia coli H299] gi|332278276|ref|ZP_08390689.1| GTP-binding protein era [Shigella sp. D9] gi|34222489|sp|Q8FF17|ERA_ECOL6 RecName: Full=GTPase Era gi|122422870|sp|Q1R8G7|ERA_ECOUT RecName: Full=GTPase Era gi|123048970|sp|Q0TES2|ERA_ECOL5 RecName: Full=GTPase Era gi|123558970|sp|Q31XS1|ERA_SHIBS RecName: Full=GTPase Era gi|123616464|sp|Q3YYV0|ERA_SHISS RecName: Full=GTPase Era gi|189037269|sp|A7ZQ10|ERA_ECO24 RecName: Full=GTPase Era gi|189037271|sp|A1AE96|ERA_ECOK1 RecName: Full=GTPase Era gi|226741206|sp|B7MIQ1|ERA_ECO45 RecName: Full=GTPase Era gi|226741208|sp|B7NRL9|ERA_ECO7I RecName: Full=GTPase Era gi|226741209|sp|B7M8H9|ERA_ECO8A RecName: Full=GTPase Era gi|226741211|sp|B7N6F4|ERA_ECOLU RecName: Full=GTPase Era gi|226741212|sp|B6I5E0|ERA_ECOSE RecName: Full=GTPase Era gi|226741213|sp|B1LP79|ERA_ECOSM RecName: Full=GTPase Era gi|226741236|sp|B2TXX9|ERA_SHIB3 RecName: Full=GTPase Era gi|254783654|sp|B7UH06|ERA_ECO27 RecName: Full=GTPase Era gi|254783655|sp|B7LDF9|ERA_ECO55 RecName: Full=GTPase Era gi|254783656|sp|B7MYJ7|ERA_ECO81 RecName: Full=GTPase Era gi|26109337|gb|AAN81539.1|AE016764_221 GTP-binding protein era [Escherichia coli CFT073] gi|73856605|gb|AAZ89312.1| GTP-binding protein [Shigella sonnei Ss046] gi|81246429|gb|ABB67137.1| GTP-binding protein [Shigella boydii Sb227] gi|91073466|gb|ABE08347.1| GTP-binding protein era [Escherichia coli UTI89] gi|110344320|gb|ABG70557.1| GTP-binding protein Era [Escherichia coli 536] gi|115513911|gb|ABJ01986.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli APEC O1] gi|157079914|gb|ABV19622.1| GTP-binding protein Era [Escherichia coli E24377A] gi|170519224|gb|ACB17402.1| GTP-binding protein Era [Escherichia coli SMS-3-5] gi|187429782|gb|ACD09056.1| GTP-binding protein Era [Shigella boydii CDC 3083-94] gi|190901976|gb|EDV61723.1| GTP-binding protein Era [Escherichia coli B7A] gi|190905717|gb|EDV65339.1| GTP-binding protein Era [Escherichia coli F11] gi|192929304|gb|EDV82913.1| GTP-binding protein Era [Escherichia coli E22] gi|192958287|gb|EDV88727.1| GTP-binding protein Era [Escherichia coli E110019] gi|194412670|gb|EDX28965.1| GTP-binding protein Era [Escherichia coli B171] gi|194419687|gb|EDX35767.1| GTP-binding protein Era [Shigella dysenteriae 1012] gi|209913304|dbj|BAG78378.1| GTP-binding protein [Escherichia coli SE11] gi|215265982|emb|CAS10391.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O127:H6 str. E2348/69] gi|218352926|emb|CAU98725.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli 55989] gi|218361915|emb|CAQ99515.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli IAI1] gi|218366256|emb|CAR04003.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli S88] gi|218371066|emb|CAR18893.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli IAI39] gi|218428246|emb|CAR09163.2| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli ED1a] gi|218433167|emb|CAR14063.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli UMN026] gi|222034271|emb|CAP77012.1| GTP-binding protein era [Escherichia coli LF82] gi|226901442|gb|EEH87701.1| GTP-binding protein era [Escherichia sp. 3_2_53FAA] gi|227835952|gb|EEJ46418.1| GTP-binding protein Era [Escherichia coli 83972] gi|257755309|dbj|BAI26811.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O26:H11 str. 11368] gi|257760398|dbj|BAI31895.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O103:H2 str. 12009] gi|257765609|dbj|BAI37104.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O111:H- str. 11128] gi|281179615|dbj|BAI55945.1| GTP-binding protein [Escherichia coli SE15] gi|284922516|emb|CBG35603.1| GTP-binding protein [Escherichia coli 042] gi|291323750|gb|EFE63178.1| GTP-binding protein Era [Escherichia coli B088] gi|291428216|gb|EFF01243.1| era [Escherichia coli FVEC1412] gi|291471450|gb|EFF13934.1| GTP-binding protein Era [Escherichia coli B354] gi|294490299|gb|ADE89055.1| GTP-binding protein Era [Escherichia coli IHE3034] gi|298279250|gb|EFI20764.1| GTP-binding protein Era [Escherichia coli FVEC1302] gi|300300882|gb|EFJ57267.1| GTP-binding protein Era [Escherichia coli MS 185-1] gi|300308901|gb|EFJ63421.1| GTP-binding protein Era [Escherichia coli MS 200-1] gi|300357981|gb|EFJ73851.1| GTP-binding protein Era [Escherichia coli MS 198-1] gi|300396384|gb|EFJ79922.1| GTP-binding protein Era [Escherichia coli MS 69-1] gi|300408824|gb|EFJ92362.1| GTP-binding protein Era [Escherichia coli MS 45-1] gi|300416941|gb|EFK00252.1| GTP-binding protein Era [Escherichia coli MS 182-1] gi|300459133|gb|EFK22626.1| GTP-binding protein Era [Escherichia coli MS 21-1] gi|300526508|gb|EFK47577.1| GTP-binding protein Era [Escherichia coli MS 119-7] gi|300529645|gb|EFK50707.1| GTP-binding protein Era [Escherichia coli MS 107-1] gi|300843666|gb|EFK71426.1| GTP-binding protein Era [Escherichia coli MS 78-1] gi|305851764|gb|EFM52216.1| GTP-binding protein Era [Escherichia coli NC101] gi|306906364|gb|EFN36879.1| GTP-binding protein Era [Escherichia coli W] gi|307554585|gb|ADN47360.1| GTP-binding protein Era [Escherichia coli ABU 83972] gi|307625886|gb|ADN70190.1| GTP-binding protein Era [Escherichia coli UM146] gi|308121836|gb|EFO59098.1| GTP-binding protein Era [Escherichia coli MS 145-7] gi|312289902|gb|EFR17790.1| GTP-binding protein Era [Escherichia coli 2362-75] gi|312947137|gb|ADR27964.1| GTP-binding protein Era [Escherichia coli O83:H1 str. NRG 857C] gi|315061885|gb|ADT76212.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli W] gi|315288043|gb|EFU47445.1| GTP-binding protein Era [Escherichia coli MS 110-3] gi|315292458|gb|EFU51810.1| GTP-binding protein Era [Escherichia coli MS 153-1] gi|315300507|gb|EFU59736.1| GTP-binding protein Era [Escherichia coli MS 16-3] gi|320176132|gb|EFW51199.1| GTP-binding protein Era [Shigella dysenteriae CDC 74-1112] gi|320182109|gb|EFW57013.1| GTP-binding protein Era [Shigella boydii ATCC 9905] gi|320186365|gb|EFW61099.1| GTP-binding protein Era [Shigella flexneri CDC 796-83] gi|320196402|gb|EFW71026.1| GTP-binding protein Era [Escherichia coli WV_060327] gi|320200130|gb|EFW74719.1| GTP-binding protein Era [Escherichia coli EC4100B] gi|323156224|gb|EFZ42383.1| GTP-binding protein Era [Escherichia coli EPECa14] gi|323159223|gb|EFZ45213.1| GTP-binding protein Era [Escherichia coli E128010] gi|323167800|gb|EFZ53495.1| GTP-binding protein Era [Shigella sonnei 53G] gi|323173116|gb|EFZ58747.1| GTP-binding protein Era [Escherichia coli LT-68] gi|323177304|gb|EFZ62892.1| GTP-binding protein Era [Escherichia coli 1180] gi|323184554|gb|EFZ69928.1| GTP-binding protein Era [Escherichia coli 1357] gi|323188319|gb|EFZ73611.1| GTP-binding protein Era [Escherichia coli RN587/1] gi|323377534|gb|ADX49802.1| GTP-binding protein Era [Escherichia coli KO11] gi|323944623|gb|EGB40691.1| GTP-binding protein Era [Escherichia coli H120] gi|323949220|gb|EGB45111.1| GTP-binding protein Era [Escherichia coli H252] gi|323955802|gb|EGB51560.1| GTP-binding protein Era [Escherichia coli H263] gi|324008475|gb|EGB77694.1| GTP-binding protein Era [Escherichia coli MS 57-2] gi|324014389|gb|EGB83608.1| GTP-binding protein Era [Escherichia coli MS 60-1] gi|324020024|gb|EGB89243.1| GTP-binding protein Era [Escherichia coli MS 117-3] gi|324118224|gb|EGC12120.1| GTP-binding protein Era [Escherichia coli E1167] gi|331054375|gb|EGI26402.1| GTP-binding protein Era [Escherichia coli TA206] gi|331059933|gb|EGI31910.1| GTP-binding protein Era [Escherichia coli TA143] gi|331064510|gb|EGI36421.1| GTP-binding protein Era [Escherichia coli TA271] gi|331069288|gb|EGI40680.1| GTP-binding protein Era [Escherichia coli TA280] gi|331075022|gb|EGI46342.1| GTP-binding protein Era [Escherichia coli H591] gi|331079168|gb|EGI50370.1| GTP-binding protein Era [Escherichia coli H299] gi|332089225|gb|EGI94332.1| GTP-binding protein Era [Shigella dysenteriae 155-74] gi|332092618|gb|EGI97690.1| GTP-binding protein Era [Shigella boydii 3594-74] gi|332100628|gb|EGJ03974.1| GTP-binding protein era [Shigella sp. D9] Length = 301 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 163/295 (55%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|325849572|ref|ZP_08170810.1| ribosome biogenesis GTPase Era [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480053|gb|EGC83130.1| ribosome biogenesis GTPase Era [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 293 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 170/292 (58%), Gaps = 27/292 (9%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+ + +G K+SI+++K QTTR ++ I +++ SQI+FLDTPGI Sbjct: 2 KSGFVSVVGRANVGKSTLMEKILGEKISIISNKPQTTRDEIKIIYNDENSQIIFLDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILIL 137 ++ + ++ +S ++K +DIV +VD+ L I DLL++I IL++ Sbjct: 62 QTPRNKLQEHLLEVSEDSLKDSDIVTFIVDNSLTIGRLDKMILDLLEKIKVPK---ILLI 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM----------VSATKGHGCDDVLNYLCSTLP 187 NK D LLE+ EI I+KT++ +SA + + + LP Sbjct: 119 NKCD------LLEEGEIDQ----IKKTYIGLNAFDYIIPISALNDENIEKYIQTIKEILP 168 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQ 246 P Y +D I+D +EI REK +L EIP+ V ++++++ D ++ I Sbjct: 169 EGPLYYPSDMITDKNERFIVSEIIREKALRNLSNEIPHGIFVRIDQFKKRDDKNLYDIYA 228 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I VERPS K+I++GKNG+ IK I ++A++EI ++ ++L L+VKV+KDW Sbjct: 229 SIVVERPSHKEIVIGKNGRKIKKIGMDAREEIEVFMDSKINLKLWVKVEKDW 280 >gi|94676810|ref|YP_588730.1| GTP-binding protein Era [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219960|gb|ABF14119.1| GTP-binding protein Era [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 301 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 165/286 (57%), Gaps = 3/286 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + + G VA+VG +N GKSTL+N+ +G KVSI + K QTTR + GI ++ QI+++DT Sbjct: 4 NTTYCGFVAIVGRSNVGKSTLLNKLLGQKVSITSRKPQTTRHRILGIKTDDIYQIIYIDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K+ LM R + S++ D++ VV+ + K + +L ++ R R++L+ Sbjct: 64 PGLHLRVKNKLSILMNRRASSSMNDVDLIIFVVEGIKWTKDD-ELVLSQLYDRHCRVVLV 122 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +N+ID V + +LL+ + +K + A G G + + + + LP+A ++ Sbjct: 123 INQIDKVADKNKLLKHMNLLDKKSNFHAIILACALNGIGVNILADVVRKELPIAHHLFPN 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 + I+D AEI REKL L E+PYS V E + KK+ I+ +IYVER Q Sbjct: 183 EYITDCSPCFMAAEIIREKLIRFLGDELPYSVTVKIESFTAKKNYGYEIKGMIYVERTGQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 KKI++G GQ IK IS+EA++ + + + ++L L+VKV+ W +D Sbjct: 243 KKILIGNQGQKIKKISIEARQAMKALFKTSIYLELWVKVKSKWTND 288 >gi|293604015|ref|ZP_06686428.1| GTP-binding protein Era [Achromobacter piechaudii ATCC 43553] gi|292817619|gb|EFF76687.1| GTP-binding protein Era [Achromobacter piechaudii ATCC 43553] Length = 296 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 163/291 (56%), Gaps = 27/291 (9%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL N +G+K+SIV+ K QTTR + G+++ + Q VF+DTPG Sbjct: 7 RTGFVAIVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPG- 65 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILI 136 F + + +++M R+ + D+V VV++ + E + LL R IL+ Sbjct: 66 FQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEGDAKLLPLLPN----PERTILV 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFM---------VSATKGHGCDDVLNYLCSTLP 187 ++KID +K L F+ K VSA+K D +L + S LP Sbjct: 122 VSKIDALKNRDDL--------FAFVSKIMALHPFGAVVPVSASKNQQLDQLLEEIASRLP 173 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 ++ D ++D PM AE+ REK+F + E+PY VV E+WEE G+ I Sbjct: 174 EGEAMFEEDTLTDRPMRFIAAELVREKIFRLVGDELPYGCTVVIEQWEETAKGAS-INAC 232 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + VER S K I+LG G ++K I+ EA+++IA++L++PVHL +++KV+K W Sbjct: 233 VVVERDSHKPILLGAGGMHMKRIATEARQDIAKLLDKPVHLEVYIKVRKGW 283 >gi|55822589|ref|YP_141030.1| GTP-binding protein Era [Streptococcus thermophilus CNRZ1066] gi|55738574|gb|AAV62215.1| GTP-binding protein [Streptococcus thermophilus CNRZ1066] Length = 299 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 102/281 (36%), Positives = 166/281 (59%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K++ +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EPRGKGDDMIIERLKQAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LLEQ + K + ++ +SA +G+ +++ L + +DQI+ Sbjct: 123 IDRVHPDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVSSDYLEEGFQYFPSDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D ++ IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLQLTREEIPHSVAVVIDSMKRDEETD-TVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+K+I +L V L +VKV+K+W Sbjct: 242 IVIGKKGAMLKKIGTLARKDIELMLGDKVFLETWVKVKKNW 282 >gi|257784594|ref|YP_003179811.1| GTP-binding protein Era [Atopobium parvulum DSM 20469] gi|257473101|gb|ACV51220.1| GTP-binding protein Era [Atopobium parvulum DSM 20469] Length = 312 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 154/282 (54%), Gaps = 1/282 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG + GKSTL+N +G KV+I + QTTR R +V+ + SQ+V +DTPG+ Sbjct: 18 RSGFVALVGRPSVGKSTLLNACMGQKVAIASPVAQTTRRRFRAVVNGENSQLVIVDTPGL 77 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNK 139 KD+ K + + + + AD++ ++D+ + + + + + + +LI+ K Sbjct: 78 HKPKDALGKELNKAALGELNDADVIAFLIDATKPVGRGDEWVANHVEQAHAAFKLLIITK 137 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D PE++ EQ + A LV + +VSA + + + LP P + D + Sbjct: 138 ADIATPEQVAEQLKAAQTLVHFDDVLVVSALEDFNVQAFIALVSEHLPEGPMWFPEDMET 197 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AE REKL L+L +E+P+S VV + +E DG + I I VER QK I+ Sbjct: 198 DALPEDLVAEFVREKLLLNLRQEVPHSVAVVCDSYEIATDGHLSISATILVEREGQKGIV 257 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G+ G IK + +EA+K++ ++ + V+L L V+VQ W D Sbjct: 258 VGQGGSMIKRVGVEARKDLEKLFGRKVYLDLQVRVQPLWRRD 299 >gi|169632754|ref|YP_001706490.1| GTP-binding protein Era [Acinetobacter baumannii SDF] gi|260556583|ref|ZP_05828801.1| GTP-binding protein Era [Acinetobacter baumannii ATCC 19606] gi|169151546|emb|CAP00313.1| GTP-binding protein,16S rRNA-binding,ribosome-associated GTPase [Acinetobacter baumannii] gi|260409842|gb|EEX03142.1| GTP-binding protein Era [Acinetobacter baumannii ATCC 19606] Length = 342 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 103/311 (33%), Positives = 169/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+H+ + N +L ++ Sbjct: 85 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQ-NDDLVLDKL 143 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D +R +L + KL+ + VSA +G + + + Sbjct: 144 KNADMPVILVINKADTFGDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKY 203 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 204 LPYQPPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKT 263 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+RP QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 264 GRLKPACTYIDATIFVDRPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKV 323 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 324 KGGWSDDERAL 334 >gi|24113908|ref|NP_708418.1| GTP-binding protein Era [Shigella flexneri 2a str. 301] gi|30063968|ref|NP_838139.1| GTP-binding protein Era [Shigella flexneri 2a str. 2457T] gi|81724270|sp|Q83QI5|ERA_SHIFL RecName: Full=GTPase Era gi|24053009|gb|AAN44125.1| GTP-binding protein [Shigella flexneri 2a str. 301] gi|30042224|gb|AAP17949.1| GTP-binding protein [Shigella flexneri 2a str. 2457T] gi|281601979|gb|ADA74963.1| era-like GTP-binding protein [Shigella flexneri 2002017] gi|313648244|gb|EFS12688.1| GTP-binding protein Era [Shigella flexneri 2a str. 2457T] gi|332753975|gb|EGJ84349.1| GTP-binding protein Era [Shigella flexneri 4343-70] gi|332755807|gb|EGJ86165.1| GTP-binding protein Era [Shigella flexneri 2747-71] gi|332761959|gb|EGJ92232.1| GTP-binding protein Era [Shigella flexneri K-671] gi|332766567|gb|EGJ96772.1| GTP-binding protein Era [Shigella flexneri 2930-71] gi|333000823|gb|EGK20395.1| GTP-binding protein Era [Shigella flexneri K-218] gi|333016830|gb|EGK36156.1| GTP-binding protein Era [Shigella flexneri K-304] Length = 301 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 164/294 (55%), Gaps = 13/294 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGCDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERA 291 >gi|229827515|ref|ZP_04453584.1| hypothetical protein GCWU000182_02904 [Abiotrophia defectiva ATCC 49176] gi|229788453|gb|EEP24567.1| hypothetical protein GCWU000182_02904 [Abiotrophia defectiva ATCC 49176] Length = 305 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 157/286 (54%), Gaps = 8/286 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + +++ QI+FLDTPGI Sbjct: 5 KSGFVTLIGRPNVGKSTLMNNLIGQKIAITSSKPQTTRNRIQTVYTDETGQIIFLDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A++ + M ++ T+ D+V +V+ + + + ++ + +IL++NKI Sbjct: 65 HKAQNKLGEYMDSVAERTLSEVDVVLWLVEPTTFIGKGEQHIAELLSATKTPVILVVNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V+ LL + +V + VSA G +D+L + LP P Y D ++D Sbjct: 125 DTVEKGELLPVIDKYKDMVNFKACVPVSAATGENKEDLLETVFDLLPEGPMYYDEDVVTD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL--------IRQVIYVER 252 TAE+ RE+ L E+P+ VV + +E+KD S+ I I+ ER Sbjct: 185 QAERQITAELIREQALRRLKDEVPHGVAVVIDSMKEEKDTSVRHSHKNIMNIEATIFCER 244 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GK G +K I A+ +I+++L V+L L+VKV+KDW Sbjct: 245 DSHKGIIIGKKGAMLKEIGTNARHQISDLLGMKVNLNLWVKVKKDW 290 >gi|152971422|ref|YP_001336531.1| GTP-binding protein Era [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896017|ref|YP_002920753.1| GTP-binding protein Era [Klebsiella pneumoniae NTUH-K2044] gi|262040302|ref|ZP_06013553.1| GTP-binding protein Era [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007687|ref|ZP_08306026.1| ribosome biogenesis GTPase Era [Klebsiella sp. MS 92-3] gi|189037651|sp|A6TCI0|ERA_KLEP7 RecName: Full=GTPase Era gi|150956271|gb|ABR78301.1| GTP-binding protein Era [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548335|dbj|BAH64686.1| GTP-binding protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042411|gb|EEW43431.1| GTP-binding protein Era [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535368|gb|EGF61850.1| ribosome biogenesis GTPase Era [Klebsiella sp. MS 92-3] Length = 301 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 165/296 (55%), Gaps = 13/296 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ S G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EEKSYCGFVAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM + + S+I ++V VV+ R + + +L ++ + +IL Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTQ-DDEMVLNKLRDAKAPVIL 121 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLA 189 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 122 AVNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGTNVDTIAAIVRKHLPEA 176 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 + D I+D +EI REKL L E+PYS V E++ + G I +I Sbjct: 177 IHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLIL 236 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 237 VEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|302874334|ref|YP_003842967.1| GTP-binding protein Era [Clostridium cellulovorans 743B] gi|307689399|ref|ZP_07631845.1| GTP-binding protein Era [Clostridium cellulovorans 743B] gi|302577191|gb|ADL51203.1| GTP-binding protein Era [Clostridium cellulovorans 743B] Length = 296 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 161/285 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+N +G K+SIV+ + QTTR+ ++ I+++K+ QI+F+DTPG+ Sbjct: 3 KSGYVAIIGRPNVGKSTLMNNLMGEKLSIVSPRPQTTRNNIQTILTKKDFQIIFVDTPGM 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++ ++K D+V + + EL +L+++ K +S+ L++NKI Sbjct: 63 HKPKHKLGEFMMKSVSDSLKDVDLVVFMTTADGELGPGDKHILEDLKKVNSKKFLVVNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D K E + E ++ +LV ++ +SA G D +L + LP P Y D I+D Sbjct: 123 DETKAETVAETLQVVGELVEFDEIIPISALNGKNTDKLLELMVDYLPEGPMYYPEDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +EI REK L +E+P+ V ++ K + I + E+ S K I++ Sbjct: 183 AQERFIVSEIIREKALRLLSQEVPHGIAVEIVSMKQDKKNTYHIDVNMICEKDSHKGIIV 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 GK G +K I+ A+++I ++L + V L ++VKV+K+W +P Sbjct: 243 GKGGLMMKKIATYAREDIEKLLGEKVDLKVWVKVRKEWRDNPNLL 287 >gi|324998271|ref|ZP_08119383.1| GTPase Era [Pseudonocardia sp. P1] Length = 301 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 160/289 (55%), Gaps = 11/289 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG KV+I + + QTTR +RGIV ++QIV +DTPG+ Sbjct: 11 RSGFACFVGRPNAGKSTLTNALVGQKVAITSSRPQTTRHTIRGIVHRPDAQIVLVDTPGL 70 Query: 81 FNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLI 134 + S ++R +W+ + D+V V ++ ++ I + L++IA + ++ Sbjct: 71 HRPRTLLGSRLNDLVRETWAEV---DVVGFCVPANEKVGKGDRFIAEELRKIATHTP-VV 126 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++ K D +PE++ E+ + L+ + SA G+ + + L + LP P +Y Sbjct: 127 AVVTKTDLARPEQVAERLTEVSGLMDFAEIVPTSAQSGYQVQLLADLLVARLPEGPQLYP 186 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 ++D P AE+ RE + E+P+S VV E+ KKD + I +IYVER S Sbjct: 187 DGDLTDEPEDVLVAELVREAALEGVRDELPHSIAVVVEETIAKKD-LLEIYAIIYVERSS 245 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++G+ G +K + +A+++I ++L VHL L VK+ +DW DPK Sbjct: 246 QKGIVIGRGGARLKQVGTDARRQIEKLLGTRVHLDLHVKIAEDWQRDPK 294 >gi|153005017|ref|YP_001379342.1| GTP-binding protein Era [Anaeromyxobacter sp. Fw109-5] gi|152028590|gb|ABS26358.1| GTP-binding protein Era [Anaeromyxobacter sp. Fw109-5] Length = 310 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 164/294 (55%), Gaps = 13/294 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q R+G VA+VG N GKSTL+NR +G V+IVT + QTTR+ + GI + K +QI F D Sbjct: 6 QPQFRAGFVAIVGRPNVGKSTLLNRVLGEHVAIVTPRPQTTRTRILGIWNGKGAQIAFFD 65 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHD----LLKEIAKRS 130 TPG+ AK ++ M+ ++ +T+ D V ++V++ E +V + + ++E+ +R Sbjct: 66 TPGLHRAKGPLNRRMVEVALTTLDEVDAVLMLVEAGTGPEGRVEVGEATRWAIEEVRRRG 125 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP--L 188 IL ++K+D LL + L + S G D +L L LP Sbjct: 126 KPAILGISKMDRAPRATLLPVIDAYKGLHAWTEIVPFSGLTGENVDTLLEVLSKHLPESE 185 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIR- 245 AP ++ DQ++D AE RE+L LH H+EIPY++ V E+++ E++DG L+R Sbjct: 186 AP-LFPPDQLTDQAERALAAEYVREQLMLHTHQEIPYAAAVEVEEFDEAERRDGGGLVRV 244 Query: 246 -QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 V+ VER SQK I++GK G +K + A++ + +L V L L VKV++ W Sbjct: 245 SAVVLVERESQKAIVIGKGGAMLKKVGTRARENLERLLGCKVFLSLTVKVEERW 298 >gi|15221574|ref|NP_174383.1| GTP-binding protein (ERG) [Arabidopsis thaliana] gi|11467944|sp|O82653|ERG_ARATH RecName: Full=GTP-binding protein ERG gi|9755380|gb|AAF98187.1|AC000107_10 F17F8.15 [Arabidopsis thaliana] gi|50253492|gb|AAT71948.1| At1g30960 [Arabidopsis thaliana] gi|53850539|gb|AAU95446.1| At1g30960 [Arabidopsis thaliana] gi|332193176|gb|AEE31297.1| GTP-binding protein ERG [Arabidopsis thaliana] Length = 437 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 160/290 (55%), Gaps = 11/290 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ +S V ++G NAGKS+L N VG KV+ + K TT V G++++ ++Q+ F D Sbjct: 148 EEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVAAASRKTNTTTHEVLGVLTKGDTQVCFFD 207 Query: 77 TPGIFNAKDSYH----KLMIRLSWSTIKHADIVCLVVDSHRELK------VNIHDLLKEI 126 TPG+ K Y K ++ +W+++ D++ ++ D HR L V + + E Sbjct: 208 TPGLMLKKSGYGYKDIKARVQNAWTSVDLFDVLIVMFDVHRHLMSPDSRVVRLIKYMGEE 267 Query: 127 AKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + +L +NK+D V K + LL+ AE L E+ FM+S KG G D+ YL Sbjct: 268 ENPKQKRVLCMNKVDLVEKKKDLLKVAEEFQDLPAYERYFMISGLKGSGVKDLSQYLMDQ 327 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW A +S+ + + + E+ RE+L H+H+EIPY W+E +DGS+ I Sbjct: 328 AVKKPWEEDAFTMSEEVLKNISLEVVRERLLDHVHQEIPYGLEHRLVDWKELRDGSLRIE 387 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 Q + + SQ+KI++GK G I I +EA +E+ I+ + VHLIL VK++ Sbjct: 388 QHLITPKLSQRKILVGKGGCKIGRIGIEANEELRRIMNRKVHLILQVKLK 437 >gi|78187585|ref|YP_375628.1| GTP-binding protein Era [Chlorobium luteolum DSM 273] gi|78167487|gb|ABB24585.1| GTP-binding protein Era [Chlorobium luteolum DSM 273] Length = 305 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 162/294 (55%), Gaps = 27/294 (9%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +++G NAGKSTL+N + K+SIVT K QTTR + GI +K+ Q+VFLDTPGI Sbjct: 9 GFASIIGPPNAGKSTLMNALLDCKLSIVTPKPQTTRKRITGIYHDKQMQVVFLDTPGIME 68 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSH-------RELKVNI-HDLLKEIAKRSSRLI 134 H+ M+ + T++ AD++ ++ R+ + +D LK K ++ Sbjct: 69 PMQKLHEAMLLATRDTLRDADVIIAMLPFRKKEGPFDRDFAATLQNDWLKTSGK---PIV 125 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPL 188 + NK D V L EQ+E FI + + +SA KG ++L L LP+ Sbjct: 126 AVFNKSDLVT---LKEQSEAE---AFIREAWNPAAVLSISALKGVNLPELLEALRPFLPM 179 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LI 244 +Y D +S P F +EI REK+FL +E+PYS+ VV +++ E+ + LI Sbjct: 180 NQPLYPEDALSTAPERFFVSEIIREKIFLLYGREVPYSAEVVVDEFREQHENDPSRKDLI 239 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R + VER +QK+I++G GQ +K + A+ EI E++ +PV L LF+KV+ DW Sbjct: 240 RCSVIVERDTQKQILIGHKGQALKKLGQAARTEIEELIGRPVFLELFIKVRPDW 293 >gi|257055404|ref|YP_003133236.1| GTP-binding protein Era [Saccharomonospora viridis DSM 43017] gi|256585276|gb|ACU96409.1| GTP-binding protein Era [Saccharomonospora viridis DSM 43017] Length = 300 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 158/291 (54%), Gaps = 12/291 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG+KV+I + K QTTR +RGIV +++Q++ +DTPG+ Sbjct: 7 RSGFACFVGRPNAGKSTLTNALVGSKVAITSSKPQTTRHAIRGIVHREDAQLIIVDTPGL 66 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLI 134 + + + +R +WS + D+V V + ++ I + L +IA+R+ ++ Sbjct: 67 HRPRTLLGQRLNDIVRATWSEV---DVVGFCVPADEKIGPGDRFIANELTKIARRTP-VL 122 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 I+ K D V E++ +Q ++ VSA G+ D + + L + LP P +Y Sbjct: 123 GIVTKTDLVSKEQVAKQLLALQDVMDFADLIPVSAVDGYQVDTLADLLVARLPEGPELYP 182 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK--KDGSILIRQVIYVER 252 ++D P AE+ RE + E+P+S VV E+ + +D + I +YVER Sbjct: 183 DGDLTDEPEQTLVAELIREAALEGVRDELPHSIAVVVEEMYPRPGRDDLVDIYAHVYVER 242 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 PSQ+ I+LG G +K + A+++I +L V+L L VKV KDW DPK Sbjct: 243 PSQRGIVLGHRGSRLKDVGARARRQIEALLGSKVYLDLHVKVAKDWQRDPK 293 >gi|318042122|ref|ZP_07974078.1| GTP-binding protein Era-like protein [Synechococcus sp. CB0101] Length = 330 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 159/282 (56%), Gaps = 3/282 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + RSG VALVG N GKSTL+N+ VG KV+I + QTTR+ +R I++ E+Q+V +DT Sbjct: 35 EGYRSGFVALVGRPNVGKSTLLNQLVGEKVAITSPIAQTTRNRLRAILTTPEAQLVLVDT 94 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI + +++ + I D+V L+VD + +++ ++ + + + L Sbjct: 95 PGIHKPHHLLGERLVQTARGAIGEVDLVLLLVDGSQPAGRGDGFIVELLSHARAPVHVAL 154 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D V P + +E +LV VSA G G + +++ L + LP P +Y D Sbjct: 155 NKHDLVDPAQAIELEASYRELVPDWPLHPVSALNGDGTEALVSALSAALPEGPHLYPPDA 214 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-ILIRQVIYVERPSQK 256 +SD P AE+ RE++ H +E+P+S V E+ + DG + ++VER SQK Sbjct: 215 VSDQPEQLLLAELIREQVLQHTREEVPHSVAVQIERIVD--DGPRTAVLATVFVERNSQK 272 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ ++ I A++++ +++ PV+L LFVKV +W Sbjct: 273 GILIGKGGRMLREIGSGARQQMQKLINGPVYLELFVKVVPNW 314 >gi|310828430|ref|YP_003960787.1| hypothetical protein ELI_2843 [Eubacterium limosum KIST612] gi|308740164|gb|ADO37824.1| hypothetical protein ELI_2843 [Eubacterium limosum KIST612] Length = 304 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 153/279 (54%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKSTL+N +G K+ I +K QTTR+ +R I ++ +SQ+VF+DTPG+ Sbjct: 12 KSGFISIIGRPNVGKSTLLNSIMGEKLVITANKPQTTRNAIRCIHTDADSQMVFIDTPGM 71 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ M++ + TI D+V +V+ + +L ++A + ++LI+NKI Sbjct: 72 HKPKNKLGAFMLKSAEDTISDVDVVLFLVEPEDRIGPGDQYILDKLAGSRTPVLLIINKI 131 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E LL+ F++ VSA G G ++L + L P + D + D Sbjct: 132 DTVPKEELLKTIAAYQDYTFLDSIIPVSAWNGDGVQELLAAIKKHLEPGPMYFPPDMVVD 191 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 E+ REK+ L E+P+ V K + ++D +I+ I I+ ER + K I+ Sbjct: 192 QSERFIVGELIREKVLHLLKDEVPHGVAVEVTKMKAREDKNIIDIDATIFCERKTHKGIL 251 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+K+I L+ PV+L L+VKV+ DW Sbjct: 252 IGKQGSMLKKIGTYARKDIEFFLKTPVNLQLWVKVRADW 290 >gi|325280072|ref|YP_004252614.1| GTP-binding protein Era-like-protein [Odoribacter splanchnicus DSM 20712] gi|324311881|gb|ADY32434.1| GTP-binding protein Era-like-protein [Odoribacter splanchnicus DSM 20712] Length = 304 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 154/278 (55%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V +VG N GKSTL+NR VG K+SI+T K QTTR ++GIV+ + QIVF DTPG+ Sbjct: 14 KAGFVNIVGNPNVGKSTLMNRLVGEKISIITSKSQTTRHRIKGIVNTDDYQIVFSDTPGV 73 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + ADI+ V D ++ N+ D + ++ K ++L++NKI Sbjct: 74 VKPSYKMQEYMLEFSKSALVDADIILYVTDVVENIEKNL-DFIDKVNKSDIPVLLVINKI 132 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+L + L+ + F +SAT+ D++ + LP + D+++D Sbjct: 133 DLTTQEKLEALFDKWKSLIPRAEIFPLSATENFNVDNLYKRIVELLPEGEPFFPKDELTD 192 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 LP F EI REK+ L + + S V + ++ D I I VIYVER SQK I++ Sbjct: 193 LPSRFFVNEIIREKI-LQYYDKEVPYSVEVEVEEFKEDDKRINIMAVIYVERSSQKGIII 251 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G+ +K + +A+ +I + V L L+VKV KDW Sbjct: 252 GSQGEALKKVGTQARLDIEAFFGKKVFLNLYVKVLKDW 289 >gi|332367331|gb|EGJ45066.1| GTP-binding protein Era [Streptococcus sanguinis SK1059] Length = 299 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 164/281 (58%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVEAAYSTLREVDTVLFMVPAD-ETRGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LL Q + + + ++ +SA +G+ +++ L L + DQI+ Sbjct: 123 IDKVHPDQLLAQIDDFRQQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPEDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ + +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLMLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGSMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|145223297|ref|YP_001133975.1| GTP-binding protein Era [Mycobacterium gilvum PYR-GCK] gi|315443757|ref|YP_004076636.1| GTP-binding protein Era [Mycobacterium sp. Spyr1] gi|145215783|gb|ABP45187.1| GTP-binding protein Era [Mycobacterium gilvum PYR-GCK] gi|315262060|gb|ADT98801.1| GTP-binding protein Era [Mycobacterium sp. Spyr1] Length = 304 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 101/292 (34%), Positives = 160/292 (54%), Gaps = 10/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG KV+I +++ QTTR +RGIV + QIV +DTPG+ Sbjct: 7 RSGFVCFVGRPNTGKSTLTNALVGTKVAITSNRPQTTRHTIRGIVHRDDFQIVLVDTPGL 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L T D++ + + + ++ I++ ++ +A R++ LI I+ Sbjct: 67 HRPRTLLGQRLNELVKDTYSEVDVIGMCIPADEKIGPGDRWIYEQIRAVAPRTT-LIAIV 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V +R+ EQ ++L + + VSAT G D + + L S LP P Y Sbjct: 126 TKIDKVSKDRVGEQLLAVSELFGPDADIVPVSATSGTQLDVLTDVLVSKLPPGPAFYPDG 185 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK-----DGSILIRQVIYVE 251 +++D P AE+ RE + E+P+S VV ++ EE+ D I + ++YVE Sbjct: 186 ELTDEPEEVLMAELIREAALEGVRDELPHSLAVVIDEVEERPGRPEDDPLIDVHAILYVE 245 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 R SQK I++GK G ++ + A+ +I ++L V+L L VK+ K+W DPK Sbjct: 246 RDSQKGIVIGKGGARLREVGTAARTQIEKLLGTRVYLDLRVKIAKNWQRDPK 297 >gi|56412544|ref|YP_149619.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181145|ref|YP_217562.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167549388|ref|ZP_02343147.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168232158|ref|ZP_02657216.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238325|ref|ZP_02663383.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261369|ref|ZP_02683342.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466659|ref|ZP_02700513.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821430|ref|ZP_02833430.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469999|ref|ZP_03075983.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737392|ref|YP_002115643.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248494|ref|YP_002147538.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197361479|ref|YP_002141115.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242030|ref|YP_002216647.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386770|ref|ZP_03213382.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929711|ref|ZP_03220785.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353676|ref|YP_002227477.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857987|ref|YP_002244638.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582878|ref|YP_002636676.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912698|ref|ZP_04656535.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|81309622|sp|Q57LD1|ERA_SALCH RecName: Full=GTPase Era gi|81677940|sp|Q5PIG4|ERA_SALPA RecName: Full=GTPase Era gi|226741228|sp|B5F1G0|ERA_SALA4 RecName: Full=GTPase Era gi|226741229|sp|B5FRC4|ERA_SALDC RecName: Full=GTPase Era gi|226741230|sp|B5QTU7|ERA_SALEP RecName: Full=GTPase Era gi|226741231|sp|B5RD48|ERA_SALG2 RecName: Full=GTPase Era gi|226741234|sp|B5BAT1|ERA_SALPK RecName: Full=GTPase Era gi|226741235|sp|B4TS13|ERA_SALSV RecName: Full=GTPase Era gi|254783662|sp|C0PYG8|ERA_SALPC RecName: Full=GTPase Era gi|56126801|gb|AAV76307.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128778|gb|AAX66481.1| GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194456363|gb|EDX45202.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712894|gb|ACF92115.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630802|gb|EDX49394.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197092955|emb|CAR58385.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212197|gb|ACH49594.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197288837|gb|EDY28210.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936546|gb|ACH73879.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603868|gb|EDZ02413.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321430|gb|EDZ06630.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273457|emb|CAR38434.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325335|gb|EDZ13174.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205333611|gb|EDZ20375.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341982|gb|EDZ28746.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349353|gb|EDZ35984.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709790|emb|CAR34142.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467405|gb|ACN45235.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320087081|emb|CBY96850.1| GTP-binding protein era homolog [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613350|gb|EFY10292.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620446|gb|EFY17311.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625086|gb|EFY21915.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629470|gb|EFY26246.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633857|gb|EFY30596.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635463|gb|EFY32174.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639861|gb|EFY36540.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644253|gb|EFY40797.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649945|gb|EFY46365.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654872|gb|EFY51189.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658200|gb|EFY54466.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661728|gb|EFY57946.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669709|gb|EFY65855.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673284|gb|EFY69389.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674927|gb|EFY71014.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682950|gb|EFY78968.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685611|gb|EFY81606.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715635|gb|EFZ07206.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323191961|gb|EFZ77199.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200406|gb|EFZ85487.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201306|gb|EFZ86373.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208376|gb|EFZ93316.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211548|gb|EFZ96386.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215980|gb|EGA00712.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221761|gb|EGA06169.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225631|gb|EGA09858.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229349|gb|EGA13473.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235336|gb|EGA19420.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237478|gb|EGA21541.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245233|gb|EGA29234.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248807|gb|EGA32734.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254013|gb|EGA37834.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259061|gb|EGA42709.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261984|gb|EGA45549.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267767|gb|EGA51248.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269674|gb|EGA53126.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624402|gb|EGE30747.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628780|gb|EGE35123.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 301 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 103/295 (34%), Positives = 163/295 (55%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKTYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIAGIVRKHLPEAI 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|323704187|ref|ZP_08115766.1| GTP-binding protein Era [Thermoanaerobacterium xylanolyticum LX-11] gi|323536253|gb|EGB26025.1| GTP-binding protein Era [Thermoanaerobacterium xylanolyticum LX-11] Length = 299 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 156/279 (55%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG AL+G TN GKSTL+N + KV+I + K QTTR+ ++GI++ ++ Q++F+DTPGI Sbjct: 4 KSGFAALIGRTNVGKSTLLNALLNEKVAITSDKPQTTRNTIQGILTGEDYQVIFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + MI T+ D++ +V+ E+ ++ + + +IL++NKI Sbjct: 64 HKPKHKLSEFMIESVKKTLAEVDLIIYMVEPDVEVGPGDKYIIDHLINIETPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E + +I +L + +SA K D + + + S +P P + +D I+D Sbjct: 124 DTVSHETVDMSIQIFKQLYNFKDILPISALKNMNIDLLKHTIVSYIPEGPQYFPSDYITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P +EI REK+ +L E+P+ V + + ++D IL I IY E+ S K I+ Sbjct: 184 RPEKFLVSEIIREKILNYLEDEVPHGVYVEVDSMKAREDKDILDIEAFIYCEKESHKAII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNGQ ++ I A+ E+ + Q ++L L+VKV+K W Sbjct: 244 IGKNGQMLRRIGSSARIELESLFGQKIYLDLWVKVRKGW 282 >gi|325694805|gb|EGD36710.1| GTP-binding protein Era [Streptococcus sanguinis SK150] Length = 299 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LL Q + + + ++ +SA +G+ +++ L L + DQI+D Sbjct: 124 DKVHPDQLLAQIDDFRQQMDFKEIVPISALQGNNVSHLVDILSENLEEGFQYFPEDQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ + +EIP+S VV + K +E+ D I IR I VER SQK I Sbjct: 184 HPERFLVSEMIREKVLMLTREEIPHSVAVVVDSMKRDEETD-KIHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 243 IIGKGGSMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|266621740|ref|ZP_06114675.1| GTP-binding protein Era [Clostridium hathewayi DSM 13479] gi|288866563|gb|EFC98861.1| GTP-binding protein Era [Clostridium hathewayi DSM 13479] Length = 280 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 152/273 (55%), Gaps = 1/273 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + +N +SG V L+G N GKSTL+N +G K++I + K QTTR+ ++ + +++ QI+FL Sbjct: 1 MDNNYKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI AK+ + M+ ++ T+K D+V +V+ + + +++ + +IL Sbjct: 61 DTPGIHKAKNKLGEYMVSVAEHTLKEVDVVLWLVEPTTFIGAGERHIAEQLQNVKTPVIL 120 Query: 136 ILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++NKID +K + +LE + + VSA K D +L+ + LP P Y Sbjct: 121 VINKIDTIKNQDEILEFIAAYKDVCSFAEIVPVSALKDKNTDLMLDLIYKYLPCGPQYYD 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D PM +E+ REK L EIP+ V EK E+K+G + I I ER S Sbjct: 181 EDTVTDQPMRQIASELIREKALRLLSDEIPHGIAVTIEKMTERKNGMMDIEATIVCERDS 240 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVH 287 K I++GK G +K I A++EI ++++ V+ Sbjct: 241 HKGIIIGKGGAMLKRIGSAARREIEDLMDTQVN 273 >gi|262282704|ref|ZP_06060472.1| GTP-binding protein [Streptococcus sp. 2_1_36FAA] gi|262261995|gb|EEY80693.1| GTP-binding protein [Streptococcus sp. 2_1_36FAA] Length = 299 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 165/281 (58%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVEAAYSTLREVDTVLFMVPAD-EPRGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LL Q + + + ++ +SA +G+ +++ L L + ADQI+ Sbjct: 123 IDKVHPDQLLAQIDDFRQQMDFKEIVPISALQGNNVSHLVDILSENLEEGFQYFPADQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ + +EIP+S VV + K +++ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLMLTREEIPHSVAVVIDSMKRDDETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGSMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|254281726|ref|ZP_04956694.1| GTP-binding protein Era [gamma proteobacterium NOR51-B] gi|219677929|gb|EED34278.1| GTP-binding protein Era [gamma proteobacterium NOR51-B] Length = 300 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 165/286 (57%), Gaps = 8/286 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S+ G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +QI+F+DTPG Sbjct: 7 SKCGYVAIVGRPNVGKSTLLNYLLGQKISITSRKPQTTRNQVLGIKTDGNTQIIFVDTPG 66 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILIL 137 I +++ + ++ M R + + + D+V V D +R + + DL L +K ++ + L++ Sbjct: 67 IHSSEPRAINRFMNRTAAAAVNDVDLVLQVCDRNRWTEED--DLVLSAASKSAAPVALVI 124 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D + P++LL AE + F +SA + D + +++ +P P + D Sbjct: 125 NKVDLLDHPDQLLNFAETMTQKHNFTGVFPISALRNKQLDTLDDFIADKMPEGPHFFPDD 184 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQ 255 Q++D AE+ REK+ L E+PY++ V E + + G L I +IYVER Q Sbjct: 185 QVTDRSERFLAAELIREKIVRQLGDELPYTTAVEIEDFSLQ--GKTLHIAALIYVERDGQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K+I++G+ G +++I +A+K++ + V L L+VKV+ W D Sbjct: 243 KRILIGEGGSRLRSIGTDARKDMERAFDSKVMLKLWVKVKSGWSDD 288 >gi|16761492|ref|NP_457109.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140811|ref|NP_804153.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161854|ref|ZP_03347564.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420939|ref|ZP_03354005.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425277|ref|ZP_03358027.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213613050|ref|ZP_03370876.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646354|ref|ZP_03376407.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289825502|ref|ZP_06544709.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21263585|sp|Q8Z4K5|ERA_SALTI RecName: Full=GTPase Era gi|25294154|pir||AB0829 GTP-binding protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503792|emb|CAD02782.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136436|gb|AAO68002.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 301 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 103/295 (34%), Positives = 164/295 (55%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKTYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIASIVRKHLPEAI 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|296876081|ref|ZP_06900135.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 15912] gi|296432792|gb|EFH18585.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 15912] Length = 299 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 102/281 (36%), Positives = 163/281 (58%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTNKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LL Q + + ++ +SA +G+ +++ L L + ADQI+ Sbjct: 123 IDKVHPDQLLAQIDDFRSQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+K+I +L V L +VKV+K+W Sbjct: 242 IVIGKGGAMLKKIGTLARKDIELMLGDKVFLETWVKVKKNW 282 >gi|296269145|ref|YP_003651777.1| GTP-binding protein Era [Thermobispora bispora DSM 43833] gi|296091932|gb|ADG87884.1| GTP-binding protein Era [Thermobispora bispora DSM 43833] Length = 303 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 158/287 (55%), Gaps = 4/287 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG N GKSTL+N VG KV+I + K QTTR +RGIV ++Q++ +DTPG Sbjct: 8 RAGFACFVGRPNVGKSTLMNALVGTKVAITSSKPQTTRRAIRGIVHRPDAQLIIVDTPGF 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNK 139 + + + L ST+ D++ + ++ + + +++ A + + ++ I+ K Sbjct: 68 HRPRTLLGERLDSLVLSTLSEVDVIGFCIPANEPIGKGDRFITEKLKAVKETPVVAIVTK 127 Query: 140 IDCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D E++++Q +LV F E+ VSA G D + + L + LP++P +Y ++ Sbjct: 128 CDVASREQIVKQLVAVEQLVDFAEEIVPVSAVSGERLDVLTDLLVARLPVSPPLYPEGEL 187 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P AE+ RE + E+P+S VV E K E +D + I IYVERPSQK Sbjct: 188 TDEPEQVLVAELIREAALEGVRDELPHSIAVVVEEMKPREDRDDLLEIYADIYVERPSQK 247 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++G G +K + + A+++I +L V+L L V+V ++W DPK Sbjct: 248 AIVIGPGGARLKEVGIRARRQIEALLGTHVYLSLHVRVAREWQRDPK 294 >gi|187477631|ref|YP_785655.1| GTP-binding protein Era [Bordetella avium 197N] gi|123514187|sp|Q2KWX8|ERA_BORA1 RecName: Full=GTPase Era gi|115422217|emb|CAJ48741.1| GTP-binding protein [Bordetella avium 197N] Length = 296 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 105/284 (36%), Positives = 165/284 (58%), Gaps = 13/284 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL N +G+K+SIV+ K QTTR + G+++ + Q VF+DTPG Sbjct: 7 RTGFVAIVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPG- 65 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILI 136 F + + +++M R+ + D+V VV++ + E + LL ++ R IL Sbjct: 66 FQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEGDAKLLPLL----PKAERTILA 121 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++KID +K L A+I + + VSATK H D +L + LP ++ Sbjct: 122 ISKIDALKSRDELFPFVAKIMAQHAY-GAVVPVSATKNHQLDQLLEEIAQRLPEGEPMFE 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D M AE+ REK+F + E+PY VV E+WEE D I + VER S Sbjct: 181 EDTLTDRSMRFIAAELVREKIFRLVGDELPYGCTVVIEQWEE-TDAHARIAACVVVERDS 239 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + I+LG GQ++K I+ EA+++IA++L++PVHL +++KV+K W Sbjct: 240 HRPILLGAGGQHMKRIATEARQDIAKLLDKPVHLEVYIKVRKGW 283 >gi|119493602|ref|ZP_01624266.1| GTP-binding protein Era [Lyngbya sp. PCC 8106] gi|119452592|gb|EAW33775.1| GTP-binding protein Era [Lyngbya sp. PCC 8106] Length = 312 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 161/301 (53%), Gaps = 20/301 (6%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F N D +SG V ++G N GKSTL+N+ VG K++I + QTTR+ +RGI++ Sbjct: 6 FENFSIPIAPDGYKSGFVGIIGRPNVGKSTLMNQMVGQKIAITSPVAQTTRNRLRGILTT 65 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLK 124 E+QI+F+DTPGI +++++ + I+ D++ VVD I DLL Sbjct: 66 PEAQIIFVDTPGIHKPHHQLGQVLVKNAQIAIRSVDVLLFVVDGSVMAGGGDRFIADLLN 125 Query: 125 EIAKRSSRLILILNKID--CVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDDV 178 +IL LNK+D +P+R+ E + IE SA G G D + Sbjct: 126 ST---KVPVILGLNKLDQQPQEPQRINESYQ-----QLIESHSWPILQFSALTGTGVDSL 177 Query: 179 LNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK 238 + + L P+ Y D ++D P E+ RE++ LH +E+P+S + ++ EE Sbjct: 178 QHLIIEQLEPGPYYYPPDLVTDQPERFIMGELIREQILLHTREEVPHSVAISIDRVEE-- 235 Query: 239 DGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKD 297 D I I I+ ERPSQK I++GK GQ +KTI +A+++I +++ V+L LFVKVQ Sbjct: 236 DPKITRILATIHAERPSQKGILIGKGGQMLKTIGSDARQQIQKLVAGQVYLELFVKVQPK 295 Query: 298 W 298 W Sbjct: 296 W 296 >gi|56459917|ref|YP_155198.1| GTPase Era [Idiomarina loihiensis L2TR] gi|56178927|gb|AAV81649.1| GTPase Era [Idiomarina loihiensis L2TR] Length = 305 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 171/292 (58%), Gaps = 3/292 (1%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + +N SG VA+VG N GKSTL+NR +G K+SI ++K QTTR + G+ ++ Q +++ Sbjct: 7 LDENKHSGFVAIVGRPNVGKSTLINRLLGQKISITSNKPQTTRHRILGVDTDDGCQAIYV 66 Query: 76 DTPGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPG+ + + +++M + + S +K D+V VV++ + L+ + +L++I + ++ Sbjct: 67 DTPGMHKQEPRAINRVMNQTASSALKDVDLVLFVVENLKWLEDDKM-VLEKIQRSKVPVV 125 Query: 135 LILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L++NK+D +K ERLL + N+ + +SAT G D++ + S L Y Sbjct: 126 LLVNKVDQLKDKERLLPHLQWLNEQHKFDAILPISATHGDNVDELRKIVRSHLQPGYHYY 185 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D ++D + AEI REKL E+PY + V E++ + + G+ I +I VER Sbjct: 186 PEDYVTDRSVRFMAAEIVREKLMRFTGDELPYETTVEIEQFGQSEKGTTHIHALILVERE 245 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +QK++++G+ G +KTI EA++++ ++L+ V + L+VKV+ W D + Sbjct: 246 AQKRMIIGQGGSKLKTIGTEARRDLEKLLDNKVMMKLWVKVKSGWSDDERAL 297 >gi|88809126|ref|ZP_01124635.1| hypothetical protein WH7805_05521 [Synechococcus sp. WH 7805] gi|88787068|gb|EAR18226.1| hypothetical protein WH7805_05521 [Synechococcus sp. WH 7805] Length = 312 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 161/294 (54%), Gaps = 9/294 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG VAL+G N GKSTLVN+ VG KV+I + QTTR+ +R I++ E+Q++ +DT Sbjct: 8 DGHRSGFVALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTAEAQLILVDT 67 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI + +++ + S I D V L+++ ++ + ++ + ++L Sbjct: 68 PGIHKPHHLLGERLVQSARSAIGEVDQVLLLLEGCEPPGRGDAFIVNLLRQQRLPVQVVL 127 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYS 194 NK D V R E A+ A + + E + + A G GC +++ + + +P P +Y Sbjct: 128 NKWDQVPTARRPE-ADAAYRDLLAESGWPIHHCCALTGEGCPELVRAVSALMPEGPQLYP 186 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-----KKDGSILIRQVIY 249 AD +SD P AE+ RE++ L +E+P+S V ++ EE K G + + Sbjct: 187 ADMVSDQPERLLMAELIREQVLLLTREEVPHSVAVSIDRVEEMPSKGKGSGRTAVLATVL 246 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK I++GK G +KTI A+ ++ +++ PV+L LFVKV DW P+ Sbjct: 247 VERKSQKGILIGKGGAMLKTIGQGARLQMQTLIDGPVYLELFVKVVPDWRSKPQ 300 >gi|262375525|ref|ZP_06068758.1| GTP-binding protein Era [Acinetobacter lwoffii SH145] gi|262309779|gb|EEY90909.1| GTP-binding protein Era [Acinetobacter lwoffii SH145] Length = 342 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 103/314 (32%), Positives = 171/314 (54%), Gaps = 20/314 (6%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + RSG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSAQGTEIPSDYRSGFVAIVGRPNVGKSTLMNHILGQKLSITSRKPQTTRHKIVGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++SQ VF+DTPG+ + + +K+M R + S ++ ++V VVD+ + N +L+++ Sbjct: 85 EKSQAVFVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVVDAQK-WTPNDDLVLEKL 143 Query: 127 AKRSSRLILILNKIDCVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +IL++NK+D + + L+ + E KL+ + VSA +G + + + + Sbjct: 144 KNAEMPVILVINKLDTFENKNEALPLIRERE---KLMNFAEIVPVSALRGANLEHLRDTI 200 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYS-----------SCVVT 231 LP P +YS DQ++D +EI REK+ L +E+PY V+ Sbjct: 201 AKYLPFQPPLYSLDQLTDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEPVLN 260 Query: 232 EKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILF 291 EK K I I+V+RPSQK I++G+ G +K I ++A+ ++ ++ EQ + L L+ Sbjct: 261 EKTGRMKAACTYIDATIFVDRPSQKAIVIGEKGVKLKKIGMDARLDMEKMFEQKIMLTLW 320 Query: 292 VKVQKDWGHDPKCC 305 VKV+ W D + Sbjct: 321 VKVKGGWSDDERAL 334 >gi|288905822|ref|YP_003431044.1| GTP-binding protein era [Streptococcus gallolyticus UCN34] gi|306831911|ref|ZP_07465066.1| GTP-binding protein Era [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834025|ref|ZP_07467146.1| GTP-binding protein Era [Streptococcus bovis ATCC 700338] gi|325978857|ref|YP_004288573.1| GTP-binding protein era [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732548|emb|CBI14120.1| GTP-binding protein era [Streptococcus gallolyticus UCN34] gi|304423813|gb|EFM26958.1| GTP-binding protein Era [Streptococcus bovis ATCC 700338] gi|304425837|gb|EFM28954.1| GTP-binding protein Era [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178785|emb|CBZ48829.1| era, yqfH, sdgE, bex, rbaA GTP-binding protein era homolog [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 298 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 160/279 (57%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K++ M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKNALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ + ++N L L + DQI+D Sbjct: 123 DKVHPDQLLEQIDDFRSQMDFKEIVPISALQGNNVETLMNILKDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE-EKKDGSILIRQVIYVERPSQKKIM 259 P +E+ REK+ +E+P+S V+ E + + + + IR I VER SQK I+ Sbjct: 183 HPERFLVSEMIREKILKLTEQEVPHSVAVIVESMKRDPETDKVHIRATIMVERDSQKGII 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 243 IGKQGAMLKKIGKMARRDIEIMLGDKVYLETWVKVKKNW 281 >gi|121534215|ref|ZP_01666040.1| GTP-binding protein Era [Thermosinus carboxydivorans Nor1] gi|121307318|gb|EAX48235.1| GTP-binding protein Era [Thermosinus carboxydivorans Nor1] Length = 298 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 162/279 (58%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTLVN VG K++I++ K QTTR+ + +++ ++QI+F+DTPGI Sbjct: 8 KSGFVAVIGRPNVGKSTLVNSLVGQKIAIMSDKPQTTRNRILCVLTLDDAQILFIDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++ + +T++ D++ VVD+ E +L+ +AK ++ +IL++NK+ Sbjct: 68 HKPKHRLGEYMVQAAETTLREVDVILFVVDATAEKGAGEQYILERLAKVATPVILVVNKV 127 Query: 141 DCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + KP+ L + A F +SA + D +L+ + L P Y D ++ Sbjct: 128 DQIPKPQVLPIIDQYARSRDF-AAVVPISALQKVNLDRLLDEVKKHLAPGPKYYPDDMVT 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P AE+ REK +EIP++ V E+ ++ +G + IR VIYVER SQK I+ Sbjct: 187 DQPERLIIAELIREKALHLTREEIPHAIAVDIEEIVKRPNGDLYIRAVIYVERDSQKGII 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G +K I A+ +I +L +L L+VKV++DW Sbjct: 247 IGAGGNMLKEIGRLARVDIENLLGSKSYLDLWVKVKRDW 285 >gi|309800252|ref|ZP_07694428.1| GTP-binding protein Era [Streptococcus infantis SK1302] gi|308116105|gb|EFO53605.1| GTP-binding protein Era [Streptococcus infantis SK1302] Length = 299 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 104/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVIFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + ADQI Sbjct: 123 IDKVHPDQLLAQIDDFRNQMDFKE-IVPISALQGNNVSRLIDILSENLEEGFQYFPADQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGTMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|161502268|ref|YP_001569380.1| GTP-binding protein Era [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189037665|sp|A9MGX7|ERA_SALAR RecName: Full=GTPase Era gi|160863615|gb|ABX20238.1| hypothetical protein SARI_00298 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 301 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 163/290 (56%), Gaps = 13/290 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM + + S+I ++V VV+ R + +L ++ + +IL +NK+D Sbjct: 69 EEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVD 127 Query: 142 CVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 V+ E+A++ L F+ + +F+ +SA G D + + + LP A + Sbjct: 128 NVQ-----EKADLLPHLQFLASQMSFLDIVPISAETGMNVDTIASIVRKHLPEATHHFPE 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D +EI REKL L E+PYS V E++ + G I +I VER Q Sbjct: 183 DYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILVEREGQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 KK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 243 KKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|156932891|ref|YP_001436807.1| GTP-binding protein Era [Cronobacter sakazakii ATCC BAA-894] gi|189037649|sp|A7MH00|ERA_ENTS8 RecName: Full=GTPase Era gi|156531145|gb|ABU75971.1| hypothetical protein ESA_00693 [Cronobacter sakazakii ATCC BAA-894] Length = 301 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 163/290 (56%), Gaps = 13/290 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E E Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM + + S+I ++V VV+ R + +L ++ + + +IL +NK+D Sbjct: 69 EEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAINKVD 127 Query: 142 CVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 V+ ++AE+ L F+ + F+ +SA G D + + LP A + Sbjct: 128 NVQ-----DKAELLPHLQFLGSQMNFLDIVPISAETGMNVDTIAAIVRKHLPEAIHHFPE 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D +EI REKL L E+PYS V E++ + G I +I VER Q Sbjct: 183 DYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILVEREGQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 KK+++G G IKTI +EA+K++ ++ E PVHL L+VKV+ W D + Sbjct: 243 KKMVIGNKGAKIKTIGIEARKDMQDMFEAPVHLELWVKVKSGWADDERAL 292 >gi|134098073|ref|YP_001103734.1| GTP-binding protein Era [Saccharopolyspora erythraea NRRL 2338] gi|291007468|ref|ZP_06565441.1| GTP-binding protein Era [Saccharopolyspora erythraea NRRL 2338] gi|133910696|emb|CAM00809.1| GTP-binding protein of Era/ThdF family [Saccharopolyspora erythraea NRRL 2338] Length = 301 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 156/291 (53%), Gaps = 6/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG VG NAGKSTL N VG+KV+I + K QTTR +RGIV ++Q++ +DT Sbjct: 5 DAHRSGFACFVGRPNAGKSTLTNALVGSKVAITSSKPQTTRHAIRGIVHRPDAQLIIVDT 64 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLI 134 PG+ + + + L + T D+V V + +++ I + L ++AKR+ +I Sbjct: 65 PGLHRPRTLLGQRLNDLVYETWSEVDVVGFCVPADQKIGPGDRYIAEQLAKVAKRTP-VI 123 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++ K D V +++ EQ +++ SA + D + + L LP P +Y Sbjct: 124 GVVTKTDLVGKQQVAEQLLALQQVMEFADLVPCSAVDSYQMDVLADLLVGRLPEGPQLYP 183 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVER 252 +++D P AE+ RE + E+P+S V E+ E +D I + VIYVER Sbjct: 184 DGELTDEPETTLIAELIREAALEGVRDELPHSLAVGIEEMVPREGRDDLIDVHAVIYVER 243 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++G+ G+ ++ + +A+K I +L ++L L VKV KDW DPK Sbjct: 244 QSQKAIVIGRGGERLRAVGSQARKHIQALLGSKIYLDLHVKVAKDWQRDPK 294 >gi|125718416|ref|YP_001035549.1| GTP-binding protein Era [Streptococcus sanguinis SK36] gi|323351170|ref|ZP_08086826.1| GTP-binding protein Era [Streptococcus sanguinis VMC66] gi|189037679|sp|A3CP94|ERA_STRSV RecName: Full=GTPase Era gi|125498333|gb|ABN44999.1| Era-like GTP-binding protein, putative [Streptococcus sanguinis SK36] gi|322122394|gb|EFX94105.1| GTP-binding protein Era [Streptococcus sanguinis VMC66] gi|324991449|gb|EGC23382.1| GTP-binding protein Era [Streptococcus sanguinis SK353] gi|325687311|gb|EGD29333.1| GTP-binding protein Era [Streptococcus sanguinis SK72] gi|325690752|gb|EGD32753.1| GTP-binding protein Era [Streptococcus sanguinis SK115] gi|325696180|gb|EGD38071.1| GTP-binding protein Era [Streptococcus sanguinis SK160] gi|327470591|gb|EGF16047.1| GTP-binding protein Era [Streptococcus sanguinis SK330] gi|328946703|gb|EGG40841.1| GTP-binding protein Era [Streptococcus sanguinis SK1087] gi|332358996|gb|EGJ36817.1| GTP-binding protein Era [Streptococcus sanguinis SK49] gi|332362403|gb|EGJ40203.1| GTP-binding protein Era [Streptococcus sanguinis SK1056] Length = 299 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LL Q + + + ++ +SA +G+ +++ L L + DQI+D Sbjct: 124 DKVHPDQLLAQIDDFRQQMDFKEIVPISALQGNNVSHLIDILSENLEEGFQYFPEDQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ + +EIP+S VV + K +E+ D + IR I VER SQK I Sbjct: 184 HPERFLVSEMIREKVLMLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 243 IIGKGGSMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|260551499|ref|ZP_05825683.1| GTP-binding protein 16S rRNA-binding, ribosome-associated GTPase [Acinetobacter sp. RUH2624] gi|260405493|gb|EEW98986.1| GTP-binding protein 16S rRNA-binding, ribosome-associated GTPase [Acinetobacter sp. RUH2624] Length = 342 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 176/311 (56%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+++ + N +L+++ Sbjct: 85 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQ-NDDLVLEKL 143 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D + +R +L + KL+ + VSA +G + + + Sbjct: 144 KNAEMPVILVINKADTFEDKREILPLIQERTKLMNFAEIVPVSALRGANLEHLSETIEKY 203 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEE----KKD 239 LP P +YS DQI+D +EI REK+ L +E+PY V E K EE +K+ Sbjct: 204 LPYQPPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKN 263 Query: 240 GSI-----LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 G + I I+V+RP QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 264 GRLKPACTYIDATIFVDRPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKV 323 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 324 KGGWSDDERAL 334 >gi|297565483|ref|YP_003684455.1| GTP-binding protein Era [Meiothermus silvanus DSM 9946] gi|296849932|gb|ADH62947.1| GTP-binding protein Era [Meiothermus silvanus DSM 9946] Length = 297 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 163/294 (55%), Gaps = 20/294 (6%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA+VG N GKSTL+N +G KV+ ++ K QTTR +RGI SE QIVF+DTPG+ Sbjct: 8 SGFVAIVGKPNVGKSTLLNALLGVKVAPISPKPQTTRKRIRGIYSEGNRQIVFVDTPGVH 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILIL 137 +D+ M + + + V VVD RE ++ + +L+ I ++ ++L+ Sbjct: 68 EPEDALGDYMSQQVAEALADVNAVVWVVDLRHPPTREDEL-VARMLQPI--QNVPILLVG 124 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS-- 194 NK+D K PE +++ L+ + M+SA ++ + L + LP P+ Y Sbjct: 125 NKLDAAKRPEDAMQEY---RSLLHQAEPRMLSALDERAVKNLRDELLAMLPEGPFFYPEV 181 Query: 195 ---ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +DQ + ++AEI RE+ L +EIPY+ TE++ E++ G + IR V+YVE Sbjct: 182 FSRSDQSPE----EWSAEIVREEAMKRLREEIPYAIATKTEEFTEREKGKLYIRTVLYVE 237 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R S K I++GK G+ +K I A+K++ L +PV+L L VKV W DP+ Sbjct: 238 RDSHKPILIGKGGRMLKEIGQAARKQLEVFLSRPVYLELEVKVYPGWRKDPEAL 291 >gi|319946540|ref|ZP_08020775.1| GTP-binding protein Era [Streptococcus australis ATCC 700641] gi|319747286|gb|EFV99544.1| GTP-binding protein Era [Streptococcus australis ATCC 700641] Length = 299 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 102/281 (36%), Positives = 163/281 (58%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LL Q + + ++ +SA +G+ +++ L L + ADQI+ Sbjct: 123 IDKVHPDQLLAQIDDFRSQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+K+I +L V L +VKV+K+W Sbjct: 242 IVIGKGGAMLKKIGTLARKDIELMLGDKVFLETWVKVKKNW 282 >gi|206579346|ref|YP_002237091.1| GTP-binding protein Era [Klebsiella pneumoniae 342] gi|288934053|ref|YP_003438112.1| GTP-binding protein Era [Klebsiella variicola At-22] gi|290508249|ref|ZP_06547620.1| GTP-binding protein Era [Klebsiella sp. 1_1_55] gi|226741220|sp|B5XNH1|ERA_KLEP3 RecName: Full=GTPase Era gi|206568404|gb|ACI10180.1| GTP-binding protein Era [Klebsiella pneumoniae 342] gi|288888782|gb|ADC57100.1| GTP-binding protein Era [Klebsiella variicola At-22] gi|289777643|gb|EFD85640.1| GTP-binding protein Era [Klebsiella sp. 1_1_55] Length = 301 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 164/292 (56%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ S G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EEKSYCGFVAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM + + S+I ++V VV+ R + + +L ++ + +IL Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTQ-DDEMVLNKLRDAKAPVIL 121 Query: 136 ILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D V K E L +A+++ F++ +SA G D + + LP A + Sbjct: 122 AVNKVDNVQDKAELLPHLQFLASQMNFLD-IVPISAETGTNVDTIAAIVRKHLPEAIHHF 180 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D I+D +EI REKL L E+PYS V E++ + G I +I VER Sbjct: 181 PEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILVERE 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G G IKTI +EA+K++ ++ E PVHL L+VKV+ W D + Sbjct: 241 GQKKMVIGNKGAKIKTIGIEARKDMQDMFEAPVHLELWVKVKSGWADDERAL 292 >gi|291542200|emb|CBL15310.1| GTP-binding protein Era [Ruminococcus bromii L2-63] Length = 305 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 160/282 (56%), Gaps = 1/282 (0%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + +S +A+VG N GKS+++NR +G K++IV+ K QTTR+ + G++++ E Q+VF DT Sbjct: 6 NKDKSAFIAIVGRPNVGKSSILNRLMGQKIAIVSSKPQTTRNRITGVLTQGEYQLVFFDT 65 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ K S K M+R ++ D LVV++ +E +L+++ IL + Sbjct: 66 PGMHKPKTSLGKYMVRSVNESVGGVDCCMLVVEAGKEPGDTELNLIEKFKSMEMPAILAI 125 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID +K E L++Q + L + VSA G+G +++L+ L + D Sbjct: 126 NKIDTLKEKEELMKQIARYSLLYDFDAVVPVSAQDGNGMNELLDELKKQAGEGGHFFDDD 185 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D P AEI REK+ +EIP+ + VV EK + + +G + I I+ E+ + K Sbjct: 186 TLTDQPERVIVAEIIREKILRLCDREIPHGTAVVIEKMKTRDNGMLDIDATIFCEKETHK 245 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +I++GKNG +K IS A+++I + V L +VKV++DW Sbjct: 246 RIIIGKNGSMLKKISTFARQDIERFFDCKVFLQTWVKVKEDW 287 >gi|290968422|ref|ZP_06559961.1| GTP-binding protein Era [Megasphaera genomosp. type_1 str. 28L] gi|290781418|gb|EFD94007.1| GTP-binding protein Era [Megasphaera genomosp. type_1 str. 28L] Length = 299 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 154/283 (54%), Gaps = 12/283 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA+VG N GKSTL+N V KVSIV+ K QTTR+ + I ++ QIVFLDTPGI Sbjct: 8 SGFVAVVGRPNVGKSTLINYIVRQKVSIVSDKAQTTRNRILCIYTDAAGQIVFLDTPGIH 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + M ++ +++ D V +V + + + +++ + L++NK+D Sbjct: 68 KPKHKLGEYMDAAAYQSLRDIDAVLFLVAGNEKKGPGDLFVAEKLNACKVPVFLLINKVD 127 Query: 142 CVKPERLLEQAEIANKLVFIEKTFM------VSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 LL +AEI K+ + VSA G V+ L LP P + Sbjct: 128 ------LLTKAEILQKITEYRSVYPFAGIIPVSARTGDNVATVMGELKKILPPGPQYFPE 181 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P AEI REKL L L +EIP++ V ++ ++++ + IR +YVER SQ Sbjct: 182 DMVTDQPERVLAAEIIREKLLLSLREEIPHAIAVYVDEMKKREKNKVYIRATVYVERNSQ 241 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K+I++GKNG +K + A++EI +L V L ++VK++ DW Sbjct: 242 KRIVIGKNGSVLKEVGQAARQEIENLLGSSVFLDIWVKIKADW 284 >gi|332358725|gb|EGJ36548.1| GTP-binding protein Era [Streptococcus sanguinis SK355] Length = 299 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 164/281 (58%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVEAAYSTLREVDTVLFMVPAD-EPRGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LL Q + + + ++ +SA +G+ +++ L L + DQI+ Sbjct: 123 IDKVHPDQLLAQIDDFRQQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPEDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ + +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLMLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGSMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|257470080|ref|ZP_05634172.1| GTP-binding protein Era [Fusobacterium ulcerans ATCC 49185] gi|317064304|ref|ZP_07928789.1| GTP binding protein [Fusobacterium ulcerans ATCC 49185] gi|313689980|gb|EFS26815.1| GTP binding protein [Fusobacterium ulcerans ATCC 49185] Length = 297 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 95/281 (33%), Positives = 159/281 (56%), Gaps = 4/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ +Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNNNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILN 138 AK + M + +K D++ ++D +E+ +++ + AK++ R IL++N Sbjct: 62 HKAKHLLGEYMTNSAIRVLKDVDVILFLLDGSQEISTGDQFVMERVMEAKKTPR-ILVIN 120 Query: 139 KIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID + E+L ++ E+ KL + +S G +L + + Y D Sbjct: 121 KIDKLSDEQLAAKREEVKEKLGEFDGIVEISGQYAFGLPRLLEAIEPFMEEGIKYYPDDM 180 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +D+ ++ EI REK+ L EIP+S + +++ G IYVER SQK Sbjct: 181 YTDMSVYKIITEIVREKILLKTRDEIPHSVAIEILDVAKREKGRDKFDVNIYVERDSQKG 240 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GKNG+ +K I EA+K+I +L +P++L L+VKV+ DW Sbjct: 241 IIIGKNGKLLKEIGTEARKDIETLLGEPIYLTLWVKVKDDW 281 >gi|309811062|ref|ZP_07704860.1| ribosome biogenesis GTPase Era [Dermacoccus sp. Ellin185] gi|308435026|gb|EFP58860.1| ribosome biogenesis GTPase Era [Dermacoccus sp. Ellin185] Length = 314 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 155/292 (53%), Gaps = 9/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G LVG NAGKSTL N VG KV+I + K QTTR +RGIV+ + QIV +DTPG+ Sbjct: 14 RAGFACLVGRPNAGKSTLTNALVGDKVAITSSKPQTTRHTIRGIVTRPDGQIVLVDTPGL 73 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK----RSSRLILI 136 + + + + T+ D++ + + +++ + K++A+ R ++ + Sbjct: 74 HKPRTLLGERLNDVVRETLLDVDVIGFCLPADQKIGPGDQFIAKDLAELQRVRKRPVVAL 133 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + K D V ERL E ++L SA G DDV N L LP +P +Y D Sbjct: 134 VTKTDTVDRERLAEHLIEVDRLGEWAAIVPCSAVSGKQVDDVANVLLGYLPESPQLYPDD 193 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQVIYVE 251 ++D AE+ RE + E+P+S VV E+ ++D + +R I+VE Sbjct: 194 VLTDESDTVMIAELIREAALEGVRDELPHSLAVVVEEMVPREDRPADKPLMDVRVNIFVE 253 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 RPSQK I++G+ G ++ + A++ I ++L Q V+L L VKV KDW DPK Sbjct: 254 RPSQKAIIIGRGGSRLREVGTTAREGIEKLLGQRVYLDLHVKVAKDWQRDPK 305 >gi|260598949|ref|YP_003211520.1| GTPase Era [Cronobacter turicensis z3032] gi|260218126|emb|CBA32923.1| GTP-binding protein era homolog [Cronobacter turicensis z3032] Length = 301 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 163/290 (56%), Gaps = 13/290 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E E Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM + + S+I ++V VV+ R + +L ++ + +IL +NK+D Sbjct: 69 EEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAINKVD 127 Query: 142 CVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 V+ ++AE+ L F+ + F+ +SA G D + + + LP A + Sbjct: 128 NVQ-----DKAELLPHLQFLGSQMNFLDIVPLSAETGMNVDTIASIVRKHLPEAIHHFPE 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D +EI REKL L E+PYS V E++ + G I +I VER Q Sbjct: 183 DYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILVEREGQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 KK+++G G IKTI +EA+K++ ++ E PVHL L+VKV+ W D + Sbjct: 243 KKMVIGNKGAKIKTIGIEARKDMQDMFEAPVHLELWVKVKSGWADDERAL 292 >gi|257068878|ref|YP_003155133.1| GTP-binding protein Era [Brachybacterium faecium DSM 4810] gi|256559696|gb|ACU85543.1| GTP-binding protein Era [Brachybacterium faecium DSM 4810] Length = 313 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 161/300 (53%), Gaps = 17/300 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG N GKSTL N VG KV+I + K QTTR +RGIV+ E+QI+ +DTPG+ Sbjct: 7 RSGFVALVGRPNVGKSTLTNALVGEKVAITSTKPQTTRRAIRGIVTRDEAQIILVDTPGV 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-----KRSSRLIL 135 + + + L T+ D+V + + +++ + +++A +R ++I Sbjct: 67 HRPRTLLGERLNDLVRETLGEVDVVGFCLPADQKIGPGDRFVAEDLAEMRSGRRGPKVIA 126 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 I+ KID V + L E ++L+ ++ +SA KG D +L + LP P +Y Sbjct: 127 IVTKIDLVGRDVLAEHLMSVDQLMGFDEIVPISAKKGEQIDVLLEVISRHLPEGPQLYPE 186 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVT----------EKWEE--KKDGSIL 243 DQ+++ +E+ RE + E+P+S VV + + E +G ++ Sbjct: 187 DQLTEETRDDRISELIREAALEGVRDELPHSIAVVVEEVVETDPGGDPFAEVAPGEGRLV 246 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +R ++VER SQK I++G+ G +K + A+ EI +L + VHL L +KV KDW DPK Sbjct: 247 VRATLFVERDSQKGIIIGRGGSRLKEVGSRARAEINALLGRKVHLDLRIKVAKDWQRDPK 306 >gi|225873315|ref|YP_002754774.1| GTP-binding protein Era [Acidobacterium capsulatum ATCC 51196] gi|225791445|gb|ACO31535.1| GTP-binding protein Era [Acidobacterium capsulatum ATCC 51196] Length = 346 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 107/311 (34%), Positives = 160/311 (51%), Gaps = 33/311 (10%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS----------EKES 70 RSG V++VG NAGKSTL+N G KV+IVT K QTTR+ + GIV + Sbjct: 2 RSGFVSIVGRPNAGKSTLLNALAGEKVAIVTSKPQTTRNRIHGIVEVPAQNTKAGKRPAA 61 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI----------- 119 QIVF+DTPG+ ++ + M++ + ++ DIV +VD+ R + + Sbjct: 62 QIVFVDTPGVHKPGNTLDRRMLQEVHAALETRDIVIWMVDASRRVALAEAAAAEGETKTQ 121 Query: 120 HDLLKE---------IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 DLL+ I K + L++NKID V E L ++L + F +SA Sbjct: 122 RDLLESNEDAFVFELIRKLDCPVFLVINKIDLVDRETLAPLIAELSRLHNFAEVFPISAR 181 Query: 171 KGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVV 230 K + D++L L LP + Q +D P AE+ RE++ + +E+PY+S V+ Sbjct: 182 KRNSLDELLAKLVDYLPEGQRYFPEGQFTDQPERFLVAELIRERILMETGEEVPYASAVI 241 Query: 231 TEKWEE---KKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVH 287 E++EE + + I IY ERP QK I++GK G +K I A+KEI +L V+ Sbjct: 242 IEQYEEPVSQTNPLTRIAAAIYCERPGQKAILIGKGGSKLKEIGASARKEIESLLGTRVY 301 Query: 288 LILFVKVQKDW 298 L L VKV+ W Sbjct: 302 LELHVKVKDRW 312 >gi|257064001|ref|YP_003143673.1| GTP-binding protein Era [Slackia heliotrinireducens DSM 20476] gi|256791654|gb|ACV22324.1| GTP-binding protein Era [Slackia heliotrinireducens DSM 20476] Length = 301 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 159/284 (55%), Gaps = 4/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V LVG NAGKSTL+N VG KV+I ++ QTTR IV+ + QI+ +DTPG+ Sbjct: 6 KSGFVTLVGRPNAGKSTLINAVVGHKVAITSNTAQTTRHRFSAIVTRDDMQIIMVDTPGL 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILILNK 139 D+ + + + ++ D+V +++D + + + ++ + + ILIL K Sbjct: 66 HKPHDALGQELNTSAIKAMEDVDVVAMLIDCSKPIGRGDEWVAAQVNEVHAPHKILILTK 125 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V+P+ + EQ + A +L ++ ++SA G + + LP P + D + Sbjct: 126 ADLVEPKVIEEQMKAAKRLARWDEIVVLSAKTGKNVSGFEEAVATWLPEGPKWFPDDMDT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P+ AE REK+ E+P+S VVTE ++E KKD I IYVER SQK Sbjct: 186 DQPLEVIVAEFIREKILRSFRDEVPHSIGVVTEDMQYERKKD-LYKIYATIYVERDSQKG 244 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK GQ IK I +EA+K++ ++L V+L L VK++K+W D Sbjct: 245 IIIGKGGQAIKQIGIEARKDLEQLLGCGVYLDLNVKIKKNWRRD 288 >gi|329117153|ref|ZP_08245870.1| ribosome biogenesis GTPase Era [Streptococcus parauberis NCFD 2020] gi|326907558|gb|EGE54472.1| ribosome biogenesis GTPase Era [Streptococcus parauberis NCFD 2020] Length = 299 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 163/281 (58%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNYVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVETVIFMVPADEKRGKGDDMIIERLKTAKIPVILVINKI 123 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V P++LLEQ + N++ F E +SA +G+ + ++ L L + DQI+ Sbjct: 124 DKVHPDQLLEQIDDFRNQMDFKE-VVPISALQGNNVNPLMEILKDNLEEGFQYFPEDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV E K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLHLTQQEIPHSVAVVIESMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 242 IIIGKQGAMLKKIGKMARRDIEVMLGDKVYLETWVKVKKNW 282 >gi|240172991|ref|ZP_04751649.1| GTP-binding protein Era [Mycobacterium kansasii ATCC 12478] Length = 303 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 153/291 (52%), Gaps = 8/291 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V LVG N GKSTL N VGAKV+I + + QTTR +RGIV + QI+ +DTPG+ Sbjct: 6 RSGFVCLVGRPNTGKSTLTNALVGAKVAITSMRPQTTRHTIRGIVHRENFQIILVDTPGL 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILN 138 + K + L +T D++ L + + + +L++I + L++I+ Sbjct: 66 HRPRTLLGKRLNDLVRATYAEVDVIGLCIPADEAIGPGDRWILEQIRSVAPGTTLVVIVT 125 Query: 139 KIDCVKPERLLEQ----AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 KID V +R+ Q E+ L + VSA G D +++ L LP P Y Sbjct: 126 KIDKVPKDRVAAQLVAVGELVENLPGSTEIVPVSAVTGAQVDVLVDVLAGALPPGPAYYP 185 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK--KDGSILIRQVIYVER 252 +++D P AE RE +H E+P+S VV + + +D I + V+YVER Sbjct: 186 DGELTDEPEEVLMAEFIREAALEGVHDELPHSLAVVIDDVSPRDGRDDLIDVHAVVYVER 245 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++GK G ++ + A+ +I ++L V+L L VKV K+W DPK Sbjct: 246 DSQKGIVIGKGGARLRQVGTAARGQIEKLLGTKVYLDLRVKVAKNWQRDPK 296 >gi|314962902|gb|EFT07002.1| GTP-binding protein Era [Propionibacterium acnes HL082PA1] Length = 342 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 42 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 101 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ EIA+ R LI + K Sbjct: 102 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAELPRRPTLIALATK 161 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 162 SDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVIASLLPEGPAYYP 221 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 222 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVHASLI 281 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 282 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPIHLDLQVKVLPNWQSDPK 335 >gi|315612998|ref|ZP_07887909.1| GTP-binding protein Era [Streptococcus sanguinis ATCC 49296] gi|315315108|gb|EFU63149.1| GTP-binding protein Era [Streptococcus sanguinis ATCC 49296] Length = 299 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 161/281 (57%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V P++LL Q + N++ F E +SA +G+ +++ L L + ADQI+ Sbjct: 124 DKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLIDILSENLEEGFQYFPADQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGAMLKKIGTMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|312898794|ref|ZP_07758182.1| GTP-binding protein Era [Megasphaera micronuciformis F0359] gi|310619956|gb|EFQ03528.1| GTP-binding protein Era [Megasphaera micronuciformis F0359] Length = 300 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 153/283 (54%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++D +SG VA+VG N GKSTL+NR + KV+IV+ K QTTR+ + I ++ E QI+FL Sbjct: 3 MKDQFKSGFVAVVGRPNVGKSTLINRIIRQKVTIVSDKAQTTRNKILCIHTDDECQIIFL 62 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI K + M ++S + D +V + + +L ++ + L Sbjct: 63 DTPGIHKPKHKLGRFMDDAAFSALHDIDAAVFLVAADEKRGPGDMFVLNKVKDAGVPVFL 122 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NK D V +++ ++L VSA G D V + L L P + Sbjct: 123 VINKTDKVDKKKIPAVIADYSQLYDFAGIIPVSALNGDNVDIVTDELKKILQPGPKYFPD 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D P +EI REKL +E+P++ V TE+ ++ + + IR +YVER SQ Sbjct: 183 DMITDQPERLLVSEIVREKLLRATREEVPHAVAVFTEEMAKRDNDKVYIRVTVYVERESQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K+I++GKNG +K I A+ EI ++L V L ++VKV+ DW Sbjct: 243 KRIVIGKNGAVLKEIGRYARTEIEQLLGSNVFLDIWVKVKPDW 285 >gi|289167813|ref|YP_003446082.1| GTPase/GTP-binding protein Era [Streptococcus mitis B6] gi|288907380|emb|CBJ22217.1| GTPase/GTP-binding protein Era [Streptococcus mitis B6] Length = 299 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 104/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + ADQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLDEGFQYFPADQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|77411686|ref|ZP_00788025.1| GTP-binding protein Era [Streptococcus agalactiae CJB111] gi|77162258|gb|EAO73230.1| GTP-binding protein Era [Streptococcus agalactiae CJB111] Length = 299 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 124 DKVHPDQLLEQIDDFRSQMDFKEVVPISALQGNNVSTLIKLLTDNLEEGFQYFPEDQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 184 HPERFLVSEMVREKVLHLTQQEVPHSVAVVVESMKRDEETD-KVHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 243 IIGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNW 282 >gi|157151336|ref|YP_001450014.1| GTP-binding protein Era [Streptococcus gordonii str. Challis substr. CH1] gi|3334174|sp|O24756|ERA_STRGC RecName: Full=GTPase Era gi|2627217|dbj|BAA23582.1| GTP-binding protein [Streptococcus gordonii] gi|157076130|gb|ABV10813.1| GTP-binding protein Era [Streptococcus gordonii str. Challis substr. CH1] Length = 299 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 164/281 (58%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVEAAYSTLREVDTVLFMVPAD-EPRGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LL Q + + + ++ +SA +G+ +++ L L + DQI+ Sbjct: 123 IDKVHPDQLLAQIDDFRQQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPEDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ + +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLMLTREEIPHSVAVVIDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGSMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|225018650|ref|ZP_03707842.1| hypothetical protein CLOSTMETH_02600 [Clostridium methylpentosum DSM 5476] gi|224948558|gb|EEG29767.1| hypothetical protein CLOSTMETH_02600 [Clostridium methylpentosum DSM 5476] Length = 310 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 159/280 (56%), Gaps = 2/280 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RS +A+VG N GKS+L+N G K++IVT++ QTTR+ + G+++++E+Q VF+DTPG Sbjct: 20 TRSAFIAIVGKPNVGKSSLLNALTGHKIAIVTNRPQTTRTRITGVLTQEETQYVFIDTPG 79 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + A++ + M++ ++ D LVV+ E+ DL++ +L +NK Sbjct: 80 LLKARNKLGEKMVKTVRESVADVDAAVLVVEPTGEVNPAELDLIEGFKSNRMPAVLAINK 139 Query: 140 IDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID ++ E L+E+ L +SA + G D +L L +P + D + Sbjct: 140 IDILQNKELLIERIAKFQDLYEFSAVVPISALERDGIDALLGELSKFAIESPHYFPDDAV 199 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D AE+ REKL L+L +EIP+ + V E +EKK G + + VIY ER + K + Sbjct: 200 TDQHERVLAAEMVREKLLLNLREEIPHGTAVTVETMKEKK-GILHVDAVIYCERENHKGM 258 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I+ EA+ E+ + + VHL +VKV++DW Sbjct: 259 IIGKGGSMLKKIASEARAELEDFFQIQVHLQCWVKVKEDW 298 >gi|94989900|ref|YP_598000.1| GTP-binding protein Era [Streptococcus pyogenes MGAS10270] gi|189037675|sp|Q1JI67|ERA_STRPD RecName: Full=GTPase Era gi|94543408|gb|ABF33456.1| GTP-binding protein era [Streptococcus pyogenes MGAS10270] Length = 298 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 123 DKVHPDQLLEQIDDFRSQMDFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 183 HPERFLVSEMIREKVLHFTQQEVPHSVAVVVESMKRDEETD-KVHIRATIMVERDSQKGI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 242 IIGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNW 281 >gi|83644633|ref|YP_433068.1| GTP-binding protein Era [Hahella chejuensis KCTC 2396] gi|83632676|gb|ABC28643.1| GTP-binding protein Era [Hahella chejuensis KCTC 2396] Length = 304 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 168/292 (57%), Gaps = 6/292 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q+NSR G VA+VG N GKSTL+N +G K+SI + K QTTR + GI +E + Q +++D Sbjct: 8 QENSRCGYVAIVGRPNVGKSTLLNHILGQKISITSKKPQTTRHQILGIKTEGDYQAIYVD 67 Query: 77 TPGIFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++++ + S S IK AD++ VVD R + + + +L +IAK + IL Sbjct: 68 TPGLHQLDKKALNRVLNKASSSAIKDADVIVFVVDRKRWTEEDDY-VLSKIAKVNRPRIL 126 Query: 136 ILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++NK+D ++ + LL + K+ + +SA +G D + + LP + Sbjct: 127 VINKVDKLENKDDLLPFIDKVQKMCEFQHIIPLSALRGLNIDRLEAVINEMLPQGIHFFP 186 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 DQI+D EI REK+ L E+PY V E++ K++G++L I +I VER Sbjct: 187 EDQITDRSERFMAVEIIREKVMRQLGNEVPYEIAVEIEQF--KREGALLRISALILVERE 244 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKKI++G+ G+ IK I +A+K++ ++ E V L +VKV+ W + + Sbjct: 245 GQKKIVIGQKGERIKRIGSDARKDMEKLFESKVMLETWVKVKSGWSDNERAL 296 >gi|15674592|ref|NP_268766.1| GTP-binding protein Era [Streptococcus pyogenes M1 GAS] gi|71910203|ref|YP_281753.1| GTP-binding protein Era [Streptococcus pyogenes MGAS5005] gi|81175288|sp|P0C0B9|ERA_STRP1 RecName: Full=GTPase Era gi|13621702|gb|AAK33487.1| GTP-binding protein (GTPase) [Streptococcus pyogenes M1 GAS] gi|71852985|gb|AAZ51008.1| GTP-binding protein homolog [Streptococcus pyogenes MGAS5005] Length = 298 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 161/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 123 DKVHPDQLLEQIDDFHSQMDFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 183 HPERFLVSEMVREKVLHLTQQEVPHSVAVVVESMKRDEETD-KVHIRATIMVERDSQKGI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 242 IIGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNW 281 >gi|312868217|ref|ZP_07728417.1| ribosome biogenesis GTPase Era [Streptococcus parasanguinis F0405] gi|322389989|ref|ZP_08063528.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 903] gi|311095962|gb|EFQ54206.1| ribosome biogenesis GTPase Era [Streptococcus parasanguinis F0405] gi|321143302|gb|EFX38741.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 903] Length = 299 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 159/280 (56%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LL Q + + ++ +SA +G+ +++ L L + ADQI+D Sbjct: 124 DKVHPDQLLAQIDDFRSQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK I Sbjct: 184 HPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+K+I +L V L +VKV+K+W Sbjct: 243 VIGKGGAMLKKIGTLARKDIELMLGDKVFLETWVKVKKNW 282 >gi|324993803|gb|EGC25722.1| GTP-binding protein Era [Streptococcus sanguinis SK405] gi|324994878|gb|EGC26791.1| GTP-binding protein Era [Streptococcus sanguinis SK678] gi|327463077|gb|EGF09398.1| GTP-binding protein Era [Streptococcus sanguinis SK1] gi|327474678|gb|EGF20083.1| GTP-binding protein Era [Streptococcus sanguinis SK408] gi|327490236|gb|EGF22024.1| GTP-binding protein Era [Streptococcus sanguinis SK1058] Length = 299 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LL Q + + + ++ +SA +G+ +++ L L + DQI+D Sbjct: 124 DKVHPDQLLAQIDDFRQQMDFKEIVPISALQGNNVSYLIDILSENLEEGFQYFPEDQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ + +EIP+S VV + K +E+ D + IR I VER SQK I Sbjct: 184 HPERFLVSEMIREKVLMLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 243 IIGKGGSMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|319745497|gb|EFV97801.1| GTP-binding protein Era [Streptococcus agalactiae ATCC 13813] Length = 314 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 19 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 78 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 79 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 138 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 139 DKVHPDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLIKLLTDNLEEGFQYFPEDQITD 198 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 199 HPERFLVSEMVREKVLHLTQQEVPHSVAVVVESMKRDEETD-KVHIRATIMVERDSQKGI 257 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 258 IIGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNW 297 >gi|108804343|ref|YP_644280.1| GTP-binding protein Era [Rubrobacter xylanophilus DSM 9941] gi|108765586|gb|ABG04468.1| GTP-binding protein Era [Rubrobacter xylanophilus DSM 9941] Length = 301 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 156/283 (55%), Gaps = 7/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTLVNR VG K+SI++ + QTTRS +RG+ + Q VF+DTPG Sbjct: 9 RSGFVAVVGRPNVGKSTLVNRLVGQKISIISSRPQTTRSPIRGVRNGPGYQAVFVDTPGS 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD--LLKEIAKRSSRLILIL 137 +D+ M ++ +D+V ++D S + V D + +A+ + I + Sbjct: 69 QKPRDTLRARMQERVLDSLSESDVVLFMLDASQAKGGVGRGDRFVADLVARSRTPAIAAI 128 Query: 138 NKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK+D + P R L + L E F++SAT G + +++ + LP P + Sbjct: 129 NKVDLL-PRRDDALPIVDEVRGLADWEDVFLISATAGTNIEPLMDAVVRLLPQGPRYFPE 187 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 ++D P AE REK L +E+P++ V ++ E K D ++ I +I+VERPSQ Sbjct: 188 GVVTDYPETLILAEYIREKALEVLREEVPHAVAVEIDEVERKGDLTV-IYAIIHVERPSQ 246 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + I+LGK G+ IK I EA++++ +L ++L L VKV W Sbjct: 247 RMIVLGKGGRTIKRIGTEARRDVERLLGTRIYLDLKVKVSPGW 289 >gi|306829343|ref|ZP_07462533.1| GTP-binding protein Era [Streptococcus mitis ATCC 6249] gi|322374470|ref|ZP_08048984.1| GTP-binding protein Era [Streptococcus sp. C300] gi|304428429|gb|EFM31519.1| GTP-binding protein Era [Streptococcus mitis ATCC 6249] gi|321279970|gb|EFX57009.1| GTP-binding protein Era [Streptococcus sp. C300] Length = 299 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EPRGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + ADQI Sbjct: 123 IDKVHPDQLLAQIDDFRNQMDFKE-IVPISALQGNNVSRLIDILSENLEEGFQYFPADQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGTMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|283832042|ref|ZP_06351783.1| GTP-binding protein Era [Citrobacter youngae ATCC 29220] gi|291071661|gb|EFE09770.1| GTP-binding protein Era [Citrobacter youngae ATCC 29220] Length = 301 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 162/295 (54%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKTYCGFIAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D V + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTVAGIVRKHLPEAI 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFISNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|297171661|gb|ADI22655.1| GTPase [uncultured Gemmatimonadales bacterium HF0500_22O06] Length = 317 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 159/284 (55%), Gaps = 11/284 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+G V LVG N GKSTL+N+ VG +SIVT K QTT V GI+S Q++FLDTPG Sbjct: 17 TRTGYVTLVGRPNVGKSTLLNQLVGEHLSIVTPKAQTTWQRVTGILSVGTDQMIFLDTPG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLI 134 + AKD + M+ + + ADI L++DS RE I L ++ ++ L Sbjct: 77 LLEAKDMLQRAMLGAALEALAEADITILLIDSTTKPDSREAASTIEAL----SETNAPLH 132 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 + LNK+D E + A++ + +S+ G G D +L L + LP+ P++Y Sbjct: 133 IALNKVDIADEEAIRAWEAWADR-ELSGSIYQLSSLTGKGVDALLEGLRADLPVGPFLYP 191 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 + I+ + F AE+ RE +F H+EIPYS+ E++ E +D + ++ I+VER S Sbjct: 192 EEDIASDSVRFFVAELVRETIFELYHQEIPYSTFCHVEEFRENQD-PVYVQVQIFVERES 250 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G+ I+ + A+ +I ++ V+L L+VK K W Sbjct: 251 QKGILIGKKGRAIRELGERARMKIEHFIDMRVYLDLWVKPLKAW 294 >gi|289425268|ref|ZP_06427045.1| GTP-binding protein Era [Propionibacterium acnes SK187] gi|289154246|gb|EFD02934.1| GTP-binding protein Era [Propionibacterium acnes SK187] Length = 340 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 40 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 99 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ EIA+ R LI + K Sbjct: 100 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAELPRRPTLIALATK 159 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 160 SDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVIASLLPEGPAYYP 219 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 220 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVYASLI 279 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 280 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPIHLDLQVKVLPNWQSDPK 333 >gi|91217173|ref|ZP_01254135.1| putative GTP-binding protein [Psychroflexus torquis ATCC 700755] gi|91184773|gb|EAS71154.1| putative GTP-binding protein [Psychroflexus torquis ATCC 700755] Length = 273 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/265 (37%), Positives = 146/265 (55%), Gaps = 2/265 (0%) Query: 39 VNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 +N FVG K+SI+T K QTTR + GIV+ ++ Q+V DTPGI M+ S Sbjct: 1 MNAFVGEKLSIITSKAQTTRHRILGIVNGEDFQMVLSDTPGIIKPAYGLQNSMMDFVKSA 60 Query: 99 IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKL 158 + AD++ +V+ E + ++ ++L+LNKID E LL Q + + Sbjct: 61 FQDADVLLYLVEIG-EKALKDESFFTKLQHAEMPVLLLLNKIDKGNEELLLSQQKHWQEQ 119 Query: 159 VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLH 218 + + F +SA + G +V N + LP +P Y DQ++D P F E REK+ +H Sbjct: 120 LPNAEIFAISALENFGVTEVFNRILELLPESPAFYPKDQLTDKPERFFVNEKIREKILIH 179 Query: 219 LHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEI 278 KEIPYS V TE +EE D I IR VI VER SQK I+LG G IK + E++K++ Sbjct: 180 YKKEIPYSVEVETESFEE-SDSIIHIRSVIMVERESQKAIILGHKGSAIKRVGTESRKDL 238 Query: 279 AEILEQPVHLILFVKVQKDWGHDPK 303 + ++ +HL +VKV K+W +D K Sbjct: 239 EKFFDKKIHLETYVKVNKNWRNDGK 263 >gi|163856075|ref|YP_001630373.1| GTP-binding protein Era [Bordetella petrii DSM 12804] gi|226741170|sp|A9IIJ3|ERA_BORPD RecName: Full=GTPase Era gi|163259803|emb|CAP42104.1| GTP-binding protein [Bordetella petrii] Length = 296 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 102/285 (35%), Positives = 169/285 (59%), Gaps = 15/285 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL N +G+K+SIV+ K QTTR + G+++ + Q VF+DTPG Sbjct: 7 RTGFVAVVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPG- 65 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILI 136 F + + +++M R+ + D+V VV++ + + + LL + + R IL+ Sbjct: 66 FQTRHGGAMNRMMNRVVTQALAEVDVVVHVVEAGKWTDGDAKLLPLLPD----ARRTILV 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++KID VK R E +K+V + VSA K D +L+ + + LP ++ Sbjct: 122 VSKIDAVK--RRDELFAFVSKIVAQHPYDAVVPVSAVKSQQLDQLLDEIAARLPEGEPLF 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D ++D PM AE+ REK+F + E+PY VV E+WEE D ++ + + VER Sbjct: 180 EEDTLTDRPMRFIAAELLREKIFRLVGDELPYGCTVVIEQWEE-TDKNLRVAACVVVERD 238 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S + I+LG G ++K I+ EA+++IA+++++PVHL +++KV+K W Sbjct: 239 SHRPILLGAGGVHMKRIATEARQDIAKLVDKPVHLEVYIKVRKGW 283 >gi|315108429|gb|EFT80405.1| GTP-binding protein Era [Propionibacterium acnes HL030PA2] Length = 342 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 42 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 101 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ EIA+ R LI + K Sbjct: 102 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAELPRRPTLIALATK 161 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 162 SDLVSKARMAEHLAAIDKLQREVGIEFVEVVPCSAVSGEQIDEVRDVIASLLPEGPAYYP 221 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 222 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVYASLI 281 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 282 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPIHLDLQVKVLPNWQSDPK 335 >gi|159027574|emb|CAO86947.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 318 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 157/281 (55%), Gaps = 6/281 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + ++G N GKSTL+N+ VG K++I + QTTR+ +RGIV+++ SQ++F+DTPGI Sbjct: 25 KSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTDERSQMIFVDTPGI 84 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K++++ + + I D+V VVDS L + + K + IL LNK Sbjct: 85 HKPHHELGKVLVKNAENAINSVDLVLFVVDSSNFLGGGDRYIADLLTKNQTPTILGLNKA 144 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D +PE E + + + + E + + SA +G G ++ N L +L + P+ Y D Sbjct: 145 DQ-QPED-PEPIDDSYRTLAAENNWPLLKFSALEGTGIPELQNLLIDSLEVGPYYYPPDL 202 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P E+ RE++ L +EIP+S VV E+ EE + I VER SQK Sbjct: 203 VTDQPERFIMGELIREQILLQTRQEIPHSVAVVIERVEETP-ALTKVFAAINVERASQKG 261 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++G+NG +K I A+ I +++ V+L LFVKV+ W Sbjct: 262 IVIGQNGSMLKAIGSSARSAIQKLIAGEVYLKLFVKVEPKW 302 >gi|332883260|gb|EGK03543.1| GTP-binding protein Era [Dysgonomonas mossii DSM 22836] Length = 293 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N VG KVSI+T K QTTR + GIV+ E QIV+ DTPG+ Sbjct: 3 KSGFVNIVGNPNVGKSTLMNLLVGEKVSIITSKAQTTRHRILGIVNTDEYQIVYSDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M+ S S + AD++ + D ++ N + LK++ + ++L++NKI Sbjct: 63 LRPNYKLQESMLNFSESALSDADVLLYMTDVVEKIDKN-EEFLKKVQGVQAPVLLLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L +L+ + + +SA D V + +P +P + D ++D Sbjct: 122 DQTNQKELEALVLRWKELLPNAEIYPISALNKFNADVVKKRIIDLIPESPPYFEKDALTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPYS VV E+++E+KD I IR +I VER +QK I++ Sbjct: 182 RPARFFVTEIIREKILLYYQKEIPYSVEVVVEEFKEEKD-IINIRALIIVERDTQKGIVI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K + A+K+I ++ V L +FVKV+KDW Sbjct: 241 GHQGAALKKLGTMARKDIERFFDKKVFLQIFVKVEKDW 278 >gi|22537642|ref|NP_688493.1| GTP-binding protein Era [Streptococcus agalactiae 2603V/R] gi|25011601|ref|NP_735996.1| GTP-binding protein Era [Streptococcus agalactiae NEM316] gi|76787745|ref|YP_330131.1| GTP-binding protein Era [Streptococcus agalactiae A909] gi|77405197|ref|ZP_00782295.1| GTP-binding protein Era [Streptococcus agalactiae H36B] gi|77413995|ref|ZP_00790168.1| GTP-binding protein Era [Streptococcus agalactiae 515] gi|81453614|sp|Q8DYI1|ERA_STRA5 RecName: Full=GTPase Era gi|81744499|sp|Q8E443|ERA_STRA3 RecName: Full=GTPase Era gi|123601489|sp|Q3K022|ERA_STRA1 RecName: Full=GTPase Era gi|22534528|gb|AAN00366.1|AE014260_22 GTP-binding protein Era [Streptococcus agalactiae 2603V/R] gi|24413141|emb|CAD47219.1| Unknown [Streptococcus agalactiae NEM316] gi|76562802|gb|ABA45386.1| GTP-binding protein Era [Streptococcus agalactiae A909] gi|77159975|gb|EAO71113.1| GTP-binding protein Era [Streptococcus agalactiae 515] gi|77176199|gb|EAO78970.1| GTP-binding protein Era [Streptococcus agalactiae H36B] Length = 299 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 124 DKVHPDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLIKLLTDNLEEGFQYFPEDQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 184 HPERFLVSEMVREKVLHLTQQEVPHSVAVVVESMKRDEETD-KVHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 243 IIGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNW 282 >gi|259907678|ref|YP_002648034.1| GTP-binding protein Era [Erwinia pyrifoliae Ep1/96] gi|224963300|emb|CAX54785.1| GTP-binding protein [Erwinia pyrifoliae Ep1/96] gi|283477529|emb|CAY73445.1| GTP-binding protein Era [Erwinia pyrifoliae DSM 12163] Length = 301 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 157/285 (55%), Gaps = 3/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E + Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I ++V VV+ R + +L ++ ++L +NK+D Sbjct: 69 EEKRAINRLMNRAASSSIGDVEMVIFVVEGTR-WTADDEMVLNKLKDGKVPVLLAINKVD 127 Query: 142 -CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + LL + + + +SA KG D + + + LP A + D I+D Sbjct: 128 NIIDKSILLPHLQFLGQQMNFMDVVPISAEKGSNVDTIASIVRKRLPEAEHHFPEDYITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +EI REKL L E+PYS V E++ + G + I +I VER QKK+++ Sbjct: 188 RSQRFMASEIIREKLMRFLGAELPYSVTVEIEQFVTNERGGLTINGLILVEREGQKKMVI 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 G G IKTI +EA++++ E+LE VHL L+VKV+ W D + Sbjct: 248 GNKGAKIKTIGIEARRDMEEMLEAKVHLELWVKVKSGWADDERAL 292 >gi|300788458|ref|YP_003768749.1| GTP-binding protein Era [Amycolatopsis mediterranei U32] gi|299797972|gb|ADJ48347.1| GTP-binding protein Era [Amycolatopsis mediterranei U32] Length = 303 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 156/292 (53%), Gaps = 9/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG KV+I + K QTTR +RGIV +++Q+V +DTPG+ Sbjct: 5 RSGFACFVGRPNAGKSTLTNALVGTKVAITSSKPQTTRHAIRGIVHREDAQLVLIDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKR----SSRL 133 + + + + +T D+V V ++ ++ I L++IA R + + Sbjct: 65 HRPRTLLGERLNDIVHTTWSEVDVVGFCVPANEKIGPGDKFIAAELQKIALRKNGMGTPV 124 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 + I+ K D V+P+++ EQ +++ + VSA G D + + L LP P +Y Sbjct: 125 LGIVTKTDLVQPQQVAEQLLALQEVMDFAELIPVSAVDGFQVDALADLLVGKLPEGPQLY 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVE 251 +++D P AE+ RE + E+P+S V E+ E +D I + ++VE Sbjct: 185 PGGELTDEPEQTLVAELIREAALEGVRDELPHSIAVTVEEMLPREGRDDLIDVHAFLFVE 244 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 RPSQK I+LG G+ ++ + A+K I +L V+L L +KV K+W DP+ Sbjct: 245 RPSQKGIILGHKGERLREVGAAARKNIEALLGSKVYLDLHIKVAKEWQRDPR 296 >gi|313764555|gb|EFS35919.1| GTP-binding protein Era [Propionibacterium acnes HL013PA1] gi|313792243|gb|EFS40344.1| GTP-binding protein Era [Propionibacterium acnes HL110PA1] gi|313801808|gb|EFS43042.1| GTP-binding protein Era [Propionibacterium acnes HL110PA2] gi|313816096|gb|EFS53810.1| GTP-binding protein Era [Propionibacterium acnes HL059PA1] gi|313827675|gb|EFS65389.1| GTP-binding protein Era [Propionibacterium acnes HL063PA2] gi|313838634|gb|EFS76348.1| GTP-binding protein Era [Propionibacterium acnes HL086PA1] gi|314915551|gb|EFS79382.1| GTP-binding protein Era [Propionibacterium acnes HL005PA4] gi|314918495|gb|EFS82326.1| GTP-binding protein Era [Propionibacterium acnes HL050PA1] gi|314919982|gb|EFS83813.1| GTP-binding protein Era [Propionibacterium acnes HL050PA3] gi|314931995|gb|EFS95826.1| GTP-binding protein Era [Propionibacterium acnes HL067PA1] gi|314955864|gb|EFT00264.1| GTP-binding protein Era [Propionibacterium acnes HL027PA1] gi|314958345|gb|EFT02448.1| GTP-binding protein Era [Propionibacterium acnes HL002PA1] gi|314968021|gb|EFT12120.1| GTP-binding protein Era [Propionibacterium acnes HL037PA1] gi|315078117|gb|EFT50168.1| GTP-binding protein Era [Propionibacterium acnes HL053PA2] gi|315098436|gb|EFT70412.1| GTP-binding protein Era [Propionibacterium acnes HL059PA2] gi|315101207|gb|EFT73183.1| GTP-binding protein Era [Propionibacterium acnes HL046PA1] gi|327450881|gb|EGE97535.1| GTP-binding protein Era [Propionibacterium acnes HL087PA3] gi|327453042|gb|EGE99696.1| GTP-binding protein Era [Propionibacterium acnes HL092PA1] gi|327453770|gb|EGF00425.1| GTP-binding protein Era [Propionibacterium acnes HL083PA2] gi|328754301|gb|EGF67917.1| GTP-binding protein Era [Propionibacterium acnes HL087PA1] gi|328754447|gb|EGF68063.1| GTP-binding protein Era [Propionibacterium acnes HL025PA2] Length = 342 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 42 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 101 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ EIA+ R LI + K Sbjct: 102 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAELPRRPTLIALATK 161 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 162 SDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVIASLLPEGPAYYP 221 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 222 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVYASLI 281 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 282 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPIHLDLQVKVLPNWQSDPK 335 >gi|19745599|ref|NP_606735.1| GTP-binding protein Era [Streptococcus pyogenes MGAS8232] gi|21909873|ref|NP_664141.1| GTP-binding protein Era [Streptococcus pyogenes MGAS315] gi|28896432|ref|NP_802782.1| GTP-binding protein Era [Streptococcus pyogenes SSI-1] gi|50913761|ref|YP_059733.1| GTP-binding protein Era [Streptococcus pyogenes MGAS10394] gi|56808804|ref|ZP_00366518.1| COG1159: GTPase [Streptococcus pyogenes M49 591] gi|71903042|ref|YP_279845.1| GTP-binding protein Era [Streptococcus pyogenes MGAS6180] gi|94988021|ref|YP_596122.1| GTP-binding protein Era [Streptococcus pyogenes MGAS9429] gi|94991907|ref|YP_600006.1| GTP-binding protein Era [Streptococcus pyogenes MGAS2096] gi|139474287|ref|YP_001129003.1| GTP-binding protein Era [Streptococcus pyogenes str. Manfredo] gi|209558959|ref|YP_002285431.1| GTP-binding protein Era [Streptococcus pyogenes NZ131] gi|306827874|ref|ZP_07461142.1| GTP-binding protein Era [Streptococcus pyogenes ATCC 10782] gi|54037044|sp|P64088|ERA_STRP8 RecName: Full=GTPase Era gi|54040764|sp|P64087|ERA_STRP3 RecName: Full=GTPase Era gi|73919338|sp|Q5XDG3|ERA_STRP6 RecName: Full=GTPase Era gi|123640374|sp|Q48UW6|ERA_STRPM RecName: Full=GTPase Era gi|189037673|sp|Q1JD46|ERA_STRPB RecName: Full=GTPase Era gi|189037674|sp|Q1JN21|ERA_STRPC RecName: Full=GTPase Era gi|189037677|sp|A2RG20|ERA_STRPG RecName: Full=GTPase Era gi|226741243|sp|B5XK74|ERA_STRPZ RecName: Full=GTPase Era gi|19747725|gb|AAL97234.1| putative GTP-binding protein [Streptococcus pyogenes MGAS8232] gi|21904060|gb|AAM78944.1| putative GTP-binding protein [Streptococcus pyogenes MGAS315] gi|28811683|dbj|BAC64615.1| putative GTP binding protein [Streptococcus pyogenes SSI-1] gi|50902835|gb|AAT86550.1| GTP-binding protein era [Streptococcus pyogenes MGAS10394] gi|71802137|gb|AAX71490.1| putative GTP-binding protein [Streptococcus pyogenes MGAS6180] gi|94541529|gb|ABF31578.1| GTP-binding protein [Streptococcus pyogenes MGAS9429] gi|94545415|gb|ABF35462.1| GTP-binding protein era [Streptococcus pyogenes MGAS2096] gi|134272534|emb|CAM30799.1| GTP-binding protein Era homolog [Streptococcus pyogenes str. Manfredo] gi|209540160|gb|ACI60736.1| GTP-binding protein Era [Streptococcus pyogenes NZ131] gi|304429922|gb|EFM32963.1| GTP-binding protein Era [Streptococcus pyogenes ATCC 10782] Length = 298 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 123 DKVHPDQLLEQIDDFRSQMDFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 183 HPERFLVSEMVREKVLHLTQQEVPHSVAVVVESMKRDEETD-KVHIRATIMVERDSQKGI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 242 IIGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNW 281 >gi|13959677|sp|Q49768|ERA_MYCLE RecName: Full=GTPase Era Length = 300 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 159/290 (54%), Gaps = 8/290 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV-SEKESQIVFLDTPG 79 RSG V L+G N GKSTL N VG KV+I + K QTTR +RGIV E QIV +DTPG Sbjct: 5 RSGFVCLIGRPNTGKSTLTNALVGTKVAITSMKPQTTRHTIRGIVHREGNFQIVLVDTPG 64 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILI 136 + + K + L T D++ L + + I + ++ +A ++ L++I Sbjct: 65 LHRPRTLLGKRLNDLVRDTYTEVDLIGLCIPADEATGPGDRWIVNQIRSVAPKTI-LVVI 123 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 + KID V +RL Q + LV + VSA G D +++ L + LP P YSA Sbjct: 124 VTKIDKVPKDRLSAQLVAVSDLVADSAEIVPVSAVTGEQVDVLIDVLAAALPPGPAYYSA 183 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI--RQVIYVERP 253 +++D P AE+ RE + +H E+P+S VV ++ + LI V+YVERP Sbjct: 184 GELTDEPEELLMAELIREAVLEGVHDELPHSLAVVIDEVSPRAGRGDLIDVHAVLYVERP 243 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++GK+G ++ + + A+++I ++L ++L L V V K+W +PK Sbjct: 244 SQKGIVIGKSGARLREVGIAARRQIEKLLGTNIYLDLHVNVAKNWQRNPK 293 >gi|15827260|ref|NP_301523.1| GTP-binding protein Era [Mycobacterium leprae TN] gi|221229738|ref|YP_002503154.1| GTP-binding protein Era [Mycobacterium leprae Br4923] gi|466988|gb|AAA17174.1| B1937_F3_102 [Mycobacterium leprae] gi|13092809|emb|CAC30139.1| putative Era-family GTP-binding protein [Mycobacterium leprae] gi|219932845|emb|CAR70724.1| putative Era-family GTP-binding protein [Mycobacterium leprae Br4923] Length = 302 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 159/290 (54%), Gaps = 8/290 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV-SEKESQIVFLDTPG 79 RSG V L+G N GKSTL N VG KV+I + K QTTR +RGIV E QIV +DTPG Sbjct: 7 RSGFVCLIGRPNTGKSTLTNALVGTKVAITSMKPQTTRHTIRGIVHREGNFQIVLVDTPG 66 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILI 136 + + K + L T D++ L + + I + ++ +A ++ L++I Sbjct: 67 LHRPRTLLGKRLNDLVRDTYTEVDLIGLCIPADEATGPGDRWIVNQIRSVAPKTI-LVVI 125 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 + KID V +RL Q + LV + VSA G D +++ L + LP P YSA Sbjct: 126 VTKIDKVPKDRLSAQLVAVSDLVADSAEIVPVSAVTGEQVDVLIDVLAAALPPGPAYYSA 185 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI--RQVIYVERP 253 +++D P AE+ RE + +H E+P+S VV ++ + LI V+YVERP Sbjct: 186 GELTDEPEELLMAELIREAVLEGVHDELPHSLAVVIDEVSPRAGRGDLIDVHAVLYVERP 245 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++GK+G ++ + + A+++I ++L ++L L V V K+W +PK Sbjct: 246 SQKGIVIGKSGARLREVGIAARRQIEKLLGTNIYLDLHVNVAKNWQRNPK 295 >gi|320159556|ref|YP_004172780.1| GTP-binding protein era [Anaerolinea thermophila UNI-1] gi|319993409|dbj|BAJ62180.1| GTP-binding protein era homolog [Anaerolinea thermophila UNI-1] Length = 308 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 162/286 (56%), Gaps = 4/286 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NRF+G K++ V+ + QTTR GI++ ++Q+VF+DTPGI Sbjct: 10 KSGFVAVVGRPNVGKSTLMNRFLGQKIAAVSPRPQTTRRRQLGILTLPQAQMVFVDTPGI 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILI 136 + M +++ ++ AD+V +VD+ E ++ +L+ + + + ++L Sbjct: 70 HKPVHKLGEYMNQVALDALRDADVVLWLVDASVKPTDEDRLCAQRILEALGQNPANVLLA 129 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNK+D V ++ + + L+ +SAT G G D+L+ + LP P Y + Sbjct: 130 LNKMDQVPEDQRAGRLKGYQDLLSSAWVVWISATSGAGTQDLLDEILRRLPEGPPYYEEE 189 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 QI+DL A++ RE +HL E+P++ V ++++E+ + + I + +ER S K Sbjct: 190 QITDLYEREIAADLIREAALIHLKDEVPHAIAVRIDEYKERSEDTAYIAATLLLERESHK 249 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I++GK G+ +K I A+ EI + + V L L VKV ++W +P Sbjct: 250 PIVIGKGGEMLKRIGTTARLEIESMSGRKVFLDLRVKVMENWRDNP 295 >gi|16765900|ref|NP_461515.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992711|ref|ZP_02573807.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|194442527|ref|YP_002041843.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451061|ref|YP_002046642.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197261778|ref|ZP_03161852.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|20141303|sp|Q56057|ERA_SALTY RecName: Full=GTPase Era gi|226741232|sp|B4TE14|ERA_SALHS RecName: Full=GTPase Era gi|226741233|sp|B4T1F7|ERA_SALNS RecName: Full=GTPase Era gi|16421127|gb|AAL21474.1| GTPase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194401190|gb|ACF61412.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409365|gb|ACF69584.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197240033|gb|EDY22653.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329140|gb|EDZ15904.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247775|emb|CBG25603.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994706|gb|ACY89591.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159128|emb|CBW18642.1| GTP-binding protein era homolog [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913569|dbj|BAJ37543.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222715|gb|EFX47786.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130911|gb|ADX18341.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989507|gb|AEF08490.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 301 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 102/291 (35%), Positives = 164/291 (56%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKTYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCVKPE-RLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V+ + LL + +A+++ F++ +SA G D + + LP A + Sbjct: 123 VNKVDNVQEKVDLLPHLQFLASQMNFLD-IVPISAETGMNVDTIAGIVRKHLPEAIHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L E+PYS V E++ + G I +I VER Sbjct: 182 EDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILVEREG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|310764814|gb|ADP09764.1| GTP-binding protein Era [Erwinia sp. Ejp617] Length = 301 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 157/285 (55%), Gaps = 3/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E + Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I ++V VV+ R + +L ++ ++L +NK+D Sbjct: 69 EEKRAINRLMNRAASSSIGDVEMVIFVVEGTR-WTADDEMVLNKLKDGKVPVLLAINKVD 127 Query: 142 CVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + LL + + + +SA KG D + + + LP A + D I+D Sbjct: 128 NITDKSILLPHLQFLGQQMNFMDVVPISAEKGSNVDTIASIVRKRLPEAEHHFPEDYITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +EI REKL L E+PYS V E++ + G + I +I VER QKK+++ Sbjct: 188 RSQRFMASEIIREKLMRFLGAELPYSVTVEIEQFVTNERGGLTINGLILVEREGQKKMVI 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 G G IKTI +EA++++ E+ E VHL L+VKV+ W D + Sbjct: 248 GNKGAKIKTIGIEARRDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|307709149|ref|ZP_07645608.1| GTP-binding protein Era [Streptococcus mitis SK564] gi|307620095|gb|EFN99212.1| GTP-binding protein Era [Streptococcus mitis SK564] Length = 299 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 164/281 (58%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLDEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE-EKKDGSILIRQVIYVERPSQKK 257 +D P +E+ REK+ +EIP+S VV + + +K+ + IR I VER SQK Sbjct: 182 TDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDKETDKVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|332519776|ref|ZP_08396240.1| GTP-binding protein Era [Lacinutrix algicola 5H-3-7-4] gi|332044335|gb|EGI80529.1| GTP-binding protein Era [Lacinutrix algicola 5H-3-7-4] Length = 293 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 101/279 (36%), Positives = 157/279 (56%), Gaps = 4/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIV+ + Q+V DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGENFQVVLSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ S AD++ +V+ +ELK +I ++L+LNK Sbjct: 64 IKPAYELQASMMDFVKSAFDDADLLIYMVEIGEKELKD--EAFFNKITNAKIPVLLLLNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID +L EQ ++ V + +SA +G +V + + LP +P Y DQ++ Sbjct: 122 IDKSNQVQLEEQVQLWATKVPNAEIIAISALEGFNVKEVFDRIIELLPESPPFYPKDQLT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F E REK+ +H KEIPY+ + TE++ E+++ I +R VI VER +QK I+ Sbjct: 182 DKPERFFINETIREKILMHYKKEIPYAVEIDTEEFFEEEE-IIRVRSVIMVERETQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G +K + +EA+K++ + +HL L+VKV K+W Sbjct: 241 IGHKGSALKRVGVEARKDLETFFGKQIHLELYVKVNKNW 279 >gi|320534204|ref|ZP_08034727.1| GTP-binding protein Era [Actinomyces sp. oral taxon 171 str. F0337] gi|320133581|gb|EFW26006.1| GTP-binding protein Era [Actinomyces sp. oral taxon 171 str. F0337] Length = 392 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 12/302 (3%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +D R+G +VG NAGKSTL N VGAK++I + + QTTR VRG++ + +QIV Sbjct: 86 DFPED-FRAGFACIVGRPNAGKSTLTNALVGAKIAITSGRPQTTRHNVRGVIHQDNAQIV 144 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DTPG+ + K + L T+ D+V V ++ ++ + +++A+ + + Sbjct: 145 LVDTPGLHRPRTLLGKRLNDLVRETLTDVDVVVFCVPANEKIGPGDRFITRDLAELRTPV 204 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 + ++ K D V E L Q ++L VSA + D + L +PL+P +Y Sbjct: 205 VAVVTKADTVTREALAAQLLAVSELGEWADIVPVSAQRNEQIDVLKEVLLKYMPLSPPLY 264 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-----------GSI 242 +I+D P AE+ RE + E+P+S VV ++ + D G + Sbjct: 265 PTGEITDEPQQVMIAELVREAALEGVRDELPHSLAVVVDEIADPDDEREVGRIKGAGGRL 324 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 +R + VER SQK I++GK G+ +K + + A+K I E+L + V+L L V+ KDW DP Sbjct: 325 QVRVSLVVERDSQKAIIIGKGGRRLKEVGVTARKGIEELLGRKVYLDLHVRTAKDWQSDP 384 Query: 303 KC 304 K Sbjct: 385 KA 386 >gi|293365236|ref|ZP_06611953.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037] gi|307703775|ref|ZP_07640716.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037] gi|291316686|gb|EFE57122.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037] gi|307622610|gb|EFO01606.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037] Length = 299 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 160/281 (56%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + ++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIDRLKAAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V P++LL Q + N++ F E +SA +G+ +++ L L + ADQI+ Sbjct: 124 DKVHPDQLLAQIDDFRNQMDFKE-IVPISALQGNNVSRLIDILSENLEEGFQYFPADQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGAMLKKIGTMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|291279472|ref|YP_003496307.1| GTP-binding protein Era [Deferribacter desulfuricans SSM1] gi|290754174|dbj|BAI80551.1| GTP-binding protein Era [Deferribacter desulfuricans SSM1] Length = 297 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 165/281 (58%), Gaps = 6/281 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKSTL+NR +G KVSI+++K TTR+ ++GI + ++ QI+F+DTPGI Sbjct: 7 KSGFVSIIGRPNVGKSTLLNRLLGEKVSIISNKPNTTRTNIQGIKTGEDYQIIFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NAKD ++LM++ + ++ DIV L+V+ + ++ +L + K + L++NK+ Sbjct: 67 HNAKDKINRLMVQNALDSLDMVDIVYLMVEPDEFIGKEMNFILNVLKKYNGVKYLLINKV 126 Query: 141 DCVKPERLLEQAEIANKLV-FIEKTFM--VSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D R L IANK+ +++ ++ +SA KG D +++ LP ++ D Sbjct: 127 DKSTKTRAL---NIANKIFEYLDFKYVLPISALKGINIDKLISLTVEDLPEGEKIFDEDY 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+++P AE RE++F L E+PY + V E E++ D + I + R SQK Sbjct: 184 ITNIPEKLLIAEFVREQVFKILKDEVPYDTVVECELVEDRGDDLLYAACSIILSRESQKS 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ IK I ++++ + + V L L+VKV +W Sbjct: 244 IVIGKQGRTIKEIGRKSRENLEKFFGVKVFLDLWVKVVNNW 284 >gi|188533139|ref|YP_001906936.1| GTP-binding protein Era [Erwinia tasmaniensis Et1/99] gi|188028181|emb|CAO96039.1| GTP-binding protein [Erwinia tasmaniensis Et1/99] Length = 301 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 158/285 (55%), Gaps = 3/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E + Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I ++V VV+ R + +L ++ ++L +NK+D Sbjct: 69 EEKRAINRLMNRAASSSIGDVEMVIFVVEGTR-WTPDDEMVLNKLKDGKVPVLLAINKVD 127 Query: 142 CVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + LL + + + +SA KG+ D + N + LP A + + I+D Sbjct: 128 NITDKSILLPHLQFLGQQMNFMDVVPISAEKGNNVDTIANIVRKRLPEAEHHFPEEYITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +EI REKL L E+PYS V E++ + G + I +I VER QKK+++ Sbjct: 188 RSQRFMASEIIREKLMRFLGAELPYSVTVEIEQFLTNERGGLTINGLILVEREGQKKMVI 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 G G IKTI +EA++++ E+ E VHL L+VKV+ W D + Sbjct: 248 GNKGAKIKTIGIEARRDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|254514115|ref|ZP_05126176.1| GTP-binding protein Era [gamma proteobacterium NOR5-3] gi|219676358|gb|EED32723.1| GTP-binding protein Era [gamma proteobacterium NOR5-3] Length = 299 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 160/291 (54%), Gaps = 4/291 (1%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + + +R G VA+VG N GKSTL+N +G K+SI + K QTTR V GI + +Q++F+ Sbjct: 1 MSEKTRCGYVAIVGRPNVGKSTLLNHLLGQKLSITSRKPQTTRHQVLGIKTTDSAQMLFV 60 Query: 76 DTPGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPGI +D + ++ M R + + + DI +VVD E + + +L+ ++ ++ Sbjct: 61 DTPGIHGGEDRALNRFMNRTASAALAAVDIAVMVVDRG-EWRDDDERVLRSCVASNAPVL 119 Query: 135 LILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L++NK+D P +L + + +SA +G D + + LP P+++ Sbjct: 120 LVINKVDLEDNPNAILPSLQSLAERADFAALIPLSALRGRNLDVLEAEIVKRLPQGPFLF 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D+I+D AEI REK+ L E+PYS+ V E++ + G + I VI VER Sbjct: 180 EEDEITDRSTRFLVAEIVREKITRQLGDELPYSTTVEIEEYGHEA-GIVHISAVILVERK 238 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QK I++G+ G ++ I EA+++I ++E V L L+VKV+ W D + Sbjct: 239 GQKAILIGQKGSRLRQIGTEARQDIERLIESKVMLNLWVKVRSGWADDERA 289 >gi|45735814|dbj|BAD12850.1| putative GTP-binding protein ERG [Oryza sativa Japonica Group] Length = 437 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 163/291 (56%), Gaps = 11/291 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ S V +VGA NAGKS+L N VG KV+ V+ K TT + G++++ +QI F D Sbjct: 143 EEDQMSLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQICFFD 202 Query: 77 TPGIFNAKDS--YHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 TPG+ + + +R+ +WS+I D++ ++ D +R LK ++K I + + Sbjct: 203 TPGLMLGHHGLPHRDVTVRVESAWSSINLYDLLIVLFDVNRHLKTPDTRVVKLIKRLGAE 262 Query: 133 L------ILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + IL +NK+D V+ ++ LL+ A+ L E+ FMVS KG G D++ +L Sbjct: 263 VNPNQKRILCMNKVDLVEDKKDLLKVAKEFEDLPAYERYFMVSGLKGKGVKDLVQFLMEQ 322 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW +++ M + E+ REK+ H+H+EIPY W+E KDGS+ + Sbjct: 323 AVRRPWDEEPTTMTEEVMKTISLEVVREKMLDHIHQEIPYVIDHRLMDWKELKDGSLRVE 382 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 Q + SQ++I++GKNG I I +EA +E+ I ++ VHLIL V+V K Sbjct: 383 QHFIAPKQSQRQILVGKNGSKIGRIGIEANEELRSIFKRDVHLILQVRVAK 433 >gi|169351079|ref|ZP_02868017.1| hypothetical protein CLOSPI_01858 [Clostridium spiroforme DSM 1552] gi|169292141|gb|EDS74274.1| hypothetical protein CLOSPI_01858 [Clostridium spiroforme DSM 1552] Length = 296 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 162/283 (57%), Gaps = 1/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N + K++I++ QTTR+ ++GI ++ ++QI+F+DTPGI Sbjct: 3 KSGFVSIVGRPNVGKSTLLNCILETKLAIMSDVAQTTRNTIQGIYTDDQAQIIFMDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D M + ++I D+V + ++ ++ +++ + + + LIL+KI Sbjct: 63 HKPQDRLGTFMNSTALNSIFGVDLVLFLAPANEKIGRGDKYIIERLKEADGPVFLILSKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E L+ + + +L ++ +SA + + D +L + + LP Y D ++D Sbjct: 123 DTVSKEELVVKLQQWQELFDFKEIIPISAKENNNVDLLLKTIKNYLPEGNMYYPKDHLTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE REK+ +E+P+S +V E+ E ++G +I ++ +R SQK I++ Sbjct: 183 HPERFVMAEFIREKILYFTREEVPHSVAIVIERMLEDENGVEIIATIV-CDRKSQKGIIV 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 GK G IK I L A++E+ L+ PVHL LFVKV+ +W + K Sbjct: 242 GKQGAMIKKIRLNAQREMKRFLQVPVHLELFVKVENNWRNKQK 284 >gi|332875944|ref|ZP_08443730.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6014059] gi|323519011|gb|ADX93392.1| GTP-binding protein Era [Acinetobacter baumannii TCDC-AB0715] gi|332735810|gb|EGJ66851.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6014059] Length = 340 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/311 (32%), Positives = 169/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 23 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 82 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+ + + N +L+++ Sbjct: 83 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAQKWTQ-NDDLVLEKL 141 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D +R +L + KL+ + VSA +G + + + Sbjct: 142 KNADMPVILVINKADTFGDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKY 201 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 202 LPYQPPLYSIDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKT 261 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+RP QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 262 GRLKPACTYIDATIFVDRPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKV 321 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 322 KGGWSDDERAL 332 >gi|149006354|ref|ZP_01830066.1| GTP-binding protein Era [Streptococcus pneumoniae SP18-BS74] gi|169834294|ref|YP_001694414.1| GTP-binding protein Era [Streptococcus pneumoniae Hungary19A-6] gi|221231732|ref|YP_002510884.1| GTP-binding protein Era homolog [Streptococcus pneumoniae ATCC 700669] gi|307127480|ref|YP_003879511.1| GTP-binding protein Era [Streptococcus pneumoniae 670-6B] gi|307704699|ref|ZP_07641598.1| GTP-binding protein Era [Streptococcus mitis SK597] gi|307706467|ref|ZP_07643276.1| GTP-binding protein Era [Streptococcus mitis SK321] gi|322376464|ref|ZP_08050957.1| GTP-binding protein Era [Streptococcus sp. M334] gi|226741241|sp|B1IBC9|ERA_STRPI RecName: Full=GTPase Era gi|254783666|sp|B8ZP66|ERA_STRPJ RecName: Full=GTPase Era gi|147762131|gb|EDK69093.1| GTP-binding protein Era [Streptococcus pneumoniae SP18-BS74] gi|168996796|gb|ACA37408.1| GTP-binding protein Era [Streptococcus pneumoniae Hungary19A-6] gi|220674192|emb|CAR68720.1| GTP-binding protein Era homolog [Streptococcus pneumoniae ATCC 700669] gi|306484542|gb|ADM91411.1| GTP-binding protein Era [Streptococcus pneumoniae 670-6B] gi|307618177|gb|EFN97335.1| GTP-binding protein Era [Streptococcus mitis SK321] gi|307621746|gb|EFO00784.1| GTP-binding protein Era [Streptococcus mitis SK597] gi|321282271|gb|EFX59278.1| GTP-binding protein Era [Streptococcus sp. M334] gi|332075585|gb|EGI86053.1| GTP-binding protein Era [Streptococcus pneumoniae GA17545] Length = 299 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLDEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|77408568|ref|ZP_00785304.1| GTP-binding protein Era [Streptococcus agalactiae COH1] gi|77172842|gb|EAO75975.1| GTP-binding protein Era [Streptococcus agalactiae COH1] Length = 299 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 124 DKVHPDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLIKLLTDNLEEGFQYFPEDQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S V+ E K +E+ D + IR I VER SQK I Sbjct: 184 HPERFLVSEMVREKVLHLTQQEVPHSVAVIVESMKRDEETD-KVHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 243 IIGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNW 282 >gi|124023647|ref|YP_001017954.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9303] gi|123963933|gb|ABM78689.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9303] Length = 343 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/303 (33%), Positives = 167/303 (55%), Gaps = 12/303 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E + + + RSG VAL+G N GKSTLVN+ VG KV+I + QTTR+ +R IV+ E+ Sbjct: 31 EAMESLPEGYRSGFVALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAIVTTPEA 90 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 Q+V +DTPGI + +++ + + I D+V L+++ +++ + ++ Sbjct: 91 QMVLVDTPGIHKPHHLLGERLVQSARAAIGEVDLVLLLLEGCEPPGRGDAFIVELLRQQD 150 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLP 187 +++ LNK D V E+ + AE A + + + + + SA G GC+ ++ L LP Sbjct: 151 LPVLVALNKWDRVA-EQQHDPAEEAYRQLLADSAWPLIRCSAISGEGCNGLVEALVGQLP 209 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--------KKD 239 L P +Y A+ + D P AE+ RE++ +H +E+P+S V ++ EE K Sbjct: 210 LGPQLYPAEMVCDQPERVLLAELIREQVLMHTREEVPHSVAVSIDRVEEMPVANGRPGKQ 269 Query: 240 GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 G + + VER SQK I++GK G +KTI A+ ++ +++ PV+L LFVKV DW Sbjct: 270 GRTAVLATVLVERKSQKGILIGKGGSMLKTIGQGARLQMQTLIDGPVYLELFVKVVPDWR 329 Query: 300 HDP 302 P Sbjct: 330 SKP 332 >gi|333001659|gb|EGK21226.1| GTP-binding protein Era [Shigella flexneri K-272] gi|333015935|gb|EGK35270.1| GTP-binding protein Era [Shigella flexneri K-227] Length = 301 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 163/294 (55%), Gaps = 13/294 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E + + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIECFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERA 291 >gi|322387708|ref|ZP_08061317.1| GTP-binding protein Era [Streptococcus infantis ATCC 700779] gi|321141575|gb|EFX37071.1| GTP-binding protein Era [Streptococcus infantis ATCC 700779] Length = 311 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 161/281 (57%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 16 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 75 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + +++ + +IL++NKI Sbjct: 76 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKI 135 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI+ Sbjct: 136 DKVHPDQLLAQIDDFRNQMDFKE-IVPISALQGNNVSHLIDILSENLEEGFQYFPSDQIT 194 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 195 DHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKG 253 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+K+I +L V L +VKV+K+W Sbjct: 254 IIIGKGGAMLKKIGTMARKDIELMLGDKVFLETWVKVKKNW 294 >gi|184159115|ref|YP_001847454.1| GTP-binding protein Era [Acinetobacter baumannii ACICU] gi|183210709|gb|ACC58107.1| GTPase [Acinetobacter baumannii ACICU] Length = 342 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/311 (32%), Positives = 169/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+ + + N +L+++ Sbjct: 85 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAQKWTQ-NDDLVLEKL 143 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D +R +L + KL+ + VSA +G + + + Sbjct: 144 KNADMPVILVINKADTFGDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKY 203 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 204 LPYQPPLYSIDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKT 263 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+RP QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 264 GRLKPACTYIDATIFVDRPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKV 323 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 324 KGGWSDDERAL 334 >gi|167753498|ref|ZP_02425625.1| hypothetical protein ALIPUT_01772 [Alistipes putredinis DSM 17216] gi|167658123|gb|EDS02253.1| hypothetical protein ALIPUT_01772 [Alistipes putredinis DSM 17216] Length = 293 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 152/278 (54%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N VG ++SI+T K QTTR + G+VS ++ QIVF DTPGI Sbjct: 3 KAGFVNIIGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGVVSGEDFQIVFSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ + AD++ V D+ E +D+L++I + + ++NKI Sbjct: 63 LKPSYKLQESMMKFVTGAVNDADVILYVTDTV-EQSDRSNDILEKIRQSDIPTLAVINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D PE+L E + L+ VSA + + + + LP YS D ++D Sbjct: 122 DLTTPEKLEELVDKWQALLPAATIVPVSARENFNIKGLFDLILERLPEGEAFYSKDTLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + F +EI REK+ + KEIPY + E + E+ I VIYV R SQK I++ Sbjct: 182 KTLRFFASEIIREKILRNYDKEIPYCCEIAIEAYREEPTID-RISAVIYVARDSQKGILI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G+ +K + +A+++I + L + V L L+VKV ++W Sbjct: 241 GHKGEKLKKVGQQAREDIEQFLGKKVFLELYVKVNENW 278 >gi|327460961|gb|EGF07294.1| GTP-binding protein Era [Streptococcus sanguinis SK1057] Length = 299 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 159/280 (56%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVEAAYSTLREVDTVLFMVPVDEPRGKGDDMIIERLKAAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LL Q + + + ++ +SA +G+ +++ L L + DQI+D Sbjct: 124 DKVHPDQLLAQIDDFRQQMDFKEIVPISALQGNNVSHLIDILSENLEEGFQYFPEDQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ + +EIP+S VV + K +E+ D + IR I VER SQK I Sbjct: 184 HPERFLVSEMIREKVLMLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 243 IIGKGGSMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|210633812|ref|ZP_03297859.1| hypothetical protein COLSTE_01776 [Collinsella stercoris DSM 13279] gi|210159072|gb|EEA90043.1| hypothetical protein COLSTE_01776 [Collinsella stercoris DSM 13279] Length = 338 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 153/288 (53%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + SG VALVG NAGKSTL+N G KV+I + QTTR +R +V+ + Q+V + Sbjct: 39 VPEGFHSGFVALVGRPNAGKSTLLNACYGEKVAITSPVAQTTRRRLRAVVNREGCQLVIV 98 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI KD + + + + D++ V+D+ + + + +A + +L Sbjct: 99 DTPGIHKPKDGLGSELNKSALGELADVDVIAFVIDASAPIGRGDAWVAERVAAAKAPKVL 158 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 L K D PE++L+Q E A LV + +VS+T+G + ++ + LP P + Sbjct: 159 ALTKADLAGPEQMLKQLEAARALVDFDDEIVVSSTEGFNVEAFVDVVAGFLPEGPRWFPE 218 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 +D AE REK+ L +EIP++ V+ +++E K + + +YVER Q Sbjct: 219 GMGTDEADEVMVAEFVREKVLLRTREEIPHAVGVICDEFERPKRDLLRLHATVYVEREGQ 278 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++GK G+ IK I +EA++++ + V L L VKV+ W D + Sbjct: 279 KGILVGKGGEMIKRIGIEARRDLERMFGCRVFLGLDVKVKPHWREDAR 326 >gi|332088078|gb|EGI93203.1| GTP-binding protein Era [Shigella boydii 5216-82] Length = 301 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 161/295 (54%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKVPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E + + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIESFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|257791391|ref|YP_003181997.1| GTP-binding protein Era [Eggerthella lenta DSM 2243] gi|325831362|ref|ZP_08164616.1| ribosome biogenesis GTPase Era [Eggerthella sp. HGA1] gi|257475288|gb|ACV55608.1| GTP-binding protein Era [Eggerthella lenta DSM 2243] gi|325486616|gb|EGC89064.1| ribosome biogenesis GTPase Era [Eggerthella sp. HGA1] Length = 307 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 160/287 (55%), Gaps = 1/287 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V D+ +SG V LVG NAGKSTL+N +G K++I ++ QTTR R +++ + Q++ + Sbjct: 8 VGDSFKSGFVTLVGRPNAGKSTLINAIMGKKIAITSNTAQTTRHRFRAVLTREGFQLILV 67 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPG+ D+ + + + ++ D+V +VD+ + + + ++ + S+ IL Sbjct: 68 DTPGLHKPHDALGEELNTSALKALEDVDVVAFLVDASKPVGTGDEWVAAQLKRARSKKIL 127 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +L+KID V E+L Q A +L + +S+ G D ++ + + LP P + Sbjct: 128 VLSKIDLVDGEQLDRQRFAAAQLGDWDAVVELSSQTGEHVQDFVDEVVALLPPGPAWFPT 187 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE-EKKDGSILIRQVIYVERPS 254 D +D P+ AE REK+ H E+P++ V E+ E ++K I ++YVER S Sbjct: 188 DMETDQPIEVVVAEFIREKILRSFHDEVPHAIGVRVEEMEYDRKKDLYRIFAIVYVERDS 247 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G IK I EA++++ ++L V L L VKV+K+W D Sbjct: 248 QKGIIIGKKGAAIKQIGTEARQDLEQLLGCRVFLDLSVKVKKNWRRD 294 >gi|15900846|ref|NP_345450.1| GTP-binding protein Era [Streptococcus pneumoniae TIGR4] gi|15902915|ref|NP_358465.1| GTP-binding protein Era [Streptococcus pneumoniae R6] gi|111657969|ref|ZP_01408676.1| hypothetical protein SpneT_02000858 [Streptococcus pneumoniae TIGR4] gi|116516762|ref|YP_816339.1| GTP-binding protein Era [Streptococcus pneumoniae D39] gi|148984711|ref|ZP_01817979.1| GTP-binding protein Era [Streptococcus pneumoniae SP3-BS71] gi|148992896|ref|ZP_01822515.1| GTP-binding protein Era [Streptococcus pneumoniae SP9-BS68] gi|148998595|ref|ZP_01826035.1| GTP-binding protein Era [Streptococcus pneumoniae SP11-BS70] gi|149002520|ref|ZP_01827454.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS69] gi|149010385|ref|ZP_01831756.1| GTP-binding protein Era [Streptococcus pneumoniae SP19-BS75] gi|168483038|ref|ZP_02707990.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1873-00] gi|168490212|ref|ZP_02714411.1| GTP-binding protein Era [Streptococcus pneumoniae SP195] gi|168491058|ref|ZP_02715201.1| GTP-binding protein Era [Streptococcus pneumoniae CDC0288-04] gi|168494398|ref|ZP_02718541.1| GTP-binding protein Era [Streptococcus pneumoniae CDC3059-06] gi|168575631|ref|ZP_02721567.1| GTP-binding protein Era [Streptococcus pneumoniae MLV-016] gi|182683915|ref|YP_001835662.1| GTP-binding protein Era [Streptococcus pneumoniae CGSP14] gi|225856627|ref|YP_002738138.1| GTP-binding protein Era [Streptococcus pneumoniae P1031] gi|225858762|ref|YP_002740272.1| GTP-binding protein Era [Streptococcus pneumoniae 70585] gi|225861144|ref|YP_002742653.1| GTP-binding protein Era [Streptococcus pneumoniae Taiwan19F-14] gi|237650882|ref|ZP_04525134.1| GTP-binding protein Era [Streptococcus pneumoniae CCRI 1974] gi|237821333|ref|ZP_04597178.1| GTP-binding protein Era [Streptococcus pneumoniae CCRI 1974M2] gi|298229555|ref|ZP_06963236.1| GTP-binding protein Era [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254476|ref|ZP_06978062.1| GTP-binding protein Era [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503021|ref|YP_003724961.1| GTP-binding protein Era [Streptococcus pneumoniae TCH8431/19A] gi|303254436|ref|ZP_07340542.1| GTP-binding protein Era [Streptococcus pneumoniae BS455] gi|303259881|ref|ZP_07345856.1| GTP-binding protein Era [Streptococcus pneumoniae SP-BS293] gi|303262295|ref|ZP_07348239.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS292] gi|303264717|ref|ZP_07350635.1| GTP-binding protein Era [Streptococcus pneumoniae BS397] gi|303267324|ref|ZP_07353184.1| GTP-binding protein Era [Streptococcus pneumoniae BS457] gi|303269129|ref|ZP_07354908.1| GTP-binding protein Era [Streptococcus pneumoniae BS458] gi|307067626|ref|YP_003876592.1| GTPase [Streptococcus pneumoniae AP200] gi|61223691|sp|P0A3C3|ERA_STRPN RecName: Full=GTPase Era gi|61223692|sp|P0A3C4|ERA_STRR6 RecName: Full=GTPase Era gi|122278775|sp|Q04KV9|ERA_STRP2 RecName: Full=GTPase Era gi|226741242|sp|B2IPC3|ERA_STRPS RecName: Full=GTPase Era gi|254783665|sp|C1C6U6|ERA_STRP7 RecName: Full=GTPase Era gi|254783669|sp|C1CK50|ERA_STRZP RecName: Full=GTPase Era gi|254783670|sp|C1CRT1|ERA_STRZT RecName: Full=GTPase Era gi|5305399|gb|AAD41632.1|AF072811_1 GTPase Era [Streptococcus pneumoniae] gi|14972444|gb|AAK75090.1| GTP-binding protein Era [Streptococcus pneumoniae TIGR4] gi|15458475|gb|AAK99675.1| GTPase/GTP-binding protein [Streptococcus pneumoniae R6] gi|116077338|gb|ABJ55058.1| GTP-binding protein Era [Streptococcus pneumoniae D39] gi|147755593|gb|EDK62640.1| GTP-binding protein Era [Streptococcus pneumoniae SP11-BS70] gi|147759457|gb|EDK66449.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS69] gi|147764866|gb|EDK71795.1| GTP-binding protein Era [Streptococcus pneumoniae SP19-BS75] gi|147923102|gb|EDK74217.1| GTP-binding protein Era [Streptococcus pneumoniae SP3-BS71] gi|147928348|gb|EDK79364.1| GTP-binding protein Era [Streptococcus pneumoniae SP9-BS68] gi|172043458|gb|EDT51504.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1873-00] gi|182629249|gb|ACB90197.1| GTP-binding protein Era [Streptococcus pneumoniae CGSP14] gi|183571455|gb|EDT91983.1| GTP-binding protein Era [Streptococcus pneumoniae SP195] gi|183574573|gb|EDT95101.1| GTP-binding protein Era [Streptococcus pneumoniae CDC0288-04] gi|183575685|gb|EDT96213.1| GTP-binding protein Era [Streptococcus pneumoniae CDC3059-06] gi|183578605|gb|EDT99133.1| GTP-binding protein Era [Streptococcus pneumoniae MLV-016] gi|225720717|gb|ACO16571.1| GTP-binding protein Era [Streptococcus pneumoniae 70585] gi|225725237|gb|ACO21089.1| GTP-binding protein Era [Streptococcus pneumoniae P1031] gi|225726867|gb|ACO22718.1| GTP-binding protein Era [Streptococcus pneumoniae Taiwan19F-14] gi|298238616|gb|ADI69747.1| GTP-binding protein Era [Streptococcus pneumoniae TCH8431/19A] gi|301799945|emb|CBW32528.1| GTP-binding protein Era homolog [Streptococcus pneumoniae OXC141] gi|301801812|emb|CBW34523.1| GTP-binding protein Era homolog [Streptococcus pneumoniae INV200] gi|302598603|gb|EFL65643.1| GTP-binding protein Era [Streptococcus pneumoniae BS455] gi|302636618|gb|EFL67109.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS292] gi|302639086|gb|EFL69546.1| GTP-binding protein Era [Streptococcus pneumoniae SP-BS293] gi|302641316|gb|EFL71684.1| GTP-binding protein Era [Streptococcus pneumoniae BS458] gi|302643134|gb|EFL73421.1| GTP-binding protein Era [Streptococcus pneumoniae BS457] gi|302645804|gb|EFL76033.1| GTP-binding protein Era [Streptococcus pneumoniae BS397] gi|306409163|gb|ADM84590.1| GTPase [Streptococcus pneumoniae AP200] gi|327389247|gb|EGE87592.1| GTP-binding protein Era [Streptococcus pneumoniae GA04375] gi|332073302|gb|EGI83781.1| GTP-binding protein Era [Streptococcus pneumoniae GA17570] gi|332076243|gb|EGI86709.1| GTP-binding protein Era [Streptococcus pneumoniae GA41301] gi|332201435|gb|EGJ15505.1| GTP-binding protein Era [Streptococcus pneumoniae GA47368] gi|332202824|gb|EGJ16893.1| GTP-binding protein Era [Streptococcus pneumoniae GA41317] Length = 299 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLDEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|296104241|ref|YP_003614387.1| GTP-binding protein Era [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058700|gb|ADF63438.1| GTP-binding protein Era [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 301 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 159/286 (55%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM + + S+I ++V VV+ R + +L ++ + +IL +NK+D Sbjct: 69 EEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKTPVILAVNKVD 127 Query: 142 CV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 V K + L + +++ F++ +SA G D + + LP A + D I+ Sbjct: 128 NVQEKADLLPHLQWLGSQMNFLD-IVPLSAETGLNVDTIAGIVRKHLPEATHHFPEDYIT 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL L E+PYS V E+++ + G I +I VER QKK++ Sbjct: 187 DRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFQSNERGGYDINGLILVEREGQKKMV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 247 IGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|307708604|ref|ZP_07645068.1| GTP-binding protein Era [Streptococcus mitis NCTC 12261] gi|307615353|gb|EFN94562.1| GTP-binding protein Era [Streptococcus mitis NCTC 12261] Length = 299 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKIPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLDEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|332532634|ref|ZP_08408510.1| GTP-binding protein Era [Pseudoalteromonas haloplanktis ANT/505] gi|332037850|gb|EGI74299.1| GTP-binding protein Era [Pseudoalteromonas haloplanktis ANT/505] Length = 310 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 167/287 (58%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N + KVSI + K QTTR + GI +E + Q V++DTPG+ Sbjct: 19 GMVAIVGRPNVGKSTLLNEIIEQKVSITSRKPQTTRHRIMGIHTEGKHQAVYIDTPGLHV 78 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + ++LM R + S+I +++ VV+ +H ++ +L ++++ ++L++NKI Sbjct: 79 EEKRAINRLMNRAASSSIGDVELIIFVVEGTHWNADDDM--VLNKVSQSGKPVLLVINKI 136 Query: 141 DCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D VK L+ +++K F+ VSAT+G D + + LP + + D + Sbjct: 137 DQVKDRDLVLPHMKWLSDKFDFV-GIMPVSATQGKNVDLIKAEVTKRLPPCEFYFPEDYV 195 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D M AE+ REKL + +E+PYS V E+++ + +G I +I VER +QK++ Sbjct: 196 TDRSMRFMAAEVIREKLMRFMGEELPYSVTVEIEQFKWQDNGIWHINGLILVERETQKRM 255 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++G G+ +KTI EA+K+I E+L+ V L L+VKV+ W D + Sbjct: 256 VIGNKGEKLKTIGREARKDIEEMLDNKVFLELWVKVKSGWADDERAL 302 >gi|284047992|ref|YP_003398331.1| GTP-binding protein Era [Acidaminococcus fermentans DSM 20731] gi|283952213|gb|ADB47016.1| GTP-binding protein Era [Acidaminococcus fermentans DSM 20731] Length = 308 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 158/280 (56%), Gaps = 4/280 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA+VG NAGKSTLVN VG KV+I++ + QTTR+ + I+S +E+Q+VFLDTPG+ Sbjct: 11 SGFVAVVGRPNAGKSTLVNHLVGEKVAIISDRPQTTRNRILSILSTEEAQMVFLDTPGLH 70 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-SSRLILILNKI 140 +D + M++ + + IK D+V VVD+ + +L+ + + + +IL+LNKI Sbjct: 71 KPQDKLGEHMVQAALNAIKEVDVVLFVVDASEKRGKGEQVILERLKEECHAPVILVLNKI 130 Query: 141 DCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D + P++ LL + K +SA + +L + LP P Y D Sbjct: 131 DRL-PDKAVLLPIIDKFRKEYPFRSVLTLSALEDEDFSPLLQEIVRCLPEGPSFYPEDMY 189 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P AEI REK+ E+P++ V ++ + + + + +R IYVER SQK I Sbjct: 190 TDQPERVMAAEIVREKILQLTRDEVPHAVAVQVQEMKTRPNNLVYVRADIYVERDSQKAI 249 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++G G+ +K IS A++++ L V+L L+VKV+ W Sbjct: 250 LIGAKGKMLKEISQRAREDMEAFLGNRVYLELWVKVRPKW 289 >gi|292490850|ref|YP_003526289.1| GTP-binding protein Era [Nitrosococcus halophilus Nc4] gi|291579445|gb|ADE13902.1| GTP-binding protein Era [Nitrosococcus halophilus Nc4] Length = 303 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 164/292 (56%), Gaps = 10/292 (3%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 + +R G VA++G N GKS+L+N +G K+SI + QTTR + GI + ++Q ++ Sbjct: 5 MLTQGARCGYVAIIGRPNVGKSSLLNCILGQKISITARRPQTTRHRILGIKTSPDAQAIY 64 Query: 75 LDTPGIFNAKDSYHKLMIRL----SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DTPG+ +D +LM R + S I+ D++ +V+++R + + +L+ + +R Sbjct: 65 VDTPGL---QDKERRLMNRYLNRAADSAIEDVDLILFIVEAYRFTEED-ERILQRLRRRG 120 Query: 131 SRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ++L+LNK+D V ++ LL E +K + VSA KG + + LP Sbjct: 121 VPIVLVLNKVDRVADKKTLLPIMEQLSKKMEFAAIVPVSAWKGDNVAVLEKKVAGLLPEG 180 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 P +Y DQ++D AE+ REKL HL +E+PY+ V E EE+K+ I IY Sbjct: 181 PMIYPEDQVTDRSERFLAAELIREKLTRHLGQELPYALTVFVESIEEEKN-LYRIAATIY 239 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VERP QK I++GK G+ +K I EA+ ++ + V+L L+VKV++ W + Sbjct: 240 VERPGQKAIVIGKKGEGLKRIGYEARLDMERMFGGKVYLELWVKVREGWSDN 291 >gi|218200669|gb|EEC83096.1| hypothetical protein OsI_28232 [Oryza sativa Indica Group] Length = 437 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 163/291 (56%), Gaps = 11/291 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ S V +VGA NAGKS+L N VG KV+ V+ K TT + G++++ +QI F D Sbjct: 143 EEDQMSLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQICFFD 202 Query: 77 TPGIFNAKDS--YHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 TPG+ + + +R+ +WS+I D++ ++ D +R LK ++K I + + Sbjct: 203 TPGLMLGHHGLPHRDVTVRVESAWSSINLYDLLIVLFDVNRHLKTPDTRVVKLIKRLGAE 262 Query: 133 L------ILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + IL +NK+D V+ ++ LL+ A+ L E+ FMVS KG G D++ +L Sbjct: 263 VNPNQKRILCMNKVDLVEDKKDLLKVAKEFEDLPAYERYFMVSGLKGKGVKDLVQFLMEQ 322 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW +++ M + E+ REK+ H+H+EIPY W+E KDGS+ + Sbjct: 323 AVRRPWDEEPTTMTEEIMKTISLEVVREKMLDHIHQEIPYVIDHRLMDWKELKDGSLRVE 382 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 Q + SQ++I++GKNG I I +EA +E+ I ++ VHLIL V+V K Sbjct: 383 QHFIAPKQSQRQILVGKNGSKIGRIGIEANEELRSIFKRDVHLILQVRVAK 433 >gi|331266548|ref|YP_004326178.1| GTPase/GTP-binding protein Era [Streptococcus oralis Uo5] gi|326683220|emb|CBZ00838.1| GTPase/GTP-binding protein Era [Streptococcus oralis Uo5] Length = 299 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EPRGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLIDILSENLEEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGTMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|147860032|emb|CAN83131.1| hypothetical protein VITISV_029539 [Vitis vinifera] Length = 928 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 156/287 (54%), Gaps = 11/287 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ RS V ++GA NAGKS+L N VG KV+ V+ K TT V G++++ +QI F D Sbjct: 600 EEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRKTNTTTHEVLGVMTKGNTQICFFD 659 Query: 77 TPGIFNAKDSYH----KLMIRLSWSTIKHADIVCLVVDSHRELK------VNIHDLLKEI 126 TPG+ Y + + +WS++ D++ ++ D HR L V + + + Sbjct: 660 TPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIFDVHRHLSRPDSRVVRLIERMGAQ 719 Query: 127 AKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 A + +L +NK+D V K + LL+ A+ L E+ FM+S KG G D+ +L Sbjct: 720 AHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYERYFMISGLKGSGVKDLTQFLMEQ 779 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW +S+ M + + E+ RE+L H+H+EIPY W+E +DGS+ I Sbjct: 780 AFKRPWDEDPFTMSEEVMKNISLEVVRERLLDHVHQEIPYGIDHRLIDWKELRDGSLRIE 839 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFV 292 Q + + SQ+KI++GK G I I +EA +E+ I ++ VHLIL + Sbjct: 840 QHLITPKQSQRKILVGKKGSKIGRIGIEANEELRSIFKRDVHLILQI 886 >gi|15832686|ref|NP_311459.1| GTP-binding protein Era [Escherichia coli O157:H7 str. Sakai] gi|168748364|ref|ZP_02773386.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4113] gi|168757773|ref|ZP_02782780.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4401] gi|168761187|ref|ZP_02786194.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4501] gi|168768670|ref|ZP_02793677.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4486] gi|168773508|ref|ZP_02798515.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4196] gi|168778543|ref|ZP_02803550.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4076] gi|168787926|ref|ZP_02812933.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC869] gi|168798948|ref|ZP_02823955.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC508] gi|195936713|ref|ZP_03082095.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4024] gi|208807726|ref|ZP_03250063.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4206] gi|208812920|ref|ZP_03254249.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4045] gi|208818911|ref|ZP_03259231.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4042] gi|209400046|ref|YP_002272041.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4115] gi|217326912|ref|ZP_03442995.1| GTP-binding protein Era [Escherichia coli O157:H7 str. TW14588] gi|254794516|ref|YP_003079353.1| GTP-binding protein Era [Escherichia coli O157:H7 str. TW14359] gi|261222998|ref|ZP_05937279.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O157:H7 str. FRIK2000] gi|261259451|ref|ZP_05951984.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O157:H7 str. FRIK966] gi|291283841|ref|YP_003500659.1| GTP-binding protein era [Escherichia coli O55:H7 str. CB9615] gi|13959352|sp|P58070|ERA_ECO57 RecName: Full=GTPase Era gi|226741207|sp|B5Z140|ERA_ECO5E RecName: Full=GTPase Era gi|13362903|dbj|BAB36855.1| GTP-binding protein [Escherichia coli O157:H7 str. Sakai] gi|187770556|gb|EDU34400.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4196] gi|188017077|gb|EDU55199.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4113] gi|189003180|gb|EDU72166.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4076] gi|189355284|gb|EDU73703.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4401] gi|189362313|gb|EDU80732.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4486] gi|189368417|gb|EDU86833.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4501] gi|189372292|gb|EDU90708.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC869] gi|189378591|gb|EDU97007.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC508] gi|208727527|gb|EDZ77128.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4206] gi|208734197|gb|EDZ82884.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4045] gi|208739034|gb|EDZ86716.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4042] gi|209161446|gb|ACI38879.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4115] gi|209762888|gb|ACI79756.1| GTP-binding protein [Escherichia coli] gi|209762890|gb|ACI79757.1| GTP-binding protein [Escherichia coli] gi|209762892|gb|ACI79758.1| GTP-binding protein [Escherichia coli] gi|209762894|gb|ACI79759.1| GTP-binding protein [Escherichia coli] gi|209762896|gb|ACI79760.1| GTP-binding protein [Escherichia coli] gi|217319279|gb|EEC27704.1| GTP-binding protein Era [Escherichia coli O157:H7 str. TW14588] gi|254593916|gb|ACT73277.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O157:H7 str. TW14359] gi|290763714|gb|ADD57675.1| GTP-binding protein era [Escherichia coli O55:H7 str. CB9615] gi|320188907|gb|EFW63566.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC1212] gi|320640815|gb|EFX10309.1| GTPase Era [Escherichia coli O157:H7 str. G5101] gi|320646161|gb|EFX15101.1| GTPase Era [Escherichia coli O157:H- str. 493-89] gi|320651456|gb|EFX19852.1| GTPase Era [Escherichia coli O157:H- str. H 2687] gi|320657057|gb|EFX24876.1| GTPase Era [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662722|gb|EFX30061.1| GTPase Era [Escherichia coli O55:H7 str. USDA 5905] gi|320667542|gb|EFX34462.1| GTPase Era [Escherichia coli O157:H7 str. LSU-61] gi|326340372|gb|EGD64176.1| GTP-binding protein Era [Escherichia coli O157:H7 str. 1125] gi|326345055|gb|EGD68799.1| GTP-binding protein Era [Escherichia coli O157:H7 str. 1044] Length = 301 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/295 (34%), Positives = 163/295 (55%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVATIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|86134519|ref|ZP_01053101.1| GTP-binding protein Era [Polaribacter sp. MED152] gi|85821382|gb|EAQ42529.1| GTP-binding protein Era [Polaribacter sp. MED152] Length = 293 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 151/281 (53%), Gaps = 2/281 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N VG K+SI+T K QTTR + GIV+ +E QI+F DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNALVGEKLSIITPKAQTTRHRILGIVNHEEYQIIFSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 M+ S + AD++ +V+ E + +I +IL+LNKI Sbjct: 64 IKPAYELQASMMDFVKSAFEDADVLIYMVEVG-ETALKNEAFFNKIIHSKIPVILLLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E + E+ + V +++SA + D V + LP +P Y DQ++D Sbjct: 123 DKSNKEEVDEKIAYWREKVPNSFVYVISALERFNVDAVFYKIIELLPESPPFYPKDQLTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 F E REK+ H KEIPYS V TE + E ++ + IR +I VER +QK I++ Sbjct: 183 KNERFFVNEKIREKILTHYKKEIPYSVEVETESFIE-EENIVRIRSIIMVERDTQKGIII 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 G G IK + EA+K++ ++ V + L+VKV K+W D Sbjct: 242 GHKGTAIKRVGAEARKDLERFFQKKVFIELYVKVNKNWRSD 282 >gi|194335605|ref|YP_002017399.1| GTP-binding protein Era [Pelodictyon phaeoclathratiforme BU-1] gi|194308082|gb|ACF42782.1| GTP-binding protein Era [Pelodictyon phaeoclathratiforme BU-1] Length = 306 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 154/285 (54%), Gaps = 9/285 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G ++G NAGKSTL+N + K+SIVT K QTTR + GI ++ QI+FLDTPGI Sbjct: 9 GFAIIIGPPNAGKSTLLNELLDYKLSIVTPKPQTTRKKITGIYHNEKCQIIFLDTPGIMK 68 Query: 83 AKDSYHKLMIRLSWSTIKHADIV--CLVVDSHREL--KVNIHDLLKEIAKRSSR-LILIL 137 + H+ M+ + T+K AD+V L ++ + +L K + + +I +L Sbjct: 69 PQQKLHESMLGVIRDTLKDADVVIALLPFSGKKDFFDRPFAEELFGNWLKPAGKPVIAVL 128 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D V ER E K VSA K ++ + LPL +Y D Sbjct: 129 NKCDLVSAERQEEAEAFVRKSWNPAAVLSVSALKATNLPQLIETIQPFLPLDYPLYPEDT 188 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LIRQVIYVERP 253 +S P F +EI REK+FL +E+PYS+ VV +++ E+ + LIR + VER Sbjct: 189 LSTAPERFFVSEIIREKIFLLYGREVPYSTEVVIDEFREQYENDPTRKDLIRCSVIVERE 248 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +QK+I++G G +K + A+K+I E+L +PV L LF+KV+ DW Sbjct: 249 TQKQILIGSKGAALKKLGQTARKDIEEMLGRPVFLELFIKVRPDW 293 >gi|313813037|gb|EFS50751.1| GTP-binding protein Era [Propionibacterium acnes HL025PA1] gi|327330798|gb|EGE72544.1| GTP-binding protein Era [Propionibacterium acnes HL097PA1] Length = 342 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 42 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 101 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ +IA+ R LI + K Sbjct: 102 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAELPRRPTLIALATK 161 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 162 SDLVSKARMAEHLAAIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVIASLLPEGPAYYP 221 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 222 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVYASLI 281 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 282 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPIHLDLQVKVLPNWQSDPK 335 >gi|225854473|ref|YP_002735985.1| GTP-binding protein Era [Streptococcus pneumoniae JJA] gi|254783668|sp|C1CDW4|ERA_STRZJ RecName: Full=GTPase Era gi|225722974|gb|ACO18827.1| GTP-binding protein Era [Streptococcus pneumoniae JJA] Length = 299 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLGEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|295097901|emb|CBK86991.1| GTP-binding protein Era [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 301 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 161/291 (55%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKTYCGFIAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKTPVILA 122 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V K + L + +++ F++ +SA G D + + LP A + Sbjct: 123 VNKVDNVQEKADLLPHLQWLGSQMNFLD-IVPLSAETGLNVDTIAGIVRKHLPEATHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L E+PYS V E+++ + G I +I VER Sbjct: 182 EDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFQSNERGGYDINGLILVEREG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G G IKTI +EA+K++ ++ E PVHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGAKIKTIGIEARKDMQDMFEAPVHLELWVKVKSGWADDERAL 292 >gi|50842423|ref|YP_055650.1| GTP-binding protein Era [Propionibacterium acnes KPA171202] gi|282854117|ref|ZP_06263454.1| GTP-binding protein Era [Propionibacterium acnes J139] gi|50840025|gb|AAT82692.1| GTP-binding protein Era homolog [Propionibacterium acnes KPA171202] gi|282583570|gb|EFB88950.1| GTP-binding protein Era [Propionibacterium acnes J139] Length = 340 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 40 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 99 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ +IA+ R L+ + K Sbjct: 100 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAELPRRPTLVALATK 159 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 160 SDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVIASLLPEGPAYYP 219 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 220 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVYASLI 279 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 280 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPIHLDLQVKVLPNWQSDPK 333 >gi|78212431|ref|YP_381210.1| GTP-binding protein Era [Synechococcus sp. CC9605] gi|78196890|gb|ABB34655.1| GTP-binding protein Era [Synechococcus sp. CC9605] Length = 311 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 162/299 (54%), Gaps = 9/299 (3%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + ++ RSG +AL+G N GKSTLVN+ VG KV+I + QTTR+ +R I++ + +Q Sbjct: 2 HATPLPEDYRSGFIALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAILTTEVAQ 61 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +V +DTPGI + +++ + S I D+V L+++ ++ + ++S Sbjct: 62 MVLVDTPGIHKPHHLLGERLVKSARSAIGEVDLVVLLLEGCERPGRGDAFIVNLLQQQSL 121 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPL 188 +++ LNK D + E E E L E + V SA G GC D+ + + LPL Sbjct: 122 PVLVALNKWDKLAEEHRAEAEEAYAAL-LQETNWPVHRCSALSGDGCADLTAAMAAQLPL 180 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-----KKDGSIL 243 P +Y + +SD P E+ RE++ LH +E+P+S V ++ EE K G Sbjct: 181 GPQLYPPEMVSDQPERVLLGELIREQVLLHTREEVPHSVAVTIDRVEELPAKGKGAGRTA 240 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 + + VER SQK I++GK G +KTI A+ ++ +++ PV+L LFVKV DW P Sbjct: 241 VLATVLVERKSQKGILIGKGGAMLKTIGQGARLQMQVLIDGPVYLELFVKVVPDWRSKP 299 >gi|317401887|gb|EFV82494.1| GTP-binding protein [Achromobacter xylosoxidans C54] Length = 296 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 161/291 (55%), Gaps = 27/291 (9%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL N +G+K+SIV+ K QTTR + G+++ Q VF+DTPG Sbjct: 7 RTGFVAIVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTRDHEQFVFVDTPG- 65 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILI 136 F + + +++M R+ + D+V VV++ + E + LL R IL Sbjct: 66 FQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEGDAKLLPLLPA----PERTILA 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFM---------VSATKGHGCDDVLNYLCSTLP 187 ++KID +K L F+ K VSATK D +L + + LP Sbjct: 122 VSKIDALKNRDEL--------FAFVSKIMALHPFGAVVPVSATKNQQLDQLLQEIAARLP 173 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 ++ D ++D PM AE+ REK+F + E+PY VV E+WEE G+ I Sbjct: 174 EGEPMFEEDTLTDRPMRFIAAELVREKIFRLVGDELPYGCTVVIEQWEETDKGA-RIAAC 232 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + VER S K I+LG G ++K I+ EA+++IA++L++PVHL +++KV+K W Sbjct: 233 VVVERDSHKPILLGTGGMHMKRIASEARQDIAKLLDKPVHLEIYIKVRKGW 283 >gi|331002901|ref|ZP_08326414.1| GTP-binding protein Era [Lachnospiraceae oral taxon 107 str. F0167] gi|330413194|gb|EGG92568.1| GTP-binding protein Era [Lachnospiraceae oral taxon 107 str. F0167] Length = 298 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 165/296 (55%), Gaps = 14/296 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N +G K++I ++K QTTR+ ++ + +++ QIVFLDTPGI Sbjct: 2 KSGFVALIGRPNVGKSTLMNTLIGQKIAITSNKPQTTRNRIQTVFTDERGQIVFLDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+++S T++ D+V +++ + + + + ++ +IL +NK+ Sbjct: 62 HKAKNKLGEYMVKVSTRTLRDVDMVLWLIEPNTFIGEGDEHIFEILSNLEVPVILAINKM 121 Query: 141 DCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D + K + L A+ ++K+ F E VSA KG D +L + L P Y D + Sbjct: 122 DSLKQKEDMLAVIAKYSSKMKFAE-VVPVSALKGTNTDKLLEIIFKYLSEGPMYYDEDTV 180 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D P+ AE+ REK L +EIP+ V + + + G ++ I I E+ S K Sbjct: 181 TDQPIKQIAAELIREKALRFLQEEIPHGIAVEIDTFSYRDSGDMVDIEAAIVCEKDSHKG 240 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW----------GHDPK 303 I++GK G +K I A+K+I +LE V+L L+VKV+ W G++PK Sbjct: 241 IIIGKAGSMLKRIGTAARKDIEGLLEARVNLKLWVKVRPKWRDSDVQMKNFGYNPK 296 >gi|301794107|emb|CBW36513.1| GTP-binding protein Era homolog [Streptococcus pneumoniae INV104] gi|332204972|gb|EGJ19037.1| GTP-binding protein Era [Streptococcus pneumoniae GA47901] Length = 299 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLDEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPDRFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|291287434|ref|YP_003504250.1| GTP-binding protein Era [Denitrovibrio acetiphilus DSM 12809] gi|290884594|gb|ADD68294.1| GTP-binding protein Era [Denitrovibrio acetiphilus DSM 12809] Length = 295 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 157/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G ++++G N GKSTL+N +G K++I + K QTTR+ ++GI++ ++ Q++F+DTPG Sbjct: 5 KTGFISIMGRPNVGKSTLLNALMGEKIAITSSKPQTTRANIQGILTGEDFQLIFIDTPGY 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AKDS +K+M++ + +++ D + ++V + + L+K + K + LI+NK+ Sbjct: 65 HKAKDSINKMMVQQAKESLEAVDAIYVLVQPDEFMGPELTSLIKVLEKTDAVKFLIINKV 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D K E + + A ++ + VSA KG +L + V+ AD+++ Sbjct: 125 DHFKKELVYDMANKMFPMLEFKHVLPVSALKGTNVAKLLELTLEEMEEGEPVFPADEVTT 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE RE++F L EIPY V TEK E++ D + I I V R SQK +++ Sbjct: 185 QPEKLLVAEFIREQVFRQLSDEIPYQIVVETEKIEDRSDDLMYIAAAIIVNRDSQKGVVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK GQ +K IS ++ ++ ++L LFVKV+ W Sbjct: 245 GKGGQRLKEISTASRVSLSNFFGVKIYLELFVKVKTGW 282 >gi|289427040|ref|ZP_06428756.1| GTP-binding protein Era [Propionibacterium acnes J165] gi|295130499|ref|YP_003581162.1| GTP-binding protein Era [Propionibacterium acnes SK137] gi|289159509|gb|EFD07697.1| GTP-binding protein Era [Propionibacterium acnes J165] gi|291377214|gb|ADE01069.1| GTP-binding protein Era [Propionibacterium acnes SK137] gi|332675335|gb|AEE72151.1| GTP-binding protein Era [Propionibacterium acnes 266] Length = 340 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 40 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 99 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ +IA+ R LI + K Sbjct: 100 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAELPRRPTLIALATK 159 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 160 SDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVIASLLPEGPAYYP 219 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 220 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVYASLI 279 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 280 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPIHLDLQVKVLPNWQSDPK 333 >gi|314966861|gb|EFT10960.1| GTP-binding protein Era [Propionibacterium acnes HL082PA2] gi|315093218|gb|EFT65194.1| GTP-binding protein Era [Propionibacterium acnes HL060PA1] gi|327327686|gb|EGE69462.1| GTP-binding protein Era [Propionibacterium acnes HL103PA1] Length = 342 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 42 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 101 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ +IA+ R L+ + K Sbjct: 102 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAELPRRPTLVALATK 161 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 162 SDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVIASLLPEGPAYYP 221 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 222 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVYASLI 281 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 282 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPIHLDLQVKVLPNWQSDPK 335 >gi|67923219|ref|ZP_00516706.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Crocosphaera watsonii WH 8501] gi|67854950|gb|EAM50222.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Crocosphaera watsonii WH 8501] Length = 314 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 10/283 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N+ +G K++I + QTTR+ +RGI++ +++QI+F+DTPGI Sbjct: 21 KSGFVGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLRGILTTEKAQIIFVDTPGI 80 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 S K++++ + + I DI+ LVVDS + I DLLK + + +IL L Sbjct: 81 HKPHHSLGKIIVKNAKTAINAVDIILLVVDSSTKSGGGDRYIIDLLKTV---NQPIILGL 137 Query: 138 NKIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK D +PE E E L+ + SA G G +++ N L L P+ Y Sbjct: 138 NKSDQ-QPENYQEIDESYASLIQDYNWPILKFSALTGDGLENLQNSLIEQLDFGPYYYPP 196 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D P E+ RE++ +EIP+S + EK EE + I I VER SQ Sbjct: 197 DLITDQPERFIMGELIREQILQMTRQEIPHSVAIAIEKVEETPKVT-KIFAAINVERNSQ 255 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K IM+G+ G +K I A+++I +++ V+L LFVKV+ W Sbjct: 256 KGIMIGQKGSMLKAIGTAAREQIQKLIAGEVYLKLFVKVEPQW 298 >gi|306825398|ref|ZP_07458738.1| GTP-binding protein Era [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432336|gb|EFM35312.1| GTP-binding protein Era [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 299 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 161/281 (57%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI+ Sbjct: 124 DKVHPDQLLAQIDDFRNQMDFKE-IVPISALQGNNVSRLIDILSENLEEGFQYFPSDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGAMLKKIGTMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|260435524|ref|ZP_05789494.1| GTP-binding protein Era [Synechococcus sp. WH 8109] gi|260413398|gb|EEX06694.1| GTP-binding protein Era [Synechococcus sp. WH 8109] Length = 311 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 165/299 (55%), Gaps = 9/299 (3%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + ++ RSG +AL+G N GKSTLVN+ VG KV+I + QTTR+ +R +++ + +Q Sbjct: 2 HATPLPEDYRSGFIALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAVLTMEVAQ 61 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +V +DTPGI + +++ + S I D+V L+++ ++ + ++S Sbjct: 62 MVLVDTPGIHKPHHLLGERLVKSARSAIGEVDLVVLLLEGCERPGRGDAFIVNLLQQQSL 121 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPL 188 +++ LNK D + PE +AE A + E + V SA G GC ++ + + LPL Sbjct: 122 PVLVALNKWDKL-PEERRSEAEEAYAALLQETNWPVYRCSALSGDGCAELTTAMAAQLPL 180 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-----KKDGSIL 243 P +Y + +SD P E+ RE++ LH +E+P+S V ++ EE K G Sbjct: 181 GPQLYPPEMVSDQPERVLLGELIREQVLLHTREEVPHSVAVTIDRVEELPAKGKGAGRTA 240 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 + + VER SQK I++GK G +KTI A+ ++ +++ PV+L LFVKV DW P Sbjct: 241 VLATVLVERKSQKGILIGKGGAMLKTIGQGARLQMQVLIDGPVYLELFVKVVPDWRSKP 299 >gi|292489089|ref|YP_003531976.1| GTP-binding protein Era [Erwinia amylovora CFBP1430] gi|292900213|ref|YP_003539582.1| GTP-binding protein [Erwinia amylovora ATCC 49946] gi|291200061|emb|CBJ47187.1| GTP-binding protein [Erwinia amylovora ATCC 49946] gi|291554523|emb|CBA22092.1| GTP-binding protein Era [Erwinia amylovora CFBP1430] gi|312173247|emb|CBX81502.1| GTP-binding protein Era [Erwinia amylovora ATCC BAA-2158] Length = 301 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 156/285 (54%), Gaps = 3/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E + Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I ++V VV+ R + +L ++ ++L +NK+D Sbjct: 69 EEKRAINRLMNRAASSSIGDVEMVIFVVEGTR-WTADDEMVLNKLKDGKVPVLLAINKVD 127 Query: 142 CVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + LL + + + +SA KG D + + + LP A + D I+D Sbjct: 128 NITDKSILLPHLQFLGQQMNFMDVVPISAEKGSNVDTIASIVRKRLPQAEHHFPEDYITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +EI REKL L E+PYS V E++ + G + I +I VER QKK+++ Sbjct: 188 RSQRFMASEIIREKLMRFLGAELPYSVTVEIEQFVTNERGGLTINGLILVEREGQKKMVI 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 G G IKTI EA++++ E+ E VHL L+VKV+ W D + Sbjct: 248 GNKGAKIKTIGTEARRDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|237732552|ref|ZP_04563033.1| GTP-binding protein Era [Citrobacter sp. 30_2] gi|226908091|gb|EEH94009.1| GTP-binding protein Era [Citrobacter sp. 30_2] Length = 301 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 163/296 (55%), Gaps = 13/296 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G +A+VG N GKSTL+N +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EEKTYCGFIAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVIL 121 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLA 189 +NK+D V+ E+A++ L F+ + F+ +SA G D V + LP A Sbjct: 122 AVNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTVAGIVRKHLPEA 176 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 + D I+D +EI REKL L E+PYS V E++ + G I +I Sbjct: 177 IHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFISNERGGYDINGLIL 236 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 237 VEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|149019560|ref|ZP_01834879.1| GTP-binding protein Era [Streptococcus pneumoniae SP23-BS72] gi|147930935|gb|EDK81915.1| GTP-binding protein Era [Streptococcus pneumoniae SP23-BS72] Length = 299 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLDEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMLREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|121996843|ref|YP_001001630.1| GTP-binding protein Era [Halorhodospira halophila SL1] gi|121588248|gb|ABM60828.1| GTP-binding protein Era [Halorhodospira halophila SL1] Length = 305 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 166/293 (56%), Gaps = 18/293 (6%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG ALVG N GKSTL+N +G KVSIVT K QTTR + G+++ ++Q+V +DTPG+ Sbjct: 15 SGLCALVGRPNVGKSTLLNALLGEKVSIVTRKPQTTRHRILGVLNRPDAQMVLVDTPGMH 74 Query: 82 -NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +AK + ++ + R + ++ D+V VV E K + +L+ +A + +I+ +N++ Sbjct: 75 QSAKRALNRQLNRAAHGALEDIDVVVFVVRGT-EWKEDDQRVLERLADVDAPVIVAVNQV 133 Query: 141 DCVKPERLL--------EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 D V+ +RLL EQ + A VSAT+G D + LP P + Sbjct: 134 DRVQDKRLLLPHLEWLAEQRDFA-------ALVPVSATRGENLDALERETIQRLPSGPPL 186 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 + ADQI+D + E+ RE+L L+L E+PY++ V E+ +++G + VI+VE Sbjct: 187 FPADQITDRDLGFRLGELVREQLMLNLGDELPYTTSVQIEQL-HREEGMTRVAAVIWVES 245 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G+ G+ +K I A+ ++ +L + VHL L+ K+++ W +D + Sbjct: 246 DGQKPIVIGRGGERLKKIGRSARLQMENLLGERVHLELWTKIKEQWTNDRRAL 298 >gi|314981203|gb|EFT25297.1| GTP-binding protein Era [Propionibacterium acnes HL110PA3] gi|315091774|gb|EFT63750.1| GTP-binding protein Era [Propionibacterium acnes HL110PA4] gi|315103278|gb|EFT75254.1| GTP-binding protein Era [Propionibacterium acnes HL050PA2] gi|315105483|gb|EFT77459.1| GTP-binding protein Era [Propionibacterium acnes HL030PA1] Length = 342 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 42 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 101 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ +IA+ R L+ + K Sbjct: 102 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAELPRRPTLVALATK 161 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 162 SDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVIASLLPEGPAYYP 221 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 222 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVYASLI 281 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 282 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPIHLDLQVKVLPNWQSDPK 335 >gi|282600806|ref|ZP_05979765.2| GTP-binding protein Era [Subdoligranulum variabile DSM 15176] gi|282570996|gb|EFB76531.1| GTP-binding protein Era [Subdoligranulum variabile DSM 15176] Length = 296 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 155/277 (55%), Gaps = 5/277 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L N VG KV+IVT K QTTRS + G++++ Q V +DTPGI A Sbjct: 7 VALVGRPNVGKSSLTNYLVGEKVAIVTKKPQTTRSRITGVITKGPVQYVLMDTPGIHKAH 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + M + + +++K D+ ++ + EL + ++K + K I ++NK+D + Sbjct: 67 NKLDARMTQTAAASLKDVDVTMMLFEPEGELTDSELTMIKALQK-GGPAIAVINKVDLLD 125 Query: 145 PERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 LEQ ++A+ F + VSA G GC+++ L P + D +D+P Sbjct: 126 SFAALEQRKRQVADFRCF-DAVVTVSAKDGTGCEELFTLLKPYGNEGPHYFDDDAFTDMP 184 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV-IYVERPSQKKIMLG 261 AE+ REK L + EIP+ VV E+++E+ D ++ V IY ER S K +++G Sbjct: 185 EKELVAELVREKALLFMRDEIPHGIAVVVERFKERPDKDLIDIDVDIYCERKSHKGMIIG 244 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K GQ +K I+ A+ +I E+L V+L +VKV++DW Sbjct: 245 KGGQMLKKIASAARMDIEELLGVKVNLQCWVKVREDW 281 >gi|313772407|gb|EFS38373.1| GTP-binding protein Era [Propionibacterium acnes HL074PA1] gi|313807417|gb|EFS45904.1| GTP-binding protein Era [Propionibacterium acnes HL087PA2] gi|313809925|gb|EFS47646.1| GTP-binding protein Era [Propionibacterium acnes HL083PA1] gi|313818463|gb|EFS56177.1| GTP-binding protein Era [Propionibacterium acnes HL046PA2] gi|313820226|gb|EFS57940.1| GTP-binding protein Era [Propionibacterium acnes HL036PA1] gi|313822965|gb|EFS60679.1| GTP-binding protein Era [Propionibacterium acnes HL036PA2] gi|313825107|gb|EFS62821.1| GTP-binding protein Era [Propionibacterium acnes HL063PA1] gi|313830256|gb|EFS67970.1| GTP-binding protein Era [Propionibacterium acnes HL007PA1] gi|313834057|gb|EFS71771.1| GTP-binding protein Era [Propionibacterium acnes HL056PA1] gi|314925454|gb|EFS89285.1| GTP-binding protein Era [Propionibacterium acnes HL036PA3] gi|314960100|gb|EFT04202.1| GTP-binding protein Era [Propionibacterium acnes HL002PA2] gi|314973262|gb|EFT17358.1| GTP-binding protein Era [Propionibacterium acnes HL053PA1] gi|314975937|gb|EFT20032.1| GTP-binding protein Era [Propionibacterium acnes HL045PA1] gi|314978306|gb|EFT22400.1| GTP-binding protein Era [Propionibacterium acnes HL072PA2] gi|314984045|gb|EFT28137.1| GTP-binding protein Era [Propionibacterium acnes HL005PA1] gi|314987808|gb|EFT31899.1| GTP-binding protein Era [Propionibacterium acnes HL005PA2] gi|314990029|gb|EFT34120.1| GTP-binding protein Era [Propionibacterium acnes HL005PA3] gi|315080746|gb|EFT52722.1| GTP-binding protein Era [Propionibacterium acnes HL078PA1] gi|315084416|gb|EFT56392.1| GTP-binding protein Era [Propionibacterium acnes HL027PA2] gi|315085756|gb|EFT57732.1| GTP-binding protein Era [Propionibacterium acnes HL002PA3] gi|315088826|gb|EFT60802.1| GTP-binding protein Era [Propionibacterium acnes HL072PA1] gi|315096174|gb|EFT68150.1| GTP-binding protein Era [Propionibacterium acnes HL038PA1] gi|327326091|gb|EGE67881.1| GTP-binding protein Era [Propionibacterium acnes HL096PA2] gi|327332038|gb|EGE73775.1| GTP-binding protein Era [Propionibacterium acnes HL096PA3] gi|327443241|gb|EGE89895.1| GTP-binding protein Era [Propionibacterium acnes HL013PA2] gi|327446027|gb|EGE92681.1| GTP-binding protein Era [Propionibacterium acnes HL043PA2] gi|327447995|gb|EGE94649.1| GTP-binding protein Era [Propionibacterium acnes HL043PA1] gi|328753568|gb|EGF67184.1| GTP-binding protein Era [Propionibacterium acnes HL020PA1] gi|328760408|gb|EGF73976.1| GTP-binding protein Era [Propionibacterium acnes HL099PA1] Length = 342 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 42 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 101 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ +IA+ R LI + K Sbjct: 102 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAELPRRPTLIALATK 161 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 162 SDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVIASLLPEGPAYYP 221 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 222 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVYASLI 281 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 282 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPIHLDLQVKVLPNWQSDPK 335 >gi|261345440|ref|ZP_05973084.1| GTP-binding protein Era [Providencia rustigianii DSM 4541] gi|282566487|gb|EFB72022.1| GTP-binding protein Era [Providencia rustigianii DSM 4541] Length = 302 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/293 (36%), Positives = 159/293 (54%), Gaps = 15/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E QI+++DTPG Sbjct: 6 SHCGFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGINTEDNYQIIYVDTPG 65 Query: 80 I-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRSSRL 133 + K + ++LM R + S+I ++V VV+ E+ VN +++ + Sbjct: 66 LHIEEKRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVVN------KLSSLRCPV 119 Query: 134 ILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 IL +NKID V K L I+ K+ F++ +SA KG G D + + +P A Sbjct: 120 ILAINKIDNVVDKTSLLPHIGMISQKMNFLD-VVPISAEKGQGVDTIAKIVKQHIPEAIH 178 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + D I+D +EI REKL L E+PYS V E+++E G I +I VE Sbjct: 179 HFPEDYITDRSQRFMASEIIREKLMRFLGDELPYSVTVEIEQFKEMDRGGYHINGLILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 R QKK+++G G +KTI EA+ ++ + E VHL L+VKV+ W D + Sbjct: 239 REGQKKMVIGNKGSKLKTIGTEARIDMERLFETKVHLELWVKVKSGWADDERA 291 >gi|330752593|emb|CBL87539.1| GTP-binding protein era homolog [uncultured Flavobacteria bacterium] Length = 295 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 156/285 (54%), Gaps = 8/285 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ +SG V+++G N GKST +N +G +SIVT K QTTR + GIV+ Q+VF D Sbjct: 4 KNDHKSGFVSIIGNPNVGKSTFMNALLGLDISIVTPKAQTTRHRILGIVNGHNFQVVFSD 63 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLI 134 TPGI M+ +K ADI+ +V + E N+ D LL +I K S L Sbjct: 64 TPGIIKPSYEMQNSMMNFVKDALKDADIIIYMVTAKDE---NLKDQKLLNQIKKTKSPLF 120 Query: 135 LILNKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +++NKID ++L+E+ K +F + + +SA G +V N + +P +P + Sbjct: 121 VLINKIDK-STQKLVEKKVSYWKTIFPLANVYPISALNGFFISEVFNSIKELIPNSPAYF 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 DQI+D P F E R+++ EIPYS V+TE+++E I I VI VER Sbjct: 180 PKDQITDKPERFFVNESIRKQILQRYKNEIPYSVEVITEEFKESPK-IIKINSVIIVERE 238 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++G G +K + + A+K + + ++L L VKV K+W Sbjct: 239 SQKGIIIGHRGNALKQVGINARKSLQNFFGKKIYLELHVKVSKNW 283 >gi|239993709|ref|ZP_04714233.1| GTP-binding protein Era [Alteromonas macleodii ATCC 27126] Length = 303 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 166/290 (57%), Gaps = 9/290 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+NR +G KVSI + K QTTR + GI ++ + Q +++DTPG Sbjct: 6 TRCGLVAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTDGDYQAIYVDTPG 65 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILI 136 + + K + ++ M R + S++ +V VV+ R N D +L ++ + + LI Sbjct: 66 LHQDEKRAINRYMNRAASSSLAEVGLVLFVVEGDR---FNAEDEMVLSKVKQANLPCYLI 122 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V K ++ ++ K F E +SA +G D++ + +LP + + + Sbjct: 123 VNKMDKVEDKENFMVHLKKLGEKHPF-EHMIPISAKQGRMVDEIRELVAKSLPKSEFFFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D AEI REKL E+PYS+ V E+++ +G I +I VER + Sbjct: 182 EDYITDRSSRFMAAEIIREKLMRFTGDELPYSTTVEIEQFKMADNGVYRISGLILVERET 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QK++++GK G+++KTI +A+K++ + + V L L+VKV++ W D + Sbjct: 242 QKRMIIGKGGKHLKTIGEQARKDMENLFDNKVFLELWVKVKQGWADDERA 291 >gi|227544911|ref|ZP_03974960.1| GTP-binding protein Era [Lactobacillus reuteri CF48-3A] gi|300910062|ref|ZP_07127522.1| GTP-binding protein Era [Lactobacillus reuteri SD2112] gi|227185123|gb|EEI65194.1| GTP-binding protein Era [Lactobacillus reuteri CF48-3A] gi|300892710|gb|EFK86070.1| GTP-binding protein Era [Lactobacillus reuteri SD2112] Length = 301 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 158/280 (56%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VA++G N GKSTL+N VG KV+I+++ QTTR+ ++GI + E+QI+F+DTP Sbjct: 5 NYKSGFVAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI M + + S + D V VV + + +++ + K + + L++N Sbjct: 65 GIHKPSTKLGDFMEKSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + P L E + + + +SA +G+ ++++N + LP P Y ADQ+ Sbjct: 125 KIDQINPNDLPEIVDQYKDTLPFKGIVPISALQGNNVNNLINDIIKILPNGPQYYPADQV 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD P AE+ REK+FL +E+P+S V + + + I I I VERP QK I Sbjct: 185 SDHPERFVIAEMIREKVFLLTRQEVPHSVAVDVTSIKREDENHIHISANIIVERPGQKGI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G+ +K I A+++I ++L V L L+VKV DW Sbjct: 245 IIGKGGKMLKKIGTMARQDIEKLLGDKVFLQLWVKVVPDW 284 >gi|314923092|gb|EFS86923.1| GTP-binding protein Era [Propionibacterium acnes HL001PA1] Length = 342 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 162/294 (55%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V++++SQIV +DTPG+ Sbjct: 42 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEKSQIVVIDTPGLH 101 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 + + + L + T D++ + + S++ + L+ +IA+ R L+ + K Sbjct: 102 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAELPRRPTLVALATK 161 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E +KL V IE +V SA G D+V + + S LP P Y Sbjct: 162 SDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVIASLLPEGPAYYP 221 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + +D +L + + Sbjct: 222 DGEVTDEPTETLVAELIREAALEGVREELPHSLAVEIVEMGPREGQPEDRPLLDVYASLI 281 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P+HL L VKV +W DPK Sbjct: 282 VERDSQKGIMIGHHGSHIKQVRTHARQQIAALLGTPIHLDLQVKVLPNWQSDPK 335 >gi|251781922|ref|YP_002996224.1| GTP-binding protein Era [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390551|dbj|BAH81010.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 298 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LL Q + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 123 DKVHPDQLLAQIDDFRSQMEFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 183 HPERFLVSEMIREKVLHLTQQEVPHSVAVVVESMKRDEETD-KVHIRATIMVERDSQKGI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L ++VKV+K+W Sbjct: 242 IIGKQGAMLKKIGKMARRDIELMLGDKVYLEMWVKVKKNW 281 >gi|218282280|ref|ZP_03488579.1| hypothetical protein EUBIFOR_01161 [Eubacterium biforme DSM 3989] gi|218216748|gb|EEC90286.1| hypothetical protein EUBIFOR_01161 [Eubacterium biforme DSM 3989] Length = 319 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 162/280 (57%), Gaps = 1/280 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG +A+VG NAGKSTL+N + K++I++ K TTR+ + GI++ ++ Q VF+DTP Sbjct: 20 NYKSGFIAIVGRPNAGKSTLLNALLKEKIAIMSDKPNTTRNNISGILTHEDCQYVFVDTP 79 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI + +++ + ++S ++ D++ +VD + +LK I ++LI+N Sbjct: 80 GIHKPQQQLGRVLNKNAYSAMEDCDVIGWIVDGTQSFGTGDSFILKRIETLHKPVVLIMN 139 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + E+LL++ K +SA D++L+ LP ++ + Sbjct: 140 KIDKLPKEQLLKRLVYWQKQHDFNDIVPISALDKDNLDELLHVFKGYLPEGEPMFPEEMK 199 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD + EI REK+ H+EIP+S V+ E+ +EK+ + ++ ++ V+R SQK I Sbjct: 200 SDHDINFRMCEIVREKILFKTHEEIPHSVAVILER-KEKRGNRMYLQMMVVVDRESQKGI 258 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK I++I L+A+KE+ ++L V L LFV+V+K+W Sbjct: 259 LIGKQANMIRSIRLDAQKELKDMLGCSVDLELFVRVEKNW 298 >gi|163840661|ref|YP_001625066.1| GTP-binding protein Era [Renibacterium salmoninarum ATCC 33209] gi|162954137|gb|ABY23652.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209] Length = 326 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 104/316 (32%), Positives = 164/316 (51%), Gaps = 18/316 (5%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 M++ + ++D+ R+G L G NAGKSTL N VG KV+I + K QTTR Sbjct: 9 MKLTGSKIMDANQDY-----RAGFAVLAGRPNAGKSTLTNALVGQKVAITSAKPQTTRHT 63 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 +RGIV E Q++ +DTPG+ + + + L T+ D++ + ++ ++ Sbjct: 64 IRGIVHRDEYQLILVDTPGLHRPRTLLGQRLNDLVAGTLSEVDVIGFCLPANEKIGPGDR 123 Query: 121 DLLKEIAK-RSSRLILILNKIDCVKPERLLEQAEIANKL---VFIEKTFM----VSATKG 172 + ++A R +I ++ K D V E+L Q ++L V EK F VSA K Sbjct: 124 FIAAQLADLRGKPIIALVTKTDTVSKEQLAHQLLAVSELGQQVLGEKGFADVVPVSAVKD 183 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE 232 H D V L S LP++P +Y +++D P AE+ RE + E+P+S VV + Sbjct: 184 HQVDVVAKVLASHLPVSPALYPDGELTDEPEAIMVAELVREAALEGVRDEMPHSLAVVVD 243 Query: 233 KWEEKKDGS-----ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVH 287 + ++ S + +R +YVERPSQK I++GK G ++ + +A+ I +L V+ Sbjct: 244 EIIPREGRSAENPLLDVRVNLYVERPSQKAIIIGKGGARLRDVGTKARLGIEALLGTRVY 303 Query: 288 LILFVKVQKDWGHDPK 303 L L VKV KDW DPK Sbjct: 304 LDLHVKVAKDWQRDPK 319 >gi|33862628|ref|NP_894188.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9313] gi|33634544|emb|CAE20530.1| GTP-binding protein ERA homolog [Prochlorococcus marinus str. MIT 9313] Length = 316 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 164/296 (55%), Gaps = 12/296 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + RSG VAL+G N GKSTLVN+ VG KV+I + QTTR+ +R IV+ E+Q+V +DT Sbjct: 11 EGYRSGFVALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAIVTTSEAQMVLVDT 70 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI + +++ + + I D+V L+++ +++ + ++ +++ L Sbjct: 71 PGIHKPHHLLGERLVQSARAAIGEVDLVLLLLEGCESPGCGDAFIVELLRQQDLPVLVAL 130 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYS 194 NK D V E+ + AE A + + + + + SA G GC+ ++ L LPL P +Y Sbjct: 131 NKWDRVA-EQQQDPAEEAYRQLLADSAWPLIRCSAISGEGCNGLVEALVGHLPLGPQLYP 189 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--------KKDGSILIRQ 246 A+ + D P AE+ RE++ +H +E+P+S V ++ EE + G + Sbjct: 190 AEMVCDQPERVLLAELIREQVLMHTREEVPHSVAVSIDRVEEMPVANGRPGRQGRTAVLA 249 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 + VER SQK I++GK G +KTI A+ ++ +++ PV+L LFVKV DW P Sbjct: 250 TVLVERKSQKGILIGKGGSMLKTIGQGARLQMQTLIDGPVYLELFVKVVPDWRSKP 305 >gi|294651021|ref|ZP_06728361.1| GTP-binding protein era family protein [Acinetobacter haemolyticus ATCC 19194] gi|292823122|gb|EFF81985.1| GTP-binding protein era family protein [Acinetobacter haemolyticus ATCC 19194] Length = 341 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/312 (33%), Positives = 168/312 (53%), Gaps = 16/312 (5%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 24 FFSSQGTTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSR 83 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++SQ VF+DTPG+ + + +K+M R + S ++ ++V VVD+ + + N +L+++ Sbjct: 84 EKSQAVFVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVVDAQKWTQ-NDELVLEKL 142 Query: 127 AKRSSRLILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 +IL++NK+D K E L E A + F E VSA +G + + + + Sbjct: 143 KNADMPVILVINKLDTFENKNEALPLIQERAKLMNFAE-IVPVSALRGANLEHLRDTIEK 201 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEK 233 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 202 YLPYQPPLYSLDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEK 261 Query: 234 WEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 K I I+VER QK I++G G +K+I ++A+ ++ ++ EQ + L L+VK Sbjct: 262 TGRLKPPCTYIDATIFVERQGQKAIVIGDKGAKLKSIGMDARADMEKMFEQKIMLTLWVK 321 Query: 294 VQKDWGHDPKCC 305 V+ W D + Sbjct: 322 VKGGWSDDERAL 333 >gi|194467792|ref|ZP_03073778.1| GTP-binding protein Era [Lactobacillus reuteri 100-23] gi|194452645|gb|EDX41543.1| GTP-binding protein Era [Lactobacillus reuteri 100-23] Length = 301 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 157/280 (56%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VA++G N GKSTL+N VG KV+I+++ QTTR+ ++GI + E+QI+F+DTP Sbjct: 5 NYKSGFVAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI M + + S + D V VV + + +++ + K + + L++N Sbjct: 65 GIHKPSTKLGDFMEKSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + P L E + + + +SA +G+ ++++N + LP P Y ADQ+ Sbjct: 125 KIDQINPNDLPEIVDQYKDTLPFKGVVPISALQGNNVNNLINDIIKILPNGPQYYPADQV 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD P AE+ REK+FL +E+P+S V + + + I I I VERP QK I Sbjct: 185 SDHPERFVIAEMIREKVFLLTRQEVPHSVAVDVTSIKREDENHIHISANIIVERPGQKGI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G+ +K I A+++I +L V L L+VKV DW Sbjct: 245 IIGKGGKMLKKIGTMARQDIERLLGDKVFLQLWVKVVPDW 284 >gi|317049179|ref|YP_004116827.1| GTP-binding protein Era [Pantoea sp. At-9b] gi|316950796|gb|ADU70271.1| GTP-binding protein Era [Pantoea sp. At-9b] Length = 301 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 155/285 (54%), Gaps = 3/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I ++V VVD R + +L ++ ++L +NK+D Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVDGTR-WTPDDEMVLNKLRDGKVPVVLAVNKVD 127 Query: 142 CVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 ++ + LL + + + +SA G D + + LP A + + I+D Sbjct: 128 NIQDKSILLPHLQFLGQQMNFTDIVPISAETGKNVDTIAAIVRKRLPKAEHHFPEEYITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +EI REKL L E+PYS V EK+E + G I +I VER QKK+++ Sbjct: 188 RSQRFMASEIIREKLMRFLGAELPYSVTVEIEKFETNERGGYDISGLILVEREGQKKMVI 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 G G IKTI +EA++++ E+ E VHL L+VKV+ W D + Sbjct: 248 GNKGAKIKTIGIEARRDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|226951499|ref|ZP_03821963.1| GTP-binding protein, 16S rRNA-binding, ribosome-associated GTPase [Acinetobacter sp. ATCC 27244] gi|226837792|gb|EEH70175.1| GTP-binding protein, 16S rRNA-binding, ribosome-associated GTPase [Acinetobacter sp. ATCC 27244] Length = 341 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/312 (33%), Positives = 168/312 (53%), Gaps = 16/312 (5%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 24 FFSSQGTTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSR 83 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++SQ VF+DTPG+ + + +K+M R + S ++ ++V VVD+ + + N +L+++ Sbjct: 84 EKSQAVFVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVVDAQKWTQ-NDELVLEKL 142 Query: 127 AKRSSRLILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 +IL++NK+D K E L E A + F E VSA +G + + + + Sbjct: 143 KNADMPVILVINKLDTFENKNEALPLIQERAKLMNFAE-IVPVSALRGANLEHLRDTIEK 201 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEK 233 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 202 YLPYQPPLYSLDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEK 261 Query: 234 WEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 K I I+VER QK I++G G +K+I ++A+ ++ ++ EQ + L L+VK Sbjct: 262 TGRLKPPCTYIDATIFVERQGQKAIVIGDKGAKLKSIGMDARADMEKMFEQKIMLTLWVK 321 Query: 294 VQKDWGHDPKCC 305 V+ W D + Sbjct: 322 VKGGWSDDERAL 333 >gi|326334918|ref|ZP_08201119.1| GTP-binding protein Era [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692955|gb|EGD34893.1| GTP-binding protein Era [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 292 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 158/284 (55%), Gaps = 4/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G + ++G N GKSTL+N VG ++SI+T K QTTR + GIVS ++ Q++F DTPGI Sbjct: 3 KAGFINIIGNPNVGKSTLLNALVGERLSIITAKAQTTRHRIFGIVSGEDFQMIFSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ + ADI+ +V+ ++LK + K+I + ++L++NK Sbjct: 63 IKPAYQLQSSMMDFVRDAFEDADILIYMVEIGEKDLKD--EEFFKKINEAKVPILLLVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + + + V + + +SA + + + + L LP +P Y DQ++ Sbjct: 121 IDRSDEPSVKQALSYWQEKVPKAEVYPISALENFNVEPLFHRLLELLPPSPAFYPKDQLT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F E REK+ L+ KE+PYS V T+ + E + I IR +I VER SQK I+ Sbjct: 181 DKPERFFVNETIREKILLNYKKEVPYSVEVETQTFSE-TEHIIRIRSIIMVERDSQKGIL 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +G G+ +K + ++A+ ++ + + +HL L+VKV K+W D K Sbjct: 240 IGHKGEALKKVGIQARYDLEKFFGKQIHLELYVKVNKNWRSDLK 283 >gi|167755646|ref|ZP_02427773.1| hypothetical protein CLORAM_01161 [Clostridium ramosum DSM 1402] gi|237734394|ref|ZP_04564875.1| GTP-binding protein [Mollicutes bacterium D7] gi|167704585|gb|EDS19164.1| hypothetical protein CLORAM_01161 [Clostridium ramosum DSM 1402] gi|229382624|gb|EEO32715.1| GTP-binding protein [Coprobacillus sp. D7] Length = 296 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 160/283 (56%), Gaps = 1/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N + K++I++ QTTR+ ++GI ++ E+QI+F+DTPGI Sbjct: 3 KSGFVSIVGRPNVGKSTLLNSILETKLAIMSDVAQTTRNTIQGIHTDDEAQIIFMDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D M + ++I D+V + ++ ++ +++ + + + L+L+KI Sbjct: 63 HKPQDRLGTFMNTTALNSIFGVDLVLFLAPANEKIGRGDKFIIERLKEADGPVFLVLSKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E L+++ + +L ++ +SAT D +L + + LP Y D ++D Sbjct: 123 DTVSKEELIKKLQEWQELFDFKEIIPISATTNDNIDLLLKTVKAYLPEGNMYYPQDHLTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE REK+ +E+P+S +V E+ E + G +I ++ +R SQK I++ Sbjct: 183 HPERFVMAEFIREKILYFTKEEVPHSVAIVIERMLEDEAGVEIIATIV-CDRKSQKGIIV 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 GK G IK I A++E+ L+ PVHL LFVKV+ +W + K Sbjct: 242 GKQGTMIKKIRQNAQREMKRFLQVPVHLELFVKVENNWRNKQK 284 >gi|91794116|ref|YP_563767.1| GTP-binding protein Era [Shewanella denitrificans OS217] gi|91716118|gb|ABE56044.1| GTP-binding protein Era [Shewanella denitrificans OS217] Length = 334 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 165/287 (57%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI ++ SQ+VF+DTPG+ Sbjct: 41 GMVAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRIMGIHTDGPSQVVFIDTPGLHI 100 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILNK 139 + + + ++LM R + S++ +V VVD+ + +LK+I + + +++L +NK Sbjct: 101 DEQRAINRLMNRAAASSLADVSMVIFVVDAM-NWTPDDEMVLKKIGYSDQERKVVLAINK 159 Query: 140 IDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D +K + L EIA K F ++ +SATKG +L+ +LP + + D Sbjct: 160 VDNIKDKEALFPYLNEIAKKFNF-DEILPISATKGTNIQRILDMARESLPEGDFYFPEDY 218 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D +EI REKL L E+PY V E+++ ++G I +I VER QK+ Sbjct: 219 VTDRSQRFMASEIVREKLMRFLGDELPYDCTVEIEQFKMMENGVYQINALILVEREGQKR 278 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +++G G+ I+TI+ +A+ ++ + + V L ++VKV+ W D + Sbjct: 279 MVIGNKGERIRTIATQARLDMENLFDNKVFLEVWVKVKSGWADDERA 325 >gi|145595961|ref|YP_001160258.1| GTP-binding protein Era [Salinispora tropica CNB-440] gi|145305298|gb|ABP55880.1| GTP-binding protein Era [Salinispora tropica CNB-440] Length = 299 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 159/288 (55%), Gaps = 11/288 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG K++I + K QTTR ++R ++ +SQ+V +DTPG+ Sbjct: 11 RAGFGCFVGRPNAGKSTLTNAIVGQKIAITSSKPQTTRHVIRAVLHRPDSQLVLVDTPGL 70 Query: 81 FNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++R +WS + D++ L V + + + E+A+ ++ ++ ++ Sbjct: 71 HRPRTLLGERLNDLVRQTWSEV---DVIGLCVPADEPIGRGDRFISGELAELNATVLAVV 127 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V E+L +Q ++L + VSA GH D +++ + LP +P +Y D Sbjct: 128 TKTDLVDREQLAKQLVAVSELADFAEVVPVSAVSGHQVDTLVDVMTRYLPESPQLYPDDM 187 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQ 255 +++ P AE+ RE + E+P+S VV E+ EE+ + I +YVERPSQ Sbjct: 188 LTEEPEQVLVAELIREAALEGVRDELPHSIAVVVEEMIPEER---VMKIYADVYVERPSQ 244 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++G ++ + + A+++I E+L V+L L V+V KDW DPK Sbjct: 245 KAIVIGHRASRLRDVGIRARRQIEELLGTRVYLDLHVRVAKDWQRDPK 292 >gi|152967328|ref|YP_001363112.1| GTP-binding protein Era [Kineococcus radiotolerans SRS30216] gi|151361845|gb|ABS04848.1| GTP-binding protein Era [Kineococcus radiotolerans SRS30216] Length = 308 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 151/290 (52%), Gaps = 8/290 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG LVG NAGKSTL N VG KV+I + + QTTR VRG+V ++Q+V +DTPG+ Sbjct: 13 RSGFACLVGRPNAGKSTLTNALVGQKVAITSSRPQTTRHTVRGVVHRPDAQLVLVDTPGL 72 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILN 138 + + + T+ DIV L V + ++ + + + K RS+++ L+ Sbjct: 73 HRPRTLLGQRLNDRVHETLAEVDIVALCVPADEKIGPGDRFIAEALGKIPRSTKIGLV-T 131 Query: 139 KIDCVKPERLLEQ-----AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K D +++ EQ A L SA G D V + L S LP+ P +Y Sbjct: 132 KTDKASKQQVAEQLLALTALGEQVLGGFADVVPASAKTGEQVDTVADVLLSHLPVGPRLY 191 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 +++D P AE+ RE + E+P+S VV E+ E ++G + + +YVER Sbjct: 192 PDGELTDEPEAVMVAELVREAALEGVRDELPHSLAVVVEEMTEGENGVLQVFVWLYVERD 251 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++GK G +K + A++ + +L VHL L VKV KDW DPK Sbjct: 252 SQKGIVIGKGGARLKDVGTRARRSVEALLGTRVHLDLRVKVAKDWQRDPK 301 >gi|148543969|ref|YP_001271339.1| GTP-binding protein Era [Lactobacillus reuteri DSM 20016] gi|184153364|ref|YP_001841705.1| GTP-binding protein [Lactobacillus reuteri JCM 1112] gi|227364882|ref|ZP_03848928.1| GTP-binding protein Era [Lactobacillus reuteri MM2-3] gi|325682493|ref|ZP_08162010.1| GTP-binding protein Era [Lactobacillus reuteri MM4-1A] gi|148531003|gb|ABQ83002.1| GTP-binding protein Era [Lactobacillus reuteri DSM 20016] gi|183224708|dbj|BAG25225.1| GTP-binding protein [Lactobacillus reuteri JCM 1112] gi|227070086|gb|EEI08463.1| GTP-binding protein Era [Lactobacillus reuteri MM2-3] gi|324978332|gb|EGC15282.1| GTP-binding protein Era [Lactobacillus reuteri MM4-1A] Length = 301 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 157/280 (56%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG VA++G N GKSTL+N VG KV+I+++ QTTR+ ++GI + E+QI+F+DTP Sbjct: 5 NYKSGFVAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI M + + S + D V VV + + +++ + K + + L++N Sbjct: 65 GIHKPSTKLGDFMEKSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVN 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + P L E + + + +SA +G+ ++++N + LP P Y ADQ+ Sbjct: 125 KIDQINPNDLPEIVDQYKDTLPFKGIVPISALQGNNVNNLINDIIKILPNGPQYYPADQV 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD P AE+ REK+FL +E+P+S V + + + I I I VERP QK I Sbjct: 185 SDHPERFVIAEMIREKVFLLTRQEVPHSVAVDVTSIKREDENHIHISANIIVERPGQKGI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G+ +K I A+++I +L V L L+VKV DW Sbjct: 245 IIGKGGKMLKKIGTMARQDIERLLGDKVFLQLWVKVVPDW 284 >gi|189502490|ref|YP_001958207.1| GTP-binding protein Era [Candidatus Amoebophilus asiaticus 5a2] gi|226741166|sp|B3ETC6|ERA_AMOA5 RecName: Full=GTPase Era gi|189497931|gb|ACE06478.1| hypothetical protein Aasi_1141 [Candidatus Amoebophilus asiaticus 5a2] Length = 296 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 160/280 (57%), Gaps = 6/280 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+NR VG ++SI+T K QTTR + GIVS+ + QI+F DTPGI Sbjct: 7 QAGFVTIIGKPNVGKSTLMNRLVGERLSIITPKAQTTRHSICGIVSDTDFQIIFTDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + M+ + + D++ +VD +E+ + +L A+ ++L++NK Sbjct: 67 LKPAYELQESMMHMLQHALVDTDVLLWLVDIKEKEVPPIVEKVL---AQGRIPVLLLINK 123 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID + + LE E + V + + ++A +G + +L ++ LP P Y D + Sbjct: 124 IDLIAGQEALESLVEYWKQKVNVAQIIPIAALQGFQIEQLLKHILVYLPAHPPFYPKDML 183 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P F AEI RE++ +EIPY+ VV E+++E+ I I +IYVE+ SQK I Sbjct: 184 TDRPERFFVAEIIREQILYKYQQEIPYAVEVVIEEFKEEAS-LIRISAMIYVEKKSQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G+++K + + A++ + + LE+ V L VKV W Sbjct: 243 LIGKQGESLKQVGIAARQALEKFLEKQVFLQQHVKVLPGW 282 >gi|317490529|ref|ZP_07949007.1| GTP-binding protein Era [Eggerthella sp. 1_3_56FAA] gi|316910380|gb|EFV32011.1| GTP-binding protein Era [Eggerthella sp. 1_3_56FAA] Length = 307 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 159/287 (55%), Gaps = 1/287 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V D+ +SG V LVG NAGKSTL+N +G K++I ++ QTTR R ++ + Q++ + Sbjct: 8 VGDSFKSGFVTLVGRPNAGKSTLINAIMGKKIAITSNTAQTTRHRFRAALTREGFQLILV 67 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPG+ D+ + + + ++ D+V +VD+ + + + ++ + S+ IL Sbjct: 68 DTPGLHKPHDALGEELNTSALKALEDVDVVAFLVDASKPVGTGDEWVAAQLKRARSKKIL 127 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +L+KID V E+L Q A +L + +S+ G D ++ + + LP P + Sbjct: 128 VLSKIDLVDGEQLDRQRFAAAQLGDWDAVVELSSQTGEHVQDFVDEVVALLPPGPAWFPT 187 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE-EKKDGSILIRQVIYVERPS 254 D +D P+ AE REK+ H E+P++ V E+ E ++K I ++YVER S Sbjct: 188 DMETDQPIEVVVAEFIREKILRSFHDEVPHAIGVRVEEMEYDRKKDLYRIFAIVYVERDS 247 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G IK I EA++++ ++L V L L VKV+K+W D Sbjct: 248 QKGIIIGKKGAAIKQIGTEARQDLEQLLGCRVFLDLSVKVKKNWRRD 294 >gi|329297706|ref|ZP_08255042.1| GTPase Era [Plautia stali symbiont] Length = 300 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 160/287 (55%), Gaps = 5/287 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 SG +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++DTPG+ Sbjct: 8 SGFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQAIYVDTPGLR 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + ++LM R + S+I ++V VV+ R + +L ++ ++L +NK+ Sbjct: 68 MEEKRAINRLMNRAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKVPVVLAVNKV 126 Query: 141 DCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D ++ + +L ++ ++ F+E +SA G D + LPL+ ++ D I Sbjct: 127 DNIQDKSILLPHLQFLSQQMNFLE-IVPISAETGKNMDAIAEITRKRLPLSDHLFPEDYI 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKL L E+PYS V +++ + G I +I VER QKK+ Sbjct: 186 TDRSQRFMASEIIREKLMRFLGAELPYSVTVEIKQFVSNERGGYDINGLILVEREGQKKM 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++G G IKTI +EA+K++ E+ E VHL L+VKV+ W D + Sbjct: 246 VIGNKGAKIKTIGIEARKDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|297568490|ref|YP_003689834.1| GTP-binding protein Era [Desulfurivibrio alkaliphilus AHT2] gi|296924405|gb|ADH85215.1| GTP-binding protein Era [Desulfurivibrio alkaliphilus AHT2] Length = 308 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 154/284 (54%), Gaps = 11/284 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VALVG NAGKSTL+N +G K+SIV+ K QTTR+ V G+ ++ QIVFLDTPG+ Sbjct: 13 GFVALVGPPNAGKSTLLNNLLGQKISIVSPKPQTTRNRVLGVFNQPTRQIVFLDTPGLHQ 72 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVV-------DSHRELKVNIHDLLKEIAKRSSRLIL 135 + + M++++ T+ D V ++ DS E + LL+ + + +L Sbjct: 73 GRSRLNSEMVKIARRTVSEVDAVAYMIDVSSPEADSRPEQRRQAGQLLQ---RANLPALL 129 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 + NKID V E+LL ++ +SA G G + +L+ L LP P ++ Sbjct: 130 LCNKIDQVGKEKLLPVIAAWQEVYPFAAIIPLSALSGEGQETLLDELTRLLPRGPRLFPE 189 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPS 254 D +D EI REK+ L E+PYS+ V+ +++ E+ + I I VE+ S Sbjct: 190 DIPTDASERFLCGEIIREKIMLLTRDELPYSTAVLIDRFREESAPPLTTIDATIIVEKNS 249 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++G G+ ++ I A++EI +L V L L+VKVQK+W Sbjct: 250 QKGIIIGNRGRMLQQIGRSARREIEAMLGTKVLLKLWVKVQKNW 293 >gi|320547277|ref|ZP_08041569.1| GTP-binding protein Era [Streptococcus equinus ATCC 9812] gi|320448081|gb|EFW88832.1| GTP-binding protein Era [Streptococcus equinus ATCC 9812] Length = 298 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 159/279 (56%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ + ++N L L + DQI+D Sbjct: 123 DKVHPDQLLEQIDDFRSQMDFKEIVPISALQGNNVETLINILKDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE-EKKDGSILIRQVIYVERPSQKKIM 259 P +E+ REK+ +E+P+S V+ + + + + + IR I VER SQK I+ Sbjct: 183 HPERFLVSEMIREKILKLTEQEVPHSVAVIVDSMKRDPETDKVHIRATIMVERDSQKGII 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 243 IGKKGAMLKKIGKMARRDIEIMLGDKVYLETWVKVKKNW 281 >gi|332284935|ref|YP_004416846.1| GTP-binding protein [Pusillimonas sp. T7-7] gi|330428888|gb|AEC20222.1| GTP-binding protein [Pusillimonas sp. T7-7] Length = 295 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 162/289 (56%), Gaps = 23/289 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL N +G+K+SIV+ K QTTR + G+++ Q VF+DTPG Sbjct: 6 RCGFVAVVGRPNVGKSTLTNALIGSKISIVSRKAQTTRHRIHGVLTRDHEQFVFVDTPG- 64 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + + +++M R+ + D+ VV++ + + L + ++ IL +N Sbjct: 65 FQTRHGGTMNRMMNRVVTQALADVDVTVHVVEAGKWSAGDAQ--LLPLLPKTGHTILAVN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM---------VSATKGHGCDDVLNYLCSTLPLA 189 K+D +K + + V++ K VSA +G +++L + + LP Sbjct: 123 KVDALKSKN--------DMFVYVSKIMAQHPYSAVVPVSALRGVQLENLLQEIATRLPEG 174 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 ++ AD ++D PM AE+ REK+F + E+PY VV E+W+E + G+ + I Sbjct: 175 EPMFEADTLTDRPMRFIVAELVREKIFRLVGDELPYGCTVVIEQWDENESGA-RVAACIL 233 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VER + + I+LG G ++K I+ EA++++ ++L++PV L +++KV+K W Sbjct: 234 VERETHRPILLGAGGAHMKRIATEARQDMVKLLDKPVFLDVYIKVRKGW 282 >gi|261340867|ref|ZP_05968725.1| GTP-binding protein Era [Enterobacter cancerogenus ATCC 35316] gi|288317298|gb|EFC56236.1| GTP-binding protein Era [Enterobacter cancerogenus ATCC 35316] Length = 301 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 162/292 (55%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G +A+VG N GKSTL+N +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EEKTYCGFIAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKTPVIL 121 Query: 136 ILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D V K + L + +++ F++ +SA G D + + LP A + Sbjct: 122 AVNKVDNVQEKADLLPHLQWLGSQMNFLD-IVPLSAETGLNVDTIAGIVRKHLPEAIHHF 180 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D I+D +EI REKL L E+PYS V E+++ + G I +I VER Sbjct: 181 PEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFQTNERGGYDINGLILVERE 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 241 GQKKMVIGNKGAKIKTIGIEARKDMMEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|87125491|ref|ZP_01081336.1| GTP-binding protein ERA-like protein [Synechococcus sp. RS9917] gi|86166791|gb|EAQ68053.1| GTP-binding protein ERA-like protein [Synechococcus sp. RS9917] Length = 311 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 164/294 (55%), Gaps = 9/294 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q RSG VAL+G N GKSTLVN+ VG KV+I + QTTR+ +R I++ E+Q++ +D Sbjct: 8 QTPHRSGFVALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTPEAQLILVD 67 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPGI + +++ + S I D+V L+++ +++ + ++ ++++ Sbjct: 68 TPGIHKPHHLLGERLVQSARSAIGEVDLVLLLLEGCEAPGRGDAFIIQLLQQQRLPVLVV 127 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVY 193 LNK D V ER E A++A + + + V SA G GC +++ + + LP P +Y Sbjct: 128 LNKWDRVPAERRPE-ADLAYRELLETPDWPVHHCSALSGAGCPELVQAIAARLPEGPQLY 186 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-----KKDGSILIRQVI 248 AD +SD P AE+ RE++ L +EIP+S V ++ +E K + + Sbjct: 187 PADMVSDQPERLLMAELIREQVLLQTREEIPHSVAVQIDRVDEMPSKGKGKSCTAVLATV 246 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 VER SQK I++GK G +KTI A+ ++ +++ PV+L LFVKV DW P Sbjct: 247 LVERKSQKGILIGKGGAMLKTIGQGARLQMQTLIDGPVYLELFVKVVPDWRSKP 300 >gi|227495954|ref|ZP_03926265.1| GTP-binding protein Era [Actinomyces urogenitalis DSM 15434] gi|226834508|gb|EEH66891.1| GTP-binding protein Era [Actinomyces urogenitalis DSM 15434] Length = 351 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 158/302 (52%), Gaps = 12/302 (3%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +D R+G LVG NAGKSTL N VG+KV+I + + QTTR VRG+V +++Q+V Sbjct: 45 DFPED-FRAGFACLVGRPNAGKSTLTNALVGSKVAITSGRPQTTRHNVRGVVHREDAQLV 103 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DTPG+ K K + L T+ D+V + ++ ++ + +++ + + + Sbjct: 104 LVDTPGLHRPKTLLGKRLNDLVRETLTDVDVVAFCIPANEKIGPGDRFIARDLEQVRAPI 163 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 + ++ K D V + L Q N+L VSA G D V + L LP +P +Y Sbjct: 164 VAVVTKADTVSRQALAAQLLAVNELGDWADIVPVSAVSGEQVDVVADVLMGHLPPSPPLY 223 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYS-SCVVTEKWEEKKD--GS--------I 242 +++D P E+ RE + E+P+S + VV E + + D GS + Sbjct: 224 PTGEVTDEPQAVMIGELVREAALESVRDELPHSLAVVVDEILDPRTDRTGSRVKGAGERL 283 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 +R + VER SQK IM+GK G +K I + A+ I E++ + V+L L V+ KDW DP Sbjct: 284 QVRVSLVVERDSQKAIMIGKGGSRLKEIGVRARAGIEELIGRKVYLDLHVRTSKDWQSDP 343 Query: 303 KC 304 K Sbjct: 344 KA 345 >gi|326773544|ref|ZP_08232827.1| GTP-binding protein Era [Actinomyces viscosus C505] gi|326636774|gb|EGE37677.1| GTP-binding protein Era [Actinomyces viscosus C505] Length = 397 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 160/302 (52%), Gaps = 12/302 (3%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +D R+G +VG NAGKSTL N VGAK++I + + QTTR VRG++ ++ +QIV Sbjct: 91 DFPED-FRAGFACIVGRPNAGKSTLTNAMVGAKIAITSGRPQTTRHNVRGVIHKENAQIV 149 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DTPG+ + K + L T+ D+V + ++ ++ + +++A+ + + Sbjct: 150 LVDTPGLHRPRTLLGKRLNDLVRETLADVDVVVFCIPANEKIGPGDRFITRDLAELRTPV 209 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 + ++ K D V E L Q ++L VSA + D + L +PL+P +Y Sbjct: 210 VAVVTKADTVTREALAAQLLAVSELGEWADIVPVSAQRNEQIDVLEEVLLKYMPLSPPLY 269 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-----------GSI 242 +I+D P AE+ RE + E+P+S VV ++ + D G + Sbjct: 270 PTGEITDEPQQVMIAELVREAALEGVRDELPHSLAVVVDEIADPDDEREVGRIKGAGGRL 329 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 +R + VER SQK I++GK G+ +K + + A+K I ++L + V+L L V+ KDW DP Sbjct: 330 QVRVSLVVERDSQKAIIIGKGGRRLKEVGVTARKGIEQLLGRKVYLDLHVRTAKDWQSDP 389 Query: 303 KC 304 K Sbjct: 390 KA 391 >gi|159039359|ref|YP_001538612.1| GTP-binding protein Era [Salinispora arenicola CNS-205] gi|157918194|gb|ABV99621.1| GTP-binding protein Era [Salinispora arenicola CNS-205] Length = 300 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 96/296 (32%), Positives = 160/296 (54%), Gaps = 11/296 (3%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 ++ Q R+G VG NAGKSTL N VG K++I + K QTTR ++R ++ +SQ+ Sbjct: 4 EELQQRPYRAGFGCFVGRPNAGKSTLTNAIVGQKIAITSSKPQTTRHVIRAVLHRPDSQL 63 Query: 73 VFLDTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 V +DTPG+ + + ++R +WS + D++ L V + + + E+A+ Sbjct: 64 VLVDTPGLHRPRTLLGERLNDLVRQTWSEV---DVIGLCVPADEPIGRGDRFISGELAEL 120 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + ++ ++ K D V +RL EQ ++L + VSA G D +++ + LP + Sbjct: 121 KATVLAVVTKTDLVDRKRLAEQLVAVSELADFAEVVPVSAVSGQQIDTLVDVMTRYLPES 180 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQV 247 P +Y D +++ P AE+ RE + E+P+S VV E+ EE+ I I Sbjct: 181 PQLYPDDMLTEDPEQVLVAELIREAALEGVRDELPHSIAVVVEEMIPEER---VIKIYAD 237 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +YVERPSQK I++G ++ + + A+++I E+L V+L L V+V KDW DPK Sbjct: 238 VYVERPSQKAIVIGHRASRLRDVGVRARRQIEELLGTRVYLDLHVRVAKDWQRDPK 293 >gi|317969119|ref|ZP_07970509.1| GTP-binding protein Era-like protein [Synechococcus sp. CB0205] Length = 327 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 155/278 (55%), Gaps = 1/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG N GKSTL+N+ VG KV+I + QTTR+ +R I++ +Q+V +DTPGI Sbjct: 35 RSGFVALVGRPNVGKSTLMNQLVGEKVAITSPVAQTTRNRLRAILTTPTAQLVLVDTPGI 94 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + +++ + I D V L+VD + +++ + + + + LNK Sbjct: 95 HKPHHLLGERLVQTARGAIGEVDQVLLLVDGSQAAGRGDGFIVELLERIKVPVQVALNKS 154 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P + E +LV VSA G G + +++ L + LP P +Y D +SD Sbjct: 155 DLVDPAQAAELEASYRELVPGWPLHPVSALNGEGTEALVSALAAELPEGPHLYPPDAVSD 214 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ RE++ H +EIP+S V E+ + K+ + ++ V+ VER SQK I++ Sbjct: 215 QPEQLLLAELIREQVLQHTREEIPHSVAVQIERVVDDKERTAVLATVL-VERNSQKGILI 273 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G ++ I A++++ +++ PV+L LFVKV +W Sbjct: 274 GKGGSMLRQIGTGARQQMQKLIAGPVYLELFVKVVPNW 311 >gi|168485921|ref|ZP_02710429.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1087-00] gi|183571044|gb|EDT91572.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1087-00] Length = 299 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 164/282 (58%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLDEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I ER SQK Sbjct: 182 TDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMAERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|270292907|ref|ZP_06199118.1| GTP-binding protein Era [Streptococcus sp. M143] gi|270278886|gb|EFA24732.1| GTP-binding protein Era [Streptococcus sp. M143] Length = 299 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 161/281 (57%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKI 123 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI+ Sbjct: 124 DKVHPDQLLAQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLEEGFQYFPSDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 242 IIIGKGGTMLKKIGSLARRDIELMLGDKVFLETWVKVKKNW 282 >gi|168062875|ref|XP_001783402.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665100|gb|EDQ51796.1| predicted protein [Physcomitrella patens subsp. patens] Length = 312 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 160/298 (53%), Gaps = 14/298 (4%) Query: 11 EHKDFV--QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 E +DF +++ RS V +VG+ NAGKSTL N VG+KVS V+ K TT GI+++ Sbjct: 15 EEEDFAVSEEDQRSLRVGVVGSPNAGKSTLTNHLVGSKVSAVSRKTNTTHKEHMGILTKG 74 Query: 69 ESQIVFLDTPGIF-----NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIH 120 +SQ++F DTPG+ + + ++ +R +W T + + + ++VD+HR+++ + Sbjct: 75 DSQLIFFDTPGLTVDVRGHPLRTDNRNRVRSAWQTAELCEALIVLVDAHRQIERPDKRVT 134 Query: 121 DLLKEIAKR---SSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCD 176 L++++ S + IL NK+D V P+R LL AE TFM+SA G G D Sbjct: 135 RLVEKLGNEEVLSQKKILCFNKVDLVHPKRLLLPLAEEYGNYPAFNSTFMISALTGDGVD 194 Query: 177 DVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE 236 + YL PW + EI R+ +F LHKE+PY W Sbjct: 195 ALQQYLLDQAVPRPWEEEPEARPQRLARATALEIVRQHIFDCLHKELPYRIEQRHLSWRV 254 Query: 237 KKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 KDGSI I ++ VE+ +KI++GKNG I+ I A+ E+ ++L VHLIL VKV Sbjct: 255 LKDGSIRIHHLLLVEKEGHRKILVGKNGDVIRRIGTVARMELQKVLNNTVHLILDVKV 312 >gi|322509029|gb|ADX04483.1| era [Acinetobacter baumannii 1656-2] Length = 340 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 102/310 (32%), Positives = 169/310 (54%), Gaps = 14/310 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 23 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSC 82 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+ + + N +L+++ Sbjct: 83 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAQKWTQ-NDDLVLEKL 141 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D +R +L + KL+ + VSA +G + + + Sbjct: 142 KNADMPVILVINKADTFGDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKY 201 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 202 LPYQPPLYSIDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKT 261 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+RP QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 262 GRLKPACTYIDATIFVDRPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKV 321 Query: 295 QKDWGHDPKC 304 + W D + Sbjct: 322 KGGWSDDERA 331 >gi|224138540|ref|XP_002326628.1| predicted protein [Populus trichocarpa] gi|222833950|gb|EEE72427.1| predicted protein [Populus trichocarpa] Length = 428 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 155/288 (53%), Gaps = 11/288 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + +S V ++GA NAGKS L N VG KV+ V+ K TT V G++++ ++QI F DTP Sbjct: 141 DQKSLSVGIIGAPNAGKSALTNFMVGTKVAAVSRKTNTTTHEVLGVMTDGDTQICFFDTP 200 Query: 79 GIF--NAKDSYHKLMIRL--SWSTIKHADIVCLVVDSHRELK------VNIHDLLKEIAK 128 G+ N Y + R+ +WS++ D++ ++ D HR L V + + A Sbjct: 201 GLMVNNRGYPYKDMKTRVESAWSSVDLYDVLMVIFDVHRHLTRPDSRVVGLIKCMGAQAN 260 Query: 129 RSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +L +NKID V K + LL+ E L ++ FM+S KG G + YL Sbjct: 261 PKQKRVLCMNKIDLVEKKKDLLKVVEEFKDLPGYDRHFMISGLKGSGVKHLNQYLMEQAV 320 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 PW +S+ M + + E+ RE+L H+H+EIPY W+E +DGS+ I Q Sbjct: 321 KRPWDEDPLSMSEEVMKNISLEVVRERLLDHVHQEIPYGIDHRLMDWKELRDGSLRIEQH 380 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 + SQ+KI++GK G I I +EA +E+ I ++ VHLIL V+++ Sbjct: 381 FITPKLSQRKILVGKKGSKIGRIGVEANEELRSIFKREVHLILQVRIK 428 >gi|114320504|ref|YP_742187.1| GTP-binding protein Era [Alkalilimnicola ehrlichii MLHE-1] gi|114226898|gb|ABI56697.1| GTP-binding protein Era [Alkalilimnicola ehrlichii MLHE-1] Length = 315 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 167/294 (56%), Gaps = 20/294 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VALVG N GKSTL+N+ +G K+SIVT K QTTR + G+ +QIV++DTPG+ Sbjct: 23 RCGHVALVGRPNVGKSTLLNQLLGQKISIVTRKPQTTRQRILGVCHRDGAQIVYVDTPGL 82 Query: 81 FNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +D + ++ + R + + + D+V +VD K +L+ + +R +IL +NK Sbjct: 83 HQRRDKALNRYLNRTAANALADVDLVVFLVD-RLHFKPEDEAVLERLKRRDVPVILAINK 141 Query: 140 IDCVKPERLLEQAE-------IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +D RL ++A+ ++ + F+E +SA KG + + LP +P + Sbjct: 142 VD-----RLRDKAQLLPHIQWLSEQHPFVE-VVPLSALKGENLAPLEEAILRQLPESPPL 195 Query: 193 YSADQISDL-PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYV 250 + D I+D P F AE+ RE+L HL +E+PY++ V E ++ +G + I +I+V Sbjct: 196 FPEDYITDRGPRFRI-AELIREQLMRHLGEELPYATAVEVEAMDQ--EGQLTRISALIWV 252 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ERP QK I++G GQ +K I A++EI ++L V L L+VKV++ W D + Sbjct: 253 ERPGQKAIVIGDGGQRLKVIGSRARQEIQQLLGGRVFLQLWVKVREGWSDDERA 306 >gi|326779457|ref|ZP_08238722.1| GTP-binding protein Era [Streptomyces cf. griseus XylebKG-1] gi|326659790|gb|EGE44636.1| GTP-binding protein Era [Streptomyces cf. griseus XylebKG-1] Length = 321 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 161/297 (54%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 21 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRDDAQLILVDTPGL 80 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L ++KE+A R + I I Sbjct: 81 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDKYIVKELAGIRKTPKIAI 137 Query: 137 LNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V+ + L EQ + +A +L F + VSA D + + + LP++P Sbjct: 138 ITKTDLVESKALAEQLLAVSALAEELGFEWAEIVPVSAVGDKQVDLLADLIAPLLPVSPP 197 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSIL-IRQ 246 +Y ++D P AE+ RE + E+P+S VV E + + D +L I Sbjct: 198 LYPEGDLTDEPEMVMVAELIREAALEGVRDELPHSIAVVVEEMLPRTDRPADKPLLDIHA 257 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G GQ +K + +++K I +L PV L L VKV KDW DPK Sbjct: 258 NVYIERPSQKGIIIGPKGQRLKDVGTKSRKHIEALLGTPVFLDLHVKVAKDWQRDPK 314 >gi|110798867|ref|YP_696695.1| GTP-binding protein Era [Clostridium perfringens ATCC 13124] gi|123148605|sp|Q0TNU5|ERA_CLOP1 RecName: Full=GTPase Era gi|110673514|gb|ABG82501.1| GTP-binding protein Era [Clostridium perfringens ATCC 13124] Length = 296 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 156/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + +VG N GKSTL N +G K+SIV++K QTTR+ ++ I++ ++ Q++F+DTPGI Sbjct: 3 KSGFITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGEDYQMIFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + +IK D+V + + E+ +++++ + + +I +LNK+ Sbjct: 63 HKPKHKLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIIEQLKNQKAPVIFVLNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D PE++ + E+ +K + +SA K D +L + LP P Y D I+D Sbjct: 123 DESSPEKVAKTLELFSKEYDFAEMIPISAMKAKNTDKLLELMVKYLPEGPKYYPDDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + AEI REK +L +E+P+ V + ++ +G I + E+ S K I++ Sbjct: 183 VQERFVVAEIVREKALKNLSQEVPHGIAVDVIQMKQDDNGKYNIEVDLICEKASHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNGQ +K I A+ E+ L V++ ++VKV+K+W Sbjct: 243 GKNGQTLKKIGSTARYELERFLRAKVNIKIWVKVRKEW 280 >gi|332140433|ref|YP_004426171.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype'] gi|332141898|ref|YP_004427636.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype'] gi|327550455|gb|AEA97173.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype'] gi|327551920|gb|AEA98638.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype'] Length = 303 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 165/290 (56%), Gaps = 9/290 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+NR +G KVSI + K QTTR + GI ++ + Q +++DTPG Sbjct: 6 TRCGLVAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTDGDYQAIYVDTPG 65 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILI 136 + + K + ++ M R + S++ +V VV+ R N D +L ++ + + LI Sbjct: 66 LHQDEKRAINRYMNRAASSSLAEVGLVLFVVEGDR---FNAEDEMVLSKVKQANLPCYLI 122 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V K ++ ++ K F E +SA +G D + + +LP + + + Sbjct: 123 VNKMDKVEDKENFMVHLQKLGEKHPF-EHIVPISAKQGKMVDGIRELVAESLPKSEFFFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D AEI REKL E+PYS+ V E+++ +G I +I VER + Sbjct: 182 EDYITDRSSRFMAAEIIREKLMRFTGDELPYSTTVEIEQFKMADNGVYRINGLILVERET 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QK++++GK G+++KTI +A+K++ + + V L L+VKV++ W D + Sbjct: 242 QKRMVIGKGGKHLKTIGEQARKDMENLFDNKVFLELWVKVKQGWADDERA 291 >gi|319952376|ref|YP_004163643.1| gtp-binding protein era-like-protein [Cellulophaga algicola DSM 14237] gi|319421036|gb|ADV48145.1| GTP-binding protein Era-like-protein [Cellulophaga algicola DSM 14237] Length = 295 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 154/278 (55%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIV+ + Q++ DTPGI Sbjct: 5 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGDDFQMILSDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 M+ S + ADI+ +V+ E + +++ ++L+LNKI Sbjct: 65 IKPAYELQSSMMDFVKSAFEDADILIYMVEIG-EKALKDERFFEKLKNSKIPVLLLLNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L Q + ++ + + +SA + +V + LP++P Y DQ++D Sbjct: 124 DVSEQGILEAQVQYWHEQLPTAEIHPISALQNFNVKEVFLRILELLPVSPAFYPKDQLTD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F E REK+ + KEIPYS + TE++ E D I +R VI VER SQK I++ Sbjct: 184 KPERFFVNETIREKILQNYKKEIPYSVEIDTEEFFE-DDKIIRMRSVIMVERESQKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K + +E++K++ ++ VHL L+VKV K+W Sbjct: 243 GHKGAALKRVGVESRKDLEIFFDKQVHLELYVKVNKNW 280 >gi|317125259|ref|YP_004099371.1| GTP-binding protein Era [Intrasporangium calvum DSM 43043] gi|315589347|gb|ADU48644.1| GTP-binding protein Era [Intrasporangium calvum DSM 43043] Length = 322 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 155/292 (53%), Gaps = 9/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G LVG NAGKSTL N VG KV+I + K QTTR +RG+ + +Q++ +DTPG+ Sbjct: 24 RAGFACLVGRPNAGKSTLTNALVGQKVAITSSKPQTTRHTIRGVATTSTAQLILVDTPGL 83 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSR---LILI 136 + + + L T+ D+V + + + + + +E+ + RS R ++ I Sbjct: 84 HKPRTLLGERLNDLVRETLLEVDVVGFCLPADQRIGPGDAFIARELEELRSVRRRPVVAI 143 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K D V ERL E ++L E SA G ++V + L S LP +P +Y Sbjct: 144 ATKADTVDRERLAEHLITIDRLGDWEAIIPCSAVSGDQVEEVRDVLASYLPESPQLYPDG 203 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK----DGSIL-IRQVIYVE 251 ++D P AE+ RE + E+P+S VV E+ ++ D +L +R ++VE Sbjct: 204 VLTDEPEAIMIAELVREAALEGVRDELPHSLAVVVEEMVPREGRPADNPLLDVRVNVFVE 263 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 RPSQK I++G+ G ++ + A+K I +L Q V+L L VKV KDW DPK Sbjct: 264 RPSQKAIVIGRGGSRLREVGTNARKAIEALLGQRVYLDLHVKVAKDWQRDPK 315 >gi|224368191|ref|YP_002602354.1| Era [Desulfobacterium autotrophicum HRM2] gi|223690907|gb|ACN14190.1| Era [Desulfobacterium autotrophicum HRM2] Length = 300 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 159/294 (54%), Gaps = 2/294 (0%) Query: 13 KDFVQDNS-RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 KD Q+ ++G +A+VGA NAGKSTL+N +G K+SI + K QTTR + G+V +Q Sbjct: 3 KDTPQETDFKAGFIAIVGAPNAGKSTLLNTVLGQKISITSKKPQTTRDRILGVVERPGAQ 62 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 I+F+DTPGI A +K ++ + S + D V L++D + + +++++ KR+ Sbjct: 63 IIFVDTPGIHRAHSLLNKKIVDQALSAVDDVDAVLLMIDVTSKDTESEALIIEQLQKRNK 122 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ++L LNKID VK +L L + VSA G + +L + LP Sbjct: 123 AVVLALNKIDLVKSNEILPLIARYASLHEFKAVIPVSAKTGDQTEKLLAEVQRCLPPGQR 182 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 ++ D ++D+ E+ REK+F EIPYS V + ++E + I I+V+ Sbjct: 183 LFPKDTLTDVSQRFIAGEMIREKVFRLTGMEIPYSIAVTVDAFKETPRLT-EIHATIHVD 241 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R SQK I++GK GQ +K I +A+ +I + V L LFV+V K+W D + Sbjct: 242 RDSQKGIIIGKGGQMLKQIGAKARMDIQRMTGTKVMLKLFVRVTKNWSRDERIM 295 >gi|332992354|gb|AEF02409.1| GTPase Era [Alteromonas sp. SN2] Length = 303 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 98/293 (33%), Positives = 165/293 (56%), Gaps = 9/293 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D +R G VA+VG N GKSTL+NR +G KVSI + K QTTR + GI +E + Q +++D Sbjct: 5 NDTTRCGLVAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTEGDYQAIYVD 64 Query: 77 TPGIFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRL 133 TPG+ + K + ++ M R + S++ +V V++ R N D +L ++ Sbjct: 65 TPGLHSEEKSAMNRYMNRAASSSLAEVGLVLFVIEGTR---WNDDDEMVLSKVKASGLPC 121 Query: 134 ILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 LI+NK+D V K ++ ++ K F E +SA +G DD+ + +LP + + Sbjct: 122 YLIVNKMDKVDDKEAFMVHLQGLSEKYKF-EHIIPISAKQGKMVDDIRELVAKSLPESEF 180 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + D I+D AEI REKL E+PY++ V E+++ ++G I +I VE Sbjct: 181 FFPEDYITDRSSRFMAAEIIREKLMRFTGDELPYATTVEIEQFKLAENGVYRISGLILVE 240 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 R +QK++++GK G+++KTI A+K++ + + V L ++VKV++ W D + Sbjct: 241 RETQKRMIIGKGGKHLKTIGEHARKDMENLFDNKVFLEMWVKVKQGWADDERA 293 >gi|293609825|ref|ZP_06692127.1| GTP-binding protein,16S rRNA-binding [Acinetobacter sp. SH024] gi|292828277|gb|EFF86640.1| GTP-binding protein,16S rRNA-binding [Acinetobacter sp. SH024] Length = 342 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 101/311 (32%), Positives = 170/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+++ + N +L+++ Sbjct: 85 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQ-NDDLVLEKL 143 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D + +R +L + KL+ + VSA +G + + + Sbjct: 144 KNAEMPVILVINKADTFEDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKY 203 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 204 LPYQPPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKT 263 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+R QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 264 GRLKPACTYIDATIFVDRAGQKAIVIGEKGTKLKTIGMDARKDMEKMFEQKIMLTLWVKV 323 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 324 KGGWSDDERAL 334 >gi|217970712|ref|YP_002355946.1| GTP-binding protein Era [Thauera sp. MZ1T] gi|217508039|gb|ACK55050.1| GTP-binding protein Era [Thauera sp. MZ1T] Length = 309 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 169/293 (57%), Gaps = 9/293 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D R+G VA+VG N GKSTL+NR +G K+SIV+ K QTTR V GI++E +Q VF+D Sbjct: 16 EDGFRAGFVAIVGRPNVGKSTLLNRLIGQKISIVSSKAQTTRHRVTGILTEPGAQFVFVD 75 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG + +++ ++ M R + D+V V+++ R + +L I + SS++IL Sbjct: 76 TPGFQTHHRNALNRSMNRTVSQVLADVDLVFFVIEAGR-FTEDDRKVLAVIPE-SSKVIL 133 Query: 136 ILNKIDCVKPE-RLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++NK+D +K + RLL A++ F E +SA KG D+++ LP+ ++ Sbjct: 134 VINKVDQLKDKTRLLPFIAQVREARDFTE-IVPLSAEKGRNVDELVKAATPLLPVGTPMF 192 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVER 252 D+I+D +E REKLF L E+PY V EK+E +G++ I + V++ Sbjct: 193 EEDEITDRSERFLASEFLREKLFRLLGDELPYGIAVEIEKFE--VEGNLRRIYAAVIVDK 250 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 P K +++G+ G+ +K IS EA+ E+ ++ + V L ++VKV+ W D + Sbjct: 251 PGHKSMVIGRGGEKLKRISSEARVELEKLFDGKVFLEVWVKVKSGWADDERAL 303 >gi|308810845|ref|XP_003082731.1| Ras-like GTPase ERA (ISS) [Ostreococcus tauri] gi|116061200|emb|CAL56588.1| Ras-like GTPase ERA (ISS) [Ostreococcus tauri] Length = 327 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 161/306 (52%), Gaps = 30/306 (9%) Query: 21 RSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 R GC VALVGA NAGKS L N VG VS V+ K TTR G + ++Q+V Sbjct: 5 RDGCFLERCARVALVGAPNAGKSALANALVGDTVSAVSRKTNTTRRRAIGCRTVGDAQVV 64 Query: 74 FLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIA 127 +D PG+ +++ H + ++ T D + LVVD+ R+L+ I D+++ + Sbjct: 65 IVDAPGVVGREHYRNAAHGRKVEHAFETAAECDALALVVDARRQLERRDTRILDIVRRVR 124 Query: 128 KR----------SSRLILILNKIDCVKPE------RLLEQAEIANKLVF-IEKTFMVSAT 170 + +R +L+LNK+D V E ++++ + A F ++ F VSA Sbjct: 125 EAMDEIREDKGADARAVLVLNKVDDVPKELRAGLVKMVDDFQKAGGEGFKFDRVFPVSAL 184 Query: 171 KGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVV 230 G G +L YL T P APW + + SD+ EI RE ++ L+ EIPY + Sbjct: 185 TGAGTRALLEYLLDTAPEAPWEFDPMKSSDMTDAQRALEIVRESVYNRLNAEIPYEVDIA 244 Query: 231 TEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLIL 290 WE+ ++G + I Q + V+ SQ+KI++GK+G+ I I + A+ + +L + VHLIL Sbjct: 245 HVSWEDFRNGDVRIEQNVLVDTASQRKIVVGKSGEVIGQIGISARVLLEHVLRRKVHLIL 304 Query: 291 FVKVQK 296 V+++K Sbjct: 305 NVRLKK 310 >gi|94993785|ref|YP_601883.1| GTP-binding protein Era [Streptococcus pyogenes MGAS10750] gi|189037676|sp|Q1J822|ERA_STRPF RecName: Full=GTPase Era gi|94547293|gb|ABF37339.1| GTP-binding protein era [Streptococcus pyogenes MGAS10750] Length = 298 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 159/280 (56%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LL Q + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 123 DKVHPDQLLAQIDDFRSQMEFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 183 HPERFLVSEMIREKVLHLTQQEVPHSVAVVVESMKRDEETD-KVHIRATIMVERDSQKGI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 242 IIGKQGAMLKKIGKMARRDIELMLGDKVYLETWVKVKKNW 281 >gi|209528109|ref|ZP_03276585.1| GTP-binding protein Era [Arthrospira maxima CS-328] gi|209491468|gb|EDZ91847.1| GTP-binding protein Era [Arthrospira maxima CS-328] Length = 310 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 162/285 (56%), Gaps = 14/285 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N+ VG K++I + QTTR+ +RGI++ + +QI+F+DTPGI Sbjct: 17 KSGFVGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTESAQIIFVDTPGI 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K++++ + I D++ VVDS ++ + +IL LNK Sbjct: 77 HKPHHQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGLNKW 136 Query: 141 DCVKPERL------LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D ++P++ +Q AN+ ++ SA+ G G + + N L ++L P+ Y Sbjct: 137 D-LQPDQYEAIDQSYQQFAEANQWQMVK----FSASTGAGLETLQNLLINSLDPGPYYYP 191 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 D ++D P E+ RE++ LH +E+P+S + +K EE D I I I+VER Sbjct: 192 PDLVTDQPERFIMGELIREQILLHTREEVPHSVAIAIDKVEE--DVKITRILATIHVERL 249 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GK GQ +KTI A+++I ++++ V+L LFV+VQ W Sbjct: 250 SQKGILIGKGGQMLKTIGSAARQQIQKLVDGKVYLELFVRVQPKW 294 >gi|322385835|ref|ZP_08059478.1| GTP-binding protein Era [Streptococcus cristatus ATCC 51100] gi|321270120|gb|EFX53037.1| GTP-binding protein Era [Streptococcus cristatus ATCC 51100] Length = 299 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 162/281 (57%), Gaps = 5/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K+ I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIVIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVEAAYSTLREVDTVLFMVPAD-EPRGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V P++LL Q + + + ++ +SA +G+ +++ L L + DQI+ Sbjct: 123 IDKVHPDQLLAQIDDFRQQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPEDQIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKK 257 D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 183 DHPERFLVSEMIREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L + L +VKV+K+W Sbjct: 242 IIIGKGGSMLKKIGSMARRDIELMLGDKIFLETWVKVKKNW 282 >gi|254519865|ref|ZP_05131921.1| GTP-binding protein Era [Clostridium sp. 7_2_43FAA] gi|226913614|gb|EEH98815.1| GTP-binding protein Era [Clostridium sp. 7_2_43FAA] Length = 296 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 159/278 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N +G K+SIV++K QTTR+ ++ I++ K+ Q+VF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNHIMGEKLSIVSNKPQTTRNNIQTILTGKDHQLVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + +IK D+V +++ E+ +++ + + + + L++NKI Sbjct: 63 HKPKHKLGEYMVNSAKDSIKEVDLVLFLINPEEEIGRGDKFIIETLKNQKAPVFLVVNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ER+ + ++ + + ++ +SA +G D ++ + T+P P Y D I+D Sbjct: 123 DEFTQERVAKTLQMYSSELEFKEIIPISALRGKNVDKLVELMIETMPEGPKYYPDDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + +EI REK L +EIP+ V + ++ G+ I + E+ S K I++ Sbjct: 183 VQERFVVSEIVREKALRTLREEIPHGIAVDIIQMKQSPSGTWHIEVDMLCEKDSHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNGQ +K I A+ EI + L V+L ++VKV+K+W Sbjct: 243 GKNGQCLKKIGESARYEIEKFLGAKVNLKIWVKVRKEW 280 >gi|325123051|gb|ADY82574.1| GTP-binding protein Era [Acinetobacter calcoaceticus PHEA-2] Length = 340 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 101/311 (32%), Positives = 170/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 23 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 82 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+++ + N +L+++ Sbjct: 83 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQ-NDDLVLEKL 141 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D + +R +L + KL+ + VSA +G + + + Sbjct: 142 KNAEMPVILVINKADTFEDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKY 201 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP P +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 202 LPYQPPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKT 261 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+R QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 262 GRLKPACTYIDATIFVDRAGQKAIVIGEKGTKLKTIGMDARKDMEKMFEQKIMLTLWVKV 321 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 322 KGGWSDDERAL 332 >gi|323141988|ref|ZP_08076839.1| ribosome biogenesis GTPase Era [Phascolarctobacterium sp. YIT 12067] gi|322413520|gb|EFY04388.1| ribosome biogenesis GTPase Era [Phascolarctobacterium sp. YIT 12067] Length = 287 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 154/282 (54%), Gaps = 1/282 (0%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKSTL N +G K++I++ + QTTR+ + I++ +QI+FLDTPGI + Sbjct: 1 MVGRPNVGKSTLTNSLIGEKIAIMSDRPQTTRNKIMCIMNTDNAQIMFLDTPGIHKPQHK 60 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID-CVKP 145 + M+R + ST++ D+V VVD+ + +L + K + +IL++NKID Sbjct: 61 LGEYMVRTAESTLQEVDVVLFVVDATEKRGAGEDYILNLLQKVKTPVILVVNKIDKLADK 120 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 ++L + E NKL VSA ++ + LP P + D I+D P Sbjct: 121 QKLFQIMEGYNKLYKFAAIVPVSALNDSEFPGLVQEITKHLPEGPAYFPEDMITDQPERV 180 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 AE+ REK+ EIP+S V ++++E+ + ++ IR I+VER SQK I++G G Sbjct: 181 IAAEMIREKVLRLTRDEIPHSVAVEVDEFKERDEENVYIRATIFVERESQKGIVIGAKGS 240 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +K I +A+ +I +L V L L+VKV+ DW + K Q Sbjct: 241 LLKKIGQQARADIENLLYCKVFLDLWVKVKADWRNKDKALKQ 282 >gi|256026685|ref|ZP_05440519.1| GTP-binding protein Era [Fusobacterium sp. D11] gi|289764681|ref|ZP_06524059.1| GTP binding protein [Fusobacterium sp. D11] gi|289716236|gb|EFD80248.1| GTP binding protein [Fusobacterium sp. D11] Length = 298 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 102/285 (35%), Positives = 162/285 (56%), Gaps = 11/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + M ++ + +K DI+ ++D+ + + + D + E AK+ + IL++ Sbjct: 62 HKPQHLLGEYMTNIAVNILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPK-ILLV 120 Query: 138 NKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D + ++ + EI KL +K S G +L L L Y D Sbjct: 121 NKVDLISDEQKEEKLKEIEEKLGNFDKIIFASGMYSFGISQLLEALDPYLEEGVKYYPDD 180 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVV---TEKWEEKKDGSILIRQVIYVERP 253 +D+ + EI REK+ L EIP+S V E+ E KKD + IYVER Sbjct: 181 MYTDMSTYRIITEIVREKILLKTRDEIPHSVAVEIINVERKEGKKDKFDI---NIYVERD 237 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GKNG+ +K I +EA+KEI E+L + ++L L+VKV+ DW Sbjct: 238 SQKGIIIGKNGKMLKEIGVEARKEIEELLGEKIYLGLWVKVKDDW 282 >gi|119713602|gb|ABL97653.1| GTP-binding protein Era [uncultured marine bacterium EB0_39H12] Length = 297 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 170/290 (58%), Gaps = 9/290 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG TNAGKSTL+N +G K++I + K QTTR +GI ++ ++QI+F+DTPG Sbjct: 5 KSGYVSIVGKTNAGKSTLLNNILGQKIAITSRKPQTTRHRFQGIKTKGQNQIIFVDTPGF 64 Query: 81 FNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILIL 137 + K + ++ M +++ + ++ DIV +VD+ L+ + DL LK I+ + +IL++ Sbjct: 65 HSGQKRALNRYMNKVASNAMRGVDIVLYMVDN---LRWSEEDLKRLKTISDETF-VILVI 120 Query: 138 NKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID ++ + LL E +K +SA KG+G +D++ + LP +Y D Sbjct: 121 NKIDKLENKNLLLPYIEERSKENLFSNIIPISALKGNGVEDLVKSISEKLPSRDHLYPED 180 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 Q++D+ +E+ REK L E+PY V E + K I I +IYVE+ SQK Sbjct: 181 QVTDISEKFLASEVIREKCITRLGDELPYRISVGIENFSIAKK-VIHIDSIIYVEKQSQK 239 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCP 306 +++G++G +K+I ++ E+ ++L+ V L ++VKV+ W + P Sbjct: 240 GMLIGQSGSRLKSIGTASRLELEDLLDSKVMLKIWVKVKNGWSDNESVLP 289 >gi|110802047|ref|YP_699296.1| GTP-binding protein Era [Clostridium perfringens SM101] gi|168204746|ref|ZP_02630751.1| GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|168208717|ref|ZP_02634342.1| GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|168212948|ref|ZP_02638573.1| GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|168215642|ref|ZP_02641267.1| GTP-binding protein Era [Clostridium perfringens NCTC 8239] gi|169343587|ref|ZP_02864586.1| GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|182624448|ref|ZP_02952232.1| GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|122956577|sp|Q0SRG1|ERA_CLOPS RecName: Full=GTPase Era gi|110682548|gb|ABG85918.1| GTP-binding protein Era [Clostridium perfringens SM101] gi|169298147|gb|EDS80237.1| GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|170663559|gb|EDT16242.1| GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|170713142|gb|EDT25324.1| GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|170715652|gb|EDT27834.1| GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|177910451|gb|EDT72828.1| GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|182382082|gb|EDT79561.1| GTP-binding protein Era [Clostridium perfringens NCTC 8239] Length = 296 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 155/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + +VG N GKSTL N +G K+SIV++K QTTR+ ++ I++ + Q++F+DTPGI Sbjct: 3 KSGFITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + +IK D+V + + E+ +++++ + + +I +LNK+ Sbjct: 63 HKPKHKLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIIEQLKNQKAPVIFVLNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D PE++ + E+ +K + +SA K D +L + LP P Y D I+D Sbjct: 123 DESSPEKVAKTLELFSKEYDFAEMIPISAMKAKNTDKLLELMVKYLPEGPKYYPDDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + AEI REK +L +E+P+ V + ++ +G I + E+ S K I++ Sbjct: 183 VQERFVVAEIVREKALKNLSQEVPHGIAVDVIQMKQDDNGKYNIEVDLICEKASHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNGQ +K I A+ E+ L V++ ++VKV+K+W Sbjct: 243 GKNGQTLKKIGSTARYELERFLRAKVNIKIWVKVRKEW 280 >gi|160915033|ref|ZP_02077246.1| hypothetical protein EUBDOL_01041 [Eubacterium dolichum DSM 3991] gi|158432832|gb|EDP11121.1| hypothetical protein EUBDOL_01041 [Eubacterium dolichum DSM 3991] Length = 298 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/279 (37%), Positives = 162/279 (58%), Gaps = 3/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A+VG NAGKSTL+N + KV+I T K QTTR+ + GI++ +++Q VF+DTPGI Sbjct: 4 RSGFIAIVGRPNAGKSTLLNAILKEKVAITTPKPQTTRNNISGILTTEDTQYVFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + + + +++ I AD+ VVD+ + +L+++ + LILNKI Sbjct: 64 HKPKHELGRTLNKNAYTAISEADVNFWVVDATQPYGSGDEFMLEKMKSAHIPVFLILNKI 123 Query: 141 DCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D ++ E+LL+ A ++ F E F +SA + +L S L P + D IS Sbjct: 124 DLLEKEKLLKVLARWQERMEFAE-IFPISALTNDNIEHLLEITRSYLSEGPKYFPDDMIS 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D + AEI REK+ ++E+P+S VV E EE D + ++ VI VER SQK I+ Sbjct: 183 DHGLSFQIAEIIREKVLYKTNEEVPHSVAVVVENMEE-TDKKVYLQAVIVVERTSQKAIL 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK I+ I L A+KE+ E L + + L L+V+V+K+W Sbjct: 242 IGKQAAMIRAIRLAAQKELKEKLHKKIELELYVRVEKNW 280 >gi|198283250|ref|YP_002219571.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666809|ref|YP_002425833.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247771|gb|ACH83364.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519022|gb|ACK79608.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 23270] Length = 304 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 154/288 (53%), Gaps = 9/288 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + RSG VAL+G N GKSTL+N VG K+SI + QTTR + GI++ + Q++FLDT Sbjct: 11 EGYRSGYVALLGRPNVGKSTLLNHLVGQKISITAPRPQTTRDQILGILTRPDGQLLFLDT 70 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD---LLKEIAKRSSRLI 134 PG+ + S ++ ++R + ++ AD+ LVV E + HD L+ + + L+ Sbjct: 71 PGVHSGYRSLNRHLLRATRGALESADLGVLVV----EALLWTHDDAEALRWLQRAGIPLV 126 Query: 135 LILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++NK+D V + RL + + +SA + + + + L LP AP + Sbjct: 127 AVVNKVDRVASKARLFPYLQALAERGEFAAIIPLSARRAPDVERLADVLVPLLPPAPAAF 186 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 DQ++D + AEI RE++F L E+PY + V E + + + G I IY RP Sbjct: 187 PEDQVTDRNLRFMAAEIIREQIFRQLGAELPYDTAVAIESY-QVEGGQQRIEATIYCRRP 245 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I+LG G ++ I A++ + ++ E+ V L L+VK ++ W D Sbjct: 246 GQKAIILGDGGNRLRVIGSRAREALQQLTEERVWLGLWVKQKEQWSED 293 >gi|256545610|ref|ZP_05472968.1| GTP-binding protein Era [Anaerococcus vaginalis ATCC 51170] gi|256398687|gb|EEU12306.1| GTP-binding protein Era [Anaerococcus vaginalis ATCC 51170] Length = 293 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 168/289 (58%), Gaps = 21/289 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+ + +G K+SI+++K QTTR ++ I +++ SQI+FLDTPGI Sbjct: 2 KSGFVSVVGRANVGKSTLMEKILGEKISIISNKPQTTRDEIKIIYNDENSQIIFLDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ + ++ +S ++K +DIV +VD+ + +L+ + K ++ IL++NK Sbjct: 62 QTPRNKLQEHLLEVSEDSLKDSDIVTFIVDNSLTIGRLDKMILEILEKVNAPKILLINKC 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFM----------VSATKGHGCDDVLNYLCSTLPLAP 190 D LLE+ EI I++T++ +SA + + LP P Sbjct: 122 D------LLEEGEIEQ----IKRTYIGLNTFDYIIPISALNDENIGKYIETVKEILPEGP 171 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIY 249 Y +D I+D +EI REK +L EIP+ V +++++++D ++ I + Sbjct: 172 LYYPSDMITDKNERFIVSEIIREKALKNLSNEIPHGIFVRIDQFKKREDKNLYDIYASLI 231 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +ERPS K+I++GKNG IK I +EA+ EI ++ ++L L+VKV+KDW Sbjct: 232 LERPSHKEIVIGKNGSKIKKIGMEARCEIEVFMDSKINLKLWVKVEKDW 280 >gi|217974268|ref|YP_002359019.1| GTP-binding protein Era [Shewanella baltica OS223] gi|304409363|ref|ZP_07390983.1| GTP-binding protein Era [Shewanella baltica OS183] gi|307303721|ref|ZP_07583474.1| GTP-binding protein Era [Shewanella baltica BA175] gi|217499403|gb|ACK47596.1| GTP-binding protein Era [Shewanella baltica OS223] gi|304351881|gb|EFM16279.1| GTP-binding protein Era [Shewanella baltica OS183] gi|306912619|gb|EFN43042.1| GTP-binding protein Era [Shewanella baltica BA175] Length = 338 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 163/289 (56%), Gaps = 9/289 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA++G N GKSTL+NR +G KVSI + K QTTR + GI ++ QIVF+DTPG+ Sbjct: 45 GMVAIIGRPNVGKSTLINRLLGQKVSITSKKPQTTRHRIMGIHTDGPKQIVFIDTPGLHI 104 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 + + ++LM R + S++ +V VVD + ++ + L + +R + IL +N Sbjct: 105 EEQRAINRLMNRAAASSLADVAMVIFVVDGMTWTADDEMVLSKLRRGGEERQT--ILAIN 162 Query: 139 KIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D +K + L E+A K F ++ +SA+KG +L +++P P+ + D Sbjct: 163 KVDNIKDKESLFPYLEEVAKKYPF-DEILPISASKGTNVQRILELAAASIPEGPFFFPED 221 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D +EI REKL L E+PY + V E+++ ++G I +I VER QK Sbjct: 222 YVTDRSQRFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQINALILVEREGQK 281 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++++G G+ I+TI+ +A+ ++ + + V L ++VKV+ W D + Sbjct: 282 RMVIGSKGERIRTIATQARLDMETLFDNKVFLEVWVKVKSGWADDERAL 330 >gi|193213385|ref|YP_001999338.1| GTP-binding protein Era [Chlorobaculum parvum NCIB 8327] gi|193086862|gb|ACF12138.1| GTP-binding protein Era [Chlorobaculum parvum NCIB 8327] Length = 305 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 106/286 (37%), Positives = 163/286 (56%), Gaps = 11/286 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VGA NAGKSTL+NR + K+SIVT K QTTR + GI + SQI+ LDTPGI + Sbjct: 9 GHATFVGAPNAGKSTLLNRLLDHKLSIVTPKPQTTRKKITGIYHDDRSQIIILDTPGIMD 68 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-----LILIL 137 K S H+ M+ ++ +++ D++ ++ + + E+ ++ R ++ L Sbjct: 69 PKQSLHESMLEITRRSLRDTDVIVALIPLQKGEEPFDRAFADELIEQWVRPADKPFVIAL 128 Query: 138 NKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D V E + + Q EI + I +SA G ++++ L LPL ++ D Sbjct: 129 NKADLVPEETVHQVQNEIMERYHPI-AVPALSALTGSNIQELIDLLRPLLPLDEPIWPDD 187 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LIRQVIYVER 252 +S P F EI REK+FL +EIPYS+ VV ++++E+ + LIR I VER Sbjct: 188 ILSTEPERFFVGEIIREKIFLQFGREIPYSTEVVIDEFKEQHENDPSKKDLIRCSIIVER 247 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK+I++G+ G IK + A+KEI E+L++PV L +FVK++ DW Sbjct: 248 NSQKQIIIGQKGAAIKKLGQAARKEIEELLDRPVFLEIFVKIRPDW 293 >gi|126173440|ref|YP_001049589.1| GTP-binding protein Era [Shewanella baltica OS155] gi|160874398|ref|YP_001553714.1| GTP-binding protein Era [Shewanella baltica OS195] gi|125996645|gb|ABN60720.1| GTP-binding protein Era [Shewanella baltica OS155] gi|160859920|gb|ABX48454.1| GTP-binding protein Era [Shewanella baltica OS195] gi|315266633|gb|ADT93486.1| GTP-binding protein Era [Shewanella baltica OS678] Length = 338 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 163/289 (56%), Gaps = 9/289 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA++G N GKSTL+NR +G KVSI + K QTTR + GI ++ QIVF+DTPG+ Sbjct: 45 GMVAIIGRPNVGKSTLINRLLGQKVSITSKKPQTTRHRIMGIHTDGPKQIVFIDTPGLHI 104 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 + + ++LM R + S++ +V VVD + ++ + L + +R + IL +N Sbjct: 105 EEQRAINRLMNRAAASSLADVAMVIFVVDGMTWTADDEMVLSKLRRGGEERQT--ILAIN 162 Query: 139 KIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D +K + L E+A K F ++ +SA+KG +L +++P P+ + D Sbjct: 163 KVDNIKDKESLFPYLEEVAKKYPF-DEILPISASKGTNVQRILELAAASIPEGPFFFPED 221 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D +EI REKL L E+PY + V E+++ ++G I +I VER QK Sbjct: 222 YVTDRSQRFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQINALILVEREGQK 281 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++++G G+ I+TI+ +A+ ++ + + V L ++VKV+ W D + Sbjct: 282 RMVIGSKGERIRTIATQARLDMETLFDNKVFLEVWVKVKSGWADDERAL 330 >gi|41408243|ref|NP_961079.1| GTP-binding protein Era [Mycobacterium avium subsp. paratuberculosis K-10] gi|81831734|sp|Q73Y13|ERA_MYCPA RecName: Full=GTPase Era gi|41396598|gb|AAS04462.1| Bex [Mycobacterium avium subsp. paratuberculosis K-10] Length = 299 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 155/288 (53%), Gaps = 5/288 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V LVG N GKSTL N VG KV+I + + QTTR +RGIV ++ QI+ +DTPG+ Sbjct: 5 RSGFVCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHREDFQIILVDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 + K + L T D++ L + + + ++++I + + L+ I+ Sbjct: 65 HRPRTLLGKRLNDLVRDTYAEVDVIGLCIPADEAIGPGDRWIVEQIRATAPKTTLVAIVT 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V +R+ Q ++LV + VSA G D V++ L + LP P Y + Sbjct: 125 KIDKVPKDRVAAQLVAVSELVGDSAEIVPVSAVTGAQVDIVIDVLAAALPPGPAYYPDGE 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQ 255 ++D P AE+ RE + E+P+S VV ++ E +D I + ++YVER SQ Sbjct: 185 LTDEPEEVLMAELIREAALEGVRDELPHSLAVVIDEVNPREDRDDLIDVHALLYVERDSQ 244 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++GK G ++ + A+ +I ++L V+L L VKV K+W DPK Sbjct: 245 KGIIIGKGGARLREVGTAARAQIEKLLGTKVYLDLRVKVAKNWQSDPK 292 >gi|152999779|ref|YP_001365460.1| GTP-binding protein Era [Shewanella baltica OS185] gi|151364397|gb|ABS07397.1| GTP-binding protein Era [Shewanella baltica OS185] Length = 338 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 163/289 (56%), Gaps = 9/289 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA++G N GKSTL+NR +G KVSI + K QTTR + GI ++ QIVF+DTPG+ Sbjct: 45 GMVAIIGRPNVGKSTLINRLLGQKVSITSKKPQTTRHRIMGIHTDGPKQIVFIDTPGLHI 104 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 + + ++LM R + S++ +V VVD + ++ + L + +R + IL +N Sbjct: 105 EEQRAINRLMNRAAASSLADVAMVIFVVDGMTWTADDEMVLSKLRRGGEERQT--ILAIN 162 Query: 139 KIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D +K + L E+A K F ++ +SA+KG +L +++P P+ + D Sbjct: 163 KVDNIKDKESLFPYLEEVAKKYPF-DEILPISASKGTNVQRILELAAASIPEGPFFFPED 221 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D +EI REKL L E+PY + V E+++ ++G I +I VER QK Sbjct: 222 YVTDRSQRFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQINALILVEREGQK 281 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++++G G+ I+TI+ +A+ ++ + + V L ++VKV+ W D + Sbjct: 282 RMVIGSKGERIRTIATQARLDMETLFDNKVFLEVWVKVKSGWADDERAL 330 >gi|187934969|ref|YP_001885107.1| GTP-binding protein Era [Clostridium botulinum B str. Eklund 17B] gi|226741198|sp|B2TMB9|ERA_CLOBB RecName: Full=GTPase Era gi|187723122|gb|ACD24343.1| GTP-binding protein Era [Clostridium botulinum B str. Eklund 17B] Length = 295 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 156/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N +G K+SIV++K QTTR+ ++ I++ ++ QIVF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGEDYQIVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + + D+V + + E+ +L+ + + + L+LNKI Sbjct: 63 HKPKHKLGEYMVNSAKDSTNDVDLVLFLTNPDEEIGKGDKFILESLKDKKCPVYLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D PER+ + E+ + ++ ++A KG D +++ + + LP P Y D I+D Sbjct: 123 DESTPERVAKSLEMYSSEFNFKEIVPIAAIKGKNVDTLVDLMKTELPEGPKYYPEDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +P +EI REK L E+P+ V + ++ +G+ I + E+ S K I++ Sbjct: 183 VPERFVVSEIVREKALRCLRDEVPHGIAVDIIQMKQSDNGTYHIEVDLICEKDSHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNGQ +K I ++ E+ L V++ ++VKV+K+W Sbjct: 243 GKNGQMLKKIGETSRYELERFLRTKVNVKIWVKVRKEW 280 >gi|120599801|ref|YP_964375.1| GTP-binding protein Era [Shewanella sp. W3-18-1] gi|120559894|gb|ABM25821.1| GTP-binding protein Era [Shewanella sp. W3-18-1] gi|319425562|gb|ADV53636.1| GTP-binding protein Era [Shewanella putrefaciens 200] Length = 338 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 163/289 (56%), Gaps = 9/289 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA++G N GKSTL+NR +G K+SI + K QTTR + GI ++ QIVF+DTPG+ Sbjct: 45 GMVAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPKQIVFIDTPGLHI 104 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 + + ++LM R + S++ +V VVD + ++ + L + +R + IL +N Sbjct: 105 EEQRAINRLMNRAAASSLADVAMVIFVVDGMTWTADDEMVLSKLRRGGEERKT--ILAIN 162 Query: 139 KIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D +K + L E+A K F ++ +SA+KG +L ++LP P+ + D Sbjct: 163 KVDNIKDKEALFPYLEEVAKKYPF-DEILPISASKGTNVQRILELAAASLPQNPFFFPED 221 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D +EI REKL L E+PY + V E+++ ++G I +I VER QK Sbjct: 222 YVTDRSQRFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQINALILVEREGQK 281 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++++G G+ I+TI+ +A+ ++ + + V L ++VKV+ W D + Sbjct: 282 RMVIGSKGERIRTIATQARLDMETLFDNKVFLEVWVKVKSGWADDERAL 330 >gi|18310997|ref|NP_562931.1| GTP-binding protein Era [Clostridium perfringens str. 13] gi|21263575|sp|Q8XIU8|ERA_CLOPE RecName: Full=GTPase Era gi|18145679|dbj|BAB81721.1| GTP-binding protein [Clostridium perfringens str. 13] Length = 296 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 155/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + +VG N GKSTL N +G K+SIV++K QTTR+ ++ I++ + Q++F+DTPGI Sbjct: 3 KSGFITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + +IK D+V + + E+ +++++ + + +I +LNK+ Sbjct: 63 HKPKHKLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIVEQLKNQKAPVIFVLNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D PE++ + E+ +K + +SA K D +L + LP P Y D I+D Sbjct: 123 DESSPEKVAKTLELFSKEYDFAEMIPISAMKAKNTDKLLELMVKYLPEGPKYYPDDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + AEI REK +L +E+P+ V + ++ +G I + E+ S K I++ Sbjct: 183 VQERFVVAEIVREKALKNLSQEVPHGIAVDVIQMKQDDNGKYNIEVDLICEKASHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNGQ +K I A+ E+ L V++ ++VKV+K+W Sbjct: 243 GKNGQTLKKIGSTARYELERFLRAKVNIKIWVKVRKEW 280 >gi|325068593|ref|ZP_08127266.1| GTP-binding protein Era [Actinomyces oris K20] Length = 427 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 160/302 (52%), Gaps = 12/302 (3%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +D R+G +VG NAGKSTL N VGAK++I + + QTTR VRG++ ++ +QIV Sbjct: 121 DFPED-FRAGFACIVGRPNAGKSTLTNAMVGAKIAITSGRPQTTRHNVRGVIHKENAQIV 179 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DTPG+ + K + L T+ D+V + ++ ++ + +++A+ + + Sbjct: 180 LVDTPGLHRPRTLLGKRLNDLVRETLVDVDVVVFCIPANEKIGPGDRFITRDLAELRTPV 239 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 + ++ K D V E L Q ++L VSA + D + L +PL+P +Y Sbjct: 240 VAVVTKADTVTREALAAQLLAVSELGEWADIVPVSAQRNEQIDVLEEVLLGYMPLSPPLY 299 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-----------GSI 242 +I+D P AE+ RE + E+P+S VV ++ + D G + Sbjct: 300 PTGEITDEPQQVMIAELVREAALEGVRDELPHSLAVVVDEIADPDDEHEVGHIKGAGGRL 359 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 +R + VER SQK I++GK G+ +K + + A+K I ++L + V+L L V+ KDW DP Sbjct: 360 QVRVSLVVERDSQKAIIIGKGGRRLKEVGVTARKGIEKLLGRKVYLDLHVRTAKDWQSDP 419 Query: 303 KC 304 K Sbjct: 420 KA 421 >gi|206895731|ref|YP_002246848.1| GTP-binding protein Era [Coprothermobacter proteolyticus DSM 5265] gi|206738348|gb|ACI17426.1| GTP-binding protein Era [Coprothermobacter proteolyticus DSM 5265] Length = 299 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 101/282 (35%), Positives = 153/282 (54%), Gaps = 5/282 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV-SEKESQIVFLDTP 78 S+SG V+LVG + GKSTL+N V KVSIVT + QTTR +R I+ +E SQIVF+D P Sbjct: 5 SKSGIVSLVGRPSVGKSTLINNLVKQKVSIVTPRAQTTRRPIRAILNTEDGSQIVFVDLP 64 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL--KEIAKRSSRLILI 136 G D+ + ++ W + +D+ VVD + D+ + + K +L+ Sbjct: 65 GAKKPYDALGEYLLDSVWRNVGDSDLALFVVDGS-SVPPGPGDIFVARNLMKTGVPALLV 123 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NK D + +++ E+ + L + +SA G D ++N + L P Y Sbjct: 124 MNKSDLICDDQVEERLRMFESLGDFVGSVAISALNGSNLDRLVNLVLDHLDEGPQFYPEG 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 +D P+ F EI REK+ L EIPY+ + +E++D I I IYVER SQK Sbjct: 184 MQTDQPLEQFIGEIIREKIMLLTSDEIPYAVESQVDFLDEQED-IIRINATIYVERESQK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++G NGQ IK I A+KE+ +L + V L L+VKV+++W Sbjct: 243 PIIIGANGQMIKQIGTLARKELEVVLGKHVFLGLWVKVKENW 284 >gi|319943506|ref|ZP_08017788.1| GTP-binding protein Era [Lautropia mirabilis ATCC 51599] gi|319743321|gb|EFV95726.1| GTP-binding protein Era [Lautropia mirabilis ATCC 51599] Length = 309 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 164/285 (57%), Gaps = 8/285 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VALVG N GKSTL+N+ +G +SI + QTTR ++G++S +Q++ +D+PG Sbjct: 19 RCGYVALVGRPNTGKSTLLNQLLGQMLSITADRAQTTRHRIQGVLSRPHAQLILVDSPGY 78 Query: 81 FNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + +K++ R + S + AD+V LV ++ R + + D + K + +I+ LNK Sbjct: 79 QTQRINPLNKILNRTAQSVGQQADVVVLVTEAGRWRRQD--DEILGWLKGDAPVIVALNK 136 Query: 140 IDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID ++ E L A++ + + A G G + +L+ + S LP +Y D+ Sbjct: 137 IDQLRNVNEVLPLIAQVHEAHPGLAAIVPICARNGQGIEALLDAIESNLPEGEAIYGEDE 196 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D P F AEI REKLF L +E+PY S VV +++EE +G++ I I VER + K Sbjct: 197 LTDRPERFFAAEIVREKLFRLLGEELPYESTVVIDRFEE--EGNLRRIAATIIVERRAHK 254 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I+LG G+ IK I+ EA++++ + + V L L+V+V+ W D Sbjct: 255 PIVLGHGGERIKRIASEARQDMERMFDGKVFLTLWVQVRSGWAKD 299 >gi|146292263|ref|YP_001182687.1| GTP-binding protein Era [Shewanella putrefaciens CN-32] gi|145563953|gb|ABP74888.1| GTP-binding protein Era [Shewanella putrefaciens CN-32] Length = 338 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 163/289 (56%), Gaps = 9/289 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA++G N GKSTL+NR +G K+SI + K QTTR + GI ++ QIVF+DTPG+ Sbjct: 45 GMVAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPKQIVFIDTPGLHI 104 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 + + ++LM R + S++ +V VVD + ++ + L + +R + IL +N Sbjct: 105 EEQRAINRLMNRAAASSLADVAMVIFVVDGMTWTADDEMVLSKLRRGGEERKT--ILAIN 162 Query: 139 KIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D +K + L E+A K F ++ +SA+KG +L ++LP P+ + D Sbjct: 163 KVDNIKDKEALFPYLEEVAKKYPF-DEILPISASKGTNVQRILELAAASLPQNPFFFPED 221 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D +EI REKL L E+PY + V E+++ ++G I +I VER QK Sbjct: 222 YVTDRSQRFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQINALILVEREGQK 281 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++++G G+ I+TI+ +A+ ++ + + V L ++VKV+ W D + Sbjct: 282 RMVIGSKGERIRTIATQARLDMETLFDNKVFLEVWVKVKSGWADDERAL 330 >gi|54023403|ref|YP_117645.1| GTP-binding protein Era [Nocardia farcinica IFM 10152] gi|54014911|dbj|BAD56281.1| putative GTP-binding protein [Nocardia farcinica IFM 10152] Length = 305 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 162/290 (55%), Gaps = 9/290 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VGAK++I + + QTTR +RGIV + +Q++ +DTPG+ Sbjct: 11 RSGFVCFVGRPNTGKSTLTNALVGAKIAITSSRPQTTRHTIRGIVHREHAQLILVDTPGL 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L T D++ + + + ++ I +K++A +++ L+ ++ Sbjct: 71 HRPRTLLGQRLNDLVRDTYSEVDVIAICIPADEKIGPGDRWIVQQVKQMAPKTT-LLGVV 129 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V +++ EQ ++L+ + + VSA +G + +++ + + +P P Y Sbjct: 130 TKIDKVGRQQVAEQLLAVSELLGPQAEVVPVSAVRGEQVEVLVDVIAAKMPEGPAFYPDG 189 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK---WEEKKDGSILIRQVIYVERP 253 +++D P AE+ RE + E+P+S VV E+ EE D + + ++YVERP Sbjct: 190 ELTDEPEETLMAELIREAALEGVRDELPHSLAVVIEEVLPREENPD-MLDVHALLYVERP 248 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++GK G +K + A+K+I IL ++L L VKV KDW DPK Sbjct: 249 SQKAIVIGKGGSRLKEVGTNARKQIEHILGVRIYLHLHVKVAKDWQRDPK 298 >gi|88797949|ref|ZP_01113536.1| GTP-binding protein Era [Reinekea sp. MED297] gi|88779146|gb|EAR10334.1| GTP-binding protein Era [Reinekea sp. MED297] Length = 302 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 168/295 (56%), Gaps = 6/295 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D Q ++ G VA+VG N GKSTL+N +G K+SI + K QTTR + GI +E ++Q+V Sbjct: 3 DQFQLDTSCGFVAIVGRPNVGKSTLMNHLLGQKISITSRKPQTTRHQILGIWTEDKTQMV 62 Query: 74 FLDTPGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-S 131 F+DTPG+ ++ + ++ M + + + + D V VVD R + + + E KRS + Sbjct: 63 FVDTPGMHRGQEKAINRAMNKAADTALTDIDAVIFVVD--RTVFTDEDAWVLEKLKRSRA 120 Query: 132 RLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +IL++NK+D + ++ LL E ++ ++ VSA +GH D + L +++P Sbjct: 121 PVILVINKVDQLDDKQSLLPHIEAMSEKFAFKEVIPVSALQGHNLDRLTESLSASMPAGL 180 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + + DQI+D AEI REK+ L E+PYS+ V E++ + +D + I +I V Sbjct: 181 FHFPEDQITDKTQRFMAAEIIREKIMRQLGAELPYSTAVEIEQF-KFEDRVLHIHGLILV 239 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QK+I++G G IK + EA++++ + E V L L+VKV+ W D + Sbjct: 240 ERSGQKRIVIGDKGARIKKVGQEARQDMENLFETKVMLNLWVKVKGGWADDERAL 294 >gi|88802178|ref|ZP_01117706.1| putative GTP-binding protein [Polaribacter irgensii 23-P] gi|88782836|gb|EAR14013.1| putative GTP-binding protein [Polaribacter irgensii 23-P] Length = 294 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 105/282 (37%), Positives = 154/282 (54%), Gaps = 4/282 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N VG K+SI+T K QTTR + GIV+E++ QIVF DTPGI Sbjct: 4 KAGFVNIIGNPNVGKSTLMNALVGEKLSIITAKAQTTRHRILGIVNEEDYQIVFSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 M+ S + ADI+ +V+ +ELK I +IL+LNK Sbjct: 64 IKPAYELQSSMMDFVKSAFEDADILIYMVEVGEKELKN--EAFFHRILHSEIPVILLLNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID E + E+ E V F++SA + V + + LP P Y DQ++ Sbjct: 122 IDKSSQEEVEEKIEYWRDKVPNADVFVISALEKFNVPAVFDKIKELLPEGPAFYPKDQLT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D F E REK+ +H KEIPYS V TE+ +++ + IR +I VER +QK I+ Sbjct: 182 DKSERFFVNEKIREKILIHYKKEIPYSVEVETEE-FTEEETIVRIRSIIMVERETQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G G +K + EA+K++ + E+ V + L+VKV K+W D Sbjct: 241 IGHKGAALKRVGAEARKDLEKFFEKKVFIELYVKVNKNWRSD 282 >gi|52424422|ref|YP_087559.1| GTP-binding protein Era [Mannheimia succiniciproducens MBEL55E] gi|52306474|gb|AAU36974.1| Era protein [Mannheimia succiniciproducens MBEL55E] Length = 317 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 161/288 (55%), Gaps = 9/288 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 25 GFVAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHI 84 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++LM R + S I D++ VVD + N D +L ++ + ++L +NK Sbjct: 85 EEKRAINRLMNRAASSAISDVDLIIFVVDG---IHWNADDEMVLNKLRASKAPVVLAINK 141 Query: 140 IDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID +K E L E++ K F E +SA +G+ ++ + +L + D Sbjct: 142 IDNIKNKDELLPFITELSGKFNFKE-IIPISAQRGNNVHNLQKVVRQSLRKGVHHFPEDY 200 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D +EI REKL + +E+PYS V E+++ + G+ I +I VER QKK Sbjct: 201 VTDRSQRFMASEIIREKLMRFMGEELPYSVTVEIEQFKMNERGTYEINGLILVEREGQKK 260 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++G+ GQ IKT+ +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 261 MVIGQGGQKIKTVGIEARADMERLFDNKVHLELWVKVKSGWADDERAL 308 >gi|254774754|ref|ZP_05216270.1| GTP-binding protein Era [Mycobacterium avium subsp. avium ATCC 25291] Length = 299 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 155/288 (53%), Gaps = 5/288 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V LVG N GKSTL N VG KV+I + + QTTR +RGIV ++ QI+ +DTPG+ Sbjct: 5 RSGFVCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHREDFQIILVDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 + K + L T D++ L + + + ++++I + + L+ I+ Sbjct: 65 HRPRTLLGKRLNDLVRDTYAEVDVIGLCIPADEAIGPGDRWIVEQIRATAPKTTLVAIVT 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V +R+ Q ++LV + VSA G D V++ L + LP P Y + Sbjct: 125 KIDKVPKDRVAAQLVAVSELVGDGAEIVPVSAVTGAQVDIVIDVLAAALPPGPAYYPDGE 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQ 255 ++D P AE+ RE + E+P+S VV ++ E +D I + ++YVER SQ Sbjct: 185 LTDEPEEVLMAELIREAALEGVRDELPHSLAVVIDEVNPREDRDDLIDVHALLYVERDSQ 244 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++GK G ++ + A+ +I ++L V+L L VKV K+W DPK Sbjct: 245 KGIIIGKGGARLREVGTAARAQIEKLLGTKVYLDLRVKVAKNWQSDPK 292 >gi|260495459|ref|ZP_05815585.1| GTP-binding protein Era [Fusobacterium sp. 3_1_33] gi|260196996|gb|EEW94517.1| GTP-binding protein Era [Fusobacterium sp. 3_1_33] Length = 298 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/285 (35%), Positives = 162/285 (56%), Gaps = 11/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + M ++ S +K DI+ ++D+ + + + D + E AK+ + IL++ Sbjct: 62 HKPQHLLGEYMTNIAVSILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPK-ILLV 120 Query: 138 NKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D + ++ + EI KL +K S G +L L L Y D Sbjct: 121 NKVDLISDEQKKEKLKEIEEKLGKFDKIIFASGMYSFGISQLLESLDPYLEEGVKYYPDD 180 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVV---TEKWEEKKDGSILIRQVIYVERP 253 +D+ + EI REK+ L EIP+S V E+ E KKD + IYVER Sbjct: 181 MYTDMSTYRIITEIVREKILLKTRDEIPHSVAVEIINVERKEGKKDKFDI---NIYVERD 237 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GK+G+ +K I +EA+KEI E+L + ++L L+VKV+ DW Sbjct: 238 SQKGIIIGKDGKMLKEIGVEARKEIEELLGEKIYLGLWVKVKDDW 282 >gi|188590271|ref|YP_001920268.1| GTP-binding protein Era [Clostridium botulinum E3 str. Alaska E43] gi|251778596|ref|ZP_04821516.1| GTP-binding protein Era [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226741197|sp|B2V2K0|ERA_CLOBA RecName: Full=GTPase Era gi|188500552|gb|ACD53688.1| GTP-binding protein Era [Clostridium botulinum E3 str. Alaska E43] gi|243082911|gb|EES48801.1| GTP-binding protein Era [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 295 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 155/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N +G K+SIV++K QTTR+ ++ I++ + QIVF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDYQIVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + + D+V + + E+ +L+ + + + L+LNKI Sbjct: 63 HKPKHKLGEYMVNSAKDSTNDVDLVLFLTNPDEEIGKGDKFILESLKDKKCPVYLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D PER+ + E+ + ++ ++A KG D +++ + + LP P Y D I+D Sbjct: 123 DESTPERVAKSLEMYSSEFNFKEIVPIAAIKGKNVDTLVDLMKTELPEGPKYYPEDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +P +EI REK L E+P+ V + ++ +G+ I + E+ S K I++ Sbjct: 183 VPERFVVSEIVREKALRCLRDEVPHGIAVDIIQMKQSDNGTYHIEVDLICEKDSHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNGQ +K I ++ E+ L V++ ++VKV+K+W Sbjct: 243 GKNGQMLKKIGETSRYELERFLRTKVNVKIWVKVRKEW 280 >gi|227485436|ref|ZP_03915752.1| GTP-binding protein Era [Anaerococcus lactolyticus ATCC 51172] gi|227236566|gb|EEI86581.1| GTP-binding protein Era [Anaerococcus lactolyticus ATCC 51172] Length = 295 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 164/288 (56%), Gaps = 1/288 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +++VG N GKSTL+ + + K+SI+++K QTTR + I ++++SQ++F+DTPGI Sbjct: 2 KSGFISVVGRANVGKSTLMEKILKEKISIISNKPQTTRDKINIIYNDEDSQLIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ + ++ S ++ +D+V VVD +E+ ++ E+ K +IL++NKI Sbjct: 62 QKPRNVLQERLLSFSKDSLNESDVVTYVVDESKEIGKLDQMIIDELRKVRVPIILLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E + E + ++ +K +SA ++ + S L P Y D I+D Sbjct: 122 DLLNEEEIEEIKNLYEEVGLFDKIIAISALDDTNVHTYIDGVKSYLDDGPAYYDRDMITD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 +EI REK L +E+P+ V + ++++ D ++ IR I VE+ S K+I+ Sbjct: 182 KTERFVVSEIIREKALRLLSEEVPHGLAVRIDDFKQRDDKPLIDIRATIIVEKNSHKQIV 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GKNG+ IK I ++A+ EI L+ V+L L+VKV+KDW K + Sbjct: 242 IGKNGKMIKQIGIDARSEIETFLDSKVNLQLWVKVEKDWRKKEKLVDR 289 >gi|118467125|ref|YP_881248.1| GTP-binding protein Era [Mycobacterium avium 104] gi|189037653|sp|A0QEB0|ERA_MYCA1 RecName: Full=GTPase Era gi|118168412|gb|ABK69309.1| GTP-binding protein Era [Mycobacterium avium 104] Length = 299 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 154/288 (53%), Gaps = 5/288 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V LVG N GKSTL N VG KV+I + + QTTR +RGIV + QI+ +DTPG+ Sbjct: 5 RSGFVCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHRDDFQIILVDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 + K + L T D++ L + + + ++++I + + L+ I+ Sbjct: 65 HRPRTLLGKRLNDLVRDTYAEVDVIGLCIPADEAIGPGDRWIVEQIRATAPKTTLVAIVT 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V +R+ Q ++LV + VSA G D V++ L + LP P Y + Sbjct: 125 KIDKVPKDRVAAQLVAVSELVGDSAEIVPVSAVTGAQVDIVIDVLAAALPPGPAYYPDGE 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQ 255 ++D P AE+ RE + E+P+S VV ++ E +D I + ++YVER SQ Sbjct: 185 LTDEPEEVLMAELIREAALEGVRDELPHSLAVVIDEVNPREDRDDLIDVHALLYVERDSQ 244 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++GK G ++ + A+ +I ++L V+L L VKV K+W DPK Sbjct: 245 KGIIIGKGGARLREVGTAARAQIEKLLGTKVYLDLRVKVAKNWQSDPK 292 >gi|195978544|ref|YP_002123788.1| GTP-binding protein Era [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226741237|sp|B4U458|ERA_STREM RecName: Full=GTPase Era gi|195975249|gb|ACG62775.1| GTP-binding protein Era-like [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 298 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ + ++ L L + DQI+D Sbjct: 123 DKVHPDQLLEQIDDFRSQMDFKEIVPISALQGNNVETLVQLLKDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV + K +E D + IR I VER SQK I Sbjct: 183 HPERFLVSEMVREKVLHLTQQEVPHSVAVVVDSMKRDEVTD-KVHIRVTIMVERDSQKGI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 242 IIGKQGAMLKKIGKLARRDIELMLGDKVYLETWVKVKKNW 281 >gi|310821558|ref|YP_003953916.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1] gi|309394630|gb|ADO72089.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1] Length = 324 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 18/310 (5%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 K RSG AL+G N GKSTL+N+ G K++IV+ K QTTR+ + G+V+ E Q+ Sbjct: 10 KTMASKTYRSGFAALIGRPNVGKSTLLNQLTGEKIAIVSPKPQTTRNRILGVVTRPEGQV 69 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD----LLKEIAK 128 F+DTPGI AK ++ M+ ++ + D+V VVD K+ + +L+ + K Sbjct: 70 AFIDTPGIHQAKGELNRYMVEVALQAAEEVDLVLFVVDVPGGEKLEVGPGNRMILERLQK 129 Query: 129 RSSRLILILNKIDCVKPERLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 L++NKID + +L ++ N+ F E +SA +G G D + LP Sbjct: 130 LGKPTFLVINKIDTLPKALILPLIDLYRNEFPFAE-VVPISAREGDGVDRLFQVALQHLP 188 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-------- 239 ++ D ++D +E RE++ H +EIPYS+ V+ E ++E + Sbjct: 189 EGERIFDEDMLTDQQERTLVSEYIREQVLRHCRQEIPYSTAVLVEVFDESEREPRPDAPP 248 Query: 240 ----GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 G I I IYVER SQK I++GK GQ +KTI +A+K I +L V+L L V+V+ Sbjct: 249 GPLAGLIRIAASIYVERDSQKAIIIGKQGQMLKTIGTDARKAIQRLLGAHVYLSLRVRVE 308 Query: 296 KDWGHDPKCC 305 W P+ Sbjct: 309 PRWSDRPEGL 318 >gi|291571472|dbj|BAI93744.1| GTP-binding protein Era homolog [Arthrospira platensis NIES-39] Length = 310 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 161/288 (55%), Gaps = 14/288 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + +SG V ++G N GKSTL+N+ VG K++I + QTTR+ +RGI++ +QI+F+DT Sbjct: 14 EGYKSGFVGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVDT 73 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI K++++ + I D++ VVDS ++ + +IL L Sbjct: 74 PGIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGL 133 Query: 138 NKIDCVKPERL------LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 NK D ++P++ +Q AN+ ++ SA G G + + N L ++L P+ Sbjct: 134 NKWD-LQPDQYEAIDQSYQQFAEANQWQMVK----FSAVTGAGVETLQNLLINSLDPGPY 188 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYV 250 Y D ++D P E+ RE++ LH +E+P+S + +K EE D I I I+V Sbjct: 189 YYPPDLVTDQPERFIMGELIREQILLHTREEVPHSVAIAIDKVEE--DVKITRILATIHV 246 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ER SQK I++GK GQ +KTI A+++I ++++ V+L LFV+VQ W Sbjct: 247 ERLSQKGILIGKGGQMLKTIGSAARQQIQKLVDGKVYLELFVRVQPKW 294 >gi|312140286|ref|YP_004007622.1| gtpase [Rhodococcus equi 103S] gi|325677056|ref|ZP_08156726.1| GTP-binding protein Era [Rhodococcus equi ATCC 33707] gi|311889625|emb|CBH48942.1| putative GTPase [Rhodococcus equi 103S] gi|325552127|gb|EGD21819.1| GTP-binding protein Era [Rhodococcus equi ATCC 33707] Length = 305 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 10/296 (3%) Query: 18 DNS-RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 DN RSG V VG N GKSTL N VG K++I + + QTTR +RGIV +Q++ +D Sbjct: 3 DNEFRSGFVCFVGRPNTGKSTLTNALVGEKIAITSSRPQTTRHTIRGIVHRDFAQLILVD 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRLI 134 TPG+ + + + L T D++CL + + ++ +L+++ + + ++L+ Sbjct: 63 TPGLHRPRTLLGQRLNDLVRDTYSEVDVICLCIPADEKIGPGDRWILEQVRQMAPKTKLV 122 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVY 193 I+ KID V + + Q +KL+ E + VSA G + ++ L + P Y Sbjct: 123 GIVTKIDKVSKDGVAAQLMALSKLLGPEAEVIPVSAVSGEQVELLVKVLAGLMEPGPAFY 182 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-----KDGSIL-IRQV 247 +++D P AE+ RE L E+P+S VV E+ E+ K G +L + + Sbjct: 183 PDGELTDEPEETLMAELIREAALEGLGDELPHSLAVVIEEVREREGRTEKQGELLDVHAL 242 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +YVERPSQK I++GK G ++ + A+K+I ++L + L L VKV KDW DPK Sbjct: 243 LYVERPSQKGIVIGKGGARLREVGTAARKQIEKLLGVKIFLELHVKVAKDWQRDPK 298 >gi|315127396|ref|YP_004069399.1| GTP-binding protein Era [Pseudoalteromonas sp. SM9913] gi|315015910|gb|ADT69248.1| GTP-binding protein Era [Pseudoalteromonas sp. SM9913] Length = 310 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 164/288 (56%), Gaps = 9/288 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N + KVSI + K QTTR + GI +E + Q V++DTPG+ Sbjct: 19 GMVAIVGRPNVGKSTLLNEIIEQKVSITSRKPQTTRHRIMGIHTEGKHQAVYVDTPGLHV 78 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++LM R + S+I +++ VV+ N D +L ++++ ++L++NK Sbjct: 79 EEKRAINRLMNRAASSSIGDVELIIFVVEG---THWNADDDMVLNKVSQSGKPVLLVINK 135 Query: 140 IDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID VK L+ + +K F+ VSAT+G + + + LP + + D Sbjct: 136 IDQVKDRDLVLPHMKFLGDKFDFV-GIMPVSATQGKNINLIKEEVTKRLPPCEFYFPDDY 194 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D M AE+ REKL + +E+PYS V E+++ +++G I +I VER +QK+ Sbjct: 195 VTDRSMRFMAAEVIREKLMRFMGEELPYSVTVEIEQFKWQENGIWHINGLILVERETQKR 254 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++G G+ +K I EA+K++ E+LE V L L+VKV+ W D + Sbjct: 255 MVIGNKGEKLKVIGREARKDLEEMLENKVFLELWVKVKSGWADDERAL 302 >gi|329946930|ref|ZP_08294342.1| ribosome biogenesis GTPase Era [Actinomyces sp. oral taxon 170 str. F0386] gi|328526741|gb|EGF53754.1| ribosome biogenesis GTPase Era [Actinomyces sp. oral taxon 170 str. F0386] Length = 424 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 157/295 (53%), Gaps = 11/295 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G +VG NAGKSTL N VGAK++I + + QTTR VRG++ ++++QIV +DTPG+ Sbjct: 124 RAGFACIVGRPNAGKSTLTNALVGAKIAITSGRPQTTRHNVRGVIHKEKAQIVLVDTPGL 183 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + L T+ D+V + ++ ++ + +++A+ + ++ ++ K Sbjct: 184 HRPRTLLGKRLNDLVRETLTDVDVVVFCIPANEKIGPGDRFITRDLAELRTPVVAVVTKA 243 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E L Q ++L VSA + D + L +PL+P +Y +I+D Sbjct: 244 DTVTREALAAQLLAVDQLGEWADIVPVSAQRNEQIDVLEEVLLKHMPLSPPLYPTGEITD 303 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-----------GSILIRQVIY 249 P AE+ RE + E+P+S VV ++ + D G + +R + Sbjct: 304 EPQQVMIAELVREAALEGVRDELPHSLAVVVDEIADPDDEREVGRIKGVGGRLQVRVSLV 363 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 VER SQK I++GK G+ +K + + A+K I ++L + V+L L V+ KDW DPK Sbjct: 364 VERDSQKAIVIGKGGRRLKEVGVTARKGIEKLLGRKVYLDLHVRTAKDWQSDPKA 418 >gi|111221450|ref|YP_712244.1| GTP-binding protein Era [Frankia alni ACN14a] gi|111148982|emb|CAJ60662.1| putative GTP-binding protein [Frankia alni ACN14a] Length = 314 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 154/296 (52%), Gaps = 18/296 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG LVG NAGKSTL N VG KV+I + + QTTR +RGIV ++Q+V +DTPG+ Sbjct: 17 RSGFACLVGRPNAGKSTLTNALVGTKVAITSGRPQTTRHAIRGIVHRTDAQLVLVDTPGL 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + +T+ D+V + + + I + L + KR+ ++ IL Sbjct: 77 HRPRTLLGQRLNDVVRATLSEVDVVGFCMPADEPVGRGDRFIAEELSRLPKRTP-VVAIL 135 Query: 138 NKIDCVK-----PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D V RLL+ A + + VSA + + D + + L + LP P + Sbjct: 136 TKTDKVGDADRIGARLLDVAGLGD----FSDIVPVSAIRSYQVDVLADVLAARLPTGPAL 191 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQV 247 Y +++D P AE+ RE + E+P+S VV E+ ++ S + +R Sbjct: 192 YPGGELTDEPEQVMVAELVREAALEGVRDELPHSLAVVVEEMIPREGRSPQNPLLDVRVN 251 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ++VERPSQK I++G G +KT+ A+ +I +L PV L L VKV KDW DP+ Sbjct: 252 VFVERPSQKAIVIGSGGSRLKTVGTRARGQIEALLGTPVFLDLHVKVAKDWQRDPR 307 >gi|182438802|ref|YP_001826521.1| GTP-binding protein Era [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467318|dbj|BAG21838.1| putative Era/ThdF-family GTP-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 324 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 161/297 (54%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 24 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRDDAQLILVDTPGL 83 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L ++KE+A + + I I Sbjct: 84 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDKYIVKELAGIKKTPKIAI 140 Query: 137 LNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V+ + L EQ + +A +L F + VSA D + + + LP++P Sbjct: 141 ITKTDLVESKALAEQLLAVSALAEELGFEWAEIVPVSAVGDKQVDLLADLIAPLLPVSPP 200 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSIL-IRQ 246 +Y ++D P AE+ RE + E+P+S VV E + + D +L I Sbjct: 201 LYPEGDLTDEPEMVMVAELIREAALEGVRDELPHSIAVVVEEMLPRTDRPADKPLLDIHA 260 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G GQ +K + +++K I +L PV L L VKV KDW DPK Sbjct: 261 NVYIERPSQKGIIIGPKGQRLKDVGTKSRKHIEALLGTPVFLDLHVKVAKDWQRDPK 317 >gi|313897353|ref|ZP_07830896.1| ribosome biogenesis GTPase Era [Clostridium sp. HGF2] gi|312957723|gb|EFR39348.1| ribosome biogenesis GTPase Era [Clostridium sp. HGF2] Length = 299 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 101/279 (36%), Positives = 160/279 (57%), Gaps = 3/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G NAGKSTL+N + KV+I T K QTTR+ + GI++ +++Q VF+DTPGI Sbjct: 4 KSGFISIIGRPNAGKSTLLNAILQEKVAITTPKPQTTRNNISGILTREDAQFVFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + + R +++ I AD+ +VD+ + +L+++ + LILNKI Sbjct: 64 HKPKHELGRTLNRNAYTAIAEADVNYWMVDATQPFGSGDEFILEKMKSAQIPVFLILNKI 123 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + E +L ++ +++ F E F VSA K + +L S L + D IS Sbjct: 124 DLLDKEAVLTTLSKWQSRMQFAE-IFPVSALKRENVEHLLEVTKSYLQEGVKYFPDDMIS 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AEI REK+ ++E+P+S V+ EK EE D + + +I VER SQK I+ Sbjct: 183 DHGENFQIAEIIREKVLYKTNEEVPHSVAVIVEKKEE-SDTRMELSALIVVERSSQKSIL 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G I+ I L A+KE+ E + V L L+V+V+K+W Sbjct: 242 IGKQGAMIRGIRLAAQKELKEKFGKKVELELYVRVEKNW 280 >gi|227112906|ref|ZP_03826562.1| GTP-binding protein Era [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 301 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 159/287 (55%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++LM R + S+I +++ VV+ N D +L ++ + ++L +NK Sbjct: 69 EEKRAINRLMNRAASSSIGDVELIIFVVEG---THWNDDDDMVLNKLRDQKLPVLLAINK 125 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D V + +LL + ++ + +SA KG D + N + LP A + D I Sbjct: 126 VDNVTDKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIANIVRKHLPQATHHFPEDYI 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKL L +E+PYS V E++ + G I +I VER QKK+ Sbjct: 186 TDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVTNERGGYDINGLILVEREGQKKM 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++G G IKTI +E+++++ E+ E VHL L+VKV+ W D + Sbjct: 246 VIGNKGAKIKTIGIESRQDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|327399772|ref|YP_004340641.1| GTP-binding protein Era-like-protein [Hippea maritima DSM 10411] gi|327182401|gb|AEA34582.1| GTP-binding protein Era-like-protein [Hippea maritima DSM 10411] Length = 297 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 165/283 (58%), Gaps = 8/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+N +G K++IV+ K Q TR VRGI++ K+ QI+F+DTPG+ Sbjct: 3 KSGFVAMIGKPNVGKSTLLNLLIGEKIAIVSPKPQATRKSVRGILNGKDYQIIFIDTPGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ +++M + ++ D+ ++ D+H E+ + + L +I ++S + ILI+NK Sbjct: 63 HESEKKLNQVMKKYIDEALEDFDLAVVITDNHGEIDEVLAEYLSKIKEKSKKAILIVNKT 122 Query: 141 DCVKPERLLE-QAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D + E++ + ++E +K F IE + + S + +L + LP P Y D Sbjct: 123 DLMNKEQIEQIKSEFTSKANFEKIIETSLIGSP---DAKEKILEAILELLPEGPKYYEDD 179 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQ 255 IS AEI REK+ ++ KEIPY V E+ + +++ + I+ I VER + Sbjct: 180 IISTETERFIIAEIIREKVMNNVSKEIPYHIAVTVEEMKYRQEKELYYIKANIIVERRAH 239 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G+ G+ IK I +A++EI L V+L L+VK+++ W Sbjct: 240 KMIIIGEGGKKIKEIGKQARQEIEAFLRTKVYLELWVKIKEHW 282 >gi|300717986|ref|YP_003742789.1| GTP-binding protein [Erwinia billingiae Eb661] gi|299063822|emb|CAX60942.1| GTP-binding protein [Erwinia billingiae Eb661] Length = 301 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 13/296 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EETTHCGFIAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRS 130 TPG+ K + ++LM R + S+I ++V VV+ R E+ VN ++ Sbjct: 63 TPGLHMEEKRAINRLMNRAASSSIGDVELVIFVVEGTRWTADDEMVVN------KLRDNR 116 Query: 131 SRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ++L +NK+D + + LL + ++ + +SA G D + + + LP A Sbjct: 117 VPVLLAINKVDNITDKSILLPHMQFLSQQMDFMDVVPISAESGKNVDTIASIVRKRLPEA 176 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 + D ++D +EI REKL L E+PYS V E++ G I +I Sbjct: 177 VHHFPEDYVTDRSQRFMASEIIREKLMRFLGAELPYSVTVEIEQFVTNARGGYDINGLIL 236 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA+K++ E+ EQ VHL L+VKV+ W D + Sbjct: 237 VEREGQKKMVIGNKGTKIKTIGIEARKDMEEMFEQKVHLELWVKVKSGWADDERAL 292 >gi|111018248|ref|YP_701220.1| GTP-binding protein Era [Rhodococcus jostii RHA1] gi|110817778|gb|ABG93062.1| GTP-binding protein [Rhodococcus jostii RHA1] Length = 305 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 11/293 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG+K++I + + QTTR +RGIV +Q++ +DTPG+ Sbjct: 7 RSGFVCFVGRPNTGKSTLTNALVGSKIAITSSRPQTTRHTIRGIVHRDHAQLILVDTPGL 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L T D++CL + + ++ I +++IA +++ LI I+ Sbjct: 67 HRPRTLLGQRLNDLVRDTYSEVDVICLCIPADEKIGPGDRWIVQQVRQIAPKTT-LIGIV 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V + + +Q +KL+ E + VSA G + +++ L S + P Y Sbjct: 126 TKIDKVSKDMVGQQLLAVSKLLGPEADVVPVSAASGEQVEVLVDVLASKMEEGPAFYPDG 185 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE-----KWEEKKDGSIL-IRQVIYV 250 +++D P AE+ RE L E+P+S VV E + +K G +L + ++YV Sbjct: 186 ELTDEPEETLMAELIREAALEGLGDELPHSLAVVIEEIIPREGRTEKQGELLDVHALLYV 245 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ERPSQK I++GK G ++ + +A+ +I ++L + L L VKV KDW DPK Sbjct: 246 ERPSQKGIVIGKGGARLREVGTKARLQIEKLLGTKIFLELHVKVAKDWQRDPK 298 >gi|82702877|ref|YP_412443.1| GTP-binding protein Era [Nitrosospira multiformis ATCC 25196] gi|82410942|gb|ABB75051.1| GTP-binding protein Era [Nitrosospira multiformis ATCC 25196] Length = 302 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 170/294 (57%), Gaps = 19/294 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A+VG N GKSTL+NR VG K+SI + K QTTR + GI +++ SQ VF+DTPG Sbjct: 13 RSGYIAIVGRPNVGKSTLLNRLVGQKISITSKKSQTTRHRIHGIFTDEYSQFVFVDTPG- 71 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILIL 137 F + + + M RL T++ DIV LV+++ R + D L+ ++ +S ++L L Sbjct: 72 FQTRHTNRLNSGMNRLVTQTLRDVDIVILVIEAMR---FDDRDKLVVKLLPKSKPVVLAL 128 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPW 191 NKID RL +++++ L + K F +SA G +++ + LP P Sbjct: 129 NKID-----RLTDKSQLLPFLEKMSKEFDFAAMVPISAENGGQLPELIAAIRPHLPQNPP 183 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 ++ D+++D AE+ REKLF L +EIPYS+ V+ +++ +D I I V+ Sbjct: 184 LFLEDEVTDRDERFIAAELVREKLFRLLGEEIPYSTSVIIDQF-TVEDELRRIHASIVVD 242 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 + SQK I++GK+G+ +K I+ +A+K++ E V+L ++VK++ W D + Sbjct: 243 KSSQKAIVIGKDGEKLKLIATQARKDMEESFGGKVYLKIWVKIKSGWAEDARML 296 >gi|292669776|ref|ZP_06603202.1| GTP-binding protein Era [Selenomonas noxia ATCC 43541] gi|292648573|gb|EFF66545.1| GTP-binding protein Era [Selenomonas noxia ATCC 43541] Length = 297 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 155/279 (55%), Gaps = 2/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G N GKSTL+N +G K++I++ K QTTRS + I++E+++QI+FLDTPG+ Sbjct: 5 KSGFAAVIGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTEEDAQIIFLDTPGV 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M + + + D++ VVD ++ +LK++A ++L +NK+ Sbjct: 65 HKPKHKLGSYMAKAAEGALHGVDVIVFVVDVTEKMGPGERYILKQLASVRVPVLLAVNKV 124 Query: 141 DCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 DC+ + E L A A F +SA +G D +L + LP P Y D ++ Sbjct: 125 DCIPRAESLPVIANYAKAYEF-AGIVPISAREGENLDGLLAEIKKYLPEGPQYYPEDMVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P AE+ REK+ EIP++ V E+ ++ G + IR VIYVER SQK I+ Sbjct: 184 DQPERLIIAELVREKVLELTRDEIPHAVAVDIEEMTTREKGDVYIRAVIYVERESQKGIV 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +G G ++TI A+ + +L V+L L+VK ++DW Sbjct: 244 IGAKGALLRTIGERARADAETLLGAKVYLDLWVKTRRDW 282 >gi|325963341|ref|YP_004241247.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3] gi|323469428|gb|ADX73113.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3] Length = 319 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 158/296 (53%), Gaps = 13/296 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G LVG NAGKSTL N VG KV+I + K QTTR +RGIV +++Q++ +DTPG+ Sbjct: 17 RAGFSVLVGRPNAGKSTLTNALVGKKVAITSAKPQTTRHTIRGIVHRQDAQLILVDTPGL 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + K + L T+ D + + ++ ++ + ++A + +I I+ K Sbjct: 77 HRPRTLLGKRLNELVADTLAEVDAIGFCLPANEKIGPGDKFIAAQLAAVGRKPVIAIVTK 136 Query: 140 IDCVKPERLLEQ----AEIANKLVFIE---KTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 D V + L EQ A + +++ E VSA G D V + L S +P +P + Sbjct: 137 ADLVDRQALTEQLLAVAALGREVLGEEGWKDIVPVSAADGFQVDTVADVLISHMPPSPPL 196 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK---WEEKKDGSIL--IRQV 247 Y +++D P AE+ RE + E+P+S VV E+ E++ + S L +R Sbjct: 197 YPDGELTDEPEAVMVAELIREAALEGVRDELPHSLAVVVEEIVPREDRPEDSPLLDVRVN 256 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +YVERPSQK I++GK G ++ + A+K I +L ++L L VKV KDW DPK Sbjct: 257 LYVERPSQKAIIIGKGGSRLREVGTNARKGIEALLGTRIYLDLHVKVAKDWQRDPK 312 >gi|304438431|ref|ZP_07398371.1| GTP-binding protein Era [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368514|gb|EFM22199.1| GTP-binding protein Era [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 298 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 155/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTRS + I++EK++QI+FLDTPGI Sbjct: 5 KSGFVAVVGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTEKDAQIIFLDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D+ M + + ++ D+V VVD ++ +L ++A+ + ++L +NKI Sbjct: 65 HKPQDALGSYMAKATEGALRGVDVVVFVVDVTEKMGAGERYILVQLAQVHAPVLLAVNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + E L K +SA + +++ + LP P Y D ++D Sbjct: 125 DRIPREESLPVIASYAKAYDFAAIVPISAREEENLTGLVDEIKEKLPEGPQYYPEDMVTD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ E+P++ V E+ + G + IR VIYVER SQK I++ Sbjct: 185 QPERLIIAELVREKVLELTRDEVPHAVAVDIEEMTTRPKGDVYIRAVIYVERRSQKGIII 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G ++TI A+ ++ +L +L L+VKV+KDW Sbjct: 245 GTRGALLRTIGQRARADVETLLGAKAYLDLWVKVRKDW 282 >gi|158313950|ref|YP_001506458.1| GTP-binding protein Era [Frankia sp. EAN1pec] gi|158109355|gb|ABW11552.1| GTP-binding protein Era [Frankia sp. EAN1pec] Length = 310 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 157/308 (50%), Gaps = 15/308 (4%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 +I + DF RSG LVG NAGKSTL N VG KV+I + + QTTR +RGI Sbjct: 2 DIELADPATDF-----RSGFACLVGRPNAGKSTLTNALVGTKVAITSGRPQTTRHAIRGI 56 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHD 121 ++ ++Q++ +DTPG+ + + + + +T+ D++ + + L I D Sbjct: 57 INRPDAQLILVDTPGLHRPRTLLGQRLNDVVRTTLSEVDVIGFCMPADEPLGRGDRFIAD 116 Query: 122 LLKEIAKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 L +A R+ ++ IL K+D V P+R+ + + L VSA + + Sbjct: 117 ELGRMAGRTP-VVAILTKVDAVGDPDRVGARLLEVSGLGDFADIVPVSAVSSFQVGTLAD 175 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEE 236 L S LP P +Y +++D P AE+ RE + E+P+S VV E + Sbjct: 176 VLVSRLPEGPRLYPDGELTDEPEQVMVAELIREAALEGVRDELPHSLAVVVEEMIPRENR 235 Query: 237 KKDGSILIRQV-IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 +D +L V +YVERPSQK I++G G ++ + A+ +I +L P++L L VKV Sbjct: 236 PEDRPLLDVHVNVYVERPSQKAIVIGAGGSRLRDVGTRARTQIEALLGTPIYLDLHVKVA 295 Query: 296 KDWGHDPK 303 KDW DPK Sbjct: 296 KDWQRDPK 303 >gi|257061326|ref|YP_003139214.1| GTP-binding protein Era [Cyanothece sp. PCC 8802] gi|256591492|gb|ACV02379.1| GTP-binding protein Era [Cyanothece sp. PCC 8802] Length = 314 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 157/284 (55%), Gaps = 12/284 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N+ VG K++I + QTTR+ +RGI++ +E+QI+F+DTPGI Sbjct: 21 KSGFVGIIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVDTPGI 80 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K++++ + + I DI+ +VVDS E +++ + + +IL LNK Sbjct: 81 HKPHHQLGKILVQNAEAAINAVDIILVVVDSSIEAGGGDRYIVELLENTETPVILGLNKS 140 Query: 141 DCVKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D +P+ Q + LV + SA G G D++ L + L P+ Y D Sbjct: 141 DQ-QPQNY--QPIDESYLVLAQAHNWPVIKFSALTGEGLDNLQKTLINLLEPGPYYYPPD 197 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR--QVIYVERPS 254 ++D P E+ RE++ +EIP+S +V EK EE L R I VER S Sbjct: 198 LVTDQPERFIMGELIREQILQQTRQEIPHSVAIVIEKVEET---PTLTRVFAAINVERDS 254 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G +K I EA++++ +++ V+L LFVKV+ W Sbjct: 255 QKGIIIGKKGAMLKAIGTEAREQMQKLITGEVYLQLFVKVEPQW 298 >gi|71280742|ref|YP_270776.1| GTP-binding protein Era [Colwellia psychrerythraea 34H] gi|71146482|gb|AAZ26955.1| GTP-binding protein Era [Colwellia psychrerythraea 34H] Length = 305 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 158/288 (54%), Gaps = 3/288 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+ +G +A+VG N GKSTL+N +G K+SI + K QTTR + GI++E+ Q V +DTP Sbjct: 7 NTYAGLIAIVGRPNVGKSTLLNALLGQKISITSKKPQTTRHRILGILTEENRQAVLVDTP 66 Query: 79 GIFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 G+ K + ++LM R + S+I +++ +V+ K + +L ++ + + IL++ Sbjct: 67 GLHTEEKRAINRLMNRAASSSIAEVELIMFLVEGTHWTKDD-ELVLSKVKQSGTPCILVV 125 Query: 138 NKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D + + LL + + + ATKGHG D + ++LP + + D Sbjct: 126 NKTDNIPDKDELLPHLQKLGAMHDFRDIVPICATKGHGVDTIRQLCLTSLPEGVFWFPED 185 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 I+D +EI REKL E+PYS V E+++ G I I +I VER SQK Sbjct: 186 HITDRSSRFMASEIIREKLIRFTGDELPYSITVEIEQFKMDDKGIIHINALILVERDSQK 245 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++++G G+ +KTI EA++++ + E V L +VKV+ W D + Sbjct: 246 RMVIGNKGERLKTIGQEARRDMENLFESKVFLETWVKVKSGWADDERA 293 >gi|320449719|ref|YP_004201815.1| GTP-binding protein Era [Thermus scotoductus SA-01] gi|320149888|gb|ADW21266.1| GTP-binding protein Era [Thermus scotoductus SA-01] Length = 301 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 164/295 (55%), Gaps = 9/295 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++ + SG VA+VG N GKSTL+N +G KV+ ++ + QTTR +RGI++E QIVF+ Sbjct: 1 MEEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGNRQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVN--IHDLLKEIAKRSSR 132 DTPG+ D+ + M + + + + V VVD H + + LK + + Sbjct: 61 DTPGLHKPMDALGEFMDQEVYEALSDVNAVVWVVDLRHPPTPEDELVAKALKPLVGKVP- 119 Query: 133 LILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ++L+ NK+D K PE L+ + L+ + M+SA ++ L + LP P+ Sbjct: 120 ILLVGNKLDAAKYPEEALKAY---HALLPEAEARMLSALDERQVAELKAELLALLPEGPF 176 Query: 192 VYSAD-QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 Y D SD + AEI RE+ L E+PY+ V TE+ E+++G + I+ V+YV Sbjct: 177 FYPEDFAKSDQDFGEWVAEIIREEAMKRLWHEVPYAVAVKTEEVAERENGILYIKAVLYV 236 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ERPSQK I++G+ G+ IK I A+K++ L + V+L L VKV DW DP+ Sbjct: 237 ERPSQKAIVIGEGGRKIKEIGQAARKQLEVFLNRQVYLDLEVKVYPDWRKDPEAL 291 >gi|113971182|ref|YP_734975.1| GTP-binding protein Era [Shewanella sp. MR-4] gi|114048420|ref|YP_738970.1| GTP-binding protein Era [Shewanella sp. MR-7] gi|117921464|ref|YP_870656.1| GTP-binding protein Era [Shewanella sp. ANA-3] gi|113885866|gb|ABI39918.1| GTP-binding protein Era [Shewanella sp. MR-4] gi|113889862|gb|ABI43913.1| GTP-binding protein Era [Shewanella sp. MR-7] gi|117613796|gb|ABK49250.1| GTP-binding protein Era [Shewanella sp. ANA-3] Length = 339 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 162/289 (56%), Gaps = 9/289 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA++G N GKSTL+NR +G K+SI + K QTTR + GI ++ QIVF+DTPG+ Sbjct: 46 GMVAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPRQIVFIDTPGLHI 105 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 + + ++LM R + S++ +V VVD + ++ + L + +R + +L +N Sbjct: 106 EEQRAINRLMNRAAASSLADVSMVIFVVDGMTWTADDEMVLSKLRRGGEERKT--VLAIN 163 Query: 139 KIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D +K + L E+A K F ++ +SA+KG +L +LP P+ + D Sbjct: 164 KVDNIKDKEALFPYLEEVAKKYPF-DEILPISASKGTNVKRILEMAAESLPENPFFFPED 222 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D +EI REKL L E+PY + V E+++ ++G I +I VER QK Sbjct: 223 YVTDRSQRFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQINALILVEREGQK 282 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++++G G+ I+TI+ +A+ ++ + + V L ++VKV+ W D + Sbjct: 283 RMVIGSKGERIRTIATQARLDMETLFDNKVFLEVWVKVKSGWADDERAL 331 >gi|34541717|ref|NP_906196.1| GTP-binding protein Era [Porphyromonas gingivalis W83] gi|34398035|gb|AAQ67095.1| GTP-binding protein Era [Porphyromonas gingivalis W83] Length = 299 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 155/278 (55%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V +VG N GKSTL+N VG ++SI+T K QTTR + GIV+ E QIV+ DTPG+ Sbjct: 9 RSGFVNIVGNPNVGKSTLINLLVGERISIITSKAQTTRHRIMGIVNTPEMQIVYSDTPGV 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M S S + AD++ V D + N D L +++ ++L++NKI Sbjct: 69 LRPNYKLQQEMREFSESALGDADVLVYVTDVVEKADKN-ADFLARVSRMECPVLLVINKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E L + E ++ + +SAT + + S +P +P + D ++D Sbjct: 128 DLSNQEALEQLVEEWRNILPKAEIHPLSATNNFNVGLLQKRIESLIPPSPPYFEKDALTD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPY++ VV E+++E+K I I+ +I VER SQK I++ Sbjct: 188 KPARFFVTEIIREKILLYYQKEIPYAAEVVVEEFKEEKT-IIRIKSLIIVERNSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G IK + A++++ + + L +FVKV+KDW Sbjct: 247 GPKGAAIKRVGSMARRDLERFFGKKIFLEIFVKVEKDW 284 >gi|225870931|ref|YP_002746878.1| GTP-binding protein Era homolog [Streptococcus equi subsp. equi 4047] gi|254783664|sp|C0MBF0|ERA_STRE4 RecName: Full=GTPase Era gi|225700335|emb|CAW94640.1| GTP-binding protein Era homolog [Streptococcus equi subsp. equi 4047] Length = 298 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K+++++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAVMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ + ++ L L + DQI+D Sbjct: 123 DKVHPDQLLEQIDDFRSQMDFKEIVPISALQGNNVETLVQLLKDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV + K +E D + IR I VER SQK I Sbjct: 183 HPERFLVSEMVREKVLHLTQQEVPHSVAVVVDSMKRDEVTD-KVHIRVTIMVERDSQKGI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 242 IIGKQGAMLKKIGKLARRDIELMLGDKVYLETWVKVKKNW 281 >gi|115377693|ref|ZP_01464886.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1] gi|115365299|gb|EAU64341.1| GTP-binding protein Era [Stigmatella aurantiaca DW4/3-1] Length = 313 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 160/300 (53%), Gaps = 18/300 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG AL+G N GKSTL+N+ G K++IV+ K QTTR+ + G+V+ E Q+ F+DTPGI Sbjct: 7 RSGFAALIGRPNVGKSTLLNQLTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAFIDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD----LLKEIAKRSSRLILI 136 AK ++ M+ ++ + D+V VVD K+ + +L+ + K L+ Sbjct: 67 HQAKGELNRYMVEVALQAAEEVDLVLFVVDVPGGEKLEVGPGNRMILERLQKLGKPTFLV 126 Query: 137 LNKIDCVKPERLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID + +L ++ N+ F E +SA +G G D + LP ++ Sbjct: 127 INKIDTLPKALILPLIDLYRNEFPFAE-VVPISAREGDGVDRLFQVALQHLPEGERIFDE 185 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD------------GSIL 243 D ++D +E RE++ H +EIPYS+ V+ E ++E + G I Sbjct: 186 DMLTDQQERTLVSEYIREQVLRHCRQEIPYSTAVLVEVFDESEREPRPDAPPGPLAGLIR 245 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I IYVER SQK I++GK GQ +KTI +A+K I +L V+L L V+V+ W P+ Sbjct: 246 IAASIYVERDSQKAIIIGKQGQMLKTIGTDARKAIQRLLGAHVYLSLRVRVEPRWSDRPE 305 >gi|311742993|ref|ZP_07716801.1| GTP-binding protein Era [Aeromicrobium marinum DSM 15272] gi|311313673|gb|EFQ83582.1| GTP-binding protein Era [Aeromicrobium marinum DSM 15272] Length = 305 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 151/294 (51%), Gaps = 11/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG N GKSTL N VG KV+I + + QTTR +RG+V ++QIV +DTPG+ Sbjct: 5 RSGFACFVGRPNVGKSTLTNALVGGKVAITSSRPQTTRHAIRGLVHRPDAQIVLVDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILILNK 139 + + + L +T D + L + + + L++EIA R +I + K Sbjct: 65 HRPRTLLGQRLNDLVRTTWAEVDTIGLCLPADERIGPGDRFLIREIAALRGKPVIAVATK 124 Query: 140 IDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V P+R+ E QA + + VSA + + + +TLP P +Y Sbjct: 125 TDLVSPQRVAEHLMAIQAAGEEAGLRWHEMVPVSAVADDQVGLLADLIVATLPEGPALYP 184 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQVIY 249 Q++D P AE+ RE + E+P+S VV ++ ++ S I +R +Y Sbjct: 185 EGQLTDEPEATLVAEVIREAALEGVRDELPHSLAVVVDEMVPREGRSADNPLIDVRVNVY 244 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK I++GK G ++ I ++ +I +IL PV+L L VKV K+W DPK Sbjct: 245 VERDSQKGIIIGKQGSRLREIGTTSRAQIEKILGTPVYLDLHVKVAKEWQRDPK 298 >gi|254428300|ref|ZP_05042007.1| GTP-binding protein Era [Alcanivorax sp. DG881] gi|196194469|gb|EDX89428.1| GTP-binding protein Era [Alcanivorax sp. DG881] Length = 292 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 156/286 (54%), Gaps = 7/286 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V++VG N GKSTL+N +G KVSI + K QTTR + GI+S QI+F DTPGI Sbjct: 1 MVSIVGRPNVGKSTLMNHLIGQKVSITSRKPQTTRHRIHGILSRDNYQIIFADTPGIHTG 60 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ + ++ M + ST+ D++C++VD+ + + H L K ++LI+NK+D Sbjct: 61 QEKALNRAMNEAAVSTLFGVDVICMMVDAMKWTPADEHVLSLLPEKDQVPVLLIINKVDN 120 Query: 143 VKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 V + LL + ++ + VSA + ++ L LP + Y DQ++D Sbjct: 121 VDDKAALLPHIQTLSERYPFDAVIPVSALREQNLVELEKALVQRLPEGEFWYEEDQLTDR 180 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL--IRQVIYVERPSQKKIM 259 + AEI REK+ L +E+P+ V E WE DG + I I VER QKKI+ Sbjct: 181 SLRFMVAEIIREKVVRQLGQEVPHQVSVEVEMWE---DGPRVTEISAAILVERRGQKKIL 237 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G G+ IK I ++A+++I ++E+ V L L+VK++ W D + Sbjct: 238 IGDKGERIKQIGIQAREDIERLIERKVMLNLWVKIKAGWSDDARAL 283 >gi|162447802|ref|YP_001620934.1| GTP-binding protein [Acholeplasma laidlawii PG-8A] gi|161985909|gb|ABX81558.1| GTP-binding protein [Acholeplasma laidlawii PG-8A] Length = 295 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 162/290 (55%), Gaps = 4/290 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S+SG +A++G N GKSTL+N +G K++I + KVQTTR + GI++E E+Q VF+DTPG Sbjct: 3 SKSGFIAIIGKPNVGKSTLINALIGEKIAITSPKVQTTRFRITGILNEGENQFVFIDTPG 62 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K M + + + AD + VVD I +L+ I +IL++NK Sbjct: 63 MHKPYHGLGKSMDKSATDALMDADAIMWVVDQTYRRTDEI--ILERIKHSHLPVILVINK 120 Query: 140 IDCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID ++ + +++ I+ K+ + +SA + L L P Y D + Sbjct: 121 IDTLENKAEIDKIIISFLKVHEFKHIVPISAKDQTHLTQLKETLVEYLVEGPHYYPDDYV 180 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKK 257 +D EI RE++ + +E+P+S V+ E ++ ++ ++ I +I VER SQK Sbjct: 181 TDQTDESRMTEIIRERILYYTEQEVPHSVAVMLESFKFNEELNTMDIDALIIVERDSQKG 240 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 I++GKNG+ +K I EA+KEI +I + +HL L+VKV+KDW +DP + Sbjct: 241 ILIGKNGEKLKRIGTEARKEINKIFDMKIHLSLWVKVKKDWRNDPTTVSR 290 >gi|167772058|ref|ZP_02444111.1| hypothetical protein ANACOL_03432 [Anaerotruncus colihominis DSM 17241] gi|167665856|gb|EDS09986.1| hypothetical protein ANACOL_03432 [Anaerotruncus colihominis DSM 17241] Length = 303 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 163/284 (57%), Gaps = 2/284 (0%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q ++S VA+VG N GKS+L+N VG KV+IV+ K QTTR+ + G++++ ++Q+VF+D Sbjct: 7 QFETKSAFVAIVGRPNVGKSSLLNALVGEKVAIVSSKPQTTRTRITGVLTDGDTQLVFID 66 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ + + M+R ++ D+ LVV+ ++ L+ + +L+ Sbjct: 67 TPGLHKPRTKLSEYMVRQVGDSVADVDVAVLVVEPGDVIQKAEQSLIDSFTAQRIPAVLV 126 Query: 137 LNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID + + E+L+ Q + + E VSA G G +VL+ L L+P+ + A Sbjct: 127 INKIDTLAEKEKLMAQIALFMRAYAFEAVIPVSALHGDGVGNVLSELRRFAALSPFFFDA 186 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV-IYVERPS 254 D ++D P AEI REKL L E+P+ + V E +E+ D ++ QV IY ER S Sbjct: 187 DTLTDQPERVIVAEIVREKLLRSLFDEVPHGTAVSVESMKERADKDVMDIQVQIYCERES 246 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K +++G+ G +K I+ +A+++I L V+L +VKV++DW Sbjct: 247 HKGMIIGRGGAMLKKIASQARQDIEHFLGCRVNLQCWVKVREDW 290 >gi|237742515|ref|ZP_04572996.1| GTP binding protein [Fusobacterium sp. 4_1_13] gi|229430163|gb|EEO40375.1| GTP binding protein [Fusobacterium sp. 4_1_13] Length = 298 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 102/291 (35%), Positives = 163/291 (56%), Gaps = 23/291 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + M ++ +K DI+ ++D+ + + + D + E AK+ + IL++ Sbjct: 62 HKPQHLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPK-ILLV 120 Query: 138 NKIDCVKPERLLEQAEIA-------NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK+D + E+ E+ + NK++F VS G +L L L Sbjct: 121 NKVDLISDEQKEEKLKEIKEKLGEFNKIIF------VSGMYSFGISQLLEALDPYLEEGV 174 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVV---TEKWEEKKDGSILIRQV 247 Y D +D+ + EI REK+ L EIP+S V E+ E KKD + Sbjct: 175 KYYPDDMYTDMSTYRIITEIVREKILLKTRDEIPHSVAVEIINVERKEGKKDKFDI---N 231 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 IYVER SQK I++GK+G+ +K I +EA+KEI E+L + ++L L+VKV+ DW Sbjct: 232 IYVERDSQKGIIIGKDGKMLKEIGVEARKEIEELLGEKIYLGLWVKVKDDW 282 >gi|220912720|ref|YP_002488029.1| GTP-binding protein Era [Arthrobacter chlorophenolicus A6] gi|219859598|gb|ACL39940.1| GTP-binding protein Era [Arthrobacter chlorophenolicus A6] Length = 319 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 155/296 (52%), Gaps = 13/296 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G LVG NAGKSTL N VG KV+I + K QTTR +RGIV ++Q++ +DTPG+ Sbjct: 17 RAGFSVLVGRPNAGKSTLTNALVGKKVAITSAKPQTTRHTIRGIVHRDDAQLILVDTPGL 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + K + L T+ D + + ++ ++ + ++A + +I I+ K Sbjct: 77 HRPRTLLGKRLNDLVADTLAEVDAIGFCLPANEKIGPGDKFIAAQLAAVGGKPVIAIVTK 136 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAPWV 192 D V + L EQ + L V E + VSA G D V + L S +P +P + Sbjct: 137 ADLVDKQALTEQLLAVDALGREVLGEDGWRDIVPVSANDGFQVDTVADVLISHMPPSPPL 196 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSIL-IRQV 247 Y +++D P AE+ RE + E+P+S VV E + + +D +L +R Sbjct: 197 YPDGELTDEPEAVMVAELIREAALEGVRDELPHSLAVVVEEIVPREDRPEDNPLLDVRVN 256 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +YVERPSQK I++GK G ++ + A+K I +L ++L L VKV KDW DPK Sbjct: 257 LYVERPSQKAIIIGKGGSRLREVGTNARKGIEALLGTRIYLDLHVKVAKDWQRDPK 312 >gi|183599776|ref|ZP_02961269.1| hypothetical protein PROSTU_03284 [Providencia stuartii ATCC 25827] gi|188022040|gb|EDU60080.1| hypothetical protein PROSTU_03284 [Providencia stuartii ATCC 25827] Length = 302 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 160/290 (55%), Gaps = 13/290 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E E QI+++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDEYQIIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD----LLKEIAKRSSRLILIL 137 K + ++LM R + S+I ++V VV+ N D +L ++ +IL + Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEG-----TNWTDDDEMVLNKLKGLRCPVILAI 123 Query: 138 NKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NKID V + +L ++ K+ F++ +SA KG G D + + +P A + Sbjct: 124 NKIDNVTDKTVLLPHIGFVSQKMNFLD-VVPISAEKGKGVDTIAKIVKQHIPEAEHHFPE 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D +EI REKL L E+PYS V E+++ + G I +I VER Q Sbjct: 183 DYITDRSQRFMASEIIREKLMRFLGDELPYSVTVEIEQFKMMERGGYHINGLILVEREGQ 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 KK+++G G +KTI EA+ ++ ++ + VHL L+VKV+ W D + Sbjct: 243 KKMVIGNKGSKLKTIGTEARIDMEKLFDTKVHLELWVKVKAGWADDERAL 292 >gi|330814141|ref|YP_004358380.1| GTP-binding protein Era [Candidatus Pelagibacter sp. IMCC9063] gi|327487236|gb|AEA81641.1| GTP-binding protein Era [Candidatus Pelagibacter sp. IMCC9063] Length = 275 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 97/276 (35%), Positives = 163/276 (59%), Gaps = 5/276 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+ G TN+GKSTL+N KVSIV+HKVQTT + + + ++QIVF+DTPG Sbjct: 4 KSGFVAISGPTNSGKSTLLNSIFEKKVSIVSHKVQTTLKSLDAVKNYGDTQIVFIDTPGY 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K+ + I+ S+I+ +D++ +++D + + + K + + LI+NKI Sbjct: 64 YQKKNDAN--FIKDVLSSIERSDLLLIILDITSRFEY-LEQIEKIVKNYKKKKFLIINKI 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E +LE+ + + ++ F +SA K +LN++ +LP W+Y + ++ Sbjct: 121 DLVNNEYVLEKLSTISFIKNFDEVFYLSALKNKNIKKLLNHVSKSLPTQEWIYKKNNSTN 180 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + +F AEITRE + +L++EIPY + TEK + ++ + I Q I V S KKI+L Sbjct: 181 ISKENFLAEITREGILKYLNQEIPYQVSIETEKLVKSQNYT--IHQKITVSTISHKKIIL 238 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 GKNG IK+I + A+ E+ ++L+ +L L V ++K Sbjct: 239 GKNGSAIKSIGVYARIEMEKVLKAKCNLFLKVVLKK 274 >gi|212710662|ref|ZP_03318790.1| hypothetical protein PROVALCAL_01728 [Providencia alcalifaciens DSM 30120] gi|212686743|gb|EEB46271.1| hypothetical protein PROVALCAL_01728 [Providencia alcalifaciens DSM 30120] Length = 302 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 104/288 (36%), Positives = 157/288 (54%), Gaps = 5/288 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E QI+++DTPG Sbjct: 6 SHCGFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDNYQIIYVDTPG 65 Query: 80 I-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + K + ++LM R + S+I ++V VV+ + +L +++ +IL +N Sbjct: 66 LHIEEKRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVLNKLSSLRCPVILAIN 124 Query: 139 KIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V K L I+ K+ F++ +SA KG G D + + +P A + D Sbjct: 125 KIDNVVDKTSLLPHIGMISQKMNFLD-VVPISAEKGTGVDTIAKIVKQHIPEAIHHFPED 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 I+D +EI REKL L E+PYS V E+++ G I +I VER QK Sbjct: 184 YITDRSQRFMASEIIREKLMRFLGDELPYSVTVEIEQFKVMDKGGYHINGLILVEREGQK 243 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 K+++G G +KTI EA+ ++ + E VHL L+VKV+ W D + Sbjct: 244 KMVIGNKGSKLKTIGTEARIDMERLFETKVHLELWVKVKSGWADDERA 291 >gi|225011396|ref|ZP_03701834.1| GTP-binding protein Era [Flavobacteria bacterium MS024-2A] gi|225003899|gb|EEG41871.1| GTP-binding protein Era [Flavobacteria bacterium MS024-2A] Length = 296 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 158/284 (55%), Gaps = 6/284 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q +SG +++VG N GKSTL+N VG ++SI+T K QTTR + GI++ + Q+V D Sbjct: 3 QKKHKSGFISIVGNPNVGKSTLMNALVGKELSIITAKAQTTRHRILGIINGDDFQMVLSD 62 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ M+ + D++ +V S E ++ L ++I K + L+++ Sbjct: 63 TPGVIKPAYEMQTSMMNFVKEALIDGDVLVYLV-SPEETELKDEKLFEKIKKTKAPLLIL 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKT-FMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID + E LE + + + F + T + +SA G ++L+ L LP +P + Sbjct: 122 INKIDLISQEA-LEASVLHWQTEFPKATVYPISALTGFFVPELLDILIGHLPESPAYFPK 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQ++D P F E RE++ KEIPY+ VVTE + E D I+ IR VI VER + Sbjct: 181 DQLTDKPERFFVNESIREQILELYSKEIPYAVEVVTEDFLE--DSKIIKIRSVIMVERET 238 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++G G +K + + A+K + + +HL L+VKV K+W Sbjct: 239 QKGIIIGHKGSALKRVGIGARKSLEAFFGKQIHLELYVKVSKNW 282 >gi|320537379|ref|ZP_08037334.1| GTP-binding protein Era [Treponema phagedenis F0421] gi|320145844|gb|EFW37505.1| GTP-binding protein Era [Treponema phagedenis F0421] Length = 295 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 159/282 (56%), Gaps = 5/282 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V ++G +AGKST +N G KVSIV+ QTTR+ VRGIV+ + QIVF+DTPG Sbjct: 2 RSGIVTIIGRPSAGKSTFLNTACGEKVSIVSDIPQTTRNAVRGIVNTNKGQIVFIDTPGY 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ ++K + ++ + + AD + +VDS +E V + ++ +++++ LNK+ Sbjct: 62 HASEKKFNKQLQEITCAKLAEADAILYLVDSSKEFGVEEESICALLSTLQNKIVIGLNKV 121 Query: 141 DCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D + + L I N+L + + + +SA K +++L+ L + LP +Y D Sbjct: 122 DLPEAKPQLLTVNITNRLSEIPLNRFIQISAEKDQKINELLSCLMTLLPEGEPLYPPDFY 181 Query: 199 SDL-PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 +D P F T EI RE+ LH +E+P++ V E E KKDG L R I V+R QK Sbjct: 182 TDQDPAFRIT-EIIREQAILHTREEVPHALYVGIEDLEMKKDGKALWCRAFIAVDREGQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +++GK+ IK I + A + + +I + L + VKV K+W Sbjct: 241 AMLIGKDAAVIKNIRITAIRTLRKIFPYKIDLDIRVKVDKNW 282 >gi|46200176|ref|YP_005843.1| GTP-binding protein Era [Thermus thermophilus HB27] gi|55980089|ref|YP_143386.1| GTP-binding protein Era [Thermus thermophilus HB8] gi|81364712|sp|Q5SM23|ERA_THET8 RecName: Full=GTPase Era gi|56966801|pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From Thermus Thermophilus Hb8 gi|46197804|gb|AAS82216.1| GTP-binding protein era [Thermus thermophilus HB27] gi|55771502|dbj|BAD69943.1| GTP-binding protein Era [Thermus thermophilus HB8] Length = 301 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 161/293 (54%), Gaps = 9/293 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + + SG VA+VG N GKSTL+N +G KV+ ++ + QTTR +RGI++E QIVF+DT Sbjct: 3 EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVN--IHDLLKEIAKRSSRLI 134 PG+ D+ + M + + + + V VVD H + + LK + + ++ Sbjct: 63 PGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-IL 121 Query: 135 LILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L+ NK+D K PE E + ++L+ + M+SA ++ L + +P P+ Y Sbjct: 122 LVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFY 178 Query: 194 SADQI-SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 D SD + AEI RE+ L E+PY+ E+ E+++G + I+ ++YVER Sbjct: 179 PEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVER 238 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 PSQK I++G+ G+ IK I +K++ +L + V+L L VKV DW DP+ Sbjct: 239 PSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEAL 291 >gi|119471906|ref|ZP_01614214.1| GTP-binding protein era [Alteromonadales bacterium TW-7] gi|119445279|gb|EAW26569.1| GTP-binding protein era [Alteromonadales bacterium TW-7] Length = 310 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 163/286 (56%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N + KVSI + K QTTR + GI +E + Q V++DTPG+ Sbjct: 19 GMIAIVGRPNVGKSTLLNEIIEQKVSITSRKPQTTRHRIMGIHTEGKHQAVYVDTPGLHI 78 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I +++ VV+ + +L ++++ ++L++NKID Sbjct: 79 EEKRAINRLMNRAASSSIGDVELIIFVVEG-THWTADDEMVLNKVSQSGKPVMLVINKID 137 Query: 142 CVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK L+ + +K F+ VSA +G D + + + LP + + D ++ Sbjct: 138 QVKDRDLVLPHMKLLGDKFDFV-SIMPVSAKQGKNIDLIKDEVTKRLPPCEFYFPDDYVT 196 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D M AE+ REKL + +E+PYS V E+++ +++G I +I VER +QK+++ Sbjct: 197 DRSMRFMAAEVIREKLMRFMGEELPYSVTVEIEQFKWQENGVWHINGLILVERETQKRMV 256 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G G+ +K I EA+K++ E+L+ V L L+VKV+ W D + Sbjct: 257 IGNKGEKLKVIGREARKDLEEMLDNKVFLELWVKVKSGWADDERAL 302 >gi|74318103|ref|YP_315843.1| GTPase [Thiobacillus denitrificans ATCC 25259] gi|74057598|gb|AAZ98038.1| GTPase [Thiobacillus denitrificans ATCC 25259] Length = 297 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 161/286 (56%), Gaps = 11/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+NR VG KVSI + K QTTR V GI + +Q VF+DTPG Sbjct: 8 RCGLVAIVGRPNVGKSTLLNRLVGQKVSITSRKAQTTRHRVMGIHTTDRAQFVFVDTPG- 66 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + + ++ M + T+ D+V ++V++ R + + + E+ + L+L++N Sbjct: 67 FQTRHTSTMNRAMNKRVRETLSDTDVVMMLVEAGRLTREDRQ--VMELLPKDRPLLLVVN 124 Query: 139 KIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D K L ++A F E VSA +G D++L L LP P ++ D Sbjct: 125 KVDQAKDRAALMAYLQQVAAAHAFTE-IVPVSAKQGSNLDELLKTLEKHLPENPPLFGED 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQ 255 ++D AE+ REK+F +EIPY+ VV +K+EE +G++ I I V+R S Sbjct: 184 HVTDQTERQLAAELIREKVFRLCGEEIPYAVAVVIDKFEE--EGNLRRIFATILVDRDSH 241 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ +KTIS +A+ ++ + V+L ++VKV+ W D Sbjct: 242 KAIVIGKGGEKLKTISTQARLDMEHAFDGRVYLEVWVKVKGGWADD 287 >gi|282861802|ref|ZP_06270866.1| GTP-binding protein Era [Streptomyces sp. ACTE] gi|282563618|gb|EFB69156.1| GTP-binding protein Era [Streptomyces sp. ACTE] Length = 321 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 160/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG+KV+I +++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 21 RAGFACFVGRPNAGKSTLTNALVGSKVAITSNRPQTTRHTVRGIVHRSDAQLILVDTPGL 80 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L ++KE+A R + I I Sbjct: 81 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDKFIVKELAGIRKTPKIAI 137 Query: 137 LNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V + L EQ + + +L F + VSA + D + + + LP +P Sbjct: 138 ITKTDLVDSKTLAEQLLAVSRLGEELGFEWAQIVPVSAVQDRQVDLLADLIAPLLPESPP 197 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 198 LYPEGDLTDEPELVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIHA 257 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + +++K I +L PV L L VKV KDW DPK Sbjct: 258 NVYIERPSQKGIIIGPKGKRLKDVGTKSRKHIEALLGTPVFLDLHVKVAKDWQRDPK 314 >gi|309775528|ref|ZP_07670528.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 3_1_53] gi|308916622|gb|EFP62362.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 3_1_53] Length = 299 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 101/279 (36%), Positives = 158/279 (56%), Gaps = 3/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G NAGKSTL+N + KV+I T K QTTR+ + GI++ +++Q VF+DTPGI Sbjct: 4 KSGFISIIGRPNAGKSTLLNAILQEKVAITTPKPQTTRNNISGILTREDAQFVFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + + R +++ I AD+ +VD+ + +L+++ + LILNKI Sbjct: 64 HKPKHELGRTLNRNAYTAIAEADVNYWMVDATQPFGSGDEFILEKMKGAHIPVFLILNKI 123 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + E +L + +++ F E F VSA K + +L L + D IS Sbjct: 124 DLLDKEAVLTTLTKWQSRMQFAE-IFPVSALKRENVEHLLEVTKQYLQEGVKYFPDDMIS 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AEI REK+ ++E+P+S V+ EK EE D I + +I VER SQK I+ Sbjct: 183 DHGENFQIAEIIREKVLYKTNEEVPHSVAVIVEKKEE-SDARIDLSALIVVERSSQKSIL 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK G I+ I L A+KE+ E + V L L+V+V+K+W Sbjct: 242 IGKQGAMIRGIRLAAQKELKEKFNKKVELELYVRVEKNW 280 >gi|53804478|ref|YP_113919.1| GTP-binding protein Era [Methylococcus capsulatus str. Bath] gi|53758239|gb|AAU92530.1| GTP-binding protein Era [Methylococcus capsulatus str. Bath] Length = 293 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 163/287 (56%), Gaps = 4/287 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VALVG N GKSTL+N +G K+SIV+ + QTTR + GI ++ Q++++DTPGI Sbjct: 2 KSGYVALVGRPNVGKSTLLNHLLGQKLSIVSRRPQTTRHRILGIKTDGRGQVIYVDTPGI 61 Query: 81 F-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 A+ + ++ + R + S++ D++ +VD L + ++ I + +IL++NK Sbjct: 62 HGGARRAMNRYLNRTAISSLLGVDVILWLVDRAGWLP-DDELVMARIKEAKLPVILVINK 120 Query: 140 IDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D ++ + LL AN + +SA KG + + + LP +Y DQI Sbjct: 121 VDRIEGKDTLLPFLAEANATGLFSEIVPISALKGINLAVLEERVLALLPEGEPIYPEDQI 180 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD P F AEI REKLF L +E+P++ V E++ E + I VI+VER QK I Sbjct: 181 SDRPERFFVAEIIREKLFNRLTQEVPHALTVQIEQYRESPT-LVRIHAVIWVEREGQKAI 239 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++GK G+ +K + +++E+ +LE+ V+L L+ KV+ W + + Sbjct: 240 VIGKGGEVLKRVGEASRRELERMLERRVYLELWTKVKHGWSDNERAL 286 >gi|118618892|ref|YP_907224.1| GTP-binding protein Era [Mycobacterium ulcerans Agy99] gi|118571002|gb|ABL05753.1| GTP-binding protein Era [Mycobacterium ulcerans Agy99] Length = 300 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 156/287 (54%), Gaps = 5/287 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V LVG N GKSTL N VG KV+I + + QTTR +RGIV + QI+ +DTPG+ Sbjct: 7 SGFVCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHRESFQIILVDTPGLH 66 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNK 139 + K + L T D++ L + + + ++++IA + +L++I+ K Sbjct: 67 RPRTLLGKRLNDLVRDTYSEVDVIGLCIPADESIGPGDRWIIEQIAATAPKVKLVVIVTK 126 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V +++ Q ++LV + VSA G + +++ L TLP P Y ++ Sbjct: 127 IDKVPKDQVAAQLVAVSELVTNSAEIVPVSAVTGAQVEVLIDVLARTLPQGPAYYPDGEL 186 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQK 256 +D P AE+ RE +H E+P+S VV ++ E ++ I + V+YVER SQK Sbjct: 187 TDEPEEVLMAELIREATLEGVHDELPHSLAVVIDEVSPREGREDLIDVHAVLYVERDSQK 246 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++GK G ++ + A+ +I ++L ++L L VKV K+W DPK Sbjct: 247 GIIIGKGGARLREVGTAARSQIEKLLGTKIYLDLRVKVAKNWQRDPK 293 >gi|331269998|ref|YP_004396490.1| GTP-binding protein Era [Clostridium botulinum BKT015925] gi|329126548|gb|AEB76493.1| GTP-binding protein Era [Clostridium botulinum BKT015925] Length = 294 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 159/278 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKSTL+N +G K+SIV+ + QTTR+ +R I+++++ Q+VFLDTPGI Sbjct: 3 KSGFISIIGRPNVGKSTLINEILGEKLSIVSCRPQTTRNNIRAILTKEDYQLVFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M++ + S+ D++ + E+ +L+ I + + LI+NKI Sbjct: 63 HKPRHKLGEYMVKAAESSKDEVDLIVFITTPQSEIGKGDELILENIKNSNKPVFLIVNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D PE + E + ++ + ++ +SA K D +L+ + +P P Y D I+D Sbjct: 123 DENPPELVAETLKKYSEYMEFKEIIPISAQKNKNVDTLLDLMIKYMPEGPKYYPDDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + +EI REK L +E+P+ V ++ K+G+ I + E+ S K I++ Sbjct: 183 VQERFVVSEIIREKALKLLSEEVPHGIAVEIISMKQAKNGTYHIDANLLCEKDSHKGIVI 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK GQ +K I A+++I++ L+ V+L ++V+V+K+W Sbjct: 243 GKGGQMLKRIGTYARQDISKFLDAKVNLKVWVRVKKEW 280 >gi|225868116|ref|YP_002744064.1| GTP-binding protein Era homolog [Streptococcus equi subsp. zooepidemicus] gi|259646273|sp|C0MCD8|ERA_STRS7 RecName: Full=GTPase Era gi|225701392|emb|CAW98467.1| GTP-binding protein Era homolog [Streptococcus equi subsp. zooepidemicus] Length = 298 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K Q+TR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQSTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ + ++ L L + DQI+D Sbjct: 123 DKVHPDQLLEQIDDFRSQMDFKEIVPISALQGNNVETLVQLLKDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV + K +E D + IR I VER SQK I Sbjct: 183 HPERFLVSEMVREKVLHLTQQEVPHSVAVVVDSMKRDEVTD-KVHIRVTIMVERDSQKGI 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +L V+L +VKV+K+W Sbjct: 242 IIGKQGAMLKKIGKLARRDIELMLGDKVYLETWVKVKKNW 281 >gi|183983654|ref|YP_001851945.1| GTP-binding protein Era [Mycobacterium marinum M] gi|183176980|gb|ACC42090.1| GTP-binding protein Era [Mycobacterium marinum M] Length = 300 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 156/287 (54%), Gaps = 5/287 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V LVG N GKSTL N VG KV+I + + QTTR +RGIV + QI+ +DTPG+ Sbjct: 7 SGFVCLVGRPNTGKSTLTNALVGTKVAITSMRPQTTRHTIRGIVHRESFQIILVDTPGLH 66 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNK 139 + K + L T D++ L + + + ++++IA + +L++I+ K Sbjct: 67 RPRTLLGKRLNDLVRDTYSEVDVIGLCIPADESIGPGDRWIIEQIAATAPKVKLVVIVTK 126 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V +++ Q ++LV + VSA G + +++ L TLP P Y ++ Sbjct: 127 IDKVPKDQVAAQLVAVSELVTNSAEIVPVSAVTGAQVEVLIDVLARTLPQGPAYYPDGEL 186 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQK 256 +D P AE+ RE +H E+P+S VV ++ E ++ I + V+YVER SQK Sbjct: 187 TDEPEEVLMAELIREAALEGVHDELPHSLAVVIDEVSPREGREDLIDVHAVLYVERDSQK 246 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++GK G ++ + A+ +I ++L ++L L VKV K+W DPK Sbjct: 247 GIIIGKGGARLREVGTAARSQIEKLLGTKIYLDLRVKVAKNWQRDPK 293 >gi|262373077|ref|ZP_06066356.1| GTP-binding protein Era [Acinetobacter junii SH205] gi|262313102|gb|EEY94187.1| GTP-binding protein Era [Acinetobacter junii SH205] Length = 341 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 105/312 (33%), Positives = 167/312 (53%), Gaps = 16/312 (5%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 24 FFSSQGTTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSR 83 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++SQ VF+DTPG+ + + +K+M R + S ++ ++V VVD+ + + N +L+++ Sbjct: 84 EKSQAVFVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVVDAQKWTQ-NDELVLEKL 142 Query: 127 AKRSSRLILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 +IL++NK+D K E L E A + F E VSA +G + + + + Sbjct: 143 KNAEMPVILVINKLDTFENKNEALPLIRERAKLMDFAE-IVPVSALRGANLEHLRDTIEK 201 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEK 233 LP +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 202 YLPYQAPLYSLDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEK 261 Query: 234 WEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 K I I+VER QK I++G G +K+I ++A+ ++ ++ EQ + L L+VK Sbjct: 262 TGRLKPPCTYIDATIFVERQGQKAIVIGDKGAKLKSIGMDARTDMEKMFEQKIMLTLWVK 321 Query: 294 VQKDWGHDPKCC 305 V+ W D + Sbjct: 322 VKGGWSDDERAL 333 >gi|257464226|ref|ZP_05628605.1| GTP-binding protein Era [Fusobacterium sp. D12] gi|317061746|ref|ZP_07926231.1| GTP-binding protein era [Fusobacterium sp. D12] gi|313687422|gb|EFS24257.1| GTP-binding protein era [Fusobacterium sp. D12] Length = 296 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 154/279 (55%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ + Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLMNKLVAEKVAIVSDKAGTTRDNIKGILNVQGKQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M ++ + K AD + ++D +E+ + ++I + +++++NKI Sbjct: 62 HKPKHLLGEYMTDIAIRSFKDADAILFLLDGTQEISTGDFFVWEKIKETRKPVVVLVNKI 121 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + + E+ AEI KL K VS G +L L L Y D + Sbjct: 122 DKISDLEIEEKKAEIVEKLGEGLKVVFVSGMYSFGLTRLLEALEEYLEEGIQYYPEDMYT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+ ++ EI REK+ EIP+S + E+K+ IYVER SQK I+ Sbjct: 182 DMSVYRMITEIVREKILEKTRDEIPHSVAIEILNVAERKEAKDKFDINIYVERASQKGIL 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNG+ +K I EA+KEI +LE+ ++L L+VKV+ DW Sbjct: 242 IGKNGKMLKEIGSEARKEIESLLERKIYLTLWVKVKDDW 280 >gi|169628762|ref|YP_001702411.1| GTP-binding protein Era [Mycobacterium abscessus ATCC 19977] gi|169240729|emb|CAM61757.1| GTP-binding protein Era homolog [Mycobacterium abscessus] Length = 304 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 158/292 (54%), Gaps = 10/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG KV+I +++ QTTR +RGIV + QIV +DTPG+ Sbjct: 7 RSGFVCFVGRPNTGKSTLTNALVGQKVAITSNRPQTTRHTIRGIVHRENFQIVLVDTPGL 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L T D++ L + + + I++ +K +A R++ LI I+ Sbjct: 67 HRPRTLLGQRLNDLVRDTYSEVDVIGLCIPADEGIGPGDKWIYEQIKLVAPRTT-LIAIV 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V ER+ EQ ++LV E + VSA G + + L S L P Y Sbjct: 126 TKIDKVSKERVAEQLLSVSQLVGKEVDIVPVSAVSGAQVEVLTEVLASKLQPGPAFYPDG 185 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK---DGSILI--RQVIYVE 251 +++D P AE+ RE + E+P+S VV ++ E++ +GS LI ++YVE Sbjct: 186 ELTDEPEEVLMAELIREAALEGVRDELPHSLAVVIDECSEREGRPEGSELIDVHAILYVE 245 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 R SQK I++GK G ++ + A+ +I ++L V L L VKV K+W DPK Sbjct: 246 RDSQKGIVIGKGGARLREVGTNARTQIEKLLGTKVFLDLRVKVAKNWQRDPK 297 >gi|294782449|ref|ZP_06747775.1| GTP-binding protein Era [Fusobacterium sp. 1_1_41FAA] gi|294481090|gb|EFG28865.1| GTP-binding protein Era [Fusobacterium sp. 1_1_41FAA] Length = 297 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 161/283 (56%), Gaps = 8/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + M ++ + +K DI+ ++D+ + + ++ I + S++ IL++NK Sbjct: 62 HKPQHLLGEYMTNIAVNILKDVDIILFLIDASKTIGTGDMFVMDRINENSNKPKILLVNK 121 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D + ++ + EI KL +K SA G +L L L Y D Sbjct: 122 VDLISDEQKEEKLKEIEEKLGKFDKIIFASAMYSFGIAQLLEALDPYLEEGVKYYPDDMY 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVV---TEKWEEKKDGSILIRQVIYVERPSQ 255 +D+ + EI REK+ L EIP+S V E+ E KKD IYVER SQ Sbjct: 182 TDMSTYRIITEIVREKILLKTRDEIPHSVAVEIIDVERNEGKKDK---FNINIYVERDSQ 238 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GKNG+ +K I +EA++EI ++L + ++L L+VKV+ DW Sbjct: 239 KGIIIGKNGKMLKDIGMEARQEIEDLLGEKIYLGLWVKVKDDW 281 >gi|15803092|ref|NP_289123.1| GTP-binding protein Era [Escherichia coli O157:H7 EDL933] gi|12516983|gb|AAG57681.1|AE005487_5 GTP-binding protein [Escherichia coli O157:H7 str. EDL933] Length = 301 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 161/295 (54%), Gaps = 13/295 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QT + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTXXHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVATIAAIVRKHLPEAT 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + D I+D +EI REKL L E+PYS V E++ + G I +I V Sbjct: 178 HHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 238 EREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 292 >gi|237745211|ref|ZP_04575692.1| GTP binding protein [Fusobacterium sp. 7_1] gi|229432440|gb|EEO42652.1| GTP binding protein [Fusobacterium sp. 7_1] Length = 298 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 161/285 (56%), Gaps = 11/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + M ++ +K DI+ ++D+ + + + D + E AK+ + IL++ Sbjct: 62 HKPQHLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDIFVMDRINENAKKKPK-ILLV 120 Query: 138 NKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D + ++ + EI KL +K S G +L L L Y D Sbjct: 121 NKVDLISDEQKKEKLKEIEEKLGNFDKIIFASGMYSFGISQLLESLDPYLEEGVKYYPDD 180 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVV---TEKWEEKKDGSILIRQVIYVERP 253 +D+ + EI REK+ L EIP+S V E+ E KKD + IYVER Sbjct: 181 MYTDMSTYRIITEIVREKILLKTRDEIPHSVAVEIINVERKEGKKDKFDI---NIYVERD 237 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GK+G+ +K I +EA+KEI E+L + ++L L+VKV+ DW Sbjct: 238 SQKGIIIGKDGKMLKEIGVEARKEIEELLGEKIYLGLWVKVKDDW 282 >gi|296328716|ref|ZP_06871231.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154153|gb|EFG94956.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 296 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 159/283 (56%), Gaps = 8/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + M ++ +K DI+ ++D+ + + ++ I + S + IL++NK Sbjct: 62 HKPQHLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMNRINENSKKPRILLVNK 121 Query: 140 IDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D + E+ + EI KL +K S G +L L L Y D Sbjct: 122 VDLITDEQKEEKIKEIEEKLGKFDKIIFASGMYSFGISQLLEALDPYLEDGVKYYPDDMY 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYS---SCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 +D+ + EI REK+ L EIP+S + E+ E KKD + IYVER SQ Sbjct: 182 TDMSTYRIITEIVREKILLKTRDEIPHSVAIEIINVERKEGKKDKFDI---NIYVERDSQ 238 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GKNG+ +K I +EA+KEI E+L + ++L L+VKV+ +W Sbjct: 239 KGIIIGKNGKMLKEIGVEARKEIEELLGEKIYLGLWVKVKDNW 281 >gi|303278266|ref|XP_003058426.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459586|gb|EEH56881.1| predicted protein [Micromonas pusilla CCMP1545] Length = 322 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 154/299 (51%), Gaps = 26/299 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V +VG NAGKS L N G++VS V+ K TTR ++++E+Q++ +D PG+ Sbjct: 7 TVGIVGVPNAGKSQLTNTLAGSQVSAVSPKTNTTRIETLATITKRETQVILVDLPGVVGR 66 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL------- 133 ++ H+ + +WS D + +VD+HR+L +++ IA+ L Sbjct: 67 EHYRNGVHEKKVSSAWSAAADCDALVFIVDAHRQLSRPDPRVVRLIARARESLDAMKTEA 126 Query: 134 -------------ILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 L LNK+D +P +R+ A +KL + F +SA +G G D Sbjct: 127 EKLEGDGALRVPSFLALNKLDLFEPWERDRVKALARQLSKLHDFARVFPISAKRGKGTDA 186 Query: 178 VLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK 237 +L L P PW + Q++D E+ RE ++ LHKE+PY+ + ++WE + Sbjct: 187 LLRGLIEIAPTKPWAFDPTQVTDKTSIDQAIEVVRECVYQRLHKELPYNIVPIHDEWENR 246 Query: 238 KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 +DGS+ I Q + V+ K+I++G+ G I I + A+ + ++ ++ VHLIL V+V+K Sbjct: 247 RDGSVKIEQYLVVDNVGVKQIVVGRRGSTIGQIGIRARVLLEKMWDKRVHLILNVRVRK 305 >gi|291515778|emb|CBK64988.1| GTP-binding protein Era [Alistipes shahii WAL 8301] Length = 293 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 152/288 (52%), Gaps = 12/288 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V ++G N GKSTL+N VG K+SI+T K QTTR + GIVS ++ QIV+ DTPGI Sbjct: 3 RSGFVNIIGNPNVGKSTLMNALVGEKLSIITSKAQTTRHRIMGIVSGEDFQIVYSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ + AD++ V D+ + + + +++ I + ++++NKI Sbjct: 63 LKPSYKLQESMMKFVTGALTDADVILYVTDTVEQSERS-AEIVDSIRRSGIPTVVVINKI 121 Query: 141 DCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D PE L QAEI V SA + + + + S LP P Y Sbjct: 122 DLSTPEALEALVDKWQAEIPGAQV-----VPTSAKENFNIEGLFRTILSLLPEGPAFYPK 176 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D + F +EI REK+ KEIPY + E ++E+ I IYV R SQ Sbjct: 177 DTLTDKTLRFFASEIIREKILKFYDKEIPYCCEIEIESYKEEPTID-RIAATIYVARDSQ 235 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++G G+ +K + A++++ + L + V L LFVKV DW ++ + Sbjct: 236 KGILIGHKGEKLKRVGQTAREDMEQFLGKKVFLQLFVKVSDDWRNNER 283 >gi|254424176|ref|ZP_05037894.1| GTP-binding protein Era, putative [Synechococcus sp. PCC 7335] gi|196191665|gb|EDX86629.1| GTP-binding protein Era, putative [Synechococcus sp. PCC 7335] Length = 431 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 163/283 (57%), Gaps = 7/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V++VG N GKSTL+N VG K++I + QTTR+ ++GI++ ++QI+F+DTPGI Sbjct: 135 RSGFVSIVGRPNVGKSTLMNYLVGQKIAITSPVAQTTRNRLQGILTTPQAQIIFVDTPGI 194 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K++++ + I D+V VV++ + IA+ ++L +NK+ Sbjct: 195 HKPHHELGKVLVQNARVAIGSVDVVLFVVEATSAAGKGDLFVSNLIAQTKGPVVLGINKV 254 Query: 141 DCVKPERLLEQAEI--ANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D + PE + AEI + + + E + V SA G G +++ L + L P+ Y Sbjct: 255 DQL-PESGRKAAEIKHSYEALAAEHGWSVVKFSALTGEGIENLQTELVAKLEPGPYYYPP 313 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P E+ RE++ LH +E+P+S + EK EE K+ + ++ + VER SQ Sbjct: 314 DLVTDQPERFIMGELIREQILLHTREEVPHSVAIAIEKVEEDKNITRIL-ATVNVERKSQ 372 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K IS A++++ +++ V+L +FV+VQ+ W Sbjct: 373 KGILIGKGGLMMKAISTAAREQMQKLVAGKVYLEIFVRVQERW 415 >gi|119716151|ref|YP_923116.1| GTP-binding protein Era [Nocardioides sp. JS614] gi|226741224|sp|A1SHZ4|ERA_NOCSJ RecName: Full=GTPase Era gi|119536812|gb|ABL81429.1| GTP-binding protein Era [Nocardioides sp. JS614] Length = 313 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 102/298 (34%), Positives = 155/298 (52%), Gaps = 11/298 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q RSG V+ VG NAGKSTL N VG+KV I + K QTTR++VRGIV ++Q++ +D Sbjct: 9 QPAHRSGFVSFVGRPNAGKSTLTNALVGSKVVITSDKPQTTRTVVRGIVHRDDAQLILVD 68 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLIL 135 TPG+ + + + L +T+ D+V + + ++ ++ ++ E+AK + + + Sbjct: 69 TPGLHRPRTLLGERLNDLVKTTLAEVDVVAVCLPANEKVGPGDRFIVNEMAKIKRTTKVA 128 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKT-----FMVSATKGHGCDDVLNYLCSTLPLAP 190 I K D P+R+ E +L T VSA G + + + L LP P Sbjct: 129 IATKTDLASPDRIAEHLLDIARLGTETGTEWAEIVPVSAKSGDQVELLADLLVGLLPEGP 188 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW---EEKKDGSIL--IR 245 +Y +SD P AE+ RE L E+P+S VV E+ E + D L I Sbjct: 189 QLYPDGDLSDAPEEILAAELIREAALEGLRDELPHSVAVVVEEMGLREGRPDAKPLLDIH 248 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +YVER SQK I++G G ++ I A+ +I +L PV+L L VK+ KDW DP+ Sbjct: 249 ANVYVERDSQKGIIIGPKGARLRDIGTRARGQIEALLGTPVYLDLHVKIAKDWQRDPR 306 >gi|188994054|ref|YP_001928306.1| GTP-binding protein Era [Porphyromonas gingivalis ATCC 33277] gi|188593734|dbj|BAG32709.1| putative GTP-binding protein [Porphyromonas gingivalis ATCC 33277] Length = 299 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 155/278 (55%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V +VG N GKSTL+N VG ++SI+T K QTTR + GIV+ E QIV+ DTPG+ Sbjct: 9 RSGFVNIVGNPNVGKSTLMNLLVGERISIITSKAQTTRHRIMGIVNTPEMQIVYSDTPGV 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M S S + AD++ V D + N D L +++ ++L++NKI Sbjct: 69 LRPNYKLQQEMREFSESALGDADVLVYVTDVVEKADKN-ADFLARVSRMECPVLLVINKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E L + E ++ + +SAT + + S +P +P + D ++D Sbjct: 128 DLSNQEALEKLVEEWRNILPKAEIHPLSATNNFNVGLLQKRIESLIPPSPPYFEKDALTD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F EI REK+ L+ KEIPY++ VV E+++E+K I I+ +I VER SQK I++ Sbjct: 188 KPARFFVTEIIREKILLYYQKEIPYAAEVVVEEFKEEKT-IIRIKSLIIVERNSQKGIII 246 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G IK + A++++ + + L +FVKV+KDW Sbjct: 247 GPKGAAIKRVGSMARRDLERFFGKKIFLEIFVKVEKDW 284 >gi|19703615|ref|NP_603177.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|25008422|sp|Q8RGM1|ERA_FUSNN RecName: Full=GTPase Era gi|19713721|gb|AAL94476.1| GTP-binding protein era [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 296 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 159/283 (56%), Gaps = 8/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + M ++ +K DI+ ++D+ + + ++ I + S + IL++NK Sbjct: 62 HKPQHLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENSKKPRILLVNK 121 Query: 140 IDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D + E+ + EI KL +K S G +L L L Y D Sbjct: 122 VDLISDEQKEEKIKEIEEKLGKFDKIIFASGMYSFGISQLLEALDPYLEDGVKYYPDDMY 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYS---SCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 +D+ + EI REK+ L EIP+S + E+ E KKD + IYVER SQ Sbjct: 182 TDMSTYRIITEIVREKILLKTRDEIPHSVAIEIINVERKEGKKDKFDI---NIYVERDSQ 238 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK+G+ +K I +EA+KEI E+L + ++L L+VKV+ DW Sbjct: 239 KGIIIGKDGKMLKEIGVEARKEIEELLGEKIYLGLWVKVKDDW 281 >gi|24372927|ref|NP_716969.1| GTP-binding protein Era [Shewanella oneidensis MR-1] gi|24347063|gb|AAN54414.1|AE015579_3 GTP-binding protein Era [Shewanella oneidensis MR-1] Length = 339 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 159/288 (55%), Gaps = 7/288 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA++G N GKSTL+NR +G K+SI + K QTTR + GI ++ QIVF+DTPG+ Sbjct: 46 GMVAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPRQIVFIDTPGLHI 105 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 + + ++LM R + S++ +V VVD + ++ + L + +R + +L +N Sbjct: 106 EEQRAINRLMNRAAASSLADVSMVIFVVDGMTWTADDEMVLSKLRRGGEERKT--VLAIN 163 Query: 139 KIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D +K E L E K ++ +SA+KG +L +LP P+ + D Sbjct: 164 KVDNIKDKEALFPYLEDVAKKYPFDEILPISASKGTNVKRILELAAQSLPENPFFFPEDY 223 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D +EI REKL L E+PY + V E+++ ++G I +I VER QK+ Sbjct: 224 VTDRSQRFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQINALILVEREGQKR 283 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++G G+ I+TI+ +A+ ++ + + V L ++VKV+ W D + Sbjct: 284 MVIGSKGERIRTIATQARLDMETLFDNKVFLEVWVKVKSGWADDERAL 331 >gi|114775464|ref|ZP_01451032.1| GTP-binding protein Era [Mariprofundus ferrooxydans PV-1] gi|114553575|gb|EAU55956.1| GTP-binding protein Era [Mariprofundus ferrooxydans PV-1] Length = 301 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 161/287 (56%), Gaps = 8/287 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VAL+G N GKSTL+N + AKV+IVT K QTTR + GI ++ Q++F+DTPGI Sbjct: 7 RCGTVALLGRPNVGKSTLMNHIIRAKVAIVTPKPQTTRHRILGIYNDDARQLIFVDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL----ILI 136 ++ M+R+++ + AD++ ++ D L +L++ A RL I + Sbjct: 67 HKGDKQLNRNMVRIAYGAAEEADVLAIMQDVTCPLDRVTRELIERFA--DGRLKQPRIHV 124 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 LNK+D +K E LL + + +L ++ VSA +G + +L+ L LP P ++ Sbjct: 125 LNKVDAIKKEALLPRLAMMQQLDPGATAYIPVSARRGVQIETLLDQLTLLLPEQPPLHDP 184 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D +D AE RE++FL + +EIP+ + V E++EE GS+ I VI V Sbjct: 185 DWFTDQSQRQLAAEYVREQVFLAMQQEIPFQTAVDIERFEEHG-GSVEIDAVILVGSERH 243 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 K +++GK G+ +K I A+ + ++L+ +HL L+V+V DW + P Sbjct: 244 KPMVIGKGGERMKDIGTRARMGLEKLLDCRIHLNLWVRVDADWFNHP 290 >gi|291618445|ref|YP_003521187.1| Era [Pantoea ananatis LMG 20103] gi|291153475|gb|ADD78059.1| Era [Pantoea ananatis LMG 20103] gi|327394841|dbj|BAK12263.1| GTP-binding protein Era [Pantoea ananatis AJ13355] Length = 301 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 157/287 (54%), Gaps = 5/287 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 SG VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++DTPG+ Sbjct: 8 SGFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQAIYVDTPGLH 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + ++LM R + S+I +++ VVD R + +L ++ ++L +NK+ Sbjct: 68 MEEKRAINRLMNRAASSSIGDVELIIFVVDGTR-WTPDDEMVLNKLRDGKVPVLLAINKV 126 Query: 141 DCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D ++ + +L ++ ++ FI+ +SA G D + LP + + D I Sbjct: 127 DNIQDKSILLPHLQFLSQQMNFID-IVPISAETGKNVDTIAAIARKHLPESDHHFPEDYI 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKL L E+PYS V E++ G I +I VER QKK+ Sbjct: 186 TDRSQRFMASEIIREKLMRFLGAELPYSVTVEIEQFVSNARGGYDINGLILVEREGQKKM 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++G G IKTI +EA+K++ E+ + VHL L+VKV+ W D + Sbjct: 246 VIGNKGAKIKTIGIEARKDMEEMFDAKVHLELWVKVKSGWADDERAL 292 >gi|256845852|ref|ZP_05551310.1| GTP-binding protein Era [Fusobacterium sp. 3_1_36A2] gi|256719411|gb|EEU32966.1| GTP-binding protein Era [Fusobacterium sp. 3_1_36A2] Length = 298 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 164/291 (56%), Gaps = 23/291 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILIL 137 + + M ++ +K DI+ ++D+ + + +++ D + E AK+ + IL++ Sbjct: 62 HKPQHLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMSVMDRINENAKKKPK-ILLV 120 Query: 138 NKIDCVKPERLLEQAEIA-------NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK+D + E+ E+ + NK++F S G +L L L Sbjct: 121 NKVDLISDEQKEEKLKEIEEKLGEFNKIIF------ASGMYSFGISQLLEALDPYLEEGV 174 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVV---TEKWEEKKDGSILIRQV 247 Y D +D+ + EI REK+ L EIP+S V E+ E KKD + Sbjct: 175 KYYPDDMYTDMSTYRIITEIVREKILLKTRDEIPHSVAVEIINVERKEGKKDKFDI---N 231 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 IYVER SQK I++GK+G+ +K I +EA+KEI E+L + ++L L+VKV+ DW Sbjct: 232 IYVERDSQKGIIIGKDGKMLKEIGVEARKEIEELLGEKIYLGLWVKVKDDW 282 >gi|255525312|ref|ZP_05392252.1| GTP-binding protein Era [Clostridium carboxidivorans P7] gi|296188181|ref|ZP_06856573.1| GTP-binding protein Era [Clostridium carboxidivorans P7] gi|255510984|gb|EET87284.1| GTP-binding protein Era [Clostridium carboxidivorans P7] gi|296047307|gb|EFG86749.1| GTP-binding protein Era [Clostridium carboxidivorans P7] Length = 293 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 158/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + ++G N GKSTL+N +G K+SIV+ K QTTR+ ++ I++EK+ Q+VF+DTPGI Sbjct: 3 KSGFITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNNIQTILTEKDFQLVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++++ +IK D++ + + E+ +L+++ + + + L+LNKI Sbjct: 63 HKPKHKLGEFMVKIAQDSIKEVDLILFLTNPEDEIGKGDMYILEQLKECNVPVFLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ER+ + + +K+ + +SA KG D++ + + P Y D I+D Sbjct: 123 DENTQERVAKTLDNYSKVFSFAEIIPISALKGKNVDELKELMVKYMHEGPKYYPEDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AE REK L +E+P+ + V ++ + G I I E+ S K I++ Sbjct: 183 QQERFVVAETIREKALRLLSQEVPHGTAVEIISMKKDEKGMYHIDATILCEKDSHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNG +K IS A+++I + L+ V+L L+VKV+K+W Sbjct: 243 GKNGSMLKKISTYARQDIEKFLQTRVNLKLWVKVKKEW 280 >gi|268593249|ref|ZP_06127470.1| GTP-binding protein Era [Providencia rettgeri DSM 1131] gi|291311144|gb|EFE51597.1| GTP-binding protein Era [Providencia rettgeri DSM 1131] Length = 302 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 160/288 (55%), Gaps = 5/288 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E QI+++DTPG Sbjct: 6 SHCGFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDNYQIIYVDTPG 65 Query: 80 I-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + K + ++LM R + S+I ++V VV+ + +L +++ +IL +N Sbjct: 66 LHIEEKRAINRLMNRAASSSIGDVELVIFVVEG-TNWTADDEMVLTKLSSLRCPVILAIN 124 Query: 139 KIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V + +L + I+ K+ F++ +SA KG G D + + +P A + D Sbjct: 125 KIDNVTDKTILLPHISMISQKMNFLD-VVPISAEKGTGVDTIAKIVKQHIPEAIHHFPED 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 I+D +EI REKL L E+PYS V E+++ + G I +I VER QK Sbjct: 184 YITDRSQRFMASEIIREKLMRFLGDELPYSVTVEIEQFKVTEAGIYHINGLILVEREGQK 243 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 K+++G G +KTI EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 KMVIGNKGSKLKTIGTEARIDMERMFDNKVHLELWVKVKSGWADDERA 291 >gi|119774018|ref|YP_926758.1| GTP-binding protein Era [Shewanella amazonensis SB2B] gi|119766518|gb|ABL99088.1| GTP-binding protein Era [Shewanella amazonensis SB2B] Length = 332 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 163/288 (56%), Gaps = 7/288 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ + K+SI + K QTTR + GI +E +QIVF+DTPG+ Sbjct: 39 GMVAIVGRPNVGKSTLLNKLLKQKISITSRKPQTTRHRIMGIHTEGPNQIVFIDTPGLHI 98 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNK 139 K + ++LM R + S++ +V VVD E + +L ++ + + +L +NK Sbjct: 99 EEKRAINRLMNRAAASSLADVSMVIFVVDGM-EWTADDEMVLNKLRRGGEHRKTVLAINK 157 Query: 140 IDCVKPERLLEQA--EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D +K + L E++ K F + VSA +G + +L+ +LP + + + D Sbjct: 158 VDGIKEKEDLFPYLIEVSKKYPF-DDIVPVSAKQGSNVERLLDLARESLPESVFFFPEDY 216 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D +EI REKL L E+PY + V E+++ ++G I ++ VER QK+ Sbjct: 217 VTDRSQRFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQINALVLVERDGQKR 276 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++GK G+ I+TI+ EA+K++ + + V L ++VKV+ W D + Sbjct: 277 MVIGKKGERIRTIATEARKDMERLFDNKVFLEVWVKVKSGWADDERAL 324 >gi|294139710|ref|YP_003555688.1| GTP-binding protein Era [Shewanella violacea DSS12] gi|293326179|dbj|BAJ00910.1| GTP-binding protein Era [Shewanella violacea DSS12] Length = 335 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 159/287 (55%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI + E Q+VF+DTPG+ Sbjct: 42 GMVAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTVAERQVVFIDTPGLHM 101 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSS--RLILILN 138 K + ++LM R + S++ +V VVD + + DL L+++ R + +L +N Sbjct: 102 EEKRAINRLMNRAAASSLAEVSLVVFVVDGMTWTEDD--DLVLRKLQSRDDGRKTVLAVN 159 Query: 139 KIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D +K E L E +K ++ +SATKG +L+ +LP +P + D Sbjct: 160 KVDNIKNKEELFPYLEALSKKFPFDEILPISATKGTNVQRILDMSIESLPESPHFFPEDY 219 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D +EI REKL L E+PY V E+++ ++G I ++ VER +QK+ Sbjct: 220 VTDRSQKFMASEIVREKLMRFLGDELPYDCTVEIEQFKMMENGVYQINALVLVERETQKR 279 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +++G G IK IS A+ ++ + + V L ++VKV+ W D + Sbjct: 280 MVIGNKGDRIKKISSAARVDMEVMFDNKVFLEMWVKVKSGWADDERA 326 >gi|139439609|ref|ZP_01773022.1| Hypothetical protein COLAER_02049 [Collinsella aerofaciens ATCC 25986] gi|133774950|gb|EBA38770.1| Hypothetical protein COLAER_02049 [Collinsella aerofaciens ATCC 25986] Length = 356 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 150/286 (52%), Gaps = 1/286 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V+ RSG VALVG NAGKSTL+N G KV+I + QTTR +R +V+ Q+VF+ Sbjct: 59 VEPGFRSGFVALVGRPNAGKSTLLNACYGKKVAITSPVAQTTRRRMRAVVNRPGYQLVFV 118 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI KD + + + + D+V ++D+ + + + + + S+ +L Sbjct: 119 DTPGIHKPKDGLGSELNKSALFELNDVDVVAFLIDATKPIGRGDAWVAERVKNARSKKVL 178 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +L K D P +++EQ + A++L+ + + S+ K D + + LP P + Sbjct: 179 VLTKADEADPAQVMEQLKAAHELMEYDDEIVTSSVKNFNVDAFIETVAHFLPEGPRWFPE 238 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D +D AE REK+ EIP+S V+ + E+ K + + IYVER Q Sbjct: 239 DMGTDASDETLVAEFVREKVLRRTRDEIPHSVGVICDALEQTKK-VLRVHATIYVEREGQ 297 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ IK I ++A++++ I V L L VKV+ W D Sbjct: 298 KGIIIGKGGEMIKHIGIDARRDLERIFGTQVFLELDVKVKAGWRDD 343 >gi|237740467|ref|ZP_04570948.1| GTP binding protein [Fusobacterium sp. 2_1_31] gi|229422484|gb|EEO37531.1| GTP binding protein [Fusobacterium sp. 2_1_31] Length = 297 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 161/283 (56%), Gaps = 8/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + M ++ + +K D++ ++D+ + + ++ I + S++ IL++NK Sbjct: 62 HKPQHLLGEYMTNIAINILKDVDVILFLIDASKTIGTGDMFVMDRINENSNKPKILLVNK 121 Query: 140 IDCVKPERLLEQAEIANK-LVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D + E+ E+ + + L +K SA G +L L L Y D Sbjct: 122 VDLISDEQKEEKLKEIEEKLGKFDKIIFASAMYSFGIAQLLEALDPYLEEGVKYYPDDMY 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVV---TEKWEEKKDGSILIRQVIYVERPSQ 255 +D+ + EI REK+ L EIP+S V E+ E KKD IYVER SQ Sbjct: 182 TDMSTYRIITEIVREKILLKTRDEIPHSVAVEIIDVERKEGKKDK---FNINIYVERDSQ 238 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GKNG+ +K I +EA++EI ++L + ++L L+VKV+ DW Sbjct: 239 KGIIIGKNGKMLKDIGMEARQEIEDLLGEKIYLGLWVKVKDDW 281 >gi|15606987|ref|NP_214369.1| GTP-binding protein Era [Aquifex aeolicus VF5] gi|3913584|sp|O67800|ERA_AQUAE RecName: Full=GTPase Era gi|2984240|gb|AAC07768.1| GTP-binding protein Era [Aquifex aeolicus VF5] Length = 301 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 165/296 (55%), Gaps = 14/296 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPG 79 + G VA+VG N GKSTL+N +G KVSI++ K TTR V G+ + E+QI+FLDTPG Sbjct: 2 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG 61 Query: 80 IFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILI 136 I+ K D M+ ++ +++ AD++ ++D+ + ++ + K ++ +I++ Sbjct: 62 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 121 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NKID + P + L EI K + + +SA KG D+++ + LP ++ Sbjct: 122 INKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQVIY 249 D I+DLP+ AEI REK + +E+P S V K E K G ++I+ I Sbjct: 182 EDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAV---KINEIKPGDANPNMLVIKGEII 238 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 V+R + K I++GK GQ +K I A++E+ IL +PV+L L+VKV DW P+ Sbjct: 239 VDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYV 294 >gi|215482646|ref|YP_002324840.1| GTP-binding protein Era [Acinetobacter baumannii AB307-0294] gi|213986558|gb|ACJ56857.1| GTP-binding protein Era [Acinetobacter baumannii AB307-0294] Length = 301 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 162/294 (55%), Gaps = 14/294 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N +G K+SI + K QTTR + GI S ++ Q V++DTPG+ + Sbjct: 1 MAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 60 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + +K+M R + S ++ ++V V+D+H+ + N +L+++ +IL++NK D Sbjct: 61 VRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQ-NDDLVLEKLKNADMPVILVINKADTF 119 Query: 144 KPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 +R +L + KL+ + VSA +G + + + LP P +YS DQI+D Sbjct: 120 GDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRS 179 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKWEEKKDGSILIRQVIYVE 251 +EI REK+ L +E+PY V V EK K I I+V+ Sbjct: 180 ERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEATVNEKTGRLKPACTYIDATIFVD 239 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 RP QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV+ W D + Sbjct: 240 RPGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKVKGGWSDDERAL 293 >gi|251788699|ref|YP_003003420.1| GTP-binding protein Era [Dickeya zeae Ech1591] gi|247537320|gb|ACT05941.1| GTP-binding protein Era [Dickeya zeae Ech1591] Length = 301 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 168/297 (56%), Gaps = 15/297 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EEQTYCGFVAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRS 130 TPG+ K + ++LM R + S+I +++ VV+ E+ VN ++ ++ Sbjct: 63 TPGLHIEEKRAINRLMNRAASSSIGDVELIIFVVEGTHWTDDDEMVVN------KLREQK 116 Query: 131 SRLILILNKIDCVKPE-RLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + ++L +NK+D V + +LL + ++ K+ F++ +SA KG D + + + LP Sbjct: 117 APVLLAINKVDNVADKTKLLPHIQMLSEKMNFLD-VVPISAEKGTHVDTIASIVRKHLPQ 175 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 A + D I+D +EI REKL L +E+PYS V E++ + G I +I Sbjct: 176 AIHHFPEDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVANERGGYDINGLI 235 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA++++ ++ E VHL L+VKV+ W D + Sbjct: 236 LVEREGQKKMVIGNKGTKIKTIGIEARQDMEQMFEAKVHLELWVKVKSGWADDERAL 292 >gi|170725605|ref|YP_001759631.1| GTP-binding protein Era [Shewanella woodyi ATCC 51908] gi|169810952|gb|ACA85536.1| GTP-binding protein Era [Shewanella woodyi ATCC 51908] Length = 329 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 156/285 (54%), Gaps = 3/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G K+SI + K QTTR + GI ++ E Q+VF+DTPG+ Sbjct: 36 GMVAIVGRPNVGKSTLLNNLLGQKISITSKKPQTTRHRIMGIHTDAERQVVFIDTPGLHI 95 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 K + ++LM R + S++ +V VVD + L K ++ R +L +NK+ Sbjct: 96 EEKRAINRLMNRAAASSLAEVSLVIFVVDGMTWTDDDEMVLRKLQSRDDGRKTVLAVNKV 155 Query: 141 DCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K E L E +K ++ +SATKG +L+ ++P +P + D ++ Sbjct: 156 DNIKDKEELFPYLEELSKKFPFDEILPISATKGTNVQRILDMSVESVPESPHFFPEDYVT 215 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL L E+PY V E+++ ++G I ++ VER +QK+++ Sbjct: 216 DRSQKFMASEIVREKLMRFLGDELPYDCTVEIEQFKMMENGVYQINALVLVERETQKRMV 275 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +G G+ IK IS A+ ++ + + V L ++VKV+ W D + Sbjct: 276 IGNKGERIKKISSAARMDMEVLFDNKVFLEMWVKVKSGWADDERA 320 >gi|303239953|ref|ZP_07326475.1| GTP-binding protein Era [Acetivibrio cellulolyticus CD2] gi|302592432|gb|EFL62158.1| GTP-binding protein Era [Acetivibrio cellulolyticus CD2] Length = 297 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 91/281 (32%), Positives = 156/281 (55%), Gaps = 4/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +++VG N GKSTL+N G K++I++ K QTTR+ ++ +++ E QIVF+DTPGI Sbjct: 4 KSGFISIVGRPNVGKSTLLNNITGEKIAIMSDKPQTTRNTIKAVITGDEHQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 K+ M+ ++ T+ D+V +V++ LK DL ++++ S++ L++N Sbjct: 64 HKPKNKLGDFMVNIAVETLNEVDVVLFLVEAQN-LKPGPGDLFIVEQLKNVKSKVFLVIN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + +LL L+ E +SA K D +++ + LP P + D + Sbjct: 123 KIDLIDKSQLLPLISAYKDLMNFEALIPISALKDEKQDPLISEILKVLPEGPKYFPEDMM 182 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D P AE+ REK+ + E+P+ V ++++ D I+ I+ IY E+ + K Sbjct: 183 TDQPEKLIAAELIREKILHLVSDEVPHGVGVEVISFKQRDDKDIINIQANIYCEKDTHKG 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I ++ EI +L V L L+VKV+ DW Sbjct: 243 ILIGKGGSMLKRIGSLSRTEIENLLGIQVFLELWVKVKPDW 283 >gi|127511988|ref|YP_001093185.1| GTP-binding protein Era [Shewanella loihica PV-4] gi|126637283|gb|ABO22926.1| GTP-binding protein Era [Shewanella loihica PV-4] Length = 331 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 162/290 (55%), Gaps = 11/290 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI ++ Q+VF+DTPG+ Sbjct: 38 GMVAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGPRQVVFIDTPGLHI 97 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSS--RLILIL 137 K + ++LM R + S++ +V VVD L D +LK++ R + IL + Sbjct: 98 EEKRAINRLMNRAASSSLAEVSLVVFVVDG---LNWTADDEMVLKKLHNRDDGRKTILAI 154 Query: 138 NKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK+D +K + L +A K F ++ +SAT G ++ ++P +P + Sbjct: 155 NKVDNIKDKEALFPHLQTLAAKFEF-DEILPISATHGTNVQRIMELALESVPESPHYFPE 213 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D +EI REKL L E+PY + V E+++ ++G I +I VER +Q Sbjct: 214 DYVTDRSQKFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQINALILVERETQ 273 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K++++G G+ I+TI+ +A++++ + + V L ++VKV+ W D + Sbjct: 274 KRMVIGNKGERIRTIATQARQDMEVLFDNKVFLEVWVKVKSGWADDERAL 323 >gi|256599907|pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 165/296 (55%), Gaps = 14/296 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPG 79 + G VA+VG N GKSTL+N +G KVSI++ K TTR V G+ + E+QI+FLDTPG Sbjct: 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG 68 Query: 80 IFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILI 136 I+ K D M+ ++ +++ AD++ ++D+ + ++ + K ++ +I++ Sbjct: 69 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NKID + P + L EI K + + +SA KG D+++ + LP ++ Sbjct: 129 INKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFP 188 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQVIY 249 D I+DLP+ AEI REK + +E+P S V K E K G ++I+ I Sbjct: 189 EDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAV---KINEIKPGDANPNMLVIKGEII 245 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 V+R + K I++GK GQ +K I A++E+ IL +PV+L L+VKV DW P+ Sbjct: 246 VDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYV 301 >gi|88858203|ref|ZP_01132845.1| GTP-binding protein era [Pseudoalteromonas tunicata D2] gi|88819820|gb|EAR29633.1| GTP-binding protein era [Pseudoalteromonas tunicata D2] Length = 299 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 162/286 (56%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKST++N VG KVSI + K QTTR + GI +E + Q V++DTPG+ Sbjct: 8 GMIAIVGRPNVGKSTILNEIVGQKVSITSRKAQTTRHRIMGIHTEGDYQAVYVDTPGLHI 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 K + ++LM R + S+I +++ VV+ + D++ K++ R ++L++NK+ Sbjct: 68 EEKRAINRLMNRAAASSISDVELIIFVVEGTHWTADD--DMVLHKVKQTGRPVLLVINKV 125 Query: 141 DCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D VK E L + + VSAT+ D + + + L + +++ D ++ Sbjct: 126 DQVKEKEELFPHLQWLGEQADFVAILPVSATQAKNIDLIKDQVRKYLQPSEFIFPEDYVT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AEI REKL + +E+PYS V E+++ +++G I +I VER SQK+++ Sbjct: 186 DRSTRFLAAEIVREKLMRFMGEELPYSVTVEIEQFKWQENGVWHINALILVERESQKRMV 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G G+ +K I EA+K++ E+L+ V L L+VKV+ W D + Sbjct: 246 IGNKGEKLKVIGREARKDMEEMLDNKVFLELWVKVKSGWADDERAL 291 >gi|226360374|ref|YP_002778152.1| GTP-binding protein Era [Rhodococcus opacus B4] gi|226238859|dbj|BAH49207.1| GTP-binding protein Era [Rhodococcus opacus B4] Length = 305 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 160/293 (54%), Gaps = 11/293 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG+K++I + + QTTR +RGIV +Q++ +DTPG+ Sbjct: 7 RSGFVCFVGRPNTGKSTLTNALVGSKIAITSSRPQTTRHTIRGIVHRDHAQLILVDTPGL 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L T D++CL + + ++ I +++IA +++ L+ I+ Sbjct: 67 HRPRTLLGQRLNDLVRDTYSEVDVICLCIPADEKIGPGDRWIVQQVRQIAPKTT-LVGIV 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V + + +Q ++L+ E + VSA G + +++ L S + P Y Sbjct: 126 TKIDKVSKDMVGQQLLAVSQLLGPETDVVPVSAASGEQVEVLVDVLASKMEEGPAFYPDG 185 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE-----KWEEKKDGSIL-IRQVIYV 250 +++D P AE+ RE L E+P+S VV E + +K G +L + ++YV Sbjct: 186 ELTDEPEETLMAELIREAALEGLGDELPHSLAVVIEEIIPREGRTEKQGELLDVHALLYV 245 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ERPSQK I++GK G ++ + +A+ +I ++L + L L VKV KDW DPK Sbjct: 246 ERPSQKGIVIGKGGARLREVGTKARLQIEKLLGTKIFLELHVKVAKDWQRDPK 298 >gi|229163245|ref|ZP_04291200.1| GTP-binding protein era [Bacillus cereus R309803] gi|228620308|gb|EEK77179.1| GTP-binding protein era [Bacillus cereus R309803] Length = 266 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 146/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID + PE+LLE + KL + +SA Sbjct: 61 NAVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ D ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VERPSQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERPSQKGIIIGKQGKMLKEVGKRARFDIESLLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|194397601|ref|YP_002037604.1| GTP-binding protein Era [Streptococcus pneumoniae G54] gi|226741240|sp|B5E488|ERA_STRP4 RecName: Full=GTPase Era gi|194357268|gb|ACF55716.1| GTP-binding protein Era homolog [Streptococcus pneumoniae G54] Length = 299 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 101/282 (35%), Positives = 162/282 (57%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G ++I+ K TTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQXIAIMXDKAXTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLDEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER SQK Sbjct: 182 TDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 241 GIIIGKGGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 282 >gi|84496849|ref|ZP_00995703.1| GTP-binding protein Era [Janibacter sp. HTCC2649] gi|84383617|gb|EAP99498.1| GTP-binding protein Era [Janibacter sp. HTCC2649] Length = 317 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 157/292 (53%), Gaps = 10/292 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G L+G NAGKSTL N VG KV+I + K QTTR +RGIV+ SQIV +DTPG+ Sbjct: 19 AGFACLIGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVTSPMSQIVLVDTPGLH 78 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK----RSSRLILIL 137 + + + L T+ + D+V + + + + + +E+A+ + + +I + Sbjct: 79 KPRTLLGERLNDLVRETLLNVDVVGFCLPADQRIGPGDQWIARELAELRQAKRTPIIALA 138 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSAD 196 K D V +RL E ++L + SATKG D V + LP +P +Y D Sbjct: 139 TKSDKVDRQRLAEHLISIDQLGEWAEIVPCSATKGDQVDTVAAVIAKYLPPSPGPLYPDD 198 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW---EEKKDGSIL--IRQVIYVE 251 ++D P AE+ RE + E+P+S VV E+ E++ +G + +R ++VE Sbjct: 199 VLTDEPHAIMIAELVREAALEGVRDELPHSLAVVVEEMLPREDRPEGKPMMDVRVNVFVE 258 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 R SQK I++G+ G ++ + A++ I ++L Q VHL L VKV KDW DPK Sbjct: 259 RSSQKAIIIGRGGSRLREVGTNAREGIEKLLGQRVHLDLHVKVAKDWQRDPK 310 >gi|242240202|ref|YP_002988383.1| GTP-binding protein Era [Dickeya dadantii Ech703] gi|242132259|gb|ACS86561.1| GTP-binding protein Era [Dickeya dadantii Ech703] Length = 301 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 165/297 (55%), Gaps = 15/297 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EEQTYCGFVAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRS 130 TPG+ K + ++LM R + S+I +++ VV+ E+ VN ++ ++ Sbjct: 63 TPGLHIEEKRAINRLMNRAASSSIGDVELIVFVVEGTHWTDDDEMVVN------KLREQK 116 Query: 131 SRLILILNKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + ++L +NK+D + + LL ++ K+ F++ +SA KG D V + + LP Sbjct: 117 TPVVLAINKVDNITDKSLLLPHIQMLSEKMKFLD-VVPISAEKGTNVDAVASIVRKHLPQ 175 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 + + D I+D +EI REKL L +E+PYS V E++ + G I +I Sbjct: 176 SLHHFPEDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVANERGGYDINGLI 235 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA++++ + E VHL L+VKV+ W D + Sbjct: 236 LVEREGQKKMVIGNKGAKIKTIGIEARQDMERMFEARVHLELWVKVKSGWADDERAL 292 >gi|229031948|ref|ZP_04187935.1| GTP-binding protein era [Bacillus cereus AH1271] gi|228729412|gb|EEL80402.1| GTP-binding protein era [Bacillus cereus AH1271] Length = 266 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 146/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID + PE+LLE + KL + +SA Sbjct: 61 NAVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHDFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ D ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VERPSQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERPSQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|77359684|ref|YP_339259.1| GTP-binding protein Era [Pseudoalteromonas haloplanktis TAC125] gi|76874595|emb|CAI85816.1| GTP-binding protein era [Pseudoalteromonas haloplanktis TAC125] Length = 310 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 166/287 (57%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ + KVSI + K QTTR + GI +E + Q V++DTPG+ Sbjct: 19 GMIAIVGRPNVGKSTLLNKIIEQKVSITSRKPQTTRHRIMGIHTEGKHQAVYVDTPGLHV 78 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + ++LM R + S+I +++ VV+ +H ++ +L ++++ ++L++NKI Sbjct: 79 EEKRAINRLMNRAASSSIGDVELIIFVVEGTHWNADDDM--VLNKVSQSGKPVLLVINKI 136 Query: 141 DCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D VK L+ + +K FI VSA +G D + + L + + + D + Sbjct: 137 DLVKDRDLVLPHMKWLGDKFDFI-GIMPVSAEQGKNIDLIKAEVTKRLQPSEFYFPEDYV 195 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D M AE REKL + +E+PYS V E+++ +++G I +I VER +QK++ Sbjct: 196 TDRSMRFMAAETIREKLMRFMGEELPYSVTVEIEQFKWQENGIWHINGLILVERETQKRM 255 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++G G+ +KTI EA+K++ E+L+ V L L+VKV+ W D + Sbjct: 256 VIGNKGEKLKTIGREARKDLEEMLDNKVFLELWVKVKSGWADDERAL 302 >gi|307132117|ref|YP_003884133.1| membrane-associated, 16S rRNA-binding GTPase [Dickeya dadantii 3937] gi|306529646|gb|ADM99576.1| membrane-associated, 16S rRNA-binding GTPase [Dickeya dadantii 3937] Length = 301 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 166/297 (55%), Gaps = 15/297 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++D Sbjct: 3 EEQTYCGFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRS 130 TPG+ K + ++LM R + S+I +++ VV+ E+ VN ++ + Sbjct: 63 TPGLHIEEKRAINRLMNRAASSSIGDVELIIFVVEGTHWTDDDEMVVN------KLRDQK 116 Query: 131 SRLILILNKIDCVKPE-RLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + ++L +NK+D V + +LL + ++ K+ F++ +SA KG D + + LP Sbjct: 117 TPVLLAINKVDNVADKTKLLPHIQMLSEKMNFLD-VVPISAEKGTNVDTIAAIVRKHLPQ 175 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 A + D I+D +EI REKL L +E+PYS V E++ + G I +I Sbjct: 176 AIHHFPEDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVTNERGGYDINGLI 235 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA++++ ++ E VHL L+VKV+ W D + Sbjct: 236 LVEREGQKKMVIGNKGAKIKTIGIEARQDMEQMFEAKVHLELWVKVKSGWADDERAL 292 >gi|299769158|ref|YP_003731184.1| GTP-binding protein Era [Acinetobacter sp. DR1] gi|298699246|gb|ADI89811.1| GTP-binding protein Era [Acinetobacter sp. DR1] Length = 342 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 100/311 (32%), Positives = 169/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+++ + N +L+++ Sbjct: 85 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQ-NDDLVLEKL 143 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D + +R +L + KL+ + VSA +G + + + Sbjct: 144 KNAEMPVILVINKADTFEDKRDILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKY 203 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 204 LPYQAPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEETVNEKT 263 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+R QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 264 GRLKPACTYIDATIFVDRAGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKV 323 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 324 KGGWSDDERAL 334 >gi|305666362|ref|YP_003862649.1| putative GTP-binding protein [Maribacter sp. HTCC2170] gi|88708354|gb|EAR00591.1| putative GTP-binding protein [Maribacter sp. HTCC2170] Length = 296 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 148/278 (53%), Gaps = 2/278 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G V ++G N GKSTL+N FVG K+SI+T K QTTR + GIV+ + Q++ DTPGI Sbjct: 5 KAGFVNIIGNPNVGKSTLMNAFVGEKLSIITSKAQTTRHRILGIVNGDDFQVILSDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 M+ S + AD++ +V+ E + ++I ++L+LNKI Sbjct: 65 IKPAYELQSSMMDFVKSAFEDADVLLYMVEIG-EKALKDEKFFEKIKNSEIPVLLLLNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E L EQ + + + + VSA V + LP +P Y DQ++D Sbjct: 124 DASTQEILEEQIQYWQEQLPTVEIHPVSALNNFNVKGVFERILELLPTSPAYYPKDQLTD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P F E REK+ + KEIPY + + + + + I IR VI VER SQK I++ Sbjct: 184 KPERFFVNETIREKILMFYKKEIPY-AVEIETEEFFEDEDIIRIRAVIMVERDSQKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G +K + +EA+K++ + + +HL L+VKV K+W Sbjct: 243 GHKGNALKRVGVEARKDLEKFFGKQIHLELYVKVNKNW 280 >gi|59712693|ref|YP_205469.1| GTP-binding protein Era [Vibrio fischeri ES114] gi|59480794|gb|AAW86581.1| membrane-associated, 16S rRNA-binding GTPase [Vibrio fischeri ES114] Length = 321 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/303 (33%), Positives = 169/303 (55%), Gaps = 8/303 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F +E K V DN G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ ++ Sbjct: 13 FASEKKSEVSDNQHCGFIAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIMGVDTD 72 Query: 68 KESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + Q +++DTPG+ K + ++LM R + S++ ++V +VD + +L ++ Sbjct: 73 GDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVLFLVDG-THWTPDDEMVLNKL 131 Query: 127 AKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 K +L++NK+D VK ++ + E+ K+ F++ +SA G D V + Sbjct: 132 KKSEFPTVLLVNKVDNVKDKKDVMTHLQEMTEKMDFVD-VVPISAKTGSNVDVVHKLVRE 190 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSI 242 LP A + + ++D +EI REKL +E+PYS V E+++ K DG Sbjct: 191 YLPKAVHHFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIERFDYNPKMDG-F 249 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I +I VER QKK+++GKNG+ IKTI EA+ ++ + ++ V+L L+VKV+ W D Sbjct: 250 HINGLILVERHGQKKMVIGKNGEKIKTIGREARIDMEGLFDRKVYLELWVKVKSGWADDE 309 Query: 303 KCC 305 + Sbjct: 310 RAL 312 >gi|256384053|gb|ACU78623.1| GTP-binding protein Era [Mycoplasma mycoides subsp. capri str. GM12] gi|256384885|gb|ACU79454.1| GTP-binding protein Era [Mycoplasma mycoides subsp. capri str. GM12] gi|296456013|gb|ADH22248.1| GTP-binding protein Era [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 301 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 163/287 (56%), Gaps = 4/287 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDT 77 N +SG V+++G N GKSTL+N+ +G K+SIVT+K QTTR+ +RGI+++K+ QIVF+DT Sbjct: 3 NFKSGFVSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ +K K + + + K D++ + S + N LLK+I IL++ Sbjct: 63 PGVHTSKKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLFLLKQIENLDVFKILVI 122 Query: 138 NKIDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSA 195 K D V E+L+ +A E ++ ++ + S+ + +L + + L + Y Sbjct: 123 TKADSVTKEQLILKANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSDNDYQFYDD 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI RE + L +E+P+S V+ E E+ + I I I VER SQ Sbjct: 183 DILTDQSDRFMIKEIIRENILLKTGQEVPHSVAVLVEHLEQ-NENEINISCAIIVERQSQ 241 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 K I++GKNG I I ++KK+I + ++ ++L LFVKVQ++W + P Sbjct: 242 KSIIIGKNGVKISDIRYKSKKQIQALFKKRINLELFVKVQENWRNSP 288 >gi|254819385|ref|ZP_05224386.1| GTP-binding protein Era [Mycobacterium intracellulare ATCC 13950] Length = 299 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 5/288 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V LVG N GKSTL N VG KV+I + + QTTR +RGIV + QI+ +DTPG+ Sbjct: 5 RSGFVCLVGRPNTGKSTLTNALVGTKVAITSKRPQTTRHTIRGIVHRDDFQIILVDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 + K + L T D++ L + + + ++++I + + L+ I+ Sbjct: 65 HRPRTLLGKRLNDLVRDTYAEVDVIGLCIPADEAIGPGDRWIVEQIRATAPKATLVAIVT 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID +R+ Q + LV + + VSA G D +++ L + LP P Y + Sbjct: 125 KIDKAPKDRVAAQLVAVSALVGEQAEIVPVSAVAGTQMDVLIDVLAAALPPGPAYYPDGE 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQ 255 ++D P AE+ RE + E+P+S VV ++ E +D I + ++YVER SQ Sbjct: 185 LTDEPEEVLMAELIREAALEGVRDELPHSLAVVIDEVNPREDRDDLIDVHALLYVERDSQ 244 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++GK G ++ + A+ +I ++L V+L L VKV K+W DPK Sbjct: 245 KGIIIGKGGARLRDVGTAARAQIEKLLGTKVYLDLRVKVAKNWQSDPK 292 >gi|295396069|ref|ZP_06806252.1| GTP-binding protein Era [Brevibacterium mcbrellneri ATCC 49030] gi|294971010|gb|EFG46902.1| GTP-binding protein Era [Brevibacterium mcbrellneri ATCC 49030] Length = 311 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 158/307 (51%), Gaps = 13/307 (4%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 ++ F E V + R+G VG N GKSTL N VG KV+I ++K QTTR +RG+V Sbjct: 1 MSLFRE----VPSDFRAGFACFVGRPNTGKSTLTNALVGTKVAITSNKPQTTRHTIRGVV 56 Query: 66 SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDL 122 Q++ +DTPG+ + + L ST+ D++ + ++ ++ I + Sbjct: 57 HRDNHQLIVVDTPGLHRPRTLLGSRLNDLVASTLAEVDVIGFCLPANEKIGPGDRYIAEQ 116 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L+ IA+++ ++ I+ K D V +++E N+L + VSA G D V L Sbjct: 117 LEMIARKTP-VVAIVTKTDTVPKGQVVEALTAVNELGDFAEVVPVSAVDGFQVDTVDQVL 175 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS- 241 LP +P +Y I+D P AE+ RE + +E+P+S V E+ +++D Sbjct: 176 AKYLPESPPLYPDGDITDEPESVLIAELVREAALEGIREELPHSLAVQVEEMIQREDRPE 235 Query: 242 ----ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKD 297 + + +YVER SQK I++G+ G +K I +A++ I +L PV L L VKV KD Sbjct: 236 DKPLVDVHVNLYVERDSQKAIIIGRKGARLKQIGSQARQGIEALLGTPVFLSLHVKVAKD 295 Query: 298 WGHDPKC 304 W DPK Sbjct: 296 WQRDPKA 302 >gi|229086869|ref|ZP_04219029.1| GTP-binding protein era [Bacillus cereus Rock3-44] gi|228696444|gb|EEL49269.1| GTP-binding protein era [Bacillus cereus Rock3-44] Length = 266 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 146/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID V PE+LLE + KL + +SA Sbjct: 61 NAAEGFGRGEEFIIEKLKETKQPVFLVINKIDQVHPEQLLELIDQYRKLHEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ + ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVEALIGAIKKYLPEGPQYYPENQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ + I VERPSQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYVNATIIVERPSQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|228987550|ref|ZP_04147669.1| GTP-binding protein era [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157914|ref|ZP_04285988.1| GTP-binding protein era [Bacillus cereus ATCC 4342] gi|228625573|gb|EEK82326.1| GTP-binding protein era [Bacillus cereus ATCC 4342] gi|228772282|gb|EEM20729.1| GTP-binding protein era [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 266 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 146/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID V PE+LLE + KL + +SA Sbjct: 61 NAVEGFGRGEEFIIEKLKETKQPVFLVINKIDQVHPEQLLELIDQYRKLHDFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ + ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVESLIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VERPSQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERPSQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|295099666|emb|CBK88755.1| GTP-binding protein Era [Eubacterium cylindroides T2-87] Length = 300 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 167/280 (59%), Gaps = 1/280 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG +A+VG NAGKSTL+N + KV+I++ K TTR+ + GI++ +++Q VF+DTP Sbjct: 2 NYRSGFIAIVGRPNAGKSTLMNALLKEKVAIMSDKPNTTRNNIAGILTLEDAQYVFVDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI + +++ + +++ ++ D++ ++D + +L I + +ILI+N Sbjct: 62 GIHKPRQQLGRVLNKNAYTAMEDCDVIGWIIDGTQSFGSGDEFILNRIEQLKKPVILIVN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D VK E+LLE ++ +SA K + +++L+ LP +Y ++ Sbjct: 122 KVDMVKKEKLLETLLGWQDRYNFDQIVPISALKENNLNELLDVFREYLPEGGMLYPSEMK 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD + EI REK+ +EIP+S V+ E E+++ I ++ +I V+R SQK I Sbjct: 182 SDHDINFQICEIIREKILFKTREEIPHSVAVLLENKVEEEN-KIFMQAMIVVDRDSQKGI 240 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G+ I++I L A+KE+ E L++ V L L+V+V+K+W Sbjct: 241 LIGKQGKMIRSIRLAAQKELKEKLKKNVELELYVRVEKNW 280 >gi|78188547|ref|YP_378885.1| GTP-binding protein Era [Chlorobium chlorochromatii CaD3] gi|78170746|gb|ABB27842.1| GTP-binding protein Era [Chlorobium chlorochromatii CaD3] Length = 305 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 106/290 (36%), Positives = 155/290 (53%), Gaps = 17/290 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG ++G NAGKSTL+N + K+SIVT K QTTR + GI + + QI+FLDTPGI Sbjct: 8 SGFAMIIGQPNAGKSTLLNALLDFKLSIVTPKPQTTRKKITGIYNSERCQIIFLDTPGIL 67 Query: 82 NAKDSYHKLMIRLSWSTIKHAD--IVCLVVDSHREL--KVNIHDLLKE-IAKRSSRLILI 136 + H+ M+ + ST+ AD I L EL + +L E I ++ + Sbjct: 68 KPRQKLHESMLGVVRSTVTDADVLIALLPYTGTAELFDRSFAAELFTEWILPSGKPVVAV 127 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 LNK D E+ + A V+ + VSA K +++ L LPL + Sbjct: 128 LNKSDLAS----QEEQKAAEAFVWEQWKPTNVLSVSALKRKNLTPLISALYPFLPLTEPL 183 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI----LIRQVI 248 Y + +S P F +E+ REK+F+ EIPYS+ VV +++ E+ D IR I Sbjct: 184 YPDEALSTAPERFFVSELIREKIFMLYGAEIPYSTEVVVDEFREQHDDDPSRKEFIRCSI 243 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VER +QK+I++GK G +K + A+K I E+L +PV+L LFVKV+ DW Sbjct: 244 VVERDTQKQIIIGKGGAALKKLGQLARKAIEEMLGRPVYLELFVKVRPDW 293 >gi|34764123|ref|ZP_00144997.1| GTP binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886109|gb|EAA23411.1| GTP binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 298 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 162/291 (55%), Gaps = 23/291 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + M ++ +K DI+ ++D+ + + + D + E AK+ + IL++ Sbjct: 62 HKPQHLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPK-ILLV 120 Query: 138 NKIDCVKPERLLEQAEIA-------NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK+D + E+ E+ + NK++F S G +L L L Sbjct: 121 NKVDLISDEQKEEKLKEIEEKLGEFNKIIF------ASGMYSFGISKLLEALDPYLEEGV 174 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVV---TEKWEEKKDGSILIRQV 247 Y D +D+ + EI REK+ L EIP+S V E+ E KKD + Sbjct: 175 KYYPDDMYTDMSTYRIITEIVREKILLKTRDEIPHSVAVEIINVERKEGKKDKFDI---N 231 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 IYVER SQK I++GK+G+ +K I +EA+KEI E+L + ++L L+VKV+ DW Sbjct: 232 IYVERDSQKGIIIGKDGKMLKEIGVEARKEIEELLGEKIYLGLWVKVKDDW 282 >gi|218247339|ref|YP_002372710.1| GTP-binding protein Era [Cyanothece sp. PCC 8801] gi|226741204|sp|B7K414|ERA_CYAP8 RecName: Full=GTPase Era gi|218167817|gb|ACK66554.1| GTP-binding protein Era [Cyanothece sp. PCC 8801] Length = 314 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 156/284 (54%), Gaps = 12/284 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N+ VG K++I + QTTR+ +RGI++ +E+QI+F+DTPGI Sbjct: 21 KSGFVGIIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVDTPGI 80 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K++++ + + I DI+ +VVDS E +++ + + +IL LNK Sbjct: 81 HKPHHQLGKILVQNAEAAINAVDIILVVVDSSIEAGGGDRYIVELLENTETPVILGLNKS 140 Query: 141 DCVKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D +P+ Q + LV + SA G G D++ L + L P+ Y D Sbjct: 141 DQ-QPQNY--QPIDESYLVLAQAHNWPVIKFSALTGEGLDNLQKTLINLLEPGPYYYPPD 197 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR--QVIYVERPS 254 ++D P E+ RE++ +EIP+S +V EK EE L R I VER S Sbjct: 198 LVTDQPERFIMGELIREQILQQTRQEIPHSVAIVIEKVEETPT---LTRVFAAINVERDS 254 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G +K I A++++ +++ V+L LFVKV+ W Sbjct: 255 QKGIIIGKKGAMLKAIGTAAREQMQKLITGEVYLQLFVKVEPQW 298 >gi|261820520|ref|YP_003258626.1| GTP-binding protein Era [Pectobacterium wasabiae WPP163] gi|261604533|gb|ACX87019.1| GTP-binding protein Era [Pectobacterium wasabiae WPP163] Length = 301 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 159/287 (55%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++LM R + S+I +++ VV+ N D +L ++ + ++L +NK Sbjct: 69 EEKRAINRLMNRAASSSIGDVELIIFVVEG---THWNDDDDMVLNKLRDQKLPVLLAINK 125 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D V + +LL + ++ + +SA KG D + + + LP A + D I Sbjct: 126 VDNVTDKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIASIVRKHLPQATHHFPEDYI 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKL L +E+PYS V E++ + G I +I VER QKK+ Sbjct: 186 TDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVTNERGGYDINGLILVEREGQKKM 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++G G IKTI +E+++++ E+ E VHL L+VKV+ W D + Sbjct: 246 VIGNKGAKIKTIGIESRQDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|228993042|ref|ZP_04152965.1| GTP-binding protein era [Bacillus pseudomycoides DSM 12442] gi|228999092|ref|ZP_04158674.1| GTP-binding protein era [Bacillus mycoides Rock3-17] gi|229006640|ref|ZP_04164274.1| GTP-binding protein era [Bacillus mycoides Rock1-4] gi|228754501|gb|EEM03912.1| GTP-binding protein era [Bacillus mycoides Rock1-4] gi|228760709|gb|EEM09673.1| GTP-binding protein era [Bacillus mycoides Rock3-17] gi|228766690|gb|EEM15330.1| GTP-binding protein era [Bacillus pseudomycoides DSM 12442] Length = 266 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 146/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID V PE+LLE + KL + +SA Sbjct: 61 NAAEGFGRGEEFIIEKLQETKQPVFLVINKIDQVHPEQLLELIDQYRKLHEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ + ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVEALIGAIKKYLPEGPQYYPDNQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ + I VERPSQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYVNATIIVERPSQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|227328580|ref|ZP_03832604.1| GTP-binding protein Era [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 301 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 159/287 (55%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++LM R + S+I +++ VV+ N D +L ++ + ++L +NK Sbjct: 69 EEKRAINRLMNRAASSSIGDVELIIFVVEG---THWNDDDEMVLNKLRDQKLPVLLAINK 125 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D V + +LL + ++ + +SA KG D + + + LP A + D I Sbjct: 126 VDNVTDKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIASIVRKHLPQATHHFPEDYI 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKL L +E+PYS V E++ + G I +I VER QKK+ Sbjct: 186 TDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVTNERGGYDINGLILVEREGQKKM 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++G G IKTI +E+++++ E+ E VHL L+VKV+ W D + Sbjct: 246 VIGNKGAKIKTIGIESRQDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|218297237|ref|ZP_03497893.1| GTP-binding protein Era [Thermus aquaticus Y51MC23] gi|218242430|gb|EED08970.1| GTP-binding protein Era [Thermus aquaticus Y51MC23] Length = 301 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 161/295 (54%), Gaps = 9/295 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++ + SG VA+VG N GKSTL+N +G KV+ ++ + QTTR +RGI++E QIVF+ Sbjct: 1 MEEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVN--IHDLLKEIAKRSSR 132 DTPG+ D+ + M + + + + V VVD H + + LK + + Sbjct: 61 DTPGLHKPMDALGEFMDQEVYEALADVNTVVWVVDLRHPPTPEDELVAKALKPLVGKVP- 119 Query: 133 LILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ++L+ NK+D K PE L+ + L+ + M+SA + L + +P P+ Sbjct: 120 ILLVGNKLDEAKYPEEALKAY---HALLPEAEPRMLSALDEKQVAGLKAELLALMPEGPF 176 Query: 192 VYSADQI-SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 Y D SD + AEI RE+ L E+PY+ E+ E+++G + I+ V+YV Sbjct: 177 YYPEDHAKSDQTFGEWVAEIVREEAMKRLWHEVPYAIATKVEEVAERENGVLYIKVVVYV 236 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ERPSQK I++G+ G+ +K I A+K++ L + V+L L VKV DW DP+ Sbjct: 237 ERPSQKGIVIGEGGKKLKEIGQAARKQLEVFLNRKVYLDLEVKVYPDWRKDPEAL 291 >gi|85059764|ref|YP_455466.1| GTP-binding protein Era [Sodalis glossinidius str. 'morsitans'] gi|84780284|dbj|BAE75061.1| GTP-binding protein [Sodalis glossinidius str. 'morsitans'] Length = 301 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 157/290 (54%), Gaps = 15/290 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+F+G KVSI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQFLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVN-IHDLLKEIAKRSSRLIL 135 K + ++LM R + S+I ++V VV+ E+ VN +HD+ + ++L Sbjct: 69 EEKRAINRLMNRAASSSICDVELVIFVVEGTHWTPDDEMVVNKLHDV-------NCPVVL 121 Query: 136 ILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V E+LL + ++ + + A G + + + LP A + Sbjct: 122 AINKVDNVTDKEQLLPHMQFLSQQISFHHIVPICAENGMNVETLAGIVRKALPEAVHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L E+PYS V E++ G I +I VER Sbjct: 182 EDYITDRSQRFMASEIIREKLMRFLGDELPYSVTVEIERFASNDRGGYDIHGLILVEREG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G IKTIS+EA++++ + E VHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGSKIKTISIEARQDMEAMFETRVHLELWVKVKSGWADDERA 291 >gi|302342153|ref|YP_003806682.1| GTP-binding protein Era [Desulfarculus baarsii DSM 2075] gi|301638766|gb|ADK84088.1| GTP-binding protein Era [Desulfarculus baarsii DSM 2075] Length = 296 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 158/280 (56%), Gaps = 3/280 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA+VG NAGKST +N +G K++I + K QTTR + G+ + +ESQIVFLDTPG+ Sbjct: 3 SGFVAIVGPPNAGKSTFLNHVLGFKLAITSDKPQTTRHRLLGVCNREESQIVFLDTPGLH 62 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + +KLM+R + + ++ + V +V++ + + +A+ +++ LNKID Sbjct: 63 KPMRALNKLMVRTAMAALQDVEAVLFMVEASAKGLAEGQRVAGMLAEAKKPVVVALNKID 122 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 V+ + LL E +SA KG G VL L LP P ++ D I+D Sbjct: 123 LVRDKAALLPMLERVAGWAEWAAIVPLSAAKGDGAAAVLRELAGLLPQGPAIFPEDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--GSILIRQVIYVERPSQKKI 258 L +E+ REK+F ++E+PYS+ V +++ E ++ G + I I+VER QK I Sbjct: 183 LSERFLVSELIREKVFALTNQELPYSTAVTIDEFIEPQNQRGVVAITATIHVERQGQKGI 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+ +I +L Q V+L LFV+V+ W Sbjct: 243 LIGKGGGMLKKIGASARLDIETMLGQKVYLDLFVRVEPKW 282 >gi|110834491|ref|YP_693350.1| GTP-binding protein Era-like protein [Alcanivorax borkumensis SK2] gi|110647602|emb|CAL17078.1| GTP-binding protein Era homolog [Alcanivorax borkumensis SK2] Length = 310 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 157/289 (54%), Gaps = 7/289 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G V++VG N GKSTL+N +G KVSI + K QTTR + GI+S QIVF DTPG Sbjct: 15 TRCGMVSIVGRPNVGKSTLMNHLIGQKVSITSRKPQTTRHRIHGILSRDNYQIVFADTPG 74 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 I ++ + ++ M + ST+ D++C++VD+ + + H L ++LI+N Sbjct: 75 IHTGQEKALNRAMNEAAVSTLFGVDVICMMVDAMKWTPADEHVLSLLPEGGDVPVLLIIN 134 Query: 139 KIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + LL + ++ + VSA + ++ L L + Y DQ Sbjct: 135 KVDNVDDKSALLPHIQSLSERYPFDAVIPVSALREQNLVELEKALVDRLQEGDFWYEEDQ 194 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL--IRQVIYVERPSQ 255 ++D + AEI REK+ L +E+P+ V E WE DG + I I VER Q Sbjct: 195 LTDRSLRFMVAEIIREKVVRQLGQEVPHQVSVEVELWE---DGPRVTEISAAILVERRGQ 251 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 KKI++G G+ IK I ++A+++I ++E+ V L L+VK++ W D + Sbjct: 252 KKILIGDKGERIKQIGIQAREDIERLIERKVMLNLWVKIKAGWSDDARA 300 >gi|89094543|ref|ZP_01167481.1| GTP-binding protein Era [Oceanospirillum sp. MED92] gi|89081142|gb|EAR60376.1| GTP-binding protein Era [Oceanospirillum sp. MED92] Length = 311 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 163/289 (56%), Gaps = 4/289 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R G VA+VG N GKSTL+N +G K+SI + K QTTR + GI +E + QIV++DTP Sbjct: 15 DQRCGFVAIVGRPNVGKSTLMNHILGQKLSITSKKPQTTRHQIMGIKTEGDLQIVYVDTP 74 Query: 79 GIF--NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 G+ + K + ++ M + + ++ D++ +VD + + +L ++ +IL Sbjct: 75 GLHKDDGKKALNRYMNKAASDALRDVDLIVFIVDRTAWTEED-QMVLDKVKHARCPVILA 133 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D +K + LL Q + ++ + + +SA +GH + + + S +P + Sbjct: 134 VNKVDQLKDKASLLPQMQSHSERMEFAEMIPLSAKQGHNVEQLEELIASYMPKGMHHFPD 193 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ++D AE+ REKL +L E+PY + V E+++ ++G + I +I VER Q Sbjct: 194 DQLTDKSSRFMAAEMVREKLMRNLGDEVPYGTTVEIEEFKYAENGVLHISALILVERDGQ 253 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 K+I++G G IKTI +A+ ++ + + V L L+VKV++ W D + Sbjct: 254 KRIVIGDKGDRIKTIGRDARLDMQRMFDSKVMLNLWVKVRRGWADDERA 302 >gi|148242816|ref|YP_001227973.1| GTP-binding protein Era-like protein [Synechococcus sp. RCC307] gi|147851126|emb|CAK28620.1| GTP-binding protein era homolog [Synechococcus sp. RCC307] Length = 309 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 155/286 (54%), Gaps = 9/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG N GKSTL+N+ VG KV+I + QTTR+ +R I++ + SQ+V +DTPGI Sbjct: 18 RSGFVALVGRPNVGKSTLLNQLVGEKVAITSPVAQTTRNRLRAILTTECSQLVLVDTPGI 77 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + +++ + ++I D+V ++D + + DLLK I + +++ L Sbjct: 78 HKPHHLLGERLVKTARNSIGEVDVVLALMDGSEPMGRGDQFVLDLLKSIRQ---PVVIGL 134 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D + E+ E ++++ SA G GC ++ L LP P +Y D Sbjct: 135 NKQDLIAEEQREELNASYSEVLPDAPLLPFSALTGDGCSALVEALGERLPEGPMLYPKDT 194 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-ILIRQVIYVERPSQK 256 +SD P E+ RE++ H +E+P+S V E+ E DG I + VER SQK Sbjct: 195 VSDQPENLLLGELIREQVLHHTREEVPHSVAVQIERVVE--DGPRTAILATVMVERSSQK 252 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I++G+ G +K I A+ ++ ++++ PV+L LFVKV W P Sbjct: 253 GILIGRKGSMLKEIGSGARLQMQKLIDGPVYLELFVKVVPHWRQKP 298 >gi|253682642|ref|ZP_04863439.1| GTP-binding protein Era [Clostridium botulinum D str. 1873] gi|253562354|gb|EES91806.1| GTP-binding protein Era [Clostridium botulinum D str. 1873] Length = 294 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 157/278 (56%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKSTL+N +G K+SIV+ + QTTR+ +R I+++ + Q+VFLDTPGI Sbjct: 3 KSGFISIIGRPNVGKSTLINEILGEKLSIVSCRPQTTRNNIRAILTKDDYQLVFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M++ + S+ D++ + E+ +L+ I + LI+NKI Sbjct: 63 HKPRHKLGEYMVKAAESSKDEVDLIVFITTPQNEIGKGDELILENIKNSKKPVFLIVNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D PE + E + ++ + ++ +SA K D +L+ + +P P Y D I+D Sbjct: 123 DENPPELVAETLKKYSEYMEFKEIIPISAQKNKNVDILLDLMIKYMPEGPKYYPDDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + +EI REK L +E+P+ V ++ K+G+ I + E+ S K I++ Sbjct: 183 VQERFVVSEIIREKALKLLSEEVPHGIAVEIISMKQAKNGTYHIDANLLCEKDSHKGIVI 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK GQ +K I A+++I++ L+ V+L ++V+V+K+W Sbjct: 243 GKGGQMLKKIGTYARQDISKFLDTKVNLKVWVRVKKEW 280 >gi|50122199|ref|YP_051366.1| GTP-binding protein Era [Pectobacterium atrosepticum SCRI1043] gi|49612725|emb|CAG76175.1| GTP-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 301 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 159/287 (55%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++LM R + S++ +++ VV+ N D +L ++ + ++L +NK Sbjct: 69 EEKRAINRLMNRAASSSMGDVELIIFVVEG---THWNDDDDMVLNKLRDQKLPVLLAINK 125 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D V + +LL + ++ + +SA KG D + + + LP A + D I Sbjct: 126 VDNVTDKTKLLPHIQFLSQQMDFLDVVPISAEKGSNVDTIASIVRKHLPQATHHFPEDYI 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKL L +E+PYS V E++ + G I +I VER QKK+ Sbjct: 186 TDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVTNERGGYDINGLILVEREGQKKM 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++G G IKTI +E+++++ E+ E VHL L+VKV+ W D + Sbjct: 246 VIGNKGSKIKTIGIESRQDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|212636522|ref|YP_002313047.1| GTP-binding protein Era [Shewanella piezotolerans WP3] gi|212558006|gb|ACJ30460.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Shewanella piezotolerans WP3] Length = 330 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 159/286 (55%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI ++ Q+VF+DTPG+ Sbjct: 37 GMVAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGPRQVVFIDTPGLHM 96 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNK 139 K + ++LM R + S++ +V VVD + +L+++ R+ + +L +NK Sbjct: 97 EEKRAINRLMNRAAASSLAEVSLVVFVVDGMN-WTADDEMVLRKLQSRNDGRKTVLAINK 155 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D +K E L E +K ++ +SAT+G +L+ ++P +P + D + Sbjct: 156 VDNIKDKEALFPHLEELSKKFEFDEILPISATQGTNVQRILDMSVESVPESPHFFPEDYV 215 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKL L E+PY V E+++ ++G I ++ VER +QK++ Sbjct: 216 TDRSQKFMASEIVREKLMRFLGDELPYDCTVEIEQFKMMENGVYQINALVLVERETQKRM 275 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++G G+ IK IS A+ ++ + + V L ++VKV+ W D + Sbjct: 276 VIGNKGERIKKISSAARVDMEVLFDNKVFLEMWVKVKSGWADDERA 321 >gi|239979360|ref|ZP_04701884.1| GTP-binding protein Era [Streptomyces albus J1074] gi|291451235|ref|ZP_06590625.1| GTP-binding protein Era [Streptomyces albus J1074] gi|291354184|gb|EFE81086.1| GTP-binding protein Era [Streptomyces albus J1074] Length = 313 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 161/297 (54%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 13 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPDAQLILVDTPGL 72 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L + KEIA + + + + Sbjct: 73 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDRFIAKEIAGIKKTPKVAV 129 Query: 137 LNKIDCVKPERLLEQA----EIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V ++L EQ ++A +L F + VSA KG + + + L +P P Sbjct: 130 VTKTDLVDGKQLAEQLIAVDQLAAELGFEWAEIIPVSAVKGDQVELLTDLLAPLMPEGPA 189 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 190 LYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIHA 249 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++ERPSQK I++G G+ +K + ++++K I +L PV L L VKV KDW DPK Sbjct: 250 NVFIERPSQKGIIIGPKGKRLKEVGVKSRKHIEALLGTPVFLDLHVKVAKDWQRDPK 306 >gi|313837272|gb|EFS74986.1| GTP-binding protein Era [Propionibacterium acnes HL037PA2] gi|314928053|gb|EFS91884.1| GTP-binding protein Era [Propionibacterium acnes HL044PA1] gi|314972043|gb|EFT16141.1| GTP-binding protein Era [Propionibacterium acnes HL037PA3] Length = 341 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 157/294 (53%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V+ ++SQIV +DTPG+ Sbjct: 41 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTGEKSQIVVIDTPGLH 100 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLILILNK 139 + + + L + T D++ + + S++ + L+ +IA R LI + K Sbjct: 101 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIADFPRRPTLIALATK 160 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E KL V IE ++ SA G D+V + + S LP P Y Sbjct: 161 SDLVSKARMAEHLVAIGKLQEEVGIEFAEIIPCSAVSGEQVDEVRDAIVSLLPEGPAYYP 220 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + D +L + + Sbjct: 221 DGEVTDEPTDTLVAELIREAALEGVREELPHSLAVEIVEMGLREGQPDDHPLLDVYASLI 280 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P HL L VKV +W DPK Sbjct: 281 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPTHLDLQVKVLPNWQSDPK 334 >gi|228916932|ref|ZP_04080494.1| GTP-binding protein era [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929343|ref|ZP_04092368.1| GTP-binding protein era [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935620|ref|ZP_04098435.1| GTP-binding protein era [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948013|ref|ZP_04110299.1| GTP-binding protein era [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093369|ref|ZP_04224476.1| GTP-binding protein era [Bacillus cereus Rock3-42] gi|229123838|ref|ZP_04253032.1| GTP-binding protein era [Bacillus cereus 95/8201] gi|229141037|ref|ZP_04269580.1| GTP-binding protein era [Bacillus cereus BDRD-ST26] gi|229186539|ref|ZP_04313701.1| GTP-binding protein era [Bacillus cereus BGSC 6E1] gi|229198426|ref|ZP_04325132.1| GTP-binding protein era [Bacillus cereus m1293] gi|228585126|gb|EEK43238.1| GTP-binding protein era [Bacillus cereus m1293] gi|228596970|gb|EEK54628.1| GTP-binding protein era [Bacillus cereus BGSC 6E1] gi|228642470|gb|EEK98758.1| GTP-binding protein era [Bacillus cereus BDRD-ST26] gi|228659659|gb|EEL15305.1| GTP-binding protein era [Bacillus cereus 95/8201] gi|228690025|gb|EEL43826.1| GTP-binding protein era [Bacillus cereus Rock3-42] gi|228811703|gb|EEM58038.1| GTP-binding protein era [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824060|gb|EEM69877.1| GTP-binding protein era [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830357|gb|EEM75969.1| GTP-binding protein era [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842756|gb|EEM87842.1| GTP-binding protein era [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 266 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 146/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID V PE+LLE + KL + +SA Sbjct: 61 NAVEGFGRGEEFIIEKLKETKQPVFLVINKIDQVHPEQLLELIDQYRKLHDFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ + ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVEALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VERPSQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERPSQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|328950083|ref|YP_004367418.1| GTP-binding protein Era-like-protein [Marinithermus hydrothermalis DSM 14884] gi|328450407|gb|AEB11308.1| GTP-binding protein Era-like-protein [Marinithermus hydrothermalis DSM 14884] Length = 299 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 155/289 (53%), Gaps = 8/289 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA+VG N GKSTL+N +G KV+ +T K QTTR VRGI +E QIVF+DTPG+ Sbjct: 8 SGFVAIVGKPNVGKSTLLNTMLGVKVAPITPKPQTTRKTVRGIYTEGNRQIVFVDTPGLH 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVN--IHDLLKEIAKRSSRLILILN 138 D+ + + + + +++ +VD H + + L+ + R ++L+ N Sbjct: 68 KPADALGEYINEQVYEALADVNLILWLVDLRHPPTDEDRLVARALEPLVGRVP-ILLVGN 126 Query: 139 KIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD- 196 K+D K P+ LE L IE+ +SA ++ + + LP P+ Y Sbjct: 127 KVDAAKYPDEALEAYRAL--LPQIEEVRTLSALDERDVANLRAEILALLPEGPFFYPDTF 184 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 SD P + AEI RE+ L +E+PY+ V E +EE+ +G + I+ V+YVER K Sbjct: 185 TRSDQPPEQWAAEIVREEAMKRLREEVPYAVAVKVETFEERPNGVVYIQAVLYVEREGHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G+ +K I A+K++ L + V+L L V+V +W DP+ Sbjct: 245 AIVIGKQGRMLKEIGRAARKQLEVFLNRKVYLDLEVRVYPNWRKDPEAL 293 >gi|323144163|ref|ZP_08078799.1| ribosome biogenesis GTPase Era [Succinatimonas hippei YIT 12066] gi|322416071|gb|EFY06769.1| ribosome biogenesis GTPase Era [Succinatimonas hippei YIT 12066] Length = 301 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/293 (35%), Positives = 169/293 (57%), Gaps = 6/293 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++++S+ G VAL+G N GKSTL+N +G KVSI + + QTTR+ V GI ++ E Q VF+ Sbjct: 1 MENSSKFGFVALIGRPNVGKSTLMNHLIGQKVSITSRRPQTTRNRVLGIDTQGEYQAVFV 60 Query: 76 DTPGIFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL-KEIAKRSSRL 133 DTPG+ K + ++LM R + S + +++ LVVD+ L + +++ +I + Sbjct: 61 DTPGLHKEEKRAINRLMNRAAESALGDVELILLVVDAT--LWTDDDEMVFSKIENTKVPV 118 Query: 134 ILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +L++NKID + + LL E +K V + VSA + DD+ + +LP P Sbjct: 119 VLVINKIDKLHDKATLLPLIERLSKRVSFKAIVPVSALRSTNLDDLKKLVFESLPEGPHC 178 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 +S D I+D AE+ REKL + E+PYS+ V E+++E+++ + I VI VER Sbjct: 179 FSEDSITDRSSRFMAAELIREKLMRQMGDELPYSATVEIEEFKEEEN-LLRISAVILVER 237 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G G IK I +A+ ++ ++ + V L LFVKV+ W D + Sbjct: 238 AGQKKMVIGAGGSRIKRIGTDARIDMEKLFDSKVFLNLFVKVKAGWADDERAL 290 >gi|253689439|ref|YP_003018629.1| GTP-binding protein Era [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756017|gb|ACT14093.1| GTP-binding protein Era [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 301 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 159/287 (55%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++LM R + S+I +++ VV+ N D +L ++ + ++L +NK Sbjct: 69 EEKRAINRLMNRAASSSIGDVELIIFVVEG---THWNDDDEMVLNKLRDQKLPVLLAINK 125 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D V + +LL + ++ + +SA KG D + + + LP A + D I Sbjct: 126 VDNVTDKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIASIVRKHLPQATHHFPEDYI 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKL L +E+PYS V E++ + G I +I VER QKK+ Sbjct: 186 TDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVTNERGGYDINGLILVEREGQKKM 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++G G IKTI +E+++++ E+ E VHL L+VKV+ W D + Sbjct: 246 VIGNKGAKIKTIGIESRQDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|42560997|ref|NP_975448.1| GTP-binding protein Era [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492494|emb|CAE77090.1| GTP-BINDING PROTEIN ERA HOMOLOG [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320412|gb|ADK69055.1| GTP-binding protein Era [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 301 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 163/287 (56%), Gaps = 4/287 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDT 77 N +SG V+++G N GKSTL+N+ +G K+SIVT+K QTTR+ +RGI+++K+ QIVF+DT Sbjct: 3 NFKSGFVSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ +K K + + + K D++ + S + N LLK+I IL++ Sbjct: 63 PGVHTSKKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKILVI 122 Query: 138 NKIDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSA 195 K D V E+L+ +A E ++ ++ + S+ + +L + + L + Y Sbjct: 123 TKADNVTKEQLILKANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSDNDYQFYDD 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI RE + L +E+P+S V+ E E+ + I I I VER SQ Sbjct: 183 DILTDQSDRFMIKEIIRENILLKTGQEVPHSVAVLVEHLEQ-NENEINISCAIIVERQSQ 241 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 K I++GKNG I I ++KK+I + ++ ++L LFVKVQ++W + P Sbjct: 242 KSIIIGKNGVKISDIRYKSKKQIQALFKKRINLELFVKVQENWRNSP 288 >gi|262278197|ref|ZP_06055982.1| GTP-binding protein16S rRNA-binding,ribosome-associated GTPase [Acinetobacter calcoaceticus RUH2202] gi|262258548|gb|EEY77281.1| GTP-binding protein16S rRNA-binding,ribosome-associated GTPase [Acinetobacter calcoaceticus RUH2202] Length = 342 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/311 (32%), Positives = 168/311 (54%), Gaps = 14/311 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FF+ + + +SG VA+VG N GKSTL+N +G K+SI + K QTTR + GI S Sbjct: 25 FFSSKGVTIPSDFKSGFVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSR 84 Query: 68 KESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 ++ Q V++DTPG+ + + +K+M R + S ++ ++V V+D+++ N +L+++ Sbjct: 85 EKMQAVYVDTPGMHKKEVRAINKMMNRAAHSALRDVNLVLFVIDAYK-WTPNDDLVLEKL 143 Query: 127 AKRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +IL++NK D + +R +L + KL+ + VSA +G + + + Sbjct: 144 KNAEMPVILVINKADTFEDKRDILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKY 203 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-----------VTEKW 234 LP +YS DQI+D +EI REK+ L +E+PY V V EK Sbjct: 204 LPYQAPLYSFDQITDRSERFLASEIIREKIMRQLGEELPYDLTVQIESFKTEEAAVNEKT 263 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 K I I+V+R QK I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV Sbjct: 264 GRLKPACTYIDATIFVDRAGQKAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKV 323 Query: 295 QKDWGHDPKCC 305 + W D + Sbjct: 324 KGGWSDDERAL 334 >gi|328907177|gb|EGG26943.1| GTP-binding protein Era [Propionibacterium sp. P08] Length = 340 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 157/294 (53%), Gaps = 12/294 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V VG NAGKSTL N VG+K++I + K QTTR ++RG+V+ ++SQIV +DTPG+ Sbjct: 40 SGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTGEKSQIVVIDTPGLH 99 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLILILNK 139 + + + L + T D++ + + S++ + L+ +IA R LI + K Sbjct: 100 KPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIADFPRRPTLIALATK 159 Query: 140 IDCVKPERLLEQAEIANKL---VFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V R+ E KL V IE ++ SA G D+V + + S LP P Y Sbjct: 160 SDLVSKARMAEHLVAIGKLQEEVGIEFAEIIPCSAVSGEQVDEVRDAIVSLLPEGPAYYP 219 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSIL-IRQVIY 249 +++D P AE+ RE + +E+P+S V + + + D +L + + Sbjct: 220 DGEVTDEPTDTLVAELIREAALEGVREELPHSLAVEIVEMGLREGQPDDHPLLDVYASLI 279 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK IM+G +G +IK + A+++IA +L P HL L VKV +W DPK Sbjct: 280 VERDSQKGIMIGHHGSHIKQVRTHARRQIAALLGTPTHLDLQVKVLPNWQSDPK 333 >gi|254360745|ref|ZP_04976893.1| GTP-binding protein Era [Mannheimia haemolytica PHL213] gi|153091315|gb|EDN73289.1| GTP-binding protein Era [Mannheimia haemolytica PHL213] Length = 305 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 160/286 (55%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E + Q +++DTPG+ Sbjct: 14 GFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHI 73 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S I D++ VV+ + + + +L ++ + ++L +NKID Sbjct: 74 EEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTEDD-EMVLNKLRSAKAPVLLAINKID 132 Query: 142 CVKP-ERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +K E LL E++ K F E +SA +G + ++ +L + + ++ Sbjct: 133 NIKEKEELLPHITELSQKFDFAE-ILPISAQRGKNVHILQKFVRQSLRQGEHHFPEEYVT 191 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL +E+PYS V E+++ + G I +I VER QKK++ Sbjct: 192 DRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKMNERGVYEINGLILVERDGQKKMV 251 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G GQ IKTI +EA+K++ + + VHL L+VKV+ W D + Sbjct: 252 IGAGGQKIKTIGIEARKDMERLFDNQVHLELWVKVKAGWADDERAL 297 >gi|54310186|ref|YP_131206.1| GTP-binding protein Era [Photobacterium profundum SS9] gi|46914627|emb|CAG21404.1| putative GTP-binding protein Era [Photobacterium profundum SS9] Length = 301 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 162/288 (56%), Gaps = 8/288 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+NR VG K+SI + K QTTR + G+ + Q VF+DTPG+ Sbjct: 8 GFIAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVFIDTPGLHI 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V +VD + +L ++ K +L++NK+D Sbjct: 68 EEKRTINRLMNRAASSSLTDVELVLFLVDGTM-WTADDEMVLNKLKKSELPTVLLINKVD 126 Query: 142 CVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK + L ++ K+ F++ +SA KG D V + + +P + + D ++ Sbjct: 127 NVKEKGDLFPHLDALSKKMDFVD-VVPISAKKGTNVDAVEKIVRAHIPEGEYYFPEDYVT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVERPSQKK 257 D +EI REKL L +E+PYS V E+++ K DG I +I+VER QKK Sbjct: 186 DRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFDYNPKMDG-FDINGLIFVERKGQKK 244 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++GKNG+ +K I EA+ ++ ++ + V+L L+VKV+ W D + Sbjct: 245 MVIGKNGEKMKVIGREARIDMEDLFGRKVYLELWVKVKSGWADDERAL 292 >gi|295105854|emb|CBL03397.1| GTP-binding protein Era [Gordonibacter pamelaeae 7-10-1-b] Length = 305 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 156/282 (55%), Gaps = 1/282 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V LVG NAGKSTL+N +G K++I + QTTR R +++ ++ Q++ +DTPG+ Sbjct: 11 KSGFVTLVGRPNAGKSTLINAIMGKKIAITSDTAQTTRHRFRAVLTREDFQLILVDTPGL 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D+ + + + ++ D+V +++D+ + + + +++++ S+ I +L+K+ Sbjct: 71 HKPHDALGEELNTSALKALEDVDVVAMLIDASQPIGRGDEWVAEQLSRVRSKKICVLSKL 130 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +++ Q E A L + +S+ G D + + LP P + AD +D Sbjct: 131 DLATEKQISAQREAAEALGAWDAMVGLSSATGKNVDAFVEEVVYLLPEGPAWFPADMETD 190 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE-EKKDGSILIRQVIYVERPSQKKIM 259 P+ AE REK+ H E+P++ V ++ E +KK I +YVER SQK I+ Sbjct: 191 QPIEVVVAEFIREKILRSFHDEVPHAIGVRVDEMEYDKKKDLHRIFATVYVERDSQKGII 250 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +GK G IK I EA+ ++ ++L V+L L VKV+K+W D Sbjct: 251 IGKKGAAIKQIGTEARADLEQLLGTRVYLDLSVKVKKNWRRD 292 >gi|297199566|ref|ZP_06916963.1| GTP-binding protein Era [Streptomyces sviceus ATCC 29083] gi|197713506|gb|EDY57540.1| GTP-binding protein Era [Streptomyces sviceus ATCC 29083] Length = 322 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 160/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I ++ QTTR VRGIV +++Q++ +DTPG+ Sbjct: 22 RAGFACFVGRPNAGKSTLTNALVGHKVAITANQPQTTRHTVRGIVHREDAQLILVDTPGL 81 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + ++ +L + KE+A + S + I Sbjct: 82 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELAGIKKSPKVAI 138 Query: 137 LNKIDCVKPERLLEQAEIANKL---VFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V + L EQ ++L + IE + VSAT D + + L LP P Sbjct: 139 ITKTDLVDSKTLAEQLIAVDQLGKELGIEWAEIVPVSATANKQVDLLADLLIPMLPEGPA 198 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 199 LYPEGDLTDEPEQVMIAELIREAALEGVRDELPHSIAVVVEEMIPREDRPADKPLLDIHA 258 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + ++++K+I +L PV L L VKV KDW DP+ Sbjct: 259 FVYIERPSQKGIIIGPKGKRLKEVGIKSRKQIEALLGTPVFLDLHVKVAKDWQRDPR 315 >gi|294784965|ref|ZP_06750253.1| GTP-binding protein Era [Fusobacterium sp. 3_1_27] gi|294486679|gb|EFG34041.1| GTP-binding protein Era [Fusobacterium sp. 3_1_27] Length = 298 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 161/291 (55%), Gaps = 23/291 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSGKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + M ++ +K DI+ ++D+ + + + D + E K+ + IL++ Sbjct: 62 HKPQHLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENTKKKPK-ILLV 120 Query: 138 NKIDCVKPERLLEQAEIA-------NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK+D + E+ E+ + NK++F S G +L L L Sbjct: 121 NKVDLISDEQKEEKLKEIKEKLGEFNKIIF------ASGMYSFGISQLLEALDPYLEEGV 174 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVV---TEKWEEKKDGSILIRQV 247 Y D +D+ + EI REK+ L EIP+S V E+ E KKD + Sbjct: 175 KYYPDDMYTDMSTYRIITEIVREKILLKTRDEIPHSVAVEIINVERKEGKKDKFDI---N 231 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 IYVER SQK I++GK+G+ +K I +EA+KEI E+L + ++L L+VKV+ DW Sbjct: 232 IYVERDSQKGIIIGKDGKMLKEIGVEARKEIEELLGEKIYLGLWVKVKDDW 282 >gi|322834126|ref|YP_004214153.1| GTP-binding protein Era [Rahnella sp. Y9602] gi|321169327|gb|ADW75026.1| GTP-binding protein Era [Rahnella sp. Y9602] Length = 301 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/291 (35%), Positives = 156/291 (53%), Gaps = 15/291 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVN-IHDLLKEIAKRSSRLIL 135 K + ++LM R + S+I ++V VV+ E+ VN + DL S ++L Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVVNKLRDL-------KSPVLL 121 Query: 136 ILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NKID V + +LL + ++ + +SA KG D + + LP A + Sbjct: 122 AINKIDNVTDKSKLLPHLQFLSEQMNFVDIVPISAEKGTNVDTIAALVRKRLPEAVHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L +E+PYS V E++ + G I +I VER Sbjct: 182 EDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVSNERGGYDINGLILVEREG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G G IKTI +EA+ ++ + E VHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGSKIKTIGIEARHDMENMFEAKVHLELWVKVKSGWADDERAL 292 >gi|288916969|ref|ZP_06411341.1| GTP-binding protein Era [Frankia sp. EUN1f] gi|288351678|gb|EFC85883.1| GTP-binding protein Era [Frankia sp. EUN1f] Length = 305 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 155/292 (53%), Gaps = 10/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +VG NAGKSTL N VG KV+I + + QTTR +RGI+ ++Q++ +DTPG+ Sbjct: 8 RSGFACVVGRPNAGKSTLTNSLVGTKVAITSGRPQTTRHAIRGIIHRPDAQLILVDTPGL 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + +T+ D++ + + L I D L +A+R+ ++ IL Sbjct: 68 HRPRTLLGQRLNDVVRATLSEVDVIGFCMPADEPLGRGDRFIADELGRLARRTP-VVAIL 126 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D V P+R+ + + L + VSA D + + L + LP P +Y Sbjct: 127 TKVDKVADPDRVGARLLEVSGLGDFAEIVPVSAVSAFQVDRLADVLVARLPEGPRLYPEG 186 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK----DGSIL-IRQVIYVE 251 +++D P AE+ RE + E+P+S VV E+ ++ D +L +R ++VE Sbjct: 187 ELTDEPEQVMVAELVREAALEGVRDELPHSLAVVVEEMLPREGRPADRPLLDVRVNVFVE 246 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 R SQK I++G G ++ + A+ +I +L PV+L L VKV KDW DPK Sbjct: 247 RSSQKAIVIGSGGSRLRDVGTRARTQIEALLGTPVYLDLHVKVAKDWQRDPK 298 >gi|271501620|ref|YP_003334646.1| GTP-binding protein Era [Dickeya dadantii Ech586] gi|270345175|gb|ACZ77940.1| GTP-binding protein Era [Dickeya dadantii Ech586] Length = 301 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 166/297 (55%), Gaps = 15/297 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++D Sbjct: 3 EEQTYCGFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRS 130 TPG+ K + ++LM R + S+I +++ VV+ E+ VN ++ + Sbjct: 63 TPGLHIEEKRAINRLMNRAASSSIGDVELIIFVVEGTHWTDDDEMVVN------KLRDQK 116 Query: 131 SRLILILNKIDCVKPE-RLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + ++L +NK+D V + +LL + ++ K+ F++ +SA KG D + + LP Sbjct: 117 TPVLLAINKVDNVTDKTKLLPHIQMLSEKMNFLD-VVPISAEKGTNVDTIAAIVRKHLPQ 175 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 A + D I+D +EI REKL L +E+PYS V E++ + G I +I Sbjct: 176 AIHHFPEDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVANERGGYDINGLI 235 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA++++ ++ + VHL L+VKV+ W D + Sbjct: 236 LVEREGQKKMVIGNKGTKIKTIGIEARQDMEQMFDAKVHLELWVKVKSGWADDERAL 292 >gi|331703462|ref|YP_004400149.1| GTP binding protein Era [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802017|emb|CBW54171.1| GTP binding protein Era homolog [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 301 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 163/287 (56%), Gaps = 4/287 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDT 77 N +SG V+++G N GKSTL+N+ +G K+SIVT+K QTTR+ +RGI+++K+ QIVF+DT Sbjct: 3 NFKSGFVSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ +K K + + + K D++ + S + N LLK+I IL++ Sbjct: 63 PGVHTSKKQLDKFLNTSALKSTKDVDVILFLAPSDEAIGKNDLFLLKQIKNLDVFKILVI 122 Query: 138 NKIDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSA 195 K D V E+L+ +A E ++ ++ + S+ + +L + + L + Y Sbjct: 123 TKADNVTKEQLILKANEWSSFQDQFDEIIITSSIINLNIEKLLELIVNNLSDNDYQFYDD 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI RE + L +E+P+S V+ E E+ + I I I VER SQ Sbjct: 183 DILTDQSDRFMIKEIIRENILLKTGQEVPHSVAVLVEHLEQ-NENEINISCAIIVERQSQ 241 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 K I++GKNG I I ++KK+I + ++ ++L LFVKVQ++W + P Sbjct: 242 KSIIIGKNGVKISDIRYKSKKQIQALFKKRINLELFVKVQENWRNSP 288 >gi|319947868|ref|ZP_08022055.1| GTPase Era [Dietzia cinnamea P4] gi|319438474|gb|EFV93407.1| GTPase Era [Dietzia cinnamea P4] Length = 302 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 155/291 (53%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N RSG V+ VG N GKSTL N VG K++I + K QTTR +RGIV ++QI+ +DT Sbjct: 5 ENYRSGFVSFVGRPNTGKSTLTNALVGEKIAITSAKPQTTRHAIRGIVHRSDAQIILVDT 64 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLIL 135 PG+ + + + L T D++ L + + + +L+++ K ++ L+ Sbjct: 65 PGLHRPRTLLGERLNALVEDTYSDVDLIGLCIPAGERIGPGDRWILEQVRKLCPTTPLLG 124 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++ KID V ++++EQ ++L+ + + VSA G D V + + S LP P Y Sbjct: 125 LVTKIDTVSKQKVMEQLVAVSELLGPDSEVVPVSAVSGEQVDVVADVIASLLPEGPQFYP 184 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVER 252 D +++ AE+ RE + E+P+S V E+ E +D + + +YVER Sbjct: 185 DDVVTEESDETRMAELIREAALEGVRDELPHSIAVTIEEVLPHEGRDDMVDVHATVYVER 244 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I+LGK G ++ + A+ I +L V+L L VKV K+W DPK Sbjct: 245 QSQKSIVLGKGGSRMREVGTRARAGIEALLGTKVYLDLHVKVLKEWQRDPK 295 >gi|317132159|ref|YP_004091473.1| GTP-binding protein Era [Ethanoligenens harbinense YUAN-3] gi|315470138|gb|ADU26742.1| GTP-binding protein Era [Ethanoligenens harbinense YUAN-3] Length = 296 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 156/280 (55%), Gaps = 5/280 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA++G N GKSTL+N +G K++IV+ K QTTR+ + G+ ++ ++Q++FLDTPG Sbjct: 6 SGFVAIIGRPNVGKSTLLNAILGEKIAIVSPKPQTTRNKITGVYTKDDTQLIFLDTPGWH 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K M + +T+ D V V++ + +LL ++ K+ ++L++NKID Sbjct: 66 QPKTKLGNYMAKSVDNTLTDVDAVLFVIEPREAPRPAETELLGKLGKQVP-VLLVINKID 124 Query: 142 CVKPERLLEQAEIA--NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 + + L IA +KL +SA K G D +L L S +P P Y D ++ Sbjct: 125 ILADKSAL-MGVIAHWSKLRDFTAVVPISAEKNDGVDALLAELISLMPEGPQYYPDDMVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 P AEI REKL L EIP+ V E+ E++ GS++ I VIY ER S I Sbjct: 184 AEPERLVVAEIIREKLLTLLSAEIPHGIAVSIERMHERETGSLIDIDAVIYCERESHTGI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K + ++A+ +I +L V L L+VKV+++W Sbjct: 244 IVGKGGAMLKKVGIKARADIESLLGCHVSLHLWVKVKENW 283 >gi|148240062|ref|YP_001225449.1| GTP-binding protein Era [Synechococcus sp. WH 7803] gi|147848601|emb|CAK24152.1| GTP-binding protein era homolog [Synechococcus sp. WH 7803] Length = 312 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 158/291 (54%), Gaps = 9/291 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VAL+G N GKSTLVN+ VG KV+I + QTTR+ +R I++ E+Q++ +DTPGI Sbjct: 11 RSGFVALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTDEAQLILVDTPGI 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + +++ + S I D V L+++ ++ + ++ + ++LNK Sbjct: 71 HKPHHLLGERLVQSARSAIGEVDQVLLLLEGCEPPGRGDAFIVNLLRQQRLPVQVVLNKW 130 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D V P +A+ A + + E + + A G GC +++ + + +P P +Y + Sbjct: 131 DQV-PTAQRPEADAAYRDLLAESGWPIHHCCALTGEGCPELVQAVSALMPEGPQLYPPEM 189 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-----KKDGSILIRQVIYVER 252 +SD P AE+ RE++ L +E+P+S V ++ EE K G + + VER Sbjct: 190 VSDQPERLLMAELIREQVLLLTREEVPHSVAVSIDRVEEMPSKGKGGGRTAVLATVLVER 249 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++GK G +K I A+ ++ +++ PV+L LFVKV DW P+ Sbjct: 250 KSQKGILIGKGGAMLKAIGQGARLQMQTLIDGPVYLELFVKVVPDWRSKPQ 300 >gi|85712959|ref|ZP_01043998.1| GTPase Era [Idiomarina baltica OS145] gi|85693197|gb|EAQ31156.1| GTPase Era [Idiomarina baltica OS145] Length = 315 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 173/292 (59%), Gaps = 3/292 (1%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + +N + G VA+VG N GKST++NR +G KVSI + K QTTR + G+ +E + Q V++ Sbjct: 17 IDENKQCGFVAIVGRPNVGKSTMLNRILGQKVSITSSKPQTTRHRILGVDTEGDYQTVYV 76 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPG+ + +++M + + S +K D++ VV++ R ++ +L+++ K + ++ Sbjct: 77 DTPGMHLEEPRAINRVMNQTASSALKDVDLILFVVENTRWNDDDVM-VLEKLKKTETPIV 135 Query: 135 LILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L++NK+D +K + +LL + ++ + +++ VSA G + + + + L Y Sbjct: 136 LVVNKVDQIKDKNKLLPHLQWLSQQLSVKEIIPVSAKTGDNLEPLRDIVKGFLQSGYHFY 195 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 AD ++D + TAEI REKL +E+PY + V E++ + + G+ I +I VER Sbjct: 196 PADYVTDRSVRFMTAEIIREKLMRFTGEELPYETTVEIEQFGQSERGTHHIHALILVERE 255 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +QK++++G+ GQ +KTI EA+K++ +L V L L+VKV+ W D + Sbjct: 256 AQKRMVIGEKGQKLKTIGTEARKDLERLLNNKVLLKLWVKVKSGWSDDERAL 307 >gi|78485080|ref|YP_391005.1| GTP-binding protein Era [Thiomicrospira crunogena XCL-2] gi|78363366|gb|ABB41331.1| GTP-binding protein Era [Thiomicrospira crunogena XCL-2] Length = 314 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 161/291 (55%), Gaps = 12/291 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 +G VA++G N GKST++N +G K+SI + K QTTR + GI + + QIVF+DTPG+ Sbjct: 19 AGFVAVIGRPNVGKSTIMNGLLGQKLSITSPKPQTTRHRIHGIHTTEHFQIVFVDTPGMH 78 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL----ILI 136 A S ++ M R + S D + VV++ R K + + +A + L I++ Sbjct: 79 LGASKSINRYMNRAANSAFGDVDAILFVVEAGRWSKED-----QAVADKCQNLEVPVIVL 133 Query: 137 LNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID K E L + + V E VSA G D + + +P P ++ Sbjct: 134 VNKIDKFKKKEELFPFLQKVGEKVPFEALIPVSAYTKSGFDAIEAEILKHIPEQPAIFPE 193 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE-EKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L E+PY + V E+++ ++++ I +I VERP Sbjct: 194 DYITDRSTRFLASEIVREKLMRTLGDEVPYGATVEIEQFKFDEEENRWHINALILVERPG 253 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK+I++GK G+ IK + ++A+K++ +L+ VHL L+VKV+++W D + Sbjct: 254 QKQIVIGKKGEQIKQMGIQARKDLMHLLDSRVHLELWVKVKENWSDDERAL 304 >gi|302878421|ref|YP_003846985.1| GTP-binding protein Era [Gallionella capsiferriformans ES-2] gi|302581210|gb|ADL55221.1| GTP-binding protein Era [Gallionella capsiferriformans ES-2] Length = 303 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 167/294 (56%), Gaps = 13/294 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+ RSG +A+VG N GKSTL+N +G K+SI + K QTTR + GI ++ SQ VF+DT Sbjct: 11 DSYRSGYIAIVGRPNVGKSTLLNHLIGQKISITSRKAQTTRHRINGIYTDDHSQFVFVDT 70 Query: 78 PGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRL 133 PG F K ++ ++ M R+ S+++ +V V+++ R E + LL + + + Sbjct: 71 PG-FQLKHLNALNRGMNRVVTSSLRDVQVVMYVLEALRYDERDQEVLKLLPD----NRPV 125 Query: 134 ILILNKIDCVKPE-RLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +L++NKID V + +L + AE IA F + VSA G +++ + L S LP Sbjct: 126 LLVINKIDEVADKGQLFDFAERIAKDFKFAD-IVPVSAKFGKKIEELRDTLRSFLPEGGL 184 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y AD ++D +EI REK+F +E+PYS VV EK+E K I I V+ Sbjct: 185 IYDADDVTDRSERFLASEILREKVFRFTGEELPYSVSVVIEKFEMDKKLR-RISAAILVD 243 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 + + K ++LGK G+ IK I+ +A+ ++ ++ + V L +F+KV+ W D + Sbjct: 244 KEAHKAMLLGKKGEKIKEIATQARLDMEKLFDGKVFLEVFIKVRSGWADDSRIL 297 >gi|319779261|ref|YP_004130174.1| GTP-binding protein Era [Taylorella equigenitalis MCE9] gi|317109285|gb|ADU92031.1| GTP-binding protein Era [Taylorella equigenitalis MCE9] Length = 296 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 170/289 (58%), Gaps = 13/289 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++G +A+VG N GKSTL+N + +K+SIV+ K QTTR + G++++ Q +F+DTP Sbjct: 5 NLKAGYIAVVGRPNVGKSTLMNALIDSKISIVSRKAQTTRHRIHGVLTKDSVQYIFVDTP 64 Query: 79 GIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLI 134 G F + + + +M R+ ST+ D++ VV++ + + I LL ++ I Sbjct: 65 G-FQTRHGGTMNNMMNRVVTSTLNDVDVILHVVEAGKWNDGDAQIIPLL----PKNKPAI 119 Query: 135 LILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L+L+K+D +K + L +I K + E VS+ K D +L+ + LP + + Sbjct: 120 LVLSKVDLLKDKNSLFAFTKDILQKHTY-EAVVPVSSEKTIQLDTLLDEISIRLPESEHL 178 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 + + I+D + +EI REK+F + E+PY VV EKW+E+ G+ I I VER Sbjct: 179 FDEEAITDRSIKFIVSEIIREKIFRLVGDELPYECTVVIEKWDEEASGT-SINACILVER 237 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + K I+LG G ++K I+ EA+++I++++++PV+L +F+KV+K W D Sbjct: 238 ENHKPILLGTKGMHMKRIASEARQDISKLIDKPVYLEIFIKVRKGWSSD 286 >gi|291444476|ref|ZP_06583866.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 15998] gi|291347423|gb|EFE74327.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 15998] Length = 321 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 160/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 21 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRDDAQLILVDTPGL 80 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L ++KE+A + + I I Sbjct: 81 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDKYIVKELAGIKKTPKIAI 137 Query: 137 LNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V+ + L EQ + +A +L F + VSA D + + + LP +P Sbjct: 138 ITKTDLVESKALAEQLLAVSALAEELGFEWAEIVPVSAVGDKQVDLLADLIAPLLPESPP 197 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSIL-IRQ 246 +Y ++D P AE+ RE + E+P+S VV E + + D +L I Sbjct: 198 LYPEGDLTDEPEMVMVAELIREAALEGVRDELPHSIAVVVEEMLPRTDRPADKPLLDIHA 257 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + +++K I +L PV L L VKV KDW DPK Sbjct: 258 NVYIERPSQKGIIIGPKGKRLKDVGTKSRKHIEALLGTPVFLDLHVKVAKDWQRDPK 314 >gi|239941036|ref|ZP_04692973.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 15998] gi|239987515|ref|ZP_04708179.1| GTP-binding protein Era [Streptomyces roseosporus NRRL 11379] Length = 324 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 160/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 24 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRDDAQLILVDTPGL 83 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L ++KE+A + + I I Sbjct: 84 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDKYIVKELAGIKKTPKIAI 140 Query: 137 LNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V+ + L EQ + +A +L F + VSA D + + + LP +P Sbjct: 141 ITKTDLVESKALAEQLLAVSALAEELGFEWAEIVPVSAVGDKQVDLLADLIAPLLPESPP 200 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSIL-IRQ 246 +Y ++D P AE+ RE + E+P+S VV E + + D +L I Sbjct: 201 LYPEGDLTDEPEMVMVAELIREAALEGVRDELPHSIAVVVEEMLPRTDRPADKPLLDIHA 260 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + +++K I +L PV L L VKV KDW DPK Sbjct: 261 NVYIERPSQKGIIIGPKGKRLKDVGTKSRKHIEALLGTPVFLDLHVKVAKDWQRDPK 317 >gi|157960866|ref|YP_001500900.1| GTP-binding protein Era [Shewanella pealeana ATCC 700345] gi|157845866|gb|ABV86365.1| GTP-binding protein Era [Shewanella pealeana ATCC 700345] Length = 330 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 159/286 (55%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI ++ Q+VF+DTPG+ Sbjct: 37 GMVAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGPRQVVFIDTPGLHM 96 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNK 139 K + ++LM R + S++ +V VVD + +L+++ R + IL +NK Sbjct: 97 EEKRAINRLMNRAAASSLAEVALVVFVVDGM-NWTPDDEMVLRKLQSRDDGRKTILAINK 155 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D +K E L E +K ++ +SAT+G +L+ +++P +P + D + Sbjct: 156 VDNIKDKEALFPHLEELSKKFPFDEILPISATQGTNVQRILDMSVASVPESPHYFPEDYV 215 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKL L E+PY V E+++ ++G I ++ VER +QK++ Sbjct: 216 TDRSQKFMASEIVREKLMRFLGDELPYDCTVEIEQFKMMENGVYQINALVLVERETQKRM 275 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++G G+ IK IS A+ ++ + + V L ++VKV+ W D + Sbjct: 276 VIGNKGERIKKISSAARVDMEVLFDNKVFLEMWVKVKSGWADDERA 321 >gi|319787579|ref|YP_004147054.1| GTP-binding protein Era [Pseudoxanthomonas suwonensis 11-1] gi|317466091|gb|ADV27823.1| GTP-binding protein Era [Pseudoxanthomonas suwonensis 11-1] Length = 307 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 12/289 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTLVN VGAKVSIV+++ QTTR + GI + Q++ +DTPG+ Sbjct: 11 RCGSVAVVGRPNVGKSTLVNALVGAKVSIVSNRPQTTRHRLLGIATVPGGQMLLVDTPGL 70 Query: 81 FNAKDSY-----HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 + + ++M R + ++ D LVV++ R + + H K ++ ++L Sbjct: 71 HRQEGRFKASAMSRVMNRTARGAVEDVDAAVLVVEAGRWDEEDSH-AFKVLSDAGIPVVL 129 Query: 136 ILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++NK+D +K + L AE++ F VSA K G + ++ + + LP AP VY Sbjct: 130 VVNKVDRLKDKSTLLPFLAEVSKDRQFA-AVHPVSALKRKGLEALVADVLALLPEAPPVY 188 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 D+I+D E+ RE+L L E+PY++ V E++ E DG++L I VI+VER Sbjct: 189 DEDEITDRSQRFLAGELVREQLMRQLGDELPYATTVEIERFAE--DGALLRIGAVIWVER 246 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G ++ I +A++++ + + V L +V+V++ W D Sbjct: 247 EGQKPIVIGKAGARLREIGSKARQQMERLFGRKVFLETWVRVREGWSDD 295 >gi|295398008|ref|ZP_06808064.1| GTP-binding protein Era [Aerococcus viridans ATCC 11563] gi|294973766|gb|EFG49537.1| GTP-binding protein Era [Aerococcus viridans ATCC 11563] Length = 332 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 164/281 (58%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D +SG VA+VG N GKST +NR VG KV+I++ K QTTR+ ++ + + E+QIVF+DT Sbjct: 33 DGYKSGFVAIVGRPNVGKSTFLNRVVGQKVAIMSDKAQTTRNKIQAVYTTDEAQIVFIDT 92 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI + + M + ++ +++ D + ++V++ + + ++I +R L + Sbjct: 93 PGIHKPHNELGEFMNKSAYQSLEEVDAILMLVNAEEPIGPGDKFVFEKIKNYKTRKFLGV 152 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID V PE L E + + +SA G+ + +++ L LP P Y ++ Sbjct: 153 NKIDKVSPEALAEFMQTIPSPESFDGIIPLSALNGNNVETLIDTLVDLLPTGPQYYPSEF 212 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+D P + +E+ RE++ L+ ++EIP+S V + ++ + + + I V++ SQK Sbjct: 213 ITDHPEYFVVSELIREQILLNTYEEIPHSVAVQVDSMQKDELDRVHVYATIIVDQKSQKG 272 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ IK I +EA+KEI +L ++L L+VK+ K+W Sbjct: 273 IIIGKGGKMIKKIGVEARKEIENLLGSKIYLELWVKIIKNW 313 >gi|262277163|ref|ZP_06054956.1| GTP-binding protein Era [alpha proteobacterium HIMB114] gi|262224266|gb|EEY74725.1| GTP-binding protein Era [alpha proteobacterium HIMB114] Length = 269 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 162/277 (58%), Gaps = 12/277 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++ +AL G TN+GKSTL+N F KVSIV+ K+QTT + ++ K +Q++F+DTPG Sbjct: 2 KTSYIALSGPTNSGKSTLLNCFANKKVSIVSKKIQTTNFNIEFSINFKNTQMIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH-DLLKEIAKRSSRLILILNK 139 + KD+ + +R + ++ ADIV ++D + + + H D +K ++ IL+ NK Sbjct: 62 Y--KDNINDNYLREAIQGLERADIVIFILDINNKFR---HLDKIKNNLEKIKNKILVFNK 116 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID V + +LE+ + + + ++ F +SA K + +LNY+ L +IS Sbjct: 117 IDKVDNDEILEKIKTLDFINKFDEIFYISALKKKNTEKILNYIEKK-SLKETTKFTKRIS 175 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 F +EITRE L ++HKEIPY S +VT+ KK + + Q I V+ + KKI+ Sbjct: 176 KEKFF---SEITREALLFYIHKEIPYKSLIVTDSI--KKGKYLTVNQTIIVKTEAHKKII 230 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 LGKNGQ IK I + ++ ++ +IL++ V+L L +K+ K Sbjct: 231 LGKNGQMIKKIGIYSRSQLEKILKKKVNLFLKLKLSK 267 >gi|304398619|ref|ZP_07380491.1| GTP-binding protein Era [Pantoea sp. aB] gi|304353830|gb|EFM18205.1| GTP-binding protein Era [Pantoea sp. aB] Length = 301 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 153/285 (53%), Gaps = 3/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGEYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I ++V VV+ R + +L ++ ++L +NK+D Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDNKVPVVLAINKVD 127 Query: 142 CVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 ++ + LL + ++ + +SA G D + LP A + D I+D Sbjct: 128 NIQDKSILLPHLQFLSQQMNFLDIVPISAESGKNVDTIAAITRKHLPQADHHFPEDYITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +E+ REKL L E+PYS V E++ + G I +I VER QKK+++ Sbjct: 188 RSQRFMASEMIREKLMRFLGAELPYSVTVEIERFVTNERGGYDIHGLILVEREGQKKMVI 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 G G IK I EA++++ E+ E VHL L+VKV+ W D + Sbjct: 248 GNKGAKIKVIGTEARRDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|304316658|ref|YP_003851803.1| GTP-binding protein Era [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778160|gb|ADL68719.1| GTP-binding protein Era [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 299 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 154/279 (55%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG AL+G TN GKSTL+N + KV+I + K QTTR+ ++GI++ ++ Q+VF+DTPGI Sbjct: 4 KSGFAALIGRTNVGKSTLLNALLEEKVAITSDKPQTTRNTIQGILTGEDYQVVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K ++MI T+ D++ +V+ E+ +++ + + +IL++NKI Sbjct: 64 HKPKHKLSEIMIESVKKTLTEVDLIIYMVEPDAEVGPGDEYIIEHLISIDTPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E + + E + +SA K D + + + +P P + +D I+D Sbjct: 124 DTVPHETVDKTIENFKAQYNFKDILPISALKNKNIDLLKHTIVLYMPEGPQYFPSDYITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 P +EI REK+ +L E+P+ V + +++ IL I I+ E+ S K I+ Sbjct: 184 RPEKFLVSEIIREKILNYLEDEVPHGVYVEVNSMKVRENKDILDIEAFIFCEKESHKAII 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GKNGQ ++ I A+ E+ + Q ++L L+VKV+K W Sbjct: 244 IGKNGQMLRKIGSNARTELESLFGQKIYLDLWVKVKKGW 282 >gi|262273709|ref|ZP_06051522.1| GTP-binding protein Era [Grimontia hollisae CIP 101886] gi|262222124|gb|EEY73436.1| GTP-binding protein Era [Grimontia hollisae CIP 101886] Length = 304 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 158/288 (54%), Gaps = 8/288 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+NR VG K+SI + K QTTR + G+ + Q V++DTPG+ Sbjct: 11 GFIAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHI 70 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V +VD + + +L ++ K +L++NK+D Sbjct: 71 EEKRTINRLMNRAASSSLTDVELVLFLVDGTHWTQ-DDEMVLNKLKKAQLPTVLLVNKVD 129 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK E EI+ K+ FI+ VSA G D V + LP W + + ++ Sbjct: 130 NVKEKGELFPHLQEISQKMDFID-VVPVSAKHGTNIDVVEKLVRKHLPEGEWYFPEEYVT 188 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVERPSQKK 257 D +EI REKL E+PYS V E+++ + DG I +I VER QK+ Sbjct: 189 DRSQRFMASEIIREKLMRFTGDELPYSVTVEIERFDYNPETDG-FEINGLILVERNGQKR 247 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++GK G IKTI EA+ ++ E+ E+ V+L L+VKV+ W D + Sbjct: 248 MVIGKGGDKIKTIGREARLDMEELFERKVYLELWVKVKSGWADDERAL 295 >gi|168187762|ref|ZP_02622397.1| GTP-binding protein Era [Clostridium botulinum C str. Eklund] gi|169294368|gb|EDS76501.1| GTP-binding protein Era [Clostridium botulinum C str. Eklund] Length = 294 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 152/278 (54%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKSTL N +G K+SIV+ + QTTR+ +R +++ + Q+VFLDTPGI Sbjct: 3 KSGFISIIGRPNVGKSTLTNDILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M++ + ++ D++ + E+ +L+ I R + L++NKI Sbjct: 63 HKPRHKLGEYMVKAAETSTDEVDLIVFITTPEGEISKGDELILENIKNRKKPVFLVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E + E + ++ + + +SA K D +LN + +P P Y D I+D Sbjct: 123 DENPQELVAETLQKYSEYMDFAEIIPISARKSKNVDTLLNLMIKYMPEGPKYYPEDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + +EI REK L +E+P+ V ++ K G+ I + E+ S K I++ Sbjct: 183 VQERFVVSEIIREKALKLLSEEVPHGIAVEIISMKQTKRGTYHIDANLLCEKDSHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK GQ +K IS A+++I + L V+L ++VKV+K+W Sbjct: 243 GKGGQKLKKISTYARQDIEKFLNNKVNLKVWVKVKKEW 280 >gi|254302672|ref|ZP_04970030.1| GTP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322864|gb|EDK88114.1| GTP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 296 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 159/283 (56%), Gaps = 8/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ K++Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + M ++ +K DI+ ++D+ + + ++ I + S + IL++NK Sbjct: 62 HKPQHLLGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENSKKPRILLVNK 121 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D + ++ + EI KL +K S G +L L L Y D Sbjct: 122 VDLISDEQKEEKLKEIEEKLGKFDKIIFASGMYSFGISQLLEALDPYLEDGVKYYPDDMY 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYS---SCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 +D+ + EI REK+ L EIP+S + E+ E KKD + IYVER SQ Sbjct: 182 TDMSTYRIITEIVREKILLKTRDEIPHSVAIEIINVERKEGKKDKFDI---NIYVERDSQ 238 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK+G+ +K I +EA+KEI E+L + ++L L+VKV+ DW Sbjct: 239 KGIIIGKDGKMLKEIGMEARKEIEELLGEKIYLGLWVKVKDDW 281 >gi|297626088|ref|YP_003687851.1| GTP-binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921853|emb|CBL56413.1| GTP-binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 316 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 153/297 (51%), Gaps = 16/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG NAGKSTL N VG+K++I + K QTTR VRG++ + Q++ +DTPG+ Sbjct: 15 RSGFVCFVGRPNAGKSTLTNALVGSKIAITSSKPQTTRHAVRGVLHRADGQLIIIDTPGL 74 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILIL 137 + + + L ST D+V LV + + + + L E+AK + L+ I+ Sbjct: 75 SKPRSLLQQRLNDLVRSTWSEVDVVALVFPADEHIGPGDIYLATQLAELAKPPT-LVAIV 133 Query: 138 NKIDCVKPER----LLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D V PER LL A + + L + SA G +V + L S +P P Sbjct: 134 TKTDLVSPERLAKHLLRVARLQDDLAITFAHILPCSARSGSQVGEVADVLLSLMPPGPDY 193 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI---- 248 Y +I+D P AE+ RE + E+P+S V ++ +DG + R ++ Sbjct: 194 YPDGEITDEPDETLVAELIREAALEEVRDELPHSIAVEVDEM-MLRDGRPIDRPLVDIFA 252 Query: 249 --YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQ+ IM+G G+ IK I + A+++I +L VHL L VKV KDW D K Sbjct: 253 SMIVERDSQRGIMVGHAGERIKRIGVRARRQIRALLGTQVHLDLRVKVVKDWQRDAK 309 >gi|251791906|ref|YP_003006626.1| GTP-binding protein Era [Aggregatibacter aphrophilus NJ8700] gi|247533293|gb|ACS96539.1| GTP-binding protein Era [Aggregatibacter aphrophilus NJ8700] Length = 302 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 160/294 (54%), Gaps = 9/294 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 5 QTETYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVD 64 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRL 133 TPG+ K + ++LM R + S I D+V VVD N D +L ++ K + + Sbjct: 65 TPGLHIEKKRALNRLMNRAASSAITDVDLVIFVVDG---THWNDDDEMVLNKLRKTKAPV 121 Query: 134 ILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +L +NKID +K + L EI K F + +SA KG+ D + + +L Sbjct: 122 VLAINKIDNIKNKDDLLPFITEITQKFNFAD-IVPISAEKGNNLDAIEKIVRKSLRPGVH 180 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + D ++D +EI REKL + +E+PYS V E+++ + G+ I +I VE Sbjct: 181 HFPEDYVTDRSQRFMASEIIREKLMRFMGEELPYSVTVEIEQFKVNEHGTYEINGLILVE 240 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G+ G+ +K I EA+ ++ + + VHL L+VKV+ W D + Sbjct: 241 RDGQKKIVIGRKGEKLKKIGTEARLDMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|158336712|ref|YP_001517886.1| GTP-binding protein Era [Acaryochloris marina MBIC11017] gi|158306953|gb|ABW28570.1| GTP-binding protein Era-like protein [Acaryochloris marina MBIC11017] Length = 315 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 158/290 (54%), Gaps = 21/290 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N+ +G K++I + QTTR+ +RGI++ +Q++F+DTPGI Sbjct: 18 KSGFVAIVGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTTPTAQMIFVDTPGI 77 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +++++ + I D+V VVD L + + +A+ ++ +IL LNK+ Sbjct: 78 HKPHHQLGEILVKNARMAIHAVDVVLFVVDCSEPLGGGDRFIAQLLAQTNTPVILGLNKL 137 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGH------------GCDDVLNYLCSTLPL 188 D Q + A + + +++ + A + H + L L Sbjct: 138 DI--------QRKTAQQALTLDQAYKALAKEHHWPVCKFSALTTAKLKSLQRQLIEKLVP 189 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P+ Y D ++D P E+ RE++ L +E+P+S +V E+ +E + ++ I Sbjct: 190 GPYYYPPDLVTDQPERFIMGELIREQILLLTRQEVPHSVAIVIERVDESPKITRIL-ATI 248 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +VERPSQK+I++GK G +K I EA+++I +++ V+L LFVKVQ W Sbjct: 249 HVERPSQKQILIGKKGSMLKAIGTEARQQIQKLIAGKVYLELFVKVQPKW 298 >gi|293394830|ref|ZP_06639120.1| GTP-binding protein Era [Serratia odorifera DSM 4582] gi|291422581|gb|EFE95820.1| GTP-binding protein Era [Serratia odorifera DSM 4582] Length = 302 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 160/290 (55%), Gaps = 15/290 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 K + ++LM R + S+I ++V VV+ + E+ VN LK ++L Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLK------CPVLLA 122 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V K + L A ++ ++ F++ +SA KG D + + LP A + Sbjct: 123 INKVDNVADKGKLLPHIAFLSQQMNFLD-VVPISAEKGMNVDTIAGIVRKLLPEAEHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L +E+PYS V E++ G + +I VER Sbjct: 182 EDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIEQFVANDRGGYDVHGLILVEREG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G IKTI +EA++++ ++ E VHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGSKIKTIGIEARQDMEQMFEAKVHLELWVKVKSGWADDERA 291 >gi|307109793|gb|EFN58030.1| hypothetical protein CHLNCDRAFT_20741 [Chlorella variabilis] Length = 306 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 149/282 (52%), Gaps = 2/282 (0%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G VA++G NAGKSTL+N + K+SIVT K QTTR + GI+SE Q VFLDTPGI Sbjct: 16 AGFVAIIGRPNAGKSTLMNALLQQKLSIVTPKAQTTRHRILGILSEPGFQAVFLDTPGII 75 Query: 82 -NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + ++ M+ ++ AD + +VD+ E + + + + + ++LNK Sbjct: 76 VDKRNKLEDKMMASVQQAVRDADCLLAIVDASHEPQQALAMIQPGDDWKGPPMAVLLNKT 135 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E L + + +SA + D V+ +L LP P +Y D +S+ Sbjct: 136 DLVPAEELEALEAWYRQYCKADAVLPISALESSNLDAVVEWLVGKLPEGPSLYPKDIVSE 195 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIM 259 P F +EI R+ +FL +E+PYS V ++E+ G LI I +E+ QK I+ Sbjct: 196 QPERFFVSEIIRKHIFLQYQQEVPYSVAVEVVNYKERHTRGKDLIEAEIVLEKERQKGII 255 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G+ G +K + ++ EI L +PV+L L VKV++ W D Sbjct: 256 IGRAGSAVKQLGTASRAEIEAFLGRPVYLSLTVKVREGWRKD 297 >gi|268611990|ref|ZP_06145717.1| GTP-binding protein [Ruminococcus flavefaciens FD-1] Length = 297 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 156/282 (55%), Gaps = 4/282 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR+ V + G TNAGKS+L+N VG K++ V+ K QTTR+ + GI + + Q+VF DTPG Sbjct: 2 SRTAFVTIAGRTNAGKSSLLNAIVGEKIASVSSKPQTTRTRITGIRNIDDVQLVFFDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + + M+ ++ D V V+D +++ DLLK + +IL+LNK Sbjct: 62 LHKPVNKLSEHMLNTVRESVSDIDAVVFVMDCTKKINQQELDLLKSMNSSKMPVILVLNK 121 Query: 140 IDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID +K + L A++ +K+ F VS T+ G D V+ + + + + D Sbjct: 122 IDLLKNKDELAPVIADLTSKINF-RAVIPVSVTENSGIDIVIQEIINLSEESVHYFPDDM 180 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 I+D P AE+ REKL + L+ E+P+ V E+ E++D IL I VIY ER S K Sbjct: 181 ITDQPEKVLAAEMIREKLLMLLNDEVPHGIAVGVEEMSEREDKDILDISAVIYCERESHK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K S A+ E+ + + V+L +VKV++DW Sbjct: 241 GIIIGKGGAMLKKASTAARMELEDFFQIKVNLKCWVKVKEDW 282 >gi|254431559|ref|ZP_05045262.1| GTP-binding protein Era [Cyanobium sp. PCC 7001] gi|197626012|gb|EDY38571.1| GTP-binding protein Era [Cyanobium sp. PCC 7001] Length = 353 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 104/316 (32%), Positives = 159/316 (50%), Gaps = 38/316 (12%) Query: 11 EHKDFVQDNS-----RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 E + DN RSG VAL+G N GKSTL+N+ VG KV+I + QTTR+ +R I+ Sbjct: 33 ESARLLGDNPAAAAFRSGFVALIGRPNVGKSTLLNQLVGQKVAITSPVAQTTRNRLRAIL 92 Query: 66 SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----------- 114 + +Q+V LDTPGI + +++ + I D+V L+VD + Sbjct: 93 TTPTAQLVLLDTPGIHKPHHLLGERLVKTARGAIGEVDVVLLLVDGSQRAGRGDGFIVEL 152 Query: 115 ---------LKVNIHDLL---KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIE 162 + +N HDL+ + A S L+ + D PER + L + Sbjct: 153 LRHCRAPVHVALNKHDLVSGDQAAALAQSYRDLLGGRGDVAMPER-------SEPLDW-- 203 Query: 163 KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKE 222 VSA G G +++ L S LP P +Y AD +SD P AE+ RE++ H +E Sbjct: 204 PLHPVSALTGEGTAELVEALSSDLPPGPHLYPADAVSDQPEQLLMAELIREQVLSHTREE 263 Query: 223 IPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEIL 282 +P+S V ++ E + ++ V+ VER SQK I++GK G+ +KTI A+ ++ ++ Sbjct: 264 VPHSVAVSIDRVVEDGPRTAVLATVL-VERSSQKGILIGKGGRMLKTIGQGARLQMEKVF 322 Query: 283 EQPVHLILFVKVQKDW 298 PV+L LFVKV W Sbjct: 323 SGPVYLELFVKVVPGW 338 >gi|254481405|ref|ZP_05094650.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2148] gi|214038568|gb|EEB79230.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2148] Length = 299 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 164/290 (56%), Gaps = 8/290 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R G VA+VG N GKSTL+N +G K+SI + K QTTR V GI +E +SQ++F+DTP Sbjct: 5 SKRCGYVAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHQVLGIKTENDSQVIFVDTP 64 Query: 79 GIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 G+ A++ + ++ M R + S IKH D++ ++D + + +L+++ + +L++ Sbjct: 65 GLHKAEEKAINRYMNRAASSAIKHVDLILFLIDRTAWTEED-QMVLEQVQRTRIPTLLVV 123 Query: 138 NKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK+D ++ + +L E+A++ F E VSA + D + + +P + Y Sbjct: 124 NKVDLLEDKNILLPHLQELADRGEF-EAIVPVSALRQRNVDMLEQEILKYMPESEHFYPE 182 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQI+D AEI REK+ L E+PYS V E++ D I I +I VER Sbjct: 183 DQITDRSQRFLAAEIVREKITRQLGDELPYSVAVEIEEF--GLDNEIAHISALILVEREG 240 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QK+I++G+ G +++I EA+ ++ + + V L L+VKV+ W D + Sbjct: 241 QKRIIIGEKGTRLRSIGTEARVDMERLFDCKVMLRLWVKVKSGWSDDERA 290 >gi|238927458|ref|ZP_04659218.1| GTP-binding protein Era [Selenomonas flueggei ATCC 43531] gi|238884740|gb|EEQ48378.1| GTP-binding protein Era [Selenomonas flueggei ATCC 43531] Length = 299 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 154/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+N +G K++I++ K QTTRS + I++E+++QI+FLDTPG+ Sbjct: 5 KSGFVAVIGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTEEDAQIIFLDTPGV 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D M + + + D+V VVD ++ +LK++A + ++L +NKI Sbjct: 65 HRPQDRLGAYMAKATEGALHGVDVVVFVVDVTEKMGAGERYILKQLAAVQAPVLLAVNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + L ++ +SA + +++ + + LP P Y D ++D Sbjct: 125 DRIPHTESLPVIASYAQMYDFAAIVPISAREEENLTGLIDEIKAKLPEGPQYYPKDMVTD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 P AE+ REK+ E+P++ V E+ + G + IR VIYVER SQK I++ Sbjct: 185 QPERLIIAELIREKVLELTRDEVPHAVAVDVEEMTTRPKGDVYIRAVIYVERTSQKGIVI 244 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G ++TI A+ + +L V+L L+VKV+KDW Sbjct: 245 GARGALLRTIGQRARTDAETLLGTKVYLDLWVKVRKDW 282 >gi|163750601|ref|ZP_02157838.1| GTP-binding protein Era [Shewanella benthica KT99] gi|161329596|gb|EDQ00587.1| GTP-binding protein Era [Shewanella benthica KT99] Length = 335 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 160/287 (55%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI + E Q+VF+DTPG+ Sbjct: 42 GMVAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTVAERQVVFIDTPGLHM 101 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSS--RLILILN 138 + + + ++LM R + S++ +V VVD + + DL L+++ R + +L +N Sbjct: 102 DERRAINRLMNRAAASSLAEVSLVIFVVDGMTWTEDD--DLVLRKLQSRDDGRKTVLAVN 159 Query: 139 KIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D +K + LL E +K ++ +SATKG +L+ +LP A + D Sbjct: 160 KVDNIKNKELLFPYLEALSKKFPFDEILPISATKGTNVQRILDMSIDSLPEAAHFFPEDY 219 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D +EI REKL L E+PY V E+++ ++G I ++ VER +QK+ Sbjct: 220 VTDRSQKFMASEIVREKLMRFLGDELPYDCTVEIEQFKMMENGVYQINALVLVERETQKR 279 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +++G G IK IS A+ ++ + + V L ++VKV+ W D + Sbjct: 280 MVIGNKGDRIKKISSAARVDMEVMFDNKVFLEMWVKVKSGWADDERA 326 >gi|109899453|ref|YP_662708.1| GTP-binding protein Era [Pseudoalteromonas atlantica T6c] gi|109701734|gb|ABG41654.1| GTP-binding protein Era [Pseudoalteromonas atlantica T6c] Length = 300 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 156/286 (54%), Gaps = 7/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N +G KVSI + K QTTR + GI + + Q +++DTPG+ Sbjct: 8 GMIAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRIMGIDTHENRQAIYVDTPGLHI 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++ M R + S+I +V VV+ K N D +L +I + + LI+NK Sbjct: 68 EEKRAINRFMNRAASSSISDVGLVLFVVEG---TKWNEDDQMVLTKIMQSNVPCWLIVNK 124 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D VK E LL + + +K +SA G +++ + + TLP + + + D I Sbjct: 125 SDNVKDKEILLPHLKWLGEQHAFDKIMPISARNGKNVNELRDMVNETLPESEFYFPDDYI 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D AEI REKL E+PYS V E++ ++G I +I VER SQK + Sbjct: 185 TDRSSRFMAAEIIREKLMRFTGDELPYSITVEIEQFMMAENGVYRINGLILVERDSQKSM 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++GK GQ +KTI EA+K++ + + V L L+VKV+ W D + Sbjct: 245 VIGKGGQRLKTIGAEARKDMESLFDTKVFLELWVKVKSGWADDERA 290 >gi|317491019|ref|ZP_07949455.1| GTP-binding protein Era [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920566|gb|EFV41889.1| GTP-binding protein Era [Enterobacteriaceae bacterium 9_2_54FAA] Length = 301 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 162/297 (54%), Gaps = 15/297 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EETTYCGFIAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVN-IHDLLKEIAKR 129 TPG+ K + ++LM R + S+I ++V VV+ + E+ VN + DL Sbjct: 63 TPGLHIEEKRAINRLMNRAASSSIGDVELVIFVVEGTHWTADDEMVVNKLRDL------- 115 Query: 130 SSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + +IL +NK+D V+ + LL + ++ + +SA KG D + + + LP Sbjct: 116 KAPVILAINKVDNVQDKAALLPHIQFLSEQMNFMDVVPISAEKGTNVDTIASIVRKKLPE 175 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 A + + I+D +EI REKL L +E+PYS V E++ G I +I Sbjct: 176 AIHHFPEEYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFVSNDRGGYDINGLI 235 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++G G IKTI +EA++++ + E VHL L+VKV+ W D + Sbjct: 236 LVEREGQKKMVIGNKGSKIKTIGIEARQDMEAMFEAKVHLELWVKVKSGWADDERAL 292 >gi|157374288|ref|YP_001472888.1| GTP-binding protein Era [Shewanella sediminis HAW-EB3] gi|157316662|gb|ABV35760.1| GTP-binding protein Era [Shewanella sediminis HAW-EB3] Length = 335 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 159/298 (53%), Gaps = 3/298 (1%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N D D + G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI ++ Sbjct: 29 NPSSDAKYDVTYCGMVAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGA 88 Query: 70 SQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 Q+VF+DTPG+ K + ++LM R + S++ +V VVD + L K ++ Sbjct: 89 RQVVFIDTPGLHMEEKRAINRLMNRAAASSLAEVSLVIFVVDGMTWTDDDEMVLRKLQSR 148 Query: 129 RSSR-LILILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 R +L +NK+D +K E L E +K ++ +SAT+G +L+ ++ Sbjct: 149 DDGRKTVLAINKVDNIKDKEALFPYLEELSKKFEFDEILPISATQGTNVQRILDMSVESV 208 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQ 246 P +P + D ++D +EI REKL L E+PY V E+++ ++G I Sbjct: 209 PESPHFFPEDYVTDRSQKFMASEIVREKLMRFLGDELPYDCTVEIEQFKMMENGVYQINA 268 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++ VER +QK++++G G IK IS A+ ++ + + V L ++VKV+ W D + Sbjct: 269 LVLVERETQKRMVIGNKGDRIKKISSAARVDMEVLFDNKVFLEMWVKVKSGWADDERA 326 >gi|308177460|ref|YP_003916866.1| GTP-binding protein Era [Arthrobacter arilaitensis Re117] gi|307744923|emb|CBT75895.1| GTP-binding protein Era [Arthrobacter arilaitensis Re117] Length = 320 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 157/297 (52%), Gaps = 15/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG + VG NAGKSTL N VG KV+I + K QTTR +RGIV +++Q++ +DTPG+ Sbjct: 18 RSGFTSFVGRPNAGKSTLTNALVGQKVAITSAKPQTTRHTIRGIVHREDAQLILVDTPGL 77 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + + L T+ D + + ++ ++ + ++A+ + +I ++ K Sbjct: 78 HRPRTLLGQRLNDLVADTLSEVDAIGFCIPANEKIGPGDRFIATQLAQLQRKPIIALVTK 137 Query: 140 IDCVKPERLLEQ----AEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAPW 191 D V E+L +Q AE+ + F E F VSA K ++V N L LP P Sbjct: 138 ADLVDREQLAQQLIAVAEMGTQ-TFGENGFSAIVPVSAVKEFQVEEVANVLVEHLPKGPP 196 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y +++D P +E+ RE + E+P+S VV E+ ++ S I I Sbjct: 197 LYPDGELTDEPEAKMVSELIREAALEGVRDELPHSLAVVVEEMVPREGRSENNPMIDIHV 256 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ++VER SQK I++G+ G ++ + A+K I ++L V+L L VKV KDW DPK Sbjct: 257 SLFVERSSQKAIIIGRGGSRLREVGTNARKGIEKLLGTKVYLDLHVKVAKDWQRDPK 313 >gi|332305562|ref|YP_004433413.1| GTP-binding protein Era [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172891|gb|AEE22145.1| GTP-binding protein Era [Glaciecola agarilytica 4H-3-7+YE-5] Length = 300 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 155/286 (54%), Gaps = 7/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N +G KVSI + K QTTR + GI +E+ Q +++DTPG+ Sbjct: 8 GMIAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRIMGIDTEENRQAIYVDTPGLHI 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++ M R + S+I +V VV+ K N D +L ++ + + LI+NK Sbjct: 68 EEKRAINRFMNRAASSSIADVGLVLFVVEG---TKWNDDDQMVLNKVMQSNVPCWLIVNK 124 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D VK E LL + + +K +SA G +++ + +LP + + + D I Sbjct: 125 SDNVKDKEILLPHLKWLGEQHAFDKIMPISARNGKNVNELREMVNESLPESEFYFPEDYI 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D AEI REKL E+PYS V E++ +G I +I VER SQK + Sbjct: 185 TDRSSRFMAAEIIREKLMRFTGDELPYSITVEIEQFMMADNGVYRINGLILVERDSQKSM 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++GK GQ +KTI EA+K++ + + V L L+VKV+ W D + Sbjct: 245 VIGKAGQRLKTIGAEARKDMENLFDNKVFLELWVKVKSGWADDERA 290 >gi|315634821|ref|ZP_07890103.1| GTP-binding protein Era [Aggregatibacter segnis ATCC 33393] gi|315476373|gb|EFU67123.1| GTP-binding protein Era [Aggregatibacter segnis ATCC 33393] Length = 301 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 159/288 (55%), Gaps = 9/288 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 10 GFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGPYQEIYVDTPGLHI 69 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++LM R + S I D+V VVD N D +L ++ K ++L +NK Sbjct: 70 EEKRAINRLMNRAASSAITDVDLVIFVVDG---THWNDDDEMVLNKLRKTKVPVVLAINK 126 Query: 140 IDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID +K + L EI++K F + +SA KG+ + + N + +L + D Sbjct: 127 IDNIKNKDDLLPFITEISSKFTFTD-IVPISAEKGNNLEVIENIVRKSLRPGGHHFPEDY 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D +EI REKL + +E+PYS V E+++ + G+ I +I VER QKK Sbjct: 186 VTDRSQRFMASEIIREKLMRFMGEELPYSVTVEIEQFKVNERGTYEINALILVERDGQKK 245 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++G G+ +K I EA+ ++ + + VHL L+VKV+ W D + Sbjct: 246 IVIGHKGEKLKKIGTEARLDMERLFDNKVHLELWVKVKSGWADDERAL 293 >gi|90412087|ref|ZP_01220094.1| GTP-binding protein Era [Photobacterium profundum 3TCK] gi|90327065|gb|EAS43444.1| GTP-binding protein Era [Photobacterium profundum 3TCK] Length = 301 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 161/288 (55%), Gaps = 8/288 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+NR VG K+SI + K QTTR + G+ + Q VF+DTPG+ Sbjct: 8 GFIAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVFIDTPGLHI 67 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V +VD + +L ++ K +L++NK+D Sbjct: 68 EEKRTINRLMNRAASSSLTDVELVLFLVDGT-VWTADDEMVLNKLKKSGLPTVLLINKVD 126 Query: 142 CVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK + L ++ K+ F++ +SA G D V + + +P + + D ++ Sbjct: 127 NVKEKGDLFPHLDALSKKMDFVD-VVPISAKSGTNVDAVEKIVRAHIPEGEYYFPEDYVT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVERPSQKK 257 D +EI REKL L +E+PYS V E+++ K DG I +I VER QKK Sbjct: 186 DRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFDYNPKMDG-FDINGLILVERKGQKK 244 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++GKNG+ +K I EA+ ++ ++ E+ V+L L+VKV+ W D + Sbjct: 245 MVIGKNGEKMKVIGREARIDMEDLFERKVYLELWVKVKSGWADDERAL 292 >gi|28899345|ref|NP_798950.1| GTP-binding protein Era [Vibrio parahaemolyticus RIMD 2210633] gi|153839957|ref|ZP_01992624.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ3810] gi|260365942|ref|ZP_05778432.1| GTP-binding protein Era [Vibrio parahaemolyticus K5030] gi|260878964|ref|ZP_05891319.1| GTP-binding protein Era [Vibrio parahaemolyticus AN-5034] gi|260898319|ref|ZP_05906815.1| GTP-binding protein Era [Vibrio parahaemolyticus Peru-466] gi|260899640|ref|ZP_05908035.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ4037] gi|31340053|sp|Q87LP0|ERA_VIBPA RecName: Full=GTPase Era gi|28807581|dbj|BAC60834.1| GTP-binding protein Era [Vibrio parahaemolyticus RIMD 2210633] gi|149746516|gb|EDM57505.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ3810] gi|308085246|gb|EFO34941.1| GTP-binding protein Era [Vibrio parahaemolyticus Peru-466] gi|308090470|gb|EFO40165.1| GTP-binding protein Era [Vibrio parahaemolyticus AN-5034] gi|308110555|gb|EFO48095.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ4037] gi|308113214|gb|EFO50754.1| GTP-binding protein Era [Vibrio parahaemolyticus K5030] Length = 320 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 172/304 (56%), Gaps = 9/304 (2%) Query: 7 TFFNEHKDFVQ-DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 FF H + +N G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ Sbjct: 10 AFFASHGEVSSPENQHCGFIAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVD 69 Query: 66 SEKESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 ++ + Q +++DTPG+ K + ++LM R + S++ ++V +VD K + +L Sbjct: 70 TDGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTK-DDEMVLT 128 Query: 125 EIAKRSSRLILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 ++ K + ++L +NK+D V + E +L AE++ K+ F++ +SA +G D + ++ Sbjct: 129 KLQKSNFPVVLCVNKVDNVQDRNEVMLHMAEMSKKMDFVD-VVPISAKQGKNIDVLRKHV 187 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDG 240 + LP A + + ++D +EI REKL E+PYS V E+++ + DG Sbjct: 188 RNHLPKATHHFPEEYVTDRSQRFMASEIVREKLMRFTGDELPYSVTVEIERFDYNPETDG 247 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I +I VER QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W Sbjct: 248 -FHINALILVERNGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWAD 306 Query: 301 DPKC 304 D + Sbjct: 307 DERA 310 >gi|90407380|ref|ZP_01215565.1| GTP-binding protein Era [Psychromonas sp. CNPT3] gi|90311531|gb|EAS39631.1| GTP-binding protein Era [Psychromonas sp. CNPT3] Length = 300 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 159/285 (55%), Gaps = 5/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G KVSI + K QTTR + GI ++ E Q +F+DTPG+ Sbjct: 6 GLVAIVGRPNVGKSTLINALLGQKVSITSRKAQTTRHRILGIDTQGEYQTIFVDTPGLHV 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I ++V VV+ + +L + + ++L +NKID Sbjct: 66 EEKRAINRLMNRAASSSINDVEMVIFVVEG-THWNEDDEMVLSKFKYLTCPVVLAINKID 124 Query: 142 CVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 V+ + LL E+ + F + +SA KG + + + LP + + + D I+ Sbjct: 125 NVEDKELLLPHLQELGERYNF-KHILPMSAKKGDNIEKIRQWAQEALPESEFYFPEDYIT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL L E+PYS V E+++++ +G + I +I VER QK+++ Sbjct: 184 DRSSRFMASEIVREKLMRFLGDELPYSVTVEIEQFKQQANGLLHINALILVEREGQKRMV 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +G G+ IK IS +A+ ++ + + V+L ++VKV+ W D + Sbjct: 244 IGNKGEKIKAISTQARLDMEALFDAKVYLEVWVKVKSGWADDLRA 288 >gi|297559688|ref|YP_003678662.1| GTP-binding protein Era [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844136|gb|ADH66156.1| GTP-binding protein Era [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 322 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 153/289 (52%), Gaps = 6/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG N GKSTL+N VG KV+I +++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 23 RSGFACFVGRPNVGKSTLMNALVGQKVAITSNRPQTTRRTVRGIVHRPDAQLIIVDTPGL 82 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILNK 139 + + + L ST+ D++ + ++ + + KE+A+++ + ++ ++ K Sbjct: 83 HKPRTLLGERLDSLVRSTLVEVDVIAFCLPANEPIGRGDTYIAKELAEQTNTPVVALVTK 142 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V + + N+L VSA G + V + LCS LP P +Y ++ Sbjct: 143 TDLVDRDAVGRHLMAVNELGDWADIVPVSAQGGFQLETVTDVLCSHLPEGPPLYPDGDLT 202 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQVIYVERPS 254 D P AE+ RE + E+P+S VV ++ E+++ + I +YVER S Sbjct: 203 DEPDEMLVAELVREAALEGVRDELPHSIAVVVDEMYERENTRPGKELVDIYASLYVERSS 262 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++G G ++ + A+K+I +L + V L L V+V KDW DPK Sbjct: 263 QKAIVIGSKGSRLRDVGSRARKQIEALLGRRVFLDLRVRVAKDWQRDPK 311 >gi|229098771|ref|ZP_04229709.1| GTP-binding protein era [Bacillus cereus Rock3-29] gi|228684615|gb|EEL38555.1| GTP-binding protein era [Bacillus cereus Rock3-29] Length = 266 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 145/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID V PE+LLE + KL + +SA Sbjct: 61 NATEGFGRGEEFIIEKLQETKQPVFLVINKIDQVHPEQLLELIDQYRKLHEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ + ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVEALIGAIKKYLPEGPQYYPDNQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VER SQK I++GK G+ +K I A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERASQKGIIIGKQGKMLKEIGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|312196053|ref|YP_004016114.1| GTP-binding protein Era [Frankia sp. EuI1c] gi|311227389|gb|ADP80244.1| GTP-binding protein Era [Frankia sp. EuI1c] Length = 343 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 99/309 (32%), Positives = 158/309 (51%), Gaps = 26/309 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG K++I + + QTTR VRGIV ++Q+V +DTPG+ Sbjct: 28 RSGFACFVGRPNAGKSTLTNALVGTKIAITSGRPQTTRHAVRGIVHRPDAQLVLVDTPGL 87 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 + + + + +T+ D+V + + + +E+++ R +I IL Sbjct: 88 HRPRTLLGERLNDVVRATLSEVDVVGFCAPADEPVGRGDRYIAEELSRLPGRTPVIAILT 147 Query: 139 KIDCVK-PE----RLLEQAEIANKLVFIEKTFMVSATKGHG--------------CDDVL 179 K D VK P+ RLLE +++A+ + + + +G G D + Sbjct: 148 KTDLVKDPDRIGARLLELSQLADFAEIVPVSAVPVPVRGDGRAAGDDRVRAAGHQLDVLA 207 Query: 180 NYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD 239 + L + LPL P +Y +++D P AE+ RE + E+P+S VV E+ ++D Sbjct: 208 DLLVARLPLGPPLYLDGELTDEPERVMVAELVREAALEGVRDELPHSLAVVVEEMLPRED 267 Query: 240 GS-----ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 + + ++VERPSQK I++G G +K + +A+ +I +L PV L L VKV Sbjct: 268 RPAERPLLDVHVNVFVERPSQKAIVIGAGGSRLKDVGTKARAQIEALLGTPVFLDLHVKV 327 Query: 295 QKDWGHDPK 303 KDW DPK Sbjct: 328 AKDWQRDPK 336 >gi|256827190|ref|YP_003151149.1| GTP-binding protein Era [Cryptobacterium curtum DSM 15641] gi|256583333|gb|ACU94467.1| GTP-binding protein Era [Cryptobacterium curtum DSM 15641] Length = 315 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 152/283 (53%), Gaps = 3/283 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V LVG NAGKSTL+N +G KV+I + QTTR R + + Q+V +DTPGI Sbjct: 21 QSGFVTLVGRPNAGKSTLINAIMGKKVAITSDTAQTTRHRFRAVKTTDTFQLVLIDTPGI 80 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D+ + + + + D+V +VD + + + + IA ++ +L++ KI Sbjct: 81 HKPHDALGQELNESAIQALDGIDVVAFLVDGTKPVGTGDEWVSRIIAPIKAKKVLVITKI 140 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + + + Q E A+ L + +SA G G + LN + S LP+ P + AD +D Sbjct: 141 DLIDQDTIDAQMEAASALADWDAKIQLSAVSGEGVEFFLNKMASLLPVGPRWFPADMETD 200 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVERPSQKKI 258 P+ AE REK+ + E+P++ VV ++ E +KD + I+VE SQK I Sbjct: 201 QPLEVVVAEFIREKILRSFYDEVPHAIGVVVDELEYVRRKDLERVF-ATIFVEHESQKGI 259 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ++GK G +K I A+ ++ ++L V+L L VKV+K+W D Sbjct: 260 IIGKRGAALKAIGQAARIDLEQLLGCRVYLDLHVKVKKNWRRD 302 >gi|298369787|ref|ZP_06981103.1| GTP-binding protein Era [Neisseria sp. oral taxon 014 str. F0314] gi|298281247|gb|EFI22736.1| GTP-binding protein Era [Neisseria sp. oral taxon 014 str. F0314] Length = 308 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 160/285 (56%), Gaps = 7/285 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 18 RCGFIAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 77 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N +++ + + + + D V VV++ R + + ++K++ K + +IL++NK Sbjct: 78 QTNHRNALNDRLNQNVTEALSGVDAVVFVVEAMRFTEAD-RTVIKQLPKHTP-VILVVNK 135 Query: 140 IDCVKPERLLEQA---EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 ID K ++ +A E+ + F VSA G G +L L LP + +Y D Sbjct: 136 IDKGKADKYRLEAFIREVGAEFEFAGHE-AVSAKHGLGIARLLERLKPYLPESVPMYPED 194 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D EI REKLF +L +E+PY+ V E++EE+ G I + V++ SQK Sbjct: 195 MVTDKSGRFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEPSGLYRIYIAVLVDKDSQK 254 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK G+ +K IS EA+ ++ ++ + V L ++ KV+ W D Sbjct: 255 AILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWAKVKSGWADD 299 >gi|117619280|ref|YP_855344.1| GTP-binding protein Era [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560687|gb|ABK37635.1| GTP-binding protein Era [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 299 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 158/291 (54%), Gaps = 3/291 (1%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + D + G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E+ Q +++ Sbjct: 1 MTDTTYCGFVAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEENYQTIYV 60 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPG+ K + ++LM R + S++ +V +VD K + +L ++ ++ Sbjct: 61 DTPGLHIEEKRAINRLMNRAATSSLGDVAMVVFMVDGTHWTK-DDEMVLGKLRHLKCPVV 119 Query: 135 LILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L +NKID VK E LL E + + +SA KG + + + LP + Sbjct: 120 LAVNKIDNVKEKEDLLPHLEWLGQQMNFAHILPISAEKGTNVEKIREWAKDLLPENVHFF 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D ++D +EI REKL +E+PYS V E+++ +++G I +I VER Sbjct: 180 PEDYVTDRSSRFMASEIIREKLMRFTGEELPYSVTVEIERFKVEENGLYHIHGLILVERD 239 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G+ IKTI EA+ ++ + + VHL L+VKV+ W D + Sbjct: 240 GQKKMVIGNKGEKIKTIGTEARLDMERLFQNKVHLELWVKVKSGWADDERA 290 >gi|284990195|ref|YP_003408749.1| GTP-binding protein Era [Geodermatophilus obscurus DSM 43160] gi|284063440|gb|ADB74378.1| GTP-binding protein Era [Geodermatophilus obscurus DSM 43160] Length = 305 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 6/293 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q RSG LVG NAGK+TL N VG KV IV+++ QTTR +RG+V Q+V +D Sbjct: 6 QPPYRSGFACLVGRPNAGKTTLTNALVGEKVGIVSNRPQTTRHAIRGVVHRPGGQLVLVD 65 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ + + + + T+ D+V V + + + + +++ + + ++++ Sbjct: 66 TPGLHKPRSLLGRRLNDVVRDTLSEVDVVVFCVPADQPVGTGDRFIARQLREVKAPVVVV 125 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + K D +++ EQ A++LV + VSA +G + + + L LP P +Y + Sbjct: 126 VTKTDAASKKQVAEQLLAASQLVEAAEVVPVSAVRGDQVELLEDLLVGLLPEGPPLYPEE 185 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSILIR--QVIYV 250 Q +D + AE+ RE + +E+P+S V +T + + K+DG L+ +++ Sbjct: 186 QTTDEDVERQIAELVREAALEKVFQEVPHSLAVTIEEMTRRPDPKRDGGELVEVHALLHC 245 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ERPSQK ++LGK GQ IK I EA+ I +L VHL L V V +W DPK Sbjct: 246 ERPSQKPMLLGKGGQVIKAIGSEARPGIEALLGARVHLDLHVTVLGEWQDDPK 298 >gi|213965802|ref|ZP_03393994.1| GTP-binding protein Era [Corynebacterium amycolatum SK46] gi|213951561|gb|EEB62951.1| GTP-binding protein Era [Corynebacterium amycolatum SK46] Length = 319 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 158/286 (55%), Gaps = 3/286 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V++VG N GKSTL N VG K++I ++ +TTR VRG+V + QIV +DTPG+ Sbjct: 27 RSGFVSIVGRPNTGKSTLTNSLVGEKIAITANQPETTRHPVRGVVHRENCQIVVVDTPGL 86 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + + T D+V +VV + ++ + + ++K ++ I++K+ Sbjct: 87 HKPRTLLGERLNDMVQETYSDVDLVAMVVPADEKIGPGDRWIYENVSKGCKNIMGIVSKV 146 Query: 141 DCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V + ++E+ E+ L + +S+ G + +++ + S LP P +Y I+ Sbjct: 147 DKVSRDTIIERLIELQELLGPDAELVPLSSKSGENINTLIDVMASQLPEGPRLYPKGHIT 206 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQKK 257 D + AE+ RE L E+P+S V ++ + ++G + + VIYVER QK Sbjct: 207 DEDLHTRMAELIREAALGGLRDELPHSVAVQIDEVLPNQDREGVLDVHAVIYVERSGQKS 266 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++G++G+ + T +A+KE+ +L Q V+L L VKV KDW DPK Sbjct: 267 ILMGRDGRRMGTTIHKARKELIALLGQNVYLDLRVKVLKDWQSDPK 312 >gi|330828483|ref|YP_004391435.1| GTP-binding protein era [Aeromonas veronii B565] gi|328803619|gb|AEB48818.1| GTP-binding protein era [Aeromonas veronii B565] Length = 299 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 157/291 (53%), Gaps = 3/291 (1%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + D + G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++ Sbjct: 1 MTDTTYCGFVAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEDNYQTIYV 60 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPG+ K + ++LM R + S++ +V +VD K + +L ++ ++ Sbjct: 61 DTPGLHIEEKRAINRLMNRAATSSLGDVAMVVFMVDGTHWTK-DDEMVLGKLRNLKCPVV 119 Query: 135 LILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L +NKID VK E LL E + + +SA KG + + + LP + Sbjct: 120 LAVNKIDNVKEKEDLLPHLEWLGQQMNFAHILPISAEKGTNVEKIREWAKDLLPENVHFF 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D ++D +EI REKL +E+PYS V E+++ +++G I +I VER Sbjct: 180 PEDYVTDRSSRFMASEIIREKLMRFTGEELPYSVTVEIERFKVEENGLYHIHGLILVERD 239 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G+ IKTI EA+ ++ + + VHL L+VKV+ W D + Sbjct: 240 GQKKMVIGNKGEKIKTIGTEARLDMERLFQNKVHLELWVKVKSGWADDERA 290 >gi|239931377|ref|ZP_04688330.1| GTP-binding protein Era [Streptomyces ghanaensis ATCC 14672] gi|291439747|ref|ZP_06579137.1| GTP-binding protein Era [Streptomyces ghanaensis ATCC 14672] gi|291342642|gb|EFE69598.1| GTP-binding protein Era [Streptomyces ghanaensis ATCC 14672] Length = 320 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 158/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 20 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPDAQLILVDTPGL 79 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + +++ + KE+A R + + I Sbjct: 80 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKIGPGDRFIAKELAGIRKTPKVAI 136 Query: 137 LNKIDCVKPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V + L EQ ++L + + VSAT D + + L +P P Sbjct: 137 VTKTDLVDSKALAEQLIAVDRLGKELGITWAEIVPVSATANKQVDLLADLLIPLMPEGPA 196 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 197 LYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIHA 256 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++ERPSQK I++G G+ +K + ++++K+I +L PV L L VKV KDW DPK Sbjct: 257 NLFIERPSQKGIVIGPKGKRLKEVGVKSRKQIEALLGTPVFLDLHVKVAKDWQRDPK 313 >gi|145630696|ref|ZP_01786475.1| GTP-binding protein Era [Haemophilus influenzae R3021] gi|144983822|gb|EDJ91272.1| GTP-binding protein Era [Haemophilus influenzae R3021] Length = 302 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 160/291 (54%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 6 DKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDT 65 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R++ S I D++ VVD + +L ++ + ++L Sbjct: 66 PGLHIEEKRAINRLMNRVASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLA 124 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D +K + L E+++K F +SA +G+ ++ + +L + Sbjct: 125 INKVDNIKNKDDLLPFITELSSKFNFAH-IVPISAQRGNNVHELEKIVRQSLREGVHHFP 183 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 184 EDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVEREG 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 QKKMVIGAGGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|28211641|ref|NP_782585.1| GTP-binding protein Era [Clostridium tetani E88] gi|75541993|sp|Q892S2|ERA_CLOTE RecName: Full=GTPase Era gi|28204083|gb|AAO36522.1| GTP-binding protein era [Clostridium tetani E88] Length = 295 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 155/282 (54%), Gaps = 1/282 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + ++G N GKSTL+N + K+SIV+HK QTTR+ ++ I+++++ QIVF+DTPG+ Sbjct: 3 KSGFITVIGRPNVGKSTLLNNIMKEKLSIVSHKPQTTRNNIQTILTQEDCQIVFVDTPGM 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++++ +K DIV + +L +L+++ + + LI+NKI Sbjct: 63 HKPKHKLGEYMVKVAEEALKGVDIVLFMTTPEGQLGRGDVYILEQLKRIKQPVFLIVNKI 122 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D ++ E + F ++ +SA+K D +L + LP P Y D I+ Sbjct: 123 DENDQGKVAETLKNYHDAYPFFKEIIPISASKDKNVDTLLELMKKYLPEGPKYYPEDMIT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AEI REK L +E+P+ V ++ + G+ I + ER S K I+ Sbjct: 183 DQQERFIVAEIIREKALRLLSEEVPHGIAVEMMTMKKNEKGNYEINATMLCERDSHKGII 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +GKNG +K IS A+++I + L+ V L ++VKV+K+W D Sbjct: 243 IGKNGSMLKKISQYARQDIEKFLQSKVSLKVWVKVKKEWRDD 284 >gi|307718259|ref|YP_003873791.1| GTP-binding protein [Spirochaeta thermophila DSM 6192] gi|306531984|gb|ADN01518.1| GTP-binding protein [Spirochaeta thermophila DSM 6192] Length = 290 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 99/275 (36%), Positives = 152/275 (55%), Gaps = 5/275 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG ++GKSTL+N G KV+I + QTTR+ +RGIV+E+ QIVF+DTPG ++ Sbjct: 7 AIVGRPSSGKSTLLNTLCGRKVAITSPVPQTTRNRIRGIVTEERGQIVFIDTPGYHQSEK 66 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 ++ + +K D + +VDS R + H+L++ + + +++ LNKID P Sbjct: 67 KFNLFLKEQVIEALKEVDEILYLVDSTRSIGEEEHELIELVKQAGKPVVIALNKIDI--P 124 Query: 146 ERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL-PM 203 E E K F + +SA G G +D+ L P +Y + +D P Sbjct: 125 EHHAEGMVPLLKAHFPSAPIVKISAYTGEGLEDLKARLFEAAEEGPQLYPEEFYTDQEPR 184 Query: 204 FHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKN 263 F AEI REK +E+P++ V EE+ D ++ R +I VER SQK I++G+ Sbjct: 185 FRI-AEIIREKAIHQTREELPHALYVEVLDVEERPDETLWARALICVERESQKGIIIGRG 243 Query: 264 GQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G+ IKTI L+++KE++ I E+PV L L VKV W Sbjct: 244 GEKIKTIRLQSEKELSGIFERPVRLDLRVKVVPKW 278 >gi|78185078|ref|YP_377513.1| GTP-binding protein Era [Synechococcus sp. CC9902] gi|78169372|gb|ABB26469.1| GTP-binding protein Era [Synechococcus sp. CC9902] Length = 319 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 99/295 (33%), Positives = 162/295 (54%), Gaps = 9/295 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V D+ RSG +AL+G N GKSTL+N+ VG KV+I + QTTR+ +R I++ +ESQ+V + Sbjct: 13 VPDHYRSGFIALIGRPNVGKSTLLNKLVGEKVAITSPVAQTTRNRLRAILTTEESQMVLV 72 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI + ++ + S I D+V L+++ ++ + ++S +++ Sbjct: 73 DTPGIHKPHHLLGERLVHSARSAIGEVDLVLLLLEGCERPGRGDAFIVNLLKQQSLPVLV 132 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWV 192 LNK D V ++ + A ++L E + V SA G GC ++ + LPL P + Sbjct: 133 ALNKWDLVAADQQDQAAASYDEL-LAETHWPVHRCSAISGDGCRELSVAMAEQLPLGPQL 191 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-----KKDGSILIRQV 247 Y D ++D P E+ RE++ LH +E+P+S V ++ E+ K G + Sbjct: 192 YPPDMVTDQPERVLLGELIREQVLLHTREEVPHSVAVTIDRVEDIPPKGKNPGRTAVLAT 251 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 + VER SQK I++GK G +KTI A+ ++ +++ V+L LFVKV DW P Sbjct: 252 VLVERKSQKGILIGKGGAMLKTIGQGARLQMQTLIDGSVYLELFVKVVPDWRSKP 306 >gi|116072347|ref|ZP_01469614.1| GTP-binding protein Era [Synechococcus sp. BL107] gi|116064869|gb|EAU70628.1| GTP-binding protein Era [Synechococcus sp. BL107] Length = 319 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 163/295 (55%), Gaps = 9/295 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V+D+ RSG +AL+G N GKSTL+N+ VG KV+I + QTTR+ +R I++ +ESQ+V + Sbjct: 13 VRDDYRSGFIALIGRPNVGKSTLLNKLVGEKVAITSPVAQTTRNRLRAILTTEESQMVLV 72 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI + ++ + S I D+V L+++ ++ + ++S +++ Sbjct: 73 DTPGIHKPHHLLGERLVHSARSAIGEVDLVLLLLEGCERPGRGDAFIVNLLKQQSLPVLV 132 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWV 192 LNK D V ++ + A ++L E + V SA G GC ++ + LPL P + Sbjct: 133 ALNKWDLVAADQQDQAAASYDEL-LAETHWPVHRCSAISGDGCRELSAVMAEQLPLGPQL 191 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-----KKDGSILIRQV 247 Y D ++D P E+ RE++ L+ +E+P+S V ++ E+ K G + Sbjct: 192 YPPDMVTDQPERVLLGELIREQVLLYTREEVPHSVAVTIDRVEDIPPKGKNPGRTAVLAT 251 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 + VER SQK I++GK G +KTI A+ ++ +++ V+L LFVKV DW P Sbjct: 252 VLVERKSQKGILIGKGGAMLKTIGQGARLQMQTLIDGSVYLELFVKVVPDWRSKP 306 >gi|160933320|ref|ZP_02080708.1| hypothetical protein CLOLEP_02165 [Clostridium leptum DSM 753] gi|156867197|gb|EDO60569.1| hypothetical protein CLOLEP_02165 [Clostridium leptum DSM 753] Length = 305 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 156/287 (54%), Gaps = 9/287 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q +S +A+VG N GKS+L+N +G KV+IV+ K QTTR+ + G+++++E+Q++F+D Sbjct: 4 QTKQKSAFIAIVGRPNVGKSSLLNAMLGQKVAIVSSKPQTTRTRITGVLTQRETQLIFID 63 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 TPG+ + M+R ++ D LV ++ +E+ +L+K+ S +L Sbjct: 64 TPGLHKPRTRLGDYMVRSVTESVAGVDSCMLVAEAGKEIAPADLELMKKFKSLSLPAVLA 123 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +NKID ++ + +L I F+E+ VSA G G +++ L Sbjct: 124 INKIDLLEDKSVL----IRQITKFMEQFDFDAVVPVSAQTGDGVGGLVDELKKQAMPGAH 179 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + D ++D P EI REKL L KE+P+ V EK +E+++G I I I+ E Sbjct: 180 FFDDDALTDQPERVLAGEIIREKLLRLLDKEVPHGVAVSIEKMKERENGIIDIDATIFCE 239 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R + K I++GK G +K + A+ ++ + ++L L+VKV++DW Sbjct: 240 RDTHKGIIIGKGGAMLKRVGTYARADMEQFFGGKINLKLWVKVKEDW 286 >gi|16331223|ref|NP_441951.1| GTP-binding protein Era [Synechocystis sp. PCC 6803] gi|3334177|sp|Q55526|ERA_SYNY3 RecName: Full=GTPase Era gi|1001399|dbj|BAA10021.1| GTP-binding protein Era [Synechocystis sp. PCC 6803] Length = 315 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 152/282 (53%), Gaps = 7/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N+ VG K++I + QTTR+ ++GI++ SQI+ LDTPGI Sbjct: 21 RSGFVAIVGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGIITTPSSQIILLDTPGI 80 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +++++ + I D+V +VDS L ++ + K +++ LNK Sbjct: 81 HKPHHELGRVLVKNAIQAIHSVDLVVFLVDSSATLGRGDRFVVDLLQKTDGPVVVGLNKQ 140 Query: 141 DCVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D P++ E A+ E F SA G G + + L + L P+ Y D Sbjct: 141 DQQPPDQREELN--ASYETLTENHGWPCFKFSALTGEGLSNFQSALEARLDPGPYYYPPD 198 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D P AE+ RE++ L +E+P+S + EK EE + + + I VER SQK Sbjct: 199 LVTDQPERFIMAELIREQILLLTRQEVPHSVAIAIEKVEETPERTNVF-AAITVERGSQK 257 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++G+ G ++ I A+++I +++ V+L LFVKV+ W Sbjct: 258 GIIIGQKGSMLQAIGTAARQQIQKLISGDVYLKLFVKVEPKW 299 >gi|238897756|ref|YP_002923435.1| GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465513|gb|ACQ67287.1| GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 315 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 163/300 (54%), Gaps = 18/300 (6%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N+ G ++++G N GKSTL+N+ +G K+SI + K QTTR + GI ++ Q +++DT Sbjct: 12 ENTYCGFISILGRPNVGKSTLLNQLLGQKISITSSKAQTTRHRIMGIHTQGSYQAIYIDT 71 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRSS 131 PG+ K + ++ M R + S I + +++ +V+ E+ VN ++ + Sbjct: 72 PGLHIEEKRTINRFMNRAARSAIGNVELIIFMVEGTHWFPDDEMIVN------KLRGVTC 125 Query: 132 RLILILNKIDCVKPERLL--EQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCST 185 ++L +NKID V + +L A + KL F++ F +SA K D + + Sbjct: 126 PVLLAVNKIDHVTDKSILLPHIAFLKRKLSFLDVRFFDLVPISAKKRIQIDRIEQIVRQH 185 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 LP AP +S D I+D +EI REKL L +E+PYS V EK+E G+ I Sbjct: 186 LPEAPHHFSEDHITDRSERFMASEIIREKLMRFLGEELPYSVTVEIEKFEVNVRGAYHIH 245 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +I VER QKKI++G G IKT+ +EA++ + ++ VHL L+VKV+ W D + Sbjct: 246 GLIIVEREGQKKIVIGHRGSKIKTMGIEARQNMQQLFGTKVHLELWVKVKSGWADDERAL 305 >gi|123441364|ref|YP_001005351.1| GTP-binding protein Era [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332162690|ref|YP_004299267.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|189037685|sp|A1JKK4|ERA_YERE8 RecName: Full=GTPase Era gi|122088325|emb|CAL11116.1| putative GTP-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606795|emb|CBY28293.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica Y11] gi|325666920|gb|ADZ43564.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860318|emb|CBX70632.1| GTP-binding protein era homolog [Yersinia enterocolitica W22703] Length = 303 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 158/289 (54%), Gaps = 13/289 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 10 GFIAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 69 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 K + ++LM R + S+I ++V VV+ + E+ VN ++ ++L Sbjct: 70 EEKRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVVN------KLRSLQCPVLLA 123 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D V + +LL + ++ + +SA KG D + + + +P A + Sbjct: 124 INKVDNVTDKTKLLPHIQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEADHHFPE 183 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D +EI REKL L +E+PYS V E++ + G I +I VER Q Sbjct: 184 DYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNIHGLILVEREGQ 243 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 KK+++G G IKTI +EA++++ ++ E VHL L+VKV+ W D + Sbjct: 244 KKMVIGNKGSKIKTIGIEARQDMEQMFEAKVHLELWVKVKSGWADDERA 292 >gi|37527215|ref|NP_930559.1| GTP-binding protein Era [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786649|emb|CAE15713.1| GTP-binding protein era [Photorhabdus luminescens subsp. laumondii TTO1] Length = 302 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 156/285 (54%), Gaps = 5/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E QI+++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQIIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I ++V VV+ + +L ++ ++L +NK+D Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVLNKLRNLRCPVLLAINKVD 127 Query: 142 CV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 V K L ++ ++ F++ M SA KG D + + +P A + D I+ Sbjct: 128 NVTDKTSLLPHIGFLSKQMSFLDVVPM-SAEKGMNVDTIAKIVRGYIPKAAHHFPEDYIT 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL L E+PYS V E++ + G I +I VER QKK++ Sbjct: 187 DRSQRFMASEIIREKLMRFLGDELPYSVTVEIEQFVANERGGYNIHGLILVEREGQKKMV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +G G IKTI +EA++++ + + +HL L+VKV+ W D + Sbjct: 247 IGNKGSKIKTIGIEARQDMERLFDAKIHLELWVKVKAGWADDERA 291 >gi|229104931|ref|ZP_04235588.1| GTP-binding protein era [Bacillus cereus Rock3-28] gi|229117796|ref|ZP_04247161.1| GTP-binding protein era [Bacillus cereus Rock1-3] gi|228665659|gb|EEL21136.1| GTP-binding protein era [Bacillus cereus Rock1-3] gi|228678505|gb|EEL32725.1| GTP-binding protein era [Bacillus cereus Rock3-28] Length = 266 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 145/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID V PE+LLE + KL + +SA Sbjct: 61 NATEGFGRGEEFIIEKLQETKQPVFLVINKIDQVHPEQLLELIDQYRKLHEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ + ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVEALIGAIKKYLPEGPQYYPDNQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VER SQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERASQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|149910154|ref|ZP_01898800.1| GTP-binding protein-like protein; GTPase [Moritella sp. PE36] gi|149806740|gb|EDM66704.1| GTP-binding protein-like protein; GTPase [Moritella sp. PE36] Length = 303 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 167/296 (56%), Gaps = 10/296 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + D + SG +A+VG N GKSTL+NR +G KVSI + K QTTR + GI +E Q V++ Sbjct: 1 MSDMTYSGFIAIVGRPNVGKSTLLNRILGQKVSITSRKPQTTRHRILGIDTEDNRQTVYI 60 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIK--HADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DTPG+ + K + ++LM R + S++K + D V VVD R + +L ++ + Sbjct: 61 DTPGLHIDEKRAINRLMNRAASSSLKDMNVDAVIFVVDGTRWTDDD-EMVLNKLRDINCP 119 Query: 133 LILILNKIDCVKPE--RLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYLCS-TLPL 188 + L +NK D +K + L+ ++ A K F E +SATKG + +L +CS L Sbjct: 120 IYLAINKTDAIKDKDRELMPHLQVLAAKFKFTE-IIPISATKGTNVE-MLRGICSKQLQE 177 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 + + D ++D +EI REKL +E+PYS+ V E+++ ++G+ I +I Sbjct: 178 GDFYFPEDYVTDRSSRFMASEIIREKLMRFTGQELPYSTTVEIEQFKVSENGTYHINALI 237 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 VER +QK++++G G +KTI EA++++ + + V L +VKV+ W D + Sbjct: 238 LVERDTQKRMVIGNKGSKLKTIGTEARRDMETLFDNKVFLECWVKVKSGWADDERA 293 >gi|254230525|ref|ZP_04923896.1| GTP-binding protein Era [Vibrio sp. Ex25] gi|262393271|ref|YP_003285125.1| GTP-binding protein Era [Vibrio sp. Ex25] gi|151936950|gb|EDN55837.1| GTP-binding protein Era [Vibrio sp. Ex25] gi|262336865|gb|ACY50660.1| GTP-binding protein Era [Vibrio sp. Ex25] Length = 320 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 169/292 (57%), Gaps = 8/292 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ ++ + Q +++DT Sbjct: 22 ENQHCGFIAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDT 81 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD K + +L ++ K + ++L Sbjct: 82 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTK-DDEMVLTKLQKSNFPVVLC 140 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V + E +L AE++ K+ F++ +SA +G D + ++ + LP A + Sbjct: 141 VNKVDNVQDRNEVMLHMAEMSKKMDFVD-VVPISAKQGKNIDVLRKHVRNHLPKATHHFP 199 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVER 252 + ++D +EI REKL +E+PYS V E+++ + DG I +I VER Sbjct: 200 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPETDG-FHINALILVER 258 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 259 NGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 310 >gi|254392577|ref|ZP_05007754.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064] gi|294812543|ref|ZP_06771186.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064] gi|197706241|gb|EDY52053.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064] gi|294325142|gb|EFG06785.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064] Length = 317 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/315 (32%), Positives = 163/315 (51%), Gaps = 19/315 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 MG ++ + + V RSG VG NAGKSTL N VG KV+I +++ QTTR VR Sbjct: 1 MGGMSVRTQSSESVP--HRSGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVR 58 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNI 119 GIV E+Q++ +DTPG+ + + + +R +W+ + D++ + + ++L Sbjct: 59 GIVHRPEAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGD 115 Query: 120 HDLLKEIAK-RSSRLILILNKIDCVKPERLLEQAEIANKL---VFIE--KTFMVSATKGH 173 + KE+A + + + I+ K D V L EQ ++L + IE + VS Sbjct: 116 RFIAKELAGIKKTPKVAIVTKTDLVDSRTLAEQLLAVSRLGEELGIEWAEIIPVSVVGDQ 175 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK 233 V + L LP P +Y ++D P AE+ RE + E+P+S VV E+ Sbjct: 176 QVQLVADLLIPLLPEGPALYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEE 235 Query: 234 WEEKKDGS-----ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHL 288 ++D + I +Y+ERPSQK I++G G+ +K + ++++K+I +L PV L Sbjct: 236 MLPREDRPADKPLLDIHANVYIERPSQKGIIIGPKGKRLKEVGVKSRKQIEALLGTPVFL 295 Query: 289 ILFVKVQKDWGHDPK 303 L VKV KDW DPK Sbjct: 296 DLHVKVAKDWQRDPK 310 >gi|228902823|ref|ZP_04066968.1| GTP-binding protein era [Bacillus thuringiensis IBL 4222] gi|228967365|ref|ZP_04128400.1| GTP-binding protein era [Bacillus thuringiensis serovar sotto str. T04001] gi|228792400|gb|EEM39967.1| GTP-binding protein era [Bacillus thuringiensis serovar sotto str. T04001] gi|228856832|gb|EEN01347.1| GTP-binding protein era [Bacillus thuringiensis IBL 4222] Length = 266 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 145/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID + PE+LLE + KL + +SA Sbjct: 61 NAVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ D ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VER SQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERASQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|308187805|ref|YP_003931936.1| GTP-binding protein [Pantoea vagans C9-1] gi|308058315|gb|ADO10487.1| GTP-binding protein [Pantoea vagans C9-1] Length = 301 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 153/285 (53%), Gaps = 3/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGNYQAIYVDTPGLHM 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I ++V VV+ R + +L ++ + ++L +NK+D Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRENKVPVVLAVNKVD 127 Query: 142 CVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 ++ + LL + ++ + +SA G D + LP A + D I+D Sbjct: 128 NIQDKTILLPHLQFLSQQMNFLDIVPISAESGKNVDTIAAITRKHLPQADHHFPEDYITD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +E+ REKL L E+PYS V E++ + G I +I VER QKK+++ Sbjct: 188 RSQRFMASEMIREKLMRFLGAELPYSVTVEIERFVTNERGGYDIHGLILVEREGQKKMVI 247 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 G G IK I EA++++ E+ E VHL L+VKV+ W D + Sbjct: 248 GNKGAKIKVIGTEARRDMEEMFEAKVHLELWVKVKSGWADDERAL 292 >gi|261253899|ref|ZP_05946472.1| GTP-binding protein Era [Vibrio orientalis CIP 102891] gi|260937290|gb|EEX93279.1| GTP-binding protein Era [Vibrio orientalis CIP 102891] Length = 325 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 163/291 (56%), Gaps = 6/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G VA+VG N GKSTL+NR +G K+SI + K QTTR + G+ +E + Q +++DT Sbjct: 27 ENQHCGFVAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDT 86 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + +L ++ K + ++L Sbjct: 87 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDG-THWTADDEMVLTKLQKSNFPVVLC 145 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V+ ++ E+++K+ F++ +SA G D + ++ LP A + Sbjct: 146 VNKVDVVQDRNDVMMHMQEMSSKMDFVD-VVPISAKHGKNIDVLRKHVREHLPKATHHFP 204 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ D I +I VER Sbjct: 205 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERN 264 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 265 GQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 315 >gi|229019524|ref|ZP_04176341.1| GTP-binding protein era [Bacillus cereus AH1273] gi|229025766|ref|ZP_04182165.1| GTP-binding protein era [Bacillus cereus AH1272] gi|229174974|ref|ZP_04302494.1| GTP-binding protein era [Bacillus cereus MM3] gi|228608642|gb|EEK65944.1| GTP-binding protein era [Bacillus cereus MM3] gi|228735474|gb|EEL86070.1| GTP-binding protein era [Bacillus cereus AH1272] gi|228741780|gb|EEL91963.1| GTP-binding protein era [Bacillus cereus AH1273] Length = 266 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 145/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID + PE+LLE + KL + +SA Sbjct: 61 NAVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLYEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ D ++ + LP P Y +Q++D P +E+ REK+ +E+P+S V Sbjct: 121 LDGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIISELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VER SQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERASQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|308048450|ref|YP_003912016.1| GTP-binding protein Era [Ferrimonas balearica DSM 9799] gi|307630640|gb|ADN74942.1| GTP-binding protein Era [Ferrimonas balearica DSM 9799] Length = 302 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 15/299 (5%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 + D + G VA+VG N GKSTL+NR +G KVSI + K QTTR + GI +E Q +F Sbjct: 1 MMTDTTYCGFVAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRIMGIHTEGAYQTIF 60 Query: 75 LDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSS 131 +DTPG+ K + ++LM R + S+I ++V ++V+ + + +L +I + + Sbjct: 61 VDTPGLHVEEKRAINRLMNRAAASSIGDVEMVIMMVEGTK-WTADDQMVLNKIRRGAETR 119 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFM------VSATKGHGCDDVLNYLCST 185 + +L++NK+D +K E+A++ L ++++ F +SA KG ++ Sbjct: 120 KTVLVINKVDQIK-----EKADLIPHLQWLQEQFPFDAIIPMSAGKGDDIQPLITMAQKE 174 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 LP + D ++D AEI REKL L E+PYS V E+++ + G+ I Sbjct: 175 LPECIHYFPEDYVTDRSQRFMAAEIVREKLMRFLGDELPYSINVEIEQFQVDEKGTYHIN 234 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +I VER QK++++G G+ I+TI EA+ ++ ++ + V+L +VKV+ W D + Sbjct: 235 ALILVERSGQKRMVIGNKGEKIRTIGREARMDMEKLFDTKVYLETWVKVKSGWADDERA 293 >gi|116073379|ref|ZP_01470641.1| GTP-binding protein Era [Synechococcus sp. RS9916] gi|116068684|gb|EAU74436.1| GTP-binding protein Era [Synechococcus sp. RS9916] Length = 320 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 158/286 (55%), Gaps = 9/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VAL+G N GKSTLVN+ VG KV+I + QTTR+ +R I++ + +Q++ +DTPGI Sbjct: 19 RSGFVALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTETAQLILVDTPGI 78 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + +++ + + I D V L+++ + ++ + ++ + ++LNK Sbjct: 79 HKPHHLLGERLVQSARAAIGEVDQVLLLLEGCEQPGKGDAFIVNLLQQQRLPVQVVLNKW 138 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D V P +A+ A + + + + SA G GC D++ + + +P P +Y D Sbjct: 139 DRV-PVETRPEADAAYRELLSTTNWPLHHCSALSGEGCPDLVEAISAQMPEGPQLYPPDM 197 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE---KKDGS--ILIRQVIYVER 252 +SD P AE+ RE++ H +E+P+S V E+ E+ K G + + VER Sbjct: 198 VSDQPERLLMAELIREQVLTHTREEVPHSVAVQIERVEDMPAKGQGKSRTAVLATVLVER 257 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GK G +KTI A+ ++ +++ PV+L LFVKV +W Sbjct: 258 KSQKGILIGKGGAMLKTIGQGARLQMQTLIDGPVYLELFVKVVPNW 303 >gi|228910134|ref|ZP_04073954.1| GTP-binding protein era [Bacillus thuringiensis IBL 200] gi|229192509|ref|ZP_04319472.1| GTP-binding protein era [Bacillus cereus ATCC 10876] gi|228591086|gb|EEK48942.1| GTP-binding protein era [Bacillus cereus ATCC 10876] gi|228849651|gb|EEM94485.1| GTP-binding protein era [Bacillus thuringiensis IBL 200] Length = 266 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 145/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID + PE+LLE + KL + +SA Sbjct: 61 NAVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ D ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VER SQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERASQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|157371903|ref|YP_001479892.1| GTP-binding protein Era [Serratia proteamaculans 568] gi|157323667|gb|ABV42764.1| GTP-binding protein Era [Serratia proteamaculans 568] Length = 302 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 160/290 (55%), Gaps = 15/290 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI ++ Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 K + ++LM R + S+I ++V VV+ + E+ VN LK ++L Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLK------CPVLLA 122 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V K + L A ++ ++ F++ +SA KG D + LP A + Sbjct: 123 INKVDNVTDKSKLLPHIAFLSQQMNFLD-VVPISAEKGMNVDTIAAIARKVLPEAEHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L +E+PYS V E++ + G + +I VER Sbjct: 182 DDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNVHGLILVEREG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G IKTI +EA++++ ++ E VHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGAKIKTIGIEARQDMEQMFETKVHLELWVKVKSGWADDERA 291 >gi|119511690|ref|ZP_01630795.1| GTP-binding protein Era [Nodularia spumigena CCY9414] gi|119463675|gb|EAW44607.1| GTP-binding protein Era [Nodularia spumigena CCY9414] Length = 324 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 160/297 (53%), Gaps = 9/297 (3%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 GE++ +F +SG + ++G N GKSTL+N+ VG K++I + QTTR+ +RG Sbjct: 19 GEVSIPQAPPEF-----KSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRG 73 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 I++ E+Q++F+DTPGI +++++ + + I D+V VVD + Sbjct: 74 ILTTPEAQLIFVDTPGIHKPHHQLGQVLVKNARNAIDSVDVVLFVVDGSVACGAGDRFIA 133 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNY 181 + + + +IL LNKID +P + L ++ +V SA G G ++ Sbjct: 134 DLLVRTETPVILGLNKIDQ-QPPNFQPIDDSYQALAETQQWPIVKFSAQTGAGLPELQQL 192 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS 241 L L P+ Y D ++D P E+ RE++ L +E+P+S + ++ +E + Sbjct: 193 LIEHLETGPFYYPPDLVTDQPERFIMGELIREQILLLTREEVPHSVAIAIDRVDESPTIT 252 Query: 242 ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++ I+VER SQK I++GK G +K I EA+++I +++ V+L LFVKVQ+ W Sbjct: 253 RIL-ATIHVERDSQKGILIGKGGSMLKAIGSEAREQIQKLIAGKVYLELFVKVQEKW 308 >gi|228470610|ref|ZP_04055467.1| GTP-binding protein Era [Porphyromonas uenonis 60-3] gi|228307737|gb|EEK16713.1| GTP-binding protein Era [Porphyromonas uenonis 60-3] Length = 295 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 161/290 (55%), Gaps = 2/290 (0%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + +SG V++VG N GKSTL+N VG ++SI+T K QTTR + GIV+ Q+V+ DT Sbjct: 3 EGYKSGFVSIVGNPNVGKSTLMNYLVGERISIITSKAQTTRHRILGIVNSDRMQVVYSDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ + M S ++ AD++ V D+ E + HD ++ + + S +I+++ Sbjct: 63 PGVLQPSYKLQERMRAYSEQALEDADLLLYVTDTMEE-RDKHHDFVERVQRLSCPIIIVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D + + L E + + ++ + VSA + + + LP++P + D Sbjct: 122 NKVDLTEQKHLEELVDYWHSVIPQAEIIPVSALRQFNLAPLKKRIEELLPVSPPYFEQDA 181 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P F +EI REK + H+E+PY+ VV E++ E D I +R VI VER SQK Sbjct: 182 LTDRPARFFVSEIIREKALQYYHQEVPYAVEVVVEEFVESPD-RIDMRCVILVERESQKG 240 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 I++G G IK + + A+K++ ++ +HL L V+V KDW + Q Sbjct: 241 IIIGHKGSAIKRLGISARKDLERFFDKHIHLTLLVRVDKDWRQSDQALTQ 290 >gi|299139980|ref|ZP_07033150.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX8] gi|298597980|gb|EFI54148.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX8] Length = 384 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/328 (32%), Positives = 160/328 (48%), Gaps = 50/328 (15%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV------------SEK 68 RSG ++++G NAGKSTL+N +G K++IVTHK QTTR+ ++G++ Sbjct: 4 RSGFISIIGRPNAGKSTLLNALLGQKLAIVTHKPQTTRTRIQGVLELPVRKKTKTDGGRP 63 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD------------------ 110 SQIV +DTPG+ + K M++ ++ D+V +VD Sbjct: 64 ASQIVLVDTPGVHKPETQLDKRMMQEVHDALESRDVVWFIVDVTHRLPEPKKLLTSEEFA 123 Query: 111 ---------SHRELKVNIHD--LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLV 159 HR D L+ + K +IL+LNKID + LL L Sbjct: 124 EARKIRTLGQHRRALSKAEDDFALQLVKKLDCPVILVLNKIDALPKSALLPLIAHWTSLH 183 Query: 160 FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHL 219 +SA K G + +L+ LP + DQ++D P AE+ REK+ L Sbjct: 184 EFADVIPISAKKNDGLELLLDKSARLLPEGQRYFPKDQLTDQPERFLVAELIREKILLLT 243 Query: 220 HKEIPYSSCVVTEKWEEK------KDGSILIRQV---IYVERPSQKKIMLGKNGQNIKTI 270 +E+PY++ VV E++EE KDG + + ++ I+VER QK I++G G +K I Sbjct: 244 GEEVPYAAAVVIERFEEPASLKKTKDGKLPVTKIAAAIFVERNGQKAIIIGNQGSMLKKI 303 Query: 271 SLEAKKEIAEILEQPVHLILFVKVQKDW 298 A+K+I +L V L LFVKVQ++W Sbjct: 304 GSTARKDIESMLGTRVFLELFVKVQEEW 331 >gi|167623018|ref|YP_001673312.1| GTP-binding protein Era [Shewanella halifaxensis HAW-EB4] gi|167353040|gb|ABZ75653.1| GTP-binding protein Era [Shewanella halifaxensis HAW-EB4] Length = 330 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 158/286 (55%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI ++ Q+VF+DTPG+ Sbjct: 37 GMVAIVGRPNVGKSTLLNKLLGQKISITSKKPQTTRHRIMGIHTDGPRQVVFIDTPGLHM 96 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNK 139 K + ++LM R + S++ +V VVD + +L+++ R + IL +NK Sbjct: 97 EEKRAINRLMNRAAASSLAEVALVIFVVDGM-NWTPDDEMVLRKLQSRDDGRKTILAINK 155 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D +K E L E +K ++ +SAT+G +L+ +++P A + D + Sbjct: 156 VDNIKDKEALFPHLEELSKKFPFDEILPISATQGTNVQRILDMAVASVPEAQHYFPEDYV 215 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKL L E+PY V E+++ ++G I ++ VER +QK++ Sbjct: 216 TDRSQKFMASEIVREKLMRFLGDELPYDCTVEIEQFKMMENGVYQINALVLVERETQKRM 275 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++G G+ IK IS A+ ++ + + V L ++VKV+ W D + Sbjct: 276 VIGNKGERIKKISSAARVDMEVLFDNKVFLEMWVKVKSGWADDERA 321 >gi|149194255|ref|ZP_01871352.1| GTP-binding protein Era [Caminibacter mediatlanticus TB-2] gi|149135430|gb|EDM23909.1| GTP-binding protein Era [Caminibacter mediatlanticus TB-2] Length = 293 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 160/291 (54%), Gaps = 11/291 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G NAGKSTL+N +G K+++V+ K +R V IV + QI+ LDTPG+ Sbjct: 3 KSGFVGIIGKPNAGKSTLLNWLLGEKIALVSPKANASRKRVNAIVMHNDDQIILLDTPGL 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + +K M++ + + +D+V + D +L+ ++ E+ K++ I++L K Sbjct: 63 HEKEKLLNKFMLKEALKALSDSDLVLFLADVRDDLEG--YEWFLELNKKNIPHIVVLTKT 120 Query: 141 DCVKPE----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D V E ++ E +I LV I +SA +G G +++L+ + LP P+ Y + Sbjct: 121 DLVNEEEVKNKIEEYKKIGKALVIIP----ISAIEGKGKEELLDEIVKYLPEHPYYYDPE 176 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 IS + E+ RE LF L EIPY + ++ EK EE ++ + +I VERPSQK Sbjct: 177 IISTENIRDIYKELIREALFEKLGDEIPYQTDILIEKIEEFENLDKIYATII-VERPSQK 235 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +++GKNG+ IK I A+K + + ++L L+VKV +W + K + Sbjct: 236 GMIIGKNGRKIKEIGTYARKLLENFSGKKIYLELYVKVVPNWTKNKKMLEE 286 >gi|301511106|ref|ZP_07236343.1| GTP-binding protein Era [Acinetobacter baumannii AB058] Length = 297 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 158/290 (54%), Gaps = 14/290 (4%) Query: 29 GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-DSY 87 G N GKSTL+N +G K+SI + K QTTR + GI S ++ Q V++DTPG+ + + Sbjct: 1 GRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKEVRAI 60 Query: 88 HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPER 147 +K+M R + S ++ ++V V+D+H+ + N +L+++ +IL++NK D +R Sbjct: 61 NKMMNRAAHSALRDVNLVLFVIDAHKWTQ-NDDLVLEKLKNADMPVILVINKADTFGDKR 119 Query: 148 -LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHF 206 +L + KL+ + VSA +G + + + LP P +YS DQI+D Sbjct: 120 EILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSERFL 179 Query: 207 TAEITREKLFLHLHKEIPYSSCV-----------VTEKWEEKKDGSILIRQVIYVERPSQ 255 +EI REK+ L +E+PY V V EK K I I+V+RP Q Sbjct: 180 ASEIIREKIMRQLGEELPYDLTVQIESFKTEEETVNEKTGRLKPACTYIDATIFVDRPGQ 239 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++G+ G +KTI ++A+K++ ++ EQ + L L+VKV+ W D + Sbjct: 240 KAIVIGEKGAKLKTIGMDARKDMEKMFEQKIMLTLWVKVKGGWSDDERAL 289 >gi|296130043|ref|YP_003637293.1| GTP-binding protein Era [Cellulomonas flavigena DSM 20109] gi|296021858|gb|ADG75094.1| GTP-binding protein Era [Cellulomonas flavigena DSM 20109] Length = 306 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 157/302 (51%), Gaps = 25/302 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG LVG N GKSTL N VG KV+I + + QTTR +VRGIV +++Q+V +DTPG+ Sbjct: 4 RSGFACLVGRPNTGKSTLTNALVGQKVAITSGRPQTTRHVVRGIVHREDAQLVLVDTPGL 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIV--CLVVDSHRELKVNIHDLLKEIAKRSSRL----- 133 + + + L T+ D++ CL D K+ D + IA++ +RL Sbjct: 64 HRPRTLLGERLNDLVRDTLTEVDVIGFCLPADE----KIGPGD--RFIAEQLARLAPPGG 117 Query: 134 -----ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + I+ K D V RL EQ ++L VS+ G+ D + + L + LP Sbjct: 118 SGTPVVAIVTKTDTVPRARLAEQLLAVDQLGDWADIVPVSSQAGYQVDTLADVLVAHLPE 177 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGS----- 241 P +Y +++D P AE+ RE + E+P+S VV ++ E++ G+ Sbjct: 178 GPALYPEGELTDEPEHVMVAELVREAALEGVRDELPHSLAVVVDEIVPREQRPGTDGRPL 237 Query: 242 ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + +R ++VER SQK I++G+ G ++ + A+ +I +L V L L VKV KDW D Sbjct: 238 LDVRVHLFVERDSQKAIVIGRGGARLRDVGTRARTQIEALLGARVFLDLHVKVAKDWQRD 297 Query: 302 PK 303 PK Sbjct: 298 PK 299 >gi|326441004|ref|ZP_08215738.1| GTPase Era [Streptomyces clavuligerus ATCC 27064] Length = 314 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 156/297 (52%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG KV+I +++ QTTR VRGIV E+Q++ +DTPG+ Sbjct: 14 RSGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPGL 73 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L + KE+A + + + I Sbjct: 74 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDRFIAKELAGIKKTPKVAI 130 Query: 137 LNKIDCVKPERLLEQAEIANKL---VFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V L EQ ++L + IE + VS V + L LP P Sbjct: 131 VTKTDLVDSRTLAEQLLAVSRLGEELGIEWAEIIPVSVVGDQQVQLVADLLIPLLPEGPA 190 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 191 LYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIHA 250 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + ++++K+I +L PV L L VKV KDW DPK Sbjct: 251 NVYIERPSQKGIIIGPKGKRLKEVGVKSRKQIEALLGTPVFLDLHVKVAKDWQRDPK 307 >gi|306821539|ref|ZP_07455139.1| GTP-binding protein Era [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550433|gb|EFM38424.1| GTP-binding protein Era [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 316 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 163/284 (57%), Gaps = 7/284 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N + G V++VG +N GKSTL+N +G K++I + K QTTRS ++GI +++ESQI+FLDTP Sbjct: 20 NCKVGFVSIVGRSNVGKSTLLNAIIGEKIAITSDKPQTTRSRIKGIYNDEESQIIFLDTP 79 Query: 79 GIFNAKD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 G+ K+ SY + LS ST AD++ VVD ++ H++++ + K IL Sbjct: 80 GVQKPKNKLGSYMAKEVSLSSST---ADVIVYVVDESEKIGRLDHNIIENLKKTKQPKIL 136 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +LNKID + +++ + ++ +++ + + A K +++ + L + + Sbjct: 137 VLNKIDKLSEDKIFDIIKMYDEIGIFDDIVPICAIKKRNVVELIKTIKKYLVYSAKFFPD 196 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVIYVERPS 254 D +D +EI REK+ + ++EIP+ + V V + ++ I I +IY ER S Sbjct: 197 DMTTDQSNKVMISEIIREKILNYTNQEIPHGTAVEVVRIVDHQEKNMIEISIIIYCERDS 256 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 KKI++GKNG+ +K I A+ E+ EI V L +VKV+++W Sbjct: 257 HKKIIIGKNGRKLKGIGKAARVELEEIFGCKVFLETWVKVKENW 300 >gi|313679135|ref|YP_004056874.1| GTP-binding protein era [Oceanithermus profundus DSM 14977] gi|313151850|gb|ADR35701.1| GTP-binding protein Era [Oceanithermus profundus DSM 14977] Length = 300 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 155/294 (52%), Gaps = 11/294 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + + SG VA++G N GKSTL+N+ +G KV+ ++ K QTTR VRGI +E QIVF+DT Sbjct: 6 ERTHSGFVAILGKPNVGKSTLLNQMLGVKVAPISPKPQTTRKSVRGIYTEGNRQIVFVDT 65 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRL 133 PG+ D+ + R + D+V +VD E ++ L + K+ + Sbjct: 66 PGLHKPADALGDYINRQVTEALSDVDVVLWLVDLRHPPTPEDELVARTLEPLVGKKP--V 123 Query: 134 ILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +L+ NK D K P+ L + K +SA + + + LP+ P+ Sbjct: 124 LLVGNKADAAKYPDEALAAYAALLPGAEVRK---ISALSERDVAKLRAEILALLPVGPFF 180 Query: 193 YSADQI-SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 Y D SD P+ + AE RE++ L +EIPY+ V E+ E+++G++ V+YVE Sbjct: 181 YPPDHAKSDQPIEDWIAETIREEVMKRLRQEIPYAVAVKVEEVAERENGTLYAHAVLYVE 240 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R + K I++GK G+ +K + A+K++ L +PV L L VKV +W DP+ Sbjct: 241 REAHKPILIGKGGRMLKELGRAARKQLELFLNRPVFLDLEVKVYPNWRKDPEAL 294 >gi|40063137|gb|AAR37984.1| GTP-binding protein Era [uncultured marine bacterium 561] Length = 300 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 157/289 (54%), Gaps = 8/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G A++G N GKSTL+N +G K+SI + K QTTR V GI ++ Q+VF+DTPG+ Sbjct: 7 RCGYAAIIGRPNVGKSTLLNYALGQKISITSRKPQTTRHQVMGIYTDSGDQVVFVDTPGM 66 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILN 138 + ++ M R + S + D+V VVD +R + DL+ E + + + + L++N Sbjct: 67 HLEQGKAINRYMNRAASSALADVDLVLFVVDRNRWTSED--DLVLEALQHTETPVALVIN 124 Query: 139 KIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID ++ + LL E + F +SA + ++ Y+ + +P + DQ Sbjct: 125 KIDRLEDQAVLLPWTESIRAKYGFDAIFPISALRQANLPALMTYIRNKMPSGVHFFPEDQ 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AE+ REK+ L E+PY++ V E + K DG +L I +IYVER QK Sbjct: 185 VTDRSERFLAAELIREKIVRQLGDEMPYTTAVEIESF--KLDGKLLRIDALIYVERQGQK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 KI++G+ G +++I EA+K++ V L L+VKV+ W D + Sbjct: 243 KIVIGEGGSRLRSIGTEARKDMEMAFSGKVMLKLWVKVKSGWSDDERAL 291 >gi|289705005|ref|ZP_06501418.1| GTP-binding protein Era [Micrococcus luteus SK58] gi|289558264|gb|EFD51542.1| GTP-binding protein Era [Micrococcus luteus SK58] Length = 321 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG V+LVG NAGKSTL N VG KV+I + K QTTR +RGIV ++ Q+V +DT Sbjct: 12 DGFRSGFVSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVHREDFQLVLVDT 71 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 PG+ + + + L T+ D V + + + + + ++++ + ++ + Sbjct: 72 PGLHRPRTLLGERLNDLVAETLNEVDAVGMCLPADEAIGPGDRFIAQQLSYLHRTPVVAV 131 Query: 137 LNKIDCVKPERLLEQ----AEIANKLVFIEK-------TFMVSATKGHGCDDVLNYLCST 185 + K D V PE+L+ Q + ++++ E VSA G DDVL Sbjct: 132 VTKTDKVGPEQLMAQLVAVTALGDEVLGPENGGEGFAAVVPVSAVAGRQVDDVLGVFAGL 191 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS---- 241 LP P +Y +++D P AE+ RE + E+P+S VV E+ ++D Sbjct: 192 LPAGPPLYPDGELTDEPEAVMVAELIREAALEGVRDELPHSVAVVVEEMSLREDRPADRP 251 Query: 242 -ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + + ++VER SQK I++GK G ++ I +A+ I +L VHL L VKV K+W Sbjct: 252 LMDVWANVFVERDSQKGIIIGKGGSRLREIGAQARAGIERMLGTKVHLDLRVKVAKEWQR 311 Query: 301 DPK 303 DPK Sbjct: 312 DPK 314 >gi|322436559|ref|YP_004218771.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX9] gi|321164286|gb|ADW69991.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX9] Length = 352 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 50/329 (15%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV--------------- 65 RSG V+++G NAGKSTL+N +G K++IVTHK QTTR+ + G++ Sbjct: 4 RSGFVSIIGRPNAGKSTLLNALLGQKLAIVTHKPQTTRTRIHGVLEVPAKKKTKVGAIET 63 Query: 66 -SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLL 123 +QIV +DTPGI K M++ ++ + V +VD +HR + + ++ Sbjct: 64 AGHPAAQIVLVDTPGIHKPDTQLDKRMMQEVHDALESRNAVLFIVDVTHR---LPVAEVP 120 Query: 124 KEIAKRSSRL---------------------ILILNKIDCVKPERLLEQAEIANKLVFIE 162 E K + R+ IL+LNKID + P ++ + L Sbjct: 121 GEKPKITGRMTLSAAEDDFSLQLVKKLDCPVILLLNKIDQISPAEIMPLIAHWSGLYKFA 180 Query: 163 KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKE 222 + VSA K D +L+ + + LP + +Q++D P AE+ REK+ L +E Sbjct: 181 EIIPVSARKKINLDLLLDKVVAHLPEGQRYFPKEQLTDQPERFLVAELIREKILLLTGEE 240 Query: 223 IPYSSCVVTEKWEEKK------DGSILIRQV---IYVERPSQKKIMLGKNGQNIKTISLE 273 +PYS+ VV E++EE K DG + + ++ I+ ER QK I++GK G +K I Sbjct: 241 VPYSTAVVIERFEEPKSLKKLADGRLPVTKIAAAIFCERTGQKAILIGKQGAMLKEIGSA 300 Query: 274 AKKEIAEILEQPVHLILFVKVQKDWGHDP 302 A+K+I +L V L LFVKVQ++W P Sbjct: 301 ARKDIEGLLGTRVFLELFVKVQEEWRSKP 329 >gi|197334668|ref|YP_002156885.1| GTP-binding protein Era [Vibrio fischeri MJ11] gi|197316158|gb|ACH65605.1| GTP-binding protein Era [Vibrio fischeri MJ11] Length = 322 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 165/295 (55%), Gaps = 8/295 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V DN G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ ++ + Q +++ Sbjct: 22 VSDNQHCGFIAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYV 81 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPG+ K + ++LM R + S++ ++V +VD + +L ++ K + Sbjct: 82 DTPGLHIEEKRAINRLMNRAANSSLSDVNLVLFLVDG-THWTPDDEMVLNKLKKSEFPTV 140 Query: 135 LILNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L++NK+D VK ++ + E+ K+ F++ +SA G D V + LP A Sbjct: 141 LLVNKVDNVKDKKDVMTHLQEMTEKMDFVD-VVPISAKTGSNVDVVHKLVREHLPKAVHH 199 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYV 250 + + ++D +EI REKL +E+PYS V E+++ K DG I +I V Sbjct: 200 FPEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIERFDYNPKMDG-FHINGLILV 258 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++GKNG+ IKTI EA+ ++ + ++ V+L L+VKV+ W D + Sbjct: 259 ERHGQKKMVIGKNGEKIKTIGREARIDMEGLFDRKVYLELWVKVKSGWADDERAL 313 >gi|29832138|ref|NP_826772.1| GTP-binding protein Era [Streptomyces avermitilis MA-4680] gi|29609256|dbj|BAC73307.1| putative GTP-binding protein Era/ThdF family [Streptomyces avermitilis MA-4680] Length = 330 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 158/299 (52%), Gaps = 17/299 (5%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R+G VG NAGKSTL N VG KV+I ++ QTTR VRGIV ++Q++ +DTP Sbjct: 28 DHRAGFACFVGRPNAGKSTLTNALVGQKVAITANQPQTTRHTVRGIVHRPDAQLILVDTP 87 Query: 79 GIFNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLI 134 G+ + + + +R +W+ + D++ + ++ +L + KE+A + + I Sbjct: 88 GLHKPRTLLGERLNDIVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELASIKKTPKI 144 Query: 135 LILNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 I+ K D V + L EQ ++ +L F + VSA D + + + LP Sbjct: 145 AIVTKTDLVDGKTLAEQLIAIDQLGQELGFEWAEIIPVSAVGDKQVDLLADLIVPLLPEG 204 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILI 244 P +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 205 PALYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMIPREDRPADKPLLDI 264 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + ++++K+I +L PV L L VKV KDW DP+ Sbjct: 265 HAFVYIERPSQKGIIIGPKGKRLKEVGIKSRKQIEALLGTPVFLDLHVKVAKDWQRDPR 323 >gi|119897934|ref|YP_933147.1| GTP-binding protein Era [Azoarcus sp. BH72] gi|119670347|emb|CAL94260.1| probable GTP-binding protein [Azoarcus sp. BH72] Length = 304 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 163/291 (56%), Gaps = 13/291 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL+NR +G K+SIV+ K QTTR V GI++ + +Q VF+DTPG Sbjct: 15 RTGFVAIVGRPNVGKSTLLNRLIGQKISIVSSKAQTTRHRVTGILTNEGAQFVFVDTPGF 74 Query: 81 FNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +++ ++ M R + D+V V+++ R + + L E+ ++++L++NK Sbjct: 75 QTQHRNALNRSMNRTVSQVLGDVDLVFFVIEAGRFGEDDRKVL--EVIPADAQVVLVINK 132 Query: 140 IDCVKPE-RLL---EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +D +K + RLL +Q A + V I +SA +G + ++ LP +Y Sbjct: 133 VDQLKDKSRLLPFIDQVRAAREFVEI---VPLSAERGSNVEALVGAATPLLPEGAPMYEE 189 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPS 254 D+I+D AE REKLF L E+PY V EK+E +G++ I + V++ Sbjct: 190 DEITDRSERFLAAEFLREKLFRLLGDELPYGIAVEIEKFE--TEGNLRRIHAAVIVDKAG 247 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++GK G+ +K +S EA+ E+ ++ + V L ++VKV+ W D + Sbjct: 248 HKGIVIGKGGEKLKRVSTEARVELEKLFDGKVFLEVWVKVKSGWADDERAL 298 >gi|119503989|ref|ZP_01626070.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2080] gi|119459992|gb|EAW41086.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2080] Length = 300 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 157/289 (54%), Gaps = 8/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G A++G N GKSTL+N +G K+SI + K QTTR V GI ++ Q+VF+DTPG+ Sbjct: 7 RCGYAAIIGRPNVGKSTLLNYALGQKISITSRKPQTTRHQVMGIYTDSGDQVVFVDTPGM 66 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILN 138 + ++ M R + S + D+V VVD +R + DL+ E + + + + L++N Sbjct: 67 HLEQGKAINRYMNRAASSALADVDLVLFVVDRNRWTSED--DLVLEALQHTETPVALVIN 124 Query: 139 KIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID ++ + LL E + F +SA + ++ Y+ + +P + DQ Sbjct: 125 KIDRLEDQGVLLPWTESIRAKYGFDAIFPISALRQANLPALMTYIRNKMPSGVHFFPEDQ 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AE+ REK+ L E+PY++ V E + K DG +L I +IYVER QK Sbjct: 185 VTDRSERFLAAELIREKIVRQLGDEMPYTTAVEIESF--KLDGKLLRIDALIYVERQGQK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 KI++G+ G +++I EA+K++ V L L+VKV+ W D + Sbjct: 243 KIVIGEGGSRLRSIGTEARKDMEMAFSGKVMLKLWVKVKSGWSDDERAL 291 >gi|257093154|ref|YP_003166795.1| GTP-binding protein Era [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045678|gb|ACV34866.1| GTP-binding protein Era [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 294 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 165/291 (56%), Gaps = 13/291 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A++G N GKSTL+N +G K+SIV+ + QTTR + GI++ ++Q VF+DTPG Sbjct: 5 RSGQIAIIGRPNVGKSTLLNALIGEKLSIVSRRAQTTRHRIIGILTRADTQYVFVDTPG- 63 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILIL 137 F + ++ +++M R + D+V VV++ R + D ++++ LI+++ Sbjct: 64 FQTRYGNALNQVMNRGVRQALAEVDVVLFVVEAGR---FDERDRAVRQLVPSDCPLIIVV 120 Query: 138 NKIDCVKPE-RLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NKID +K + RLL A++A + F VSAT+G D++L LP +++ Sbjct: 121 NKIDQLKDKARLLPFLADLAREGDF-AAIVPVSATRGAQLDELLAETRKHLPNNEFLFGE 179 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPS 254 D+I+D AE REKLF + E+PY++ V EK+ DG + I I V+R Sbjct: 180 DEITDRSERFLAAEYIREKLFRLIGDELPYAATVEVEKF--VVDGELRRISAAIVVDREG 237 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++G G+ +K I+ EA++++ + PV L +FVKV+ W D + Sbjct: 238 HKAIIIGSGGETVKRIASEARQDMERMFGGPVFLEVFVKVKSGWADDERLL 288 >gi|152978262|ref|YP_001343891.1| GTP-binding protein Era [Actinobacillus succinogenes 130Z] gi|150839985|gb|ABR73956.1| GTP-binding protein Era [Actinobacillus succinogenes 130Z] Length = 309 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 163/296 (55%), Gaps = 11/296 (3%) Query: 16 VQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + +N+ S C +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q V Sbjct: 8 LSENAESYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGPYQAV 67 Query: 74 FLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRS 130 ++DTPG+ K + ++LM R + S I D++ VVD N D +L ++ + Sbjct: 68 YVDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG---THWNEDDEMVLNKLRQAK 124 Query: 131 SRLILILNKIDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + ++L +NKID VK E L E++ K F + +SA +G+ + + +L Sbjct: 125 APVVLAINKIDNVKNKDELLPFITELSGKFNFAD-IVPISAQRGNNVHKLQEIVRCSLKP 183 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 + D I+D +EI REKL + +E+PYS V E+++ + G I +I Sbjct: 184 GIHHFPEDYITDRSQRFMASEIIREKLMRFMGEELPYSVTVEIEQFKLNERGVYEINGLI 243 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 VER QKK+++G+ GQ IK I EA++++ + + VHL L+VKV+ W D + Sbjct: 244 LVEREGQKKMVIGQGGQKIKVIGTEARQDMERLFDNKVHLELWVKVKSGWADDERA 299 >gi|221194854|ref|ZP_03567911.1| GTP-binding protein Era [Atopobium rimae ATCC 49626] gi|221185758|gb|EEE18148.1| GTP-binding protein Era [Atopobium rimae ATCC 49626] Length = 307 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 156/300 (52%), Gaps = 7/300 (2%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 M ++ +EH +SG VALVG + GKSTL+N + K++I + QTTR +R Sbjct: 1 MADLPVMSEHP------FKSGFVALVGRPSVGKSTLLNACLKEKIAITSPVAQTTRRRLR 54 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 G+V+ Q+V +DTPG+ KD+ K + + + + AD V +VD+ + + + Sbjct: 55 GVVNGPNFQLVIIDTPGLHKPKDALGKELNKTALGELNDADCVAFLVDATKPVGRGDEWV 114 Query: 123 LKEI-AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 K + A R+S +L++ K D E++ Q E A KL + ++SAT+ + Sbjct: 115 AKHVSAARASYKLLVITKADLADQEKVSAQLEAAQKLGHFDDVLVLSATEDFNVQAFVAR 174 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS 241 + LP P + D D AE REKL +L +E+P+S VV +K E D Sbjct: 175 VAEHLPEGPKWFPDDMDVDASDEDLVAEFIREKLLHNLRQEVPHSIGVVCDKLEFLSDTH 234 Query: 242 ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I I VER SQK I++G+ G IK I ++A+K++ ++ V+L L V+VQ W D Sbjct: 235 ASIAATILVERESQKGIVVGQGGSMIKRIGIQARKDLEKLFNCSVYLDLQVRVQPQWRKD 294 >gi|315185423|gb|EFU19195.1| GTP-binding protein Era [Spirochaeta thermophila DSM 6578] Length = 290 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/275 (36%), Positives = 153/275 (55%), Gaps = 5/275 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG ++GKSTL+N G KV+I + QTTR+ +RGIV+E+ QIVF+DTPG +++ Sbjct: 7 AIVGRPSSGKSTLLNTLCGRKVAITSPVPQTTRNRIRGIVTEERGQIVFIDTPGYHHSEK 66 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 ++ + +K D + +VDS R + H+L++ + + +++ LNKID P Sbjct: 67 KFNLFLKEQVIEALKEVDEILYLVDSTRSVGEEEHELIELVKQAGKPVVIALNKIDI--P 124 Query: 146 ERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL-PM 203 E E K F + +SA G G +++ L P +Y + +D P Sbjct: 125 EHHAEGMVPLLKAHFPSAPIVKISAYTGEGLEELKARLFEAAEEGPQLYPEEFYTDQEPR 184 Query: 204 FHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKN 263 F AEI REK +E+P++ V EE+ D ++ R +I VER SQK I++GK Sbjct: 185 FRI-AEIIREKAIHQTREELPHALYVEVLDVEERPDETLWARALICVERESQKGIIIGKG 243 Query: 264 GQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G+ IKTI L+++KE++ I E+PV L L VKV W Sbjct: 244 GEKIKTIRLQSEKELSGIFERPVRLDLRVKVVPKW 278 >gi|124515730|gb|EAY57239.1| GTP-binding protein (Era) [Leptospirillum rubarum] Length = 312 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 155/293 (52%), Gaps = 9/293 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SRSG V+LVG N+GKSTLVN VG K++ + QTTR++++GI + QIVF DTPG Sbjct: 14 SRSGFVSLVGLPNSGKSTLVNAIVGEKIAATSPVAQTTRTLIQGIHTTTRGQIVFYDTPG 73 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLI 134 ++++LM ++ + AD+V VV ++++ LL + R L+ Sbjct: 74 FHRLSHAFNQLMGTVAREALLSADVVVWVVSLDPLPGPQDVEKMRQILLPALGGRP--LV 131 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 + K+D KP+ ++ + K F + VS K D LN L LP V+ Sbjct: 132 IAATKMDRAKPQGMIPRLLEIEKWGFPGEIIPVSGLKEKNLDRFLNLLFDLLPAGEPVFD 191 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR--QVIYVER 252 + + + E +EK+FL L +E+P+ + V+ E++EE + + R I+VER Sbjct: 192 REWYTSQTVRQLAREYIQEKIFLQLREEVPHQAAVLIEEFEEPQSPGEITRITGSIFVER 251 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 SQK I++G+ G+ I+ IS A+K+I ++ V L L V+V + W +P Sbjct: 252 LSQKGILIGQKGERIREISQAARKDIERLVGGKVFLRLDVRVSEGWRENPGML 304 >gi|228941465|ref|ZP_04104016.1| GTP-binding protein era [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960565|ref|ZP_04122214.1| GTP-binding protein era [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974396|ref|ZP_04134965.1| GTP-binding protein era [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980989|ref|ZP_04141292.1| GTP-binding protein era [Bacillus thuringiensis Bt407] gi|229048019|ref|ZP_04193595.1| GTP-binding protein era [Bacillus cereus AH676] gi|229111773|ref|ZP_04241321.1| GTP-binding protein era [Bacillus cereus Rock1-15] gi|229129577|ref|ZP_04258547.1| GTP-binding protein era [Bacillus cereus BDRD-Cer4] gi|229146885|ref|ZP_04275250.1| GTP-binding protein era [Bacillus cereus BDRD-ST24] gi|229152500|ref|ZP_04280692.1| GTP-binding protein era [Bacillus cereus m1550] gi|228631108|gb|EEK87745.1| GTP-binding protein era [Bacillus cereus m1550] gi|228636713|gb|EEK93178.1| GTP-binding protein era [Bacillus cereus BDRD-ST24] gi|228653894|gb|EEL09762.1| GTP-binding protein era [Bacillus cereus BDRD-Cer4] gi|228671767|gb|EEL27063.1| GTP-binding protein era [Bacillus cereus Rock1-15] gi|228723476|gb|EEL74845.1| GTP-binding protein era [Bacillus cereus AH676] gi|228778780|gb|EEM27044.1| GTP-binding protein era [Bacillus thuringiensis Bt407] gi|228785446|gb|EEM33456.1| GTP-binding protein era [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799165|gb|EEM46133.1| GTP-binding protein era [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818246|gb|EEM64320.1| GTP-binding protein era [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 266 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 145/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E ++Q++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDAQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID + PE+LLE + KL + +SA Sbjct: 61 NAVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ D ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVDALIGTIKKYLPEGPQYYPENQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VER SQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERASQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|319896431|ref|YP_004134624.1| gtp-binding protein era homolog [Haemophilus influenzae F3031] gi|317431933|emb|CBY80281.1| GTP-binding protein era homolog [Haemophilus influenzae F3031] Length = 302 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 159/291 (54%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 6 DKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDT 65 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S I D++ VVD + +L ++ + ++L Sbjct: 66 PGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDGT-HWNADDEMVLNKLRNAKAPVVLA 124 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D +K + L ++++K F +SA +G+ ++ + +L + Sbjct: 125 INKVDNIKNKDDLLPFITDLSSKFNFAH-IVPISAQRGNNVQELEKIVRQSLREGVHHFP 183 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 184 EDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVEREG 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 QKKMVIGAGGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|328474122|gb|EGF44927.1| GTPase Era [Vibrio parahaemolyticus 10329] Length = 303 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 168/292 (57%), Gaps = 8/292 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ ++ + Q +++DT Sbjct: 5 ENQHCGFIAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDT 64 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD K + +L ++ K + ++L Sbjct: 65 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTK-DDEMVLTKLQKSNFPVVLC 123 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V + E +L AE++ K+ F++ +SA +G D + ++ + LP A + Sbjct: 124 VNKVDNVQDRNEVMLHMAEMSKKMDFVD-VVPISAKQGKNIDVLRKHVRNHLPKATHHFP 182 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVER 252 + ++D +EI REKL E+PYS V E+++ + DG I +I VER Sbjct: 183 EEYVTDRSQRFMASEIVREKLMRFTGDELPYSVTVEIERFDYNPETDG-FHINALILVER 241 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 242 NGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 293 >gi|261492469|ref|ZP_05989023.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496944|ref|ZP_05993312.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307468|gb|EEY08803.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311832|gb|EEY12981.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 305 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 159/286 (55%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ + K+SI + K QTTR + GI +E + Q +++DTPG+ Sbjct: 14 GFIAIVGRPNVGKSTLLNKILEQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHI 73 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S I D++ VV+ + + + +L ++ + ++L +NKID Sbjct: 74 EEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTEDD-EMVLNKLRSAKAPVLLAINKID 132 Query: 142 CVKP-ERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +K E LL E++ K F E +SA +G + ++ +L + + ++ Sbjct: 133 NIKEKEELLPHITELSQKFDFAE-ILPISAQRGKNVHILQKFVRQSLRQGEHHFPEEYVT 191 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL +E+PYS V E+++ + G I +I VER QKK++ Sbjct: 192 DRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKMNERGVYEINGLILVERDGQKKMV 251 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G GQ IKTI +EA+K++ + + VHL L+VKV+ W D + Sbjct: 252 IGAGGQKIKTIGIEARKDMERLFDNQVHLELWVKVKAGWADDERAL 297 >gi|182418397|ref|ZP_02949691.1| GTP-binding protein Era [Clostridium butyricum 5521] gi|237666582|ref|ZP_04526567.1| GTP-binding protein Era [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377779|gb|EDT75323.1| GTP-binding protein Era [Clostridium butyricum 5521] gi|237657781|gb|EEP55336.1| GTP-binding protein Era [Clostridium butyricum E4 str. BoNT E BL5262] Length = 296 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 154/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N +G K+SIV++K QTTR+ ++ I++ + Q+VF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDFQMVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + + K D+V + + E+ +L+ + + + +LNK+ Sbjct: 63 HKPKHKLGEFMVNSAKESTKDVDLVLFLTNPCEEIGKGDRFILETLKGKKCPVFFVLNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +R+ + E+ +K + +SA KG D +L+ + ++P P Y D I+D Sbjct: 123 DENTQDRVAKTLEMFSKEFEFAEIVPISAIKGKNVDALLDLMKKSMPEGPKYYPDDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + +EI REK L E+P+ V + ++ + G+ I + E+ S K I++ Sbjct: 183 VQEKFVISEIVREKALRTLRDEVPHGIAVDILQMKQNERGTYHIEVDLICEKDSHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNGQ +K I ++ EI + L V++ ++VKV+K+W Sbjct: 243 GKNGQTLKRIGETSRYEIEKFLRAKVNIKIWVKVRKEW 280 >gi|302800566|ref|XP_002982040.1| hypothetical protein SELMODRAFT_115965 [Selaginella moellendorffii] gi|300150056|gb|EFJ16708.1| hypothetical protein SELMODRAFT_115965 [Selaginella moellendorffii] Length = 387 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 158/289 (54%), Gaps = 12/289 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S V ++GA NAGKS+L+N VG KVS V+ K TTR+ + G+++E ++Q++F DT Sbjct: 80 DEQMSVRVGIIGAPNAGKSSLLNFLVGTKVSAVSRKTNTTRNEILGVLTENDTQVLFYDT 139 Query: 78 PGIF-----NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKR 129 PG+ A K ++ +W H +++ ++VD+HR+++ + L++++ ++ Sbjct: 140 PGLMMRWKGQAVRRDVKSRVQSAWMVTGHCEVLIVLVDAHRQIERPDQRVRKLIEKLGEK 199 Query: 130 SS---RLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + IL LNK+D ++ +R L+ A+ L ++ FM+S +G G + YL Sbjct: 200 KDPKQKRILCLNKVDLIRQKRELVPLAQEFGSLPGYDRVFMISGLRGSGVRHLKEYLLEK 259 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW ++D+ E+ E + ++H+EIPY W+ KD SI I Sbjct: 260 AVPRPWEEEKGVVTDMSPIAVAKEVVWEHVLDNVHQEIPYHLHHKHVSWKILKDRSIRIE 319 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 Q I V SQKKI++GKNG I+ I + A +E++ VHLIL VK+ Sbjct: 320 QQIIVPTDSQKKILVGKNGGLIRKIGMAANEELSARFGAKVHLILDVKI 368 >gi|56478591|ref|YP_160180.1| GTP-binding protein Era [Aromatoleum aromaticum EbN1] gi|56314634|emb|CAI09279.1| GTP-binding protein Era homolog [Aromatoleum aromaticum EbN1] Length = 305 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 162/292 (55%), Gaps = 15/292 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL+NR +G K+SIV+ K QTTR V GI++ +Q VF+DTPG Sbjct: 16 RTGFVAIVGRPNVGKSTLLNRLIGQKISIVSRKAQTTRHRVTGILTSDNAQFVFVDTPGF 75 Query: 81 FNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSRLILI 136 +++ ++ M R + D+V LV+++ R D +++ ++++L+ Sbjct: 76 QTRHRNALNRSMNRTVSQVLGDVDLVFLVIEAGR-----FGDDDRKVVSVLPGDAKVVLV 130 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D + K + L A++A F E +SA +G + ++ LP +Y Sbjct: 131 INKVDRLGDKSQLLPFIAKMAEVYPFTE-IVPLSAERGTNVEALVKTATPLLPEGEPMYG 189 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERP 253 AD+I+D AE REKLF L E+PY V EK+E +G++ I + V+R Sbjct: 190 ADEITDRSERFLAAEFLREKLFRLLGDELPYGVAVEIEKFE--TEGNLRRIYAAVVVDRS 247 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 S K I++GK G+ +K I+ EA+ E+ ++ + V L ++VKV+ W D + Sbjct: 248 SHKGIVIGKGGEQLKRIASEARVELEKLFDGKVFLEVWVKVKSGWADDERAL 299 >gi|255292983|dbj|BAH90080.1| GTP-binding protein [uncultured bacterium] gi|255293015|dbj|BAH90111.1| GTP-binding protein Era [uncultured bacterium] Length = 322 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 154/302 (50%), Gaps = 12/302 (3%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D + RSG VG NAGKSTL N VG+K++I + K QTTR +RGIV ++Q+V Sbjct: 14 DGRPEGFRSGFACFVGRPNAGKSTLTNALVGSKIAITSSKPQTTRHAIRGIVHRADAQMV 73 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR- 132 +DTPG+ + + + L T D++ + + S + + L+ +IA+ R Sbjct: 74 LIDTPGLHKPRTLLGERLNDLVHETWSEVDVIGVCLPSDQRIGPGDTYLVSQIAELPHRP 133 Query: 133 -LILILNKIDCVKPERLLEQ----AEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTL 186 L+ + K D V ER+ + + KL + E VSA G D+V + L S L Sbjct: 134 KLVALATKSDLVSGERMRDHLVSIQALEEKLGIRWEHIVPVSAVSGEQVDEVADVLVSLL 193 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSI 242 P P Y +I+D P AE+ RE + E+P+S V E + +D + Sbjct: 194 PEGPAYYPDGEITDEPTETLVAELIRECALEGVRDELPHSIIVTIEEMGLREGRPEDKPL 253 Query: 243 L-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 L I + VER SQK IM+G G +++ + A+++I +L PVHL L VKV K+W D Sbjct: 254 LDIFANLIVERDSQKGIMIGHKGSHLREVGTAAREQITRLLGTPVHLDLRVKVLKEWQRD 313 Query: 302 PK 303 PK Sbjct: 314 PK 315 >gi|269127450|ref|YP_003300820.1| GTP-binding protein Era [Thermomonospora curvata DSM 43183] gi|268312408|gb|ACY98782.1| GTP-binding protein Era [Thermomonospora curvata DSM 43183] Length = 311 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 150/287 (52%), Gaps = 4/287 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +G N GKSTL+N VG KV+I + + QTTR +RGIV ++Q++ +DTPG+ Sbjct: 16 RCGFACFIGRPNVGKSTLMNALVGTKVAITSSRPQTTRRAIRGIVHRCDAQLIIVDTPGL 75 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 + + + L ST+ D++ + ++ ++ + +E+A S + ++ I+ Sbjct: 76 HKPRTLLGERLDSLVRSTLTEVDVIGFCIPANEKIGPGDRFIARELAGLSGKTPVVAIVT 135 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K D R+ EQ ++L VSAT+G D V + L S LP +Y + Sbjct: 136 KTDLADRRRIAEQLVQVDRLGDFADIVPVSATEGFQVDLVGDLLISHLPEGMPLYPEGDL 195 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P AE+ RE + E+P+S VV + + E +D I + ++VERPSQK Sbjct: 196 TDEPEHVLVAELIREAALEGVRDELPHSIAVVVDEIRPREDRDDLIEVYAHLFVERPSQK 255 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++G G ++ + A+K+I +L V+L L V V KDW DPK Sbjct: 256 AIVIGAKGSRLREVGTCARKQIEALLGVRVYLDLQVSVAKDWQRDPK 302 >gi|34557655|ref|NP_907470.1| GTP-binding protein Era [Wolinella succinogenes DSM 1740] gi|34483372|emb|CAE10370.1| GTP-BINDING PROTEIN [Wolinella succinogenes] Length = 299 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 161/290 (55%), Gaps = 15/290 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++G VA+VG NAGKSTL+N VG K+++V+HK TR ++ I+ +E+QI+F+DTPG Sbjct: 8 TKAGFVAVVGRPNAGKSTLLNWLVGEKLAMVSHKANATRKRMKFIIPHQEAQIIFVDTPG 67 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLI 134 + + + ++ M++ + I D++ + SH E + + + + + Sbjct: 68 LHHQEKLLNQFMLQEALKAIGDCDLILFLAPVSDSISHYEEFLRVSE--------GKKHL 119 Query: 135 LILNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L+L+KID V +LL++ A+ A E VS KG G + +L+ +P +P ++ Sbjct: 120 LLLSKIDTVDNGKLLQKIAQYAPYAESYEALIPVSVKKGVGKEAILSETAKQMPPSPPLF 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D ++ E+ RE +F ++ EIPY S VV +K+EE + G + I VE+ Sbjct: 180 EEDILTTENFRQLYKELIRESIFENVSDEIPYESDVVIDKFEE-EGGLDKVSATIVVEKD 238 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK +++GK G ++ I EA+ + E+ + V L LFVKVQK W D K Sbjct: 239 SQKGVLIGKGGATLQRIGKEARLLMEEMSGKKVFLKLFVKVQKGWSKDKK 288 >gi|257452783|ref|ZP_05618082.1| GTP-binding protein Era [Fusobacterium sp. 3_1_5R] gi|257466849|ref|ZP_05631160.1| GTP-binding protein Era [Fusobacterium gonidiaformans ATCC 25563] gi|315917997|ref|ZP_07914237.1| GTP-binding protein era [Fusobacterium gonidiaformans ATCC 25563] gi|317059324|ref|ZP_07923809.1| GTP-binding protein era [Fusobacterium sp. 3_1_5R] gi|313685000|gb|EFS21835.1| GTP-binding protein era [Fusobacterium sp. 3_1_5R] gi|313691872|gb|EFS28707.1| GTP-binding protein era [Fusobacterium gonidiaformans ATCC 25563] Length = 296 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 152/279 (54%), Gaps = 1/279 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GI++ + Q +F+DTPGI Sbjct: 2 KAGFIAVVGRPNVGKSTLMNKLVSEKVAIVSDKAGTTRDNIKGILNFQGKQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M ++ ++K AD + ++D +E+ + ++I +++++NKI Sbjct: 62 HKPKHLLGEYMTEIAIRSLKDADAILFLLDGTQEISTGDFFVWEKIQSSKKPVVVLVNKI 121 Query: 141 DCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + E + E+ KL K S G +L+ L L Y D + Sbjct: 122 DKISDEEIEEKKLEIQEKLGEGFKIVFASGMYSFGLPRLLDALEEYLEEGIQYYPEDMYT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+ ++ EI REK+ EIP+S + E+K+ IYVER SQK I+ Sbjct: 182 DMSIYRMITEIVREKILEKTRDEIPHSVAIEILNVAERKEAKDKFDINIYVERSSQKGIL 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +GK+G+ +K I EA+KEI +LE+ ++L L+VKV+ DW Sbjct: 242 IGKDGKMLKEIGSEARKEIENLLERKIYLTLWVKVKDDW 280 >gi|302551316|ref|ZP_07303658.1| GTP-binding protein Era [Streptomyces viridochromogenes DSM 40736] gi|302468934|gb|EFL32027.1| GTP-binding protein Era [Streptomyces viridochromogenes DSM 40736] Length = 320 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I ++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 20 RAGFACFVGRPNAGKSTLTNALVGQKVAITANQPQTTRHTVRGIVHRPDAQLILVDTPGL 79 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + ++ +L + KE+A + + I I Sbjct: 80 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELASIKKTPKIAI 136 Query: 137 LNKIDCVKPERLLEQA----EIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V + L EQ ++ +L F + VSA D + + + LP P Sbjct: 137 VTKTDLVDGKMLAEQLIAIDQLGKELGFEWAEIIPVSAVGDKQVDLLADLIVPLLPEGPA 196 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 197 LYPEGDLTDEPEQVMIAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIHA 256 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + ++++K+I +L PV L L VKV KDW DP+ Sbjct: 257 FVYIERPSQKGIIIGPKGKRLKEVGIKSRKQIEALLGTPVFLDLHVKVAKDWQRDPR 313 >gi|228923052|ref|ZP_04086345.1| GTP-binding protein era [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954584|ref|ZP_04116609.1| GTP-binding protein era [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071803|ref|ZP_04205018.1| GTP-binding protein era [Bacillus cereus F65185] gi|229081560|ref|ZP_04214058.1| GTP-binding protein era [Bacillus cereus Rock4-2] gi|229180577|ref|ZP_04307919.1| GTP-binding protein era [Bacillus cereus 172560W] gi|228603001|gb|EEK60480.1| GTP-binding protein era [Bacillus cereus 172560W] gi|228701765|gb|EEL54253.1| GTP-binding protein era [Bacillus cereus Rock4-2] gi|228711398|gb|EEL63358.1| GTP-binding protein era [Bacillus cereus F65185] gi|228805241|gb|EEM51835.1| GTP-binding protein era [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836685|gb|EEM82033.1| GTP-binding protein era [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 266 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 145/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E ++Q++F+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDAQVIFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID + PE+LLE + KL + +SA Sbjct: 61 NAVEGFGRGEEFIIEKLKETKQPVFLVINKIDQLHPEQLLELIDQYRKLHEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ D ++ + LP P Y +Q++D P AE+ REK+ +E+P+S V Sbjct: 121 LDGNNVDALIGTIKKYLPEGPQYYPDNQVTDHPERFIIAELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VER SQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERASQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|167854943|ref|ZP_02477718.1| GTP-binding protein Era [Haemophilus parasuis 29755] gi|219870403|ref|YP_002474778.1| GTP-binding protein Era [Haemophilus parasuis SH0165] gi|254783657|sp|B8F3C8|ERA_HAEPS RecName: Full=GTPase Era gi|167853900|gb|EDS25139.1| GTP-binding protein Era [Haemophilus parasuis 29755] gi|219690607|gb|ACL31830.1| GTP-binding protein Era binding 16S rRNA and 30S ribosome [Haemophilus parasuis SH0165] Length = 300 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 156/286 (54%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRILGIKTEGAYQEIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S I D+V VV+ + + +L ++ + +IL +NK+D Sbjct: 69 EEKRAINRLMNRAAASAIGDVDMVIFVVEGTKWTDDD-EMVLNKLRSTKAPVILAINKVD 127 Query: 142 CVKP-ERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +K E LL ++ K F E +SA +G + ++ +L Y D ++ Sbjct: 128 NIKEKEELLPHLTALSQKFPFKE-IIPISAQRGKNVHILEKFVRESLKEGIHHYPEDYVT 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL + +E+PYS V E+++ + G+ I +I VER QKK++ Sbjct: 187 DRSQRFMASEIIREKLMRFMGEELPYSVTVEIEQFKTNERGTYEINGLILVEREGQKKMV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G GQ IK I EA+ ++ + + VHL L+VKV+ W D + Sbjct: 247 IGNKGQKIKVIGTEARADMERLFDNKVHLELWVKVKAGWADDERAL 292 >gi|329894312|ref|ZP_08270182.1| GTP-binding protein Era [gamma proteobacterium IMCC3088] gi|328923108|gb|EGG30431.1| GTP-binding protein Era [gamma proteobacterium IMCC3088] Length = 300 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 156/287 (54%), Gaps = 4/287 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +S VA+VG N GKSTL+N +G K+SI + K QTTR + GI +E + Q+VF+DTPGI Sbjct: 7 KSAIVAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHTLLGIHTEGDFQLVFVDTPGI 66 Query: 81 FNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K + ++ M + + DI+C++VD + + K + + S++L+L++NK Sbjct: 67 HSEHKKALNEYMNHAATQAMADTDIICMIVD-RTHWNADDERVFKHVKRHSAKLVLVVNK 125 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D + + RLL E + ++ VSA ++ L P+ ++ DQ+ Sbjct: 126 VDLLNDKGRLLPYLEELYQKSGADEIVPVSAFTPSDVQRLVQALVKLSPVGEAIFPEDQV 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 + +EI REK+ L E+PYS+ V E ++ + + I IYVER QKKI Sbjct: 186 TTRSSRFLASEIVREKITRQLGDELPYSATVAIESFDVGERFT-EIHATIYVERQGQKKI 244 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++G G +K+I EA+ ++ + + V L L+VKV+ +W D + Sbjct: 245 LIGDGGSRLKSIGTEARLDMERLFDHKVVLKLWVKVKANWSDDARAM 291 >gi|229013520|ref|ZP_04170654.1| GTP-binding protein era [Bacillus mycoides DSM 2048] gi|229061993|ref|ZP_04199319.1| GTP-binding protein era [Bacillus cereus AH603] gi|229135125|ref|ZP_04263927.1| GTP-binding protein era [Bacillus cereus BDRD-ST196] gi|229169048|ref|ZP_04296764.1| GTP-binding protein era [Bacillus cereus AH621] gi|228614457|gb|EEK71566.1| GTP-binding protein era [Bacillus cereus AH621] gi|228648354|gb|EEL04387.1| GTP-binding protein era [Bacillus cereus BDRD-ST196] gi|228717302|gb|EEL68975.1| GTP-binding protein era [Bacillus cereus AH603] gi|228747757|gb|EEL97626.1| GTP-binding protein era [Bacillus mycoides DSM 2048] Length = 266 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 145/249 (58%) Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 ++ K QTTR+ ++G+ +E +SQ+VF+DTPGI K M++++ +T+K DIV +V Sbjct: 1 MSDKPQTTRNKIQGVYTENDSQVVFIDTPGIHKPKHKLGDFMVKMAQTTLKEVDIVLFMV 60 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA 169 ++ +++++ + + L++NKID + PE+LLE + KL + +SA Sbjct: 61 NATEGYGRGEEFIIEKLQETKQPVFLVINKIDQLHPEQLLELIDQYRKLYEFAEIVPISA 120 Query: 170 TKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 G+ + ++ + LP P Y +Q++D P +E+ REK+ +E+P+S V Sbjct: 121 LDGNNVEALIGAIKKYLPEGPQYYPDNQVTDHPERFIISELIREKVLHLTREEVPHSVAV 180 Query: 230 VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 V + ++++ G++ I I VER SQK I++GK G+ +K + A+ +I +L V L Sbjct: 181 VIDAIQKREGGAVYINATIVVERASQKGIIIGKQGKMLKEVGKRARFDIEALLGSKVFLE 240 Query: 290 LFVKVQKDW 298 ++VKVQKDW Sbjct: 241 VWVKVQKDW 249 >gi|325681534|ref|ZP_08161059.1| ribosome biogenesis GTPase Era [Ruminococcus albus 8] gi|324106801|gb|EGC01092.1| ribosome biogenesis GTPase Era [Ruminococcus albus 8] Length = 298 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 156/284 (54%), Gaps = 5/284 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+ V + G NAGKS+L+N VG K++ V+ K QTTR+ + G++++ E+Q VF+DTPG Sbjct: 2 TRNIFVTIAGRANAGKSSLLNALVGEKIAAVSDKPQTTRTKITGVLTKGETQFVFMDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + AK+ + M+ TI D++ L+ D +++ N L++ S++IL LNK Sbjct: 62 MHKAKNKLSEHMVNTVNETIAGVDMIILMCDCTKKISDNEKSLIQSFKGGRSKVILALNK 121 Query: 140 IDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID + E ++ + + L E+ +S + G D +++ L P + D+ Sbjct: 122 IDLLDNKEDVIAKLAEYSALYDFEEVVPISVAENDGLDIIMDILEKNAAEGPHFFPDDKF 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS----ILIRQVIYVERPS 254 +D P AE+ REK +L+ E+P+ V E+ E++D + + I IY ER S Sbjct: 182 TDQPEKVIMAEMIREKALKNLNDEVPHGVAVTIEQLGEREDRNGEAILDITATIYCERES 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G ++ I +A+ ++ E + V+L +VKV++ W Sbjct: 242 HKGIIIGKGGNMLRKIGQDARADLEEFFQIKVNLQCWVKVKEGW 285 >gi|16271988|ref|NP_438186.1| GTP-binding protein Era [Haemophilus influenzae Rd KW20] gi|68248564|ref|YP_247676.1| GTP-binding protein Era [Haemophilus influenzae 86-028NP] gi|145633430|ref|ZP_01789160.1| GTP-binding protein Era [Haemophilus influenzae 3655] gi|145636783|ref|ZP_01792449.1| GTP-binding protein Era [Haemophilus influenzae PittHH] gi|229846932|ref|ZP_04467038.1| GTP-binding protein Era [Haemophilus influenzae 7P49H1] gi|260580683|ref|ZP_05848510.1| GTP-binding protein Era [Haemophilus influenzae RdAW] gi|1169543|sp|P43728|ERA_HAEIN RecName: Full=GTPase Era gi|317374938|sp|A5UFI7|ERA_HAEIG RecName: Full=GTPase Era gi|1572957|gb|AAC21691.1| GTP-binding protein (era) [Haemophilus influenzae Rd KW20] gi|68056763|gb|AAX87016.1| GTP-binding protein era homolog [Haemophilus influenzae 86-028NP] gi|144985993|gb|EDJ92595.1| GTP-binding protein Era [Haemophilus influenzae 3655] gi|145270081|gb|EDK10018.1| GTP-binding protein Era [Haemophilus influenzae PittHH] gi|229810016|gb|EEP45736.1| GTP-binding protein Era [Haemophilus influenzae 7P49H1] gi|260092745|gb|EEW76681.1| GTP-binding protein Era [Haemophilus influenzae RdAW] Length = 302 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 159/291 (54%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 6 DKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDT 65 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S I D++ VVD + +L ++ + ++L Sbjct: 66 PGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLA 124 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D +K + L ++++K F +SA +G+ ++ + +L + Sbjct: 125 INKVDNIKNKDDLLPFITDLSSKFNFAH-IVPISAQRGNNVHELEKIVRQSLREGVHHFP 183 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 184 EDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVEREG 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 QKKMVIGAGGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|317051559|ref|YP_004112675.1| GTP-binding protein Era [Desulfurispirillum indicum S5] gi|316946643|gb|ADU66119.1| GTP-binding protein Era [Desulfurispirillum indicum S5] Length = 300 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 5/282 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V +VG N GKSTL+ +G K+SI++ K QTTR+ + G+ + Q+VFLDTPG+ Sbjct: 4 RSGFVGIVGRPNVGKSTLMGAIIGEKISIISDKPQTTRNRIMGVWHGDDFQVVFLDTPGV 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL---ILIL 137 K + M+ ++S + DI+ LVV+ + LL E+ R L L++ Sbjct: 64 HKGKYGINDFMLNTAFSVLSEVDILLLVVEYWETGGQEFNLLLGELRSRHRELPPVFLVV 123 Query: 138 NKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID + + +LE L VSA G D + + + P + D Sbjct: 124 NKIDLAEDKHEILESIARQKDLFDFAGIIPVSALNGENLDRLKALIVEQMEEGPRYFPED 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 I+D AE REK+F+ EIP+S V E++ +++ ++I IYVER SQK Sbjct: 184 MITDQSERFLVAEFIREKVFVLTRDEIPHSIAVQVEQFVTEEN-RLVISACIYVERDSQK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +++GK G IK I +A+ ++ +L V L L VKV +DW Sbjct: 243 GMIIGKRGAMIKEIGSQARVDLERMLGTKVFLELHVKVSRDW 284 >gi|91227851|ref|ZP_01262024.1| GTP-binding protein Era [Vibrio alginolyticus 12G01] gi|269965786|ref|ZP_06179883.1| GTP-binding protein [Vibrio alginolyticus 40B] gi|91188361|gb|EAS74657.1| GTP-binding protein Era [Vibrio alginolyticus 12G01] gi|269829654|gb|EEZ83891.1| GTP-binding protein [Vibrio alginolyticus 40B] Length = 320 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 168/292 (57%), Gaps = 8/292 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ ++ + Q +++DT Sbjct: 22 ENQHCGFIAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDT 81 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD K + +L ++ K + ++L Sbjct: 82 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTK-DDEMVLTKLQKSNFPVVLC 140 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V+ +L AE++ K+ F++ +SA +G D + ++ + LP A + Sbjct: 141 VNKVDNVQDRNDVMLHMAEMSKKMDFVD-VVPISAKQGKNIDVLRKHVRNHLPKATHHFP 199 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVER 252 + ++D +EI REKL +E+PYS V E+++ + DG I +I VER Sbjct: 200 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPETDG-FHINALILVER 258 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 259 NGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 310 >gi|302038214|ref|YP_003798536.1| GTP-binding protein Era-like protein [Candidatus Nitrospira defluvii] gi|300606278|emb|CBK42611.1| GTP-binding protein Era homolog [Candidatus Nitrospira defluvii] Length = 294 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 162/290 (55%), Gaps = 7/290 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA++G +N GKSTL+NR + K++IV+ K QTTR+ + G+ + +QIVFLDTPG Sbjct: 4 GSVAIIGRSNVGKSTLLNRLLKEKIAIVSDKPQTTRTRILGVAHVEGAQIVFLDTPGFHE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-----LKVNIHDLLKEIAKRSSRLILIL 137 ++ M+R + T AD++ +VV++ + L V I + + +AK++ ++L++ Sbjct: 64 PHHLLNRRMVRTTLDTFDDADVLYVVVEATAQPGPGDLAV-IEHVKQAVAKQARPVVLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D V RLL E ++ + VSA D +L+ S L + D Sbjct: 123 NKVDLVNKSRLLPLMEQYLRIFPWTEIVPVSAETADNVDRLLSVTVSLLAEGEATFGDDV 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D M AE+ REK+ ++E+P+S V E++ E K + I V+ VE+ SQK Sbjct: 183 VTDQSMRTLAAELIREKILQQTYEEVPHSVAVEIEEFIETKKLT-KIGAVVLVEKESQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 I++GK+G+ +K + A++++ + V L ++VKV++ W D + + Sbjct: 242 ILIGKHGERLKLVGTAAREDMERLFGMKVFLKVWVKVRESWREDEQTLAE 291 >gi|270265299|ref|ZP_06193560.1| GTP-binding protein [Serratia odorifera 4Rx13] gi|270040703|gb|EFA13806.1| GTP-binding protein [Serratia odorifera 4Rx13] Length = 302 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 159/290 (54%), Gaps = 15/290 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI ++ Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 K + ++LM R + S+I ++V VV+ + E+ VN LK ++L Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLK------CPVLLA 122 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V K + L A ++ ++ F++ +SA KG D + LP A + Sbjct: 123 INKVDNVTDKSKLLPHIAFLSQQMNFLD-VVPISAEKGMNVDTIAAIARKLLPEAEHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L +E+PYS V E++ + G + +I VER Sbjct: 182 DDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNVHGLILVEREG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G IKTI +EA+ ++ ++ E VHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGSKIKTIGIEARHDMEQMFETKVHLELWVKVKSGWADDERA 291 >gi|285019300|ref|YP_003377011.1| GTP-binding protein era [Xanthomonas albilineans GPE PC73] gi|283474518|emb|CBA17019.1| probable gtp-binding protein era [Xanthomonas albilineans] Length = 299 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 160/292 (54%), Gaps = 22/292 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL N VGAKVSIV+++ QTTR + GI S Q++ +DTPG+ Sbjct: 9 RSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIASFPAGQLLLVDTPGL 68 Query: 81 FNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRSSRLI 134 K + +++M R + ++ D LV+++ R L N+ + ++ Sbjct: 69 HREHKRAMNRVMNRAARGALEGVDAGLLVIEAGRWDEEDTLAFNV------LGDAGIPVV 122 Query: 135 LILNKIDCVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L++NK+D +K + L+Q + VSA K G + ++ L + +P AP Sbjct: 123 LVVNKVDRLKDKTALLPFLQQVSDGRSFAAVHP---VSALKRKGMEALVRDLLALVPEAP 179 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIY 249 ++ D+I+D E+ RE+L L +E+PY++ V E++ E DG++L I VI+ Sbjct: 180 PMFGEDEITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFAE--DGALLRIGAVIW 237 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER QK I++GK G +K I +A++++ + V L +V+V++ W D Sbjct: 238 VEREGQKAIVIGKGGTRLKEIGAKARQQMERLFGAKVFLETWVRVREGWSDD 289 >gi|319774961|ref|YP_004137449.1| GTP-binding protein Era-like protein [Haemophilus influenzae F3047] gi|329123137|ref|ZP_08251707.1| GTP-binding protein Era [Haemophilus aegyptius ATCC 11116] gi|317449552|emb|CBY85757.1| GTP-binding protein era homolog [Haemophilus influenzae F3047] gi|327471692|gb|EGF17134.1| GTP-binding protein Era [Haemophilus aegyptius ATCC 11116] Length = 302 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 159/291 (54%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 6 DKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDT 65 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S I D++ VVD + +L ++ + ++L Sbjct: 66 PGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLA 124 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D +K + L ++++K F +SA +G+ ++ + +L + Sbjct: 125 INKVDNIKNKDDLLPFITDLSSKFNFAH-IVPISAQRGNNVHELETIVRQSLREGVHHFP 183 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 184 EDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVEREG 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 QKKMVIGAGGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|260775207|ref|ZP_05884105.1| GTP-binding protein Era [Vibrio coralliilyticus ATCC BAA-450] gi|260608908|gb|EEX35070.1| GTP-binding protein Era [Vibrio coralliilyticus ATCC BAA-450] Length = 324 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 166/292 (56%), Gaps = 8/292 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G VA+VG N GKSTL+NR +G K+SI + K QTTR + G+ +E + Q +++DT Sbjct: 26 ENQHCGFVAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDT 85 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD K + +L ++ K + ++L Sbjct: 86 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTK-DDEMVLTKLQKSNFPVVLC 144 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V+ +L +++ K+ F++ +SA +G D + ++ LP A + Sbjct: 145 VNKVDNVQDRNDVMLHMMDMSKKMEFVD-VVPISAKQGKNIDVLRKHVREHLPKAAHHFP 203 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVER 252 + ++D +EI REKL +E+PYS V E+++ + DG I +I VER Sbjct: 204 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPETDG-FHINALILVER 262 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 263 NGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 314 >gi|328882360|emb|CCA55599.1| GTP-binding protein Era [Streptomyces venezuelae ATCC 10712] Length = 316 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/315 (32%), Positives = 163/315 (51%), Gaps = 20/315 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 M ++ N+ + V R+G VG NAGKSTL N VG KV+I +++ QTTR VR Sbjct: 1 MAPMSARNQETEAVH---RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVR 57 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNI 119 GIV E+Q++ +DTPG+ + + + +R +W+ + D++ + + ++L Sbjct: 58 GIVHRPEAQLILVDTPGLHKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGD 114 Query: 120 HDLLKEIAK-RSSRLILILNKIDCVKPERLLEQAEIANKL---VFIE--KTFMVSATKGH 173 + KE+A + + + I+ K D V + L EQ ++L + IE + VSA Sbjct: 115 KFIAKELAGIKKTPKVAIITKTDLVDSKTLAEQLIAVDQLGKELGIEWAQIVPVSAVGDK 174 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE- 232 V + L LP +P +Y ++D P AE+ RE + E+P+S VV E Sbjct: 175 QVQLVADLLVPMLPESPPLYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEE 234 Query: 233 ---KWEEKKDGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHL 288 + D +L I +Y+ERPSQK I++G G +K + ++++K I +L PV L Sbjct: 235 MIPRENRPADRPLLDIHANVYIERPSQKGIIIGPKGSRLKEVGMKSRKHIEALLGTPVFL 294 Query: 289 ILFVKVQKDWGHDPK 303 L VKV KDW DPK Sbjct: 295 DLHVKVAKDWQRDPK 309 >gi|319763844|ref|YP_004127781.1| gtp-binding protein era [Alicycliphilus denitrificans BC] gi|330823892|ref|YP_004387195.1| GTP-binding protein Era [Alicycliphilus denitrificans K601] gi|317118405|gb|ADV00894.1| GTP-binding protein Era [Alicycliphilus denitrificans BC] gi|329309264|gb|AEB83679.1| GTP-binding protein Era [Alicycliphilus denitrificans K601] Length = 313 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 157/293 (53%), Gaps = 20/293 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 19 RCGLIAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTRGQTQFVFVDTPG- 77 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S +K + + I D++ VV++ + L + K +LI N Sbjct: 78 FQTRHSTALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVL--SLFKPGIPTLLIAN 135 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT-----FMVSATKGHGCDDVLNYLCST-LPLAPWV 192 K+D V +AEIA L +++ F+ + K G + L +C LP PW Sbjct: 136 KLDTVH-----RRAEIAPWLKGMQERHPFAEFVPMSAKNKGDIERLFGICEKYLPEQPWW 190 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS----ILIRQVI 248 Y+ D+++D +E REKLF E+PY+S VV +KW+E+K I I I Sbjct: 191 YAEDELTDRSEKFLASETVREKLFRFTGDELPYTSTVVIDKWDEEKSKQYKRFIRIAATI 250 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER K +++G+ G+ +K IS EA++E+ ++L+ V L ++VKV+ W D Sbjct: 251 VVERDGHKAMVIGEKGERLKRISTEARQELEKLLDAKVFLEVWVKVRSGWADD 303 >gi|300853996|ref|YP_003778980.1| putative ras-like GTP-binding protein [Clostridium ljungdahlii DSM 13528] gi|300434111|gb|ADK13878.1| predicted ras-like GTP-binding protein [Clostridium ljungdahlii DSM 13528] Length = 293 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 154/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + ++G N GKSTL+N +G K+SIV+ + QTTR+ ++ I++E + Q+VF+DTPGI Sbjct: 3 KSGFITIIGRPNVGKSTLLNNIMGEKLSIVSCRPQTTRNSIQTILTEDDFQLVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++ + +IK D+V + E +L+E+ K + + L+LNKI Sbjct: 63 HKPKHKLGDYMVKAAEDSIKDVDLVLFLTTPELEPGKGDLYILEELKKCNVPVFLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +R+ E + + + + +SA K +++++ + +P P Y D I+D Sbjct: 123 DENPEQRVAETLKNYSAIFNFVEVIPISALKKKNVEELIDLMVKYMPEGPKYYPDDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +EI REK L KE+P+ V + ++ G I + E+ S K I++ Sbjct: 183 KQEKFIVSEIIREKALRLLSKEVPHGIAVEIDSMKKDSKGIYNIEATLLCEKDSHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNG +K IS A+K+I + L+ V+L ++VKV+K+W Sbjct: 243 GKNGAMLKKISTYARKDIEKFLDTRVYLKVWVKVKKEW 280 >gi|331698251|ref|YP_004334490.1| GTP-binding protein Era-like-protein [Pseudonocardia dioxanivorans CB1190] gi|326952940|gb|AEA26637.1| GTP-binding protein Era-like-protein [Pseudonocardia dioxanivorans CB1190] Length = 309 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 97/298 (32%), Positives = 158/298 (53%), Gaps = 16/298 (5%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+ RSG VG NAGKSTL N +G K++I + K QTTR +RGIV ++Q+V +DT Sbjct: 9 DDHRSGFACFVGRPNAGKSTLTNALLGQKIAITSSKPQTTRHAIRGIVHRPDAQLVVVDT 68 Query: 78 PGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSS 131 PG+ + S ++R +W+ + D++ V + + I +K +A R+ Sbjct: 69 PGLHKPRTLLGSRLNDLVRETWAEV---DVIGFCVPADVPVGRGDEFIAAEMKAVAGRTP 125 Query: 132 RLILILNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++ I+ K D KPE++ E+ E+ + + VSA G + + L + LP P Sbjct: 126 -VLGIVTKTDLAKPEQVAERLTELTALDIGFAEVVPVSAVDGFQVGLLADLLVARLPEGP 184 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVT----EKWEEKKDGSIL-IR 245 +Y +++D P AE+ RE + E+P+S VV E+ + KD +L + Sbjct: 185 PLYPDGELTDEPEEILVAELVREAALEGVRDELPHSIAVVVQEMIEREDRPKDSPMLDVH 244 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 IYVER SQK I++G+ G+ ++ + A+++I +L V+L L V V KDW DP+ Sbjct: 245 ATIYVERQSQKGIVIGRGGERLRHVGSAARRQIEALLGVKVYLDLHVTVAKDWQRDPR 302 >gi|320010904|gb|ADW05754.1| GTP-binding protein Era [Streptomyces flavogriseus ATCC 33331] Length = 339 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/315 (32%), Positives = 164/315 (52%), Gaps = 35/315 (11%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 21 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRDDAQLILVDTPGL 80 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L ++KE+A + + I I Sbjct: 81 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDKFIVKELAGIKKTPKIAI 137 Query: 137 LNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATK-----GHGCDD--------- 177 + K D V+ + L EQ + +A++L F + VSA K G G D Sbjct: 138 ITKTDLVESKALAEQLLAVSALADELGFEWAEIIPVSAVKAEQEAGRGSSDRSGDGRGAG 197 Query: 178 ----VLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK 233 + + + LP +P +Y ++D P AE+ RE + E+P+S VV E+ Sbjct: 198 QVDLLADLIAPLLPESPPLYPEGDLTDEPEMVMVAELIREAALEGVRDELPHSIAVVVEE 257 Query: 234 WEEKKDGS-----ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHL 288 ++D + I +Y+ERPSQK I++G G+ +K + +++K I +L PV L Sbjct: 258 MLPREDRPADKPLLDIHANVYIERPSQKGIIIGPKGKRLKDVGTKSRKHIEALLGTPVFL 317 Query: 289 ILFVKVQKDWGHDPK 303 L VKV KDW DPK Sbjct: 318 DLHVKVAKDWQRDPK 332 >gi|254507481|ref|ZP_05119615.1| GTP-binding protein Era [Vibrio parahaemolyticus 16] gi|219549551|gb|EED26542.1| GTP-binding protein Era [Vibrio parahaemolyticus 16] Length = 325 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 164/292 (56%), Gaps = 8/292 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G VA+VG N GKSTL+NR +G K+SI + K QTTR + G+ +E + Q +++DT Sbjct: 27 ENQHCGFVAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDT 86 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + +L ++ K + ++L Sbjct: 87 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDG-THWTADDEMVLTKLQKSNFPVVLC 145 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V+ +L E++ K+ F++ +SA G D + ++ LP A + Sbjct: 146 VNKVDNVQDRNDVMLHMMEMSKKMEFVD-VVPISAKHGKNIDVLRKHVREHLPKATHHFP 204 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVER 252 + ++D +EI REKL +E+PYS V E+++ + DG I +I VER Sbjct: 205 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPETDG-FHINALILVER 263 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 264 SGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 315 >gi|238920904|ref|YP_002934419.1| GTP-binding protein Era [Edwardsiella ictaluri 93-146] gi|269140066|ref|YP_003296767.1| GTP-binding protein [Edwardsiella tarda EIB202] gi|238870473|gb|ACR70184.1| GTP-binding protein Era, putative [Edwardsiella ictaluri 93-146] gi|267985727|gb|ACY85556.1| GTP-binding protein [Edwardsiella tarda EIB202] gi|304559894|gb|ADM42558.1| GTP-binding protein Era [Edwardsiella tarda FL6-60] Length = 301 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 3/290 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 3 EEKTYCGFIAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM R + S+I ++V VV+ + +L ++ +IL Sbjct: 63 TPGLHIEEKRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVLNKLRDLKCPVIL 121 Query: 136 ILNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V LL + ++ + +SA KG D + + LP A + Sbjct: 122 AINKVDNVVDKTALLPHIQFLSQQMNFLDVVPISAEKGTNVDAIARIVRQRLPQAEHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 + I+D +EI REKL L +E+PYS V E++ + G I +I VER Sbjct: 182 EEYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFAPNERGGYDIHGLILVERDG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G IKTI +EA++++ + + VHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGSKIKTIGIEARQDMEAMFDAKVHLELWVKVKSGWADDERA 291 >gi|309972853|gb|ADO96054.1| GTP-binding protein [Haemophilus influenzae R2846] Length = 302 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 158/291 (54%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 6 DKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDT 65 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S I D++ VVD + +L ++ + ++L Sbjct: 66 PGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLA 124 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D +K + L +++ K F +SA +G+ ++ + +L + Sbjct: 125 INKVDNIKNKDDLLPFITDLSGKFNFAH-IVPISAQRGNNIHELEKIVRQSLREGVHHFP 183 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 184 EDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVEREG 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 QKKMVIGAGGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|145300360|ref|YP_001143201.1| GTP-binding protein Era [Aeromonas salmonicida subsp. salmonicida A449] gi|142853132|gb|ABO91453.1| GTP-binding protein Era [Aeromonas salmonicida subsp. salmonicida A449] Length = 299 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 156/291 (53%), Gaps = 3/291 (1%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + D + G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++ Sbjct: 1 MTDTTYCGFVAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEDNHQTIYV 60 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPG+ K + ++LM R + S++ +V VVD K + +L ++ ++ Sbjct: 61 DTPGLHIEEKRAINRLMNRAATSSLGDVAMVVFVVDGTHWTK-DDEMVLGKLRHLPCPVV 119 Query: 135 LILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L +NKID VK E LL E + + +SA KG + + + LP + + Sbjct: 120 LAVNKIDNVKDKEDLLPHLEWLGQQMKFSHILPISAEKGTNVEKIREWSKDLLPENNFFF 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D ++D +EI REKL +E+PYS V E+++ ++ G I +I VER Sbjct: 180 PEDYVTDRSSRFMASEIIREKLMRFTGEELPYSVTVEIERFKVEESGIYHINALILVERD 239 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G+ IKTI EA+ ++ + + V L L+VKV+ W D + Sbjct: 240 GQKKMVIGNKGEKIKTIGTEARIDMERLFQNKVFLELWVKVKAGWADDERA 290 >gi|313886114|ref|ZP_07819849.1| ribosome biogenesis GTPase Era [Porphyromonas asaccharolytica PR426713P-I] gi|332300531|ref|YP_004442452.1| GTP-binding protein Era-like-protein [Porphyromonas asaccharolytica DSM 20707] gi|312924460|gb|EFR35234.1| ribosome biogenesis GTPase Era [Porphyromonas asaccharolytica PR426713P-I] gi|332177594|gb|AEE13284.1| GTP-binding protein Era-like-protein [Porphyromonas asaccharolytica DSM 20707] Length = 306 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 159/290 (54%), Gaps = 2/290 (0%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + +SG V++VG N GKSTL+N VG ++SI+T K QTTR + GIV+ Q+V+ DT Sbjct: 14 EGYKSGFVSIVGNPNVGKSTLMNYLVGERISIITSKAQTTRHRILGIVNSDHMQVVYSDT 73 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ + M S ++ AD++ V D+ E + HD ++ + + S +I+++ Sbjct: 74 PGVLQPSYKLQERMRAYSEQALEDADLLLYVTDTMEE-RDKHHDFVERVQRLSCPIIVVI 132 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D + L E + + ++ + VSA + + + LP++P + D Sbjct: 133 NKVDLTDQKHLEELVDYWHSIIPQAEIIPVSALRQFNLAPLKKRIEELLPVSPPYFEQDA 192 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P F +EI REK + H+E+PY+ VV E++ E D I +R VI VER SQK Sbjct: 193 LTDRPARFFVSEIIREKALQYYHQEVPYAVEVVVEEFVESPD-RIDMRCVILVERESQKG 251 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 I++G G IK + A+K++ ++ +HL L V+V KDW + Q Sbjct: 252 IIIGHKGSAIKRLGTSARKDLERFFDKHIHLTLLVRVDKDWRQSDQALTQ 301 >gi|119944413|ref|YP_942093.1| GTP-binding protein Era [Psychromonas ingrahamii 37] gi|119863017|gb|ABM02494.1| GTP-binding protein Era [Psychromonas ingrahamii 37] Length = 300 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 157/285 (55%), Gaps = 5/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G KVSI + K QTTR + GI +E + Q +F+DTPG+ Sbjct: 6 GLVAIVGRPNVGKSTLINALLGQKVSITSRKAQTTRHRILGIDTEGDYQTIFVDTPGLHI 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + ++LM R + S+I ++V VV+ +H ++ +L + ++L +NKI Sbjct: 66 EEKRAINRLMNRAASSSINDVEMVIFVVEGTHWNEDDDM--VLSKFKYLKCPVVLAVNKI 123 Query: 141 DCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V+ E LL E K + +SA KG + + + LP + + D I+ Sbjct: 124 DNVEDKELLLPHLEALGKRYNFKHILPMSAKKGDNIEKIRTWAKEVLPESEHYFPEDYIT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +E+ REKL L E+PYS V E+++++ +G + I +I VER QK+++ Sbjct: 184 DRSSRFMASEMVREKLMRFLGDELPYSVTVEIEQFKQQANGVLHINALILVEREGQKRMV 243 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +G G+ +K I +A+ ++ E+ + V L ++VKV+ W D + Sbjct: 244 IGNKGEKLKAIGKQARIDMEELFDSKVFLEIWVKVKSGWADDDRA 288 >gi|170719011|ref|YP_001784171.1| GTP-binding protein Era [Haemophilus somnus 2336] gi|189037650|sp|B0USS2|ERA_HAES2 RecName: Full=GTPase Era gi|168827140|gb|ACA32511.1| GTP-binding protein Era [Haemophilus somnus 2336] Length = 304 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 159/288 (55%), Gaps = 9/288 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q V++DTPG+ Sbjct: 13 GFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGVYQAVYVDTPGLHI 72 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++LM R + S I D++ VVD N D +L ++ + + ++L +NK Sbjct: 73 EEKRAINRLMNRAASSAIGDVDLIIFVVDG---THWNDDDEMVLNKLRRAKAPVVLAINK 129 Query: 140 IDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D +K E L +++ KL F E +SA +G+ ++ + ++L + D Sbjct: 130 VDNIKNKDELLPFITDVSQKLEFKE-IIPISAQRGNNIHNLEKIVRTSLRKGVHHFPEDY 188 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D +EI REKL +E+PYS V E+++ G I +I VER QKK Sbjct: 189 VTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNDRGIYEINGLILVEREGQKK 248 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++G GQ +KTI EA++++ + + VHL L+VKV+ W D + Sbjct: 249 MVIGAKGQKLKTIGTEARQDMERLFDNKVHLELWVKVKSGWADDERAL 296 >gi|72382687|ref|YP_292042.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL2A] gi|72002537|gb|AAZ58339.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Prochlorococcus marinus str. NATL2A] Length = 313 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 160/296 (54%), Gaps = 13/296 (4%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D Q++ +SG +AL+G N GKST +N+F+G K++I + QTTR+ ++ I++ ++SQI+ Sbjct: 5 DLSQEDFKSGFIALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRLKVILTNEKSQII 64 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 F+DTPGI + +++ + +I D V ++ ++ +L I + Sbjct: 65 FVDTPGIHKPHHLLGERLVQSAKRSIGDVDAVLVIFEASHSPGRGDAFILNLIRNLKIPV 124 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKT----FMVSATKGHGCDDVLNYLCSTLPLA 189 I+ LNK D + + E+ + F+E T F SA G GC+++++ + TLP Sbjct: 125 IVALNKWDLLALSQFKERKK--EYFEFLEGTNWPVFCCSALTGQGCNELISEIEETLPFG 182 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-------VTEKWEEKKDGSI 242 P +Y +D D P AE RE++ ++ +E+P+S V +T K + ++ Sbjct: 183 PQLYPSDMNCDHPEKFLIAEFIREQVLINTREEVPHSVAVSIDKIEDITSKKKSEQKSRT 242 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I I VE+ SQK I++GK G +K I E++ +I ++ V+L LFVKV DW Sbjct: 243 GILATICVEKKSQKGILIGKGGSMLKKIGQESRMQIQTLINGNVYLELFVKVVPDW 298 >gi|172037536|ref|YP_001804037.1| GTP-binding protein Era [Cyanothece sp. ATCC 51142] gi|254783295|sp|B1WT49|ERA_CYAA5 RecName: Full=GTPase Era gi|171698990|gb|ACB51971.1| GTP-binding protein [Cyanothece sp. ATCC 51142] Length = 314 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 101/283 (35%), Positives = 157/283 (55%), Gaps = 10/283 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N+ +G K++I + QTTR+ ++GI++ ++QI+F+DTPGI Sbjct: 21 KSGFVGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTDKAQIIFVDTPGI 80 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + K++++ + + I DI+ LVVDS + I DLLK + + +IL L Sbjct: 81 HKPHHTLGKIIVKNAKTAINSVDIILLVVDSSVKSGGGDRYIIDLLKTV---NQPVILGL 137 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK D + E+ E E L+ M+ SA G G + + N L L P+ Y Sbjct: 138 NKSDQ-QTEKYQEIDESYANLIQDHNWPMIKFSALTGDGVETLQNTLIEQLEPGPYYYPP 196 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D P AE+ RE++ +E+P+S V EK EE + I I VER SQ Sbjct: 197 DLITDQPERFIMAELIREQILQLTRQEVPHSVAVTIEKVEESPKIT-KIFAAINVERSSQ 255 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G+ G +K I A+++I +++ V L LFVKV+ W Sbjct: 256 KGIIIGQKGNMLKAIGTTAREQIQKLIAGEVFLKLFVKVEPQW 298 >gi|124026406|ref|YP_001015521.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL1A] gi|123961474|gb|ABM76257.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL1A] Length = 313 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 161/296 (54%), Gaps = 13/296 (4%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D Q++ +SG +AL+G N GKST +N+F+G K++I + QTTR+ ++ I++ ++SQI+ Sbjct: 5 DLSQEDFKSGFIALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRLKVILTNEKSQII 64 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 F+DTPGI + +++ + +I D V ++ ++ +L I + Sbjct: 65 FVDTPGIHKPHHLLGERLVQSAKRSIGDVDAVLVIFEASHSPGRGDAFILNLIRNLKIPV 124 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKT----FMVSATKGHGCDDVLNYLCSTLPLA 189 I+ LNK D + ++ E+ + L F+E T F SA G GC ++++ + TLP Sbjct: 125 IVALNKWDLLALSQIKERKK--EYLEFLEGTNWPVFCCSALTGQGCIELISEIEETLPFG 182 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-------VTEKWEEKKDGSI 242 P +Y +D D P AE RE++ ++ +E+P+S V +T K + ++ Sbjct: 183 PQLYPSDMNCDHPEKFLIAEFIREQVLIYTREEVPHSVAVSIDKIEDITSKKKSEQKSRT 242 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I I VE+ SQK I++GK G +K I E++ +I ++ V+L LFVKV DW Sbjct: 243 GILATICVEKKSQKGILIGKGGSMLKKIGQESRMQIQTLINGNVYLELFVKVVPDW 298 >gi|290476133|ref|YP_003469033.1| GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division [Xenorhabdus bovienii SS-2004] gi|289175466|emb|CBJ82269.1| GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division [Xenorhabdus bovienii SS-2004] Length = 301 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 160/290 (55%), Gaps = 15/290 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGVYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 K + ++LM R + S+I ++V VV+ + E+ VN ++ +IL Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEGTHWTADDEMVVN------KLRNLHCPVILA 122 Query: 137 LNKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V + +L ++ ++ F++ +SA KG D + + + +P A + Sbjct: 123 INKVDNVTDKAILLPHIGFLSKQMNFLD-VVPISAEKGMNVDTIAKIVRAHIPEAGHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L E+PYS V E++ + G I +I VER Sbjct: 182 DDYITDRSQRFMASEIIREKLMRFLGDELPYSVTVEIEQFVTNERGGYTIHGLILVEREG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G IKTI +EA++++ ++ + VHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGSKIKTIGIEARQDMEKLFDNKVHLELWVKVKAGWADDERA 291 >gi|225024666|ref|ZP_03713858.1| hypothetical protein EIKCOROL_01548 [Eikenella corrodens ATCC 23834] gi|224942555|gb|EEG23764.1| hypothetical protein EIKCOROL_01548 [Eikenella corrodens ATCC 23834] Length = 304 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 161/287 (56%), Gaps = 9/287 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ +++ SQ +F+DTPG Sbjct: 16 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKITGVYTDERSQFIFVDTPG- 74 Query: 81 FNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 F + + L RL+ + I D+V VV++ R + + +++ + K +IL++ Sbjct: 75 FQTRHR-NALNDRLNQNVTEAIGGVDVVAFVVEAMRFSEAD-RAVIRLLPKHLP-VILVV 131 Query: 138 NKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID + LE+ E + VSA G ++L L LP + +Y D Sbjct: 132 NKIDRANSKAELEEFIETVCREFDFAGAEAVSAKHGLRIGELLARLRPHLPESVPLYPED 191 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D AEI REKLF HL +E+PY++ V E++EE +DG I + V++ QK Sbjct: 192 AVTDRSARFLAAEIVREKLFRHLGEELPYAANVAVEQFEE-EDGLYRIYIAVLVDKDGQK 250 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++GK G+ +K IS EA+ ++ ++ E V L ++VKV+ W D + Sbjct: 251 AIIIGKGGEKLKKISTEARLDMEKLFETKVFLKVWVKVKSGWADDAR 297 >gi|326381616|ref|ZP_08203310.1| GTPase Era [Gordonia neofelifaecis NRRL B-59395] gi|326199863|gb|EGD57043.1| GTPase Era [Gordonia neofelifaecis NRRL B-59395] Length = 298 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 154/290 (53%), Gaps = 10/290 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG + VG N GKSTL N VG KV+I +++ QTTR +RGIV+ ++Q++ +DTPG+ Sbjct: 5 RSGFICFVGRPNTGKSTLTNALVGDKVAITSNRPQTTRHTIRGIVNRPDAQLILVDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRLILILN 138 + + + L T D++C+ + + + +++EI + +R + I+ Sbjct: 65 HRPRTLLGQRLNDLVRETYADVDVICVCIPADEAIGPGDRRIIEEIQATTPRTRKVGIVT 124 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCD---DVLNYLCSTLPLAPWVYS 194 KID V E+++ Q +KL+ + + SA G D DVL LC P Y Sbjct: 125 KIDRVGHEKVVAQLLELSKLMGPDAEVVPCSAKSGKQLDVLGDVLVSLCEE---GPAFYP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 +++D P AE RE + E+P+S VV E+ ++D I+ + ++YVER Sbjct: 182 DGELTDEPEQVLMAEFIREAALEGVRDELPHSLAVVIEEVIPREDSDIVDVHAILYVERD 241 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++G G +K + A+ +I +L ++L L VKV KDW DPK Sbjct: 242 SQKGIIIGHKGSRLKEVGTTARAQIERLLGTRIYLDLHVKVAKDWQRDPK 291 >gi|113461382|ref|YP_719451.1| GTP-binding protein Era [Haemophilus somnus 129PT] gi|122945400|sp|Q0I4Z4|ERA_HAES1 RecName: Full=GTPase Era gi|112823425|gb|ABI25514.1| GTP-binding protein era [Haemophilus somnus 129PT] Length = 300 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 159/288 (55%), Gaps = 9/288 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q V++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGVYQAVYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 K + ++LM R + S I D++ VVD N D +L ++ + + ++L +NK Sbjct: 69 EEKRAINRLMNRAASSAIGDVDLIIFVVDG---THWNDDDEMVLNKLRRAKAPVVLAINK 125 Query: 140 IDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D +K E L +++ KL F E +SA +G+ ++ + ++L + D Sbjct: 126 VDNIKNKDELLPFITDVSQKLEFKE-IIPISAQRGNNIHNLEKIVRTSLRKGVHHFPEDY 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D +EI REKL +E+PYS V E+++ G I +I VER QKK Sbjct: 185 VTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNDRGIYEINGLILVEREGQKK 244 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++G GQ +KTI EA++++ + + VHL L+VKV+ W D + Sbjct: 245 MVIGAKGQKLKTIGTEARQDMERLFDNKVHLELWVKVKSGWADDERAL 292 >gi|86739978|ref|YP_480378.1| GTP-binding protein Era [Frankia sp. CcI3] gi|86566840|gb|ABD10649.1| GTP-binding protein Era [Frankia sp. CcI3] Length = 307 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 153/293 (52%), Gaps = 12/293 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G LVG NAGKSTL N VG KV+I + + QTTR +RGIV ++Q+V +DTPG+ Sbjct: 10 RAGFACLVGRPNAGKSTLTNALVGTKVAITSGRPQTTRHAIRGIVHRDDAQLVLVDTPGL 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + +T+ D+V + + + I + L + KR+ ++ IL Sbjct: 70 HRPRTLLGQRLNDVVRATLSEVDVVGFCMPADEPVGRGDRFIAEELSRLPKRTP-VVAIL 128 Query: 138 NKIDCVK-PERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 K D V P+R+ + EIA F VSA + + + + L + LP P +Y Sbjct: 129 TKTDRVADPDRIGARLLEIAGLGEF-SDIVPVSAVRSYQVAVLADVLVARLPAGPALYPG 187 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQVIYV 250 +++D P AE+ RE + E+P+S VV E+ ++ + +R ++V Sbjct: 188 GELTDEPEQVMVAELVREAALEGVRDELPHSLAVVVEEMVSREGRPAQRPLLDVRVNVFV 247 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ERPSQK I++G G +K + A+ +I +L PV L L VKV KDW DP+ Sbjct: 248 ERPSQKAIVIGTGGSRLKEVGSRARTQIEALLGTPVFLDLHVKVAKDWQRDPR 300 >gi|320529427|ref|ZP_08030515.1| GTP-binding protein Era [Selenomonas artemidis F0399] gi|320138393|gb|EFW30287.1| GTP-binding protein Era [Selenomonas artemidis F0399] Length = 298 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 153/281 (54%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 ++ +SG A++G NAGKSTL+N +G K++I++ K QTTRS + I++++++Q++FLDT Sbjct: 2 NHYKSGFAAVIGRPNAGKSTLINALIGQKIAIMSDKPQTTRSRILCILTQEDAQVIFLDT 61 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ K M + + + D+V VVD+ ++ +LK++ K ++L + Sbjct: 62 PGVHKPKHKLGSHMAKATEGALHGVDVVVFVVDATEKMGAGEQYILKQLEKVRVPVLLAV 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID ++ E L K +SA +L+ + LP P Y D Sbjct: 122 NKIDLLRREETLPIIASYAKTYDFAGIVPISARAEENLAGLLDEIKKHLPEGPRYYPEDM 181 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P AE+ REK EIP++ V E+ + G + +R VIYVER SQK Sbjct: 182 VTDQPERLIIAELVREKALELTRDEIPHAVAVDIEEITTRAKGDVYVRAVIYVERESQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++G G ++TI A+ +I +L V+L L+VK ++DW Sbjct: 242 IVIGARGALLRTIGARARADIETLLGAKVYLDLWVKTRRDW 282 >gi|227495128|ref|ZP_03925444.1| GTP-binding protein Era [Actinomyces coleocanis DSM 15436] gi|226831580|gb|EEH63963.1| GTP-binding protein Era [Actinomyces coleocanis DSM 15436] Length = 352 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 151/292 (51%), Gaps = 7/292 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R+G +A+VG N GKSTL N VG K++I + + +TTR VRG+V + Q+V +DTP Sbjct: 54 NFRAGFIAIVGRPNVGKSTLTNALVGEKIAITSMRPETTRHNVRGVVHGDDYQLVLVDTP 113 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G + + + + ++ D++ + S +++ + +++ + ++ + Sbjct: 114 GYHRPRTLLGRRLNEMVRESLSEVDVIVFCLPSDQKIGPGDEFIARQLRGLRAPIVAVAT 173 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K D V P RL+E +KL ++ VSA K D + L + +P P +Y D Sbjct: 174 KTDKVAPPRLMEHLMDIDKLGDFKEIVPVSAHKDRQIDVLKEVLANLMPKCPPLYPQDIY 233 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGS-----ILIRQVIYVE 251 SD P AE+ RE + E+P+S V E+ EKK G + I +YVE Sbjct: 234 SDEPRDVMIAELIREAALEGVRAELPHSLAVQVEEIVEREKKPGQKYPAMLDIHVNLYVE 293 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 R SQK I++GK G +K + A+ I E+L++ V+L L V+ KDW DPK Sbjct: 294 RDSQKAIIIGKGGARLKAVGTRARIGIEELLKRRVYLDLHVRTAKDWQSDPK 345 >gi|229493118|ref|ZP_04386910.1| GTP-binding protein Era [Rhodococcus erythropolis SK121] gi|229319849|gb|EEN85678.1| GTP-binding protein Era [Rhodococcus erythropolis SK121] Length = 305 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 158/292 (54%), Gaps = 9/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG+K++I + + QTTR +RGIV + +Q++ +DTPG+ Sbjct: 7 RSGFVCFVGRPNTGKSTLTNALVGSKIAITSSRPQTTRHTIRGIVHREHAQLILVDTPGL 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRLILILN 138 + + + L T D++CL + + + +++++ + + ++L+ I+ Sbjct: 67 HKPRTLLGQRLNDLVRDTYSEVDVICLCIPADEAIGPGDRWIVQQVRQMAPKTKLVGIVT 126 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V + + +Q + L+ E + VSA G + +++ L + P Y + Sbjct: 127 KIDKVSRDAVGKQLLALSTLLGPESEVVPVSAKSGEQVEILVDVLAGLMDEGPAFYPDGE 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE-----KWEEKKDGSIL-IRQVIYVE 251 ++D P AE+ RE L +E+P+S VV E + +K G +L + ++YVE Sbjct: 187 LTDEPEEVLMAELIREAALEGLGEELPHSLAVVIEEVIPREGRTEKQGEMLDVHALLYVE 246 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 RPSQK I++GK G ++ + A+ +I ++L + L L VKV KDW DPK Sbjct: 247 RPSQKGIVIGKGGARLREVGTSARLQIEKLLGVRIFLELHVKVAKDWQRDPK 298 >gi|119961417|ref|YP_947969.1| GTP-binding protein Era [Arthrobacter aurescens TC1] gi|119948276|gb|ABM07187.1| GTP-binding protein Era [Arthrobacter aurescens TC1] Length = 347 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 155/308 (50%), Gaps = 15/308 (4%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F+ DF +G LVG NAGKSTL N VG KV+I + K QTTR +RGIV Sbjct: 35 FDADADF--GGFHAGFSVLVGRPNAGKSTLTNALVGQKVAITSAKPQTTRHTIRGIVHRD 92 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 ++Q++ +DTPG+ + K + L T+ D + + ++ ++ + ++A Sbjct: 93 DAQLILVDTPGLHRPRTLLGKRLNELVADTLAEVDAIGFCLPANEKIGPGDKYIAAQLAA 152 Query: 129 RSSRLILIL-NKIDCVKPERLLEQAEIANKL---VFIEKTFM----VSATKGHGCDDVLN 180 + I+ L K D V + L EQ L V E+ + VSA G V + Sbjct: 153 VGRKPIVALVTKTDLVDRQALTEQLLAVAALGRDVLGEQGWADIVPVSAADGFQVSTVAD 212 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEE 236 L S +P +P +Y +++D P AE+ RE + E+P+S VV E + Sbjct: 213 VLISHMPSSPPLYPDGELTDEPEAVMIAELIREAALEGVRDELPHSLAVVVEEIVPREGR 272 Query: 237 KKDGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 +D +L +R +YVERPSQK I++GK G ++ + A+K I +L ++L L VKV Sbjct: 273 TEDNPLLDVRVNLYVERPSQKAIIIGKGGSRLREVGTNARKGIETLLGTRIYLDLHVKVA 332 Query: 296 KDWGHDPK 303 KDW DPK Sbjct: 333 KDWQRDPK 340 >gi|89075087|ref|ZP_01161528.1| GTP-binding protein Era [Photobacterium sp. SKA34] gi|90580326|ref|ZP_01236133.1| GTP-binding protein Era [Vibrio angustum S14] gi|89049174|gb|EAR54739.1| GTP-binding protein Era [Photobacterium sp. SKA34] gi|90438628|gb|EAS63812.1| GTP-binding protein Era [Vibrio angustum S14] Length = 301 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 160/292 (54%), Gaps = 8/292 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D G +A+VG N GKSTL+NR VG K+SI + K QTTR + G+ + Q V++DT Sbjct: 3 DKQHCGFIAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDT 62 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + +L ++AK +L+ Sbjct: 63 PGLHIEEKRTINRLMNRAASSSLTDVELVLFLVDGTM-WTADDEMVLNKLAKSQLPTVLL 121 Query: 137 LNKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D VK + L E+A+K+ F++ VSA G D V + LP + + Sbjct: 122 VNKVDNVKDKHELFPHLQELASKMEFVD-VIPVSAKHGTNIDAVEKIVRQHLPECEYYFP 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVER 252 + ++D +EI REKL E+PY+ V E+++ + DG I +I VER Sbjct: 181 EEYVTDRSQRFMASEIIREKLMRFTGDELPYAVTVEIERFDYNPETDG-FDINGLILVER 239 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G IK I EA+ ++ ++ E+ V+L L+VKV+ W D + Sbjct: 240 KGQKKMVIGKGGDKIKVIGREARLDMEDLFERKVYLELWVKVKSGWADDERA 291 >gi|297194461|ref|ZP_06911859.1| GTP-binding protein Era [Streptomyces pristinaespiralis ATCC 25486] gi|197718729|gb|EDY62637.1| GTP-binding protein Era [Streptomyces pristinaespiralis ATCC 25486] Length = 321 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 101/317 (31%), Positives = 161/317 (50%), Gaps = 17/317 (5%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 M G + + + R+G VG NAGKSTL N VG KV+I + + QTTR Sbjct: 1 MTSGTMGAMSARTQSSEAPHRAGFACFVGRPNAGKSTLTNALVGQKVAITSTRPQTTRHT 60 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKV 117 VRGIV E+Q++ +DTPG+ + + + +R +W+ + D++ + + ++L Sbjct: 61 VRGIVHRPEAQLILVDTPGLHKPRTLLGERLNDIVRTTWAEV---DVIGFCLPADQKLGP 117 Query: 118 NIHDLLKEIAK-RSSRLILILNKIDCVKPERLLEQAEIANKL---VFIE--KTFMVSATK 171 + KE+A + + + I+ K D V + L EQ ++L + IE + VSA Sbjct: 118 GDRFIAKELAGIKKTPKVAIITKTDLVDSKTLAEQLIAVDRLGKELGIEWAEIVPVSAVG 177 Query: 172 GHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVT 231 V + L LP +P +Y ++D P AE+ RE + E+P+S VV Sbjct: 178 DTQVQLVADLLIPLLPESPPLYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVV 237 Query: 232 EKWEEKKDGS-----ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPV 286 E+ ++D + I +Y+ERPSQK I++G G+ +K + +++K I +L PV Sbjct: 238 EEMLPREDRPADRPLLDIHANVYIERPSQKGIIIGPKGKRLKEVGTKSRKHIEALLGTPV 297 Query: 287 HLILFVKVQKDWGHDPK 303 L L VKV KDW DPK Sbjct: 298 FLDLHVKVAKDWQRDPK 314 >gi|225548859|ref|ZP_03769836.1| GTP-binding protein Era [Borrelia burgdorferi 94a] gi|225370462|gb|EEG99898.1| GTP-binding protein Era [Borrelia burgdorferi 94a] Length = 290 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 161/294 (54%), Gaps = 15/294 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M++ +S+I +++ ++D + + +L+ I + ++ILNKI Sbjct: 62 HLSKKKFNIAMMKNIYSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFM-------VSATKGHGCDDVLNYLCSTLPLAPWVY 193 D LE +I F+++ + +SA K +++ N + P Y Sbjct: 122 D-------LENTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYY 174 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + +D + +EI REK +L +E+PYS V + E KK GS+ IR I+V Sbjct: 175 PQEYYTDQEINFRISEIIREKAIENLKEELPYSLYVDIDTLENKK-GSLFIRANIFVANE 233 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 SQK I++GKNG+ IK+I A+K IA+I E +L L VK++K+W + + + Sbjct: 234 SQKGIIVGKNGKEIKSIGERARKTIAKIFETKCNLFLQVKLKKNWNKEDRLIKR 287 >gi|15894577|ref|NP_347926.1| GTP-binding protein Era [Clostridium acetobutylicum ATCC 824] gi|21263597|sp|Q97JI5|ERA_CLOAB RecName: Full=GTPase Era gi|15024224|gb|AAK79266.1|AE007641_12 ERA GTPase [Clostridium acetobutylicum ATCC 824] gi|325508709|gb|ADZ20345.1| GTP-binding protein Era [Clostridium acetobutylicum EA 2018] Length = 296 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 153/282 (54%), Gaps = 1/282 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N +G K+SIV+ K QTTR+ ++ I++ +E QIVF+DTPG+ Sbjct: 3 KSGFVTIIGRPNVGKSTLLNHIMGEKLSIVSSKPQTTRNNIQTILTGEEYQIVFVDTPGM 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N + + M++++ ++ D+ V E+K +L+++ + L++NKI Sbjct: 63 HNPRHKLGEYMVKVAKESMNEVDVALFVTTPDVEVKRGDLHILEQLKSAKVPVFLVVNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D ERL + ++ ++ +SA KG D ++ + L P Y D I D Sbjct: 123 DETTEERLAATLKNYSEAFEFQEIIPISAQKGKNVDKLIELMVKHLNEGPKYYPDDMIID 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AEI REK L +E+P+ V + +E+ + I I E+ S K I++ Sbjct: 183 KQERFIIAEIIREKALRFLSQEVPHGIAVEILQMKEENE-KYKIEATIMCEKDSHKGIII 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 GK G+ +K IS A+K + L++ V++ ++VKV+KDW P Sbjct: 242 GKGGEMLKKISQSARKSAEKFLDKRVNMKIWVKVKKDWRDSP 283 >gi|330446942|ref|ZP_08310593.1| GTP-binding protein Era [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491133|dbj|GAA05090.1| GTP-binding protein Era [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 301 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 160/293 (54%), Gaps = 8/293 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D G +A+VG N GKSTL+NR VG K+SI + K QTTR + G+ + Q V++DT Sbjct: 3 DKQHCGFIAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDT 62 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + +L ++AK +L+ Sbjct: 63 PGLHIEEKRTINRLMNRAASSSLTDVELVLFLVDGTMWTD-DDEMVLNKLAKSQLPTVLL 121 Query: 137 LNKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D VK + L E+A+K+ F++ VSA G D V + LP + + Sbjct: 122 VNKVDNVKDKHELFPHLQELASKMEFVD-VVPVSAKHGTNIDAVEKIVREHLPECEYYFP 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVER 252 + ++D +EI REKL E+PYS V E+++ + DG I +I VER Sbjct: 181 EEYVTDRSQRFMASEIIREKLMRFTGDELPYSVTVEIERFDYNPETDG-FDINGLILVER 239 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++GK G IK I EA+ ++ ++ E+ V+L L+VKV+ W D + Sbjct: 240 KGQKKMVIGKGGDKIKVIGREARLDMEDLFERKVYLELWVKVKSGWADDERAL 292 >gi|313665394|ref|YP_004047265.1| GTP-binding protein Era [Mycoplasma leachii PG50] gi|312949205|gb|ADR23801.1| GTP-binding protein Era [Mycoplasma leachii PG50] Length = 301 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 161/290 (55%), Gaps = 4/290 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDTPG 79 +SG V+++G N GKSTL+N+ +G K+SIVT+K QTTR+ +RGI+++K+ QIVF+DTPG Sbjct: 5 KSGFVSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPG 64 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K K++ + + K D++ + S + N LLK+I IL++ K Sbjct: 65 VHTTKKQLDKVLNTSALKSTKDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKILVITK 124 Query: 140 IDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSADQ 197 D V E+L+ +A E + ++ + S+ + +L + + L + Y D Sbjct: 125 ADSVTKEQLILKANEWSAYQDQFDEIIITSSITNLNIEKLLELIVNNLSDNDYQFYDDDI 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D EI RE + L +E+P+S V+ E E+ + + I I VER SQK Sbjct: 185 LTDQSDRFMIKEIIRENILLKTGQEVPHSVAVLVEHLEQ-NETEMNISAAIIVERQSQKS 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 I++GK G I I ++KK+I + ++ ++L LFVKVQ++W + P + Sbjct: 244 IIIGKKGVKISDIRYKSKKQIQTLFKKHINLELFVKVQENWRNSPSLIKK 293 >gi|254670527|emb|CBA06322.1| GTP-binding protein Era [Neisseria meningitidis alpha153] Length = 313 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 104/290 (35%), Positives = 160/290 (55%), Gaps = 11/290 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 20 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDT 79 Query: 78 PGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 PG D + L RL+ + + D V VV++ R + +LK++ K + +I Sbjct: 80 PGF--QTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDAD-RVVLKQLPKHTP-VI 135 Query: 135 LILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 L++NKID K +R +A +A VSA G ++L L LP + Sbjct: 136 LVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELLKPYLPESVP 195 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V+ Sbjct: 196 MYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVD 254 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 255 KESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 304 >gi|307249747|ref|ZP_07531726.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858255|gb|EFM90332.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 304 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E + Q +++D Sbjct: 7 QPKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVD 66 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM R + S I D++ VV+ + + +L ++ + ++L Sbjct: 67 TPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDD-EMVLNKLRAAKAPVVL 125 Query: 136 ILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D +K E L E++ K F E +SA +G + + +L + Sbjct: 126 AINKVDNIKEKDELLPHITELSKKFDFAE-ILPISAQRGKNVHILQKIVRKSLREGGHHF 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 185 PEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNERGTYEINGLILVERE 244 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 245 GQKKMVIGAKGQKIKTIGMEARADMERLFDNKVHLELWVKVKAGWADDERAL 296 >gi|126208026|ref|YP_001053251.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae L20] gi|190149855|ref|YP_001968380.1| GTP-binding protein Era-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307256563|ref|ZP_07538344.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307263178|ref|ZP_07544799.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189037248|sp|A3MZR0|ERA_ACTP2 RecName: Full=GTPase Era gi|226741164|sp|B3GX86|ERA_ACTP7 RecName: Full=GTPase Era gi|126096818|gb|ABN73646.1| GTP-binding protein Era-like protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914986|gb|ACE61238.1| GTP-binding protein Era-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306864973|gb|EFM96875.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871540|gb|EFN03263.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 304 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E + Q +++D Sbjct: 7 QPKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVD 66 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM R + S I D++ VV+ + + +L ++ + ++L Sbjct: 67 TPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDD-EMVLNKLRSAKAPVVL 125 Query: 136 ILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D +K E L E++ K F E +SA +G + + +L + Sbjct: 126 AINKVDNIKEKDELLPHITELSQKFDFAE-ILPISAQRGKNVHILQKIVRKSLREGVHHF 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 185 PEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNERGTYEINGLILVERE 244 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 245 GQKKMVIGAKGQKIKTIGMEARADMERLFDNKVHLELWVKVKAGWADDERAL 296 >gi|269960404|ref|ZP_06174777.1| GTP-binding protein [Vibrio harveyi 1DA3] gi|269834831|gb|EEZ88917.1| GTP-binding protein [Vibrio harveyi 1DA3] Length = 320 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 168/292 (57%), Gaps = 8/292 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ ++ + Q +++DT Sbjct: 22 ENQHCGFIAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDT 81 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD K + +L ++ K + ++L Sbjct: 82 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTK-DDEMVLTKLQKSNFPVVLC 140 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V + E ++ A+++ K+ F++ +SA +G D + ++ LP A + Sbjct: 141 VNKVDNVQDRNEVMMHMADMSKKMDFVD-VVPISAKQGKNIDVLRKHVRDHLPEATHHFP 199 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVER 252 + ++D +EI REKL +E+PYS V E+++ + DG I +I VER Sbjct: 200 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPETDG-FHINALILVER 258 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 259 NGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 310 >gi|308388874|gb|ADO31194.1| putative GTPase [Neisseria meningitidis alpha710] Length = 311 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 164/301 (54%), Gaps = 13/301 (4%) Query: 7 TFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 TF E + D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI + Sbjct: 9 TFLAEER--AADGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYT 66 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLL 123 + +Q VF+DTPG D + L RL+ + + D V VV++ R + +L Sbjct: 67 DDTAQFVFVDTPGF--QTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDAD-RVVL 123 Query: 124 KEIAKRSSRLILILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLN 180 K++ K + ++L++NKID K +R +A +A VSA G ++L Sbjct: 124 KQLPKHTP-VVLVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLE 182 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 + LP + +Y D ++D EI REKLF +L +E+PY+ V E++EE +DG Sbjct: 183 LIKPYLPESVPMYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDG 241 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I + V++ SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W Sbjct: 242 LNRIYIAVLVDKESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWAD 301 Query: 301 D 301 D Sbjct: 302 D 302 >gi|239917732|ref|YP_002957290.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665] gi|281413773|ref|ZP_06245515.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665] gi|239838939|gb|ACS30736.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665] Length = 321 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 155/303 (51%), Gaps = 17/303 (5%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG V+LVG NAGKSTL N VG KV+I + K QTTR +RGIV ++ Q+V +DT Sbjct: 12 DGFRSGFVSLVGRPNAGKSTLTNALVGEKVAITSSKPQTTRHTIRGIVHREDFQLVLVDT 71 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 PG+ + + + L T+ D V + + + + + ++++ + ++ + Sbjct: 72 PGLHRPRTLLGERLNDLVAETLSEVDAVGMCLPADEAIGPGDRFIAQQLSYLHRTPVVAV 131 Query: 137 LNKIDCVKPERLLEQ----AEIANKLVFIEK-------TFMVSATKGHGCDDVLNYLCST 185 + K D V PE+L+ Q + +++ E VSA G DDVL Sbjct: 132 VTKTDKVGPEQLMAQLVAVTALGEEVLGPENGGEGFAAVVPVSAVAGRQVDDVLGVFAGL 191 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS---- 241 LP P +Y +++D P AE+ RE + E+P+S VV ++ ++D Sbjct: 192 LPAGPPLYPDGELTDEPEAVMVAELIREAALEGVRDELPHSVAVVVDEMSLREDRPADRP 251 Query: 242 -ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + + ++VER SQK I++GK G ++ I +A+ I +L VHL L VKV K+W Sbjct: 252 LMDVWANVFVERDSQKGIIIGKGGSRLREIGAQARAGIERMLGTKVHLDLRVKVAKEWQR 311 Query: 301 DPK 303 DPK Sbjct: 312 DPK 314 >gi|307260993|ref|ZP_07542675.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869295|gb|EFN01090.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 304 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E + Q +++D Sbjct: 7 QPKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVD 66 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM R + S I D++ VV+ + + +L ++ + ++L Sbjct: 67 TPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDD-EMVLNKLRSAKAPVVL 125 Query: 136 ILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D +K E L E++ K F E +SA +G + + +L + Sbjct: 126 AINKVDNIKEKDELLPHITELSQKFDFAE-ILPISAQRGKNVHILQKIVRKSLREGVHHF 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 185 PEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNERGTYEINGLILVERE 244 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 245 GQKKMVIGAKGQKIKTIGMEARADMERLFDNKVHLELWVKVKAGWADDERAL 296 >gi|302754754|ref|XP_002960801.1| hypothetical protein SELMODRAFT_75698 [Selaginella moellendorffii] gi|300171740|gb|EFJ38340.1| hypothetical protein SELMODRAFT_75698 [Selaginella moellendorffii] Length = 330 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 165/299 (55%), Gaps = 8/299 (2%) Query: 7 TFFNEHKDFVQDNSR--SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 +F + FV D S+ SG VAL+G N GKSTL+N +G K+SIVT K QTTR + GI Sbjct: 12 SFLDFLLSFVADCSKFQSGYVALIGKPNVGKSTLLNGIIGQKLSIVTAKPQTTRHRILGI 71 Query: 65 VSEKESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 S Q++ DTPG+ + +LM++ S ++D + L+ D + + L Sbjct: 72 CSGPNYQMILYDTPGVITKQMHKLDELMMKSVRSATINSDCLLLIADICHPPE-QVLGTL 130 Query: 124 KEIAK---RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 E A +S +L+LNK D VK + ++ E K +++ VSA G G ++V Sbjct: 131 DEGAVNLIKSKPTLLVLNKKDKVKQSEIQKKQEWYEKNSGMDEVIPVSAKFGLGIEEVKQ 190 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK-D 239 +L S LPL P Y D +S+ F +EI REK+F +EIPY S V ++ E++ Sbjct: 191 WLVSKLPLGPAYYPRDIVSEHQERFFVSEIFREKIFQLYREEIPYCSQVNVVRYVEREAP 250 Query: 240 GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I I VE+ SQK I+LGK G+ +KT++ A+ +I + +++ +L + VKV++DW Sbjct: 251 AKDFIEIEILVEKESQKAILLGKEGKALKTLATAARLDIEDFVDRKCYLEIKVKVKEDW 309 >gi|323491197|ref|ZP_08096383.1| GTPase Era [Vibrio brasiliensis LMG 20546] gi|323314565|gb|EGA67643.1| GTPase Era [Vibrio brasiliensis LMG 20546] Length = 325 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 164/292 (56%), Gaps = 8/292 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G VA+VG N GKSTL+NR +G K+SI + K QTTR + G+ +E + Q +++DT Sbjct: 27 ENQHCGFVAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDT 86 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + +L ++ K + ++L Sbjct: 87 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDG-THWTSDDEMVLTKLQKSNFPVVLC 145 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V+ +L E++ K+ F++ +SA G D + ++ LP A + Sbjct: 146 VNKVDNVQDRNDVMLHMMEMSKKMEFVD-VVPISAKHGKNIDVLRKHVREHLPKATHHFP 204 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVER 252 + ++D +EI REKL +E+PYS V E+++ + DG I +I VER Sbjct: 205 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPETDG-FHINALILVER 263 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 264 HGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 315 >gi|303252176|ref|ZP_07338344.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247516|ref|ZP_07529561.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648959|gb|EFL79147.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856019|gb|EFM88177.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 304 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E + Q +++D Sbjct: 7 QPKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVD 66 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM R + S I D++ VV+ + + +L ++ + ++L Sbjct: 67 TPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDD-EMVLNKLRSAKAPVVL 125 Query: 136 ILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D +K E L E++ K F E +SA +G + + +L + Sbjct: 126 AINKVDNIKEKDELLPHITELSQKFDFAE-ILPISAKRGKNVHILQKIVRKSLREGVHHF 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 185 PEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNERGTYEINGLILVERE 244 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 245 GQKKMVIGAKGQKIKTIGMEARADMERLFDNKVHLELWVKVKAGWADDERAL 296 >gi|145635203|ref|ZP_01790907.1| GTP-binding protein Era [Haemophilus influenzae PittAA] gi|229845359|ref|ZP_04465490.1| GTP-binding protein Era [Haemophilus influenzae 6P18H1] gi|260582073|ref|ZP_05849868.1| GTP-binding protein Era [Haemophilus influenzae NT127] gi|145267482|gb|EDK07482.1| GTP-binding protein Era [Haemophilus influenzae PittAA] gi|229811667|gb|EEP47365.1| GTP-binding protein Era [Haemophilus influenzae 6P18H1] gi|260094963|gb|EEW78856.1| GTP-binding protein Era [Haemophilus influenzae NT127] Length = 302 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 158/291 (54%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 6 DKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDT 65 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S I D++ VVD + +L ++ + ++L Sbjct: 66 PGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLA 124 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D +K + L +++K F +SA +G+ ++ + +L + Sbjct: 125 INKVDNIKNKDDLLPFITGLSSKFNFAH-IVPISAQRGNNVHELEKIVRQSLREGVHHFP 183 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 184 EDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVEREG 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 QKKMVIGAGGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|258622344|ref|ZP_05717369.1| GTP-binding protein [Vibrio mimicus VM573] gi|262170591|ref|ZP_06038269.1| GTP-binding protein Era [Vibrio mimicus MB-451] gi|258585360|gb|EEW10084.1| GTP-binding protein [Vibrio mimicus VM573] gi|261891667|gb|EEY37653.1| GTP-binding protein Era [Vibrio mimicus MB-451] Length = 324 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 162/291 (55%), Gaps = 6/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ ++ Q +++DT Sbjct: 26 ENQHCGFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDT 85 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V VV+ + + ++ K + ++L Sbjct: 86 PGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLC 144 Query: 137 LNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D VK E +L E++ ++ F++ +SA +G D + ++ LP A + Sbjct: 145 VNKVDQVKDRNEVMLHMLELSKRMQFVD-IVPISAKQGKNTDVLKKHVRDHLPKAVHHFP 203 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ D I +I VER Sbjct: 204 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERI 263 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 264 GQKKMVIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 314 >gi|256821981|ref|YP_003145944.1| GTP-binding protein Era [Kangiella koreensis DSM 16069] gi|256795520|gb|ACV26176.1| GTP-binding protein Era [Kangiella koreensis DSM 16069] Length = 299 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 101/292 (34%), Positives = 164/292 (56%), Gaps = 5/292 (1%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + +N R G A++G N GKSTL+N +G KVSI + K QTTR + GI ++ ++QI+F+ Sbjct: 1 MHENFRCGYAAVLGRPNVGKSTLMNHILGQKVSITSRKPQTTRHRILGIYTDDDAQILFV 60 Query: 76 DTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPGI N S ++ M R + S++ D+V V+D + + +L+++ K + + I Sbjct: 61 DTPGIHKNEARSINRYMNRAASSSMVDVDVVIFVIDGT-QWTEDDELVLEKLQKTNCKTI 119 Query: 135 LILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L +NK+D + K + L A+I + F + F SA +G + ++ + LP Sbjct: 120 LFVNKVDKIQDKNQLLPHLAKITERFDF-DAVFPGSALRGDNLEPLVKQIKEWLPKGDLF 178 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 + D ++D AE+ REKL L +EIPYSS V E+++ + G + I +I VER Sbjct: 179 FPEDYVTDRSQRFMAAELIREKLMRSLGEEIPYSSTVEIEQFKTDEKGILHINGLILVER 238 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QK I++GK GQ +K I +A+ ++ E+ V L L+VKV+ W D + Sbjct: 239 AGQKAIIIGKQGQRLKQIGQDARIDMEELFGSKVFLQLWVKVKDGWADDERA 290 >gi|332670850|ref|YP_004453858.1| GTP-binding protein Era [Cellulomonas fimi ATCC 484] gi|332339888|gb|AEE46471.1| GTP-binding protein Era [Cellulomonas fimi ATCC 484] Length = 304 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 151/294 (51%), Gaps = 11/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG KV+I + + QTTR VRGIV ++Q+V +DTPG+ Sbjct: 4 RSGFACFVGRPNAGKSTLTNALVGQKVAITSGRPQTTRHTVRGIVHRPDAQLVLVDTPGL 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAK--RSSRLIL 135 + + + L T+ D+V + + + + I + L E+A+ R + ++ Sbjct: 64 HRPRTLLGERLNDLVKDTLTEVDVVGFCLPADQRVGPGDRFIAEQLSELARDGRGTPVVA 123 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++ K D V RL E L VSA G+ + + L LP P +Y Sbjct: 124 VVTKGDLVGKGRLAEHLLAVQNLGEWADIVPVSAVSGYQVKVLEDVLVGHLPEGPALYPE 183 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK----DGSIL--IRQVIY 249 +++D P AE+ RE + E+P+S VV E+ ++ DG+ + +R ++ Sbjct: 184 GELTDEPEAVMVAELVREAALEGVRDELPHSLAVVVEEIVPRETPTADGTPMLDVRVHLF 243 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VER SQK I++GK G ++ + +A++ I +L V L L VKV KDW DPK Sbjct: 244 VERDSQKAIVIGKGGARLRDVGSQARRGIEALLGARVFLDLHVKVAKDWQRDPK 297 >gi|310779271|ref|YP_003967604.1| GTP-binding protein Era [Ilyobacter polytropus DSM 2926] gi|309748594|gb|ADO83256.1| GTP-binding protein Era [Ilyobacter polytropus DSM 2926] Length = 298 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 152/275 (55%), Gaps = 4/275 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +A+VG N GKSTL N+ V KV+IV+ K TTR ++GI++ +Q +F+DTPGI Sbjct: 2 KSGFIAVVGRPNVGKSTLTNKLVNEKVAIVSDKAGTTRDSIKGILNHGGNQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILN 138 K + M ++ ++K +++ V+D +E+ ++ I A ++ R ILI+N Sbjct: 62 HKPKHLLGEHMTNVAVRSLKEVEVIMFVLDGSQEISTGDKYVMDRILEADKTPR-ILIVN 120 Query: 139 KIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID + E + +++AEI KL ++ +SA G V+ + L Y D Sbjct: 121 KIDKMSDEEIKVKKAEIEEKLGTFDRIVELSAEYSIGMYRVIEAIDPFLEEGVMYYPEDM 180 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 +D+P + EI REK+ EIP+S + E + +G IYVER SQK Sbjct: 181 YTDMPTYKVICEIVREKILTRTRDEIPHSIAIEIINVERRPNGKDKFDINIYVERNSQKG 240 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFV 292 I++G G+ +K + EA+K+I E+L + ++L L+V Sbjct: 241 IIIGNRGEMLKEVGTEARKDIEELLGKKIYLNLWV 275 >gi|256396152|ref|YP_003117716.1| GTP-binding protein Era [Catenulispora acidiphila DSM 44928] gi|256362378|gb|ACU75875.1| GTP-binding protein Era [Catenulispora acidiphila DSM 44928] Length = 375 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 160/306 (52%), Gaps = 19/306 (6%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D ++ R+G VG NAGKSTL N VGAKV+I + + QTTR VRGIV ++Q+ Sbjct: 67 RDEFPEDFRAGFACFVGRPNAGKSTLTNSVVGAKVAITSGRPQTTRHTVRGIVHRDDAQL 126 Query: 73 VFLDTPGIFNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK- 128 V +DTPG+ + + +R +W+ + D++ V + ++ + E+A+ Sbjct: 127 VLVDTPGLHKPRTLLGARLNDEVRATWNEV---DVIGFCVPADEKIGPGDRFIAAELAQV 183 Query: 129 RSSRLILILNKIDCVKPERLLEQ----AEIANKLVFIE--KTFMVSATKGHGCDDVLNYL 182 R + I IL K D E + EQ E+ + V IE + VSA + + + L Sbjct: 184 RRTPKIAILTKTDKAAKEFIAEQLLALMELGRE-VGIEWAEVIPVSAVRDEQIQLLEDLL 242 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK---- 238 LP +P +Y +++D P E+ RE + E+P+S V E+ ++ Sbjct: 243 VKQLPQSPPLYPGGELTDEPEEIMVGELVREAALEGVRDELPHSLAVTVEEMTLREGRPA 302 Query: 239 DGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKD 297 D +L + +YVERPSQK I++G G+ ++ + +A+++I +L PV L L VKV KD Sbjct: 303 DRPLLDVHATLYVERPSQKAIVIGHRGERLRDVGSQARRQIEALLGTPVFLDLHVKVAKD 362 Query: 298 WGHDPK 303 W DPK Sbjct: 363 WQRDPK 368 >gi|293391847|ref|ZP_06636181.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952381|gb|EFE02500.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans D7S-1] Length = 302 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 162/294 (55%), Gaps = 9/294 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q+ + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 5 QNQTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVD 64 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRL 133 TPG+ K + ++LM R + S I ++V VVD N D +L ++ K + + Sbjct: 65 TPGLHIEEKRAINRLMNRAASSAISDVELVIFVVDG---THWNDDDEMVLNKLRKTKAPV 121 Query: 134 ILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +L +NKID +K + L EI++K F + +SA KG+ + + + +L Sbjct: 122 VLAINKIDNIKNKDDLLPFITEISSKFNFAD-VVPISAEKGNNINVLEQIVRKSLRPGIH 180 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + D ++D +EI REKL + +E+PYS V E+++ + G+ I +I VE Sbjct: 181 HFPEDYVTDRSQRFMASEIIREKLMRFMGEELPYSVTVEIEQFKVNERGTYEINGLILVE 240 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G+ +K I EA+ ++ + + VHL L+VKV+ W D + Sbjct: 241 RDGQKKIVIGHKGEKLKKIGTEARLDMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|305681495|ref|ZP_07404302.1| GTP-binding protein Era [Corynebacterium matruchotii ATCC 14266] gi|305659700|gb|EFM49200.1| GTP-binding protein Era [Corynebacterium matruchotii ATCC 14266] Length = 305 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 158/289 (54%), Gaps = 7/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG + VG N GKSTL N VG K++I ++ +TTR +RGIV ++QI+ +DTPG+ Sbjct: 11 RSGFMCFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGIVHRDDAQIIVVDTPGL 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D++ + + + ++ I D ++++A ++ L+ I+ Sbjct: 71 HRPRTLLGERLNEVVKDTYADMDLIAITIPADEKIGPGDRWILDNVRKVAPKTP-LMGII 129 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V +++ Q +KL+ + + VSA G D +L+ + S LP P Y D Sbjct: 130 TKIDKVSRDQVALQLMALHKLLGEDSEVVPVSAVTGEQRDILLDVITSLLPEGPKFYPDD 189 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--GSILIRQVIYVERPS 254 ++D AE+ RE L E+P+S V ++ D G++ + +IYVERP Sbjct: 190 HVTDDDTNTRIAELVREAALSGLKDELPHSVAVEVDEIIPNPDRPGTLNVHVIIYVERPG 249 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++GKNG+ K I A+ +I ++L+ V+L L +KV K+W DPK Sbjct: 250 QKTILMGKNGRRFKGIIHAARPQICKLLDSNVYLDLRIKVLKNWQSDPK 298 >gi|323499982|ref|ZP_08104938.1| GTPase Era [Vibrio sinaloensis DSM 21326] gi|323314948|gb|EGA68003.1| GTPase Era [Vibrio sinaloensis DSM 21326] Length = 325 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 164/292 (56%), Gaps = 8/292 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G VA+VG N GKSTL+NR +G K+SI + K QTTR + G+ +E + Q +++DT Sbjct: 27 ENQHCGFVAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDT 86 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + +L ++ K + ++L Sbjct: 87 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDG-THWTNDDEMVLTKLQKSNFPVVLC 145 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V+ +L E++ K+ F++ +SA G D + ++ LP A + Sbjct: 146 VNKVDNVQDRNDVMLHMMEMSKKMDFVD-VVPISAKHGKNIDVLRKHVRDHLPKATHHFP 204 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVER 252 + ++D +EI REKL +E+PYS V E+++ + DG I +I VER Sbjct: 205 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPETDG-FHINALILVER 263 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 264 NGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 315 >gi|302534327|ref|ZP_07286669.1| GTP-binding protein Era [Streptomyces sp. C] gi|302443222|gb|EFL15038.1| GTP-binding protein Era [Streptomyces sp. C] Length = 316 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 158/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q+V +DTPG+ Sbjct: 16 RAGFACFVGRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPGL 75 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L + KE+A + + I I Sbjct: 76 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDKFIAKELAGIKKTPKIAI 132 Query: 137 LNKIDCVKPERLLEQAEIANKL---VFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V+ ++L EQ ++L + IE + VSA + + + LP +P Sbjct: 133 VTKTDLVESKQLAEQLLAIHQLGAELGIEWAEIVPVSAVGDTQVQLLADLIAPLLPESPP 192 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSIL-IRQ 246 +Y ++D P AE+ RE + E+P+S VV E + D +L I Sbjct: 193 LYPEGDLTDEPEMVMVAELIREAALEGVRDELPHSIAVVVEEMIPRENRPADRPLLDIHA 252 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G +K + ++++K I +L PV L L VKV KDW DPK Sbjct: 253 NVYIERPSQKGIIIGPKGSRLKEVGMKSRKHIEALLGTPVFLDLHVKVAKDWQRDPK 309 >gi|303251583|ref|ZP_07337757.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252104|ref|ZP_07534003.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649581|gb|EFL79763.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860404|gb|EFM92418.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 304 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E + Q +++D Sbjct: 7 QPKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVD 66 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM R + S I D++ VV+ + + +L ++ + ++L Sbjct: 67 TPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDD-EMVLNKLRSAKAPVVL 125 Query: 136 ILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D +K E L E++ K F E +SA +G + + +L + Sbjct: 126 AINKVDNIKEKDELLPHITELSPKFDFAE-ILPISAQRGKNVHILQKIVRKSLREGGHHF 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 185 PEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNERGTYEINGLILVERE 244 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 245 GQKKMVIGAKGQKIKTIGMEARADMERLFDSKVHLELWVKVKAGWADDERAL 296 >gi|300724127|ref|YP_003713444.1| GTPase [Xenorhabdus nematophila ATCC 19061] gi|297630661|emb|CBJ91326.1| GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division [Xenorhabdus nematophila ATCC 19061] Length = 301 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI ++ Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTKGAYQTIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRSSRLILI 136 K + ++LM R + S+I ++V VV+ E+ VN ++ ++L Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVVN------KLRNLRCPVLLA 122 Query: 137 LNKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V + +L ++ ++ FI+ +SA KG D + + +P A + Sbjct: 123 INKVDNVTDKTILLPHIGFLSQQMNFID-VVPISAEKGMNVDTIAKLVREHMPQADHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L E+PYS V E++ + G I +I VER Sbjct: 182 EDYITDRSQRFMASEIIREKLMRFLGDELPYSVTVEIEQFVSNERGGYTIHGLILVERDG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G IKTI EA++++ + + VHL L+VKV+ W D + Sbjct: 242 QKKMVIGNKGSKIKTIGTEARQDMERLFDAKVHLELWVKVKAGWADDERA 291 >gi|261868616|ref|YP_003256538.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413948|gb|ACX83319.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans D11S-1] Length = 302 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 162/294 (55%), Gaps = 9/294 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q+ + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++D Sbjct: 5 QNQTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVD 64 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRL 133 TPG+ K + ++LM R + S I ++V VVD N D +L ++ K + + Sbjct: 65 TPGLHIEEKRAINRLMNRAASSAISDVELVIFVVDG---THWNDDDEMVLNKLRKTKAPV 121 Query: 134 ILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +L +NKID +K + L EI++K F + +SA KG+ + + + +L Sbjct: 122 VLAINKIDNIKNKDDLLPFITEISSKFNFAD-VVPISAEKGNNINVLEQIVRKSLRPGIH 180 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + D ++D +EI REKL + +E+PYS V E+++ + G+ I +I VE Sbjct: 181 HFPEDYVTDRSQRFMASEIIREKLMRFMGEELPYSVTVEIEQFKVNERGTYEINGLILVE 240 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G+ +K I EA+ ++ + + VHL L+VKV+ W D + Sbjct: 241 RDGQKKIVIGHKGKKLKKIGTEARLDMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|328874089|gb|EGG22455.1| hypothetical protein DFA_04581 [Dictyostelium fasciculatum] Length = 444 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 102/318 (32%), Positives = 162/318 (50%), Gaps = 38/318 (11%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + S+ VA++GA NAGKS+LVN +G K+ V+ + TTR + GI++E ++Q+VF DT Sbjct: 121 EGSKRLNVAVIGAPNAGKSSLVNTIIGEKICAVSSREHTTRDNIIGILTEDKTQLVFHDT 180 Query: 78 PGIFNAKDSYHKL--MIRLSWSTIKHADIVCLVVDS--HRE------------------- 114 PGI + K+ + ++WS +K AD+V LVVD+ H+ Sbjct: 181 PGIIKHFEMKGKIREFVNMAWSVVKEADVVLLVVDAGAHQSEFSPTVGSASSALTTTDTS 240 Query: 115 -----LKVNIHDLLKEIA---------KRSSRLILILNKIDC-VKPERLLEQAEIANKLV 159 L+ + DLLKE+ R IL+LNK+D V+ E LL N+ Sbjct: 241 HIVTLLESQMLDLLKEMKMIQQQQDDIDRVKEFILVLNKVDLIVRKEDLLRLISRLNEGS 300 Query: 160 FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHL 219 TF++SAT D+ L + W + + +D +EI +EK++ + Sbjct: 301 IFSDTFIISATNNIHVGDLKGSLLARAVEGDWEFDDESKTDQTEIFRASEIIKEKVYERM 360 Query: 220 HKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIA 279 +EIPY+ W +G + I + V++ S K +LG G+ IK+I LEAKK++ Sbjct: 361 RQEIPYAVQQAMVGWTNFSNGDLRIDHDLIVQKDSHKSAILGAGGRTIKSIYLEAKKDLE 420 Query: 280 EILEQPVHLILFVKVQKD 297 ++ + VHL L VKV+K+ Sbjct: 421 KVFNRRVHLFLTVKVKKN 438 >gi|149192068|ref|ZP_01870293.1| GTP-binding protein Era [Vibrio shilonii AK1] gi|148834093|gb|EDL51105.1| GTP-binding protein Era [Vibrio shilonii AK1] Length = 329 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 160/291 (54%), Gaps = 6/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ ++ + Q +++DT Sbjct: 28 ENQHCGFVAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDT 87 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + +L ++ K +IL Sbjct: 88 PGLHIEEKRAINRLMNRAANSSLSDVNLVLFLVDG-THWTDDDEMVLNKLRKSDFPVILC 146 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D VK +L E++ K+ F++ +SA G D + ++ LP A + Sbjct: 147 MNKVDNVKDRNDVMLHMHELSKKMDFVD-VVPISAKHGKNTDVLRKHVREHLPEAVHHFP 205 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERP 253 + ++D +EI REKL E+PYS V E+++ D I +I VER Sbjct: 206 EEYVTDRSQRFMASEILREKLMRFTGDELPYSVTVEIERFDYNPDTDGFHINALILVERN 265 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ ++ V+L +VKV+ W D + Sbjct: 266 GQKKMVIGKGGEKIKTIGREARLDMEELFDRKVYLETWVKVKSGWADDERA 316 >gi|297571540|ref|YP_003697314.1| GTP-binding protein Era [Arcanobacterium haemolyticum DSM 20595] gi|296931887|gb|ADH92695.1| GTP-binding protein Era [Arcanobacterium haemolyticum DSM 20595] Length = 310 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 101/298 (33%), Positives = 155/298 (52%), Gaps = 17/298 (5%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 ++ R+G +++VG NAGKSTL N VG K+ I ++ +TTR IVRGIV Q++ +DT Sbjct: 11 EDYRAGFISIVGRPNAGKSTLTNALVGTKIVITANQPETTRRIVRGIVQRDHGQLILVDT 70 Query: 78 PGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSR 132 PG+ + + M+R S + A ++CL D K+ D LL+E+A+ Sbjct: 71 PGLHRPRTLLGERLNDMVRDSLDGVDAA-LMCLPADE----KIGPGDRYLLRELAEARVP 125 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + + KID + E L + ++L + +SA G + L +PL+P + Sbjct: 126 IFAAVTKIDKISREDLAAKLIDVSQLHDFVEIIPLSAKSGEQVALAADVLLKHMPLSPPL 185 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGS-----ILIR 245 Y D ++D AE RE + E+P+S VV E+ E K G+ I I Sbjct: 186 YPMDAVTDESDEAMIAEFVREAALEDVRDELPHSIAVVVEEMIEREAKPGAQRPPLIDIH 245 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I+VERPSQK I++G GQ ++ + +A+ I +L + V+L L VKV KDW DPK Sbjct: 246 VHIFVERPSQKGIIIGHGGQRLRKVGQQARANIERLLGRKVYLDLHVKVAKDWQRDPK 303 >gi|253988787|ref|YP_003040143.1| GTP-binding protein Era [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780237|emb|CAQ83398.1| gtp-binding protein era [Photorhabdus asymbiotica] Length = 302 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 156/285 (54%), Gaps = 5/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGTYQTIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S+I ++V VV+ + +L ++ ++L +NK+D Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVLNKLRNLRCPVLLAINKVD 127 Query: 142 CVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 V + +L ++ ++ F++ M SA KG D + + +P A + D I+ Sbjct: 128 NVIDKAILLPHIGFLSKQMNFLDVVPM-SAEKGMNVDTIAKIVRGHMPQATHHFPEDYIT 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL L E+PYS V E++ + G I +I VER QKK++ Sbjct: 187 DRSQRFMASEIIREKLMRFLGDELPYSVTVEIEQFVANERGGYNIHGLILVERDGQKKMV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +G G IKTI +EA++++ + + VHL L+VKV+ W D + Sbjct: 247 IGNKGSKIKTIGIEARQDMERLFDVKVHLELWVKVKAGWADDERA 291 >gi|153214498|ref|ZP_01949407.1| GTP-binding protein Era [Vibrio cholerae 1587] gi|153803091|ref|ZP_01957677.1| GTP-binding protein Era [Vibrio cholerae MZO-3] gi|153826892|ref|ZP_01979559.1| GTP-binding protein Era [Vibrio cholerae MZO-2] gi|153830876|ref|ZP_01983543.1| GTP-binding protein Era [Vibrio cholerae 623-39] gi|229524447|ref|ZP_04413852.1| GTP-binding protein Era [Vibrio cholerae bv. albensis VL426] gi|229527068|ref|ZP_04416463.1| GTP-binding protein Era [Vibrio cholerae 12129(1)] gi|254226245|ref|ZP_04919838.1| GTP-binding protein Era [Vibrio cholerae V51] gi|254291660|ref|ZP_04962448.1| GTP-binding protein Era [Vibrio cholerae AM-19226] gi|262190710|ref|ZP_06048941.1| GTP-binding protein Era [Vibrio cholerae CT 5369-93] gi|297581084|ref|ZP_06943009.1| GTP-binding protein Era [Vibrio cholerae RC385] gi|124115300|gb|EAY34120.1| GTP-binding protein Era [Vibrio cholerae 1587] gi|124121373|gb|EAY40116.1| GTP-binding protein Era [Vibrio cholerae MZO-3] gi|125621218|gb|EAZ49559.1| GTP-binding protein Era [Vibrio cholerae V51] gi|148873645|gb|EDL71780.1| GTP-binding protein Era [Vibrio cholerae 623-39] gi|149739255|gb|EDM53517.1| GTP-binding protein Era [Vibrio cholerae MZO-2] gi|150422432|gb|EDN14391.1| GTP-binding protein Era [Vibrio cholerae AM-19226] gi|229335465|gb|EEO00947.1| GTP-binding protein Era [Vibrio cholerae 12129(1)] gi|229338028|gb|EEO03045.1| GTP-binding protein Era [Vibrio cholerae bv. albensis VL426] gi|262033422|gb|EEY51929.1| GTP-binding protein Era [Vibrio cholerae CT 5369-93] gi|297534910|gb|EFH73746.1| GTP-binding protein Era [Vibrio cholerae RC385] Length = 324 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 161/286 (56%), Gaps = 6/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ +E + Q +++DTPG+ Sbjct: 31 GFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYVDTPGLHI 90 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V VV+ + + ++ K + ++L +NK+D Sbjct: 91 EEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD 149 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK E +L E++ ++ F++ +SA +G D + ++ LP A + + ++ Sbjct: 150 QVKDRNEVMLHMLELSKRMPFVD-IVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYVT 208 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKI 258 D +EI REKL +E+PYS V E+++ D I +I VER QKK+ Sbjct: 209 DRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERIGQKKM 268 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 269 VIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 314 >gi|312881717|ref|ZP_07741494.1| GTP-binding protein Era [Vibrio caribbenthicus ATCC BAA-2122] gi|309370607|gb|EFP98082.1| GTP-binding protein Era [Vibrio caribbenthicus ATCC BAA-2122] Length = 325 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 164/292 (56%), Gaps = 8/292 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R G +A+VG N GKSTL+NR +G K+SI + K QTTR + G+ ++ + Q +++DT Sbjct: 27 ENQRCGFIAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTQGDFQAIYVDT 86 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + +L ++ K + ++L Sbjct: 87 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDG-THWTDDDEMVLTKLQKSNFPVVLC 145 Query: 137 LNKIDCVKPER---LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D V P+R ++ +++ K+ F++ +SA G D + ++ LP A + Sbjct: 146 VNKVDNV-PDRNQVMMHMMDMSKKMEFVD-VVPISAKHGKNIDVLREHVRKHLPKATHHF 203 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVER 252 + ++D +EI REKL +E+PYS V E+++ D I +I VER Sbjct: 204 PEEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVER 263 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V L +VKV+ W D + Sbjct: 264 HGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVFLETWVKVKSGWADDERA 315 >gi|226307218|ref|YP_002767178.1| GTP-binding protein Era [Rhodococcus erythropolis PR4] gi|226186335|dbj|BAH34439.1| probable GTP-binding protein Era [Rhodococcus erythropolis PR4] Length = 305 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 158/292 (54%), Gaps = 9/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG+K++I + + QTTR +RGIV + +Q++ +DTPG+ Sbjct: 7 RSGFVCFVGRPNTGKSTLTNALVGSKIAITSSRPQTTRHTIRGIVHREHAQLILVDTPGL 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRLILILN 138 + + + L T D++CL + + + ++++I + + ++L+ I+ Sbjct: 67 HKPRTLLGQRLNDLVRDTYSEVDVICLCIPADEAIGPGDRWIVQQIRQMAPKTKLVGIVT 126 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V + + +Q + ++ E + VSA G + +++ L + P Y + Sbjct: 127 KIDKVSRDAVGKQLLALSTVLGPESEVVPVSAKSGEQVEILVDVLAGLMDEGPAFYPDGE 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE-----KWEEKKDGSIL-IRQVIYVE 251 ++D P AE+ RE L +E+P+S VV E + +K G +L + ++YVE Sbjct: 187 LTDEPEEVLMAELIREAALEGLGEELPHSLAVVIEEVIPREGRTEKQGEMLDVHALLYVE 246 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 RPSQK I++GK G ++ + A+ +I ++L + L L VKV KDW DPK Sbjct: 247 RPSQKGIVIGKGGARLREVGTSARLQIEKLLGVRIFLELHVKVAKDWQRDPK 298 >gi|225551797|ref|ZP_03772740.1| GTP-binding protein Era [Borrelia sp. SV1] gi|225371592|gb|EEH01019.1| GTP-binding protein Era [Borrelia sp. SV1] Length = 290 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 160/288 (55%), Gaps = 3/288 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M++ S+I +++ ++D + + +L+ I + ++ILNKI Sbjct: 62 HLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKI 121 Query: 141 DCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K ++ E + + K + +SA K +++ N + P Y + + Sbjct: 122 D-LKNTKIKEITQFLKEKGIEDNNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYYT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D + +EI REK +L +E+PYS V + E KK GS+ IR I+V SQK I+ Sbjct: 181 DQEINFRISEIIREKAIENLKEELPYSLYVDIDNLENKK-GSLFIRANIFVANESQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GKNG+ IK+I A+K IA+I E +L L VK++K+W + K + Sbjct: 240 VGKNGKEIKSIGERARKTIAKIFETKCNLFLQVKLKKNWNKEDKLIKR 287 >gi|311895955|dbj|BAJ28363.1| putative GTP-binding protein Era homolog [Kitasatospora setae KM-6054] Length = 309 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 152/294 (51%), Gaps = 11/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG KV+I + + QTTR VRGIV +SQ+V +DTPG+ Sbjct: 9 RSGFACFVGRPNAGKSTLTNALVGTKVAITSDRPQTTRHTVRGIVHRPDSQLVLVDTPGL 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILILNK 139 + + + L +T D++ V + ++L + KE+A+ R + + I+ K Sbjct: 69 HKPRTLLGERLNDLVRTTWAEVDVIGFCVPADQKLGPGDKFIAKELAEIRKTPKVAIVTK 128 Query: 140 IDCVKPERLLEQAEIANKL---VFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V +RL EQ ++L + IE + VSA V L LP +Y Sbjct: 129 TDLVDSKRLAEQLIAVHQLGAELGIEWAEIIPVSAVGDQQVQLVAELLAKLLPEGVPLYP 188 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK----DGSIL-IRQVIY 249 ++D P AE+ RE + E+P+S VV E+ ++ D +L I +Y Sbjct: 189 DGDLTDEPEQTMVAELIREAALEGVRDELPHSLAVVVEEMIPREGRPADRPLLDIHANVY 248 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +ER SQK I++G G +K + A+K+I +L PV+L L VKV KDW DPK Sbjct: 249 IERQSQKAIVIGAKGARLKHVGTTARKQIEALLGTPVYLDLHVKVAKDWQRDPK 302 >gi|229521287|ref|ZP_04410707.1| GTP-binding protein Era [Vibrio cholerae TM 11079-80] gi|229341819|gb|EEO06821.1| GTP-binding protein Era [Vibrio cholerae TM 11079-80] Length = 324 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 161/286 (56%), Gaps = 6/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ +E + Q +++DTPG+ Sbjct: 31 GFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYVDTPGLHI 90 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V VV+ + + ++ K + ++L +NK+D Sbjct: 91 EEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD 149 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK E +L E++ ++ F++ +SA +G D + ++ LP A + + ++ Sbjct: 150 QVKDRNEVMLHMLELSKRMPFVD-IVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYVT 208 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKI 258 D +EI REKL +E+PYS V E+++ D I +I VER QKK+ Sbjct: 209 DRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERIGQKKM 268 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 269 VIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 314 >gi|153871986|ref|ZP_02001009.1| GTPase [Beggiatoa sp. PS] gi|152071549|gb|EDN68992.1| GTPase [Beggiatoa sp. PS] Length = 300 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 165/292 (56%), Gaps = 5/292 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA++G N GKSTL+N +G K+ I + K QTTR + GI + +QI+++DTPGI Sbjct: 9 GYVAIIGRPNVGKSTLLNYLLGKKLCITSRKPQTTRHRLLGIKTLGNTQIIYVDTPGIHQ 68 Query: 83 AK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + ++ ++ + R + ++ D++ +V++ + + + +LK +A+ ++ +IL +NKID Sbjct: 69 RQHNAMNRYLNRAAQGSMVGVDMIIWLVEALCWTEEDSY-VLKSLAQLTAPVILGVNKID 127 Query: 142 CVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 + ++ L ++ K FI F +SA KG D + + LP+ ++ DQI+ Sbjct: 128 KINDKKALLPYLQDVTLKHDFIS-VFPISAHKGDNLDKLEAKVIDLLPINALLFPEDQIT 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AEI REKL L E+PY V E++E + + I I +I+VER QK I+ Sbjct: 187 DRTERFLCAEIVREKLIRRLGAELPYRMTVQIEQFETRNNNLIFISAIIWVERKGQKIIV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQREIF 311 +GK G +K I EA+++I ++L V L L+VKV++ W + + Q F Sbjct: 247 IGKKGNMLKNIGQEARQDIEQMLGSKVFLQLWVKVKEGWCDNDRALQQLGYF 298 >gi|327484952|gb|AEA79359.1| GTP-binding protein Era [Vibrio cholerae LMA3894-4] Length = 325 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 161/286 (56%), Gaps = 6/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ +E + Q +++DTPG+ Sbjct: 32 GFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYVDTPGLHI 91 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V VV+ + + ++ K + ++L +NK+D Sbjct: 92 EEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD 150 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK E +L E++ ++ F++ +SA +G D + ++ LP A + + ++ Sbjct: 151 QVKDRNEVMLHMLELSKRMPFVD-IVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYVT 209 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKI 258 D +EI REKL +E+PYS V E+++ D I +I VER QKK+ Sbjct: 210 DRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERIGQKKM 269 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 270 VIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 315 >gi|150015731|ref|YP_001307985.1| GTP-binding protein Era [Clostridium beijerinckii NCIMB 8052] gi|189037260|sp|A6LRP9|ERA_CLOB8 RecName: Full=GTPase Era gi|149902196|gb|ABR33029.1| GTP-binding protein Era [Clostridium beijerinckii NCIMB 8052] Length = 298 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 152/278 (54%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N +G K+SIV++K QTTR+ ++ I++ + Q++F+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ + + K D+V + + E+ +L+ + + + L+LNK+ Sbjct: 63 HKPKHKLGEYMVNSAKESTKDVDLVLFLTNPDEEIGKGDKFILETLRDKKCPVFLVLNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D +R+ + E+ +K + +SA KG D ++ + +P P Y D I+D Sbjct: 123 DESTQDRVAKSLEMYSKEFKFAEIVPISAIKGKNVDVLVELMKKAMPEGPKYYPDDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + +EI REK L E+P+ V + ++ + G+ I + E+ S K I++ Sbjct: 183 VQEKFVVSEIIREKALRTLRDEVPHGIAVDIIQMKQNEIGTYHIEVDLICEKDSHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GKNGQ +K I ++ E+ L V+L ++VKV+K+W Sbjct: 243 GKNGQTLKRIGENSRYELERFLRSKVNLKIWVKVRKEW 280 >gi|15642456|ref|NP_232089.1| GTP-binding protein Era [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590984|ref|ZP_01678303.1| GTP-binding protein Era [Vibrio cholerae 2740-80] gi|153820071|ref|ZP_01972738.1| GTP-binding protein Era [Vibrio cholerae NCTC 8457] gi|227082581|ref|YP_002811132.1| GTP-binding protein Era [Vibrio cholerae M66-2] gi|229507480|ref|ZP_04396985.1| GTP-binding protein Era [Vibrio cholerae BX 330286] gi|229512325|ref|ZP_04401804.1| GTP-binding protein Era [Vibrio cholerae B33] gi|229519461|ref|ZP_04408904.1| GTP-binding protein Era [Vibrio cholerae RC9] gi|229606985|ref|YP_002877633.1| GTP-binding protein Era [Vibrio cholerae MJ-1236] gi|254849585|ref|ZP_05238935.1| GTP-binding protein Era [Vibrio cholerae MO10] gi|255746869|ref|ZP_05420814.1| GTP-binding protein Era [Vibrio cholera CIRS 101] gi|262162034|ref|ZP_06031050.1| GTP-binding protein Era [Vibrio cholerae INDRE 91/1] gi|262404773|ref|ZP_06081328.1| GTP-binding protein Era [Vibrio sp. RC586] gi|298500183|ref|ZP_07009988.1| GTP-binding protein Era [Vibrio cholerae MAK 757] gi|31340514|sp|Q9KPB3|ERA_VIBCH RecName: Full=GTPase Era gi|9657038|gb|AAF95602.1| GTP-binding protein Era [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547161|gb|EAX57290.1| GTP-binding protein Era [Vibrio cholerae 2740-80] gi|126509383|gb|EAZ71977.1| GTP-binding protein Era [Vibrio cholerae NCTC 8457] gi|227010469|gb|ACP06681.1| GTP-binding protein Era [Vibrio cholerae M66-2] gi|229344150|gb|EEO09125.1| GTP-binding protein Era [Vibrio cholerae RC9] gi|229352290|gb|EEO17231.1| GTP-binding protein Era [Vibrio cholerae B33] gi|229354985|gb|EEO19906.1| GTP-binding protein Era [Vibrio cholerae BX 330286] gi|229369640|gb|ACQ60063.1| GTP-binding protein Era [Vibrio cholerae MJ-1236] gi|254845290|gb|EET23704.1| GTP-binding protein Era [Vibrio cholerae MO10] gi|255735271|gb|EET90671.1| GTP-binding protein Era [Vibrio cholera CIRS 101] gi|262028283|gb|EEY46940.1| GTP-binding protein Era [Vibrio cholerae INDRE 91/1] gi|262349805|gb|EEY98943.1| GTP-binding protein Era [Vibrio sp. RC586] gi|297540876|gb|EFH76930.1| GTP-binding protein Era [Vibrio cholerae MAK 757] Length = 325 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 162/291 (55%), Gaps = 6/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ ++ Q +++DT Sbjct: 27 ENQHCGFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDT 86 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V VV+ + + ++ K + ++L Sbjct: 87 PGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFTKLQKANFPVVLC 145 Query: 137 LNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D VK E +L E++ ++ F++ +SA +G D + ++ LP A + Sbjct: 146 VNKVDQVKDRNEVMLHMLELSKRMQFVD-IVPISAKQGKNTDVLKKHVRDHLPKAVHHFP 204 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ D I +I VER Sbjct: 205 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERI 264 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 265 GQKKMVIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 315 >gi|116670776|ref|YP_831709.1| GTP-binding protein Era [Arthrobacter sp. FB24] gi|116610885|gb|ABK03609.1| GTP-binding protein Era [Arthrobacter sp. FB24] Length = 318 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 101/307 (32%), Positives = 155/307 (50%), Gaps = 13/307 (4%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N+ D R+G LVG NAGKSTL N VG KV+I + K QTTR +RGIV + Sbjct: 5 NKADDDAFGGFRAGFSILVGRPNAGKSTLTNALVGKKVAITSAKPQTTRHTIRGIVHRDD 64 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 +Q++ +DTPG+ + K + L T+ D + + ++ ++ + ++A Sbjct: 65 AQLILVDTPGLHRPRTLLGKRLNDLVADTLSEVDAIGFCLPANEKIGPGDRFIAAQLAAV 124 Query: 130 SSR-LILILNKIDCVKPERLLEQ----AEIANKLVFIE---KTFMVSATKGHGCDDVLNY 181 + +I I+ K D V + L EQ A + +++ E VSAT G V + Sbjct: 125 GKKPIIAIVTKADLVDRQALTEQLLAVAALGREVLGEEGWKDIVPVSATDGFQVGTVADV 184 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEK 237 L S +P + +Y ++D P AE+ RE + E+P+S VV E + Sbjct: 185 LISHMPPSQPLYPDGHLTDEPEAVMVAELIREAALEGVRDELPHSLAVVVEEIVPREGRP 244 Query: 238 KDGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 +D L +R +YVERPSQK I++GK G ++ + A+K I +L ++L L VKV K Sbjct: 245 EDSPFLDVRVNLYVERPSQKAIIIGKGGARLREVGTTARKGIEALLGTRIYLDLHVKVAK 304 Query: 297 DWGHDPK 303 DW DPK Sbjct: 305 DWQRDPK 311 >gi|240949697|ref|ZP_04754032.1| GTP-binding protein Era [Actinobacillus minor NM305] gi|257464705|ref|ZP_05629076.1| GTP-binding protein Era [Actinobacillus minor 202] gi|240295955|gb|EER46631.1| GTP-binding protein Era [Actinobacillus minor NM305] gi|257450365|gb|EEV24408.1| GTP-binding protein Era [Actinobacillus minor 202] Length = 300 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 156/286 (54%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S I D++ VV+ + + + +L ++ + ++L +NK+D Sbjct: 69 EEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTEDD-EMVLNKLRAAKAPVVLAINKVD 127 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +K E L E++ K F E +SA +G + ++ +L + + ++ Sbjct: 128 NIKEKDELLPHITELSQKFDFAE-ILPISAQRGKNVHILQKFVRDSLREGVHHFPEEYVT 186 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL E+PYS V E+++ + G I +I VER QKK++ Sbjct: 187 DRSQRFMASEIIREKLMRFTGDELPYSVTVEIEQFKMNERGVYEINGLILVEREGQKKMV 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 247 IGAKGQKIKTIGMEARADMERLFDNKVHLELWVKVKAGWADDERAL 292 >gi|315604800|ref|ZP_07879859.1| GTP-binding protein Era [Actinomyces sp. oral taxon 180 str. F0310] gi|315313471|gb|EFU61529.1| GTP-binding protein Era [Actinomyces sp. oral taxon 180 str. F0310] Length = 402 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 153/300 (51%), Gaps = 8/300 (2%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E DF +D R+G V++VG N GKSTL N VGAK++I + + +TTR +RGIV Sbjct: 97 EVPDFPED-FRAGFVSIVGRPNVGKSTLTNALVGAKIAITSGRPETTRHNIRGIVHGDNY 155 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 Q+V +DTPG + K + + + D+V + + + + + +E+ Sbjct: 156 QLVLVDTPGYHRPRTLLGKRLNDMVREALSEVDVVLFCLPADQRIGPGDQFIARELRSVK 215 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +I + K D V ER+++ KL VS+ +G G D + + L T+PL+P Sbjct: 216 RPIIAVATKCDAVARERVMKHLLAIEKLGEWAAIVPVSSVEGKGIDHLRDVLAQTVPLSP 275 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--KKDGS-----IL 243 +Y ++D AE RE + E+P+S V E+ E +++G + Sbjct: 276 PLYPDGDVTDESRDTLIAEFIREAALEGVRDELPHSLAVQVEEIIERPRREGDERPPMLD 335 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I +YVER SQK I++G+ G +K I +A+ I E+L + V+L L V+ KDW DPK Sbjct: 336 IHVNVYVERDSQKAIIIGRKGSRLKQIGTQARAHIEELLGRRVYLDLHVRTAKDWQSDPK 395 >gi|229514086|ref|ZP_04403548.1| GTP-binding protein Era [Vibrio cholerae TMA 21] gi|229349267|gb|EEO14224.1| GTP-binding protein Era [Vibrio cholerae TMA 21] Length = 324 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 161/286 (56%), Gaps = 6/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ +E + Q +++DTPG+ Sbjct: 31 GFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYVDTPGLHI 90 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V VV+ + + ++ K + ++L +NK+D Sbjct: 91 EEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD 149 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK E +L E++ ++ F++ +SA +G D + ++ LP A + + ++ Sbjct: 150 QVKDRNEVMLHMLELSKRMPFVD-IVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYVT 208 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKI 258 D +EI REKL +E+PYS V E+++ D I +I VER QKK+ Sbjct: 209 DRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERIGQKKM 268 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 269 VIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 314 >gi|260913783|ref|ZP_05920259.1| GTP-binding protein Era [Pasteurella dagmatis ATCC 43325] gi|260632322|gb|EEX50497.1| GTP-binding protein Era [Pasteurella dagmatis ATCC 43325] Length = 306 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/295 (32%), Positives = 161/295 (54%), Gaps = 11/295 (3%) Query: 18 DNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 DN+++ C +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++ Sbjct: 8 DNTKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV 67 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSR 132 DTPG+ K + ++LM R + S I D++ VVD N D +L ++ + Sbjct: 68 DTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG---THWNEDDEMVLNKLRAAKTP 124 Query: 133 LILILNKIDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++L +NKID +K E L E+++K F +SA G +++ + ++L Sbjct: 125 VVLAINKIDNIKNKEEMLPFITELSSKFGFAH-VVPISAQSGKNVNELEKIVRNSLREGI 183 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + + ++D +EI REKL E+PYS V E+++ + G+ I +I V Sbjct: 184 HHFPEEYVTDRSQRFMASEIIREKLMRFTGDELPYSVTVEIEQFKLNERGTYEINGLILV 243 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G GQ IK I +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 EREGQKKMVIGNKGQKIKQIGIEARSDMERLFDNKVHLELWVKVKSGWADDERAL 298 >gi|271963831|ref|YP_003338027.1| GTP-binding protein Era [Streptosporangium roseum DSM 43021] gi|270507006|gb|ACZ85284.1| GTP-binding protein Era [Streptosporangium roseum DSM 43021] Length = 306 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 149/285 (52%), Gaps = 3/285 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G VG N GKSTL+N VG KV+I + K QTTR ++RGIV ++Q++ +DTPG+ Sbjct: 13 AGFACFVGRPNVGKSTLMNALVGTKVAITSSKPQTTRRVIRGIVHRPDAQLIIVDTPGLH 72 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILILNKI 140 + + + L ST+ D++ V ++ + + +++A R + ++ ++ K Sbjct: 73 RPRTLLGERLDSLVLSTLTEVDVIGFCVPANEPIGKGDRFIAEKLAAIRKTPVVAVVTKC 132 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ Q ++L + VSA G D + L LP +P +Y +++D Sbjct: 133 DLATREQIAAQLLALSQLAEFAEIVPVSAQSGEQLDVLAGVLIDRLPASPPLYEGGRLTD 192 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQKKI 258 P E+ RE + E+P+S VV ++ + +D + I ++VERPSQK I Sbjct: 193 EPEQVLVGELIREAALEGVRDELPHSIAVVVDEMLPRQGRDDLLDIYAHMFVERPSQKAI 252 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ++G G +K + A+++I +L V+L L + V KDW DPK Sbjct: 253 VIGHKGSRLKDVGSRARQQIEALLGTRVYLDLRISVAKDWQRDPK 297 >gi|209695942|ref|YP_002263872.1| GTP-binding protein Era [Aliivibrio salmonicida LFI1238] gi|208009895|emb|CAQ80208.1| GTP-binding protein era [Aliivibrio salmonicida LFI1238] Length = 321 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 165/303 (54%), Gaps = 8/303 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F +E K DN G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ +E Sbjct: 13 FSSEAKTESSDNQHCGFIAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIMGVDTE 72 Query: 68 KESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + Q +++DTPG+ K + ++LM R + S++ ++V +VD + +L ++ Sbjct: 73 GDYQAIYIDTPGLHIEEKRAINRLMNRAASSSLSDVNLVLFLVDG-THWTPDDEMVLNKL 131 Query: 127 AKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 K +L++NK+D VK + + + K+ F++ +SA G D V + Sbjct: 132 RKAGFPTVLLVNKVDNVKDKNDVMAHLQTMTEKMDFVD-VVPISAKSGSNVDVVQKLVRD 190 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSI 242 LP A + + ++D +EI REKL +E+PYS V E+++ K DG Sbjct: 191 HLPKAVHHFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIERFDYNPKMDG-F 249 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I +I VER QKK+++GKNG+ IK I EA+ ++ + ++ V+L L+VKV+ W D Sbjct: 250 HINGLILVERLGQKKMVVGKNGEKIKVIGREARLDMEGLFDRKVYLELWVKVKSGWADDE 309 Query: 303 KCC 305 + Sbjct: 310 RAL 312 >gi|300113379|ref|YP_003759954.1| GTP-binding protein Era [Nitrosococcus watsonii C-113] gi|299539316|gb|ADJ27633.1| GTP-binding protein Era [Nitrosococcus watsonii C-113] Length = 307 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/298 (31%), Positives = 163/298 (54%), Gaps = 10/298 (3%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 ++ Q++ R G +A++G N GKS+L+NR + K+SI + + QTTR + GI + Q Sbjct: 7 QEGTQESIRCGYIAIIGRPNVGKSSLLNRILDQKISITSRRPQTTRHRILGIKTLPGIQA 66 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSW----STIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +++DTPG +D +LM R ST++ D++ V+++ + + +L+ + + Sbjct: 67 IYVDTPGF---QDKERRLMNRYLNRAIDSTLEEVDLILFVIEAF-QFSKDDEWILQRLRR 122 Query: 129 RSSRLILILNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++ ++L+LNK+D + + LL +K + VSA KG + + + LP Sbjct: 123 CAAPIVLVLNKVDRIIDKKSLLPVIATLSKKIEFAAIIPVSAWKGDNVAVLESKVAELLP 182 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 P Y DQ++D AE+ REKL +L +E+PY+ V E EE+K+ I Sbjct: 183 AGPMAYPEDQVTDRSERFLAAELIREKLTRYLGQELPYALTVFVESLEEEKN-LYRIAAT 241 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IYVERP QK I++GK G+ +K + EA+ ++ + V+L L+VKV++ W + + Sbjct: 242 IYVERPGQKAIVVGKKGKGLKRVGYEARLDMERMFGSKVYLELWVKVREGWSDNERLL 299 >gi|145639698|ref|ZP_01795301.1| GTP-binding protein Era [Haemophilus influenzae PittII] gi|145271255|gb|EDK11169.1| GTP-binding protein Era [Haemophilus influenzae PittII] gi|309750668|gb|ADO80652.1| GTP-binding protein [Haemophilus influenzae R2866] Length = 302 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 157/291 (53%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 6 DKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDT 65 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S I D++ VVD + L ++ + ++L Sbjct: 66 PGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMALNKLRNAKAPVVLA 124 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D +K + L +++K F +SA +G+ ++ + +L + Sbjct: 125 INKVDNIKNKDDLLPFITGLSSKFNFAH-IVPISAQRGNNVHELEKIVRQSLREGVHHFP 183 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 184 EDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVEREG 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 QKKMVIGAGGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|261211554|ref|ZP_05925842.1| GTP-binding protein Era [Vibrio sp. RC341] gi|260839509|gb|EEX66135.1| GTP-binding protein Era [Vibrio sp. RC341] Length = 324 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 161/286 (56%), Gaps = 6/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ +E + Q +++DTPG+ Sbjct: 31 GFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYVDTPGLHI 90 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V VV+ + + ++ K + ++L +NK+D Sbjct: 91 EEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFTKLQKANFPVVLCVNKVD 149 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK E +L E++ ++ F++ +SA +G D + ++ LP A + + ++ Sbjct: 150 QVKDRNEVMLHMLELSKRMPFVD-IVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYVT 208 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKI 258 D +EI REKL +E+PYS V E+++ D I +I VER QKK+ Sbjct: 209 DRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERIGQKKM 268 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 269 VIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 314 >gi|83319405|ref|YP_424480.1| GTP-binding protein Era [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283291|gb|ABC01223.1| GTP-binding protein Era [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 301 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 160/290 (55%), Gaps = 4/290 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDTPG 79 +SG V+++G N GKSTL+N+ +G K+SIVT+K QTTR+ +RGI+++K+ QIVF+DTPG Sbjct: 5 KSGFVSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDKYQIVFIDTPG 64 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K K + + + K D++ + S + N LLK+I IL++ K Sbjct: 65 VHTTKKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKILVITK 124 Query: 140 IDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSADQ 197 D V E+L+ +A E + ++ + S+ + +L + + L + Y D Sbjct: 125 ADNVTKEQLILKAKEWSAYQDQFDEIIITSSLTNLNIEKLLELIVNNLSDNDYQFYDDDI 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D EI RE + L +E+P+S V+ E E+ + + I I VER SQK Sbjct: 185 LTDQSDRFMIKEIIRENILLKTGQEVPHSVAVLVEHLEQ-NETEMNISAAIIVERQSQKS 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 I++GK G I I ++KK+I + ++ ++L LFVKVQ++W + P + Sbjct: 244 IIIGKKGVKISDIRYKSKKQIQTLFKKHINLELFVKVQENWRNSPSLIKK 293 >gi|302804232|ref|XP_002983868.1| hypothetical protein SELMODRAFT_119375 [Selaginella moellendorffii] gi|300148220|gb|EFJ14880.1| hypothetical protein SELMODRAFT_119375 [Selaginella moellendorffii] Length = 330 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/299 (35%), Positives = 165/299 (55%), Gaps = 8/299 (2%) Query: 7 TFFNEHKDFVQDNSR--SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 +F + FV D S+ +G VAL+G N GKSTL+N +G K+SIVT K QTTR + GI Sbjct: 12 SFLDFLLSFVADCSKFQAGYVALIGKPNVGKSTLLNGIIGQKLSIVTAKPQTTRHRILGI 71 Query: 65 VSEKESQIVFLDTPGIFNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 S Q++ DTPG+ + +LM++ S ++D + L+ D + + L Sbjct: 72 CSGPNYQMILYDTPGVITKQMHKLDELMMKSVRSATINSDCLLLIADICHPPE-QVLGTL 130 Query: 124 KEIAK---RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 E A +S +L+LNK D VK + ++ E K +++ VSA G G ++V Sbjct: 131 DEGAVNLIKSKPTLLVLNKKDKVKQSEIQKKQEWYEKNSGMDEVIPVSAKFGLGIEEVKQ 190 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK-D 239 +L S LPL P Y D +S+ F +EI REK+F +EIPY S V ++ E++ Sbjct: 191 WLVSKLPLGPAYYPRDIVSEHQERFFVSEIFREKIFQLYREEIPYCSQVNVVRYVEREAP 250 Query: 240 GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I I VE+ SQK I+LGK G+ +KT++ A+ +I + +++ +L + VKV++DW Sbjct: 251 AKDFIEIEILVEKESQKAILLGKEGKALKTLATAARLDIEDFVDRKCYLEIKVKVKEDW 309 >gi|165975963|ref|YP_001651556.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226741165|sp|B0BUA7|ERA_ACTPJ RecName: Full=GTPase Era gi|165876064|gb|ABY69112.1| GTP-binding protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 304 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E + Q +++D Sbjct: 7 QPKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVD 66 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM R + S I D++ VV+ + + +L ++ + ++L Sbjct: 67 TPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDD-EMVLNKLRAAKAPVVL 125 Query: 136 ILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D +K E L E++ K F E +SA +G + + +L + Sbjct: 126 AINKVDNIKEKDELLPHITELSQKFDFAE-ILPISAQRGKNVHILQKIVRKSLREGVHHF 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 185 PEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNERGTYEINGLILVERE 244 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 245 GQKKMVIGVKGQKIKTIGMEARADMERLFDNKVHLELWVKVKAGWADDERAL 296 >gi|229497021|ref|ZP_04390726.1| GTP-binding protein Era [Porphyromonas endodontalis ATCC 35406] gi|229316123|gb|EEN82051.1| GTP-binding protein Era [Porphyromonas endodontalis ATCC 35406] Length = 307 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 151/283 (53%), Gaps = 2/283 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG V +VG N GKSTL+N VG ++SI+T K QTTR + GIV+ + Q+V+ DTP Sbjct: 15 NYRSGFVNIVGNPNVGKSTLLNYLVGERLSIITSKAQTTRHRILGIVNTPDMQVVYSDTP 74 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ + M S + AD++ V D + N+ D L+ + + ++L++N Sbjct: 75 GVLKPNYKLQERMRAFSDQALTDADVLIYVTDVVERREKNL-DFLQAVGRLECPILLVIN 133 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + L E E + L+ + +SAT + + LP+AP + D + Sbjct: 134 KIDLTDQKHLEELVEEWHTLLPKAEILPISATNRFNVQPLKKRIEELLPIAPPYFEQDAL 193 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P F +EI REK+ L+ + + + V + ++ I IR VI VER SQK I Sbjct: 194 TDRPARFFVSEIIREKILLY-YTQEVPYAVEVVVEEFKESSQRIDIRAVIMVERESQKGI 252 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ++G G IK + + A++ + + ++ + L L V+V+KDW + Sbjct: 253 IIGHKGVAIKKLGIAARRPLEKFFDKHIRLELIVRVEKDWRQN 295 >gi|261401059|ref|ZP_05987184.1| GTP-binding protein Era [Neisseria lactamica ATCC 23970] gi|269208948|gb|EEZ75403.1| GTP-binding protein Era [Neisseria lactamica ATCC 23970] Length = 318 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 160/290 (55%), Gaps = 11/290 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 25 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDT 84 Query: 78 PGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 PG D + L RL+ + + D V VV++ R + +LK++ K + +I Sbjct: 85 PGF--QTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDAD-RVVLKQLPKHTP-VI 140 Query: 135 LILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 L++NKID K +R +A +A VSA G ++L + LP + Sbjct: 141 LVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVP 200 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V+ Sbjct: 201 MYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVD 259 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 260 KESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 309 >gi|302560729|ref|ZP_07313071.1| GTP-binding protein Era [Streptomyces griseoflavus Tu4000] gi|302478347|gb|EFL41440.1| GTP-binding protein Era [Streptomyces griseoflavus Tu4000] Length = 320 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/298 (32%), Positives = 158/298 (53%), Gaps = 19/298 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV +++Q++ +DTPG+ Sbjct: 20 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHREDAQLILVDTPGL 79 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D + + + +++ + KE+A + + I I Sbjct: 80 HKPRTLLGERLNDVVRTTWAEV---DAIGFCIPADQKIGPGDRFIAKELAGIKKTPKIAI 136 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIE------KTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + K D V + L EQ IA L+ E + VSAT + + L +P P Sbjct: 137 VTKTDLVDGKALAEQL-IAVDLLGKELGITWAEIIPVSATANQQVGLLADLLIPLMPEGP 195 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIR 245 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 196 ALYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIH 255 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++ERPSQK I++G G+ +K + ++++K+I +L PV L L VKV KDW DPK Sbjct: 256 ANLFIERPSQKGIVIGPKGKRLKDVGIKSRKQIEALLGTPVFLDLHVKVAKDWQRDPK 313 >gi|254804569|ref|YP_003082790.1| GTP-binding protein Era [Neisseria meningitidis alpha14] gi|254668111|emb|CBA04671.1| GTP-binding protein Era [Neisseria meningitidis alpha14] Length = 313 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 160/290 (55%), Gaps = 11/290 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 20 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDT 79 Query: 78 PGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 PG D + L RL+ + + D V VV++ R + +LK++ K + +I Sbjct: 80 PGF--QTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDAD-RVVLKQLPKHTP-VI 135 Query: 135 LILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 L++NKID K +R +A +A VSA G ++L + LP + Sbjct: 136 LVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVP 195 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V+ Sbjct: 196 MYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVD 254 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 255 KESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 304 >gi|301168614|emb|CBW28204.1| membrane-associated, 16S rRNA-binding GTPase [Haemophilus influenzae 10810] Length = 302 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 158/291 (54%), Gaps = 5/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 6 DKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDT 65 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S I D++ VVD + +L ++ + ++L Sbjct: 66 PGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLA 124 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D +K + L +++K F +SA +G+ ++ + +L + Sbjct: 125 INKVDNIKNKDDLLPFITGLSSKFNFAH-IVPISAQRGNNVHELEKIVRQSLREGVHHFP 183 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 184 EDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVEREG 243 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 QKKMVIGAGGQKIKTIGMEARVDMERLFDNKVHLELWVKVKSGWADDERAL 294 >gi|216264432|ref|ZP_03436424.1| GTP-binding protein Era [Borrelia burgdorferi 156a] gi|224532362|ref|ZP_03672992.1| GTP-binding protein Era [Borrelia burgdorferi WI91-23] gi|224533272|ref|ZP_03673866.1| GTP-binding protein Era [Borrelia burgdorferi CA-11.2a] gi|215980905|gb|EEC21712.1| GTP-binding protein Era [Borrelia burgdorferi 156a] gi|224512669|gb|EEF83040.1| GTP-binding protein Era [Borrelia burgdorferi WI91-23] gi|224513437|gb|EEF83794.1| GTP-binding protein Era [Borrelia burgdorferi CA-11.2a] gi|312147890|gb|ADQ30549.1| GTP-binding protein Era [Borrelia burgdorferi JD1] gi|312149136|gb|ADQ29207.1| GTP-binding protein Era [Borrelia burgdorferi N40] Length = 290 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 159/291 (54%), Gaps = 15/291 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M++ S+I +++ ++D + + +L+ I + ++ILNKI Sbjct: 62 HLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFM-------VSATKGHGCDDVLNYLCSTLPLAPWVY 193 D LE +I F+++ + +SA K +++ N + P Y Sbjct: 122 D-------LENTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYY 174 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + +D + +EI REK +L +E+PYS V + E KK GS+ IR I+V Sbjct: 175 PQEYYTDQEINFRISEIIREKAIENLKEELPYSLYVDIDTLENKK-GSLFIRANIFVANE 233 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 SQK I++GKNG+ IK+I A+K IA+I E +L L VK++K+W + K Sbjct: 234 SQKGIIVGKNGKEIKSIGERARKTIAKIFETKCNLFLQVKLKKNWNKEDKL 284 >gi|221217963|ref|ZP_03589430.1| GTP-binding protein Era [Borrelia burgdorferi 72a] gi|221192269|gb|EEE18489.1| GTP-binding protein Era [Borrelia burgdorferi 72a] Length = 290 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 159/291 (54%), Gaps = 15/291 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNNIKGIFTDDRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M++ S+I +++ ++D + + +L+ I + ++ILNKI Sbjct: 62 HLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFM-------VSATKGHGCDDVLNYLCSTLPLAPWVY 193 D LE +I F+++ + +SA K +++ N + P Y Sbjct: 122 D-------LENTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYY 174 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + +D + +EI REK +L +E+PYS V + E KK GS+ IR I+V Sbjct: 175 PQEYYTDQEINFRISEIIREKAIENLKEELPYSLYVDIDTLENKK-GSLFIRANIFVANE 233 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 SQK I++GKNG+ IK+I A+K IA+I E +L L VK++K+W + K Sbjct: 234 SQKGIIVGKNGKEIKSIGERARKTIAKIFETKCNLFLQVKLKKNWNKEDKL 284 >gi|260655937|ref|ZP_05861406.1| GTP-binding protein Era [Jonquetella anthropi E3_33 E1] gi|260629553|gb|EEX47747.1| GTP-binding protein Era [Jonquetella anthropi E3_33 E1] Length = 303 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 153/284 (53%), Gaps = 6/284 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG AL G N GKS+LVNR + ++S+VT K QTTR + G+ ++++ QIVF+DTPG+ Sbjct: 6 KSGVAALAGRPNVGKSSLVNRLLDFRLSVVTPKPQTTRDAILGLYNDEDCQIVFVDTPGV 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + ++ + + AD++ VV R ++ + + + +IL +NK Sbjct: 66 HEPEHRLGERLVDRALEALDEADVILYVVTIDDRPFWSENRTIIGRLKETKTPVILCVNK 125 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D E++L + K + I VSA G + +L + S LP +Y DQ+ Sbjct: 126 VDLPGSREKILPVISLFQKELDIRDAIPVSARDGTHRELLLQTVKSYLPEGVPLYPDDQV 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW---EEKKDGS-ILIRQVIYVERPS 254 +D P AEI R K +E+P+S V +++ +E D + +LIR +YVERP Sbjct: 186 TDRPERFLAAEIIRGKAMEMTEEEVPHSLAVEIDEYKSPDEYPDRTDLLIRATVYVERPG 245 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 Q+ I+LG G+ I+ + A+KE+ + V L L+VKV +DW Sbjct: 246 QRAILLGTGGRMIRAVGSAARKELERLTGHKVFLDLWVKVSQDW 289 >gi|118444749|ref|YP_878552.1| GTP-binding protein Era [Clostridium novyi NT] gi|189037263|sp|A0Q1Q0|ERA_CLONN RecName: Full=GTPase Era gi|118135205|gb|ABK62249.1| GTP-binding protein Era [Clostridium novyi NT] Length = 294 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 152/278 (54%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++++G N GKSTL N +G K+SIV+ + QTTR+ +R +++ + Q+VFLDTPGI Sbjct: 3 KSGFISIIGRPNVGKSTLTNEILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M++ + ++ D++ + E+ +L+ + + L++NKI Sbjct: 63 HKPRHKLGEYMVKAAETSTDEVDLIVFITTPEGEISKGDELILEGLKNSKKPVFLVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E + + + ++ + + +SA K D +L + +P P Y D I+D Sbjct: 123 DENPQELVAKTLKQYSEYMDFAEIIPISARKSKNVDTLLELMIKYMPEGPKYYPEDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + +EI REK L +E+P+ V ++ K G+ I + E+ S K I++ Sbjct: 183 VQERFVVSEIIREKALKLLSEEVPHGIAVEIISMKQSKRGTYHIDANLLCEKDSHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK GQ +KTIS A+++I + L+ V+L ++VKV+K+W Sbjct: 243 GKGGQKLKTISTYARQDIEKFLDAKVNLKVWVKVKKEW 280 >gi|332289237|ref|YP_004420089.1| GTP-binding protein Era [Gallibacterium anatis UMN179] gi|330432133|gb|AEC17192.1| GTP-binding protein Era [Gallibacterium anatis UMN179] Length = 307 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 161/298 (54%), Gaps = 5/298 (1%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 +H+ Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI ++ Sbjct: 4 DHQTDNQQETYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIDTDGAY 63 Query: 71 QIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 Q V++DTPG+ K + ++LM R + S I D++ VVD + +L ++ Sbjct: 64 QAVYVDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWTDDDEMVLTKLRSA 122 Query: 130 SSRLILILNKIDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + ++L +NKID VK E L ++ K F E +SA +G+ + + +L Sbjct: 123 KAPVVLAINKIDNVKNKDELLPFIQQLTEKFSFKE-VVPISAQRGNNVHQLKAIVRQSLR 181 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 + + ++D +EI REKL + +E+PYS V E+++ + G+ I + Sbjct: 182 KGVHHFPEEYVTDRSQRFMASEIIREKLMRFMGEELPYSVTVEIEQFKINERGTYEINGL 241 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I VER QKK+++G GQ +KTI EA++++ + + VHL L+VKV+ W D + Sbjct: 242 ILVERDGQKKMVIGHQGQKLKTIGTEARQDMQRLFDAKVHLELWVKVKSGWADDERAL 299 >gi|254433531|ref|ZP_05047039.1| GTP-binding protein Era [Nitrosococcus oceani AFC27] gi|207089864|gb|EDZ67135.1| GTP-binding protein Era [Nitrosococcus oceani AFC27] Length = 303 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 158/290 (54%), Gaps = 10/290 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A++G N GKS+L+NR +G K+SI + + QTTR + GI + Q +++DTPG Sbjct: 11 RCGYIAIIGRPNVGKSSLLNRILGQKISITSRRPQTTRHRILGIKTLAGIQAIYVDTPGF 70 Query: 81 FNAKDSYHKLMIRLSW----STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 +D +LM R ST++ D++ V+++ + K + +L+ + + + ++L+ Sbjct: 71 ---QDKERRLMNRYLNRAIDSTLEEVDLILFVIEAFQFTKDD-EWILQRLRRCAVPIVLV 126 Query: 137 LNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 LNK+D + + LL +K VSA KG + + + LP P Y Sbjct: 127 LNKVDRIIDKKSLLPAIATLSKKREFAAIIPVSAWKGDNVAVLESKVAELLPEGPMAYPE 186 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ++D AE+ REKL +L +E+PY+ V E EE+K+ I IYVERP Q Sbjct: 187 DQVTDRSERFLAAELIREKLTRYLGQELPYALTVFVESLEEEKN-LYRIAATIYVERPGQ 245 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++GK G+ +K I EA+ ++ + V+L L+VKV++ W + + Sbjct: 246 KAIVIGKKGEGLKRIGYEARLDMERMFGSKVYLELWVKVREGWSDNERLL 295 >gi|223889472|ref|ZP_03624058.1| GTP-binding protein Era [Borrelia burgdorferi 64b] gi|223885158|gb|EEF56262.1| GTP-binding protein Era [Borrelia burgdorferi 64b] Length = 290 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 160/288 (55%), Gaps = 3/288 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M++ S+I +++ ++D + + +L+ I + ++ILNKI Sbjct: 62 HLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKI 121 Query: 141 DCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K ++ E + + K + +SA K +++ N + P Y + + Sbjct: 122 D-LKNTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYYT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D + +EI REK +L +E+PYS V + E KK GS+ IR I+V SQK I+ Sbjct: 181 DQEINFRISEIIREKAIENLKEELPYSLYVDIDTLENKK-GSLFIRANIFVANESQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GKNG+ IK+I A+K IA+I E +L L VK++K+W + K + Sbjct: 240 VGKNGKEIKSIGERARKTIAKIFETKCNLFLQVKLKKNWNKEDKLIKR 287 >gi|313895890|ref|ZP_07829444.1| ribosome biogenesis GTPase Era [Selenomonas sp. oral taxon 137 str. F0430] gi|312975315|gb|EFR40776.1| ribosome biogenesis GTPase Era [Selenomonas sp. oral taxon 137 str. F0430] Length = 298 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 152/281 (54%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 ++ +SG A++G N GKSTL+N +G K++I++ K QTTRS + I++++++Q++FLDT Sbjct: 2 NHYKSGFAAVIGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTQEDAQVIFLDT 61 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ K M + + + D+V VVD+ ++ +LK++ K ++L + Sbjct: 62 PGVHKPKHKLGSHMAKATEGALHGVDVVVFVVDATEKMGAGEQYILKQLEKVRVPVLLAV 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID ++ E L K +SA +L+ + LP P Y D Sbjct: 122 NKIDLLRREETLPIIAGYAKTYDFAGIVPISARAEENLAGLLDEIKKHLPEGPRYYPEDM 181 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P AE+ REK EIP++ V E+ + G + +R VIYVER SQK Sbjct: 182 VTDQPERLIIAELVREKALELTRDEIPHAVAVDIEEITTRAKGDVYVRAVIYVERESQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++G G ++TI A+ +I +L V+L L+VK ++DW Sbjct: 242 IVIGARGALLRTIGARARADIETLLGAKVYLDLWVKTRRDW 282 >gi|229820244|ref|YP_002881770.1| GTP-binding protein Era [Beutenbergia cavernae DSM 12333] gi|229566157|gb|ACQ80008.1| GTP-binding protein Era [Beutenbergia cavernae DSM 12333] Length = 312 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 155/295 (52%), Gaps = 7/295 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + R+G ++VG NAGKSTLVN VG KV+I + + QTTR VRGIV + Q+V + Sbjct: 11 VPEGFRAGFASVVGRPNAGKSTLVNALVGTKVAITSGRPQTTRHTVRGIVHLPDGQLVLV 70 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPG+ + + + L +T+ D++ + + +++ + +++ + ++ Sbjct: 71 DTPGLHRPRTLLGRRLNDLVLATLAEVDVIAFCLPADQKVGPGDAYIARQLEDVRTPVVA 130 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 + K V +RL+ ++L VSAT+ + D V + L LP +P +Y Sbjct: 131 LATKAATVSRQRLVTHLAEIDRLGRWADIVPVSATEQYQVDVVTDVLLGHLPESPPLYPD 190 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE---KKDGS----ILIRQVI 248 +++D P AE+ RE + E+P+S VV ++ E K+DG+ + +R I Sbjct: 191 GELTDEPEHVMVAELVREAALEGVRDELPHSLAVVVDEIVERPGKEDGAGSGLLDVRVNI 250 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +VER SQK I++G G ++ + A+ I +L V L L VKV KDW DPK Sbjct: 251 FVERDSQKAIVIGAKGSRLRDVGTTARHGIEALLGARVFLDLRVKVAKDWQRDPK 305 >gi|77165915|ref|YP_344440.1| GTP-binding protein Era [Nitrosococcus oceani ATCC 19707] gi|76884229|gb|ABA58910.1| GTP-binding protein Era [Nitrosococcus oceani ATCC 19707] Length = 306 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 158/290 (54%), Gaps = 10/290 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A++G N GKS+L+NR +G K+SI + + QTTR + GI + Q +++DTPG Sbjct: 14 RCGYIAIIGRPNVGKSSLLNRILGQKISITSRRPQTTRHRILGIKTLAGIQAIYVDTPGF 73 Query: 81 FNAKDSYHKLMIRLSW----STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 +D +LM R ST++ D++ V+++ + K + +L+ + + + ++L+ Sbjct: 74 ---QDKERRLMNRYLNRAIDSTLEEVDLILFVIEAFQFTKDD-EWILQRLRRCAVPIVLV 129 Query: 137 LNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 LNK+D + + LL +K VSA KG + + + LP P Y Sbjct: 130 LNKVDRIIDKKSLLPAIATLSKKREFAAIIPVSAWKGDNVAVLESKVAELLPEGPMAYPE 189 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ++D AE+ REKL +L +E+PY+ V E EE+K+ I IYVERP Q Sbjct: 190 DQVTDRSERFLAAELIREKLTRYLGQELPYALTVFVESLEEEKN-LYRIAATIYVERPGQ 248 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++GK G+ +K I EA+ ++ + V+L L+VKV++ W + + Sbjct: 249 KAIVIGKKGEGLKRIGYEARLDMERMFGSKVYLELWVKVREGWSDNERLL 298 >gi|307153467|ref|YP_003888851.1| GTP-binding protein Era [Cyanothece sp. PCC 7822] gi|306983695|gb|ADN15576.1| GTP-binding protein Era [Cyanothece sp. PCC 7822] Length = 318 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 156/282 (55%), Gaps = 8/282 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+N+ VG KV+I + QTTR+ ++GI++ ++QI+F+DTPGI Sbjct: 24 KSGFVAIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLQGILTTDQAQIIFVDTPGI 83 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K++++ + I D+V LVVDS E +++ + + +IL LNK Sbjct: 84 HKPHHELGKVLVKNAQIAINAVDLVLLVVDSSIEAGGGDRYIIELVEDTRTPVILGLNKS 143 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D +P E +L + MV SA +G G + + N L L P+ Y D + Sbjct: 144 DQ-QPANYEPLDESYTRLSQLHHWPMVKFSALQGTGTEQLQNLLIEHLEPGPYYYPPDLV 202 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR--QVIYVERPSQK 256 +D P E+ RE++ L +E+P+S VV E EE L R I VER SQK Sbjct: 203 TDQPERFIMGELIREQILLLTRQEVPHSVAVVVENVEETPK---LTRVFAAINVERNSQK 259 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GKNG +K I A++ I ++++ V+L LFVKV+ W Sbjct: 260 GIIIGKNGSMLKAIGSAAREAIQKLIDGEVYLNLFVKVEPKW 301 >gi|15595005|ref|NP_212794.1| GTP-binding protein Era [Borrelia burgdorferi B31] gi|195941480|ref|ZP_03086862.1| GTP-binding protein Era [Borrelia burgdorferi 80a] gi|218249442|ref|YP_002375160.1| GTP-binding protein Era [Borrelia burgdorferi ZS7] gi|225549958|ref|ZP_03770919.1| GTP-binding protein Era [Borrelia burgdorferi 118a] gi|226320503|ref|ZP_03796069.1| GTP-binding protein Era [Borrelia burgdorferi 29805] gi|226321358|ref|ZP_03796885.1| GTP-binding protein Era [Borrelia burgdorferi Bol26] gi|3334175|sp|O51604|ERA_BORBU RecName: Full=GTPase Era gi|226741167|sp|B7J2L5|ERA_BORBZ RecName: Full=GTPase Era gi|2688587|gb|AAC67005.1| GTP-binding protein (era) [Borrelia burgdorferi B31] gi|218164630|gb|ACK74691.1| GTP-binding protein Era [Borrelia burgdorferi ZS7] gi|225369417|gb|EEG98869.1| GTP-binding protein Era [Borrelia burgdorferi 118a] gi|226233154|gb|EEH31906.1| GTP-binding protein Era [Borrelia burgdorferi Bol26] gi|226234145|gb|EEH32860.1| GTP-binding protein Era [Borrelia burgdorferi 29805] Length = 290 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 159/285 (55%), Gaps = 3/285 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNNIKGIFTDDRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M++ S+I +++ ++D + + +L+ I + ++ILNKI Sbjct: 62 HLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVILNKI 121 Query: 141 DCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K ++ E + + K + +SA K +++ N + P Y + + Sbjct: 122 D-LKNTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYYT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D + +EI REK +L +E+PYS V + E KK GS+ IR I+V SQK I+ Sbjct: 181 DQEINFRISEIIREKAIENLKEELPYSLYVDIDTLENKK-GSLFIRANIFVANESQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +GKNG+ IK+I A+K IA+I E +L L VK++K+W + K Sbjct: 240 VGKNGKEIKSIGERARKTIAKIFETKCNLFLQVKLKKNWNKEDKL 284 >gi|224373288|ref|YP_002607660.1| GTP-binding protein Era [Nautilia profundicola AmH] gi|223589409|gb|ACM93145.1| GTP-binding protein Era [Nautilia profundicola AmH] Length = 293 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 154/287 (53%), Gaps = 3/287 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G NAGKSTL+N +G K+++V+ K +R V IV + QI+ LDTPG+ Sbjct: 3 KSGFVGILGKPNAGKSTLLNWLLGEKIALVSPKANASRKRVNAIVMHGDDQIILLDTPGL 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + +K M++ + + +D+V + D +L + ++ E+ ++ I++L K Sbjct: 63 HEKEKLLNKFMLKEALKALSDSDLVLFLADVRDDL--SGYEWFLELNTKNIPHIVVLTKT 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V E + ++ E KL +SA +G G D++LN + LP P+ Y + IS Sbjct: 121 DLVSEEEVRKKIEEYKKLGKALDVIPISAVEGKGKDELLNAIVKYLPEHPYYYDPEIIST 180 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + E+ RE LF L E+PY + ++ EK EE D I I VER SQK +++ Sbjct: 181 EHIRDIYKELIREALFEKLGDELPYETDILIEKLEE-FDNLDKIYATIIVERHSQKGMII 239 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 GK G+ IK I + A+K + + + ++L L+VKV W + K + Sbjct: 240 GKRGKKIKEIGIYARKLLEQFSGKKIYLELYVKVVPGWSKNKKMLEE 286 >gi|257439767|ref|ZP_05615522.1| GTP-binding protein Era [Faecalibacterium prausnitzii A2-165] gi|257197787|gb|EEU96071.1| GTP-binding protein Era [Faecalibacterium prausnitzii A2-165] Length = 306 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 149/283 (52%), Gaps = 4/283 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++ S VA++G N GKS+L NR VG KV+IVT K QTTR+ + G+V+ Q V LDTP Sbjct: 6 DTSSVFVAVIGRPNVGKSSLTNRLVGEKVAIVTSKPQTTRTRITGVVTRGPLQYVLLDTP 65 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ A + K M + + +I D+ ++ + + L L+ + I ++N Sbjct: 66 GVHKAHNKLGKRMDKTASDSIADVDVSMMLFEPYGALNEPEMVLVDALRSSGGPAIAVIN 125 Query: 139 KIDCVKPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K D VK LE +AE+ VF + + VS C+++ + L P + D Sbjct: 126 KTDLVKEPADLEARKAELKELGVF-DAIYTVSVRADDHCEELFDALSQYAVEGPHYFDDD 184 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV-IYVERPSQ 255 +D+P AE+ REK L++ EIP+ VV E+++E+ ++ V IY ER S Sbjct: 185 AYTDMPEKELVAEVIREKALLYMRDEIPHGIAVVVERFKERPGTDLVDIDVNIYCERESH 244 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K +++GK G +K I+ A+ + E L V+L +VKV+ DW Sbjct: 245 KGMVIGKGGAMLKKIASSARADCEEFLGCRVNLQCWVKVKADW 287 >gi|313158000|gb|EFR57406.1| ribosome biogenesis GTPase Era [Alistipes sp. HGB5] Length = 293 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 149/283 (52%), Gaps = 2/283 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N VG K+SI+T K QTTR + GIVS ++ QIV+ DTPGI Sbjct: 3 KSGFVNIIGNPNVGKSTLMNALVGEKLSIITSKAQTTRHRIMGIVSGEDFQIVYSDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M++ + AD++ V D+ + + +++ I + ++++NKI Sbjct: 63 LKPSYKLQESMMKFVTGAVTDADVILYVTDTVEQGDRS-AEIIGRIRESGIPTVVVINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D PE L + + + + SA + + + + + LP P Y + ++D Sbjct: 122 DLSTPEALDALVDKWRQELPEAQIVPASAKENFNIEGLFKTILALLPEGPAFYPKETLTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + F +EI REK+ KEIPY + + + E+ I IYV R SQK I++ Sbjct: 182 KTLRFFASEIIREKILKFYDKEIPYCCEIEIDSYREEPTID-RIAATIYVARDSQKGILI 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G G+ +K + A++++ E L + V L LFVKV DW ++ + Sbjct: 241 GHKGEKLKRVGQTAREDMEEFLGKKVFLQLFVKVSDDWRNNER 283 >gi|161869627|ref|YP_001598794.1| GTP-binding protein Era [Neisseria meningitidis 053442] gi|161595180|gb|ABX72840.1| GTPase [Neisseria meningitidis 053442] Length = 311 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 160/290 (55%), Gaps = 11/290 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 18 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDT 77 Query: 78 PGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 PG D + L RL+ + + D V VV++ R + +LK++ K + ++ Sbjct: 78 PGF--QTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDAD-RVVLKQLPKHTP-VV 133 Query: 135 LILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 L++NKID K +R +A +A VSA G ++L + LP + Sbjct: 134 LVVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVP 193 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V+ Sbjct: 194 MYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVD 252 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 253 KESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 302 >gi|254490819|ref|ZP_05104002.1| GTP-binding protein Era [Methylophaga thiooxidans DMS010] gi|224463991|gb|EEF80257.1| GTP-binding protein Era [Methylophaga thiooxydans DMS010] Length = 301 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 162/291 (55%), Gaps = 15/291 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL+NR +G K+ I + + QTTR + GI + Q +++DTPG+ Sbjct: 7 RSGYVAIIGRPNVGKSTLINRILGQKLCITSRRPQTTRHRILGIKTNDSGQFIYVDTPGM 66 Query: 81 F-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-----LI 134 + K + ++ M R + S+I+ D++ VV+ LK D K + KR + +I Sbjct: 67 HSDNKKAMNRYMNRAAASSIEDVDVILFVVEG---LKWTDED--KRVLKRLQQDARCPVI 121 Query: 135 LILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L+LNK D + K L + E+A + F VSA KG D + + +P + Sbjct: 122 LVLNKADKLDDKAALLPQIQELAAQFDF-AAVVPVSARKGMNTDLLEQEIAKLMPEGEMI 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 + DQ++D +EI REKLF +L +E+PY S V + E+++G I V+YVER Sbjct: 181 FDEDQLTDRSSRFLASEIVREKLFRYLGQELPY-SLTVEVEQFEEEEGMYRIGTVVYVER 239 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++GK G+ +K I +A+ E+ ++ V L ++VKV++ W + + Sbjct: 240 SGQKSIVIGKKGEQLKLIGQDARMEMEQLFGCKVFLQIWVKVREGWSDNER 290 >gi|148981906|ref|ZP_01816564.1| GTP-binding protein Era [Vibrionales bacterium SWAT-3] gi|145960707|gb|EDK26049.1| GTP-binding protein Era [Vibrionales bacterium SWAT-3] Length = 323 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 161/291 (55%), Gaps = 6/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G +A+VG N GKSTL+N +G K+SI + K QTTR + G+ +E + Q +F+DT Sbjct: 25 ENQHCGFIAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVETEGDYQAIFVDT 84 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + + +L ++ K ++L Sbjct: 85 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDGTHWTE-DDEMVLNKLKKTDFPVVLC 143 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V+ + Q E++ K+ FI+ +SA +G D + ++ LP A + Sbjct: 144 INKVDNVQDRTNVMQHMMEVSKKMDFID-VVPISAKQGKNIDVLRKHVREHLPKATHHFP 202 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 + ++D +EI REKL E+PYS V E+++ D I +I VER Sbjct: 203 EEYVTDRSQRFMASEIIREKLMRFTGDELPYSVTVEIERFDYNPDNDGFHINALILVERT 262 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 263 GQKKMVIGKAGEKIKTIGREARIDMEELFGRKVYLETWVKVKSGWADDERA 313 >gi|307823640|ref|ZP_07653869.1| GTP-binding protein Era [Methylobacter tundripaludum SV96] gi|307735625|gb|EFO06473.1| GTP-binding protein Era [Methylobacter tundripaludum SV96] Length = 293 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 159/287 (55%), Gaps = 8/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VAL+G N GKSTL+N + K+SI + K QTTR + GI + Q +++DTPG+ N Sbjct: 4 GFVALIGRPNVGKSTLMNHLLKQKISITSRKPQTTRHRILGINTTDAGQAIYMDTPGMHN 63 Query: 83 A-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 + K + ++ + R + +T+ D++ ++D L + +D + K++ + +IL +NK Sbjct: 64 SEKRALNRYLNRTAETTLLGVDVIVWLIDG---LSWHEYDEVIFKKLEQAGLPVILAVNK 120 Query: 140 IDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D V E +L A + +SA K D + + + + LP +Y DQ+ Sbjct: 121 VDKVADKEAILTFFNDAQHRFPFKHLVPISALKRTNLDQLEDLIMALLPERDLIYPEDQV 180 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D AEI REKL L E+PY+ V E++EEK G I +I+VER +QK I Sbjct: 181 TDRSERFLAAEIVREKLTRRLGDELPYALTVEIERYEEKP-GITKIYAIIWVERLTQKNI 239 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++GK+G +K + +A+ +I ++L Q V+L L+VKV+K W + Sbjct: 240 VIGKDGDMLKKVGTDARMDIEKLLGQKVYLQLWVKVKKGWSDSERAL 286 >gi|307245401|ref|ZP_07527489.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254356|ref|ZP_07536194.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258814|ref|ZP_07540546.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853742|gb|EFM85959.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862655|gb|EFM94611.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867165|gb|EFM99021.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 304 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 159/292 (54%), Gaps = 5/292 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E + Q +++D Sbjct: 7 QPKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVD 66 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM R + S I D++ VV+ + + +L ++ + ++L Sbjct: 67 TPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDD-EMVLNKLRAAKAPVVL 125 Query: 136 ILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D +K E L E++ K F E +SA +G + + +L + Sbjct: 126 AINKVDNIKEKDELLPHITELSKKFDFAE-ILPISAQRGKNVHILQKIVRKSLREGGHHF 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ + G+ I +I VER Sbjct: 185 PEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNERGTYEINGLILVERE 244 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKK+++G GQ IKTI +EA+ ++ + + V+L L+VKV+ W D + Sbjct: 245 GQKKMVIGAKGQKIKTIGMEARADMERLFDNKVYLELWVKVKAGWADDERAL 296 >gi|27364935|ref|NP_760463.1| GTPase Era [Vibrio vulnificus CMCP6] gi|37681014|ref|NP_935623.1| GTP-binding protein Era [Vibrio vulnificus YJ016] gi|320155321|ref|YP_004187700.1| GTP-binding protein Era [Vibrio vulnificus MO6-24/O] gi|31340056|sp|Q8DC75|ERA_VIBVU RecName: Full=GTPase Era gi|61212428|sp|Q7MHN9|ERA_VIBVY RecName: Full=GTPase Era gi|27361081|gb|AAO09990.1| GTP-binding protein Era [Vibrio vulnificus CMCP6] gi|37199764|dbj|BAC95594.1| GTP-binding protein Era [Vibrio vulnificus YJ016] gi|319930633|gb|ADV85497.1| GTP-binding protein Era [Vibrio vulnificus MO6-24/O] Length = 320 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 167/302 (55%), Gaps = 8/302 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F E K +N G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ ++ Sbjct: 12 FSTEKKSTSSENQHCGFIAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTD 71 Query: 68 KESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + Q +++DTPG+ K + ++LM R + S++ ++V +VD + +L ++ Sbjct: 72 GDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDG-THWTNDDEMVLNKL 130 Query: 127 AKRSSRLILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 K + ++L +NK+D V + E + E++ K+ F++ +SA +G D + ++ Sbjct: 131 QKANFPVVLCVNKVDNVQDRNEVMQHMMEMSKKMNFVD-VVPISAKQGKNIDVLRKHVRD 189 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSI 242 LP A + + ++D +EI REKL E+PYS V E+++ + DG Sbjct: 190 HLPKAVHHFPEEYVTDRSQRFMASEIVREKLMRFTGDELPYSVTVEIERFDYNPETDG-F 248 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I +I VER QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D Sbjct: 249 HINALILVERSGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDE 308 Query: 303 KC 304 + Sbjct: 309 RA 310 >gi|262166501|ref|ZP_06034238.1| GTP-binding protein Era [Vibrio mimicus VM223] gi|262026217|gb|EEY44885.1| GTP-binding protein Era [Vibrio mimicus VM223] Length = 324 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 160/286 (55%), Gaps = 6/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ ++ Q +++DTPG+ Sbjct: 31 GFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHI 90 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V VV+ + + ++ K + ++L +NK+D Sbjct: 91 EEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD 149 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK E +L E++ ++ F++ +SA +G D + ++ LP A + + ++ Sbjct: 150 QVKDRNEVMLHMLELSKRMQFVD-IVPISAKQGKNTDVLKKHVRDHLPKAVHHFPEEYVT 208 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKI 258 D +EI REKL +E+PYS V E+++ D I +I VER QKK+ Sbjct: 209 DRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERIGQKKM 268 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 269 VIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 314 >gi|296119858|ref|ZP_06838412.1| GTP-binding protein Era [Corynebacterium ammoniagenes DSM 20306] gi|295967012|gb|EFG80283.1| GTP-binding protein Era [Corynebacterium ammoniagenes DSM 20306] Length = 332 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 158/294 (53%), Gaps = 10/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RG+V +++QI+ +DTPG+ Sbjct: 35 RSGFVSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGLVHREDAQIIVVDTPGL 94 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T + D++ L + + ++ I D ++EIA ++ +I I+ Sbjct: 95 HRPRTLLGERLNEIVKETYQDVDVIGLTIPADEKIGPGDRWILDNVREIAPKTP-IIGIV 153 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K+D +++ Q ++L+ E VSA + D+++ LP P Y Sbjct: 154 TKLDRASKDQVGAQLLALHELLSAEDPDAVVIPVSAAENVQIDELIGVFIEALPEGPKFY 213 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVE 251 D ++D +E+ RE L E+P+S V ++ +++G + + +IYVE Sbjct: 214 PDDHLTDDDNNKRISELIREAALSGLKDELPHSVAVEVDEIFPSAEREGVLDVHAIIYVE 273 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 RP QKKI+ GK+G+ ++ I A+KEI ++L Q V L L +KV K+W DPK Sbjct: 274 RPGQKKILEGKDGRRLRRIVSNARKEIIQLLGQNVFLDLRIKVLKNWQSDPKSL 327 >gi|121728973|ref|ZP_01681977.1| GTP-binding protein Era [Vibrio cholerae V52] gi|147674346|ref|YP_001217962.1| GTP-binding protein Era [Vibrio cholerae O395] gi|262167291|ref|ZP_06035001.1| GTP-binding protein Era [Vibrio cholerae RC27] gi|121628739|gb|EAX61206.1| GTP-binding protein Era [Vibrio cholerae V52] gi|146316229|gb|ABQ20768.1| GTP-binding protein Era [Vibrio cholerae O395] gi|227014352|gb|ACP10562.1| GTP-binding protein Era [Vibrio cholerae O395] gi|262024266|gb|EEY42957.1| GTP-binding protein Era [Vibrio cholerae RC27] Length = 324 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 160/286 (55%), Gaps = 6/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ ++ Q +++DTPG+ Sbjct: 31 GFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHI 90 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V VV+ + + ++ K + ++L +NK+D Sbjct: 91 EEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD 149 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK E +L E++ ++ F++ +SA +G D + ++ LP A + + ++ Sbjct: 150 QVKDRNEVMLHMLELSKRMQFVD-IVPISAKQGKNTDVLKKHVRDHLPKAVHHFPEEYVT 208 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKI 258 D +EI REKL +E+PYS V E+++ D I +I VER QKK+ Sbjct: 209 DRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERIGQKKM 268 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 269 VIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 314 >gi|22125198|ref|NP_668621.1| GTP-binding protein Era [Yersinia pestis KIM 10] gi|45442305|ref|NP_993844.1| GTP-binding protein Era [Yersinia pestis biovar Microtus str. 91001] gi|51597205|ref|YP_071396.1| GTP-binding protein Era [Yersinia pseudotuberculosis IP 32953] gi|108808447|ref|YP_652363.1| GTP-binding protein Era [Yersinia pestis Antiqua] gi|108811370|ref|YP_647137.1| GTP-binding protein Era [Yersinia pestis Nepal516] gi|145598836|ref|YP_001162912.1| GTP-binding protein Era [Yersinia pestis Pestoides F] gi|149365389|ref|ZP_01887424.1| putative GTP-binding protein [Yersinia pestis CA88-4125] gi|153948940|ref|YP_001400118.1| GTP-binding protein Era [Yersinia pseudotuberculosis IP 31758] gi|162419723|ref|YP_001607936.1| GTP-binding protein Era [Yersinia pestis Angola] gi|165925230|ref|ZP_02221062.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str. F1991016] gi|166008313|ref|ZP_02229211.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. E1979001] gi|166212599|ref|ZP_02238634.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. B42003004] gi|167398745|ref|ZP_02304269.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421165|ref|ZP_02312918.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423101|ref|ZP_02314854.1| GTP-binding protein Era [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467391|ref|ZP_02332095.1| GTP-binding protein Era [Yersinia pestis FV-1] gi|170023436|ref|YP_001719941.1| GTP-binding protein Era [Yersinia pseudotuberculosis YPIII] gi|186896302|ref|YP_001873414.1| GTP-binding protein Era [Yersinia pseudotuberculosis PB1/+] gi|218929791|ref|YP_002347666.1| GTP-binding protein Era [Yersinia pestis CO92] gi|229838282|ref|ZP_04458441.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895522|ref|ZP_04510693.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis Pestoides A] gi|229898846|ref|ZP_04513991.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis biovar Orientalis str. India 195] gi|229901620|ref|ZP_04516742.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis Nepal516] gi|270489809|ref|ZP_06206883.1| GTP-binding protein Era [Yersinia pestis KIM D27] gi|294504510|ref|YP_003568572.1| GTP-binding protein Era [Yersinia pestis Z176003] gi|21263587|sp|Q8ZD71|ERA_YERPE RecName: Full=GTPase Era gi|81691694|sp|Q667V2|ERA_YERPS RecName: Full=GTPase Era gi|123245663|sp|Q1C554|ERA_YERPA RecName: Full=GTPase Era gi|123373347|sp|Q1CKE3|ERA_YERPN RecName: Full=GTPase Era gi|189037686|sp|A7FFU0|ERA_YERP3 RecName: Full=GTPase Era gi|189037837|sp|A4TKX7|ERA_YERPP RecName: Full=GTPase Era gi|226741407|sp|B2KA46|ERA_YERPB RecName: Full=GTPase Era gi|226741408|sp|A9R403|ERA_YERPG RecName: Full=GTPase Era gi|226741409|sp|B1JRC8|ERA_YERPY RecName: Full=GTPase Era gi|21958063|gb|AAM84872.1|AE013732_4 GTP-binding protein [Yersinia pestis KIM 10] gi|45437169|gb|AAS62721.1| putative GTP-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|51590487|emb|CAH22127.1| putative GTP-binding protein [Yersinia pseudotuberculosis IP 32953] gi|108775018|gb|ABG17537.1| GTP-binding protein [Yersinia pestis Nepal516] gi|108780360|gb|ABG14418.1| putative GTP-binding protein [Yersinia pestis Antiqua] gi|115348402|emb|CAL21338.1| putative GTP-binding protein [Yersinia pestis CO92] gi|145210532|gb|ABP39939.1| GTP-binding protein [Yersinia pestis Pestoides F] gi|149291802|gb|EDM41876.1| putative GTP-binding protein [Yersinia pestis CA88-4125] gi|152960435|gb|ABS47896.1| GTP-binding protein Era [Yersinia pseudotuberculosis IP 31758] gi|162352538|gb|ABX86486.1| GTP-binding protein Era [Yersinia pestis Angola] gi|165922837|gb|EDR39988.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str. F1991016] gi|165992695|gb|EDR44996.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. E1979001] gi|166206530|gb|EDR51010.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. B42003004] gi|166960654|gb|EDR56675.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051249|gb|EDR62657.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057271|gb|EDR67017.1| GTP-binding protein Era [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749970|gb|ACA67488.1| GTP-binding protein Era [Yersinia pseudotuberculosis YPIII] gi|186699328|gb|ACC89957.1| GTP-binding protein Era [Yersinia pseudotuberculosis PB1/+] gi|229681549|gb|EEO77643.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis Nepal516] gi|229688394|gb|EEO80465.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis biovar Orientalis str. India 195] gi|229694648|gb|EEO84695.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701328|gb|EEO89356.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis Pestoides A] gi|262362498|gb|ACY59219.1| GTP-binding protein Era [Yersinia pestis D106004] gi|262366497|gb|ACY63054.1| GTP-binding protein Era [Yersinia pestis D182038] gi|270338313|gb|EFA49090.1| GTP-binding protein Era [Yersinia pestis KIM D27] gi|294354969|gb|ADE65310.1| GTP-binding protein Era [Yersinia pestis Z176003] gi|320016074|gb|ADV99645.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 303 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 155/289 (53%), Gaps = 13/289 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 10 GFIAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 69 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 K + ++LM R + S++ ++V VV+ + E+ VN ++ ++L Sbjct: 70 EEKRAINRLMNRAASSSLGDVELVIFVVEGTHWTADDEMVVN------KLRSLQCPVLLA 123 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D V + +LL + ++ + +SA KG D + + + +P A + Sbjct: 124 INKVDNVTDKTKLLPHMQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEAEHHFPE 183 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D +EI REKL L +E+PYS V E++ + G I +I VER Q Sbjct: 184 DYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNIHGLILVEREGQ 243 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 KK+++G G IK I EA++++ + E VHL L+VKV+ W D + Sbjct: 244 KKMVIGNKGSKIKVIGTEARQDMERMFEAKVHLELWVKVKSGWADDERA 292 >gi|258626728|ref|ZP_05721550.1| GTP-binding protein [Vibrio mimicus VM603] gi|258580984|gb|EEW05911.1| GTP-binding protein [Vibrio mimicus VM603] Length = 324 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 160/286 (55%), Gaps = 6/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ ++ Q +++DTPG+ Sbjct: 31 GFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHI 90 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S++ ++V VV+ + + ++ K + ++L +NK+D Sbjct: 91 EEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD 149 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 VK E +L E++ ++ F++ +SA +G D + ++ LP A + + ++ Sbjct: 150 QVKDRNEVMLHMLELSKRMQFVD-IVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYVT 208 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERPSQKKI 258 D +EI REKL +E+PYS V E+++ D I +I VER QKK+ Sbjct: 209 DRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERIGQKKM 268 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 269 VIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 314 >gi|315652502|ref|ZP_07905486.1| GTP-binding protein Era [Eubacterium saburreum DSM 3986] gi|315485218|gb|EFU75616.1| GTP-binding protein Era [Eubacterium saburreum DSM 3986] Length = 304 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/296 (33%), Positives = 166/296 (56%), Gaps = 14/296 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N +G K++I + K QTTR+ ++ + +++ QIVFLDTPGI Sbjct: 7 KSGFVALIGRPNVGKSTLMNTLIGQKIAITSSKPQTTRNRIQTVFTDERGQIVFLDTPGI 66 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ + M+++S T++ D+V +V+ + + + ++ +IL +NK+ Sbjct: 67 HKAKNKLGEYMVKVSTRTLRDVDLVLWLVEPGTFIGEGDEHIFEILSDVEVPVILAVNKV 126 Query: 141 DCVK-PERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D +K + +LE A+ ++K+ F + VSA KG D++L + L P Y D + Sbjct: 127 DSLKQKDDILEVIAKYSSKMNFAD-IVPVSALKGTNTDELLKVIFKYLSEGPMYYDEDTV 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D P+ +E+ REK L EIP+ V + W +K G ++ I + E+ S K Sbjct: 186 TDQPIKQIASELIREKALKFLQDEIPHGIAVEIDTWSYRKGGGMVDIEAAVVCEKDSHKG 245 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW----------GHDPK 303 I++GK G +K I A+K+I +LE V+L L+VKV+ W G++PK Sbjct: 246 IIIGKGGGMLKKIGSAARKDIENLLECKVNLKLWVKVRPKWRDSDVQMKNFGYNPK 301 >gi|167749633|ref|ZP_02421760.1| hypothetical protein EUBSIR_00591 [Eubacterium siraeum DSM 15702] gi|167657386|gb|EDS01516.1| hypothetical protein EUBSIR_00591 [Eubacterium siraeum DSM 15702] gi|291530788|emb|CBK96373.1| GTP-binding protein Era [Eubacterium siraeum 70/3] gi|291557707|emb|CBL34824.1| GTP-binding protein Era [Eubacterium siraeum V10Sc8a] Length = 302 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 168/286 (58%), Gaps = 5/286 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N +S VA+ G NAGKSTL N VG K++IV+ K QTTR+ + G++++ E+Q VF+DT Sbjct: 2 NNPKSVFVAIAGRPNAGKSTLTNYLVGEKIAIVSDKPQTTRTRINGVLTKGETQYVFIDT 61 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ AK+ M++ ++ D++ ++ D+ +++ H+L+ R + ++L++ Sbjct: 62 PGMHKAKNKLSDQMLKSIRESVTDVDVILMMADATKKISPIEHNLIDSFKDRKTDVVLLI 121 Query: 138 NKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D VK + LL + ++L ++ +S + G ++++ + + L+P + + Sbjct: 122 NKVDLVKDKSELLSLIKEYSELYDFKEIIPISVRQRIGVEEIMPVIDRYVKLSPHYFDDE 181 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGS--ILIRQVIYVER 252 +D + AEI REK+ ++++EIP+ + V E E +K +G + I VI E+ Sbjct: 182 LPTDQAEKVWLAEIVREKILRNMNEEIPHGTAVYVETMEVRQKPNGKEIVDIGIVIVCEK 241 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K +++GK G +K I EA++++ + V++ ++VKV++DW Sbjct: 242 ASHKGMIIGKQGSMLKKIGSEAREDMQDYFGCKVNMQIWVKVKEDW 287 >gi|237807624|ref|YP_002892064.1| GTP-binding protein Era [Tolumonas auensis DSM 9187] gi|237499885|gb|ACQ92478.1| GTP-binding protein Era [Tolumonas auensis DSM 9187] Length = 300 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 156/294 (53%), Gaps = 5/294 (1%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 ++ + G VA+VG N GKSTL+N+ +G KVSI + K QTTR + GI ++ Q +F Sbjct: 1 MTEEKTYCGFVAIVGRPNVGKSTLLNKLLGQKVSITSRKPQTTRHRILGIDTQGAYQTIF 60 Query: 75 LDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DTPG+ K + ++LM R + S++ ++V VVD + +L ++ + Sbjct: 61 VDTPGLHIEEKRAINRLMNRAATSSLGDVEMVVFVVDGTHWTD-DDEMVLNKLRHMHCPV 119 Query: 134 ILILNKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +L +NK+D +K + +L +A K F E +SA KG + + LP Sbjct: 120 VLAVNKVDVIKDKEILLPHLQMLAQKGNFAE-ILPISAEKGTNVEKIREMAKRLLPEGEH 178 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + D I+D +EI REKL +E+PYS V E+++ ++DG I +I VE Sbjct: 179 YFPEDYITDRSSRFMASEIIREKLMRFTGEELPYSVTVEIERFKVEEDGLFHINALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKK+++G G+ +K I EA+ ++ + Q V L L+VKV+ W D + Sbjct: 239 REGQKKMVIGNKGEKLKVIGTEARLDMERLFGQRVFLELWVKVKSGWADDERAL 292 >gi|218441386|ref|YP_002379715.1| GTP-binding protein Era [Cyanothece sp. PCC 7424] gi|218174114|gb|ACK72847.1| GTP-binding protein Era [Cyanothece sp. PCC 7424] Length = 318 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 107/285 (37%), Positives = 156/285 (54%), Gaps = 14/285 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKSTL+N+ VG K++I + QTTR+ ++GI++ E+QI+F+DTPGI Sbjct: 24 KSGFVAIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGILTTSEAQIIFVDTPGI 83 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 K++++ + I D+V LV DS E I DLL+E + +IL L Sbjct: 84 HKPHHELGKVLVKNAQMAINAVDLVLLVADSSIEAGGGDRYIIDLLEET---KTPVILGL 140 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK D +P E +L + MV SA G G D + + L L P+ Y Sbjct: 141 NKSDQ-QPANFDPLDESYRQLAQFHQWPMVKFSALTGSGLDLLQSLLVEHLDPGPYYYPP 199 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR--QVIYVERP 253 D ++D P E+ RE++ L +E+P+S VV E EE L R I VER Sbjct: 200 DLVTDQPERFIMGELIREQILLLTRQEVPHSVAVVVENVEETPK---LTRVFAAINVERN 256 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK I++GKNG +K I A++ I +++E V+L LFVKV+ W Sbjct: 257 SQKGIIIGKNGSMLKAIGSAARQAIQKLIEGEVYLNLFVKVEPKW 301 >gi|149923267|ref|ZP_01911677.1| GTP-binding protein [Plesiocystis pacifica SIR-1] gi|149815864|gb|EDM75384.1| GTP-binding protein [Plesiocystis pacifica SIR-1] Length = 360 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 157/303 (51%), Gaps = 18/303 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q RSG VAL G N GKSTL+N +G ++++ T QTTR + GI + Q V +D Sbjct: 25 QQAFRSGFVALCGRPNVGKSTLLNALLGEELAVATALPQTTRERMLGIWTSPRFQAVLVD 84 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV-NIHDLLKE---------- 125 TPGI K + +K M+ + + D++ ++ + R + + H L++E Sbjct: 85 TPGIHKPKSALNKYMVEEAVRGARDVDVILMLAEVPRVPRGKDGHALIQEWEPGPGAKAA 144 Query: 126 ---IAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +A ++L+L K D + ER LL + + VSA +G G + + Sbjct: 145 VELLAPLGKPMVLVLTKCDLLG-ERDWLLPIIQRWQAIHAFAGVVPVSAVQGRGLEALRE 203 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 + LP P Y+ DQ+SD M +E+ R +LF L +E+PYSS V +++E ++ Sbjct: 204 EVEGALPEGPAYYADDQLSDRSMRWHASELIRAELFERLGQELPYSSAVTIREFKELRER 263 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I I+VERPSQK I++G G++IK IS+ A+K I ++ + L L V+V W Sbjct: 264 D-RIEATIHVERPSQKGIVIGAKGKSIKAISIGARKRIEQLTGRRCELFLEVRVTAKWTK 322 Query: 301 DPK 303 DP+ Sbjct: 323 DPR 325 >gi|119713399|gb|ABL97461.1| GTP-binding protein Era [uncultured marine bacterium HF130_81H07] Length = 294 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 161/288 (55%), Gaps = 10/288 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N + G V+L G TN GKSTL+N K++I + K QTTR+ + GI S++++QIVFLD+P Sbjct: 2 NKKFGFVSLTGRTNVGKSTLLNSIFQKKIAITSRKPQTTRNRILGIFSDEKNQIVFLDSP 61 Query: 79 GIFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 G+ + + + +K M +++ + + D+V V+D R L+ ++LK + + +IL++ Sbjct: 62 GVHSGHRRALNKYMNKVARTCYEEVDLVIFVIDRGRWLREE-ENILKNLKELDKPIILVI 120 Query: 138 NKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID +K +L N E +SA + +D+L+ + +P + Y Sbjct: 121 NKIDRLKNRNGILPIMNDLNSKHNFEAIIPISALRKDNLEDLLSKVLEKIPSGEFHYPTI 180 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IYVERP 253 + + + +EI REK L E+PY V EK ++ K I+ + IYVE Sbjct: 181 EEKEFSQSFYISEIIREKAINRLGDELPYRINVEIEKIQDNK----FIKHIFSNIYVESS 236 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQK I+LGKNG IK+I ++KE+ + + ++L L V+V+K+W +D Sbjct: 237 SQKAILLGKNGSMIKSIGTSSRKELEKEFDFKINLQLRVRVKKNWTND 284 >gi|325577736|ref|ZP_08148011.1| GTP-binding protein Era [Haemophilus parainfluenzae ATCC 33392] gi|325160481|gb|EGC72607.1| GTP-binding protein Era [Haemophilus parainfluenzae ATCC 33392] Length = 304 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 155/286 (54%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 13 GFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGIYQEIYVDTPGLHI 72 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S I D++ VVD + +L ++ + ++L +NK+D Sbjct: 73 EEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVD 131 Query: 142 CVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +K + L ++ +K F +SA +G+ + + +L + D ++ Sbjct: 132 NIKNKDDLLPFITDLGSKFNFAH-IVPISAQRGNNVHQLEKIVRQSLRKGVHHFPEDYVT 190 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL +E+PYS V E+++ + G+ I +I VER QKK++ Sbjct: 191 DRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVEREGQKKMV 250 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 251 IGAQGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 296 >gi|269122927|ref|YP_003305504.1| GTP-binding protein Era [Streptobacillus moniliformis DSM 12112] gi|268314253|gb|ACZ00627.1| GTP-binding protein Era [Streptobacillus moniliformis DSM 12112] Length = 299 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 150/291 (51%), Gaps = 8/291 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +++VG N GKSTL+N+ + KV+IV+ K TTR +RGIV++ E+Q +F+DTPGI Sbjct: 2 KSGFISIVGRPNTGKSTLINKLIDEKVAIVSDKAGTTRDQIRGIVNKGENQYIFIDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M L+ ++ D++ ++D +E+ + + I + +I+NKI Sbjct: 62 HKPKHLLGEYMTNLAIESLNECDLILFLLDGTKEIGTGDIFVNENIRNSKTPTYVIINKI 121 Query: 141 DCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + E L + EI KL E +SA G G + L W Y D + Sbjct: 122 DKMSDEELNNKVEEIREKLGEFEGIITMSAAYGIGIHKIFEVCEKYLSNDIWFYPEDYYT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYS---SCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 D+ + E REK+ EIP+S + E K+ I IYVER SQK Sbjct: 182 DISVNKIVIETIREKILQKTKDEIPHSVALEIINIESGNNKRRYDI----NIYVERDSQK 237 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 I++G G+ +K I +EA++EI + + ++L L+VKV K W + K + Sbjct: 238 GIIIGNGGKLLKEIGIEARREIEALTDLKINLKLWVKVSKKWRKNEKMLNE 288 >gi|84390105|ref|ZP_00991367.1| GTP-binding protein Era [Vibrio splendidus 12B01] gi|86146358|ref|ZP_01064682.1| GTP-binding protein Era [Vibrio sp. MED222] gi|218710568|ref|YP_002418189.1| GTP-binding protein Era [Vibrio splendidus LGP32] gi|84376759|gb|EAP93634.1| GTP-binding protein Era [Vibrio splendidus 12B01] gi|85835837|gb|EAQ53971.1| GTP-binding protein Era [Vibrio sp. MED222] gi|218323587|emb|CAV19827.1| GTP-binding protein era homolog [Vibrio splendidus LGP32] Length = 323 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 163/291 (56%), Gaps = 6/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G +A+VG N GKSTL+N +G K+SI + K QTTR + G+ +E + Q +++DT Sbjct: 25 ENQHCGFIAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVETEGDYQAIYVDT 84 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + +L ++ K ++L Sbjct: 85 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDG-THWTDDDEMVLNKLRKTDFPVVLC 143 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V+ + Q E++ K+ F++ +SA +G D + ++ ++LP A + Sbjct: 144 INKVDNVQDRTDVMQHMMEVSKKMDFLD-VVPISAKQGKNIDVLRKHVRNSLPKATHHFP 202 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ D I +I VER Sbjct: 203 EEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIERFDYNPDNDGFHINALILVERT 262 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 263 GQKKMVIGKAGEKIKTIGREARIDMEELFGRKVYLETWVKVKSGWADDERA 313 >gi|329934648|ref|ZP_08284689.1| GTP-binding protein Era [Streptomyces griseoaurantiacus M045] gi|329305470|gb|EGG49326.1| GTP-binding protein Era [Streptomyces griseoaurantiacus M045] Length = 317 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/298 (33%), Positives = 161/298 (54%), Gaps = 19/298 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV E+Q++ +DTPG+ Sbjct: 17 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPGL 76 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLIL 135 + + + +R +W+ + D++ + + ++L + KE+A KR+ + + Sbjct: 77 HKPRTLLGERLNDVVRATWAEV---DVIGFCLPADQKLGPGDRFIAKELAGIKRTPK-VA 132 Query: 136 ILNKIDCVKPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 I+ K D V + L EQ ++L + + VSAT G D + + L LP P Sbjct: 133 IVTKTDLVDSKALAEQLIAIDQLGRELGITWAEIVPVSATAGQQVDLLADLLIPLLPEGP 192 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIR 245 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 193 ALYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIH 252 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++ERPSQK I++G G+ +K + ++++K+I +L PV L L VKV KDW DPK Sbjct: 253 ANVFIERPSQKGIIIGPKGKRLKDVGIKSRKQIEALLGTPVFLDLHVKVAKDWQRDPK 310 >gi|289642689|ref|ZP_06474829.1| GTP-binding protein Era [Frankia symbiont of Datisca glomerata] gi|289507519|gb|EFD28478.1| GTP-binding protein Era [Frankia symbiont of Datisca glomerata] Length = 309 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 146/291 (50%), Gaps = 8/291 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG+KV+I + + QTTR VRGIV ++Q+V +DTPG+ Sbjct: 12 RSGFACFVGRPNAGKSTLTNALVGSKVAITSGRPQTTRHAVRGIVHRDDAQLVLVDTPGL 71 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 + + + + +T+ D+V V ++ + + E+A+ R L+ ++ Sbjct: 72 HRPRTLLGQRLNDVVRATLSEVDVVAFCVPANEAVGPGDRFIAGELARLPKRTPLVAVVT 131 Query: 139 KIDCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V L +A L VSA + + L S LP P +Y + Sbjct: 132 KSDLVSDRDALGAQLLAVCSLADFVDVVPVSAVSSFQVGLLADVLVSRLPPGPPLYPDGE 191 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSILIRQV-IYVER 252 ++D P AE+ RE + E+P+S VV E + + D +L V +YVER Sbjct: 192 LTDEPEQVMVAELVREAALEGVRDELPHSLAVVVEEMIPREDRPADRPLLDVHVNVYVER 251 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++G G +K + A+ +I +L PV+L L VKV KDW DP+ Sbjct: 252 QSQKAIVIGAKGARLKDVGTRARGQIEALLGTPVYLDLHVKVAKDWQRDPR 302 >gi|330999189|ref|ZP_08322908.1| ribosome biogenesis GTPase Era [Parasutterella excrementihominis YIT 11859] gi|329575389|gb|EGG56933.1| ribosome biogenesis GTPase Era [Parasutterella excrementihominis YIT 11859] Length = 303 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 8/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL+N VG KVSI + K QTTR + G+++ +Q +F+DTPG Sbjct: 14 RSGYVAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTDNAQYLFVDTPG- 72 Query: 81 FNAKDSYHKLMIRLSW---STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 F K S +L+ R++ S++ D V +V+++ + +L ++K + +IL + Sbjct: 73 FQTKHS-SELLARMNQSVRSSLSDVDAVVMVIEAT-GWRPEDQVVLNLLSKDAKNVILAI 130 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D VK E +L + A + VSA K D +L+ + LP +Y D Sbjct: 131 NKTDEVKESEAMLPLIKEAMEKFPFADVVPVSAEKTRQLDVLLDVIRKYLPEGDKLYEDD 190 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 +D AEI REK F L E+PY V+ +KWEE D + I + V R S K Sbjct: 191 IYTDKSPRFLAAEIIREKAFRLLGDELPYGVAVMIDKWEETDDQA-RIFATLLVNRESHK 249 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++G+ G ++ IS A+++I+++L + V+L ++V+V+K WG D + Sbjct: 250 GIVIGEKGAKLREISRLAREDISKMLGKNVYLEVWVRVRKGWGDDAQVL 298 >gi|33152641|ref|NP_873994.1| GTP-binding protein Era [Haemophilus ducreyi 35000HP] gi|71151872|sp|Q7VL76|ERA_HAEDU RecName: Full=GTPase Era gi|33148865|gb|AAP96383.1| GTP-binding protein era-like protein [Haemophilus ducreyi 35000HP] Length = 304 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 157/286 (54%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E++ Q +++DTPG+ Sbjct: 13 GFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIQTEEQYQAIYVDTPGLHI 72 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S I D++ VV+ + + +L ++ + ++L +NK+D Sbjct: 73 EEKRAINRLMNRAASSAIGDVDLIIFVVEGTKWTDDD-EMVLNKLRTAKAPVVLAINKVD 131 Query: 142 CVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +K E L ++ K F E +SA +G + + +L + + ++ Sbjct: 132 NIKEKDELLPHITALSQKFDFAE-ILPISAQRGKNVHILQKIVRKSLREGVHHFPEEYVT 190 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL +E+PYS V E+++ + G+ I +I VER QKK++ Sbjct: 191 DRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNERGTYEINGLILVEREGQKKMV 250 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 251 IGAKGQKIKTIGIEARADMERLFDNKVHLELWVKVKAGWADDERAL 296 >gi|256372048|ref|YP_003109872.1| GTP-binding protein Era [Acidimicrobium ferrooxidans DSM 10331] gi|317374861|sp|C7LZP1|ERA_ACIFD RecName: Full=GTPase Era gi|256008632|gb|ACU54199.1| GTP-binding protein Era [Acidimicrobium ferrooxidans DSM 10331] Length = 287 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 149/283 (52%), Gaps = 23/283 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G TN GKS+LVN G + +IV+ TTR VR I ++++V +DTPGI Sbjct: 11 RSGFVAVIGRTNVGKSSLVNALAGERATIVSRHPNTTRRSVRVISRVGDAELVLVDTPGI 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL----ILI 136 A D + R AD LVVD+ R + +L +SRL + + Sbjct: 71 AAAHDELSARLRRWVDDEWDGADRALLVVDAERGVGAREREL-------ASRLKPSDVAV 123 Query: 137 LNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 + +ID V+ R L AE+A V + + F+ S G G +++ +YL S+LP P +Y A Sbjct: 124 VARIDRVRRARTLAVLAELAQ--VPLAEYFVASVRTGEGIEELRSYLASSLPEGPALYEA 181 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DLP + AE+ RE+ HL E+P + E W + DG + V+YVERPSQ Sbjct: 182 GVALDLPRATYVAEVVREEFLHHLRDELPQALACQVESWSD--DG---VEVVVYVERPSQ 236 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + I+LG G+ + + +A++ + L L VKVQ+DW Sbjct: 237 RAIVLGHEGRVLAAVRRQAQRRLRAY----PPLTLRVKVQRDW 275 >gi|301154740|emb|CBW14203.1| membrane-associated, 16S rRNA-binding GTPase [Haemophilus parainfluenzae T3T1] Length = 304 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 155/286 (54%), Gaps = 5/286 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 13 GFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGIYQEIYVDTPGLHI 72 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S I D++ VVD + +L ++ + ++L +NK+D Sbjct: 73 EEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVD 131 Query: 142 CVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +K + L ++ +K F +SA +G+ + + +L + D ++ Sbjct: 132 NIKNKDDLLPFITDLGSKFDFAH-IVPISAQRGNNVHQLEKIVRQSLRKGVHHFPEDYVT 190 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL +E+PYS V E+++ + G+ I +I VER QKK++ Sbjct: 191 DRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVEREGQKKMV 250 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 251 IGAQGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 296 >gi|256832767|ref|YP_003161494.1| GTP-binding protein Era [Jonesia denitrificans DSM 20603] gi|256686298|gb|ACV09191.1| GTP-binding protein Era [Jonesia denitrificans DSM 20603] Length = 314 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 99/298 (33%), Positives = 158/298 (53%), Gaps = 16/298 (5%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + RSG LVG NAGKSTL N VG K++I +K QTTR +RGIV+ +++Q++ +DT Sbjct: 14 EGHRSGFACLVGRPNAGKSTLTNALVGQKIAITANKPQTTRHTIRGIVNREDAQLILVDT 73 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----- 132 PG+ + + + L ST+ D+V + + +++ + +++A+ + R Sbjct: 74 PGLHRPRTLLGERLNDLVLSTLSEVDVVVFCLPADQKIGPGDRFIAEQLARLNERRTKTP 133 Query: 133 LILILNKIDCVKPE----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +I + K D V + LLE AE+A+ VSA +G + + + L S LP Sbjct: 134 IIAAVTKADVVSRDALASHLLEVAELAD----FSDIIPVSAVEGFQVEALTDLLVSHLPE 189 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYS-SCVVTEKWEEKKDGS--ILIR 245 Y +++D P AE+ RE + E+P+S + VV E E+ K G + + Sbjct: 190 GVKFYLDGELTDEPESVMIAELIREAAIEGVRDELPHSLAVVVDEIIEKDKQGRPHLTVH 249 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I+VER SQK I++GK G ++ + +A+ I +L V+L L VKV KDW DPK Sbjct: 250 ASIFVERDSQKGIIIGKQGSRLRKVGSQARVGIEALLGAHVYLDLRVKVAKDWQRDPK 307 >gi|326794406|ref|YP_004312226.1| GTP-binding protein Era-like-protein [Marinomonas mediterranea MMB-1] gi|326545170|gb|ADZ90390.1| GTP-binding protein Era-like-protein [Marinomonas mediterranea MMB-1] Length = 339 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/299 (31%), Positives = 165/299 (55%), Gaps = 11/299 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 + +D+ Q+ + G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ +E Sbjct: 38 QEEDY-QEITHCGFVAIVGRPNVGKSTLMNHILGQKLSITSRKPQTTRDQILGVKTEGSI 96 Query: 71 QIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 Q +++DTPG+ + + ++ M + + + +K D+V V+D+ R + +L+++ Sbjct: 97 QTIYVDTPGLHLGQQKAINRFMNKTATAALKDVDVVLFVIDAERWTDED-ESVLQKVQYA 155 Query: 130 SSRLILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++L++NK+D + K E L + A ++ K+ F + +SA + D + N + S +P Sbjct: 156 QCPVVLVVNKVDNLDEKDELLPKLAALSEKMEFA-QIVPISALRNKNLDRLENLVESYIP 214 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--WEEKKDGSILIR 245 Y DQI++ AEI REK+ L +E+PY V E+ +EE +I I Sbjct: 215 EGTQYYPEDQITNRSSRFLAAEIVREKITRQLGQEVPYEVAVQIEEFVYEEN---AIHIS 271 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +I VER QK+I++G G+ IK I EA+ ++ + + V L +VKV+ W D + Sbjct: 272 ALILVERNGQKRILIGDKGEKIKLIGREARIDMENLFQHKVMLNTWVKVRSGWSDDERA 330 >gi|322514173|ref|ZP_08067238.1| GTP-binding protein Era [Actinobacillus ureae ATCC 25976] gi|322119959|gb|EFX91961.1| GTP-binding protein Era [Actinobacillus ureae ATCC 25976] Length = 304 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 9/293 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E + Q +++D Sbjct: 7 QPKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVD 66 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRL 133 TPG+ K + ++LM R + S I D++ VV+ K D +L ++ + + Sbjct: 67 TPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVEG---TKCTDDDEMVLNKLRAAKAPV 123 Query: 134 ILILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +L +NK+D +K E L E++ K F E +SA G + + +L Sbjct: 124 VLAINKVDNIKEKDELLPHITELSQKFDFAE-ILPISAQSGKNVHILQKIVRKSLREGVH 182 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + + ++D +EI REKL +E+PYS V E+++ + G+ I +I VE Sbjct: 183 HFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKLNERGTYEINGLILVE 242 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 R QKK+++G GQ IKTI EA+ ++ + + VHL L+VKV+ W D + Sbjct: 243 REGQKKMVIGAKGQKIKTIGTEARADMERLFDNKVHLELWVKVKAGWADDERA 295 >gi|221135074|ref|ZP_03561377.1| GTP-binding protein Era [Glaciecola sp. HTCC2999] Length = 303 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 157/288 (54%), Gaps = 3/288 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+ G +A+VG N GKST++NR +G KVSI + K QTTR + GI SE + Q +++DTP Sbjct: 8 NTFCGMIAIVGRPNVGKSTILNRLIGQKVSITSRKPQTTRHRIMGIDSEGDKQAIYVDTP 67 Query: 79 GIFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 G+ + K + ++ M R + S++ +V VV+ R + +L++I I+ Sbjct: 68 GLHSEEKRAINRYMNRAASSSLGEVSLVLFVVEGTR-FTADDAMVLEKIKASGIECWAIV 126 Query: 138 NKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D V+ ++LL ++ VSA G ++ + + + LP + + Y + Sbjct: 127 NKSDNVEDKQQLLAHLTWLDEQHDFAHVMPVSAKLGRYLPELRDMVMAQLPQSEFYYPEE 186 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D AEI REKL + E+PYS V E+++ G I +I VER +QK Sbjct: 187 YVTDRSSRFMAAEIIREKLMRYTGDELPYSVTVEIEQFKMTDKGIYRINGLILVERETQK 246 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ++++GK G ++KTI +A+K++ + + V L L+VKV+ W D + Sbjct: 247 RMIIGKQGSHLKTIGSDARKDLENLFDNKVFLELWVKVKSGWADDERA 294 >gi|197285742|ref|YP_002151614.1| GTP-binding protein Era [Proteus mirabilis HI4320] gi|227356256|ref|ZP_03840645.1| GTP-binding protein [Proteus mirabilis ATCC 29906] gi|194683229|emb|CAR43911.1| GTP-binding protein [Proteus mirabilis HI4320] gi|227163720|gb|EEI48636.1| GTP-binding protein [Proteus mirabilis ATCC 29906] Length = 302 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 158/291 (54%), Gaps = 5/291 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI ++ Q +++D Sbjct: 3 EEQTYCGFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM R + S+I ++V VV+ + +L ++ ++L Sbjct: 63 TPGLHIEEKRAINRLMNRAASSSIGDVELVIFVVEG-TNWTPDDEMVLNKLKSLRCPVLL 121 Query: 136 ILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +NK+D V K + L ++ ++ F++ +SA KG D + + + LP A + Sbjct: 122 AINKVDNVTDKTKLLPHIGFLSQQMDFLD-VVPISAEKGMNVDTIAKIVRNCLPEAIHHF 180 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D I+D +EI REKL L +E+PYS V E++ G I +I VER Sbjct: 181 PEDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIEQFVTNDRGGYDIHGLILVERE 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G IK I EA+ ++ ++ E VHL L+VKV+ W D + Sbjct: 241 GQKKMVIGNKGAKIKKIGTEARMDMEDLFENKVHLELWVKVKAGWADDERA 291 >gi|291544277|emb|CBL17386.1| GTP-binding protein Era [Ruminococcus sp. 18P13] Length = 297 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 157/285 (55%), Gaps = 12/285 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +S V + G TNAGKS+L+N VG K++ V++K QTTR+ + GI + ++Q+VF+DTPG+ Sbjct: 3 KSAFVTIAGRTNAGKSSLLNALVGEKIASVSNKPQTTRTRITGIKTIGDTQLVFMDTPGL 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ + M+ ++ D++ ++D R++ +L + +R +I+ILNKI Sbjct: 63 HKPKNKLSEHMLNTVTESVVDIDLLLFMMDCTRQMTPQEEAMLLDCKRRKRPVIVILNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D ++ ++ +A +V I+ F +S T+ G D V + S +P + Sbjct: 123 DLLE-----DKTRLAGMMVGIQSRFDPASIIPISVTEQDGVDLVEQEVLSHAKESPHFFP 177 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 + +D P AE+ RE+L L E+P+ V+TE E+++ IL I VIY ER Sbjct: 178 DEMFTDQPEKVIAAEMVREQLLRMLDDEVPHGIAVMTESMTEREEQDILDISVVIYCERE 237 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GK G +K ++ A+ + + V+L +VKV++DW Sbjct: 238 SHKGIVIGKKGAMLKRVASAARTSLEDFFRIKVNLQCWVKVKEDW 282 >gi|237746715|ref|ZP_04577195.1| GTP-binding protein Era [Oxalobacter formigenes HOxBLS] gi|229378066|gb|EEO28157.1| GTP-binding protein Era [Oxalobacter formigenes HOxBLS] Length = 299 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 160/286 (55%), Gaps = 11/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N +GAKVSI + K QTTR + GI ++ ++Q +++DTPG Sbjct: 10 RCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRIMGIQTDDDAQFIYIDTPG- 68 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDS--HRELKVNIHDLLKEIAKRSSRLILI 136 F + ++ +K + R T+ AD++ VVD+ + + + DL+ E + IL+ Sbjct: 69 FQTRYNNALNKNLNRTVRDTLSTADVILFVVDAGVYGQADQQVLDLIPE----NVPTILV 124 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK D VK + L+ AE L VSA + + + + LP P +S Sbjct: 125 VNKTDKVKEKAELIPFAEKLAALRDFAAIVPVSARQRFQLNRLEEEIRHLLPENPPFFSP 184 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D AEI REK+F + E+PY+S VV E++ E+K+ + + VER + Sbjct: 185 DDVTDRSERFMAAEIIREKIFRYTGDELPYTSTVVIEQF-ERKEKICRVFAAVLVEREAH 243 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K +++G G+ +K IS EA+ ++ ++ PV+L ++VKV+ W + Sbjct: 244 KAMIIGHKGEKLKEISTEARLDMEKMFGVPVYLEIWVKVKSGWADN 289 >gi|319941433|ref|ZP_08015761.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Sutterella wadsworthensis 3_1_45B] gi|319805053|gb|EFW01883.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Sutterella wadsworthensis 3_1_45B] Length = 360 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 156/296 (52%), Gaps = 9/296 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + R G VA+VG N GKSTL+N VG KVSI + K QTTR+ V G+++ ++Q +F+ Sbjct: 60 VPEGFRCGYVAVVGRPNVGKSTLINAIVGEKVSITSKKPQTTRNRVLGVLTTDQAQFIFV 119 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DTPG K+ + M R ST+ D V +V++S+ K ++L+ + +S +I Sbjct: 120 DTPGFQTKVKNQLTRRMNRSVRSTLSEVDAVVMVIESN-GWKPGDLEVLRLLPTEASNVI 178 Query: 135 LILNKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L ++K D K L A+ + F VSA K DD+L + LP + Sbjct: 179 LAVSKTDLSKDRNALLPLMADSMRRYPFA-AIVPVSAEKHRQLDDLLREIEKLLPESIPY 237 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR----QVI 248 + D +D AE REK F L E+PY + V +KW+E+ D + R + Sbjct: 238 FDPDLYTDKSPRFLAAETIREKAFRLLGDELPYGTAVTIDKWKEETDDKGVRRADIVATL 297 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 V+R S K I++G+ G ++ IS A+ +I E L PVHL ++V+V++ W D K Sbjct: 298 IVDRESHKPIVIGEKGAKLREISRLARADIEEQLGCPVHLEVWVRVRRGWSDDVKA 353 >gi|224825224|ref|ZP_03698330.1| GTP-binding protein Era [Lutiella nitroferrum 2002] gi|224602895|gb|EEG09072.1| GTP-binding protein Era [Lutiella nitroferrum 2002] Length = 296 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 160/282 (56%), Gaps = 7/282 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VG N GKSTL+N +G KVSI + K QTTR V GI +E +Q VF+DTPG Sbjct: 9 GFVAIVGRPNVGKSTLMNHLIGQKVSITSKKAQTTRHRVNGIHTEDTAQFVFVDTPGFQT 68 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++++ R T+ D V V+++ R + +LL + K + ++L++NK+D Sbjct: 69 FHKGALNEVLNRSVKETLSDVDCVLFVIEAMRWTGAD-KELLPLLPKHTP-VMLVINKLD 126 Query: 142 CVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 K ++ L+E E +VSA G ++L+ + LP + +Y D ++D Sbjct: 127 KAKDKQALMEFIETVKADFAFADVEVVSAKHGQRLAELLDKVRPRLPESMPLYPEDMVTD 186 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQKKIM 259 AEI REKLF +L +E+PYS V E++E DG++ I + V++ QK I+ Sbjct: 187 KSERFLAAEIVREKLFRYLGEELPYSMNVEVEQFE--LDGALRRIHIAVLVDKEGQKGIL 244 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +GK G+ +K IS EA+ ++ ++ + V+L ++VKV+ W D Sbjct: 245 IGKGGEKLKKISTEARLDMEKLFDGKVYLEVWVKVKSGWADD 286 >gi|92113756|ref|YP_573684.1| GTP-binding protein Era [Chromohalobacter salexigens DSM 3043] gi|91796846|gb|ABE58985.1| GTP-binding protein Era [Chromohalobacter salexigens DSM 3043] Length = 299 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 154/287 (53%), Gaps = 7/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VG N GKSTL+NR +G K+SI + + QTTR V GI +E E+Q +++DTPG+ Sbjct: 6 GFVAIVGRPNVGKSTLMNRILGQKISITSRRPQTTRHQVMGIKTEGETQFIYVDTPGMHI 65 Query: 83 AKDSYHKLMIRLSWSTIKHA--DIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNK 139 +K + R HA DI C++ R D +L+++ + + +IL +NK Sbjct: 66 QTRDRNKAINRFMNQAATHALRDIDCVIFIVDRTKWTAEDDVVLEKLGQVPAPVILAVNK 125 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D ++ + LL + ++ +SA G ++ + LP + + DQI Sbjct: 126 VDWLEDKSSLLPWLDSISRKREFAAVVPISAKHGTNVPELEAEIAQRLPESVHYFPEDQI 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D AE+ REK+ L E+PY V E++ K DG L I +I VERP QKK Sbjct: 186 TDKSQRFLAAELVREKVMRQLGDELPYQMTVEIEEF--KDDGKTLHISALIMVERPGQKK 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I++G+ G+ IK+I EA+ E+ + V L L+VKV++ W D + Sbjct: 244 ILIGERGERIKSIGREARLEMERAFDAKVMLNLWVKVKRGWSDDDRA 290 >gi|159903869|ref|YP_001551213.1| GTP-binding protein Era-like protein [Prochlorococcus marinus str. MIT 9211] gi|159889045|gb|ABX09259.1| GTP-binding protein ERA-like protein [Prochlorococcus marinus str. MIT 9211] Length = 314 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 157/293 (53%), Gaps = 12/293 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VAL+G N GKSTLVN VG KVSI + QTTR+ +R I++ + +Q+VF+DTPGI Sbjct: 12 RSGFVALIGRPNVGKSTLVNELVGQKVSITSPVAQTTRNRLRAILTTQNAQLVFVDTPGI 71 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + +++ + +I D + L+ + + ++ + + ++++LNK Sbjct: 72 HKPHHLLGQRLVQSARRSIGEVDTILLIFEGCHPPGKGDYFVVNLLREEERPVLIVLNKW 131 Query: 141 DCVKPERLLEQAEIANKLVFIE---KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + E+ +Q E K +F E F SAT G G + ++ + LP+ P ++ + Sbjct: 132 DLLPLEK-SKQRENEYKDLFRELDWPIFCCSATHGTGLEGLIEEISRNLPIGPRLFPPEM 190 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE------KKDGSI--LIRQVIY 249 +SD E+ RE++ LH +EIP+S V ++ EE KK ++ I I Sbjct: 191 VSDQSEQTIFRELIREQVLLHTREEIPHSVAVRIDRLEEILPKPGKKSQNVHTAILATIL 250 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 VER SQK I++GK G +K I A+ ++ + V+L LFVKV +W +P Sbjct: 251 VERKSQKGILIGKGGSMLKQIGQAARLQMQVFINGSVYLELFVKVVPNWRSNP 303 >gi|301100808|ref|XP_002899493.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262103801|gb|EEY61853.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 877 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 103/309 (33%), Positives = 166/309 (53%), Gaps = 31/309 (10%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++ +A++G NAGKS+++NR + VS V+ K TTR + GI +E + Q+ F DTP Sbjct: 216 NPKALDLAVIGRPNAGKSSIMNRLLSVTVSAVSPKYNTTRDRILGIFTEGDVQLSFYDTP 275 Query: 79 GIFNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL--- 133 G+ K+S Y + ++ + T++ D+ LVVDS + L + L+++ S+++ Sbjct: 276 GLIKPKESHEYVQTLVTAAAETLQGVDLSMLVVDSVKRLDESALQALEKVLTTSAQVCSP 335 Query: 134 -ILILNKIDCV-KPERL--------LEQ--AEIANK-------------LVFI-EKTFMV 167 +L++NK D V K E+L L Q EI +K L +I + + V Sbjct: 336 TMLVMNKYDLVGKREQLNLDMKTKELSQMIEEIYSKHYDAEGSSLSIDPLAYIGDNSIKV 395 Query: 168 SATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSS 227 SATKG+G D + L S PW Y + SD+ EI REKLF ++E+PYS Sbjct: 396 SATKGYGMDTLRKTLLSLAVDRPWSYHSSMHSDMSDLDLVTEIIREKLFRRFNEELPYSF 455 Query: 228 CVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVH 287 W + D SI I Q I+V P +K+++G NG I+++ + A+ EI +L++ VH Sbjct: 456 EQENVGWTKFTDKSIRIDQDIFVPAPRVRKMVVGHNGDTIRSVGMAARDEIEVLLKRRVH 515 Query: 288 LILFVKVQK 296 L L V+ ++ Sbjct: 516 LYLNVRKKR 524 >gi|298736228|ref|YP_003728754.1| GTP-binding protein Era [Helicobacter pylori B8] gi|298355418|emb|CBI66290.1| GTP-binding protein Era [Helicobacter pylori B8] Length = 301 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 161/292 (55%), Gaps = 15/292 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLRHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLNLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L LNKID +++L++ + K F++ +SA K + +L + L + W+ Sbjct: 119 LALNKIDTATHKQVLQKLQEYQKYASQFVD-LVPLSAKKSQNLNALLECISKHLSPSAWL 177 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVE 251 + D +SD M EI RE LF L EIPY S V+ +K+ EE++ + R I VE Sbjct: 178 FEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERMDKVYAR--IIVE 235 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 + SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 236 KESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|325127805|gb|EGC50713.1| GTP-binding protein Era [Neisseria meningitidis N1568] Length = 307 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 159/290 (54%), Gaps = 11/290 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 14 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDT 73 Query: 78 PGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 PG D + L RL+ + + D V VV++ R + +LK++ K + +I Sbjct: 74 PGF--QTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDAD-RVVLKQLPKHTP-VI 129 Query: 135 LILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 L++NKID K +R + +A VSA G ++L + LP + Sbjct: 130 LVVNKIDKDKAKDRYALETFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVP 189 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V+ Sbjct: 190 MYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVD 248 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 249 KESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 298 >gi|71907658|ref|YP_285245.1| GTP-binding protein Era [Dechloromonas aromatica RCB] gi|71847279|gb|AAZ46775.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Dechloromonas aromatica RCB] Length = 294 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 163/293 (55%), Gaps = 17/293 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A+VG N GKSTL+NR VG K+SIV+ K QTTR + GI++ ++Q VF+DTPG Sbjct: 5 RSGYIAIVGRPNVGKSTLLNRLVGEKISIVSRKAQTTRHRITGILTNDDAQFVFVDTPG- 63 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILIL 137 F K ++ ++ M R T+ D+V ++++ R + D + + + +IL++ Sbjct: 64 FQTKFSNALNRAMNRGVTQTLNDVDVVLFLIEAGR---YDAKDKAVVRLLPKDRPVILVV 120 Query: 138 NKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK D +K L AE++ + +SA KG D++L LP ++ Sbjct: 121 NKTDQIKDRSSLFPFLAEVSADHDYA-AVVPISAAKGKQTDELLAEARKHLPNEGLMFPE 179 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IYVER 252 D+++D +E REK+F L E+PY++ V EK+E + D +R++ I V+R Sbjct: 180 DELTDKSERFLASEYIREKVFRLLGDELPYATAVEIEKFEVEGD----LRRIFAAIVVDR 235 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++GK G+++K I+ EA++++ + V+L ++VKV+ W D + Sbjct: 236 EGHKAIVIGKGGESLKRIASEARQDMERLFGSKVYLEIWVKVKSGWNDDERLL 288 >gi|269213653|ref|ZP_05982481.2| GTP-binding protein Era [Neisseria cinerea ATCC 14685] gi|269145766|gb|EEZ72184.1| GTP-binding protein Era [Neisseria cinerea ATCC 14685] Length = 311 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 159/290 (54%), Gaps = 11/290 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 18 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNPVTGIYTDDTAQFVFVDT 77 Query: 78 PGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 PG D + L RL+ + + D V VV++ R + +LK++ K + +I Sbjct: 78 PGF--QTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDAD-RVVLKQLPKHTP-VI 133 Query: 135 LILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 L++NKID K +R +A + VSA G ++L + LP + Sbjct: 134 LVVNKIDKDKAKDRYALEAFVVQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVP 193 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V+ Sbjct: 194 MYPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVD 252 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 253 KESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 302 >gi|1228147|gb|AAA92441.1| Era [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 301 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 152/287 (52%), Gaps = 5/287 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + +E Q +++DT Sbjct: 4 DKTYCGFIAIVGRPNVGKSTLLNKLLGRKISITSRKAQTTRHALSVCHTEDPYQAIYVDT 63 Query: 78 PGIF--NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 PG+ + + ++LM + + S+I ++V V + + +L ++ + +IL Sbjct: 64 PGLHMEEKRLAINRLMNKAASSSIGDVELVIFVEGTR--WTPDDEMVLNKLRDGKAPVIL 121 Query: 136 ILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V+ + LL + + +SA G D + + LP A + Sbjct: 122 AVNKVDNVQEKVDLLPHLQFLASQMNFPDIVPISAETGMNVDTIAGIVRKHLPEAIHHFP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D I+D +EI REKL L E+PYS V E++ + G I +I VER Sbjct: 182 EDYITDRSQRFMASEIIREKLMRFLRAELPYSVTVEIERFVTNERGGYDINGLILVEREG 241 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D Sbjct: 242 QKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADD 288 >gi|303257000|ref|ZP_07343014.1| GTP-binding protein Era [Burkholderiales bacterium 1_1_47] gi|302860491|gb|EFL83568.1| GTP-binding protein Era [Burkholderiales bacterium 1_1_47] Length = 303 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 161/290 (55%), Gaps = 10/290 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL+N VG KVSI + K QTTR + G+++ +Q +F+DTPG Sbjct: 14 RSGYVAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTDNAQYLFVDTPG- 72 Query: 81 FNAKDSYHKLMIRLSW---STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 F K S +L+ R++ S++ D V +V+++ + +L ++K + +IL + Sbjct: 73 FQTKHS-SELLARMNQSVRSSLSDVDAVVMVIEAT-GWRPEDQVVLNLLSKDAKNVILAI 130 Query: 138 NKIDCVK-PERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK D VK E +L E K F + VSA K D +L+ + LP +Y Sbjct: 131 NKTDEVKESEAMLPLIKESMEKFPFAD-VVPVSAEKTRQLDVLLDVIRKYLPEGDKLYED 189 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D +D AEI REK F L E+PY V+ +KWEE D + I + V R S Sbjct: 190 DIYTDKSPRFLAAEIIREKAFRLLGDELPYGVAVMIDKWEETDDQA-RIFATLLVNRESH 248 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++G+ G ++ IS A+++I+++L + V+L ++V+V+K WG D + Sbjct: 249 KGIVIGEKGAKLREISRLAREDISKMLGKNVYLEVWVRVRKGWGDDAQVL 298 >gi|254411028|ref|ZP_05024806.1| GTP-binding protein Era [Microcoleus chthonoplastes PCC 7420] gi|196182383|gb|EDX77369.1| GTP-binding protein Era [Microcoleus chthonoplastes PCC 7420] Length = 318 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 154/280 (55%), Gaps = 5/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N VG K++I + QTTR+ ++GI++ +Q++F+DTPGI Sbjct: 26 KSGFVGIIGRPNVGKSTLMNELVGQKIAITSPVAQTTRNRLQGILTTDNAQLIFVDTPGI 85 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K++++ + I+ D+V VVD + +++ S+ +IL +NK Sbjct: 86 HKPHHQLGKVLVQNAKIAIEAVDVVLFVVDGATPAGGGDRYISNLLSQTSTPVILGINKS 145 Query: 141 DCVKPERLLEQA--EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D P + L++ ++A+ + F SA G G + L L P+ Y + + Sbjct: 146 DLQSPGKGLDEGYHQLADPHNWQVTKF--SALTGDGLATLQEQLIDRLEQGPYYYPPNLV 203 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D P E+ RE++ L +E+P+S + + EE+ + ++ I+VER SQK I Sbjct: 204 TDQPERFIMGELIREQILLLTRQEVPHSVAITIDAVEEEPKITRIL-ATIHVERESQKGI 262 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K+I A+++I +++ V+L LFVKVQ W Sbjct: 263 LIGKKGSMLKSIGSAARQQIQKLIAGKVYLELFVKVQPKW 302 >gi|38234285|ref|NP_940052.1| GTP-binding protein Era [Corynebacterium diphtheriae NCTC 13129] gi|81829879|sp|Q6NG20|ERA_CORDI RecName: Full=GTPase Era gi|38200548|emb|CAE50243.1| Putative GTP-binding protein [Corynebacterium diphtheriae] Length = 305 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 157/289 (54%), Gaps = 7/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG ++ VG N GKSTL N VG K++I ++ +TTR +RGIV +++QI+ +DTPG+ Sbjct: 11 RSGFISFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGIVHREDAQIIVVDTPGL 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D++ + V + ++ I D +K++A ++ L+ I+ Sbjct: 71 HKPRTLLGERLNEVVKDTYADMDLIAITVPADEKIGPGDRWILDAVKKVAPKTP-LLGIV 129 Query: 138 NKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D +++ Q E+ L + VSA G D +L+ + LP P Y D Sbjct: 130 TKVDKASRDQVAVQLMELHELLGGNSEVVPVSAVTGEQRDVLLDVITRLLPEGPKFYPDD 189 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPS 254 I+D +E+ RE L E+P+S V ++ ++++G + + VIYVERP Sbjct: 190 HITDDDTETRLSELIREAALSGLKDELPHSVAVQIDEILPNDEREGVLDVHAVIYVERPG 249 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++GK+G+ + I A+ EI +IL V+L L +KV K+W DPK Sbjct: 250 QKSILIGKDGRRLGRIIHNARPEIIKILGSNVYLDLRIKVLKNWQQDPK 298 >gi|329912353|ref|ZP_08275734.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480] gi|327545640|gb|EGF30798.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480] Length = 300 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 163/292 (55%), Gaps = 19/292 (6%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R G +A+VG N GKSTL+N +GAKVSI + K QTTR + GI + +++Q +++DTP Sbjct: 9 NFRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTVEDTQFIYVDTP 68 Query: 79 GIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLI 134 G F K ++ +K + + +T+ AD++ ++++ + DL+ + I Sbjct: 69 G-FQTKHANALNKTLNKTVANTLTSADVILFLIEAGTFGPADQQVLDLIPDTVP----CI 123 Query: 135 LILNKIDCVKPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L++NK D VK + +L +IA K F VSAT G D + LP P Sbjct: 124 LVINKSDRVKDKAVLLPFAQQIAAKHDF-AAVVPVSATLGFQLDGLQKETRRFLPENPPE 182 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IY 249 + D I+D AEI REK+F + E+PY+S V+ EK+E++ D +R+V I Sbjct: 183 FGPDDITDRSEKFLAAEIIREKVFRFVGDELPYTSTVLIEKFEQEGD----LRRVFAAIL 238 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER + K +++G+ G +K IS +++ ++A + PV+L ++VKV+ W + Sbjct: 239 VERSTHKSMLIGQKGARLKEISTQSRLDMARLFGGPVYLEIWVKVKSGWADN 290 >gi|300864576|ref|ZP_07109435.1| GTP-binding protein Era [Oscillatoria sp. PCC 6506] gi|300337400|emb|CBN54583.1| GTP-binding protein Era [Oscillatoria sp. PCC 6506] Length = 350 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 154/283 (54%), Gaps = 9/283 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++G N GKSTL+N+ VG K++I + QTTR+ +RGI++ +E+QI+F+DTPGI Sbjct: 56 KSGFAGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGILTTEEAQIIFVDTPGI 115 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+++ + I D++ VVD+ ++ + + +IL LNK Sbjct: 116 HKPHHQLGKVLVHNAQLAIHSVDVLLFVVDASVPAGGGDRYIVDLLVNTQTPVILGLNKS 175 Query: 141 DCVKPERLLEQAEIAN---KLVFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D E QA++ N +L+ ++ +V SA G G + + L L P+ Y Sbjct: 176 DQQPSE---SQAQLDNTYTQLIEAKQWPIVKFSALTGEGVEALQQILIEHLEPGPYYYPP 232 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P E+ RE++ L +EIP+S + + EE + ++ I VER SQ Sbjct: 233 DLVTDQPERFIMGELIREQILLLTREEIPHSVAIAIDIVEEAPTITRVL-ATINVERDSQ 291 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++GK G +K I A+++I ++++ VHL LFVKVQ W Sbjct: 292 KGIVIGKGGSMLKEIGSAARQQIQKLIDGKVHLELFVKVQPKW 334 >gi|295838981|ref|ZP_06825914.1| GTP-binding protein Era [Streptomyces sp. SPB74] gi|197695534|gb|EDY42467.1| GTP-binding protein Era [Streptomyces sp. SPB74] Length = 316 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 161/298 (54%), Gaps = 19/298 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV E+Q++ +DTPG+ Sbjct: 16 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPGL 75 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLIL 135 + + + +R +W+ + D++ + + +++ + KE+A KR+ + + Sbjct: 76 HKPRTLLGERLNDVVRATWAEV---DVIGFCLPADQKIGPGDRFIAKELAGIKRTPK-VA 131 Query: 136 ILNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 I+ K D V +RL EQ + +L F + VSA +G + + L LP +P Sbjct: 132 IVTKTDLVDSKRLAEQLMAIDALGRELGFEWAEIVPVSAVEGKQVSLLADLLVPLLPESP 191 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK----DGSIL-IR 245 +Y ++D P AE+ RE + E+P+S VV E+ ++ D +L I Sbjct: 192 QLYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMNPREGRPADKPLLDIH 251 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++ER SQK I++G GQ +K + +++++I +L PV L L VK+ KDW DPK Sbjct: 252 ANLFIERSSQKGIVIGPKGQRLKDVGTKSRRQIEALLGTPVFLDLHVKIAKDWQRDPK 309 >gi|333027190|ref|ZP_08455254.1| putative GTP-binding protein Era [Streptomyces sp. Tu6071] gi|332747042|gb|EGJ77483.1| putative GTP-binding protein Era [Streptomyces sp. Tu6071] Length = 316 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 161/298 (54%), Gaps = 19/298 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV E+Q++ +DTPG+ Sbjct: 16 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPGL 75 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLIL 135 + + + +R +W+ + D++ + + +++ + KE+A KR+ + + Sbjct: 76 HKPRTLLGERLNDVVRATWAEV---DVIGFCLPADQKIGPGDRFIAKELAGIKRTPK-VA 131 Query: 136 ILNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 I+ K D V +RL EQ + +L F + VSA +G + + L LP +P Sbjct: 132 IVTKTDLVDSKRLAEQLMAIDALGRELGFEWAEIVPVSAVEGKQVSLLADLLVPLLPESP 191 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK----DGSIL-IR 245 +Y ++D P AE+ RE + E+P+S VV E+ ++ D +L I Sbjct: 192 QLYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMNPREGRPADKPLLDIH 251 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++ER SQK I++G GQ +K + +++++I +L PV L L VK+ KDW DPK Sbjct: 252 ANLFIERSSQKGIVIGPKGQRLKDVGTKSRRQIEALLGTPVFLDLHVKIAKDWQRDPK 309 >gi|262340851|ref|YP_003283706.1| putative GTP-binding protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272188|gb|ACY40096.1| putative GTP-binding protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 292 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 155/287 (54%), Gaps = 9/287 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N VG K+SI T+K QTTR + GI++E QI+F DTPGI Sbjct: 4 KSGFVNIIGFPNTGKSTLMNSLVGEKLSITTYKPQTTRHRILGIINESNFQIIFSDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K+M++ ++ ADI+ + + + + I + EI K + +I+++NKI Sbjct: 64 IDPVYPMQKIMMQYVEKALEDADIILFLTEIGKLENIPIFN---EIKKTNVPIIILINKI 120 Query: 141 DCV----KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D + + L + +KL + +SA K D ++N + L P YS + Sbjct: 121 DQIGIKYREYVLYDAINHWHKLFPNSEILPISALKKMNQDLLMNKIIDLLSEHPPYYSKE 180 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 +S+ F EI REK F + KEIPYS + T ++++K I I IYVER SQK Sbjct: 181 FLSNRSKRFFVNEIIREKYFF-IQKEIPYSVEINTILFKKEKT-FIYILSYIYVERNSQK 238 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++GK G ++K + + K I L + L L+VKV W +D K Sbjct: 239 GILIGKRGDSLKKLKFFSIKSIESFLRTKIKLNLYVKVSPYWRYDYK 285 >gi|152990747|ref|YP_001356469.1| GTP-binding protein Era [Nitratiruptor sp. SB155-2] gi|151422608|dbj|BAF70112.1| GTP-binding protein Era [Nitratiruptor sp. SB155-2] Length = 293 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 152/286 (53%), Gaps = 7/286 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VALVG NAGKSTL+N +G K+++V+HK Q TR + IV QIVF+DTPG Sbjct: 4 TRSGFVALVGRPNAGKSTLLNWLLGEKIAMVSHKAQATRKRLYAIVMHGNDQIVFIDTPG 63 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + +K M+ + I D++ + + + LK R I++L K Sbjct: 64 LHEKERLLNKFMLEEAIKAIGDCDLILFLAPVTDPI-THYEKFLKLAKNRPH--IVVLTK 120 Query: 140 IDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID V E+LL++ K F+E VS K G D+L+ + LP P+ Y + Sbjct: 121 IDMVSNEKLLQKIAEYQKFQDQFLE-LVPVSVKKDIGKKDLLDTIVRYLPEHPYYYDPEL 179 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++ + E+ RE +F ++ EIPY S V+ EK EE + +I VE+PSQK Sbjct: 180 LTTENIKDIYKELIREAIFENVSDEIPYESDVIIEKIEESPTLDKVYAMII-VEKPSQKG 238 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++GK G +K I +A+K + ++ + L LFV V+K W + K Sbjct: 239 IIIGKQGSTLKRIGKDARKLMEAFSQKKIFLNLFVVVKKGWTKNKK 284 >gi|261392940|emb|CAX50525.1| putative Era-like GTP-binding protein [Neisseria meningitidis 8013] gi|309378208|emb|CBX23152.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 307 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 102/287 (35%), Positives = 159/287 (55%), Gaps = 11/287 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 17 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 76 Query: 81 FNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 D + L RL+ + + D V VV++ R + +LK++ K + +IL++ Sbjct: 77 --QTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDAD-RVVLKQLPKHTP-VILVV 132 Query: 138 NKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 NKID K +R +A +A VSA G ++L + LP + +Y Sbjct: 133 NKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYP 192 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V++ S Sbjct: 193 EDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVDKES 251 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 252 QKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 298 >gi|149197046|ref|ZP_01874099.1| GTP-binding protein Era [Lentisphaera araneosa HTCC2155] gi|149140156|gb|EDM28556.1| GTP-binding protein Era [Lentisphaera araneosa HTCC2155] Length = 301 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 148/277 (53%), Gaps = 2/277 (0%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VG NAGKST VN+ +G K++ V+ TTR GI ++ ++QI+F DTPGI Sbjct: 11 GYVAIVGRPNAGKSTFVNQALGYKLAAVSRVPHTTRRRWVGIFTDDDAQIIFSDTPGIHE 70 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +K+ ++M R I DI L+ D RE + K A IL+LNK D Sbjct: 71 SKNRMDEMMDRTIKRAIDKNDITLLLCDPMREFGMEDEMAAKAAAAGGKPTILVLNKCDK 130 Query: 143 VKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 E E ++ + K +SA G +++L + LP P++Y DQI+D Sbjct: 131 ASAEEKREMESNYSAHFSEKPKIHHMSALNNEGVNELLELIKELLPKGPFLYPDDQIADA 190 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 + +I RE LH E+P+S V+ +KW+E ++ I I + VER SQK+I++G Sbjct: 191 FLRDIGEDIIRESALELLHSELPHSLAVMIDKWDE-REKKIKIEATVLVERESQKQIVIG 249 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G+ ++ I +++ ++ + E+ V L LFVKV DW Sbjct: 250 SGGKMVQEIQRQSRSKLGKSFEKFVDLRLFVKVMPDW 286 >gi|260903862|ref|ZP_05912184.1| GTP-binding protein Era [Brevibacterium linens BL2] Length = 311 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 146/293 (49%), Gaps = 7/293 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R+G VG N GKSTL N VG KV+I + K QTTR +RGIV + + Q++ +DT Sbjct: 9 ENYRAGFACFVGRPNTGKSTLTNALVGEKVAITSAKPQTTRHTIRGIVHKDDHQLILVDT 68 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LIL 135 PG+ + + L ST+ D++ + + + + ++ R ++ Sbjct: 69 PGLHKPRTLLGSRLNDLVASTLSEVDVIGFCLPADEPIGPGDRYIASQLELLDGRTPIVA 128 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++ K D V E++ E +L VSA G D V L LP++P +Y Sbjct: 129 LVTKTDKVPQEKVAEALLAVGQLADFADVVPVSAVDGFQIDTVDTVLTGHLPVSPPLYPE 188 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW---EEKKDGSIL--IRQVIYV 250 +++D P AE+ RE + E+P+S E+ E + + + L + +YV Sbjct: 189 GELTDEPEEMMIAELVREAALEGVRDELPHSLAAQVEEMYPREGRSEDNPLWNVHVNLYV 248 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ER SQK I++GK G +K I E+++ I +L V+L L VK+ KDW DPK Sbjct: 249 ERSSQKAIIIGKGGSRLKAIGSESRRGIEALLGTKVYLDLHVKIAKDWQRDPK 301 >gi|302766117|ref|XP_002966479.1| hypothetical protein SELMODRAFT_64762 [Selaginella moellendorffii] gi|300165899|gb|EFJ32506.1| hypothetical protein SELMODRAFT_64762 [Selaginella moellendorffii] Length = 310 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 158/290 (54%), Gaps = 13/290 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S V ++GA NAGKS+L+N VG KVS V+ K TTR+ + G+++E ++Q++F DT Sbjct: 21 DEQMSVRVGIIGAPNAGKSSLLNFMVGTKVSAVSRKTNTTRNEILGVLTENDTQVLFYDT 80 Query: 78 PGIF-----NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKR 129 PG+ A K ++ +W H +++ ++VD+HR+++ + L++++ ++ Sbjct: 81 PGLMMRWKGQAVRRDVKSRVQSAWMVTGHCEVLIVLVDAHRQIERPDQRVRKLIEKLGEK 140 Query: 130 ---SSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + IL LNK+D ++ +R L+ A+ L ++ FM+S +G G + YL Sbjct: 141 KDPKQKRILCLNKVDLIRQKRELVPLAQEFGSLPGYDRVFMISGLRGSGVRHLKEYLLEK 200 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 PW ++D+ E+ E + ++H+EIPY W+ KD SI I Sbjct: 201 AVPRPWEEEKGVVTDMSPIAVAKEVVWEHVLDNVHQEIPYHLHHKHVSWKILKDRSIRIE 260 Query: 246 QVIYVERPSQKKIMLGKNGQ-NIKTISLEAKKEIAEILEQPVHLILFVKV 294 Q I V SQKKI++GKNG + + I + A +E++ VHLIL VK+ Sbjct: 261 QQIIVPTDSQKKILIGKNGACSSRKIGMAANEELSARFGAKVHLILDVKI 310 >gi|302518983|ref|ZP_07271325.1| GTP-binding protein Era [Streptomyces sp. SPB78] gi|302427878|gb|EFK99693.1| GTP-binding protein Era [Streptomyces sp. SPB78] Length = 392 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 100/315 (31%), Positives = 165/315 (52%), Gaps = 19/315 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 G + +E R+G VG NAGKSTL N VG KV+I +++ QTTR VRG Sbjct: 75 GRMARMSEPSTAPAAPHRAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRG 134 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIH 120 IV E+Q++ +DTPG+ + + + +R +W+ + D++ + + +++ Sbjct: 135 IVHRPEAQLILVDTPGLHKPRTLLGERLNDVVRATWAEV---DVIGFCLPADQKIGPGDR 191 Query: 121 DLLKEIA--KRSSRLILILNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGH 173 + KE+A KR+ + + I+ K D V +RL EQ + +L F + VSA +G Sbjct: 192 FIAKELAGIKRTPK-VAIVTKTDLVDSKRLAEQLMAIDALGRELGFEWAEIVPVSAVEGK 250 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK 233 + + L LP +P +Y ++D P AE+ RE + E+P+S VV E+ Sbjct: 251 QVSLLADLLVPLLPESPQLYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEE 310 Query: 234 WEEKK----DGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHL 288 ++ D +L I +++ER SQK I++G GQ +K + +++++I +L PV L Sbjct: 311 MNPREGRPADKPLLDIHANLFIERSSQKGIVIGPKGQRLKDVGTKSRRQIEALLGTPVFL 370 Query: 289 ILFVKVQKDWGHDPK 303 L VK+ KDW DPK Sbjct: 371 DLHVKIAKDWQRDPK 385 >gi|317508759|ref|ZP_07966410.1| GTP-binding protein Era [Segniliparus rugosus ATCC BAA-974] gi|316252953|gb|EFV12372.1| GTP-binding protein Era [Segniliparus rugosus ATCC BAA-974] Length = 301 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 141/286 (49%), Gaps = 4/286 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V G N GKS+L+N VGA+V I + QTTR VR I++ E QIV +DTPG+ Sbjct: 10 RSGFVCFAGRPNVGKSSLINALVGAEVMITSAHPQTTRRAVRAILNAPEHQIVIVDTPGV 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRLILILN 138 + + + + + D+V V + E+ +L ++ + + ++LI ++ Sbjct: 70 HRPRTALSERLNDAAAQAFAEVDVVGFCVPADEEIGPGDRFILDQVRREAPKAKLIGLVT 129 Query: 139 KIDCVKPERLLEQAEIANKLVFIE-KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID ER EQ + L+ E + VS + L +P P Y DQ Sbjct: 130 KIDKRGRERTAEQLLALSVLLGPEHEVVPVSRQSPEQLSALTELLVGLMPEGPPWYPTDQ 189 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 + D AE+ RE L E+P+S VV E+ E KK G ++ +YVERPSQK Sbjct: 190 VVDDSDEARVAELVREAALARLRDELPHSVMVVVEETERKK-GLWVVYASLYVERPSQKA 248 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++G G ++ I A+ I VHL L VKV KDW DPK Sbjct: 249 IVIGAKGSVLREIGAAARSRIEAAFGTRVHLDLRVKVAKDWQRDPK 294 >gi|318061175|ref|ZP_07979896.1| GTPase Era [Streptomyces sp. SA3_actG] gi|318081602|ref|ZP_07988917.1| GTPase Era [Streptomyces sp. SA3_actF] Length = 313 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 161/298 (54%), Gaps = 19/298 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV E+Q++ +DTPG+ Sbjct: 13 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLILVDTPGL 72 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLIL 135 + + + +R +W+ + D++ + + +++ + KE+A KR+ + + Sbjct: 73 HKPRTLLGERLNDVVRATWAEV---DVIGFCLPADQKIGPGDRFIAKELAGIKRTPK-VA 128 Query: 136 ILNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 I+ K D V +RL EQ + +L F + VSA +G + + L LP +P Sbjct: 129 IVTKTDLVDSKRLAEQLMAIDALGRELGFEWAEIVPVSAVEGKQVSLLADLLVPLLPESP 188 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK----DGSIL-IR 245 +Y ++D P AE+ RE + E+P+S VV E+ ++ D +L I Sbjct: 189 QLYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMNPREGRPADKPLLDIH 248 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++ER SQK I++G GQ +K + +++++I +L PV L L VK+ KDW DPK Sbjct: 249 ANLFIERSSQKGIVIGPKGQRLKDVGTKSRRQIEALLGTPVFLDLHVKIAKDWQRDPK 306 >gi|237748852|ref|ZP_04579332.1| GTP-binding protein Era [Oxalobacter formigenes OXCC13] gi|229380214|gb|EEO30305.1| GTP-binding protein Era [Oxalobacter formigenes OXCC13] Length = 299 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 163/289 (56%), Gaps = 7/289 (2%) Query: 17 QDNS--RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 Q+NS RSG +A+VG N GKSTL+N +GAKVSI + K QTTR + GI +++++Q ++ Sbjct: 4 QENSHFRSGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRIMGIQTDEDTQFIY 63 Query: 75 LDTPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DTPG F + ++ +K + + +T+ AD++ VVD+ + + +L I K+ Sbjct: 64 IDTPG-FQTRYNNALNKTLNKTVTNTLTSADVILFVVDADVFGQAD-QQVLDLIPKKVPT 121 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +++I + L+ AE + L VSA + D + N + LP P + Sbjct: 122 ILVINKTDKVKDKKDLMPFAEKVSALRDFAAIVPVSARQRFQLDRLENEIRHFLPENPPM 181 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 + + ++D AEI REK+F + E+PY+S VV E++ E+K+ + + VER Sbjct: 182 FDPEDVTDRSERFMAAEIIREKIFRYTGDELPYTSTVVIEQF-ERKEKICRVFAAVLVER 240 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + K +++G G+ +K IS EA+ ++ ++ PV+L ++VKV+ W + Sbjct: 241 DAHKAMIIGHKGEKLKEISTEARLDMEKMFGVPVYLEIWVKVKSGWADN 289 >gi|190575413|ref|YP_001973258.1| GTP-binding protein Era [Stenotrophomonas maltophilia K279a] gi|226741239|sp|B2FPX8|ERA_STRMK RecName: Full=GTPase Era gi|190013335|emb|CAQ46969.1| putative GTP-binding protein [Stenotrophomonas maltophilia K279a] Length = 298 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 159/290 (54%), Gaps = 22/290 (7%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ Sbjct: 10 GSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHK 69 Query: 83 A-KDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRSSRLILI 136 K + +++M R + +++ D LV+++ R L N+ + ++L+ Sbjct: 70 VQKRAMNRVMNRAARGSLEGVDAGLLVIEAGRWDEEDSLAFNV------LRDAGIPVVLV 123 Query: 137 LNKIDCVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +NKID +K + L+Q + +SA K +G + ++ + LP AP + Sbjct: 124 VNKIDRLKEKGALLPFLQQVTEGRDFAAVHP---ISAQKRNGLEALVRDVLKLLPEAPPM 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + D+I+D E+ RE+L L +E+PY++ V E++ E DG++L I VI+VE Sbjct: 181 FGEDEITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFTE--DGNLLRIGAVIWVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 R QK I++GK G +K I +++ ++ + V L +V+V++ W D Sbjct: 239 REGQKAIVIGKGGARLKEIGAKSRLQMERLFGAKVFLETWVRVREGWSDD 288 >gi|326333977|ref|ZP_08200207.1| GTP-binding protein Era [Nocardioidaceae bacterium Broad-1] gi|325948256|gb|EGD40366.1| GTP-binding protein Era [Nocardioidaceae bacterium Broad-1] Length = 315 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 151/300 (50%), Gaps = 22/300 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG NAGKSTL N VG KV+I + K QTTR++V+GIV + Q++ +DTPGI Sbjct: 14 RSGFVSFVGRPNAGKSTLTNALVGTKVAITSDKPQTTRTVVKGIVHRPDGQLILVDTPGI 73 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCL-------VVDSHRELKVNIHDLLKEIAKRSSRL 133 + + + L +T D+V + + R + N + L K I + Sbjct: 74 HRPRTLLGERLNDLVEATWTEVDVVAICFPCNEKIGPGDRRIAENANKLKKGIKR----- 128 Query: 134 ILILNKIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + + K D PE++ E QA + + + VS+ G D + L LP Sbjct: 129 VAVATKTDLATPEQIGEHLMSIQALGQDLGIEWAEIVPVSSVGGDQVDLLAELLIKLLPE 188 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----IL 243 P +Y +++D P AE+ RE + E+P+S VV E+ ++D + Sbjct: 189 GPPLYPDGELTDSPEEIIVAELIREAALEGVRDELPHSIAVVVEEMRLREDRPENKPLMD 248 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I +YVER SQK I++G G +K + A+ +I E+L PV+L L VK+ KDW DP+ Sbjct: 249 IHAFLYVERDSQKGIVIGHKGSRLKDVGQRARLQIKELLGMPVYLDLHVKIAKDWQRDPR 308 >gi|71274463|ref|ZP_00650751.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Xylella fastidiosa Dixon] gi|71901684|ref|ZP_00683760.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Xylella fastidiosa Ann-1] gi|170730565|ref|YP_001775998.1| GTP-binding protein Era [Xylella fastidiosa M12] gi|226741406|sp|B0U3D9|ERA_XYLFM RecName: Full=GTPase Era gi|71164195|gb|EAO13909.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Xylella fastidiosa Dixon] gi|71728554|gb|EAO30709.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Xylella fastidiosa Ann-1] gi|167965358|gb|ACA12368.1| GTP binding protein [Xylella fastidiosa M12] Length = 298 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 163/290 (56%), Gaps = 18/290 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A++G N GKSTL N VG K+SIV+++ QTTR + GI + E QIV +DTPG+ Sbjct: 8 RCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLVDTPGL 67 Query: 81 FN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILIL 137 K ++LM R + +++ D LV +S E ++LL + ++L++ Sbjct: 68 HREQKHPMNRLMNRTARGSLEDVDAALLVTESTHWNEEDTLAYNLLNDTG---IPVVLVI 124 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEK--TFM----VSATKGHGCDDVLNYLCSTLPLAPW 191 NKID R +++ + L I + TF VSA K G + +++ L + LP Sbjct: 125 NKID-----RFKDKSALLPLLTHINENHTFATIHPVSALKRKGLETLVSDLLALLPEGDP 179 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 ++S D+I+D +E+ RE++ L +E+PY++ V E + E G I +I+VE Sbjct: 180 MFSEDEITDRSQRFLASELVREQVMRQLGEELPYATTVEIEYFTENT-GLFRIGALIWVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 R SQK I++GK G +K I ++A++++ + + V L +V+V+KDW ++ Sbjct: 239 RESQKAIVIGKGGARLKEIGVKARQQMERLFQTKVFLETWVRVRKDWSNN 288 >gi|194366746|ref|YP_002029356.1| GTP-binding protein Era [Stenotrophomonas maltophilia R551-3] gi|226741238|sp|B4SRK9|ERA_STRM5 RecName: Full=GTPase Era gi|194349550|gb|ACF52673.1| GTP-binding protein Era [Stenotrophomonas maltophilia R551-3] Length = 298 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 95/295 (32%), Positives = 162/295 (54%), Gaps = 32/295 (10%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ Sbjct: 10 GSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHK 69 Query: 83 A-KDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRSSRLILI 136 K + +++M R + +++ D LV+++ R L N+ + ++L+ Sbjct: 70 VQKRAMNRVMNRAARGSLEGVDAGLLVIEAGRWDEEDSLAFNV------LRDAGIPVVLV 123 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFM---------VSATKGHGCDDVLNYLCSTLP 187 +NKID +K + L L F+++ +SA K +G + ++ + + LP Sbjct: 124 VNKIDRLKDKGAL--------LPFLQEVTAGRDFSSVHPISAQKRNGLEALVRDVLALLP 175 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQ 246 AP ++ D+I+D E+ RE+L L +E+PY++ V E++ E DG++L I Sbjct: 176 EAPPMFGEDEITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFTE--DGNLLRIGA 233 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VI+VER QK I++GK G +K I +++ ++ + V L +V+V++ W D Sbjct: 234 VIWVEREGQKAIVIGKGGTRLKEIGAKSRLQMERLFGAKVFLETWVRVREGWSDD 288 >gi|289450697|ref|YP_003475263.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185244|gb|ADC91669.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 563 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 154/289 (53%), Gaps = 12/289 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG NAGKSTL+N G ++IV+ K QTTR+ +R I + + Q++F+DTPG+ Sbjct: 260 KSGFVSIVGRPNAGKSTLLNAISGQHLAIVSRKAQTTRNNIRSIYNARGVQMIFIDTPGL 319 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL--ILILN 138 K M + + ++DI+ L++D+ + +I + + A+ S RL ++ N Sbjct: 320 HEPDTELGKYMQEAAKKALSNSDILLLMIDACKAGPTSIEENCLKTAQ-SLRLPTVIAFN 378 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID + LL +L + +SA G ++L L LP P Y D Sbjct: 379 KIDLIDKSALLPVLNRYRQLAPQAEIIPISAKLSDGVGELLRVLTGLLPTGPRYYPVDSF 438 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--------KKDGSIL-IRQVIY 249 +D E+ RE+L ++ H+E+P+ + V+ + +EE D S++ I I Sbjct: 439 TDQSERQIAGEMIREQLLIYTHEEVPHGTAVIIDSFEEVAAENSTDPYDRSLVRIHASIL 498 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++ S K I++GK GQ++K I A+ I ++L+ V+L L VKV+ DW Sbjct: 499 CDKESHKGIIIGKGGQSLKRIGSAARHNIEKMLDCKVYLELHVKVRPDW 547 >gi|154509437|ref|ZP_02045079.1| hypothetical protein ACTODO_01968 [Actinomyces odontolyticus ATCC 17982] gi|153799071|gb|EDN81491.1| hypothetical protein ACTODO_01968 [Actinomyces odontolyticus ATCC 17982] Length = 412 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 151/300 (50%), Gaps = 8/300 (2%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E DF +D R+G V++VG N GKSTL N VG K++I + + +TTR +RGIV Sbjct: 107 EMPDFPED-FRAGFVSIVGRPNVGKSTLTNALVGHKIAITSGRPETTRHNIRGIVHGDNY 165 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 Q+V +DTPG + K + + + D+V + + + + + +E+ Sbjct: 166 QLVLVDTPGYHRPRTLLGKRLNDMVREALSEVDVVLFCLPADQRIGPGDQFIARELRGIK 225 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +I + K D V ER+++ KL VS+ +G G D + L T+PL+P Sbjct: 226 RPIIAVATKCDAVPRERVMKHLLSIEKLGEWAAIVPVSSVEGKGIDHLREVLAQTVPLSP 285 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--KKDGS-----IL 243 +Y ++D AE RE + E+P+S V E+ E +++G + Sbjct: 286 PLYPEGDVTDESRDTLIAEFIREAALEGVRDELPHSLAVQVEEIIERPRREGDDRPPMLD 345 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I +YVER SQK I++G+ G +K I +A+ I E+L + V+L L V+ KDW DPK Sbjct: 346 IHVNVYVERDSQKAIIIGRKGSRLKQIGTQARAHIEELLGRRVYLDLHVRTAKDWQSDPK 405 >gi|15838838|ref|NP_299526.1| GTP-binding protein Era [Xylella fastidiosa 9a5c] gi|13959361|sp|Q9PB97|ERA_XYLFA RecName: Full=GTPase Era gi|9107401|gb|AAF85046.1|AE004037_7 GTP binding protein [Xylella fastidiosa 9a5c] Length = 298 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 163/290 (56%), Gaps = 18/290 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A++G N GKSTL N VG K+SIV+++ QTTR + GI + E QIV +DTPG+ Sbjct: 8 RCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLVDTPGL 67 Query: 81 FN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILIL 137 K ++LM R + +++ D LV +S E ++LL + ++L++ Sbjct: 68 HREQKHPMNRLMNRTARGSLEDVDAALLVTESTHWNEEDTLAYNLLNDTG---IPVVLVI 124 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEK--TFM----VSATKGHGCDDVLNYLCSTLPLAPW 191 NKID R +++ + L I + TF VSA K G + +++ L + LP Sbjct: 125 NKID-----RFKDKSALLPFLTHINENHTFTTIHPVSALKRKGLETLVSDLLALLPEGDP 179 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 ++S D+I+D +E+ RE++ L +E+PY++ V E + E G I +I+VE Sbjct: 180 MFSEDEITDRSQRFLASELVREQVMRQLGEELPYATTVEIEYFTENT-GLFRIGALIWVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 R SQK I++GK G +K I ++A++++ + + V L +V+V+KDW ++ Sbjct: 239 RESQKAIVIGKGGARLKEIGVKARQQMERLFQTKVFLETWVRVRKDWSNN 288 >gi|293189528|ref|ZP_06608248.1| GTP-binding protein Era [Actinomyces odontolyticus F0309] gi|292821618|gb|EFF80557.1| GTP-binding protein Era [Actinomyces odontolyticus F0309] Length = 412 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 151/300 (50%), Gaps = 8/300 (2%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E DF +D R+G V++VG N GKSTL N VG K++I + + +TTR +RGIV Sbjct: 107 EMPDFPED-FRAGFVSIVGRPNVGKSTLTNALVGHKIAITSGRPETTRHNIRGIVHGDNY 165 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 Q+V +DTPG + K + + + D+V + + + + + +E+ Sbjct: 166 QLVLVDTPGYHRPRTLLGKRLNDMVREALSEVDVVLFCLPADQRIGPGDQFIARELRGIK 225 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +I + K D V ER+++ KL VS+ +G G D + L T+PL+P Sbjct: 226 RPIIAVATKCDAVPRERVMKHLLSIEKLGEWAAIVPVSSVEGKGIDHLREVLAQTVPLSP 285 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--KKDGS-----IL 243 +Y ++D AE RE + E+P+S V E+ E +++G + Sbjct: 286 PLYPEGDVTDESRDTLIAEFIREAALEGVRDELPHSLAVQVEEIIERPRREGDDRPPMLD 345 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I +YVER SQK I++G+ G +K I +A+ I E+L + V+L L V+ KDW DPK Sbjct: 346 IHVNVYVERDSQKAIIIGRKGSRLKQIGTQARAHIEELLGRRVYLDLHVRTAKDWQSDPK 405 >gi|269794669|ref|YP_003314124.1| GTP-binding protein Era [Sanguibacter keddieii DSM 10542] gi|269096854|gb|ACZ21290.1| GTP-binding protein Era [Sanguibacter keddieii DSM 10542] Length = 314 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 153/293 (52%), Gaps = 10/293 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG KV+I + + QTTR +RGIV+ ++Q++ +DTPG+ Sbjct: 15 RSGFACFVGRPNAGKSTLTNALVGQKVAITSDRPQTTRHTIRGIVNRPDAQLILVDTPGL 74 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEI--AKRSSRLIL 135 + + + L T+ D++ + + +++ I + L E+ +R + +I Sbjct: 75 HRPRTLLGERLNDLVRDTLSEVDVIAFCLPADQKVGPGDRYIANQLAELNRGRRGTPVIA 134 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++ K D V E+L ++L VSA G+ + + L LP +Y Sbjct: 135 VVTKADLVTHEQLALHLLSVDQLGEWADIVPVSAKGGYQVGTLADVLVKHLPEGGELYPD 194 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGS---ILIRQVIYV 250 +++D P AE+ RE + E+P+S VV ++ E +GS + +R I+V Sbjct: 195 GELTDEPEAVMVAELVREAALEGVRDELPHSLAVVVDEILPREGSNGSNPLLDVRVNIFV 254 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ER SQK I++G+ G ++ I E+++ I +L V+L L VKV KDW DPK Sbjct: 255 ERDSQKAIIIGRGGSRLRHIGTESRRGIEALLGNRVYLDLHVKVAKDWQRDPK 307 >gi|298490731|ref|YP_003720908.1| GTP-binding protein Era ['Nostoc azollae' 0708] gi|298232649|gb|ADI63785.1| GTP-binding protein Era ['Nostoc azollae' 0708] Length = 318 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 161/306 (52%), Gaps = 23/306 (7%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 GE+T +F +SG + ++G N GKSTL+N+ VG K++I + QTTR+ +RG Sbjct: 13 GEVTIPQAPPEF-----KSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRG 67 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 I++ ++Q++F+DTPGI +++++ + I+ D+V VVD + Sbjct: 68 ILTTDKAQLIFVDTPGIHQPHHQLGEVLVKNAKIAIESVDVVLFVVDGTAACGGGDRFIT 127 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKL--VFIE-------KTFMVSATKGHG 174 + +++ + +IL +NKID EQ A KL +I+ +T SA G Sbjct: 128 ELLSRSQTAVILGINKID--------EQPADAEKLDDSYIQLAKEHQWETIKFSAKTALG 179 Query: 175 CDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW 234 + L L P+ Y D ++D P E+ RE++ L +E+P+S + + Sbjct: 180 LVEAQELLIEHLEPGPFYYPPDLVTDQPEQFIMGELIREQILLLTREEVPHSVAIAIDLV 239 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 EE + ++ I+VER SQK I++GK G +K I +A+++I +++ V+L LFVKV Sbjct: 240 EETPSITRVL-ATIHVERDSQKGILIGKGGTMLKAIGSKAREQIQKLIAGKVYLELFVKV 298 Query: 295 QKDWGH 300 Q W H Sbjct: 299 QPKWRH 304 >gi|297160580|gb|ADI10292.1| GTP-binding protein Era [Streptomyces bingchenggensis BCW-1] Length = 318 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 159/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q+V +DTPG+ Sbjct: 18 RAGFACFVGRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPGL 77 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L + E+A + + I I Sbjct: 78 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDRFIAGELAGIKKTPKIAI 134 Query: 137 LNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V ++L EQ + +L F + VSAT+G+ + + L LP +P Sbjct: 135 VTKTDLVDSQQLAEQLIAVDRLGKELGFEWAEIVPVSATEGNQVGLLADLLAPLLPESPA 194 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 195 LYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADRPLLDIHA 254 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + +++K I +L PV L L VKV KDW DPK Sbjct: 255 NLYIERPSQKGIIIGPKGKRLKEVGTKSRKHIEALLGTPVFLDLHVKVAKDWQRDPK 311 >gi|269468621|gb|EEZ80265.1| GTPase [uncultured SUP05 cluster bacterium] Length = 294 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/291 (35%), Positives = 156/291 (53%), Gaps = 8/291 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N ++G +A+VG N GKSTL+N +G K+SI +H+ QTTR + I + Q+VF+DTP Sbjct: 2 NFKAGFIAVVGRPNVGKSTLINELIGQKLSITSHRPQTTRHRIHAIDTADNYQMVFVDTP 61 Query: 79 GI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 GI K + + M + + S+I+ D++ +V+S + K + +L+ I + +IL + Sbjct: 62 GIHIGNKKAINSYMNKAASSSIRDVDMILWLVESDKWTKEDSR-VLEHIEQVDVPVILCI 120 Query: 138 NKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NKID ++ E L +IA K E F +SA K + + LP ++ Sbjct: 121 NKIDKLRSAQEVLPFLEKIATKYQPTE-LFPLSAFKKRDTQALRELILKHLPEQEMIFDP 179 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPS 254 D I+D AE REKL HL E+PY V EK+E DG + I IYV++ S Sbjct: 180 DFITDRSEKFVVAEFIREKLMRHLEDELPYDLTVEIEKYE--LDGKMQRIAARIYVDKAS 237 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G G+ +K I EA+K I L++ V L L+VKV W D + Sbjct: 238 QKNIVIGYKGEMLKLIGTEARKSIEGFLDRKVFLQLWVKVSTGWSDDKRAL 288 >gi|15601925|ref|NP_244997.1| GTP-binding protein Era [Pasteurella multocida subsp. multocida str. Pm70] gi|13959355|sp|Q9CPH8|ERA_PASMU RecName: Full=GTPase Era gi|12720268|gb|AAK02144.1| Era [Pasteurella multocida subsp. multocida str. Pm70] Length = 306 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/295 (32%), Positives = 158/295 (53%), Gaps = 11/295 (3%) Query: 18 DNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 DN+++ C +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI ++ Q V++ Sbjct: 8 DNAKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTDGPYQAVYV 67 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSR 132 DTPG+ K + ++LM R + S I D++ VVD N D +L ++ + Sbjct: 68 DTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG---THWNEDDEMVLNKLRAAKAP 124 Query: 133 LILILNKIDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++L +NKID +K E L E+ +K F +SA G ++ + +L Sbjct: 125 VVLAINKIDNIKNKEEMLPFITELTSKFDFAH-VVPISAQGGKNIAELEKIVRESLHEGT 183 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + + ++D +EI REKL E+PYS V E+++ + G+ I +I V Sbjct: 184 HHFPEEYVTDRSQRFMASEIIREKLMRFTGDELPYSVTVEIEQFKLNERGTYEINGLILV 243 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKK+++G GQ IK I +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 244 EREGQKKMVIGNKGQKIKQIGIEARADMERLFDNKVHLELWVKVKSGWADDERAL 298 >gi|313114169|ref|ZP_07799721.1| GTP-binding protein Era [Faecalibacterium cf. prausnitzii KLE1255] gi|310623578|gb|EFQ06981.1| GTP-binding protein Era [Faecalibacterium cf. prausnitzii KLE1255] Length = 295 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/276 (31%), Positives = 143/276 (51%), Gaps = 2/276 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L N VG KV+IVT K QTTR+ + G+++ Q V LDTPG+ A+ Sbjct: 1 MAVIGRPNVGKSSLTNLLVGEKVAIVTSKPQTTRTRITGVITRGPLQYVLLDTPGVHKAR 60 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + K M + + +I D+ ++ + + L + L+ + I ++NK D VK Sbjct: 61 NKLGKRMDKTASDSIADVDVSMMLFEPYGALNESEMVLVDMLRSSGGPAIAVINKTDLVK 120 Query: 145 -PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 P L + E L + + +S GC+ + + L P + D +D+P Sbjct: 121 EPADLEARKEELKALGVFDDIYTISVRDNDGCEVLFDALSRYAVEGPHYFDDDAYTDMPE 180 Query: 204 FHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV-IYVERPSQKKIMLGK 262 AE+ REK L + EIP+ VV E+++E+ ++ V IY ER S K +++GK Sbjct: 181 KELVAEVIREKALLFMRDEIPHGIAVVVERFKERPGTDLIDIDVNIYCERESHKGMVIGK 240 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G +K I+ A+ + E L V+L +VKV+ DW Sbjct: 241 GGAMLKKIASAARADCEEFLGCRVNLQCWVKVKSDW 276 >gi|294340984|emb|CAZ89379.1| GTP-binding protein era [Thiomonas sp. 3As] Length = 301 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 152/285 (53%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VGAKVSI +HK QTTR + G+ + SQ F+DTPG Sbjct: 11 RFGTVAIVGRPNVGKSTLLNALVGAKVSITSHKAQTTRHRILGVTTRGASQFAFVDTPG- 69 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + + ++ M R + D+V V+++ + L + L E+ +I ++N Sbjct: 70 FQTQHMHALNRAMNRTVTGALSEVDLVLWVLEAGKILPQDRTVL--EVLPDDRPVIAVVN 127 Query: 139 KIDCVKP-ERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D + P E+LL AE+ F E M SA K +L+ + L W Y D Sbjct: 128 KLDRITPREKLLPWLAELGQLRKFAEIVPM-SAQKKADAPRLLSIMEPYLHEGEWGYEED 186 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D AEI REKLF E+PY+S VV E++ ++ D I I V+R K Sbjct: 187 ALTDRSERFLAAEILREKLFRLTGDELPYTSTVVIEQFAQEGDLR-RISAAIIVDRDGHK 245 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++G G+ +K IS EA++++ + + PV L ++VK + W D Sbjct: 246 AMVIGAGGERLKRISTEARQDMQVLFDGPVFLEVWVKTRSGWADD 290 >gi|17228407|ref|NP_484955.1| GTP-binding protein Era [Nostoc sp. PCC 7120] gi|17130258|dbj|BAB72869.1| GTP-binding protein [Nostoc sp. PCC 7120] Length = 337 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 159/301 (52%), Gaps = 13/301 (4%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 GE++ +F +SG + ++G N GKSTL+N+ VG K++I + QTTR+ +RG Sbjct: 32 GEVSIPQAPPEF-----KSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRG 86 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IH 120 IV+ E+Q++F+DTPGI +++++ + I+ D+V VVD I Sbjct: 87 IVTTPEAQLIFVDTPGIHKPHHQLGEVLVKNAKLAIESVDVVLFVVDGAVACGAGDRFIA 146 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 DLL + +IL +NK+D P+ + ++++ + T SA G + Sbjct: 147 DLL---IHSKTPVILGINKVDQQPPDSQKIDESYQQLASAYQWPTVKFSAKTGAELPQLQ 203 Query: 180 NYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD 239 L L P+ Y D ++D P E+ RE++ L +E+P+S + + EE Sbjct: 204 ELLVEHLEHGPYYYPPDLVTDQPERFIMGELIREQILLLTREEVPHSVAIAIDLVEETPT 263 Query: 240 GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 + ++ I+VER SQK I++GK G +K+I A+++I +++ V+L LFVKVQ W Sbjct: 264 ITRVL-ATIHVERDSQKGILIGKGGSMLKSIGSAAREQIQKLIAGKVYLELFVKVQPKWR 322 Query: 300 H 300 H Sbjct: 323 H 323 >gi|117928001|ref|YP_872552.1| GTP-binding protein Era [Acidothermus cellulolyticus 11B] gi|117648464|gb|ABK52566.1| GTP-binding protein Era [Acidothermus cellulolyticus 11B] Length = 297 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 148/285 (51%), Gaps = 2/285 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +VG N GKSTL+N V KV+I + + QTTR +VRG+V ++Q+V +DTPG+ Sbjct: 6 RSGFACIVGRPNVGKSTLLNAMVKTKVAITSDRPQTTRHVVRGVVHRPDAQLVVVDTPGL 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + L+ +T+ D++ + + + L E+ + + ++ K Sbjct: 66 HKPRTLLGSRLNDLARATLAEVDVIVFCLPADERIGPGDRFLADELNRIKTPTFAVVTKT 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V+ R+ EQ +L + VSA + + +++ L + LP Y +++D Sbjct: 126 DRVRKPRVAEQLLAVAELGDWAEIVPVSAVTDYQVELLVDLLVARLPEGRPYYPEGEVTD 185 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK--KDGSILIRQVIYVERPSQKKI 258 P AE+ RE L E+P+S VV E+ + +D + + V+YVERPSQK I Sbjct: 186 EPEQVLVAELIREAALGELRDELPHSLAVVVEEMAPRPGRDDLVDVHAVLYVERPSQKPI 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ++G G+ ++ + A+ +I +L V+L L VKV +W DP+ Sbjct: 246 IIGAGGERLREVGSRARHQIEALLGVHVYLDLRVKVAPEWQQDPE 290 >gi|21263583|sp|Q8YYD8|ERA_NOSS1 RecName: Full=GTPase Era Length = 324 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 157/298 (52%), Gaps = 7/298 (2%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 GE++ +F +SG + ++G N GKSTL+N+ VG K++I + QTTR+ +RG Sbjct: 19 GEVSIPQAPPEF-----KSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRG 73 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 IV+ E+Q++F+DTPGI +++++ + I+ D+V VVD + Sbjct: 74 IVTTPEAQLIFVDTPGIHKPHHQLGEVLVKNAKLAIESVDVVLFVVDGAVACGAGDRFIA 133 Query: 124 KEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + + +IL +NK+D P+ + ++++ + T SA G + L Sbjct: 134 DLLIHSKTPVILGINKVDQQPPDSQKIDESYQQLASAYQWPTVKFSAKTGAELPQLQELL 193 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI 242 L P+ Y D ++D P E+ RE++ L +E+P+S + + EE + Sbjct: 194 VEHLEHGPYYYPPDLVTDQPERFIMGELIREQILLLTREEVPHSVAIAIDLVEETPTITR 253 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 ++ I+VER SQK I++GK G +K+I A+++I +++ V+L LFVKVQ W H Sbjct: 254 VL-ATIHVERDSQKGILIGKGGSMLKSIGSAAREQIQKLIAGKVYLELFVKVQPKWRH 310 >gi|153941135|ref|YP_001392222.1| GTP-binding protein Era [Clostridium botulinum F str. Langeland] gi|189037261|sp|A7GHG2|ERA_CLOBL RecName: Full=GTPase Era gi|152937031|gb|ABS42529.1| GTP-binding protein Era [Clostridium botulinum F str. Langeland] gi|295320220|gb|ADG00598.1| GTP-binding protein Era [Clostridium botulinum F str. 230613] Length = 296 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 154/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N + K+SIV+ + QTTR+ ++ I++E Q+VF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++ + +K D+V +++ + +++++ + + L+LNKI Sbjct: 63 HKPKHKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E +I ++L+ E+ +SA KG D + + +P P Y D I D Sbjct: 123 DENPQEKVAETLKIYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIID 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AEI REK L +E+P+ V + ++ + G+ I I E+ S K I++ Sbjct: 183 QNERFIVAEIVREKALRLLSEEVPHGIAVEILQMKKNEKGTYHIEGNILCEKNSHKPIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K IS A+++I L+ V++ L+VKV+++W Sbjct: 243 GKGGSKLKKISQYARQDIEAFLQSKVYIRLWVKVKEEW 280 >gi|126657428|ref|ZP_01728587.1| GTP-binding protein Era [Cyanothece sp. CCY0110] gi|126621415|gb|EAZ92127.1| GTP-binding protein Era [Cyanothece sp. CCY0110] Length = 314 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 155/283 (54%), Gaps = 10/283 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N+ +G K++I + QTTR+ ++GI++ +++QI+F+DTPGI Sbjct: 21 KSGFVGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTEQAQIIFVDTPGI 80 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + K++++ + I D++ VVDS + I DLLK I + +IL L Sbjct: 81 HKPHHTLGKIIVKNAKMAINSVDVILFVVDSSVKSGGGDRYIIDLLKTI---NQPVILGL 137 Query: 138 NKIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK D + E + E L+ + SA G+G + + N L L P+ Y Sbjct: 138 NKQDQ-QSEDYQQIDESYTNLIESYHWPIIKFSALTGNGLETLQNTLIEKLDPGPYYYPP 196 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D I+D P E+ RE++ +E+P+S + EK EE + + I VER SQ Sbjct: 197 DLITDQPERFIMGELIREQILRLTRQEVPHSVAITIEKIEETPKIT-RVFAAINVERSSQ 255 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I++G+ G +K I A+++I +++ V+L LFVKV+ W Sbjct: 256 KGILIGQKGSMLKAIGTAAREQIQKLIAGEVYLKLFVKVESQW 298 >gi|323126738|gb|ADX24035.1| GTP-binding protein Era [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 259 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 141/250 (56%), Gaps = 3/250 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 123 DKVHPDQLLEQIDDFRSQMDFKEVVPISALEGNNVPTLIKLLTDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 183 HPERFLVSEMVREKVLHLTQQEVPHSVAVVVESMKRDEETD-KVHIRTTIMVERDSQKGI 241 Query: 259 MLGKNGQNIK 268 ++GK G +K Sbjct: 242 IIGKQGAMLK 251 >gi|296136815|ref|YP_003644057.1| GTP-binding protein Era [Thiomonas intermedia K12] gi|295796937|gb|ADG31727.1| GTP-binding protein Era [Thiomonas intermedia K12] Length = 301 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 152/285 (53%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VGAKVSI +HK QTTR + G+ + SQ F+DTPG Sbjct: 11 RFGTVAIVGRPNVGKSTLLNALVGAKVSITSHKAQTTRHRILGVTTHGASQFAFVDTPG- 69 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + + ++ M R + D+V V+++ + L + L E+ +I ++N Sbjct: 70 FQTQHMHALNRAMNRTVTGALSEVDLVLWVLEAGKILPQDRTVL--EVLPDDRPVIAVVN 127 Query: 139 KIDCVKP-ERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D + P E+LL AE+ F E M SA K +L+ + L W Y D Sbjct: 128 KLDRITPREKLLPWLAELGQLRKFAEIVPM-SAQKKADAPRLLSIMEPYLHEGEWGYEED 186 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D AEI REKLF E+PY+S VV E++ ++ D I I V+R K Sbjct: 187 ALTDRSERFLAAEILREKLFRLTGDELPYTSTVVIEQFAQEGDLR-RISAAIIVDRDGHK 245 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++G G+ +K IS EA++++ + + PV L ++VK + W D Sbjct: 246 AMVIGAGGERLKRISTEARQDMQVLFDGPVFLEVWVKTRSGWADD 290 >gi|264677119|ref|YP_003277025.1| GTP-binding protein Era [Comamonas testosteroni CNB-2] gi|299530660|ref|ZP_07044075.1| GTP-binding protein Era [Comamonas testosteroni S44] gi|262207631|gb|ACY31729.1| GTP-binding protein Era [Comamonas testosteroni CNB-2] gi|298721176|gb|EFI62118.1| GTP-binding protein Era [Comamonas testosteroni S44] Length = 367 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 158/299 (52%), Gaps = 20/299 (6%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 + + R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI ++ E+Q VF Sbjct: 67 YAPEEQRCGLIAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTKDETQFVF 126 Query: 75 LDTPGIFNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DTPG F K S +K + + I D++ VV++ + L + K Sbjct: 127 VDTPG-FQTKHSTALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVL--SLFKPGIP 183 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCST-L 186 +LI NK+D V +AEIA L +++ F+ + K + + +C+ L Sbjct: 184 TLLIANKLDTVG-----RRAEIAPWLRDMQERHPFAEFVPMSAKNKKDIERMYGICAKYL 238 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK---KDGSIL 243 P PW Y D+++D +E REKLF E+PY+S VV +K+EE+ K G + Sbjct: 239 PQQPWFYGEDELTDRSEKFLASETLREKLFRFTGDELPYTSTVVIDKFEEEPSPKFGRFM 298 Query: 244 -IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I I VER K +++G+ G+ +K IS E ++E+ ++L V L ++VKV+ W D Sbjct: 299 RIAATIVVERDGHKAMVIGQGGERLKRISTETRQELEKLLNAKVFLEVWVKVKSGWADD 357 >gi|192358928|ref|YP_001983040.1| GTP-binding protein Era [Cellvibrio japonicus Ueda107] gi|190685093|gb|ACE82771.1| GTP-binding protein Era [Cellvibrio japonicus Ueda107] Length = 303 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 162/292 (55%), Gaps = 10/292 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI +E + QI+F+DTP Sbjct: 9 NGRCGYVAIVGRPNVGKSTLLNHLLGQKISITSRKPQTTRNAVVGIKTEGDVQIIFVDTP 68 Query: 79 GI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLIL 135 G+ + + ++ M R + + +K +VV N D + + +++ S +IL Sbjct: 69 GLHLGQQKAINRYMNRAASTAMKDV---DVVVFVVDRFIWNEEDDAVAQRLSQVKSPIIL 125 Query: 136 ILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D ++ + LL + ++ + + + +SA + + + + LP +Y Sbjct: 126 AVNKVDQIEDKDSLLPHLQALSEKLNVAEIVPISALRNANLERLEALIVERLPEGVHMYP 185 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 DQI+D AEI REK+ L E+PY V E++ K++GS+L I +I VE+P Sbjct: 186 EDQITDRSSRFMAAEIVREKITRQLGDELPYEMAVEIEEF--KQEGSLLNISALILVEKP 243 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKKI++G G+ IK I +A+ ++ ++ E + L L+VK++ W D + Sbjct: 244 GQKKILIGDKGERIKLIGTQARLDMEKLFEMKIMLKLWVKIKSGWSDDERAL 295 >gi|255994492|ref|ZP_05427627.1| GTP-binding protein Era [Eubacterium saphenum ATCC 49989] gi|255993205|gb|EEU03294.1| GTP-binding protein Era [Eubacterium saphenum ATCC 49989] Length = 301 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 161/280 (57%), Gaps = 4/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE--KESQIVFLDTP 78 +SG ++++G N GKSTL+N +G KV+I T K QTTR+ +RGI ++ ++ Q+VFLDTP Sbjct: 9 KSGFISIIGRPNTGKSTLLNMIIGTKVAIATPKPQTTRNTIRGIFTDNIRDKQMVFLDTP 68 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI K+ + ++ S +++ D+V L+VD +L+ + K +A SS I+++N Sbjct: 69 GIHMPKNKLGEKLVASSRRSMRDVDLVLLLVDERSKLEEE-DKIFKNLASISSPKIIVIN 127 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K+D +KP++ + E ++A G D +L+ + + + Sbjct: 128 KLDVMKPDQFKGLYDYYKTKEGFEAVIGITAKDGKNVDALLDKVALYCNDENIHFPENMY 187 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D +EI REKLF++L KE+P+ V EK++E K G I I VI ER S K I Sbjct: 188 TDQQERFLASEIIREKLFMYLDKEVPFGVAVGIEKFKEMK-GVIDIEAVITCERDSHKGI 246 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK+G+ +K I A+ E+ +I V++ L+V+V+K+W Sbjct: 247 IIGKSGRKLKGIGKSARLELEDIFGVKVNMKLWVRVRKNW 286 >gi|284044305|ref|YP_003394645.1| GTP-binding protein Era [Conexibacter woesei DSM 14684] gi|283948526|gb|ADB51270.1| GTP-binding protein Era [Conexibacter woesei DSM 14684] Length = 300 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 153/286 (53%), Gaps = 6/286 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +RSG VAL G N GKSTL N VGAKV+IV+ K QTTR +RG+ + + Q++ +D P Sbjct: 8 TTRSGFVALAGRPNVGKSTLTNAIVGAKVAIVSDKPQTTRRAIRGVRTTPDHQLILVDLP 67 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILI- 136 G+ +D + M S ++ A ++ + E V D + + KR+ ++I Sbjct: 68 GVQRPRDVLTERMQGRVESELRDA--DAALLLLNAEQGVGPGDRFIAALLKRAPVPVVIA 125 Query: 137 LNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NKID C K E + + A L + F +SA G G ++++L LP P+ + Sbjct: 126 VNKIDRCSKHETAV-VLQAAADLEVADDIFPISARGGQGVQTLVDHLAGLLPPGPYYFPP 184 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 + SD AE+ RE++ +E+P+S V + E+++D I +R V +VE SQ Sbjct: 185 EDRSDQAENVLLAELVREQVLRRTRQEVPHSVEVEVGEIEDREDDLIYVRAVAWVETDSQ 244 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++G G+ I+ I A++E+ L VHL L V+V+K W D Sbjct: 245 KGILIGAGGRMIRAIGTAARRELERELGTRVHLDLTVRVRKSWRTD 290 >gi|159484917|ref|XP_001700498.1| ERA-like protein, small ras-type GTPase [Chlamydomonas reinhardtii] gi|158272250|gb|EDO98053.1| ERA-like protein, small ras-type GTPase [Chlamydomonas reinhardtii] Length = 439 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 156/295 (52%), Gaps = 23/295 (7%) Query: 13 KDFVQD--NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 +D +D RSG VA++G NAGKSTL+N VG K+SIVT+K QTTR V GI+SE++ Sbjct: 147 EDLAEDPPGHRSGYVAVIGKPNAGKSTLINALVGQKLSIVTYKPQTTRHRVMGILSERDY 206 Query: 71 QIVFLDTPGIFNAKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 Q++ DTPG+ K + + M+ +IK ++ + VVDS + K + Sbjct: 207 QMILFDTPGVIEKKRTKLEERMMAAVVHSIKESEAIIAVVDSADKPKEALAMFQPGEGWN 266 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + ++LNK D + E+++ F+ SA G + + S LP Sbjct: 267 GPPMAVLLNKADLLSEEQVV---------------FVGSAEHKDGLGALRAWAVSRLPEG 311 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI---LIRQ 246 P +YS +++ + + + E++FLH +E+PY S V+ +++ E++ S I Sbjct: 312 PTLYSKPRMTRTRL--KSRAVPAERVFLHCEQEVPYCSQVLIKEFTERRTASGQKDFISA 369 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I VE+ SQK I++G G ++ I A+KEI L + V+L L V+V KDW D Sbjct: 370 EIVVEKESQKGILIGAGGSMLRRIGGAARKEIETFLGRGVYLELSVQVDKDWRDD 424 >gi|300858946|ref|YP_003783929.1| putative GTP-binding protein [Corynebacterium pseudotuberculosis FRC41] gi|300686400|gb|ADK29322.1| putative GTP-binding protein [Corynebacterium pseudotuberculosis FRC41] gi|302206647|gb|ADL10989.1| GTP-binding protein era-like protein [Corynebacterium pseudotuberculosis C231] gi|302331196|gb|ADL21390.1| GTP-binding protein era-like protein [Corynebacterium pseudotuberculosis 1002] gi|308276890|gb|ADO26789.1| GTP-binding protein era-like protein [Corynebacterium pseudotuberculosis I19] Length = 305 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 157/289 (54%), Gaps = 7/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG ++ VG N GKSTL N VG K++I ++ +TTR +RGIV ++QI+ +DTPG+ Sbjct: 11 RSGFISFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGIVHRPDAQIIVVDTPGL 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D++ L + + ++ I D +K++A ++ ++ I+ Sbjct: 71 HRPRTLLGERLNEVVKDTYADMDLIGLTIPADEKIGPGDRWILDAVKKVAPKTP-ILGIV 129 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K D V +++ Q ++L+ E + VSA G D +L+ + LP P Y D Sbjct: 130 TKADKVSRDQVAVQLMALHELLGGESEVVPVSAVTGEQRDVLLDVITGLLPEGPKFYPDD 189 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPS 254 ++D AE+ RE L E+P+S V ++ ++++ + + VIYVERP Sbjct: 190 HVTDDDTETRIAELIREAALAGLKDELPHSVAVQIDEILPNDEREDVLDVHAVIYVERPG 249 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++GK+G+ + I A+ E+ +IL Q V L L +KV K+W DPK Sbjct: 250 QKSIIIGKDGRRLGRIIHNARPEVIKILGQNVFLDLRIKVLKNWQQDPK 298 >gi|224531545|ref|ZP_03672177.1| GTP-binding protein Era [Borrelia valaisiana VS116] gi|224511010|gb|EEF81416.1| GTP-binding protein Era [Borrelia valaisiana VS116] Length = 290 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 160/292 (54%), Gaps = 11/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNNIKGIFTDGRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M++ S+I +++ ++D + + +L+ I + +++LNK+ Sbjct: 62 HLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVLLNKV 121 Query: 141 DCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D + + L++ EI + + +SA K +++ N + P Y Sbjct: 122 DLKNTKIKEITQFLKEKEIEDNNI-----IKISAEKKINTEELKNKIYENFSEGPLYYPQ 176 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 + +D + +EI REK +L +E+PYS V + E KK S+ IR I+V SQ Sbjct: 177 EYYTDQKINFRISEIIREKAIENLKEELPYSLYVDIDTLENKKR-SLFIRANIFVANESQ 235 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 K I++GKNG+ IK+I +A+K IA+I E +L L VK++K+W + K + Sbjct: 236 KGIIVGKNGKEIKSIGEKARKTIAKIFETKCNLFLQVKLKKNWNKEDKLIKR 287 >gi|300780720|ref|ZP_07090574.1| GTP-binding protein Era [Corynebacterium genitalium ATCC 33030] gi|300532427|gb|EFK53488.1| GTP-binding protein Era [Corynebacterium genitalium ATCC 33030] Length = 350 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 160/299 (53%), Gaps = 19/299 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I+ + +TTR +RGIV+ ++QIV +DTPG+ Sbjct: 48 RSGFVSFVGRPNTGKSTLTNALVGEKIAIMADQPETTRHPIRGIVNRPDAQIVLVDTPGL 107 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D+V L V ++ ++ I D +KE K ++ ++ I+ Sbjct: 108 HRPRTLLGERLNDVVKDTFADVDVVGLTVPANEKIGPGDRWILDAVKE-TKPNTPIVGIV 166 Query: 138 NKIDCVKPERLLEQ--------AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 K+D +++ EQ E+ + VSAT+ D +++ L LP Sbjct: 167 TKLDAAGKDQVGEQLLKLHDLLTEVTGRDDV--DVVPVSATEQIQLDVLMDVLTKHLPEG 224 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSI----LI 244 P Y ++D AE+ RE+ L E+P+S V + E +E+ DG+ +I Sbjct: 225 PRFYPEGHVTDEDTETRIAELIREEALKGLRDELPHSVAVQIDEMYEDPDDGNTPKRAMI 284 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 V+Y+ERP QK I+ G++G+ + I ++K+I ++L + V+L L +KV K+W DPK Sbjct: 285 YAVMYLERPGQKTIIEGRDGRRLSGIIQRSRKQIIDLLGRNVYLDLRIKVLKNWQSDPK 343 >gi|187250771|ref|YP_001875253.1| GTP-binding protein [Elusimicrobium minutum Pei191] gi|226741214|sp|B2KB94|ERA_ELUMP RecName: Full=GTPase Era gi|186970931|gb|ACC97916.1| GTP-binding conserved hypothetical protein [Elusimicrobium minutum Pei191] Length = 300 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 147/294 (50%), Gaps = 8/294 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 KDF +SG + G NAGKSTL+N G +S V+ K Q TR + + ++ QI Sbjct: 4 KDF-----KSGFAVMAGLPNAGKSTLLNAVAGGLLSAVSPKPQMTRQNIIALSEGEKHQI 58 Query: 73 VFLDTPGIFNAKDSYHKLMI-RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +F+DTPG AK ++M LS + + AD+ V D +E + L+ ++ Sbjct: 59 IFVDTPGFLEAKYKLQEIMKGSLSQALEEDADVAVFVFDPLQEYSAH-KKLISKLQNIKC 117 Query: 132 RLILILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L +++NK D E+L + + ++ L IEKTF +SA + G + + TLP P Sbjct: 118 PLFVLINKADTQPVEKLRKIEEQLKKDLPDIEKTFFISAKQNKGVAEFKTAVAETLPFNP 177 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 + Q +D + AE RE++F KE+PY + V E + E I+ IYV Sbjct: 178 PYFPQGQWTDRWERFYVAEFIREQIFNLYEKEVPYCTYVEVETFTEDLGPKNYIKAKIYV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 ER SQK I++G G +I + + A+K I E L + L L V V+ W KC Sbjct: 238 ERESQKPIIIGSKGSSIAKLRVSAQKRIEEFLGRKYRLELEVSVEPQWRSSKKC 291 >gi|184200941|ref|YP_001855148.1| GTP-binding protein Era [Kocuria rhizophila DC2201] gi|183581171|dbj|BAG29642.1| GTP-binding protein Era [Kocuria rhizophila DC2201] Length = 348 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/341 (28%), Positives = 163/341 (47%), Gaps = 52/341 (15%) Query: 10 NEH-KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 +EH +DF R+G VG N GKSTL N VG KV+I +++ QTTR +RGIV Sbjct: 6 SEHAQDF-----RAGFAVFVGRPNVGKSTLTNALVGRKVAITSNRPQTTRHTIRGIVHRP 60 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + Q++ +DTPG+ + + + + T+ D++ V + +++ + +++ Sbjct: 61 DGQLILVDTPGLHRPRTLLGQRLNDVVAETLGEVDVIGFCVPADQKVGPGDRYIAQQVVA 120 Query: 129 RSSR--LILILNKIDCVKPERLLEQ----AEIANKLVFIEK------------------- 163 R ++ I+ K D V +RL+EQ +E+ ++V E+ Sbjct: 121 AVGRTPVVAIVTKADLVPQDRLMEQLLAVSELGREVVSAERVQREARRRRRDAASSGPSA 180 Query: 164 ----------------TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFT 207 VSA G D++ L S +P++P +Y ++D P Sbjct: 181 PARDRDAAEEEPGWAHVIPVSAADGFQVDELGELLVSLMPVSPPLYPEGDLTDEPEVTMM 240 Query: 208 AEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQVIYVERPSQKKIMLGK 262 E+ RE + E+P+S VV ++ E++ S + + +YVERPSQK I++GK Sbjct: 241 GELIREAALEGVRDELPHSLAVVVDEVSEREGRSAQNPMLDVHASLYVERPSQKAIVIGK 300 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 G ++ I A+ +I +L ++L L VKV K+W DPK Sbjct: 301 RGARLREIGTRARSQIEALLGTRIYLDLHVKVAKEWQRDPK 341 >gi|28199177|ref|NP_779491.1| GTP-binding protein Era [Xylella fastidiosa Temecula1] gi|182681908|ref|YP_001830068.1| GTP-binding protein Era [Xylella fastidiosa M23] gi|32129517|sp|Q87C05|ERA_XYLFT RecName: Full=GTPase Era gi|226741405|sp|B2I605|ERA_XYLF2 RecName: Full=GTPase Era gi|28057283|gb|AAO29140.1| GTP binding protein [Xylella fastidiosa Temecula1] gi|182632018|gb|ACB92794.1| GTP-binding protein Era [Xylella fastidiosa M23] gi|307578163|gb|ADN62132.1| GTP-binding protein Era [Xylella fastidiosa subsp. fastidiosa GB514] Length = 298 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 162/290 (55%), Gaps = 18/290 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A++G N GKSTL N VG K+SIV+++ QTTR + GI + E QI+ +DTPG+ Sbjct: 8 RCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIILVDTPGL 67 Query: 81 FN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILIL 137 K ++LM R + +++ D LV +S E ++LL + ++L++ Sbjct: 68 HREQKHPMNRLMNRTARGSLEDVDAALLVTESTHWNEEDTLAYNLLNDTG---IPVVLVI 124 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEK--TFM----VSATKGHGCDDVLNYLCSTLPLAPW 191 NKID R +++ + L I + TF VSA K G +++ L + LP Sbjct: 125 NKID-----RFKDKSALLPFLTHINENHTFATIHPVSALKRKGLKTLVSDLLALLPEGGP 179 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 ++S D+I+D +E+ RE++ L KE+PY++ V E + E G I +I+VE Sbjct: 180 MFSEDEITDRSQRFLASELVREQVMRQLGKELPYATTVEIEYFTENT-GLFRIGALIWVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 R SQK I++GK G +K I ++A++++ + + V L +V+V+KDW ++ Sbjct: 239 RESQKAIVIGKGGVRLKEIGVKARQQMERLFQTKVFLETWVRVRKDWSNN 288 >gi|302391411|ref|YP_003827231.1| GTP-binding protein Era [Acetohalobium arabaticum DSM 5501] gi|302203488|gb|ADL12166.1| GTP-binding protein Era [Acetohalobium arabaticum DSM 5501] Length = 306 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 163/287 (56%), Gaps = 9/287 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++N +SG V ++G N GKSTL+N +G K++I T K QTTR+ ++ I++ +Q++F+D Sbjct: 10 EENFKSGFVTVIGQPNVGKSTLINHLIGQKIAITTPKKQTTRNKLQCILTRDNAQLIFID 69 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL--- 133 TPG+ KD + M+ ++ +K +++ +VD+ + I DL ++I + S + Sbjct: 70 TPGVHRPKDKMGEYMVDTAYKALKKVELIYFMVDAQK----GITDLERKINNQLSGIQTP 125 Query: 134 -ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 I++LNKID V +L + E +L + VSA G + +++ LP P Sbjct: 126 TIIVLNKIDLVSKAKLKDVIESCRRLGDYAELIPVSAETGENTNTLIDKSIELLPDGPKY 185 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV-IYVE 251 Y D ++D E+ REK+ +E+P+S + + E+++ ++ V IYVE Sbjct: 186 YPEDMVTDQIEQFVITELIREKIMYLTREEVPHSVALEVVQMGERENKDLIDVNVNIYVE 245 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R SQK I++GK G+ +K I A+++I +L ++L L+VKV+KDW Sbjct: 246 RESQKGIIIGKGGKRLKEIGRRAREDIEALLGSQIYLDLWVKVRKDW 292 >gi|156975791|ref|YP_001446698.1| GTP-binding protein Era [Vibrio harveyi ATCC BAA-1116] gi|156527385|gb|ABU72471.1| hypothetical protein VIBHAR_03535 [Vibrio harveyi ATCC BAA-1116] Length = 320 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 168/304 (55%), Gaps = 9/304 (2%) Query: 7 TFFNEHKDFVQ-DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 FF H + +N G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ Sbjct: 10 AFFASHGEVSSPENQHCGFIAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVD 69 Query: 66 SEKESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 +E + Q +++DTPG+ K + ++LM R + S++ ++V +VD + +L Sbjct: 70 TEGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDG-THWTNDDEMVLT 128 Query: 125 EIAKRSSRLILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 ++ K + ++L +NK+D V + E +L +++ K+ F++ +SA G + + ++ Sbjct: 129 KLQKSNFPVVLCVNKVDNVQDRNEVMLHMMDMSKKMDFVD-VVPISAKHGKNIEVLRKHV 187 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDG 240 LP + + + ++D +EI REKL E+PYS V E+++ + DG Sbjct: 188 RDHLPKSTHHFPEEYVTDRSQRFMASEIVREKLMRFTGDELPYSVTVEIERFDYNPETDG 247 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I +I VER QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W Sbjct: 248 -FHINALILVERNGQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWAD 306 Query: 301 DPKC 304 D + Sbjct: 307 DERA 310 >gi|121595569|ref|YP_987465.1| GTP-binding protein Era [Acidovorax sp. JS42] gi|222111790|ref|YP_002554054.1| gtp-binding protein era [Acidovorax ebreus TPSY] gi|120607649|gb|ABM43389.1| GTP-binding protein Era [Acidovorax sp. JS42] gi|221731234|gb|ACM34054.1| GTP-binding protein Era [Acidovorax ebreus TPSY] Length = 337 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 155/295 (52%), Gaps = 20/295 (6%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + +Q VF+DTP Sbjct: 41 GQRCGLIAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTRGATQFVFVDTP 100 Query: 79 GIFNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 G F + S +K + + I D++ VV++ + L + K +LI Sbjct: 101 G-FQTRHSTALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVL--SLFKPGIPTLLI 157 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIE-----KTFMVSATKGHGCDDVLNYLCST-LPLAP 190 NK+D V +AEIA L ++ F+ + K G + L +C LP P Sbjct: 158 ANKLDTVH-----RRAEIAPWLRDMQGRHPFAEFVPMSAKNKGDIERLYGICEKYLPEQP 212 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS----ILIRQ 246 W Y+ D+++D +E REKLF E+PY+S VV +K++E+K I I Sbjct: 213 WWYAEDELTDRSEKFLASETVREKLFRFTGDELPYTSTVVIDKFDEEKSKQHKRFIRIAA 272 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I VER K +++G+ G+ +K IS EA++E+ ++++ V L ++VKV+ W D Sbjct: 273 TIVVERDGHKAMVIGEKGERLKRISTEARQELEKLMDAKVFLEVWVKVRSGWADD 327 >gi|121605951|ref|YP_983280.1| GTP-binding protein Era [Polaromonas naphthalenivorans CJ2] gi|120594920|gb|ABM38359.1| GTP-binding protein Era [Polaromonas naphthalenivorans CJ2] Length = 357 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 155/295 (52%), Gaps = 29/295 (9%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG KVSI + K QTTR + G+ + +Q VF+DTPG Sbjct: 68 RCGLIAIVGKPNVGKSTLLNALVGQKVSITSRKAQTTRHRITGMRTRAATQFVFVDTPG- 126 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-----LLKEIAKRSSRL 133 F + ++ ++ + R + D++ VV++ + N+ D LL E + Sbjct: 127 FQTRHGNALNRSLNRTVVGAVNDVDLIVFVVEAG---QFNLADAKVLALLPE----KTPA 179 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLP 187 IL+ NK D + +AEIA L +++ +SA + + LP Sbjct: 180 ILLANKFDLIH-----RRAEIAPWLRAMQERHNFSEFVPMSANNAKDVERLFGICEKYLP 234 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQ 246 + PW+Y AD+++D AEI REKLF E+PY+S VV EK+EE +G++ I Sbjct: 235 VQPWMYGADELTDRSDRFMAAEIIREKLFRLTGDELPYTSTVVIEKYEE--EGNLRRIAA 292 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I VER K +++G+ G+ +K I EA+ E+ + V L ++VKV+ W D Sbjct: 293 TIIVERDGHKGMIIGEKGEKLKRIGTEARHELETLTGGKVFLEIWVKVRSGWADD 347 >gi|221068687|ref|ZP_03544792.1| GTP-binding protein Era [Comamonas testosteroni KF-1] gi|220713710|gb|EED69078.1| GTP-binding protein Era [Comamonas testosteroni KF-1] Length = 367 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 158/299 (52%), Gaps = 20/299 (6%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 + + R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI ++ E+Q VF Sbjct: 67 YAPEEQRCGLIAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTKDETQFVF 126 Query: 75 LDTPGIFNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DTPG F K S +K + + I D++ VV++ + L + K Sbjct: 127 VDTPG-FQTKHSTALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVL--SLFKPGIP 183 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCST-L 186 +LI NK+D V +AEIA L +++ F+ + K + + +C+ L Sbjct: 184 TLLIANKLDTVG-----RRAEIAPWLRDMQERHPFAEFVPMSAKNKKDIERMYGICAKYL 238 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK---KDGSIL 243 P PW Y D+++D +E REKLF E+PY+S VV +K+EE+ K G + Sbjct: 239 PQQPWFYGEDELTDRSEKFLASETLREKLFRFTGDELPYTSTVVIDKFEEEPSPKFGRFM 298 Query: 244 -IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + I VER K +++G+ G+ +K IS E ++E+ ++L V L ++VKV+ W D Sbjct: 299 RVAATIVVERDGHKAMVIGQGGERLKRISTETRQELEKLLNAKVFLEVWVKVKSGWADD 357 >gi|296315047|ref|ZP_06864988.1| GTP-binding protein Era [Neisseria polysaccharea ATCC 43768] gi|296838255|gb|EFH22193.1| GTP-binding protein Era [Neisseria polysaccharea ATCC 43768] Length = 311 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 158/287 (55%), Gaps = 11/287 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 21 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 80 Query: 81 FNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 D + L RL+ + + D V VV++ R + +LK++ K + +IL++ Sbjct: 81 --QTDHRNALNDRLNQNVTEALGGVDAVVFVVEAMRFTDAD-RVVLKQLPKHTP-VILVV 136 Query: 138 NKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 NKID K +R + +A VSA G ++L + LP + +Y Sbjct: 137 NKIDKDKAKDRYALETFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYP 196 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V++ S Sbjct: 197 EDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVDKES 255 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 256 QKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 302 >gi|206559399|ref|YP_002230160.1| GTP-binding protein Era [Burkholderia cenocepacia J2315] gi|206561199|ref|YP_002231964.1| GTP-binding protein Era [Burkholderia cenocepacia J2315] gi|198035437|emb|CAR51313.1| GTP-binding protein Era 2 [Burkholderia cenocepacia J2315] gi|198037241|emb|CAR53163.1| GTP-binding protein Era 1 [Burkholderia cenocepacia J2315] Length = 299 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 156/285 (54%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D++ V+++ R + +L I L LI N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDVILFVIEAGR-FGPDDQKVLDLIPPGMPTL-LIAN 126 Query: 139 KIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V + L + ++L + +SA K +L+ + LP +Y D+ Sbjct: 127 KIDRVNDKASLFPFMQKVSELREFTELVPLSAQKPEDIKRLLDTIKPYLPEGEPIYGEDE 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+EE +G + I I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVLIDKFEE--EGRLKRIFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G+ +K IS EA+ ++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGEKLKQISTEARMDMEKLFDGPVYLETFVKVKSGWADN 289 >gi|107022211|ref|YP_620538.1| GTP-binding protein Era [Burkholderia cenocepacia AU 1054] gi|116689157|ref|YP_834780.1| GTP-binding protein Era [Burkholderia cenocepacia HI2424] gi|254245910|ref|ZP_04939231.1| GTP-binding protein Era [Burkholderia cenocepacia PC184] gi|105892400|gb|ABF75565.1| GTP-binding protein Era [Burkholderia cenocepacia AU 1054] gi|116647246|gb|ABK07887.1| GTP-binding protein Era [Burkholderia cenocepacia HI2424] gi|124870686|gb|EAY62402.1| GTP-binding protein Era [Burkholderia cenocepacia PC184] Length = 299 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 156/285 (54%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D++ V+++ R + +L I L LI N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDVILFVIEAGR-FGPDDQKVLDLIPPGMPTL-LIAN 126 Query: 139 KIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V + L + ++L + +SA K +L+ + LP +Y D+ Sbjct: 127 KIDRVNDKATLFPFMQKVSELREFTELVPLSAQKPEDIKRLLDTIKPYLPEGEPIYGEDE 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+EE +G + I I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVLIDKFEE--EGRLKRIFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G+ +K IS EA+ ++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGEKLKQISTEARMDMEKLFDGPVYLETFVKVKSGWADN 289 >gi|160900692|ref|YP_001566274.1| GTP-binding protein Era [Delftia acidovorans SPH-1] gi|160366276|gb|ABX37889.1| GTP-binding protein Era [Delftia acidovorans SPH-1] Length = 344 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 156/293 (53%), Gaps = 20/293 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI S +Q +F+DTPG Sbjct: 50 RCGLIAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRSRAATQFIFVDTPG- 108 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F K S +K + + I D++ VV++ + + L + K +LI N Sbjct: 109 FQTKHSTALNKSLNKTVMGAIGDVDLILFVVEAGQFTLADAKVL--SLFKPGIPTLLIAN 166 Query: 139 KIDCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCST-LPLAPWV 192 K+D V +AEIA L +++ F+ + K G + L +C LP W+ Sbjct: 167 KLDTVG-----RRAEIAPWLKSMQERHPFAEFVPMSAKSKGDIERLFGICEKYLPEQDWM 221 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS----ILIRQVI 248 Y+ D+++D +E REKLF E+PY+S VV +K+EE+ I + I Sbjct: 222 YAPDELTDRSEKFLASETVREKLFRFTGDELPYTSTVVIDKFEEEASKQHKRFIRVAATI 281 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER K +++G+ G+ +K IS EA++E+ ++++ V L ++VKV+ W D Sbjct: 282 VVERDGHKAMIIGEKGERLKRISTEARQELEKLMDAKVFLEVWVKVRSGWADD 334 >gi|255079458|ref|XP_002503309.1| predicted protein [Micromonas sp. RCC299] gi|226518575|gb|ACO64567.1| predicted protein [Micromonas sp. RCC299] Length = 365 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/288 (31%), Positives = 141/288 (48%), Gaps = 23/288 (7%) Query: 32 NAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA---KDSYH 88 NAGKS LVN VGA++ V+ K TTR G V+ ++Q V LD PG+ ++ H Sbjct: 61 NAGKSQLVNTLVGAQICAVSAKTNTTRVETLGAVTRGDAQAVLLDLPGVVGPEHYRNPTH 120 Query: 89 KLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRL------------ 133 + +W+ D++ +VD++R+ + + DLL RL Sbjct: 121 ATKVSSAWAAAAQCDLLLFIVDANRQARRPDPRVVDLLASARANLERLKYTEVTGLSMPP 180 Query: 134 -ILILNKIDCVKPERLLEQ-AEIANKLVFI---EKTFMVSATKGHGCDDVLNYLCSTLPL 188 +L LNK+D + E +A L + E F +SA KG G D +L++L PL Sbjct: 181 AVLALNKVDLFRGAEDREALKRVARALAAVHPFEDIFPISAAKGRGTDALLSHLLLRAPL 240 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 PW ++D M E+ RE ++ LH+E+PYS V + W DGS I Q + Sbjct: 241 RPWDLPPSAVTDKSMVDQAIEVVRESVYRRLHQELPYSIVPVHDSWTNFDDGSYRIEQTL 300 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 V+ K+I++G G I I + A+ + ++ + VHL+L VKV+K Sbjct: 301 VVDSVPMKQIVVGTRGSVIGQIGIRARTVLEKMFSRRVHLVLNVKVRK 348 >gi|317056494|ref|YP_004104961.1| GTP-binding protein Era [Ruminococcus albus 7] gi|315448763|gb|ADU22327.1| GTP-binding protein Era [Ruminococcus albus 7] Length = 298 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 154/280 (55%), Gaps = 7/280 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N VG K++ V+ K QTTR+ + G++++ E+Q VF+DTPG+ AK Sbjct: 7 VTIAGRANAGKSSLLNALVGEKIAAVSDKPQTTRTKITGVLTKGETQFVFMDTPGMHKAK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV- 143 + + M+ TI D++ + D +++ N L++ S++IL LNKID + Sbjct: 67 NKLSEHMVNTVNETITGVDMIIFMCDCTKKISDNEKSLIESFKGGKSKVILALNKIDLLD 126 Query: 144 -KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 K + +++ +E + F E +S G D +++ L P + D+ +D P Sbjct: 127 NKEDVIVKLSEYSALYDFAE-VVPISVVGNDGLDIIMDILEKNAAEGPHYFPDDKFTDQP 185 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS----ILIRQVIYVERPSQKKI 258 AE+ REK +L+ E+P+ V E+ E++D + + I I+ ER S K I Sbjct: 186 EKVIMAEMIREKALRNLNDEVPHGVAVTIEQLGEREDRNGEAILDITATIFCERESHKGI 245 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G ++ I +A++++ + + V+L +VKV++ W Sbjct: 246 IIGKGGSMLRKIGQDARRDLEDFFQIKVNLQCWVKVKEGW 285 >gi|307637195|gb|ADN79645.1| GTP-binding protein [Helicobacter pylori 908] gi|325995784|gb|ADZ51189.1| GTP-binding protein [Helicobacter pylori 2018] gi|325997380|gb|ADZ49588.1| GTP-binding protein [Helicobacter pylori 2017] Length = 301 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/292 (34%), Positives = 161/292 (55%), Gaps = 15/292 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L L+KID +++L++ + K F++ +SA K + +L + L + W+ Sbjct: 119 LALSKIDTATHKQVLQKLQEYQKYASQFLD-LVPLSAKKSQNLNALLECISKHLSPSAWL 177 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVE 251 + D +SD M EI RE LF L EIPY S V+ +K+ EE++ + R I VE Sbjct: 178 FEKDLMSDEKMCDIYKEIIRESLFDFLSDEIPYESDVIIDKFIEEERIDKVYAR--IIVE 235 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 + SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 236 KESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|114331754|ref|YP_747976.1| GTP-binding protein Era [Nitrosomonas eutropha C91] gi|122313495|sp|Q0AF71|ERA_NITEC RecName: Full=GTPase Era gi|114308768|gb|ABI60011.1| GTP-binding protein Era [Nitrosomonas eutropha C91] Length = 296 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/285 (31%), Positives = 164/285 (57%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +++VG N GKSTL+N + K+SI + K QTTR + GI+++ +SQ +F+DTPG Sbjct: 7 KAGYISIVGRPNVGKSTLLNHLIKQKISITSRKAQTTRHRIHGILTDVQSQFIFVDTPGF 66 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +++M R+ +++ D++ V+++ R + + L E R+ +IL++NK Sbjct: 67 QMRHRSQLNQVMNRVVLQSMQDVDVILFVLEAGRFGREDEQVL--EQLPRNLPVILVINK 124 Query: 140 IDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID + P++ LL + L VSA + D+ + LP P V++ D+ Sbjct: 125 IDLL-PDKLQLLPFMQKMADLFDFADIVPVSALQNRQLSDLTEVIRHYLPENPPVFTEDE 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 I+D AE+ REK+F + +E+PYS V+ E++ +G++ I I VER +QK Sbjct: 184 ITDRSERFLAAELLREKVFRQIGEEVPYSVSVIIEQF--AVEGNLRRIHACILVERENQK 241 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK G+ +K ++ +A+K++ + + V+L ++VKV+ W D Sbjct: 242 AIIIGKQGKKLKDMATQARKDMEVLFDGKVYLEIWVKVKSGWADD 286 >gi|226940390|ref|YP_002795464.1| GTP-binding protein Era [Laribacter hongkongensis HLHK9] gi|226715317|gb|ACO74455.1| GTP-binding protein [Laribacter hongkongensis HLHK9] Length = 298 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 169/300 (56%), Gaps = 17/300 (5%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R G VA+VG N GKSTL+N +G K+SI + K QTTR V GI + +++Q +F+DTP Sbjct: 8 DYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHRVTGIETREDAQFIFVDTP 67 Query: 79 GIFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 G +++ + ++ + T+ D V +V+++ + L ++L + K ++ ++ Sbjct: 68 GFQTRHRNALNDVLNQSVRQTLADVDCVLMVLEAGK-LGPADQEVLNLLPKNRP-VVAVI 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM------VSATKGHGCDDVLNYLCSTLPLAPW 191 NK D RL ++AE+A LV + + F V A G D++L + LP + Sbjct: 126 NKSD-----RLKDKAEMAGFLVKVSEAFAFADIIPVCAKHGQRLDELLKLVQPHLPQSVP 180 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYV 250 +Y D ++D AEI REKLF +L +E+PYS V TE +E +G++ I + V Sbjct: 181 LYPEDMVTDKNEKFLAAEIVREKLFRYLGEELPYSMNVETELFE--VEGALRKIYVTVLV 238 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQREI 310 ++ QK I++GK+G+ +K IS EA+ ++ ++ + V L ++VKV+ W D + Q E+ Sbjct: 239 DKVGQKSIVIGKDGEKLKRISTEARLDMEKLFDGKVFLKVWVKVKGGWADDVRFLKQFEL 298 >gi|307330989|ref|ZP_07610120.1| GTP-binding protein Era [Streptomyces violaceusniger Tu 4113] gi|306883375|gb|EFN14430.1| GTP-binding protein Era [Streptomyces violaceusniger Tu 4113] Length = 352 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/317 (32%), Positives = 161/317 (50%), Gaps = 19/317 (5%) Query: 3 MGEITFFNEHKDFVQDNS--RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 MG +T Q + RSG VG NAGKSTL N VG KV+I +++ QTTR Sbjct: 32 MGSMTAGTPPSPTEQRETPHRSGFACFVGRPNAGKSTLTNALVGTKVAITSNRPQTTRHT 91 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKV 117 VRGIV ++Q+V +DTPG+ + + + +R +W+ + D++ + + ++L Sbjct: 92 VRGIVHRPDAQLVLVDTPGLHKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGP 148 Query: 118 NIHDLLKEIAK-RSSRLILILNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATK 171 + E+A + + I I+ K D V+ ++L EQ + +L F + VSA Sbjct: 149 GDRYIATELAGIKKTPKIAIVTKTDLVESKQLAEQLIAIDRLGTELGFEWAEIVPVSAVG 208 Query: 172 GHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVT 231 + + L LP P +Y ++D P AE+ RE + E+P+S VV Sbjct: 209 DKQVGLLADLLVPLLPEGPTLYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVV 268 Query: 232 EKWEEKKDGS-----ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPV 286 E+ ++D + I +Y+ERPSQK I++G G+ +K + +++K I +L PV Sbjct: 269 EEMLPREDRPADRPLLDIHANLYIERPSQKGIIIGPKGRRLKEVGTKSRKHIEALLGTPV 328 Query: 287 HLILFVKVQKDWGHDPK 303 L L VKV KDW DPK Sbjct: 329 FLDLHVKVAKDWQRDPK 345 >gi|240122944|ref|ZP_04735900.1| GTP-binding protein Era [Neisseria gonorrhoeae PID332] Length = 307 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 159/289 (55%), Gaps = 9/289 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 14 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDT 73 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLIL 135 PG D + L RL+ + + V +VV +++ D +LK++ K + +IL Sbjct: 74 PGF--QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRLTDADRVVLKQLPKHTP-VIL 130 Query: 136 ILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ++NKID K +R +A +A VSA G ++L L LP + + Sbjct: 131 VINKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELLKPYLPESVPM 190 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D ++D EI REKLF +L +E+PY+ V E++EE DG I + V++ Sbjct: 191 YPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-GDGLNRIYIAVLVDK 249 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 250 ESQKAILIGKGGERLKKISTEARLDMEKLFDNKVFLKVWVKVKSGWADD 298 >gi|326316028|ref|YP_004233700.1| GTP-binding protein Era [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372864|gb|ADX45133.1| GTP-binding protein Era [Acidovorax avenae subsp. avenae ATCC 19860] Length = 349 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 155/293 (52%), Gaps = 20/293 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + + +Q VF+DTPG Sbjct: 55 RCGLIAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTREGTQFVFVDTPG- 113 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S +K + + I D++ VV++ + L + K +LI N Sbjct: 114 FQTRHSTALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVL--SLFKPGIPTLLIAN 171 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT-----FMVSATKGHGCDDVLNYLCST-LPLAPWV 192 K+D V +AEIA L +++ F+ + K G + L +C+ LP PW Sbjct: 172 KLDEVH-----RRAEIAPWLKGMQERHPFAEFVPMSAKNKGDIERLFGICAKYLPEQPWF 226 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS----ILIRQVI 248 Y D+++D +E REKLF E+PY+S VV +K EE+ + I + I Sbjct: 227 YGEDELTDRSEKFLASETVREKLFRFTGDELPYTSTVVIDKMEEEPSKTHKRFIRVAATI 286 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER S K +++G G+ +K IS EA++E+ +++ V L ++VKV+ W D Sbjct: 287 VVERDSHKAMVIGDKGERLKRISTEARQEMERLMDAKVFLEVWVKVRSGWADD 339 >gi|332525372|ref|ZP_08401535.1| putative GTP-binding protein [Rubrivivax benzoatilyticus JA2] gi|332108644|gb|EGJ09868.1| putative GTP-binding protein [Rubrivivax benzoatilyticus JA2] Length = 329 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/292 (33%), Positives = 154/292 (52%), Gaps = 13/292 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + +Q VF+DT Sbjct: 33 EGQRCGLIAIVGRPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTVGATQFVFVDT 92 Query: 78 PGIFNA-----KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 PG + +K + R +++ D V +V++ R ++ +L + Sbjct: 93 PGFQTTHLKRHSGAMNKTLNRTVTASVADVDAVLFMVEAGR-FGLDDAKVLALLPP-DKP 150 Query: 133 LILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +IL+ NK+D V + + L + + F E M SAT + + + LP P Sbjct: 151 VILVANKLDAVRRRTDILPWLKSMQERHAFAEYVPM-SATTAADVERLFAIVEPHLPEQP 209 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIY 249 W Y D ++D +EI REKLF E+PYSS VV EK+EE +G++ I I Sbjct: 210 WFYEEDALTDRSDRFLASEIVREKLFRLTGDELPYSSTVVIEKFEE--EGNLRRIAATIV 267 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER + K +++G+ G+ +K I E+++E+ +L+ V L L+VKV+ W D Sbjct: 268 VERDAHKGMVIGEGGERLKRIGTESRQELERLLDAKVFLELWVKVRSGWADD 319 >gi|86608744|ref|YP_477506.1| GTP-binding protein Era [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557286|gb|ABD02243.1| GTP-binding protein Era [Synechococcus sp. JA-2-3B'a(2-13)] Length = 361 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 150/281 (53%), Gaps = 6/281 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG AL+G N GKSTL+N VG KV+I + QTTR+ ++GI+S ++QI+++DTPGI Sbjct: 67 KSGFAALIGRPNVGKSTLLNALVGQKVAITSPVAQTTRNRLQGILSLPQAQIIWVDTPGI 126 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNK 139 ++++ + + I D++ VVD + D + E +S +++ NK Sbjct: 127 HKPHHRLGEILVHNAQAAIAAVDVILFVVDG--SVPAGRGDAFIAERIPAASPCLIVCNK 184 Query: 140 IDCVKPERLLEQA--EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + + + QA E L VSA ++ LP P+ Y D Sbjct: 185 ADLLPRDAAVRQAHQESYQALRPGAPVVWVSALDPSSLTPLIQATIDLLPTGPYYYPPDL 244 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P AE+ RE++ L +E+P+S V ++ EE + + ++ +YVER SQK Sbjct: 245 VTDQPERFIMAELIREQVLLQTREEVPHSVAVTIDQVEETPNVTRIL-ATLYVERDSQKG 303 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K I A+ +I +++ V+L LFVKV+ W Sbjct: 304 ILIGKGGERLKRIGQAARLQIQKLILGKVYLELFVKVRPHW 344 >gi|326504644|dbj|BAK06613.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 303 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 122/206 (59%), Gaps = 9/206 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RSG VA++G N GKSTL+N+ VG K+SIVT K QTTR + GI SE E QI+ DTP Sbjct: 99 NHRSGYVAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDTP 158 Query: 79 GIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSR-- 132 G+ K HKL M++ S I +AD V +V D+ + + I D+L+E + + ++ Sbjct: 159 GVI--KKEMHKLDSMMMKNVQSAIGNADCVIVVADASK-VPEKIDDMLEEGVGNKETKVP 215 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ++L+LNK D +KP + ++ E K ++ +SA GHG DD+ ++ S LPL P Sbjct: 216 VVLVLNKKDMIKPGEIAKKLEWYQKFTDVDDVIPISAKFGHGVDDIKEWILSKLPLGPAY 275 Query: 193 YSADQISDLPMFHFTAEITREKLFLH 218 Y D S+ P F EI REK+FL Sbjct: 276 YPKDIASEHPERFFVGEIVREKIFLQ 301 >gi|268681563|ref|ZP_06148425.1| GTPase [Neisseria gonorrhoeae PID332] gi|268621847|gb|EEZ54247.1| GTPase [Neisseria gonorrhoeae PID332] Length = 313 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 159/289 (55%), Gaps = 9/289 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 20 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDT 79 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLIL 135 PG D + L RL+ + + V +VV +++ D +LK++ K + +IL Sbjct: 80 PGF--QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRLTDADRVVLKQLPKHTP-VIL 136 Query: 136 ILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ++NKID K +R +A +A VSA G ++L L LP + + Sbjct: 137 VINKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELLKPYLPESVPM 196 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D ++D EI REKLF +L +E+PY+ V E++EE DG I + V++ Sbjct: 197 YPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-GDGLNRIYIAVLVDK 255 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 256 ESQKAILIGKGGERLKKISTEARLDMEKLFDNKVFLKVWVKVKSGWADD 304 >gi|260771274|ref|ZP_05880201.1| GTP-binding protein Era [Vibrio furnissii CIP 102972] gi|260613871|gb|EEX39063.1| GTP-binding protein Era [Vibrio furnissii CIP 102972] gi|315179119|gb|ADT86033.1| GTP-binding protein Era [Vibrio furnissii NCTC 11218] Length = 321 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/291 (31%), Positives = 160/291 (54%), Gaps = 6/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 DN G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ ++ + Q +++DT Sbjct: 23 DNQHCGFVAIVGRPNVGKSTLLNNILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDT 82 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V VV+ + +L ++ + ++L Sbjct: 83 PGLHIEEKRAINRLMNRAASSSLSDVNLVFFVVEG-THWTADDEMVLNKLKNANFPVVLC 141 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D VK +L E++NK+ F++ +SA G + + ++ LP A + Sbjct: 142 VNKVDNVKDRNDVMLHMMELSNKMDFVD-VVPISAKLGKNVEVLRKHVRDHLPKAVHHFP 200 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ D I +I VER Sbjct: 201 EEYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERI 260 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G+ IKTI +A+ ++ E+ + V+L +VKV+ W D + Sbjct: 261 GQKKMVIGNKGEKIKTIGSQARLDMEELFGRKVYLETWVKVKSGWADDERA 311 >gi|306818072|ref|ZP_07451803.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35239] gi|304649036|gb|EFM46330.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35239] Length = 303 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 153/290 (52%), Gaps = 5/290 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 ++ R+G VA++G N GKSTL+N VG K++I + + +TTR + RGIV Q+V +DT Sbjct: 12 EDFRAGFVAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVDT 71 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL--IL 135 PGI + + + D++ V + +E+ ++ E R++R+ + Sbjct: 72 PGIHRPRTLLGQRLNDRVEEAQADVDLLVFCVPADQEIGPGDRRIV-EKQLRANRIPALA 130 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++ K D P ++ Q N+L + VSA +G + +++ L +PL+P +Y A Sbjct: 131 VVTKTDVATPNQIAAQLLALNELYDFREIVPVSAVQGKQVELLIDLLGGLMPLSPPLYPA 190 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 Q SD AE+ RE L +E+P+S V E+ K I++ ++VER SQ Sbjct: 191 GQDSDEDDEVMIAELIREAALEGLGQELPHSLAVQVEEIIRDKTWRIVVN--LFVERDSQ 248 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++G+ G +K I + A+ +I +L + V+L L V+ KDW DPK Sbjct: 249 KSIIIGRKGGRLKEIGMRARPQIEALLNRHVYLDLHVRTAKDWQKDPKML 298 >gi|3676071|emb|CAA76979.1| ERG protein [Arabidopsis thaliana] Length = 375 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 140/255 (54%), Gaps = 7/255 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ +S V ++G NAGKS+L N VG KV+ + K TT V G++++ ++Q+ F D Sbjct: 117 EEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVAAASRKTNTTTHEVLGVLTKGDTQVCFFD 176 Query: 77 TPGIFNAKDSYH----KLMIRLSWSTIKHADIVCLVVDSHRELK--VNIHDLLKEIAKRS 130 TPG+ K Y K ++ +W+++ D++ ++ D HR L V + + E Sbjct: 177 TPGLMLKKSGYGYKDIKARVQNAWTSVDLFDVLIVMFDVHRHLMRVVRLIKYMGEEENPK 236 Query: 131 SRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + +L +NK+D V K + LL+ AE L E+ FM+S KG G D+ YL Sbjct: 237 QKRVLCMNKVDLVEKKKDLLKVAEEFQDLPAYERYFMISGLKGSGVKDLSQYLMDQAVKK 296 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 PW A +S+ + + + E+ RE+L H+H+EIPY W+E +DGS+ I Q + Sbjct: 297 PWEEDAFTMSEEVLKNISLEVVRERLLDHVHQEIPYGLEHRLVDWKELRDGSLRIEQHLI 356 Query: 250 VERPSQKKIMLGKNG 264 + SQ+KI++GK G Sbjct: 357 TPKLSQRKILVGKGG 371 >gi|125973582|ref|YP_001037492.1| GTP-binding protein Era [Clostridium thermocellum ATCC 27405] gi|256003401|ref|ZP_05428392.1| GTP-binding protein Era [Clostridium thermocellum DSM 2360] gi|281417787|ref|ZP_06248807.1| GTP-binding protein Era [Clostridium thermocellum JW20] gi|125713807|gb|ABN52299.1| GTP-binding protein Era [Clostridium thermocellum ATCC 27405] gi|255992691|gb|EEU02782.1| GTP-binding protein Era [Clostridium thermocellum DSM 2360] gi|281409189|gb|EFB39447.1| GTP-binding protein Era [Clostridium thermocellum JW20] gi|316940176|gb|ADU74210.1| GTP-binding protein Era [Clostridium thermocellum DSM 1313] Length = 297 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 154/281 (54%), Gaps = 4/281 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+N+F G K++I++ K QTTR+ +R I + ++ QI+++DTPGI Sbjct: 4 KSGFVSIVGRPNVGKSTLLNKFTGEKIAIMSDKPQTTRNTIRAIDTGEDYQIIYIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 K M+ ++ ++ D+V +V++ + DL ++++ + + ++N Sbjct: 64 HKPKTKLGDFMVNIALDSLNEVDLVLFLVEATCP-QPGPGDLYIIEQLKNLKTPVFCLIN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 KID V+ E++L + + +SA + + V N + LP P + D I Sbjct: 123 KIDLVEKEQILPIIAAYKDTMEFSQIIPISALEYESVEVVKNEIKKVLPEGPKYFPDDMI 182 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D P AE+ REK+ L E+P+ V ++++ D IL I+ IY E+ S K Sbjct: 183 TDQPEKVIAAELIREKILHLLSDEVPHGVGVEVVTFKKRDDKDILDIQATIYCEKESHKG 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K I ++ EI + V L L+VKV+ DW Sbjct: 243 ILIGKEGKMLKKIGSLSRAEIEGLFGTKVFLELWVKVKPDW 283 >gi|269120355|ref|YP_003308532.1| GTP-binding protein Era [Sebaldella termitidis ATCC 33386] gi|268614233|gb|ACZ08601.1| GTP-binding protein Era [Sebaldella termitidis ATCC 33386] Length = 293 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 90/273 (32%), Positives = 151/273 (55%), Gaps = 4/273 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG +A+VG N GKST++N+ + KV+IV++K TTR ++GIV++ E+Q +F+DTPGI Sbjct: 3 SGFIAIVGRPNVGKSTMMNKLIEEKVAIVSNKSGTTRDRIKGIVNKGENQYIFMDTPGIH 62 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + M ++ T+K D + ++D +E+ + + ++ ++L++NKID Sbjct: 63 KPRHLLGEHMTNVALETLKGVDAIMFLLDGTQEISTGDEFVNDHVKAVNTPVVLVINKID 122 Query: 142 CVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + + ++ EI KL +K ++A G G + + L L W Y D +D Sbjct: 123 KLSDQEIQDKLLEIKEKLGDFDKIITIAAEYGIGMHKIYDELREYLTSDVWYYPEDMYTD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 + + EI REKL + EIP+S + + + K I IYVER SQK I+ Sbjct: 183 ISINKMIREIVREKLLFYTKDEIPHSIAIEIIDIDNTPKLARYDIN--IYVERDSQKGII 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFV 292 +GK+G +K + EA+ EI +LE+ V L L+V Sbjct: 241 IGKDGNLLKKVGREARLEIENLLEKKVFLNLWV 273 >gi|291296458|ref|YP_003507856.1| GTP-binding protein Era [Meiothermus ruber DSM 1279] gi|290471417|gb|ADD28836.1| GTP-binding protein Era [Meiothermus ruber DSM 1279] Length = 313 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 156/305 (51%), Gaps = 25/305 (8%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 + + SG VA+VG N GKSTLVN +G K++ ++ K QTTR VRGI +E QIVF+D Sbjct: 12 EGTTYSGFVAVVGKPNVGKSTLVNTMLGVKIAPISPKPQTTRKRVRGIHTEGNRQIVFVD 71 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---- 132 TPG A D+ + MIR + ++V +VD H+ E+ R+ R Sbjct: 72 TPGWHEASDALSEYMIRQITEALAEVNLVLWLVDLRHP---PTHE--DELVARALRPMKD 126 Query: 133 ---LILILNKIDCVK-PERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +IL+ NK D + PE L+ AE+ L +T M+SA + + + S LP Sbjct: 127 QVPIILVGNKADAARYPEAALQAYAELLPGL----ETRMISAQNERDAKALRDEILSLLP 182 Query: 188 LAPWVYSADQI-SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK------KDG 240 P+ + D D + AEI RE+ L +EIPYS TE +E + G Sbjct: 183 EGPFFFPEDYAKGDQTPEEWAAEIVREEAMKRLKEEIPYSIATKTEAFELRPAPAGGGGG 242 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + I+ IYVER + K I++G G+ +K I A+K++ L + V+L L VKV +W Sbjct: 243 TFYIQVNIYVERENHKPILIGAGGRKLKEIGAAARKQLEVFLARKVYLDLQVKVYPNWRK 302 Query: 301 DPKCC 305 DP+ Sbjct: 303 DPEAL 307 >gi|294629274|ref|ZP_06707834.1| GTP-binding protein Era [Streptomyces sp. e14] gi|292832607|gb|EFF90956.1| GTP-binding protein Era [Streptomyces sp. e14] Length = 320 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 161/298 (54%), Gaps = 19/298 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q++ +DTPG+ Sbjct: 20 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPDAQLILVDTPGL 79 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLIL 135 + + + +R +W+ + D++ + + +++ + KE+A KR+ + + Sbjct: 80 HKPRTLLGERLNDVVRATWAEV---DVIGFCLPADQKIGPGDRFIAKELAGIKRTPK-VA 135 Query: 136 ILNKIDCVKPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 I+ K D V + L EQ ++L + + VSAT G D + + L LP P Sbjct: 136 IVTKTDLVDSKALAEQLIAIDQLGKELGITWAEIVPVSATAGKQVDLLADLLIPLLPEGP 195 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIR 245 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 196 ALYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIH 255 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++ERPSQK I++G G+ +K + ++++K+I +L PV L L VKV KDW DPK Sbjct: 256 ANVFIERPSQKGIIIGPKGKRLKEVGIKSRKQIEALLGTPVFLDLHVKVAKDWQRDPK 313 >gi|325129783|gb|EGC52591.1| GTP-binding protein Era [Neisseria meningitidis OX99.30304] Length = 307 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 159/289 (55%), Gaps = 9/289 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 14 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDT 73 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLIL 135 PG D + L RL+ + + V +VV ++ D +LK++ K + +IL Sbjct: 74 PGF--QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTP-VIL 130 Query: 136 ILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ++NKID K +R +A +A VSA G ++L L LP + + Sbjct: 131 VVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELLKPYLPESVPM 190 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V++ Sbjct: 191 YPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVDK 249 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 250 ESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 298 >gi|160945169|ref|ZP_02092395.1| hypothetical protein FAEPRAM212_02688 [Faecalibacterium prausnitzii M21/2] gi|158442900|gb|EDP19905.1| hypothetical protein FAEPRAM212_02688 [Faecalibacterium prausnitzii M21/2] Length = 324 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 151/283 (53%), Gaps = 5/283 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++ S VA++G N GKS+L N VG KV+IVT K QTTR+ + G+++ Q V LDTP Sbjct: 25 DTSSVFVAVIGRPNVGKSSLTNLLVGEKVAIVTSKPQTTRTRITGVITRGPLQYVLLDTP 84 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ A + K M + + +I D+ ++ + + L + L+ E RS I ++N Sbjct: 85 GVHKAHNKLGKRMDKTASDSIADVDVSMMLFEPYGALNESEMALV-EALHRSGPAIAVIN 143 Query: 139 KIDCVKPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K D VK LE +AE+ VF ++ + +S G +++ + L P + D Sbjct: 144 KTDLVKEPADLETRKAELKALGVF-DEIYTISVRNKEGSEELFDALSRYAVEGPHYFDDD 202 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV-IYVERPSQ 255 +D+P AE+ REK L + EIP+ VV E+++E+ ++ V IY ER S Sbjct: 203 AYTDMPEKELVAEVIREKALLFMRDEIPHGIAVVVERFKERPGTDLIDIDVNIYCERESH 262 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K +++GK G +K I+ A+ + E L V+L +VKV+ DW Sbjct: 263 KGMVIGKGGAMLKKIASAARADCEEFLGCRVNLQCWVKVKSDW 305 >gi|15841876|ref|NP_336913.1| GTP-binding protein Era [Mycobacterium tuberculosis CDC1551] gi|31793541|ref|NP_856034.1| GTP-binding protein Era [Mycobacterium bovis AF2122/97] gi|57116977|ref|YP_177873.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Rv] gi|121638243|ref|YP_978467.1| GTP-binding protein Era [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662196|ref|YP_001283719.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Ra] gi|148823567|ref|YP_001288321.1| GTP-binding protein Era [Mycobacterium tuberculosis F11] gi|167968758|ref|ZP_02551035.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Ra] gi|215404290|ref|ZP_03416471.1| GTP-binding protein Era [Mycobacterium tuberculosis 02_1987] gi|215412110|ref|ZP_03420874.1| GTP-binding protein Era [Mycobacterium tuberculosis 94_M4241A] gi|215427740|ref|ZP_03425659.1| GTP-binding protein Era [Mycobacterium tuberculosis T92] gi|215431304|ref|ZP_03429223.1| GTP-binding protein Era [Mycobacterium tuberculosis EAS054] gi|215446608|ref|ZP_03433360.1| GTP-binding protein Era [Mycobacterium tuberculosis T85] gi|218754092|ref|ZP_03532888.1| GTP-binding protein Era [Mycobacterium tuberculosis GM 1503] gi|219558355|ref|ZP_03537431.1| GTP-binding protein Era [Mycobacterium tuberculosis T17] gi|224990737|ref|YP_002645424.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798558|ref|YP_003031559.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 1435] gi|254365141|ref|ZP_04981187.1| GTP-binding protein era [Mycobacterium tuberculosis str. Haarlem] gi|254551411|ref|ZP_05141858.1| GTP-binding protein Era [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187367|ref|ZP_05764841.1| GTP-binding protein Era [Mycobacterium tuberculosis CPHL_A] gi|260201488|ref|ZP_05768979.1| GTP-binding protein Era [Mycobacterium tuberculosis T46] gi|260205665|ref|ZP_05773156.1| GTP-binding protein Era [Mycobacterium tuberculosis K85] gi|289443885|ref|ZP_06433629.1| GTP-binding protein Era [Mycobacterium tuberculosis T46] gi|289448006|ref|ZP_06437750.1| GTP-binding protein Era [Mycobacterium tuberculosis CPHL_A] gi|289553846|ref|ZP_06443056.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 605] gi|289570506|ref|ZP_06450733.1| GTP-binding protein era [Mycobacterium tuberculosis T17] gi|289575058|ref|ZP_06455285.1| GTP-binding protein era [Mycobacterium tuberculosis K85] gi|289746142|ref|ZP_06505520.1| GTP-binding protein era [Mycobacterium tuberculosis 02_1987] gi|289750963|ref|ZP_06510341.1| GTP-binding protein era [Mycobacterium tuberculosis T92] gi|289754469|ref|ZP_06513847.1| GTP-binding protein Era [Mycobacterium tuberculosis EAS054] gi|289758488|ref|ZP_06517866.1| GTP-binding protein [Mycobacterium tuberculosis T85] gi|289762530|ref|ZP_06521908.1| GTP-binding protein era [Mycobacterium tuberculosis GM 1503] gi|294994532|ref|ZP_06800223.1| GTP-binding protein Era [Mycobacterium tuberculosis 210] gi|297634966|ref|ZP_06952746.1| GTP-binding protein Era [Mycobacterium tuberculosis KZN 4207] gi|297731958|ref|ZP_06961076.1| GTP-binding protein Era [Mycobacterium tuberculosis KZN R506] gi|298525846|ref|ZP_07013255.1| GTP-binding protein Era [Mycobacterium tuberculosis 94_M4241A] gi|306776629|ref|ZP_07414966.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu001] gi|306780402|ref|ZP_07418739.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu002] gi|306785152|ref|ZP_07423474.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu003] gi|306789513|ref|ZP_07427835.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu004] gi|306793838|ref|ZP_07432140.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu005] gi|306798235|ref|ZP_07436537.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu006] gi|306804111|ref|ZP_07440779.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu008] gi|306808683|ref|ZP_07445351.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu007] gi|306968512|ref|ZP_07481173.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu009] gi|306972741|ref|ZP_07485402.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu010] gi|307080446|ref|ZP_07489616.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu011] gi|307085042|ref|ZP_07494155.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu012] gi|313659292|ref|ZP_07816172.1| GTPase Era [Mycobacterium tuberculosis KZN V2475] gi|61223693|sp|P0A562|ERA_MYCTU RecName: Full=GTPase Era gi|61223694|sp|P0A563|ERA_MYCBO RecName: Full=GTPase Era gi|189037654|sp|A1KL54|ERA_MYCBP RecName: Full=GTPase Era gi|189037657|sp|A5U557|ERA_MYCTA RecName: Full=GTPase Era gi|254783661|sp|C1AQS7|ERA_MYCBT RecName: Full=GTPase Era gi|13882142|gb|AAK46727.1| GTP-binding protein, Era/ThdF family [Mycobacterium tuberculosis CDC1551] gi|31619134|emb|CAD97246.1| PROBABLE GTP-BINDING PROTEIN ERA [Mycobacterium bovis AF2122/97] gi|41353691|emb|CAE55479.1| PROBABLE GTP-BINDING PROTEIN ERA [Mycobacterium tuberculosis H37Rv] gi|121493891|emb|CAL72366.1| Probable GTP-binding protein era [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150655|gb|EBA42700.1| GTP-binding protein era [Mycobacterium tuberculosis str. Haarlem] gi|148506348|gb|ABQ74157.1| GTP-binding protein Era [Mycobacterium tuberculosis H37Ra] gi|148722094|gb|ABR06719.1| GTP-binding protein era [Mycobacterium tuberculosis F11] gi|224773850|dbj|BAH26656.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253320061|gb|ACT24664.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 1435] gi|289416804|gb|EFD14044.1| GTP-binding protein Era [Mycobacterium tuberculosis T46] gi|289420964|gb|EFD18165.1| GTP-binding protein Era [Mycobacterium tuberculosis CPHL_A] gi|289438478|gb|EFD20971.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 605] gi|289539489|gb|EFD44067.1| GTP-binding protein era [Mycobacterium tuberculosis K85] gi|289544260|gb|EFD47908.1| GTP-binding protein era [Mycobacterium tuberculosis T17] gi|289686670|gb|EFD54158.1| GTP-binding protein era [Mycobacterium tuberculosis 02_1987] gi|289691550|gb|EFD58979.1| GTP-binding protein era [Mycobacterium tuberculosis T92] gi|289695056|gb|EFD62485.1| GTP-binding protein Era [Mycobacterium tuberculosis EAS054] gi|289710036|gb|EFD74052.1| GTP-binding protein era [Mycobacterium tuberculosis GM 1503] gi|289714052|gb|EFD78064.1| GTP-binding protein [Mycobacterium tuberculosis T85] gi|298495640|gb|EFI30934.1| GTP-binding protein Era [Mycobacterium tuberculosis 94_M4241A] gi|308214948|gb|EFO74347.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu001] gi|308326724|gb|EFP15575.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu002] gi|308330137|gb|EFP18988.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu003] gi|308333998|gb|EFP22849.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu004] gi|308337779|gb|EFP26630.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu005] gi|308341460|gb|EFP30311.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu006] gi|308344946|gb|EFP33797.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu007] gi|308349257|gb|EFP38108.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu008] gi|308353877|gb|EFP42728.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu009] gi|308357822|gb|EFP46673.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu010] gi|308361768|gb|EFP50619.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu011] gi|308365390|gb|EFP54241.1| GTP-binding protein era [Mycobacterium tuberculosis SUMu012] gi|323719031|gb|EGB28179.1| GTP-binding protein era [Mycobacterium tuberculosis CDC1551A] gi|326903980|gb|EGE50913.1| GTP-binding protein era [Mycobacterium tuberculosis W-148] gi|328458326|gb|AEB03749.1| GTP-binding protein era [Mycobacterium tuberculosis KZN 4207] Length = 300 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 153/288 (53%), Gaps = 6/288 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V LVG N GKSTL N VGAKV+I + + QTTR +RGIV + QI+ +DTPG+ Sbjct: 6 SGFVCLVGRPNTGKSTLTNALVGAKVAITSTRPQTTRHAIRGIVHSDDFQIILVDTPGLH 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILN 138 + K + L T D++ L + + + I + L+ ++ L++I+ Sbjct: 66 RPRTLLGKRLNDLVRETYAAVDVIGLCIPADEAIGPGDRWIVEQLRSTGPANTTLVVIVT 125 Query: 139 KIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V E+++ Q ++LV + VSA G D +++ L + LP P Y + Sbjct: 126 KIDKVPKEKVVAQLVAVSELVTNAAEIVPVSAMTGDRVDLLIDVLAAALPAGPAYYPDGE 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPSQ 255 ++D P AE+ RE + E+P+S VV ++ E +D I + +YVER SQ Sbjct: 186 LTDEPEEVLMAELIREAALQGVRDELPHSLAVVIDEVSPREGRDDLIDVHAALYVERDSQ 245 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++GK G ++ + A+ +I +L V+L L VKV K+W DPK Sbjct: 246 KGIVIGKGGARLREVGTAARSQIENLLGTKVYLDLRVKVAKNWQRDPK 293 >gi|219684368|ref|ZP_03539312.1| GTP-binding protein Era [Borrelia garinii PBr] gi|219672357|gb|EED29410.1| GTP-binding protein Era [Borrelia garinii PBr] Length = 290 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/288 (31%), Positives = 160/288 (55%), Gaps = 3/288 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFVAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M++ S+I +++ ++D + + +L+ I + ++++NK+ Sbjct: 62 HLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVLINKV 121 Query: 141 DCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K ++ E + + K + +SA K +++ N + P Y + + Sbjct: 122 D-LKNTKIKEITQFLKEKGIEDNNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYYT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D + +EI REK +L +E+PYS V + E KK S+ IR I+V SQK I+ Sbjct: 181 DQEINFRISEIIREKAIENLKEELPYSLYVDIDTLENKKR-SLFIRANIFVANESQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GKNG+ IK+I A+K IA+I E +L L VK++K+W + K + Sbjct: 240 VGKNGKEIKSIGERARKTIAKIFETKCNLFLQVKLKKNWNKEDKLIKR 287 >gi|313681854|ref|YP_004059592.1| GTP-binding protein era [Sulfuricurvum kujiense DSM 16994] gi|313154714|gb|ADR33392.1| GTP-binding protein Era [Sulfuricurvum kujiense DSM 16994] Length = 292 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 156/288 (54%), Gaps = 10/288 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++G VALVG NAGKSTL+N +G K+++V+ K TR IV + QI+F+DTPG Sbjct: 2 NKAGFVALVGRPNAGKSTLMNWILGEKIALVSQKANATRKRSNAIVMHNDDQIIFVDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH-DLLKEIAKRSSRLILILN 138 + A+ ++ M+ + I D+V + + + IH + EI + I++L+ Sbjct: 62 LHQAEKLLNQYMLEEALKAIGDCDLVVYLAPASDK---TIHYEKFLEINADKRKHIIVLS 118 Query: 139 KIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID + LL++ N+ F+ M S K G D+L+ + L +P++Y + Sbjct: 119 KIDQISQADLLKKIGEYNRFSDHFLALIPM-SVNKNVGKKDLLDTIVKHLDESPYLYDPE 177 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQ 255 I+ + E RE +F ++ EIPY S V+ +K +E D + IR I VE+ SQ Sbjct: 178 NITTEMVRDIYKEFIREAIFDNISDEIPYESDVIIDKIDE--DAPVEHIRATIIVEKDSQ 235 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++GK G IK I A+++I + +PV+L LFV V+K W D K Sbjct: 236 KGIIIGKGGAAIKRIGQNAREKIERLASKPVYLELFVSVKKGWTTDKK 283 >gi|153953550|ref|YP_001394315.1| GTP-binding protein Era [Clostridium kluyveri DSM 555] gi|219854172|ref|YP_002471294.1| hypothetical protein CKR_0829 [Clostridium kluyveri NBRC 12016] gi|189037262|sp|A5N6N6|ERA_CLOK5 RecName: Full=GTPase Era gi|254783294|sp|B9E055|ERA_CLOK1 RecName: Full=GTPase Era gi|146346431|gb|EDK32967.1| Predicted GTP-binding protein [Clostridium kluyveri DSM 555] gi|219567896|dbj|BAH05880.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 293 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 154/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + ++G N GKSTL+N +G K+SIV+ K QTTR+ ++ I++ + Q++F+DTPGI Sbjct: 3 KSGFITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M++++ S++K D++ ++ E+ +L+++ K + + L++NKI Sbjct: 63 HKPKHKLGNYMVKVAESSVKDVDLILFLITPDVEVGKGDRYILEQLKKENIPVFLVVNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ + + +++ + +SA K +++ + +P P Y D I+D Sbjct: 123 DENPQEKVAQTLKNYSEIFDFAEIIPISALKQKNVKELVELMVKYMPEGPKYYPDDMITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 +EI REK L KE+P+ V ++ G I I E+ S K I++ Sbjct: 183 KQEKFVVSEIIREKALRLLSKEVPHGIAVDILSMKKNSKGLYNIEATILCEKESHKGIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K IS A+++I + L+ V+L ++VKV+K+W Sbjct: 243 GKKGAMLKKISTYAREDIEKFLDSKVYLEVWVKVKKEW 280 >gi|51598915|ref|YP_073103.1| GTP-binding protein Era [Borrelia garinii PBi] gi|81609837|sp|Q660L0|ERA_BORGA RecName: Full=GTPase Era gi|51573486|gb|AAU07511.1| GTP-binding protein [Borrelia garinii PBi] Length = 290 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 159/292 (54%), Gaps = 11/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M++ S+I +++ ++D + + +L+ I + +++LNK+ Sbjct: 62 HLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKILEIIKNSKIKFLVLLNKV 121 Query: 141 DCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D + + L++ EI + + +SA K +++ N + P Y Sbjct: 122 DLKNTKIKEITQFLKEKEIEDNNI-----IKISAEKKINTEELKNKIYENFSEGPLYYPQ 176 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 + +D + +EI REK +L +E+PYS V + E KK GS+ IR I+V SQ Sbjct: 177 EYYTDQEINFRISEIIREKAIENLKEELPYSLYVDIDILENKK-GSLFIRANIFVANESQ 235 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 K I++GKNG+ IK+I A+ IA+I E +L L VK++K+W + K + Sbjct: 236 KGIIVGKNGKEIKSIGERARITIAKIFETKCNLFLQVKLKKNWNKEDKLIKR 287 >gi|331004918|ref|ZP_08328332.1| GTP-binding protein Era [gamma proteobacterium IMCC1989] gi|330421268|gb|EGG95520.1| GTP-binding protein Era [gamma proteobacterium IMCC1989] Length = 299 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 91/288 (31%), Positives = 158/288 (54%), Gaps = 6/288 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N +G K+SI + K QTTR + GI + +++Q +++DTPG+ Sbjct: 7 RCGYIAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRHKLLGIKTTEDTQFIYVDTPGL 66 Query: 81 FNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 K + ++ M R + I+ D+V +++ + L + + + +A+ S +IL++NK Sbjct: 67 HQGQKKAINRYMNRAVTTAIQDVDVVLFMIEKLQWLPED-EAVAQRLAEIKSPVILVINK 125 Query: 140 IDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D + E LL + + V +++ VSA D + + LP + Y+ DQI Sbjct: 126 VDTIDDKETLLPHMQKLLEQVNVQEVIPVSALNNQNLDRLEEIIRVRLPEDDFFYAEDQI 185 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 +D AEI REK+ L E+PY V E++ + +G IL I +I VER QK+ Sbjct: 186 TDRSSRFLAAEIIREKITRQLGDELPYQMTVEIEEFTQ--EGKILHINALILVEREGQKR 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++G G +K I +A++++ + + + L +VKV+ W D + Sbjct: 244 ILIGDKGDRLKKIGQQAREDMQVLFDSKIMLKTWVKVKSGWSDDERAL 291 >gi|152995276|ref|YP_001340111.1| GTP-binding protein Era [Marinomonas sp. MWYL1] gi|150836200|gb|ABR70176.1| GTP-binding protein Era [Marinomonas sp. MWYL1] Length = 300 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 161/285 (56%), Gaps = 6/285 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N +G K+SI + K QTTR + G+ +E+ Q +++DTPG+ Sbjct: 10 GYIAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRDQILGVKTEEHVQAIYVDTPGLHL 69 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + +++M + + + +K D+V V+D+ R + + +L+++ +IL++NK+D Sbjct: 70 GETKAINRIMNKTAAAALKDVDVVLFVIDADRWTEED-ESVLQKVKHARCPVILVVNKVD 128 Query: 142 CV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 + K + L A +++++ F + +SA + + D + + S +P Y DQI+ Sbjct: 129 QLDQKEDLLPRLANLSDRMNFAQ-IVPISALRNNNLDRLERLVESYIPEGTQFYPEDQIT 187 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 + AEI REK+ L +E+PY V E++ ++ +I I +I VER QK+I+ Sbjct: 188 NRSSRFLAAEIVREKITRQLGQEVPYEVAVQIEEF-VYEESAIHISALILVERNGQKRII 246 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +G+ G IK I EA+ ++ + + V L L++K++ W D + Sbjct: 247 IGERGDKIKLIGKEARIDMENLFQHKVMLNLWIKIRSGWSDDERA 291 >gi|315453296|ref|YP_004073566.1| GTP-binding protein ERA-like protein [Helicobacter felis ATCC 49179] gi|315132348|emb|CBY82976.1| GTP-binding protein ERA homolog [Helicobacter felis ATCC 49179] Length = 297 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 157/290 (54%), Gaps = 14/290 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-----IVF 74 S++G +AL+G NAGKSTL+N V +++ +HK TR ++ IV +SQ +VF Sbjct: 2 SKAGFIALIGRPNAGKSTLLNALVNEHLALTSHKAHATRKALKAIVPYTDSQGNACQMVF 61 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DTPGI + K + M S ++ D+V + H +L+ + + L + + I Sbjct: 62 VDTPGIASPKKLLEQAMQEESMRALQDCDLVLFLASVHDDLR-DYENFLSFASTKPH--I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPW 191 L LNKID + LL A+IA + +K + SA+K D +L + LP +P+ Sbjct: 119 LALNKIDTLTHADLL--AKIAPYQAYGDKFHALVPLSASKYKNIDILLANVAELLPESPF 176 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 Y +SD M AE+ RE+LF++L +EIPY+S VV +EE D I+ I VE Sbjct: 177 YYDPQSLSDAQMREIYAEMIREQLFVYLSEEIPYASAVVLTHFEE-GDKLDRIKAQIVVE 235 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + SQKK+++GK G IK I A+ ++ + + V L L V V K+W + Sbjct: 236 KESQKKMIIGKEGNVIKKIGRAARLQMESLGGKKVFLQLEVVVCKNWSRE 285 >gi|168181631|ref|ZP_02616295.1| GTP-binding protein Era [Clostridium botulinum Bf] gi|237796398|ref|YP_002863950.1| GTP-binding protein Era [Clostridium botulinum Ba4 str. 657] gi|259645941|sp|C3L3F3|ERA_CLOB6 RecName: Full=GTPase Era gi|182675144|gb|EDT87105.1| GTP-binding protein Era [Clostridium botulinum Bf] gi|229262668|gb|ACQ53701.1| GTP-binding protein Era [Clostridium botulinum Ba4 str. 657] Length = 296 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 153/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N + K+SIV+ + QTTR+ ++ I++E Q+VF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++ + +K D+V +++ + +++++ + + L+LNKI Sbjct: 63 HKPKHKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E + ++L+ E+ +SA KG D + + +P P Y D I D Sbjct: 123 DENPQEKVAETLKTYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIID 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AEI REK L +E+P+ V + ++ + G+ I I E+ S K I++ Sbjct: 183 QNERFIVAEIVREKALRLLSEEVPHGIAVEILQMKKNEKGTYHIEGNILCEKNSHKPIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K IS A+++I L+ V++ L+VKV+++W Sbjct: 243 GKGGSKLKKISQYARQDIEAFLQSKVYIRLWVKVKEEW 280 >gi|170754569|ref|YP_001782578.1| GTP-binding protein Era [Clostridium botulinum B1 str. Okra] gi|226741200|sp|B1ILK9|ERA_CLOBK RecName: Full=GTPase Era gi|169119781|gb|ACA43617.1| GTP-binding protein Era [Clostridium botulinum B1 str. Okra] gi|322807262|emb|CBZ04836.1| GTP-binding protein Era [Clostridium botulinum H04402 065] Length = 296 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 153/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N + K+SIV+ + QTTR+ ++ I++E Q+VF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++ + +K D+V +++ + +++++ + + L+LNKI Sbjct: 63 HKPKHKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E + ++L+ E+ +SA KG D + + +P P Y D I D Sbjct: 123 DENPQEKVAETLKTYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIID 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AEI REK L +E+P+ V + ++ + G+ I I E+ S K I++ Sbjct: 183 QNERFIVAEIVREKALRLLSEEVPHGIAVEILQMKKNEKGTYHIEGNILCEKNSHKPIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K IS A+++I L+ V++ L+VKV+++W Sbjct: 243 GKGGSKLKKISQYARQDIEAFLQSKVYIRLWVKVKEEW 280 >gi|206602234|gb|EDZ38716.1| GTP-binding protein (Era) [Leptospirillum sp. Group II '5-way CG'] Length = 312 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 154/294 (52%), Gaps = 9/294 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +SRSG V+LVG N+GKSTLVN VG K++ + QTTR++++GI + QIVF DTP Sbjct: 13 HSRSGFVSLVGLPNSGKSTLVNAIVGEKIAATSPVAQTTRTLIQGIHTTTRGQIVFYDTP 72 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRL 133 G ++++LM ++ + AD+V VV ++++ LL + R L Sbjct: 73 GFHRLSHAFNQLMGTVAKEALLSADVVVWVVSLDPLPGPQDVEKMRQILLPALGGRP--L 130 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++ K+D K + ++ + K F + VS K D +N L LP V+ Sbjct: 131 VIAATKMDRAKSQGMIPRLLEIEKWGFPGEIIPVSGLKEKNLDRFVNLLFDLLPAGEPVF 190 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR--QVIYVE 251 + + + E +EK+FL L +E+P+ + V+ E++EE + + R ++VE Sbjct: 191 DREWYTSQTVRQLAREYIQEKIFLQLREEVPHQAAVLIEEFEEPQSPGEITRITGTVFVE 250 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R SQK I++G+ G+ I+ IS A+ +I ++ V L L V+V + W +P Sbjct: 251 RLSQKGILIGQKGERIREISQAARMDIERLVGGKVFLRLDVRVSEGWRENPGML 304 >gi|148380897|ref|YP_001255438.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 3502] gi|153932263|ref|YP_001385205.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 19397] gi|153936986|ref|YP_001388674.1| GTP-binding protein Era [Clostridium botulinum A str. Hall] gi|226741172|sp|A7FXK1|ERA_CLOB1 RecName: Full=GTPase Era gi|226741199|sp|A5I626|ERA_CLOBH RecName: Full=GTPase Era gi|148290381|emb|CAL84508.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928307|gb|ABS33807.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 19397] gi|152932900|gb|ABS38399.1| GTP-binding protein Era [Clostridium botulinum A str. Hall] Length = 296 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 153/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N + K+SIV+ + QTTR+ ++ I++E Q+VF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++ + +K D+V +++ + +++++ + + L+LNKI Sbjct: 63 HKPKHKLGEYMVKSASEAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E + ++L+ E+ +SA KG D + + +P P Y D I D Sbjct: 123 DENPQEKVAETLKTYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIID 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AEI REK L +E+P+ V + ++ + G+ I I E+ S K I++ Sbjct: 183 QNERFIVAEIVREKALRLLSEEVPHGIAVEILQMKKNEKGTYHIEGNILCEKNSHKPIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K IS A+++I L+ V++ L+VKV+++W Sbjct: 243 GKGGSKLKKISQYARQDIEAFLQSKVYIRLWVKVKEEW 280 >gi|21220998|ref|NP_626777.1| GTP-binding protein Era [Streptomyces coelicolor A3(2)] gi|256787839|ref|ZP_05526270.1| GTP-binding protein Era [Streptomyces lividans TK24] gi|289771724|ref|ZP_06531102.1| GTP-binding protein Era [Streptomyces lividans TK24] gi|6714753|emb|CAB66217.1| Era-like GTP-binding protein [Streptomyces coelicolor A3(2)] gi|289701923|gb|EFD69352.1| GTP-binding protein Era [Streptomyces lividans TK24] Length = 320 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 158/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV +++Q++ +DTPG+ Sbjct: 20 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHREDAQLILVDTPGL 79 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + ++ +L + KE+A R + + I Sbjct: 80 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELAGIRKTPKVAI 136 Query: 137 LNKIDCVKPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V + L EQ ++L + + VSAT D + + L LP P Sbjct: 137 VTKTDLVDSKTLAEQLIAIDQLGKELGIAWAEIVPVSATANQQVDLLADLLTPLLPEGPA 196 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 197 LYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIHA 256 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + ++++ +I +L PV L L VKV KDW DPK Sbjct: 257 NVYIERPSQKGIIIGPKGKRLKDVGIKSRTQIEALLGTPVFLDLHVKVAKDWQRDPK 313 >gi|170761539|ref|YP_001788258.1| GTP-binding protein Era [Clostridium botulinum A3 str. Loch Maree] gi|226741201|sp|B1KZM3|ERA_CLOBM RecName: Full=GTPase Era gi|169408528|gb|ACA56939.1| GTP-binding protein Era [Clostridium botulinum A3 str. Loch Maree] Length = 296 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 152/278 (54%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N + K+SIV+ + QTTR+ ++ I++E Q+VF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++ + +K D+V +++ + +++++ + + L+LNKI Sbjct: 63 HKPKHKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E + ++L+ E+ +SA KG D + + +P P Y D I D Sbjct: 123 DENPQEKVAETLKTYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIID 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AEI REK L +E+P+ V + + + G+ I I E+ S K I++ Sbjct: 183 QNERFIVAEIVREKALRLLSEEVPHGIAVEILQMKRNEKGTYHIEGNILCEKNSHKPIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K IS A+++I L+ V++ L+VKV+++W Sbjct: 243 GKGGSKLKKISQYARQDIEAFLQSKVYIRLWVKVKEEW 280 >gi|13959364|sp|Q9RDF2|ERA_STRCO RecName: Full=GTPase Era Length = 317 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 158/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV +++Q++ +DTPG+ Sbjct: 17 RAGFACFVGRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHREDAQLILVDTPGL 76 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + ++ +L + KE+A R + + I Sbjct: 77 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELAGIRKTPKVAI 133 Query: 137 LNKIDCVKPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V + L EQ ++L + + VSAT D + + L LP P Sbjct: 134 VTKTDLVDSKTLAEQLIAIDQLGKELGIAWAEIVPVSATANQQVDLLADLLTPLLPEGPA 193 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 194 LYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIHA 253 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + ++++ +I +L PV L L VKV KDW DPK Sbjct: 254 NVYIERPSQKGIIIGPKGKRLKDVGIKSRTQIEALLGTPVFLDLHVKVAKDWQRDPK 310 >gi|113476532|ref|YP_722593.1| GTP-binding protein Era [Trichodesmium erythraeum IMS101] gi|110167580|gb|ABG52120.1| GTP-binding protein Era [Trichodesmium erythraeum IMS101] Length = 310 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 155/280 (55%), Gaps = 4/280 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N+ VG KV+I + QTTR+ +RGI++ + +QI+F+DTPGI Sbjct: 17 KSGFVGIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLRGILTTQAAQIIFVDTPGI 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K++++ + I+ D+V L+VD ++ + K + +IL +NK+ Sbjct: 77 HKPQHQLGKVLVQNAKVAIQSVDLVLLIVDGSVIAGGGDRYIINLLDKIQTPVILGMNKL 136 Query: 141 DCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D ++P+ + +L+ + SA G G + + + L + P+ Y D + Sbjct: 137 D-LQPQDAWKIEASYYQLIHPHPWQIIKFSAVTGEGVEILQDLLIEQMETGPYYYPPDLV 195 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D E+ RE++ L +E+P+S + ++ +E+ + I I VER SQK I Sbjct: 196 TDQAERFIMGELIREQILLLTREEVPHSVAIAIDRVDEEPTIT-RILATINVERSSQKGI 254 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I A+++I +++ V+L LFV+VQ W Sbjct: 255 LIGKGGNMLKAIGSAARQQIQKLIAGKVYLELFVRVQSKW 294 >gi|168179376|ref|ZP_02614040.1| GTP-binding protein Era [Clostridium botulinum NCTC 2916] gi|182669495|gb|EDT81471.1| GTP-binding protein Era [Clostridium botulinum NCTC 2916] Length = 296 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 153/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N + K+SIV+ + QTTR+ ++ I++E Q+VF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++ + +K D+V +++ + +++++ + + L+LNKI Sbjct: 63 HKPKHKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E + ++L+ E+ +SA KG D + + +P P Y D I D Sbjct: 123 DENPQEKVAETLKAYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIID 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AEI REK L +E+P+ V + ++ + G+ I I E+ S K I++ Sbjct: 183 QNERFIVAEIVREKALRLLSEEVPHGIAVEILQMKKNEKGTYHIEGNILCEKNSHKPIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K IS A+++I L+ V++ L+VKV+++W Sbjct: 243 GKGGSKLKKISQYARQDIEAFLQSKVYIRLWVKVKEEW 280 >gi|71064910|ref|YP_263637.1| GTP-binding protein Era [Psychrobacter arcticus 273-4] gi|71037895|gb|AAZ18203.1| probable GTP-binding protein Era [Psychrobacter arcticus 273-4] Length = 330 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 159/312 (50%), Gaps = 23/312 (7%) Query: 15 FVQDNSR-------SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F DNS+ +G VA+VG N GKSTL+N +G K+SI + K QTTR + GI+S Sbjct: 16 FSPDNSKLAVEGFKTGYVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHRIHGILSN 75 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKE 125 E Q VF+DTPGI ++ + R++ + + V LV+ + DL L++ Sbjct: 76 DEMQAVFVDTPGIH--RNEVRAINERMNKAAVSALVDVDLVLFVVDSDQWRDDDLLVLQK 133 Query: 126 IAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + + ++L++NK D +K + +L E N VSA K D + + S Sbjct: 134 LGDTNLNVVLVINKADTLKDKGSVLPLMETFNDSFDFADIVPVSALKNQNLDRLQEVIAS 193 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK------- 237 LP+A +Y +QI+D +EI REK+ E+PY V + ++++ Sbjct: 194 HLPVAAPIYDTEQITDRSERFLASEIIREKIMRSAGDEVPYDLTVQIDGFKDEAAHTDPK 253 Query: 238 ----KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 + I IYVER QK I++G GQ IK + ++A+K++ ++ ++ + L L+VK Sbjct: 254 TGRPRKACTFIDATIYVERSGQKAIVIGDKGQRIKQVGMDARKDMEQLFDKKIMLTLWVK 313 Query: 294 VQKDWGHDPKCC 305 V++ W D + Sbjct: 314 VKRGWSDDERAL 325 >gi|78065719|ref|YP_368488.1| GTP-binding protein Era [Burkholderia sp. 383] gi|77966464|gb|ABB07844.1| GTP-binding protein Era [Burkholderia sp. 383] Length = 299 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 155/285 (54%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D++ V+++ R + +L I L LI N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDVILFVIEAGR-FGPDDQKVLDLIPPGMPTL-LIAN 126 Query: 139 KIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V + L + + L + +SA + +L+ + LP +Y D+ Sbjct: 127 KIDRVNDKASLFPFMQQMSTLREFTELVPLSAQRPEDIKRLLDTIKPYLPEGEPIYGEDE 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+EE +G + I I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVLIDKFEE--EGRLKRIFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G+ +K IS EA+ ++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGEKLKQISTEARMDMEKLFDGPVYLETFVKVKSGWADN 289 >gi|88703550|ref|ZP_01101266.1| GTP-binding protein era [Congregibacter litoralis KT71] gi|88702264|gb|EAQ99367.1| GTP-binding protein era [Congregibacter litoralis KT71] Length = 299 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 158/287 (55%), Gaps = 4/287 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K+SI + K QTTR V GI + +Q++F+DTPG Sbjct: 5 TRCGYVAIVGRPNVGKSTLLNHLLGQKLSITSRKPQTTRHQVLGIKTTDTAQMLFVDTPG 64 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 I +D + ++ M R + + + DIV +VVD E + + +L+ + L+L++N Sbjct: 65 IHGGEDRALNRFMNRTAGAAVAAVDIVVMVVDRG-EWRDDDERVLRSCLASDAPLLLVVN 123 Query: 139 KIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D P +L E + +SA + + + + LP P+++ D+ Sbjct: 124 KVDLEDNPNAILPSLESLAQRADFAALIPLSALRARNLEVLETEIVQRLPEGPFLFEEDE 183 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+D AEI REK+ L E+PYS+ V E++ ++G + I VI VER QK Sbjct: 184 ITDRSTRFLVAEIVREKITRQLGDELPYSTTVEIEEYGH-ENGIVHISAVILVERKGQKA 242 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I++G+ G ++ I +A+++I +++ V L L+VKV+ W D + Sbjct: 243 ILIGQKGSRLRQIGTDARQDIERLIDSKVMLNLWVKVRSGWADDERA 289 >gi|254779461|ref|YP_003057566.1| GTP-binding protein Era [Helicobacter pylori B38] gi|254001372|emb|CAX29357.1| GTP-binding protein era homolog [Helicobacter pylori B38] Length = 301 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 161/294 (54%), Gaps = 19/294 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + I A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAIGDAELRVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L++ + + + F+ +SA K + +L + L + Sbjct: 119 LALSKIDTATHKQVLQKLQEYQQY---DSQFLALVPLSAKKSQNLNALLECISKHLNPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIY 249 W++ D +SD M EI RE LF L EIPY S V+ +K+ EE++ + R I Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAR--II 233 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 234 VEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|308233978|ref|ZP_07664715.1| GTP-binding protein Era [Atopobium vaginae DSM 15829] Length = 297 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 149/284 (52%), Gaps = 7/284 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V+LVG + GKSTL+N G K++I + QTTR +R ++++ SQIV +DTPG+ Sbjct: 4 SGFVSLVGRPSVGKSTLLNACYGGKIAITSRVAQTTRRRMRAVLTDDSSQIVIVDTPGLH 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILIL 137 KD+ K + + + + +K D+V ++D+ +E+ H + + +A +L++ Sbjct: 64 KPKDALGKELNQTALAELKDVDVVAHLIDASQEVGRGDAWVAHHIQQSLAPFK---LLVI 120 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V + +Q E A+KL ++ +VSA K D L + LP P+ + +D Sbjct: 121 TKADKVDAATVTKQLEAASKLANYDQKLVVSARKNFNVDTFLQIVRKHLPAGPYWFPSDM 180 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 D+ AE REK+ EIP+S V ++E IR I VER QK Sbjct: 181 DVDMSDKDLIAEFIREKVLNLTRDEIPHSVAVDVSEFEWHHHDVCAIRAQIIVEREGQKA 240 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK G IK I +EA+K+I ++L V L L V V W D Sbjct: 241 IIIGKRGALIKKIGVEARKDIEKLLGARVFLDLVVCVVPLWRKD 284 >gi|187918516|ref|YP_001884079.1| GTP-binding protein Era [Borrelia hermsii DAH] gi|226741169|sp|B2S103|ERA_BORHD RecName: Full=GTPase Era gi|119861364|gb|AAX17159.1| hypothetical protein BH0660 [Borrelia hermsii DAH] Length = 290 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 92/291 (31%), Positives = 161/291 (55%), Gaps = 15/291 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G + GKSTL+N G ++SI++ QTTR+ ++GI ++K QI+F+DTPG Sbjct: 2 KSGFVSIIGRPSTGKSTLLNSICGHQISIISSTPQTTRNKIKGIFTDKRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ ++ S I +++ V+D E + +++L I+K ++++NKI Sbjct: 62 HLSKKKFNIALMNNVHSAITETELILYVIDIQDEPGIEENEILTIISKSKINFLVVINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFM-------VSATKGHGCDDVLNYLCSTLPLAPWVY 193 D K ++ EI ++F+EK + +SA + +++ + + + L P Y Sbjct: 122 DIQKT----KEREI---MIFLEKKGIKKDNIIKISAEQKINIEEIKDKIYANLQEGPLYY 174 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + +D M T+EI R L +E+PYS E E++K+ + I+ I V Sbjct: 175 PEEYYTDQEMNLRTSEIIRGVTIKKLKEELPYSLYTQIEILEDRKN-KLFIKANIIVAGE 233 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 SQK I++GK GQ IK I EA+K I++I E+ L L VK++K+W + K Sbjct: 234 SQKGIIVGKGGQGIKAIGEEARKIISKIFEKKCDLFLQVKLRKNWNKNSKL 284 >gi|111115493|ref|YP_710111.1| GTP-binding protein Era [Borrelia afzelii PKo] gi|216263477|ref|ZP_03435472.1| GTP-binding protein Era [Borrelia afzelii ACA-1] gi|122956333|sp|Q0SMJ3|ERA_BORAP RecName: Full=GTPase Era gi|110890767|gb|ABH01935.1| GTP-binding protein [Borrelia afzelii PKo] gi|215980321|gb|EEC21142.1| GTP-binding protein Era [Borrelia afzelii ACA-1] Length = 290 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 91/288 (31%), Positives = 157/288 (54%), Gaps = 3/288 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M+ S+I +++ ++D + +L+ I + +++LNK+ Sbjct: 62 HLSKKKFNIAMMNNIHSSIGEVELILYIIDIQDTPGEEENKMLEIIKNSKIKFLVLLNKV 121 Query: 141 DCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K ++ E + + K + +SA K +++ N + P Y + + Sbjct: 122 D-LKNTKIKEITQFLKEKGIEDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYYT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D + +EI REK +L +E+PYS V + E KK G + IR I+V SQK I+ Sbjct: 181 DQKINFRISEIIREKAIENLKEELPYSLYVDIDTLENKKRG-LFIRANIFVANESQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GKNG+ IK+I A+K IA+I E +L L VK++K+W + K + Sbjct: 240 VGKNGKEIKSIGERARKTIAKIFETKCNLFLQVKLKKNWNKEDKLIKR 287 >gi|163802959|ref|ZP_02196846.1| GTP-binding protein Era [Vibrio sp. AND4] gi|159173249|gb|EDP58077.1| GTP-binding protein Era [Vibrio sp. AND4] Length = 320 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 162/291 (55%), Gaps = 6/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G +A+VG N GKSTL+N+ +G K+SI + K QTTR + G+ ++ + Q +++DT Sbjct: 22 ENQHCGFIAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDT 81 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V +VD + +L ++ K + ++L Sbjct: 82 PGLHIEEKRAINRLMNRAANSSLSDVNLVFFLVDG-THWTNDDEMVLTKLQKSNFPVVLC 140 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D V + E + E++ ++ F++ +SA G + + ++ LP A + Sbjct: 141 VNKVDNVQDRNEVMQHMMEMSKRMDFVD-VVPISAKHGKNIEVLRKHVRDHLPEATHHFP 199 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ D I +I VER Sbjct: 200 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERH 259 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 260 GQKKMVIGKGGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 310 >gi|15611533|ref|NP_223184.1| GTP-binding protein Era [Helicobacter pylori J99] gi|10719990|sp|Q9ZLW0|ERA_HELPJ RecName: Full=GTPase Era gi|4154994|gb|AAD06035.1| GTP-binding protein [Helicobacter pylori J99] Length = 301 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 160/294 (54%), Gaps = 19/294 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L++ + K F+ +SA K + +L + L + Sbjct: 119 LALSKIDTATHKQVLQKLQEYQK---YSSQFLALVPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIY 249 W++ D +SD M EI RE LF L EIPY S V+ +K+ EE++ + R I Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAR--II 233 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 234 VEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|304388060|ref|ZP_07370189.1| GTP-binding protein Era [Neisseria meningitidis ATCC 13091] gi|304337917|gb|EFM04057.1| GTP-binding protein Era [Neisseria meningitidis ATCC 13091] gi|319410060|emb|CBY90394.1| putative Era-like GTP-binding protein [Neisseria meningitidis WUE 2594] Length = 313 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 102/289 (35%), Positives = 159/289 (55%), Gaps = 9/289 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 20 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDT 79 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLIL 135 PG D + L RL+ + + V +VV ++ D +LK++ K + +IL Sbjct: 80 PGF--QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTP-VIL 136 Query: 136 ILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ++NKID K +R +A +A VSA G ++L + LP + + Sbjct: 137 VVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPM 196 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V++ Sbjct: 197 YPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVDK 255 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 256 ESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 304 >gi|302340172|ref|YP_003805378.1| GTP-binding protein Era [Spirochaeta smaragdinae DSM 11293] gi|301637357|gb|ADK82784.1| GTP-binding protein Era [Spirochaeta smaragdinae DSM 11293] Length = 294 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 6/281 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +S + L+G + GKSTLVN G K+SIV QTTRS VRGI++E+ Q+VF DTPG Sbjct: 4 KSAWITLIGRPSVGKSTLVNCLCGRKISIVAPSPQTTRSTVRGILTEERGQLVFADTPGY 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + ++ + + + ++ ++V ++D+ R ++ +A + +L++ +NK Sbjct: 64 HISDKKLNRYLKTATEAALEECELVLYIIDATRSAGQEEREIAGLLAPLAEKLVVAINKN 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKT-FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D PE + AE A F + F +SA G G + +LN L P +Y + + Sbjct: 124 DL--PEASVPAAETAAAEAFPGRPIFTISAETGEGTEALLNTLFELSPEGELLYPEEFYT 181 Query: 200 DL-PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKK 257 D P F T EI RE++ L +E+P++ V E E G L IR VIYVER SQK Sbjct: 182 DQDPEFRVT-EIIREQVIGRLRQELPHAVYVAVEDMESDGKGEKLWIRAVIYVERESQKG 240 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G I I ++ EIA + ++L L VK W Sbjct: 241 IVVGKGGSGIAAIRKASQAEIARLFPYRIYLDLRVKSDPKW 281 >gi|15645144|ref|NP_207314.1| GTP-binding protein Era [Helicobacter pylori 26695] gi|2313632|gb|AAD07585.1| GTP-binding protein (era) [Helicobacter pylori 26695] Length = 302 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 161/294 (54%), Gaps = 19/294 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 4 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEWYESQIIF 63 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 64 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 119 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L++ + + + F+ +SA K + +L + L + Sbjct: 120 LALSKIDTATHKQVLQKLQEYQQY---DSQFLALVPLSAKKSQNLNALLECISQHLSPSA 176 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIY 249 W++ D +SD M EI RE LF L EIPY S V+ +K+ EE++ + R I Sbjct: 177 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAR--II 234 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 VEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 288 >gi|12643474|sp|P56059|ERA_HELPY RecName: Full=GTPase Era Length = 301 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 161/294 (54%), Gaps = 19/294 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEWYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L++ + + + F+ +SA K + +L + L + Sbjct: 119 LALSKIDTATHKQVLQKLQEYQQ---YDSQFLALVPLSAKKSQNLNALLECISQHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIY 249 W++ D +SD M EI RE LF L EIPY S V+ +K+ EE++ + R I Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAR--II 233 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 234 VEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|328944013|ref|ZP_08241478.1| GTP-binding protein Era [Atopobium vaginae DSM 15829] gi|327491982|gb|EGF23756.1| GTP-binding protein Era [Atopobium vaginae DSM 15829] Length = 332 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 149/284 (52%), Gaps = 7/284 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V+LVG + GKSTL+N G K++I + QTTR +R ++++ SQIV +DTPG+ Sbjct: 39 SGFVSLVGRPSVGKSTLLNACYGGKIAITSRVAQTTRRRMRAVLTDDSSQIVIVDTPGLH 98 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILIL 137 KD+ K + + + + +K D+V ++D+ +E+ H + + +A +L++ Sbjct: 99 KPKDALGKELNQTALAELKDVDVVAHLIDASQEVGRGDAWVAHHIQQSLAPFK---LLVI 155 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D V + +Q E A+KL ++ +VSA K D L + LP P+ + +D Sbjct: 156 TKADKVDAATVTKQLEAASKLANYDQKLVVSARKNFNVDTFLQIVRKHLPAGPYWFPSDM 215 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 D+ AE REK+ EIP+S V ++E IR I VER QK Sbjct: 216 DVDMSDKDLIAEFIREKVLNLTRDEIPHSVAVDVSEFEWHHHDVCAIRAQIIVEREGQKA 275 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I++GK G IK I +EA+K+I ++L V L L V V W D Sbjct: 276 IIIGKRGALIKKIGVEARKDIEKLLGARVFLDLVVCVVPLWRKD 319 >gi|186681007|ref|YP_001864203.1| GTP-binding protein Era [Nostoc punctiforme PCC 73102] gi|186463459|gb|ACC79260.1| GTP-binding protein Era [Nostoc punctiforme PCC 73102] Length = 318 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 152/296 (51%), Gaps = 7/296 (2%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 GE+T DF +SG + +VG N GKSTL+N+ VG K++I + QTTR+ +RG Sbjct: 13 GEVTIPQAPPDF-----KSGFIGIVGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRG 67 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 I++ E+Q++F+DTPGI +++++ + I+ D+V VVD + Sbjct: 68 ILTTPEAQLIFVDTPGIHKPHHQLGEVLVQNAKIAIESVDVVLFVVDGAVACGSGDRYIA 127 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIE-KTFMVSATKGHGCDDVLNYL 182 + +++ + +IL +NK D + A E + SA G + L Sbjct: 128 ELLSRSKTPVILGVNKTDQQPSDSQFLDDSYAQMAQSHEWEIVKFSAKTSAGLPQLQELL 187 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI 242 L + P Y D I+D P E+ RE++ L +E+P+S + + EE + Sbjct: 188 IEHLEIGPLYYPPDLITDQPERFIMGELIREQILLLTREEVPHSVAIAIDLVEETPSITR 247 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++ I VER SQK I++GK G +K I EA+++I +++ V+L LFVKVQ W Sbjct: 248 VL-ATINVERDSQKGILIGKGGAMLKAIGSEAREQIQKLIAGKVYLELFVKVQPKW 302 >gi|302545484|ref|ZP_07297826.1| GTP-binding protein Era [Streptomyces hygroscopicus ATCC 53653] gi|302463102|gb|EFL26195.1| GTP-binding protein Era [Streptomyces himastatinicus ATCC 53653] Length = 343 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 157/297 (52%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q+V +DTPG+ Sbjct: 43 RSGFACFVGRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPGL 102 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L + E+A + + + I Sbjct: 103 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDRFIAAELAGIKKTPKVAI 159 Query: 137 LNKIDCVKPERLLEQAEIANKL---VFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V+ E+L +Q ++L + IE + VSA + + L LP P Sbjct: 160 VTKTDLVESEQLAQQLLAIDRLGKDLGIEWAEIVPVSAVGDQQVGLLADLLVPLLPEGPT 219 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 220 LYPEGDLTDEPEQVMVAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADKPLLDIHA 279 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++ERPSQK I++G G+ +K + +++K I +L PV L L VKV KDW DPK Sbjct: 280 NLFIERPSQKGIIIGPKGRRLKDVGSKSRKHIEALLGTPVFLDLHVKVAKDWQRDPK 336 >gi|238021058|ref|ZP_04601484.1| hypothetical protein GCWU000324_00955 [Kingella oralis ATCC 51147] gi|237868038|gb|EEP69044.1| hypothetical protein GCWU000324_00955 [Kingella oralis ATCC 51147] Length = 308 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 164/290 (56%), Gaps = 17/290 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 18 RCGFIAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 77 Query: 81 FNAKDSYHK--LMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 +YH+ L RL+ + + D++ VV++ R + +LK++ K + ++L Sbjct: 78 ----QTYHRNALNDRLNLNVTEAVSGVDVIVFVVEALRFSDAD-RIVLKQLPKNTP-VML 131 Query: 136 ILNKID--CVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ++NKID K L+ AE+ + F +VSA G ++L L S LP + Sbjct: 132 VVNKIDKNKAKDAATLDAFIAEVMQEFDFAGYE-VVSAKHGLRIANLLAKLKSYLPESVP 190 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y D I+D AEI REKLF +L +E+PY+ V EK+ + +G I + V+ Sbjct: 191 MYPEDMITDKSSRFLAAEIVREKLFRYLGEELPYAMNVEVEKF-DAGEGIYHIYVAVLVD 249 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + +QK I++GK G+ +K IS EA+ ++ ++ + + L ++VKV+ W D Sbjct: 250 KENQKPIVIGKGGEKLKKISTEARLDMEKLFDCKIFLKVWVKVKSGWADD 299 >gi|257453601|ref|ZP_05618891.1| GTP-binding protein Era [Enhydrobacter aerosaccus SK60] gi|257449059|gb|EEV24012.1| GTP-binding protein Era [Enhydrobacter aerosaccus SK60] Length = 349 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 160/298 (53%), Gaps = 14/298 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL+N +G K+SI + K QTTR + GI++ ++ Q +F+DTPGI Sbjct: 48 RTGYVAIVGRPNVGKSTLMNHVLGQKLSITSRKPQTTRHRIMGILTNEQLQAIFVDTPGI 107 Query: 81 FNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + + ++ M + + + D V V+DS + ++ + + ++ +I ++NK Sbjct: 108 HSREVRAINERMNKAATLALADVDAVLFVIDSLKWVE-DDELVFAKVQNLGVPVIAVINK 166 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D +K E +L + + VSA + H D+++ + LP+A +Y A+Q+ Sbjct: 167 SDTIKDEAQLFALLQKLHDTQVFSDIVPVSALRAHNLDELVRVIGKHLPIAAPIYDAEQV 226 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-----------KDGSILIRQV 247 +D +EI REK+ EIPY V + ++++ + I Sbjct: 227 TDRSERFLASEIIREKVMRASGDEIPYDLTVQIDTFKDEPAHQDPKTGKWRKAVTFIDAT 286 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I+VER QK I++G G+ IK I +EA++++ ++ ++ V L L+VKV+K W D + Sbjct: 287 IFVERQGQKVIVIGDKGEKIKQIGIEARQDMEKMFDKKVMLTLWVKVKKGWSDDERAL 344 >gi|93005198|ref|YP_579635.1| GTP-binding protein Era [Psychrobacter cryohalolentis K5] gi|92392876|gb|ABE74151.1| GTP-binding protein Era [Psychrobacter cryohalolentis K5] Length = 338 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 155/299 (51%), Gaps = 16/299 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G VA+VG N GKSTL+N +G K+SI + K QTTR + GI+S E Q VF+DTPGI Sbjct: 37 KTGYVAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHRIHGILSNDEMQAVFVDTPGI 96 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 ++ + R++ + + V LV+ + DL L+++ + ++L++N Sbjct: 97 H--RNEVRAINERMNKAAVSALVDVDLVLFVVDSDQWRDDDLLVLQKLGDTNLNVVLVIN 154 Query: 139 KIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D +K + +L E N VSA K D + + S LP+A +Y +Q Sbjct: 155 KADTLKDKGSVLPLMETFNDSFDFADIVPVSALKNQNLDRLQEVIASHLPVAAPIYDTEQ 214 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-----------KDGSILIRQ 246 I+D +EI REK+ E+PY V + ++++ + I Sbjct: 215 ITDRSERFLASEIIREKIMRSAGDEVPYDLTVQIDGFKDEAAHTDPKTGRPRKACTFIDA 274 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IYVER QK I++G GQ IK + ++A+K++ ++ ++ + L L+VKV++ W D + Sbjct: 275 TIYVERSGQKAIVIGDKGQRIKQVGMDARKDMEQLFDKKIMLTLWVKVKRGWSDDERAL 333 >gi|187778474|ref|ZP_02994947.1| hypothetical protein CLOSPO_02068 [Clostridium sporogenes ATCC 15579] gi|226950371|ref|YP_002805462.1| GTP-binding protein Era [Clostridium botulinum A2 str. Kyoto] gi|254783292|sp|C1FVS6|ERA_CLOBJ RecName: Full=GTPase Era gi|187772099|gb|EDU35901.1| hypothetical protein CLOSPO_02068 [Clostridium sporogenes ATCC 15579] gi|226842790|gb|ACO85456.1| GTP-binding protein Era [Clostridium botulinum A2 str. Kyoto] Length = 296 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 153/278 (55%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V +VG N GKSTL+N + K+SIV+ + QTTR+ ++ I++E Q+VF+DTPGI Sbjct: 3 KSGFVTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M++ + +K D+V +++ + +++++ + + L+LNKI Sbjct: 63 HKPKHKLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E++ E + ++L+ ++ +SA KG D + + +P P Y D I D Sbjct: 123 DENPQEKVAETLKTYSELMEFQEIIPISALKGKNVDLLKELMFKYIPEGPQYYPEDMIID 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 AEI REK L +E+P+ V + ++ + G+ I I E+ S K I++ Sbjct: 183 QNERFIVAEIVREKALRLLSEEVPHGIAVEILQMKKNEKGTYHIEGNILCEKNSHKPIII 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 GK G +K IS A+++I L+ V++ L+VKV+++W Sbjct: 243 GKGGSKLKKISQYARQDIEAFLQSKVYIRLWVKVKEEW 280 >gi|218767810|ref|YP_002342322.1| GTP-binding protein Era [Neisseria meningitidis Z2491] gi|13959356|sp|Q9JVD2|ERA_NEIMA RecName: Full=GTPase Era gi|121051818|emb|CAM08124.1| putative GTPase [Neisseria meningitidis Z2491] Length = 307 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 102/289 (35%), Positives = 159/289 (55%), Gaps = 9/289 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DT Sbjct: 14 DGYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDT 73 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLIL 135 PG D + L RL+ + + V +VV ++ D +LK++ K + +IL Sbjct: 74 PGF--QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTP-VIL 130 Query: 136 ILNKIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ++NKID K +R +A +A VSA G ++L + LP + + Sbjct: 131 VVNKIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPM 190 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V++ Sbjct: 191 YPEDMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVDK 249 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 250 ESQKAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 298 >gi|67906566|gb|AAY82672.1| predicted GTP-binding protein Era [uncultured bacterium MedeBAC49C08] Length = 300 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 159/291 (54%), Gaps = 5/291 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S+ G +++VG TN GKSTL+N+ + K++I + K QTTR+ + G + ++ Q +FLDTPG Sbjct: 2 SKFGFISIVGKTNVGKSTLLNKILERKLAITSRKPQTTRNRILGAWNHEDMQAIFLDTPG 61 Query: 80 IFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + K + +K M +++ +K+ D++ +VD R + ++K++ +IL++N Sbjct: 62 VHTGHKKALNKYMNQVAMHALKNVDLILFIVDRDRWGEEE-ERIIKQLNGSKIPVILVIN 120 Query: 139 KIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKG-HGCDDVLNYLCSTLPLAPWVYSAD 196 KID +K E LL E N E+ +SA K + ++ + + LP Y D Sbjct: 121 KIDRIKNKEDLLPTIEKLNAKFDFEEIIPISALKNINAPKELYEVINNYLPHGQPHYEED 180 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++DL F +EI REK L E+PYS ++ + +E K + I IYV+ S K Sbjct: 181 FVTDLSKEFFISEIIREKAINRLGDELPYSISIIIDALKEDKK-LLSISATIYVDSKSHK 239 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 I+LGK G +K+I A+KEI ++ V L L+VKV+K W D Q Sbjct: 240 PILLGKKGDMMKSIGTAARKEIQFEYDKKVFLELWVKVKKKWTDDVNWISQ 290 >gi|210134718|ref|YP_002301157.1| GTP-binding protein Era [Helicobacter pylori P12] gi|226741217|sp|B6JL99|ERA_HELP2 RecName: Full=GTPase Era gi|210132686|gb|ACJ07677.1| GTP-binding protein Era-like protein [Helicobacter pylori P12] Length = 301 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 161/294 (54%), Gaps = 19/294 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L++ + + + F+ +SA K + +L + L + Sbjct: 119 LALSKIDTATHKQVLQKLQEYQQ---YDSQFLALVPLSAKKSQNLNALLECISKHLNPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIY 249 W++ D +SD M EI RE LF L EIPY S V+ +K+ EE++ + R I Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAR--II 233 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 234 VEKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|115351065|ref|YP_772904.1| GTP-binding protein Era [Burkholderia ambifaria AMMD] gi|115281053|gb|ABI86570.1| GTP-binding protein Era [Burkholderia ambifaria AMMD] Length = 299 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D++ V+++ R + +L I L LI N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDVILFVIEAGR-FGPDDQKVLDLIPPGMPTL-LIAN 126 Query: 139 KIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V + L + + L + +SA + +L+ + LP +Y D+ Sbjct: 127 KIDRVTDKATLFPFMQQMSGLREFTELVPLSAQRPEDIKRLLDTIKPYLPEGEPIYGEDE 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+EE +G + I I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVLIDKFEE--EGRLKRIFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G+ +K IS EA+ ++ + + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGEKLKQISTEARMDMERLFDGPVYLETFVKVKSGWADN 289 >gi|254524023|ref|ZP_05136078.1| GTP-binding protein Era [Stenotrophomonas sp. SKA14] gi|219721614|gb|EED40139.1| GTP-binding protein Era [Stenotrophomonas sp. SKA14] Length = 287 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 92/288 (31%), Positives = 158/288 (54%), Gaps = 22/288 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ Sbjct: 1 MAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHKVQ 60 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRSSRLILILN 138 K + +++M R + +++ D LV+++ R L N+ + ++L++N Sbjct: 61 KRAMNRVMNRAARGSLEGVDAGLLVIEAGRWDEEDSLAFNV------LRDAGIPVVLVVN 114 Query: 139 KIDCVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 KID +K + L+Q + +SA K +G + ++ + LP AP ++ Sbjct: 115 KIDRLKEKGALLPFLQQVTEGRDFAAVHP---ISAQKRNGLEALVRDVLKLLPEAPPMFG 171 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 D+I+D E+ RE+L L +E+PY++ V E++ E DG++L I VI+VER Sbjct: 172 EDEITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFTE--DGNLLRIGAVIWVERE 229 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G +K I +++ ++ + V L +V+V++ W D Sbjct: 230 GQKAIVIGKGGARLKEIGAKSRLQMERLFGAKVFLETWVRVREGWSDD 277 >gi|317010763|gb|ADU84510.1| GTP-binding protein Era [Helicobacter pylori SouthAfrica7] Length = 301 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 160/292 (54%), Gaps = 15/292 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L L+KID +++L++ + + F+ +SA K + +L + L + W+ Sbjct: 119 LALSKIDTATHKQVLQKLQEYQQYAPQFLS-LVPLSAKKSQNLNALLECISEHLSPSAWL 177 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVE 251 + D +SD M EI RE LF L EIPY S V+ +++ EE++ + R I VE Sbjct: 178 FEKDLMSDEKMRDIYKEIIRESLFCFLSDEIPYESDVIIDQFIEEERIDKVYAR--IIVE 235 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 + SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 236 KESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|238793772|ref|ZP_04637393.1| GTP-binding protein era [Yersinia intermedia ATCC 29909] gi|238726836|gb|EEQ18369.1| GTP-binding protein era [Yersinia intermedia ATCC 29909] Length = 284 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 151/279 (54%), Gaps = 13/279 (4%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMI 92 GKSTL+N +G KVSI + K QTTR + GI +E Q +++DTPG+ K + ++LM Sbjct: 2 GKSTLLNELLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61 Query: 93 RLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE- 146 R + S++ ++V VV+ + E+ VN ++ ++L +NK+D V + Sbjct: 62 RAASSSLGDVELVIFVVEGTNWTADDEMVVN------KLRSLQCPVLLAINKVDNVTDKT 115 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHF 206 +LL + +K + +SA KG D + + + +P A + D I+D Sbjct: 116 KLLPHIQFLSKQMNFLDVVPISAEKGMNVDTIASIVRKLMPEAGHHFPEDYITDRSQRFM 175 Query: 207 TAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQN 266 +EI REKL L +E+PYS V E++ + G I +I VER QKK+++G G Sbjct: 176 ASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNIHGLILVEREGQKKMVIGNKGSK 235 Query: 267 IKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IKTI +EA++++ ++ E VHL L+VKV+ W D + Sbjct: 236 IKTIGIEARQDMEQMFEAKVHLELWVKVKSGWADDERAL 274 >gi|68535678|ref|YP_250383.1| GTP-binding protein Era [Corynebacterium jeikeium K411] gi|68263277|emb|CAI36765.1| putative GTP-binding protein [Corynebacterium jeikeium K411] Length = 336 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 157/288 (54%), Gaps = 6/288 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RGIV +++QI+ +DTPG+ Sbjct: 43 RSGFVSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGIVHREDAQIILVDTPGL 102 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D++ + V + ++ I D ++ +A ++ LI ++ Sbjct: 103 HRPRTLLGERLNEVVKETYSDVDVIAMCVPADEKIGPGDRWIVDAVRSVAPKTP-LIGVV 161 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V +++ Q ++L+ VS+TK D +L+ L LP P Y D Sbjct: 162 TKLDKVSKDQVGAQLLALHELLDGADVVPVSSTKQVQLDVLLDVLRDQLPEGPKFYPDDH 221 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--WEEKKDGSILIRQVIYVERPSQ 255 ++D AE+ RE LH E+P+S V E+ +++G + + VIYVER Q Sbjct: 222 VTDDDRDTRMAELIREAALEGLHDELPHSVAVQIEEVVPNPQREGVLDVHAVIYVEREGQ 281 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I+ GK+G+ + I ++ EI ++L+Q ++L + +KV K+W DPK Sbjct: 282 KAILRGKDGRRLSRIVHRSRLEIVKMLDQNIYLDVHIKVAKNWQSDPK 329 >gi|307106708|gb|EFN54953.1| hypothetical protein CHLNCDRAFT_134713 [Chlorella variabilis] Length = 396 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 151/291 (51%), Gaps = 19/291 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 V ++G NAGKSTLVN G KVS V+ K TT G +E SQ+V DTPG+ + Sbjct: 104 VGVMGVPNAGKSTLVNVLAGFKVSAVSPKTNTTERPRLGAFTEGPSQVVLYDTPGVVDKL 163 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAK---------- 128 K++ H+ +R +W+ D++ L+VD+ REL+ +H L++E A Sbjct: 164 HYKNAAHRQRVRGTWAVAADCDLLLLLVDAARELQRADPRVHRLVEESASGARLGMPPGW 223 Query: 129 RSSRLILILNKIDCV-KPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 R +L+LNK D + +P+R LL A+ L E F VSA G G ++ +L Sbjct: 224 RPPPGVLVLNKCDAIARPQRAGLLPLADKLRALRPFEDVFFVSAKDGRGLPELRQFLLDR 283 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 W A +D E+ RE+LFL L+KE+PY + + + DGS+ I Sbjct: 284 ATPGEWALGAGMATDRGEEEQALEVVREQLFLRLYKEVPYETSLRVTSCLPQPDGSVHIE 343 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 + V + SQK I++G++G+ I + L A+KE+ + V L+L VKV K Sbjct: 344 MDVVVRKDSQKVIVVGRSGEAIGGVMLAAEKELRRMWGTGVRLVLTVKVHK 394 >gi|315586802|gb|ADU41183.1| GTP-binding protein Era [Helicobacter pylori 35A] Length = 301 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 160/294 (54%), Gaps = 19/294 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 ++ G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKVGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L E + A++ V + +SA K + +L + L + Sbjct: 119 LALSKIDTATHKQVLQKLQEYQQYASQFVDL---VPLSAKKSQNLNTLLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIY 249 W++ D +SD M EI RE LF L EIPY S V+ +K+ EE++ + R I Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAR--II 233 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 234 VEKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|240112364|ref|ZP_04726854.1| GTP-binding protein Era [Neisseria gonorrhoeae MS11] Length = 307 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 158/286 (55%), Gaps = 9/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 17 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILN 138 D + L RL+ + + V +VV +++ D +LK++ K + +IL++N Sbjct: 77 --QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRLTDADRVVLKQLPKHTP-VILVIN 133 Query: 139 KIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 KID K +R +A +A VSA G ++L L LP + +Y Sbjct: 134 KIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELLKPYLPESVPMYPE 193 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI REKLF +L +E+PY+ V E++EE DG I + V++ SQ Sbjct: 194 DMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-GDGLNRIYIAVLVDKESQ 252 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 253 KAILIGKGGERLKKISTEARLDMEKLFDNKVFLKVWVKVKSGWADD 298 >gi|194097975|ref|YP_002001023.1| GTP-binding protein Era [Neisseria gonorrhoeae NCCP11945] gi|254493165|ref|ZP_05106336.1| GTP-binding protein Era [Neisseria gonorrhoeae 1291] gi|268594307|ref|ZP_06128474.1| GTP-binding protein Era [Neisseria gonorrhoeae 35/02] gi|268596301|ref|ZP_06130468.1| GTP-binding protein Era [Neisseria gonorrhoeae FA19] gi|268598422|ref|ZP_06132589.1| GTP-binding protein Era [Neisseria gonorrhoeae MS11] gi|268600777|ref|ZP_06134944.1| GTP-binding protein Era [Neisseria gonorrhoeae PID18] gi|268603083|ref|ZP_06137250.1| GTP-binding protein Era [Neisseria gonorrhoeae PID1] gi|268683792|ref|ZP_06150654.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-92-679] gi|268686032|ref|ZP_06152894.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-93-1035] gi|291044413|ref|ZP_06570122.1| GTP-binding protein Era [Neisseria gonorrhoeae DGI2] gi|293399591|ref|ZP_06643744.1| GTP-binding protein Era [Neisseria gonorrhoeae F62] gi|193933265|gb|ACF29089.1| GTP-binding protein Era [Neisseria gonorrhoeae NCCP11945] gi|226512205|gb|EEH61550.1| GTP-binding protein Era [Neisseria gonorrhoeae 1291] gi|268547696|gb|EEZ43114.1| GTP-binding protein Era [Neisseria gonorrhoeae 35/02] gi|268550089|gb|EEZ45108.1| GTP-binding protein Era [Neisseria gonorrhoeae FA19] gi|268582553|gb|EEZ47229.1| GTP-binding protein Era [Neisseria gonorrhoeae MS11] gi|268584908|gb|EEZ49584.1| GTP-binding protein Era [Neisseria gonorrhoeae PID18] gi|268587214|gb|EEZ51890.1| GTP-binding protein Era [Neisseria gonorrhoeae PID1] gi|268624076|gb|EEZ56476.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-92-679] gi|268626316|gb|EEZ58716.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-93-1035] gi|291011307|gb|EFE03303.1| GTP-binding protein Era [Neisseria gonorrhoeae DGI2] gi|291610160|gb|EFF39282.1| GTP-binding protein Era [Neisseria gonorrhoeae F62] gi|317163729|gb|ADV07270.1| GTP-binding protein Era [Neisseria gonorrhoeae TCDC-NG08107] Length = 313 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 158/286 (55%), Gaps = 9/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 23 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 82 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILN 138 D + L RL+ + + V +VV +++ D +LK++ K + +IL++N Sbjct: 83 --QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRLTDADRVVLKQLPKHTP-VILVIN 139 Query: 139 KIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 KID K +R +A +A VSA G ++L L LP + +Y Sbjct: 140 KIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELLKPYLPESVPMYPE 199 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI REKLF +L +E+PY+ V E++EE DG I + V++ SQ Sbjct: 200 DMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-GDGLNRIYIAVLVDKESQ 258 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 259 KAILIGKGGERLKKISTEARLDMEKLFDNKVFLKVWVKVKSGWADD 304 >gi|262203045|ref|YP_003274253.1| GTP-binding protein Era [Gordonia bronchialis DSM 43247] gi|262086392|gb|ACY22360.1| GTP-binding protein Era [Gordonia bronchialis DSM 43247] Length = 302 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 152/292 (52%), Gaps = 10/292 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V VG N GKSTL N VG K++I +++ QTTR +RGIV+ ++Q++ +DTPG+ Sbjct: 5 RSGFVCFVGRPNTGKSTLTNALVGEKIAITSNRPQTTRHAIRGIVNRPDAQLILVDTPGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L T D++ + V + ++ I ++ +A +++ ++ I+ Sbjct: 65 HRPRTLLGQRLNDLVQDTFAEVDVIGVCVPADEKIGPGDKWIVSQVRHMAPKTT-VLGIV 123 Query: 138 NKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V PE++ Q +KL+ + VSA G D + + L S + P Y Sbjct: 124 TKIDRVGPEKVAAQLLALSKLLGPTSEVVPVSAKSGKQVDVLTDVLVSLMQPGPAFYPEG 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK-----WEEKKDGSILIRQVIYVE 251 +++D AE RE + E+P+S VV E+ E + + + ++YVE Sbjct: 184 ELTDESDDVLMAEFIREAALEGVRDELPHSLAVVIEEVIERDREPDQQPMLDVHAILYVE 243 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 R SQK I++G G +K + A+ +I +L V+L L VKV KDW DPK Sbjct: 244 RDSQKGIIIGHKGARLKEVGTVARAQIERLLGARVYLDLHVKVAKDWQRDPK 295 >gi|50955087|ref|YP_062375.1| GTP-binding protein Era [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648670|sp|Q6AEC6|ERA_LEIXX RecName: Full=GTPase Era gi|50951569|gb|AAT89270.1| GTP binding protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 297 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 151/290 (52%), Gaps = 7/290 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R+G V+ VG N GKSTL N VG K++I + K QTTR +RGI+ +E Q++ +DTP Sbjct: 3 DYRAGFVSFVGRPNVGKSTLTNALVGEKIAITSSKPQTTRRAIRGIMHRREGQLILVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLIL 135 G+ + + + L ST+ D++ V + + I++ L + + ++ + Sbjct: 63 GVHRPRTLLGERLNTLVESTLGDVDVIGFCVPADERIGPGDRFINERLDDYPR--AKKVA 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYS 194 I+ KID + ++ EQ + L E VSA D + L LP++P +Y Sbjct: 121 IVTKIDSARKTQVAEQLLAVSALREWEAIVPVSAVNSIQLDTLTTELMRLLPVSPGPLYP 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 + ++D + AE RE + + E+P+S V + E+ D +L I ++VER Sbjct: 181 DESVTDEGVEDRIAEYIREAVLDGVEDELPHSLAVTIDDLVERDDKDLLEIYANLFVERD 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++GK G I+ + A++ I +L + V L + VKV KDW DPK Sbjct: 241 SQKAIVIGKGGSRIREVGATAREPIEALLGRHVFLSIRVKVAKDWQRDPK 290 >gi|120609885|ref|YP_969563.1| GTP-binding protein Era [Acidovorax citrulli AAC00-1] gi|120588349|gb|ABM31789.1| GTP-binding protein Era [Acidovorax citrulli AAC00-1] Length = 344 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/298 (33%), Positives = 155/298 (52%), Gaps = 20/298 (6%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 Q R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + +Q VF+ Sbjct: 45 AQGPQRCGLIAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTMGAAQFVFV 104 Query: 76 DTPGIFNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 DTPG F K S +K + + I D++ VV++ + L + K Sbjct: 105 DTPG-FQTKHSTALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVL--SLFKPGIPT 161 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCST-LP 187 +LI NK+D V +AEIA L +++ F+ + K G + L +C LP Sbjct: 162 LLIANKLDTVH-----RRAEIAPWLKGMQERHPFAEFVPMSAKNKGDIERLFGICEKYLP 216 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS----IL 243 PW Y+ D+++D +E REKLF E+PY+S VV +K+EE+ + + Sbjct: 217 EQPWWYAEDELTDRSEKFLASETVREKLFRFTGDELPYTSTVVIDKFEEEPSKTHKRFVR 276 Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + I VER K +++G+ G+ +K IS +A+ E+ ++L V L ++VKV+ W D Sbjct: 277 VAATIVVERDGHKAMVIGEKGERLKRISTDARMELEKLLGAKVFLEVWVKVRSGWADD 334 >gi|224534465|ref|ZP_03675041.1| GTP-binding protein Era [Borrelia spielmanii A14S] gi|224514142|gb|EEF84460.1| GTP-binding protein Era [Borrelia spielmanii A14S] Length = 290 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/288 (30%), Positives = 157/288 (54%), Gaps = 11/288 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDGRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M+ S+I +++ ++D + + +L+ I + ++++NK+ Sbjct: 62 HLSKKKFNIAMMNNIRSSIGEVELILYMIDIQDKPGEEENKMLEIIKNSKVKFLVLINKV 121 Query: 141 DCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D + + L+ EI + + +SA K +++ N + P Y Sbjct: 122 DLKNTKIKEITQFLKAKEIEDSNI-----IKISAEKKINTEELKNKIYENFSEGPLYYPQ 176 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 + +D + +EI REK +L +E+PYS V + E KK G + +R I+V SQ Sbjct: 177 EYYTDQKINFRISEIIREKAIENLKEELPYSLYVDIDTLENKKKG-LFVRANIFVANESQ 235 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I++GKNG+ IK+I +A+K IA+I E +L L VK++K+W + K Sbjct: 236 KGIVVGKNGKEIKSIGEKARKTIAKIFETKCNLFLQVKLKKNWNKEDK 283 >gi|59800711|ref|YP_207423.1| GTP-binding protein Era [Neisseria gonorrhoeae FA 1090] gi|239998446|ref|ZP_04718370.1| GTP-binding protein Era [Neisseria gonorrhoeae 35/02] gi|240013571|ref|ZP_04720484.1| GTP-binding protein Era [Neisseria gonorrhoeae DGI18] gi|240016010|ref|ZP_04722550.1| GTP-binding protein Era [Neisseria gonorrhoeae FA6140] gi|240080150|ref|ZP_04724693.1| GTP-binding protein Era [Neisseria gonorrhoeae FA19] gi|240115104|ref|ZP_04729166.1| GTP-binding protein Era [Neisseria gonorrhoeae PID18] gi|240117387|ref|ZP_04731449.1| GTP-binding protein Era [Neisseria gonorrhoeae PID1] gi|240120640|ref|ZP_04733602.1| GTP-binding protein Era [Neisseria gonorrhoeae PID24-1] gi|240125196|ref|ZP_04738082.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-92-679] gi|240127652|ref|ZP_04740313.1| GTP-binding protein Era [Neisseria gonorrhoeae SK-93-1035] gi|260441081|ref|ZP_05794897.1| GTP-binding protein Era [Neisseria gonorrhoeae DGI2] gi|59717606|gb|AAW89011.1| putative GTPase [Neisseria gonorrhoeae FA 1090] Length = 311 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 158/286 (55%), Gaps = 9/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 21 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 80 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILN 138 D + L RL+ + + V +VV +++ D +LK++ K + +IL++N Sbjct: 81 --QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRLTDADRVVLKQLPKHTP-VILVIN 137 Query: 139 KIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 KID K +R +A +A VSA G ++L L LP + +Y Sbjct: 138 KIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELLKPYLPESVPMYPE 197 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI REKLF +L +E+PY+ V E++EE DG I + V++ SQ Sbjct: 198 DMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-GDGLNRIYIAVLVDKESQ 256 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 257 KAILIGKGGERLKKISTEARLDMEKLFDNKVFLKVWVKVKSGWADD 302 >gi|317009507|gb|ADU80087.1| GTP-binding protein Era [Helicobacter pylori India7] Length = 301 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 160/294 (54%), Gaps = 19/294 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L++ + K F+ +SA K + +L + L + Sbjct: 119 LALSKIDTATHKQVLQKLQEYQKYA---SQFLALVPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIY 249 W++ D +SD M EI RE LF+ L EIPY S V+ +K+ EE++ + R I Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFVFLSDEIPYESDVMIDKFIEEERIDKVYAR--II 233 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ + V L L V QK W + K Sbjct: 234 VEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGGKKVFLNLQVIAQKSWSKEEK 287 >gi|308184324|ref|YP_003928457.1| GTP-binding protein Era [Helicobacter pylori SJM180] gi|308060244|gb|ADO02140.1| GTP-binding protein Era [Helicobacter pylori SJM180] Length = 301 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 160/291 (54%), Gaps = 13/291 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMSDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L L+KID +++L++ + K F++ +SA K + +L + L + W+ Sbjct: 119 LALSKIDTATHKQVLQKLQEYQKYASQFLD-LVPLSAKKSQNLNALLECISKHLSPSAWL 177 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 + D +SD M EI RE LF L EIPY S V+ +K+ E++ + +I VE+ Sbjct: 178 FEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAHII-VEK 236 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 237 ESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|219685709|ref|ZP_03540522.1| GTP-binding protein Era [Borrelia garinii Far04] gi|219672759|gb|EED29785.1| GTP-binding protein Era [Borrelia garinii Far04] Length = 290 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 159/288 (55%), Gaps = 3/288 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG A++G + GKSTL+N G K+SI++ QTTR+ ++GI ++ QI+F+DTPG Sbjct: 2 KSGFAAILGRPSTGKSTLLNSICGHKISIISPIPQTTRNKIKGIFTDDRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ M++ S+I +++ ++D + + +L+ I + ++++NK+ Sbjct: 62 HLSKKKFNIAMMKNIHSSIGEVELILYIIDIQDKPGEEENKMLEIIKNSKIKFLVLINKV 121 Query: 141 DCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K ++ E + + K + +SA K +++ N + P Y + + Sbjct: 122 D-LKNTKIKEITQFLKEKGIEDNNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYYT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D + +EI REK +L +E+PYS V + E KK S+ IR I+V SQK I+ Sbjct: 181 DQEINFRISEIIREKAIENLKEELPYSLYVDIDTLENKKR-SLFIRANIFVANESQKGII 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GKNG+ IK+I A+K IA+I E +L L VK++K+W + K + Sbjct: 240 VGKNGKEIKSIGERARKTIAKIFETKCNLFLQVKLKKNWNKEDKLIKR 287 >gi|108562916|ref|YP_627232.1| GTP-binding protein Era [Helicobacter pylori HPAG1] gi|122980523|sp|Q1CU14|ERA_HELPH RecName: Full=GTPase Era gi|107836689|gb|ABF84558.1| GTP-binding protein era-like protein [Helicobacter pylori HPAG1] Length = 301 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 160/294 (54%), Gaps = 19/294 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 NKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L++ + + F+ +SA K + +L + L + Sbjct: 119 LALSKIDMATHKQVLQKLQEYQQY---NSQFLALVPLSAKKSQNLNALLECISKHLIPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIY 249 W++ D +SD M EI RE LF L EIPY S VV +K+ EE++ + R I Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVVIDKFIEEERIDKVYAR--II 233 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 234 VEKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|208434439|ref|YP_002266105.1| GTP-binding protein era-like protein [Helicobacter pylori G27] gi|226741218|sp|B5Z6P0|ERA_HELPG RecName: Full=GTPase Era gi|208432368|gb|ACI27239.1| GTP-binding protein era-like protein [Helicobacter pylori G27] Length = 301 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 160/291 (54%), Gaps = 13/291 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLNLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L L+KID +++L++ + K F++ +SA K + +L + L + W+ Sbjct: 119 LALSKIDTATHKQVLQKLQEYQKYSSQFLD-LVPLSAKKSQNLNTLLECISKYLSPSAWL 177 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 + D +SD M EI RE LF L EIPY S V+ +K+ E++ + +I VE+ Sbjct: 178 FEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAHII-VEK 236 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 237 ESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|317180293|dbj|BAJ58079.1| GTP-binding protein Era [Helicobacter pylori F32] Length = 301 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 160/294 (54%), Gaps = 19/294 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMFSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L ++KID +++L E + A++ + + +SA K + +L + L + Sbjct: 119 LAVSKIDTATHKQVLQKLQEYQQYASQFLAL---VPLSAKKSQNLNTLLECISQHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIY 249 W++ D +SD M EI RE LF L EIPY S V+ +K+ EE++ + R I Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVIIDKFIEEERIDKVYAR--II 233 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 234 VEKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|254252844|ref|ZP_04946162.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] gi|124895453|gb|EAY69333.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] Length = 299 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 155/285 (54%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTIDDAQFVFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D++ V+++ R + +L I L LI N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDVILFVIEAGR-FGPDDQKVLDLIPPGMPTL-LITN 126 Query: 139 KIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID V + L + + L + +SA + +L+ + LP +Y D+ Sbjct: 127 KIDRVSDKTTLYPFMQQMSALREFAELVPLSAKQPDDIKRLLDTIKPYLPEGEPIYGEDE 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+EE +G + I I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVLIDKFEE--EGRLKRIFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G+ +K IS EA+ ++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGEKLKQISTEARMDMEKLFDGPVYLETFVKVKSGWADN 289 >gi|121634485|ref|YP_974730.1| GTP-binding protein Era [Neisseria meningitidis FAM18] gi|313668837|ref|YP_004049121.1| GTPase [Neisseria lactamica ST-640] gi|189037658|sp|A1KSV0|ERA_NEIMF RecName: Full=GTPase Era gi|120866191|emb|CAM09931.1| putative GTPase [Neisseria meningitidis FAM18] gi|313006299|emb|CBN87762.1| putative GTPase [Neisseria lactamica 020-06] gi|325133798|gb|EGC56454.1| GTP-binding protein Era [Neisseria meningitidis M13399] gi|325137909|gb|EGC60484.1| GTP-binding protein Era [Neisseria meningitidis ES14902] gi|325141940|gb|EGC64380.1| GTP-binding protein Era [Neisseria meningitidis 961-5945] gi|325197907|gb|ADY93363.1| GTP-binding protein Era [Neisseria meningitidis G2136] gi|325202517|gb|ADY97971.1| GTP-binding protein Era [Neisseria meningitidis M01-240149] gi|325206469|gb|ADZ01922.1| GTP-binding protein Era [Neisseria meningitidis M04-240196] gi|325207733|gb|ADZ03185.1| GTP-binding protein Era [Neisseria meningitidis NZ-05/33] Length = 307 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 158/286 (55%), Gaps = 9/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 17 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILN 138 D + L RL+ + + V +VV ++ D +LK++ K + +IL++N Sbjct: 77 --QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTP-VILVVN 133 Query: 139 KIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 KID K +R +A +A VSA G ++L L LP + +Y Sbjct: 134 KIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELLKPYLPESVPMYPE 193 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V++ SQ Sbjct: 194 DMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVDKESQ 252 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 253 KAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 298 >gi|145353386|ref|XP_001420995.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145357385|ref|XP_001422900.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581231|gb|ABO99288.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144583144|gb|ABP01259.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 287 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/288 (30%), Positives = 150/288 (52%), Gaps = 19/288 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 V ++GA NAGKS L VG VS V+ K TTR+ G+ + ++Q+VF+D PGI Sbjct: 1 VGVLGAPNAGKSALACALVGDAVSAVSRKTNTTRTRALGVRTVGDAQVVFVDAPGIVGRE 60 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-------- 133 +++ H + + + D + VVD+ R+L+ +L+ + K + L Sbjct: 61 HYRNAAHARKVEDATALASECDALVFVVDAARQLERRDLRVLEAVRKTRAALGEMRAPPE 120 Query: 134 -ILILNKIDCVKPER------LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +L+LNK+D + ER +++ A F + F VSA G G +++++ + Sbjct: 121 AVLVLNKVDKIPKERRAGLTKMVDDFRAAGDFEF-ARVFPVSALTGAGTRALMDHIVAGA 179 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQ 246 APW + A SD+ EI RE ++ +H+++PY + WE+ ++G I Q Sbjct: 180 REAPWEFDATSTSDMTPAQRALEIVRESVYDGVHEDLPYGIDIAHVSWEDFRNGDARIEQ 239 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 I V+ SQ+KI++GK+G+ + I + A+ + L + VHLIL V++ Sbjct: 240 NILVDTASQRKIVVGKSGEVVGRIGINARAMLERALNRKVHLILNVRL 287 >gi|254673608|emb|CBA09133.1| GTP-binding protein Era [Neisseria meningitidis alpha275] gi|325131859|gb|EGC54559.1| GTP-binding protein Era [Neisseria meningitidis M6190] gi|325135721|gb|EGC58333.1| GTP-binding protein Era [Neisseria meningitidis M0579] gi|325143925|gb|EGC66235.1| GTP-binding protein Era [Neisseria meningitidis M01-240013] Length = 311 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 158/286 (55%), Gaps = 9/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 21 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 80 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILN 138 D + L RL+ + + V +VV ++ D +LK++ K + +IL++N Sbjct: 81 --QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTP-VILVVN 137 Query: 139 KIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 KID K +R +A +A VSA G ++L L LP + +Y Sbjct: 138 KIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELLKPYLPESVPMYPE 197 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V++ SQ Sbjct: 198 DMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVDKESQ 256 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 257 KAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 302 >gi|153208710|ref|ZP_01946957.1| GTP-binding protein Era [Coxiella burnetii 'MSU Goat Q177'] gi|154707451|ref|YP_001423900.1| GTP-binding protein Era [Coxiella burnetii Dugway 5J108-111] gi|165919312|ref|ZP_02219398.1| GTP-binding protein Era [Coxiella burnetii RSA 334] gi|212219221|ref|YP_002306008.1| GTP-binding protein Era [Coxiella burnetii CbuK_Q154] gi|189037264|sp|A9KFA1|ERA_COXBN RecName: Full=GTPase Era gi|226741202|sp|B6J4J8|ERA_COXB1 RecName: Full=GTPase Era gi|120575821|gb|EAX32445.1| GTP-binding protein Era [Coxiella burnetii 'MSU Goat Q177'] gi|154356737|gb|ABS78199.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111] gi|165916972|gb|EDR35576.1| GTP-binding protein Era [Coxiella burnetii RSA 334] gi|212013483|gb|ACJ20863.1| GTP-binding protein era [Coxiella burnetii CbuK_Q154] Length = 295 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 158/286 (55%), Gaps = 7/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G A++G N GKSTL+N+ +G K+SI + K QTTR + G+ + K+ Q++++DTPG+ Sbjct: 7 GYAAIIGRPNVGKSTLLNQLLGQKISITSRKPQTTRYQILGVKTFKDIQVIYVDTPGLHA 66 Query: 83 AKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELK-VNIHDLLKEIAKRSSRLILILNKI 140 + + ++ M R + ++ D + V++ H E + + D LKEI + + L++NK+ Sbjct: 67 GTERTINRYMNRTARGALRDVDAIVFVIEPHWESQDAWVLDNLKEI---ETPVFLVINKV 123 Query: 141 DCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K LL E + L +K +SA G + + +P +P+ + +Q++ Sbjct: 124 DKIKNRAELLPLIEKVSSLYAFQKIIPLSAKTGDQVGTLEQAVHQLMPESPFYFPPEQVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL L +EIPYS V ++ K++ I I VI+VE+ SQK I+ Sbjct: 184 DRSDQFMASEIIREKLMRLLGQEIPYSLAVTLIEF-RKEEKIIRISAVIWVEKKSQKGIV 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +GK G+ +K + A+ ++ + + V L L+VKV+ W + + Sbjct: 243 IGKGGERLKRVGTNARLDMEKWFGKKVFLQLWVKVKSGWADNERLL 288 >gi|282897000|ref|ZP_06305002.1| Small GTP-binding protein, era -like protein [Raphidiopsis brookii D9] gi|281197652|gb|EFA72546.1| Small GTP-binding protein, era -like protein [Raphidiopsis brookii D9] Length = 308 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/285 (31%), Positives = 157/285 (55%), Gaps = 6/285 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG + ++G N GKSTL+N+ +G K++I + QTTR+ +RGI++ +++Q++F+DTP Sbjct: 13 NFKSGFIGIIGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTREKAQLIFVDTP 72 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI +++++ + I D+V VVD + ++K +I+ +N Sbjct: 73 GIHKPHHPLGEVLVQNAKIAITSVDVVLFVVDGTAVCGGGDRFIADLLSKCEIPVIMGIN 132 Query: 139 KID--CVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 KID V+ E++ E E+A + + + SA + G ++ + L L P Y Sbjct: 133 KIDQQPVETEKIDESYRELARENQW--QIVKFSALENQGILELEDLLIEQLETGPLYYPP 190 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P E+ RE++ L +E+P+S + + EE + ++ I VER SQ Sbjct: 191 DLVTDQPERFIMGELIREQILLLTREEVPHSVAIAIDLVEENPTITRVV-ATINVERDSQ 249 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 K I++GK G +K+I A+++I +++ VHL LFVKVQ W H Sbjct: 250 KGILIGKGGTMLKSIGTVARQQIQKLIAGKVHLELFVKVQPKWRH 294 >gi|297622464|ref|YP_003703898.1| GTP-binding protein Era [Truepera radiovictrix DSM 17093] gi|297163644|gb|ADI13355.1| GTP-binding protein Era [Truepera radiovictrix DSM 17093] Length = 324 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/298 (34%), Positives = 159/298 (53%), Gaps = 21/298 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES----QIVFLDT 77 SG VA++G N GKSTL+N F+G KV+ +T K QTTR VRG+ +++++ Q+VF+DT Sbjct: 27 SGFVAILGKPNVGKSTLLNTFLGVKVAPITPKPQTTRRGVRGVYTDRQASEVRQLVFVDT 86 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK------RSS 131 PG AKD+ + M R + + D++ VVD L+ D KE+A+ S+ Sbjct: 87 PGFHRAKDALGEFMNREVRAAVVDVDVILWVVD----LRRPPSDEDKEVARLLRGLDPST 142 Query: 132 RLILILNKIDCVK-PERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNY-LCSTLPL 188 R+ L+ NK+D K P+ E E+ +LV + +T+ +SA + L L L Sbjct: 143 RVYLVGNKLDAAKYPD---EALELYGELVPNVSRTYRLSALEDPEAVYALRAELLGELAE 199 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK-DGSILIRQV 247 P + D SD + AEI RE HL +E+PY+ V +W + + D + + Sbjct: 200 GPLFFPEDIRSDQSRETWAAEIIRESAMTHLRQELPYAVAVQVLQWRDPEGDEPLYLMAE 259 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++VER + + I+LGK G I+ I A+K++ L V L L V V++ W DP+ Sbjct: 260 LWVERANHRMIVLGKGGSMIREIGRSARKQLEVFLGHRVFLELEVVVRRAWREDPEAL 317 >gi|160872884|ref|ZP_02063016.1| GTP-binding protein Era [Rickettsiella grylli] gi|159121683|gb|EDP47021.1| GTP-binding protein Era [Rickettsiella grylli] Length = 294 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 153/276 (55%), Gaps = 6/276 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 G +A++G N GKSTL+N+ +G K++I + K QTTR + GI ++ +Q ++ DTPGI Sbjct: 9 GKIAIIGRPNVGKSTLLNKILGEKLTITSSKPQTTRDQILGIKTDLHTQFIYKDTPGILQ 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 NA + R + + D++ V+++ R +L+ I +ILI+NK+D Sbjct: 69 NAGRRLSRTFTRSAIQALIDVDLIGFVIEADRWTNEE-AAILERIKPLKRPVILIINKVD 127 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + RLL + + + +SA KG D++ + LP A ++Y DQ++D Sbjct: 128 KINDKHRLLPFLKCCYQKMSFLAIVPISALKGQNIDELEKVIAKALPHAAFIYPPDQLTD 187 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVERPSQKKIM 259 E REKL +LH+EIPY V E++ EEKK I I +I+ E QK I+ Sbjct: 188 RSQRFLVGEFIREKLMRYLHQEIPYGLTVSIEQFIEEKK--IIKISALIWAEHSRQKAII 245 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 +GK G+ +K I+ EA+K+I L + ++L +++K++ Sbjct: 246 IGKKGELLKKIASEARKDIEAFLHKKIYLDVWIKIK 281 >gi|197122610|ref|YP_002134561.1| GTP-binding protein Era [Anaeromyxobacter sp. K] gi|196172459|gb|ACG73432.1| GTP-binding protein Era [Anaeromyxobacter sp. K] Length = 310 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 155/290 (53%), Gaps = 13/290 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL+NR +G V+IV+ + QTTR+ + G+ + +Q+ F DTPG+ Sbjct: 10 RAGFVAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQVAFFDTPGL 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHD----LLKEIAKRSSRLI 134 AK + ++ M+ + ST+ D V +++++ E +V + + + E+ + + Sbjct: 70 HKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPEGRVEVGESTRWAIDEVRRARKPAV 129 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL--APWV 192 L +NK+D LL + L SA G D ++ L LP AP + Sbjct: 130 LGVNKMDRAPRATLLPVIDAYRGLHDWADIVPFSALTGENVDTLVQALIRRLPESDAP-L 188 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE----KKDGSILIRQVI 248 + AD ++D AE RE++ L +EIPYS+ V E+++E ++ G + I ++ Sbjct: 189 FPADVLTDQAERALAAEYVREQVMLQTRQEIPYSAAVEVEEFDESGRRERGGLVRISALV 248 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VER SQK I++GK G +K I A++ + +L V L L VKV + W Sbjct: 249 VVERDSQKAIVIGKQGAMLKKIGTRAREGLERLLGCKVFLSLTVKVDERW 298 >gi|290960557|ref|YP_003491739.1| GTP-binding protein [Streptomyces scabiei 87.22] gi|260650083|emb|CBG73199.1| GTP-binding protein [Streptomyces scabiei 87.22] Length = 320 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 158/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I + QTTR VRGIV ++Q++ +DTPG+ Sbjct: 20 RAGFACFVGRPNAGKSTLTNALVGQKVAITADQPQTTRHTVRGIVHRPDAQLILVDTPGL 79 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + ++ +L + KE+A + + I I Sbjct: 80 HKPRTLLGQRLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELASIKKTPKIAI 136 Query: 137 LNKIDCVKPERLLEQ----AEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V+ ++L EQ ++ +L F + VSA D + + L LP P Sbjct: 137 VTKTDLVESKQLAEQLIAIDQLGKELGFEWAEIVPVSAVADKQVDLLADLLVPLLPEGPA 196 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQ 246 +Y ++D P AE+ RE + E+P+S VV E+ ++D + I Sbjct: 197 LYPEGDLTDEPEQVMIAELIREAALEGVRDELPHSIAVVVEEMLPREDRPADRPLLDIHA 256 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G+ +K + ++++K+I +L PV L L VKV KDW DP+ Sbjct: 257 FVYIERPSQKGIIIGPKGKRLKEVGIKSRKQIEALLGTPVFLDLHVKVAKDWQRDPR 313 >gi|227504556|ref|ZP_03934605.1| GTP-binding protein Era [Corynebacterium striatum ATCC 6940] gi|227198876|gb|EEI78924.1| GTP-binding protein Era [Corynebacterium striatum ATCC 6940] Length = 329 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 162/310 (52%), Gaps = 9/310 (2%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 GE + ++ D + RSG V+ VG N GKSTL N VG K++I ++ +TTR +RG Sbjct: 16 GEALDYTDYTD-TPEGFRSGFVSFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRG 74 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 +V +++Q++ +DTPG+ + + + + T D++ L + + ++ +L Sbjct: 75 LVHREDAQVIVVDTPGLHRPRTLLGERLNEMVKDTYADVDVIGLTIPADEKIGPGDRWIL 134 Query: 124 KEIAKRSSR--LILILNKIDCVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDD 177 + + K + + +I I+ K+D +++ Q ++L+ + VSAT+ D+ Sbjct: 135 ENVRKVAPKTPIIGIVTKLDKASKDQVGAQLLALHELLSEDNPDAVVIPVSATQRVQLDE 194 Query: 178 VLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--E 235 + + LP P Y D I+D +E+ RE L E+P+S V ++ + Sbjct: 195 LTQVIVDHLPEGPKFYPDDHITDEEQEKRISELIREAALAGLKDELPHSVAVSVDEMLPD 254 Query: 236 EKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 E + + I V+Y+ERP QK+I+ GK+G+ I A+KEI ++L Q V+L L +KV Sbjct: 255 ETRPDVLNIHAVLYLERPGQKRIIEGKDGRRFMRIVGTARKEIIQLLGQNVYLDLRIKVL 314 Query: 296 KDWGHDPKCC 305 K+W DPK Sbjct: 315 KNWQSDPKML 324 >gi|225021779|ref|ZP_03710971.1| hypothetical protein CORMATOL_01807 [Corynebacterium matruchotii ATCC 33806] gi|224945475|gb|EEG26684.1| hypothetical protein CORMATOL_01807 [Corynebacterium matruchotii ATCC 33806] Length = 291 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 153/283 (54%), Gaps = 7/283 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 VG N GKSTL N VG K++I ++ +TTR +RGIV ++QI+ +DTPG+ + Sbjct: 3 FVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGIVHRDDAQIIVVDTPGLHRPRTL 62 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKIDCV 143 + + + T D++ + + + ++ I D ++++A ++ L+ I+ KID V Sbjct: 63 LGERLNEVVKDTYADMDLIAITIPADEKIGPGDRWILDNVRKVAPKTP-LMGIVTKIDKV 121 Query: 144 KPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 +++ Q +KL+ + + VSA G D +L+ + S LP P Y D ++D Sbjct: 122 SRDQVALQLMALHKLLGEDSEVVPVSAVTGEQRDILLDVITSLLPEGPKFYPDDHVTDDD 181 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--GSILIRQVIYVERPSQKKIML 260 AE+ RE L E+P+S V ++ D G++ + +IYVERP QK I++ Sbjct: 182 TNTRIAELVREAALSGLKDELPHSVAVEVDEIIPNPDRPGTLDVHVIIYVERPGQKTILM 241 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 GKNG+ I A+ +I ++L+ V+L L +KV K+W DPK Sbjct: 242 GKNGRRFNGIIHAARPQICKLLDSNVYLDLRIKVLKNWQSDPK 284 >gi|296113913|ref|YP_003627851.1| GTP-binding protein Era [Moraxella catarrhalis RH4] gi|295921607|gb|ADG61958.1| GTP-binding protein Era [Moraxella catarrhalis RH4] gi|326561463|gb|EGE11813.1| GTP-binding protein Era [Moraxella catarrhalis 46P47B1] gi|326568471|gb|EGE18551.1| GTP-binding protein Era [Moraxella catarrhalis BC7] Length = 331 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/320 (30%), Positives = 167/320 (52%), Gaps = 27/320 (8%) Query: 6 ITFFNEHKDFVQDNS-RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 I+ F E++ ++ S R+G VA+VG N GKSTL+N +G K+SI + K QTTR + GI Sbjct: 14 ISAFFENRSIPKNESFRAGFVAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGI 73 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-----LKVNI 119 +++++ QIVF+DTPGI H +R+ + A I L ++ Sbjct: 74 LTDEDRQIVFVDTPGI-------HSKEVRVINERMNKAAISALADVDVVLFVVDGIQWRE 126 Query: 120 HDL--LKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 DL L++++ + +IL++NK D VK + +LL E ++ VSA + H D Sbjct: 127 DDLLTLEKLSATNLPVILVINKADTVKDKSKLLPVIESFSESFDFADIIPVSALRRHNLD 186 Query: 177 DVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE 236 + + + LP+ P ++ A+QI+D +EI REK+ E+PY V + +++ Sbjct: 187 RLQSVIGEYLPIRPAIFDAEQITDRSERFLASEIIREKIMRISGDEVPYDLTVQIDTFKD 246 Query: 237 K-----------KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQP 285 + + I I+VER QK I++G G IK + ++A+K++ + ++ Sbjct: 247 EPAHKDPETGKWRKAVTFIDATIFVERAGQKSIIIGDKGAKIKQVGIDARKDMEVLFDRK 306 Query: 286 VHLILFVKVQKDWGHDPKCC 305 + L L+VKV++ W D + Sbjct: 307 IMLTLWVKVKRGWSDDERAL 326 >gi|260220752|emb|CBA28631.1| GTP-binding protein era homolog [Curvibacter putative symbiont of Hydra magnipapillata] Length = 393 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 154/298 (51%), Gaps = 24/298 (8%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 R G VA+VG N GKSTL+N VG K+SI + K QTTR + G+ +E ++Q VF+DTP Sbjct: 95 GQRCGLVAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMRTEGQTQFVFVDTP 154 Query: 79 GIFNA-KDSYHKLMIRLSWSTIKHADIVCLVVD--SHRELKVNIHDLLKEIAKRSSRLIL 135 G ++ +K + + + D+V VV+ S + LL E ++L Sbjct: 155 GFQTIHGNALNKSLNKAVQGAVSDVDLVLFVVEAGSFTSADEKVLKLLGE----GIPVVL 210 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEK----TFMV--SATKGHGCDDVLNYLCSTLPLA 189 + NK+D VK E+A +A L ++ T M+ SA D +L LP Sbjct: 211 VANKLDNVK-----ERAGLAPWLQAMQARAKFTEMIPLSAKNAKDIDRLLGICEKFLPEQ 265 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE----KKDGSILIR 245 W YS D+++D +E+ REKLF E+PY+S VV +K+EE KK L+R Sbjct: 266 AWWYSEDELTDRSEKFLASELVREKLFRLTGDELPYTSTVVIDKFEEEPPQKKGQKRLLR 325 Query: 246 --QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I VER K +++G G+ IK I +E + E+ ++ + V L L+VKV+ W D Sbjct: 326 IAATIVVERDGHKAMVIGDKGERIKRIGMETRVELEKLADAKVFLELWVKVRSGWADD 383 >gi|171057288|ref|YP_001789637.1| GTP-binding protein Era [Leptothrix cholodnii SP-6] gi|170774733|gb|ACB32872.1| GTP-binding protein Era [Leptothrix cholodnii SP-6] Length = 348 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 155/302 (51%), Gaps = 13/302 (4%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 +E V +N G +A+VG N GKSTL+N +G KVSI + K QTTR + GI + + Sbjct: 44 DETAAIVHENPHCGLIAIVGRPNVGKSTLLNTLIGQKVSITSRKAQTTRHRITGICTHGD 103 Query: 70 SQIVFLDTPGI-----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 +Q VF+DTPG + ++ + + S + D+V VV++ R + L Sbjct: 104 TQFVFVDTPGFQTRHTNRGTSALNRNLNKTVQSVLGDVDVVLFVVEAGRFGPDDAKVLAL 163 Query: 125 EIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + +L+ NK+D V+ L ++ + F E ++ATK +LN + Sbjct: 164 LPPGRPT--LLVANKLDMVQRRADLMPWLQQMQARHPFTE-FVPLTATKEEDTKRLLNIV 220 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI 242 LP PW Y D ++D AE+ REKLF E+PY+S V +K+EE+ G + Sbjct: 221 RPYLPEQPWYYDEDALTDRSDKFLAAELIREKLFRLTGDELPYTSTVQIDKYEEE--GRL 278 Query: 243 -LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I I VER S K I++G G+ +K I EA+ E+ ++ + V L L+VKV+ W D Sbjct: 279 RRIAATIIVERDSHKGIVIGDGGERLKRIGTEARVELEKLGDCKVFLELWVKVRSGWADD 338 Query: 302 PK 303 K Sbjct: 339 EK 340 >gi|288574808|ref|ZP_06393165.1| GTP-binding protein Era [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570549|gb|EFC92106.1| GTP-binding protein Era [Dethiosulfovibrio peptidovorans DSM 11002] Length = 309 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 155/290 (53%), Gaps = 11/290 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + RSG VA+VG N GKS+LVN + K +IV+ K QTTR+ +R I + QIVF DT Sbjct: 8 EGYRSGVVAVVGRPNVGKSSLVNALLRCKATIVSPKPQTTRNRIRCIADVEGGQIVFTDT 67 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-LKVNIHDLLKEIAKRSSRLILI 136 PGI + + ++ + + AD++ V+ + E + +++ + ++ +I++ Sbjct: 68 PGIHKPQHRLGEAIVDSALVALDDADLILYVISAQDEGITGQDRHIIERLKNSNTPVIMV 127 Query: 137 LNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D + K ++L + K + VSA + + +++++ +P P +Y Sbjct: 128 INKVDLLGSKKAKILPLIDTYRKKLNPMDVLPVSAREDINLETLMDFILEHIPEGPPMYM 187 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV------VTEKWEEKKDGSILIRQVI 248 D + D AEI RE++ L +E+P+S V E++ E++D IR VI Sbjct: 188 EDMLIDRSSRFLAAEIIREQVLLRTDQEVPHSVAVEILEYKSPEEYPERRD--TYIRGVI 245 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +VER QK I+LG G+ +K I A++ + L V L L++KV+KDW Sbjct: 246 FVERRGQKLILLGSGGEKMKEIGTAAREALESFLGGKVFLDLWIKVRKDW 295 >gi|238784188|ref|ZP_04628201.1| GTP-binding protein era [Yersinia bercovieri ATCC 43970] gi|238714897|gb|EEQ06896.1| GTP-binding protein era [Yersinia bercovieri ATCC 43970] Length = 284 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 150/279 (53%), Gaps = 13/279 (4%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMI 92 GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ K + ++LM Sbjct: 2 GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61 Query: 93 RLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE- 146 R + S++ ++V VV+ + E+ VN ++ ++L +NK+D V + Sbjct: 62 RAASSSLGDVELVIFVVEGTNWTADDEMVVN------KLRSLDCPVLLAINKVDNVTDKS 115 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHF 206 +LL + +K + +SA KG D + + +P A + D I+D Sbjct: 116 KLLPHIQFLSKQMNFLDVVPISAEKGMNVDTIAGIVRKLMPEAEHHFPEDYITDRSQRFM 175 Query: 207 TAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQN 266 +EI REKL L +E+PYS V E++ + G I +I VER QKK+++G G Sbjct: 176 ASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNIHGLILVEREGQKKMVIGNKGSK 235 Query: 267 IKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IKTI +EA++++ ++ E VHL L+VKV+ W D + Sbjct: 236 IKTIGIEARQDMEKMFEAKVHLELWVKVKSGWADDERAL 274 >gi|238788223|ref|ZP_04632018.1| GTP-binding protein era [Yersinia frederiksenii ATCC 33641] gi|238723810|gb|EEQ15455.1| GTP-binding protein era [Yersinia frederiksenii ATCC 33641] Length = 284 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/279 (33%), Positives = 151/279 (54%), Gaps = 13/279 (4%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMI 92 GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ K + ++LM Sbjct: 2 GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61 Query: 93 RLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE- 146 R + S+I ++V VV+ + E+ VN LK ++L +NK+D V + Sbjct: 62 RAASSSIGDVELVIFVVEGTNWTADDEMVVNKLRSLK------CPVLLAINKVDNVTDKT 115 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHF 206 +LL + ++ + +SA KG D + + + LP A + D I+D Sbjct: 116 KLLPHIQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKILPEAGHHFPEDYITDRSQRFM 175 Query: 207 TAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQN 266 +EI REKL L +E+PYS V E++ + G I +I VER QKK+++G G Sbjct: 176 ASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNIHGLILVEREGQKKMVIGNKGSK 235 Query: 267 IKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IKTI +EA++++ ++ + VHL L+VKV+ W D + Sbjct: 236 IKTIGIEARQDMEQMFDAKVHLELWVKVKSGWADDERAL 274 >gi|308182671|ref|YP_003926798.1| GTP-binding protein Era [Helicobacter pylori PeCan4] gi|308064856|gb|ADO06748.1| GTP-binding protein Era [Helicobacter pylori PeCan4] Length = 301 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 160/293 (54%), Gaps = 17/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L E + A++ V + +SA K + +L + L + Sbjct: 119 LALSKIDTATHKQVLQKLQEYQQYASQFVDL---VPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W++ D +SD M EI RE LF L EIPY S V+ +K+ E++ + +I V Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAHII-V 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 E+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 EKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|109947438|ref|YP_664666.1| GTP-binding protein Era [Helicobacter acinonychis str. Sheeba] gi|123066224|sp|Q17XF9|ERA_HELAH RecName: Full=GTPase Era gi|109714659|emb|CAJ99667.1| GTP-binding protein [Helicobacter acinonychis str. Sheeba] Length = 301 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 160/293 (54%), Gaps = 17/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLNLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L E + A++ + + +SA K + +L + L + Sbjct: 119 LALSKIDTATHKQVLQKLQEYQQYASQFLSL---IPLSAKKSQNLNALLECISEHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W++ D +SD M EI RE LF L EIPY S V+ +K+ E++ + +I V Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFCFLSDEIPYESDVIIDKFIEEECIDKVYAHII-V 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 E+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 EKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|325282722|ref|YP_004255263.1| GTP-binding protein Era-like-protein [Deinococcus proteolyticus MRP] gi|324314531|gb|ADY25646.1| GTP-binding protein Era-like-protein [Deinococcus proteolyticus MRP] Length = 306 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 140/290 (48%), Gaps = 3/290 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R+G VA+VG N GKSTL+N F+ KV+ +H+ QTTR VRGI S+ Q+VF+DTP Sbjct: 11 DTRAGFVAIVGKPNVGKSTLLNAFLNTKVAPTSHRPQTTRRGVRGIFSDGTHQVVFVDTP 70 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ KD+ K M + + D + VVD + ++I L L+ N Sbjct: 71 GVHKPKDALGKYMNNEVSTALSDIDAMIWVVDLRHPPTDEDRLVARQIRDLPKPLFLVGN 130 Query: 139 KIDCVK-PERL--LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 K D K PE L +A + + T + + + + LP P+ + Sbjct: 131 KQDAAKYPEEAIGLYEALLEGREADTTVTSLSAQKNDAKVTALRAQILDVLPENPFFFPQ 190 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 SD + AEI RE+ + L E+PY+ +W E+ DG I I VE+ + Sbjct: 191 GSASDQSREQWAAEIVREQAMMKLRDELPYAVATRVNRWTERDDGLQRIEAEIVVEKAAH 250 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K +++G G+ ++ I A+K++ +L V L L V V W DP+ Sbjct: 251 KGMVIGAGGKQLREIGTAARKQLETLLNAKVFLGLEVVVIPGWREDPEAL 300 >gi|40063417|gb|AAR38228.1| GTP-binding protein Era [uncultured marine bacterium 580] Length = 297 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 163/290 (56%), Gaps = 9/290 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G +A+VG N GKSTL+N FVG+K+SI + K QTTR + GI ++K++Q +F+DTPG Sbjct: 8 TRCGTIAIVGQPNVGKSTLLNYFVGSKLSITSRKAQTTRYQLVGIFTDKDTQYIFVDTPG 67 Query: 80 IFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 + K + +K + + +K D++ + + + EL +L+ I S+ ++LI+ Sbjct: 68 -YQLKHLNQMNKSLNKSVNQALKDVDLILFLSEPN-ELDATDKKILQMIP-NSTPILLII 124 Query: 138 NKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID +K + ++L A+ L E+ S K + ++L + LP P++Y D Sbjct: 125 NKIDLIKDKSKILALMSEADHLDKFEEIVPTSVKKKNNLLELLESVKKYLPQQPFIYDQD 184 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQ 255 +++D EI REKLF +E+PYS V EK+E+ +G++ I VI V+ S Sbjct: 185 ELTDKGERFLAGEIVREKLFRLTGQEVPYSVAVEIEKFEQ--EGNLRRIFAVIIVDHESL 242 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K +++G G+ +K IS A+ ++ ++ V L +VKV+ W D + Sbjct: 243 KPMIIGNKGERLKEISKSARLDMEKLFGGKVWLETWVKVKTGWADDVRAL 292 >gi|297379709|gb|ADI34596.1| GTP-binding protein Era [Helicobacter pylori v225d] Length = 301 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 160/293 (54%), Gaps = 17/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L ++KID +++L E + A++ + + +SA K + +L + L + Sbjct: 119 LAVSKIDTATHKQVLQKLQEYQQFASQFLAL---VPLSAKKSQNLNALLKCISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W++ D +SD M EI RE LF L EIPY S V+ +K+ E+K + +I V Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEKRIDKVYAHII-V 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 E+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 EKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|260578248|ref|ZP_05846164.1| GTP-binding protein Era [Corynebacterium jeikeium ATCC 43734] gi|258603550|gb|EEW16811.1| GTP-binding protein Era [Corynebacterium jeikeium ATCC 43734] Length = 336 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/288 (31%), Positives = 158/288 (54%), Gaps = 6/288 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RGIV +++QI+ +DTPG+ Sbjct: 43 RSGFVSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGIVHREDAQIILVDTPGL 102 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D++ + V + ++ I D ++ +A ++ LI ++ Sbjct: 103 HRPRTLLGERLNEVVKETYSDVDVIAMCVPADEKIGPGDRWIVDAVRSVAPKTP-LIGVV 161 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V +++ Q ++L+ VS+TK D +L+ L LP P Y D Sbjct: 162 TKLDKVSKDQVGAQLLALHELLDGADVVPVSSTKQVQLDVLLDVLRDQLPEGPKFYPDDH 221 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--WEEKKDGSILIRQVIYVERPSQ 255 ++D AE+ RE LH+E+P+S V E+ +++G + + VI+VER Q Sbjct: 222 VTDDDRDTRMAELIREAALEGLHEELPHSVAVQIEEVVPNPQREGVLDVHAVIFVEREGQ 281 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I+ GK+G+ + I ++ EI ++L+Q ++L + +KV K+W DPK Sbjct: 282 KAILRGKDGRRLSRIVHRSRLEIVKMLDQNIYLDVHIKVAKNWQSDPK 329 >gi|83719946|ref|YP_442266.1| GTP-binding protein Era [Burkholderia thailandensis E264] gi|167619237|ref|ZP_02387868.1| GTP-binding protein Era [Burkholderia thailandensis Bt4] gi|83653771|gb|ABC37834.1| GTP-binding protein Era [Burkholderia thailandensis E264] Length = 299 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 153/285 (53%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I + L L+ N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGTPTL-LVAN 126 Query: 139 KIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L + +L + +SA ++N + LP +Y D Sbjct: 127 KLDRVSDKDTLYPFFQKMGELREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDD 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S VV +K+EE +G + + I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVVIDKFEE--EGRLTRVFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA++++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGAKLKQISTEARQDMEKLFDGPVYLETFVKVRSGWADN 289 >gi|238759683|ref|ZP_04620843.1| GTP-binding protein era [Yersinia aldovae ATCC 35236] gi|238702111|gb|EEP94668.1| GTP-binding protein era [Yersinia aldovae ATCC 35236] Length = 284 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 151/279 (54%), Gaps = 13/279 (4%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMI 92 GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ + K + ++LM Sbjct: 2 GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIDEKRAINRLMN 61 Query: 93 RLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE- 146 R + S+I ++V VV+ + E+ VN ++ ++L +NK+D V + Sbjct: 62 RAASSSIGDVELVIFVVEGTNWTADDEMVVN------KLRSLECPVLLAINKVDNVTDKT 115 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHF 206 +LL + ++ + +SA KG D + + + +P A + D I+D Sbjct: 116 KLLPHIQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEAGHHFPEDYITDRSQRFM 175 Query: 207 TAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQN 266 +EI REKL L +E+PYS V E++ + G I +I VER QKK+++G G Sbjct: 176 ASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNIHGLILVEREGQKKMVIGNKGSK 235 Query: 267 IKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IKTI +EA+ ++ ++ E VHL L+VKV+ W D + Sbjct: 236 IKTIGIEARHDMEQMFEAKVHLELWVKVKSGWADDERAL 274 >gi|88812350|ref|ZP_01127600.1| GTP-binding protein Era [Nitrococcus mobilis Nb-231] gi|88790357|gb|EAR21474.1| GTP-binding protein Era [Nitrococcus mobilis Nb-231] Length = 310 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 162/287 (56%), Gaps = 6/287 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G ALVG N GKSTL+N +G KV+IV+ K QTTR + GI + +QIV++DTPG+ Sbjct: 18 RCGFAALVGRPNVGKSTLLNTLLGRKVTIVSRKPQTTRHRILGIHTLTGAQIVYVDTPGL 77 Query: 81 FNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++ + ++ + R + + + AD+ +VD+ R + + +L+ + ++ +IL LNK Sbjct: 78 HRQENTAMNRCLNRTATTVLAEADVAVFLVDALRWTQED-EFVLERLTPFANPVILALNK 136 Query: 140 IDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID ++ ++ LL + + VSA++G + + LP + + +QI Sbjct: 137 IDRLRAKQALLPLIDRLSGRRDFAAVVPVSASRGINLAALEAEIVQQLPNSVAYFPQEQI 196 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQKK 257 +D AE+ RE+L L +E+PY+S V E +E+ +G + I VI++ER QK Sbjct: 197 TDRSERFMAAELIRERLLKTLGQELPYASTVAIEAFEQ--EGRLRRIAAVIWIERRGQKP 254 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I++G GQ +K I +A++E+ + V+L L+VKV++ W D + Sbjct: 255 IVIGHKGQRLKQIGRQAREEMEALFGAVVYLQLWVKVREGWSDDERA 301 >gi|317013934|gb|ADU81370.1| GTPase Era [Helicobacter pylori Gambia94/24] Length = 301 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/292 (34%), Positives = 160/292 (54%), Gaps = 15/292 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L L+KID +++L++ + K F++ +SA K + +L + L + W+ Sbjct: 119 LALSKIDTATRKQVLQKLQEYQKYSSQFLD-LVPLSAKKSQNLNALLECISKHLSPSAWL 177 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVIYVE 251 + D +SD M EI RE LF L EIPY S V+ +K+ E ++ + R I VE Sbjct: 178 FEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEAERIDKVYAR--IIVE 235 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 + SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 236 KESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|317012333|gb|ADU82941.1| GTP-binding protein Era [Helicobacter pylori Lithuania75] Length = 301 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 160/291 (54%), Gaps = 13/291 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L L+KID +++L++ + + F++ +SA K + +L + L + W+ Sbjct: 119 LALSKIDTATHKQVLQKLQEYQQYASQFLD-LVPLSAKKSQNLNALLECISKYLNPSAWL 177 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 + D +SD M EI RE LF L EIPY S V+ +K+ E++ + +I VE+ Sbjct: 178 FEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAHII-VEK 236 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQKKI++GKNG NIK I A+ +I E+ E+ V L L V QK W + K Sbjct: 237 ESQKKIVIGKNGVNIKRIGTSARLKIQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|75910714|ref|YP_325010.1| GTP-binding protein Era [Anabaena variabilis ATCC 29413] gi|75704439|gb|ABA24115.1| Small GTP-binding protein [Anabaena variabilis ATCC 29413] Length = 337 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 155/299 (51%), Gaps = 9/299 (3%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 GE++ +F +SG + ++G N GKSTL+N+ VG K++I + QTTR+ +RG Sbjct: 32 GEVSIPQAPPEF-----KSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRG 86 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 IV+ E+Q++F+DTPGI +++++ + I+ D+V VVD + Sbjct: 87 IVTTPEAQLIFVDTPGIHKPHHQLGEVLVKNAKLAIESVDVVLFVVDGTVACGAGDRFIA 146 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNY 181 + + +IL +NK+D +P + +L + T SA G + Sbjct: 147 DLLIHSKTPVILGINKVDQ-QPSDSQNIDDSYQQLASAYQWPTVKFSAKTGAELPQLQEL 205 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS 241 L L P+ Y D ++D P E+ RE++ L +E+P+S + + EE + Sbjct: 206 LVEHLEHGPYYYPPDLVTDQPERFIMGELIREQILLLTREEVPHSVAIAIDLVEETPTIT 265 Query: 242 ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 ++ I+VER SQK I++GK G +K+I A+++I +++ V+L LFVKVQ W H Sbjct: 266 RVL-ATIHVERDSQKGILIGKGGSMLKSIGSAAREQIQKLIAGKVYLELFVKVQPKWRH 323 >gi|322411296|gb|EFY02204.1| GTP-binding protein Era [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 261 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 139/250 (55%), Gaps = 3/250 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LL Q + + ++ +S +G+ ++ L L + DQI+D Sbjct: 123 DKVHPDQLLAQIDDFRSQMEFKEVVPISGLEGNNVPTLIKLLTDNLEEGFQYFPEDQITD 182 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 183 HPERFLVSEMIREKVLHLTQQEVPHSVAVVVESMKRDEETD-KVHIRATIMVERDSQKGI 241 Query: 259 MLGKNGQNIK 268 ++GK G +K Sbjct: 242 IIGKQGAMLK 251 >gi|317181837|dbj|BAJ59621.1| GTP-binding protein Era [Helicobacter pylori F57] Length = 301 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 159/293 (54%), Gaps = 17/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 ++ G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKVGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLYQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L E + A++ + + +SA K + +L + L + Sbjct: 119 LALSKIDTATHKQVLQKLQEYQQYASQFLAL---VPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W++ D +SD M EI RE LF L EIPY S VV +K+ E++ + +I V Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVVIDKFIEEERIDKVYAHII-V 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 E+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 EKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|86158078|ref|YP_464863.1| small GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-C] gi|85774589|gb|ABC81426.1| small GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-C] Length = 310 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 155/290 (53%), Gaps = 13/290 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL+NR +G V+IV+ + QTTR+ + G+ + +Q+ F DTPG+ Sbjct: 10 RAGFVAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQVAFFDTPGL 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHD----LLKEIAKRSSRLI 134 AK + ++ M+ + ST+ D V +++++ E +V + + ++E+ + I Sbjct: 70 HKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPEGRVEVGESTRWAIEEVRRARKPAI 129 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP--LAPWV 192 L +NK+D LL + L SA G D ++ L LP AP + Sbjct: 130 LGVNKMDRAPRATLLPVIDAYRGLHDWADIVPFSALTGENVDTLVQALVRLLPESEAP-L 188 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE----KKDGSILIRQVI 248 + D ++D AE RE++ L +EIPYS+ V E+++E ++ G + I ++ Sbjct: 189 FPPDVLTDQAERALAAEYVREQVMLQTRQEIPYSAAVEVEEFDESDRRERGGLVRISALV 248 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VER SQK I++GK G +K I A++ + +L V L L VKV + W Sbjct: 249 VVERDSQKAIVIGKQGAMLKKIGTRAREGLERLLGCKVFLSLTVKVDERW 298 >gi|212212137|ref|YP_002303073.1| GTP-binding protein Era [Coxiella burnetii CbuG_Q212] gi|226741203|sp|B6IZ00|ERA_COXB2 RecName: Full=GTPase Era gi|212010547|gb|ACJ17928.1| GTP-binding protein era [Coxiella burnetii CbuG_Q212] Length = 295 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 159/286 (55%), Gaps = 7/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G A++G N GKSTL+N+ +G K+SI + K QTTR + G+ + K+ Q++++DTPG+ Sbjct: 7 GYAAIIGRPNVGKSTLLNQLLGQKISITSRKPQTTRYQILGVKTFKDIQVIYVDTPGLHA 66 Query: 83 AKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELK-VNIHDLLKEIAKRSSRLILILNKI 140 + + + ++ M R + ++ D + V++ H E + + D LKEI + + L++NK+ Sbjct: 67 STERTINRYMNRTARGALRDVDAIVFVIEPHWESQDAWVLDNLKEI---ETPVFLVINKV 123 Query: 141 DCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K LL E + L +K +SA G + + +P +P+ + +Q++ Sbjct: 124 DKIKNRAELLPLIEKVSSLYAFQKITPLSAKTGDQVGTLEQAVHQLMPESPFYFPPEQVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL L +EIPYS V ++ K++ I I VI+VE+ SQK I+ Sbjct: 184 DRSDQFMASEIIREKLMRLLGQEIPYSLAVTLIEF-RKEEKIIRISAVIWVEKKSQKGIV 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +GK G+ +K + A+ ++ + + V L L+VKV+ W + + Sbjct: 243 IGKGGERLKRVGTNARLDMEKWFGKRVFLQLWVKVKSGWADNERLL 288 >gi|317179116|dbj|BAJ56904.1| GTP-binding protein Era [Helicobacter pylori F30] Length = 301 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 162/293 (55%), Gaps = 17/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQ----AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L ++KID +++L++ + A++ + + +SA K + +L + L + Sbjct: 119 LAVSKIDTATHKQVLQKLQGYQQYASQFLAL---VPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W++ D +SD M + EI RE LF L EIPY S VV +K+ E++ + +I V Sbjct: 176 WLFEKDLMSDEKMRNIYKEIIRESLFDFLSDEIPYESDVVIDKFIEEERIDKVYAHII-V 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 E+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 EKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|315925210|ref|ZP_07921424.1| GTP-binding protein Era [Pseudoramibacter alactolyticus ATCC 23263] gi|315621444|gb|EFV01411.1| GTP-binding protein Era [Pseudoramibacter alactolyticus ATCC 23263] Length = 307 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 147/282 (52%), Gaps = 4/282 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +AL+G N GKSTL+N +G K+ I + + QTTR+ +R I ++ + Q+VF+DTPG+ Sbjct: 12 KSGFIALIGRPNVGKSTLLNAILGEKMVITSARPQTTRNSIRCIHTDADCQMVFVDTPGV 71 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M + T+ D V +V+ ++ + + K +A+ + ++L++NKI Sbjct: 72 HKPKTKLGEYMKKTIRDTLADVDAVLYLVEPTKKERPEDAYIRKLLARVQAPVVLVINKI 131 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V LL+ + VSA +G G +V+ L + LP P + D I D Sbjct: 132 DTVGKPALLDVMARYRGEDRLRTIVPVSAKRGEGIGEVMAALMAVLPEGPQYFPGDMIID 191 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK----KDGSILIRQVIYVERPSQK 256 AE+ REK L EIP+ V K + + + I ++ E+ S K Sbjct: 192 QSERFVVAEMIREKALHCLRDEIPHGIAVEVTKMHPRLARHQKTIVDIEATVFCEKKSHK 251 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++G+ G +K I +A+++I L Q V+L L++K++ DW Sbjct: 252 GIIIGRGGAMLKAIGSDARRDIESFLGQSVNLQLWIKIRPDW 293 >gi|15676585|ref|NP_273729.1| GTP-binding protein Era [Neisseria meningitidis MC58] gi|7225915|gb|AAF41105.1| GTP-binding protein Era [Neisseria meningitidis MC58] gi|316983659|gb|EFV62640.1| GTP-binding protein Era [Neisseria meningitidis H44/76] gi|325139864|gb|EGC62395.1| GTP-binding protein Era [Neisseria meningitidis CU385] Length = 324 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 158/286 (55%), Gaps = 9/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 34 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 93 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILN 138 D + L RL+ + + V +VV ++ D +LK++ K + +IL++N Sbjct: 94 --QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTP-VILVVN 150 Query: 139 KIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 KID K +R +A +A VSA G ++L + LP + +Y Sbjct: 151 KIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPE 210 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V++ SQ Sbjct: 211 DMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVDKESQ 269 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 270 KAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 315 >gi|13959357|sp|Q9K0C7|ERA_NEIMB RecName: Full=GTPase Era gi|325200627|gb|ADY96082.1| GTP-binding protein Era [Neisseria meningitidis H44/76] Length = 307 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 158/286 (55%), Gaps = 9/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 17 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILN 138 D + L RL+ + + V +VV ++ D +LK++ K + +IL++N Sbjct: 77 --QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTP-VILVVN 133 Query: 139 KIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 KID K +R +A +A VSA G ++L + LP + +Y Sbjct: 134 KIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPE 193 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V++ SQ Sbjct: 194 DMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVDKESQ 252 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 253 KAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 298 >gi|326562235|gb|EGE12563.1| GTP-binding protein Era [Moraxella catarrhalis 7169] gi|326565583|gb|EGE15746.1| GTP-binding protein Era [Moraxella catarrhalis 12P80B1] gi|326567189|gb|EGE17311.1| GTP-binding protein Era [Moraxella catarrhalis BC1] gi|326576293|gb|EGE26208.1| GTP-binding protein Era [Moraxella catarrhalis CO72] Length = 331 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 171/315 (54%), Gaps = 17/315 (5%) Query: 6 ITFFNEHKDFVQDNS-RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 I+ F E++ ++ S R+G VA+VG N GKSTL+N +G K+SI + K QTTR + GI Sbjct: 14 ISAFFENRSTPKNESFRAGFVAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGI 73 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-- 122 +++++ QIVF+DTPGI + + + R++ + I V +V+ ++ DL Sbjct: 74 LTDEDRQIVFVDTPGIHSKE--VRAINERMNKAAISALADVDVVLFVVDGIQWREDDLLT 131 Query: 123 LKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 L++++ + +IL++NK D VK + +LL E ++ VSA + H D + + Sbjct: 132 LEKLSATNLPVILVINKADTVKDKSKLLPVIESFSESFDFADIIPVSALRRHNLDRLQSV 191 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK---- 237 + LP+ P ++ A+QI+D +EI REK+ E+PY V + ++++ Sbjct: 192 IGEYLPIRPAIFDAEQITDRSERFLASEIIREKIMRISGDEVPYDLTVQIDTFKDEPAHK 251 Query: 238 -------KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLIL 290 + I I+VER QK I++G G IK + ++A+K++ + ++ + L L Sbjct: 252 DPETGKWRKAVTFIDATIFVERAGQKSIIIGDKGAKIKQVGIDARKDMEVLFDRKIMLTL 311 Query: 291 FVKVQKDWGHDPKCC 305 +VKV++ W D + Sbjct: 312 WVKVKRGWSDDERAL 326 >gi|170732445|ref|YP_001764392.1| GTP-binding protein Era [Burkholderia cenocepacia MC0-3] gi|169815687|gb|ACA90270.1| GTP-binding protein Era [Burkholderia cenocepacia MC0-3] Length = 287 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 154/282 (54%), Gaps = 9/282 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG F Sbjct: 1 MIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S ++ + R ST+ D++ V+++ R + +L I L LI NKID Sbjct: 60 RHSTALNRSLNRAVTSTLTSVDVILFVIEAGR-FGPDDQKVLDLIPPGMPTL-LIANKID 117 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 V + L + ++L + +SA K +L+ + LP +Y D+++D Sbjct: 118 RVNDKATLFPFMQKVSELREFTELVPLSAQKPEDIKRLLDTIKPYLPEGEPIYGEDELTD 177 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQKKIM 259 AEI REK+F E+PY+S V+ +K+EE +G + I I VER S K ++ Sbjct: 178 RSSRFLAAEILREKVFRWTGDELPYTSTVLIDKFEE--EGRLKRIFATILVERDSHKAMV 235 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +GK G+ +K IS EA+ ++ ++ + PV+L FVKV+ W + Sbjct: 236 IGKKGEKLKQISTEARMDMEKLFDGPVYLETFVKVKSGWADN 277 >gi|269976802|ref|ZP_06183777.1| GTP-binding protein Era [Mobiluncus mulieris 28-1] gi|307700621|ref|ZP_07637649.1| GTP-binding protein Era [Mobiluncus mulieris FB024-16] gi|269934999|gb|EEZ91558.1| GTP-binding protein Era [Mobiluncus mulieris 28-1] gi|307614151|gb|EFN93392.1| GTP-binding protein Era [Mobiluncus mulieris FB024-16] Length = 303 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 152/290 (52%), Gaps = 5/290 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 ++ R+G VA++G N GKSTL+N VG K++I + + +TTR + RGIV Q+V +DT Sbjct: 12 EDFRAGFVAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVDT 71 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL--IL 135 PGI + + + D++ V + +E+ ++ E R++R+ + Sbjct: 72 PGIHRPRTLLGQRLNDRVEEAQADVDLLVFCVPADQEIGPGDRRIV-EKQLRANRIPALA 130 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++ K D P ++ Q N+L + VSA +G + +++ L +PL+ +Y A Sbjct: 131 VVTKTDVATPNQIAAQLLALNELYDFREIVPVSAVQGKQVELLIDLLGGLMPLSAPLYPA 190 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 Q SD AE+ RE L +E+P+S V E+ K I++ ++VER SQ Sbjct: 191 GQDSDEDDEVMIAELIREAALEGLGQELPHSLAVQVEEIIRDKTWRIVVN--LFVERDSQ 248 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++G+ G +K I + A+ +I +L + V+L L V+ KDW DPK Sbjct: 249 KSIIIGRKGGRLKEIGMRARPQIEALLNRHVYLDLHVRTAKDWQKDPKML 298 >gi|167581152|ref|ZP_02374026.1| GTP-binding protein Era [Burkholderia thailandensis TXDOH] Length = 299 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 152/285 (53%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I + L L+ N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGTPTL-LVAN 126 Query: 139 KIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L +L + +SA ++N + LP +Y D Sbjct: 127 KLDRVSDKDTLYPFFRKMGELREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDD 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S VV +K+EE +G + + I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVVIDKFEE--EGRLTRVFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA++++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGAKLKQISTEARQDMEKLFDGPVYLETFVKVRSGWADN 289 >gi|220917393|ref|YP_002492697.1| GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-1] gi|219955247|gb|ACL65631.1| GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-1] Length = 310 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 155/290 (53%), Gaps = 13/290 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VA+VG N GKSTL+NR +G V+IV+ + QTTR+ + G+ + +Q+ F DTPG+ Sbjct: 10 RAGFVAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQVAFFDTPGL 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHD----LLKEIAKRSSRLI 134 AK + ++ M+ + ST+ D V +++++ E +V + + + E+ + + Sbjct: 70 HKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPEGRVEVGESTRWAIDEVRRARKPAV 129 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP--LAPWV 192 L +NK+D LL + L SA G D ++ L LP AP + Sbjct: 130 LGVNKMDRAPRATLLPVIDAYRGLHDWADIVPFSALTGENVDTLVQALIRRLPESEAP-L 188 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE----KKDGSILIRQVI 248 + AD ++D AE RE++ L +EIPY++ V E+++E ++ G + I ++ Sbjct: 189 FPADVLTDQAERALAAEYVREQVMLQTRQEIPYAAAVEVEEFDESGRRERGGLVRISALV 248 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VER SQK I++GK G +K I A++ + +L V L L VKV + W Sbjct: 249 VVERDSQKAIVIGKQGAMLKKIGTRAREGLERLLGCKVFLSLTVKVDERW 298 >gi|78046933|ref|YP_363108.1| GTP-binding protein Era [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585559|sp|Q3BVV5|ERA_XANC5 RecName: Full=GTPase Era gi|78035363|emb|CAJ23008.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 300 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 163/287 (56%), Gaps = 12/287 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ Sbjct: 9 RSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGL 68 Query: 81 FN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL--KEIAKRSSRLILIL 137 K + +++M R + +++ D LV+++ R + D L + ++ ++L++ Sbjct: 69 HREQKRAMNRVMNRAARGSLEGVDAAVLVIEAGR---WDEEDTLAFRVLSDAGVPVVLVV 125 Query: 138 NKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK+D +K + L A+++ F VSA K G D ++ L +P A ++ Sbjct: 126 NKVDRLKDKTALFPFLAQVSEGRTFA-AVHPVSALKRKGLDALVGDLLKLVPEAEAMFGE 184 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 D+I+D E+ RE+L L +E+PY++ V E++ E DG++L I VI+VER Sbjct: 185 DEITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFAE--DGALLRIGAVIWVEREG 242 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G +K I +A+ ++ + V L +V+V++ W D Sbjct: 243 QKAIVIGKGGTRLKEIGGKARLQMERLFGAKVFLETWVRVREGWSDD 289 >gi|21242079|ref|NP_641661.1| GTP-binding protein Era [Xanthomonas axonopodis pv. citri str. 306] gi|294626962|ref|ZP_06705553.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664536|ref|ZP_06729881.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|25008431|sp|Q8PMU9|ERA_XANAC RecName: Full=GTPase Era gi|21107486|gb|AAM36197.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306] gi|292598822|gb|EFF42968.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605698|gb|EFF49004.1| GTP-binding protein Era [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 299 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 157/289 (54%), Gaps = 16/289 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ Sbjct: 9 RSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGL 68 Query: 81 FN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 K + +++M R + +++ D LV+++ R D +A R + Sbjct: 69 HREQKRAMNRVMNRAARGSLEGVDAAVLVIEAGR------WDEEDTLAFRVLSDAGVPVV 122 Query: 140 IDCVKPERLLEQAEIANKLVFIE--KTFM----VSATKGHGCDDVLNYLCSTLPLAPWVY 193 + K +RL ++ + L + +TF VSA K G D ++ L +P A ++ Sbjct: 123 LVVNKVDRLKDKTALFPFLAQVSEGRTFAAVHPVSALKRKGLDALVGDLLKLVPEAEAMF 182 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 D+I+D E+ RE+L L +E+PY++ V E++ E DG++L I VI+VER Sbjct: 183 GEDEITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFAE--DGALLRIGAVIWVER 240 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G +K I +A+ ++ + V L +V+V++ W D Sbjct: 241 EGQKAIVIGKGGTRLKEIGGKARLQMERLFGAKVFLETWVRVREGWSDD 289 >gi|326572024|gb|EGE22026.1| GTP-binding protein Era [Moraxella catarrhalis BC8] Length = 331 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 170/315 (53%), Gaps = 17/315 (5%) Query: 6 ITFFNEHKDFVQDNS-RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 I+ F E++ ++ S R+G VA+VG N GKSTL+N +G K+SI + K QTTR + GI Sbjct: 14 ISAFFENRSTPKNESFRAGFVAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGI 73 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-- 122 +++++ QIVF+DTPGI + + R++ + I V +V+ ++ DL Sbjct: 74 LTDEDRQIVFVDTPGIHGKE--VRAINERMNKAAISALADVDVVLFVVDGIQWREDDLLT 131 Query: 123 LKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 L++++ + +IL++NK D VK + +LL E ++ VSA + H D + + Sbjct: 132 LEKLSATNLPVILVINKADTVKDKSKLLPVIESFSESFDFADIIPVSALRRHNLDRLQSV 191 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK---- 237 + LP+ P ++ A+QI+D +EI REK+ E+PY V + ++++ Sbjct: 192 IGEYLPIRPAIFDAEQITDRSERFLASEIIREKIMRISGDEVPYDLTVQIDTFKDEPAHK 251 Query: 238 -------KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLIL 290 + I I+VER QK I++G G IK + ++A+K++ + ++ + L L Sbjct: 252 DPETGKWRKAVTFIDATIFVERAGQKSIIIGDKGAKIKQVGIDARKDMEVLFDRKIMLTL 311 Query: 291 FVKVQKDWGHDPKCC 305 +VKV++ W D + Sbjct: 312 WVKVKRGWSDDERAL 326 >gi|261839651|gb|ACX99416.1| GTP-binding protein Era [Helicobacter pylori 52] Length = 301 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 160/295 (54%), Gaps = 21/295 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 L L+KID +++L++ + + + F+ +SA K + +L + L + Sbjct: 119 LALSKIDTATHKQVLQKLQEYQQY---DSQFLALVPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVI 248 W++ D +SD M EI RE LF L EIPY S V+ +K+ EE+ D + I Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDK---VYAHI 232 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 233 IVEKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|134095252|ref|YP_001100327.1| GTP-binding protein Era [Herminiimonas arsenicoxydans] gi|133739155|emb|CAL62204.1| GTP-binding protein Era [Herminiimonas arsenicoxydans] Length = 300 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 162/288 (56%), Gaps = 15/288 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N +GAKVSI + K QTTR + GI + ++Q V++DTPG Sbjct: 11 RCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVDDAQFVYVDTPG- 69 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + ++ +K + R +T+ +D++ V+++ + + L ++ ++ IL++N Sbjct: 70 FQTRHSNALNKTLNRTVTTTLTASDVILFVIEAGTFGQADQQVL--DLIPKNVPCILVIN 127 Query: 139 KIDCVKPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K D VK + +L +IA K F VSA +++ + LP P V+ D Sbjct: 128 KSDRVKDKAVLLPFAQQIAAKRDFT-AVVPVSAKLRFQLENLQGEIKKHLPENPPVFGED 186 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IYVERP 253 I+D AEI REKLF + E+PY+S V+ EK+E + + +R+V I VER Sbjct: 187 DITDRSEKFLAAEIVREKLFRFVGDELPYTSTVLIEKFELEGN----LRRVFAAILVERD 242 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + K +++G G+ +K IS +A+ ++ + PV+L ++VKV+ W + Sbjct: 243 THKSMVIGNKGERLKDISTQARLDMERLFGGPVYLEIWVKVKSGWADN 290 >gi|325523761|gb|EGD02015.1| GTPase Era [Burkholderia sp. TJI49] Length = 299 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 153/285 (53%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + +++Q +F+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQFIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I + L LI N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGTPTL-LIAN 126 Query: 139 KIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L + + L + +SA + +L + LP +Y D Sbjct: 127 KLDRVGDKDTLFPFMQQMSTLREFAEIVPLSAKQPEDIKRLLETIKPYLPEGEPIYGEDD 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S VV +K+EE +G + I I VER + K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVVIDKFEE--EGRLKRIFATILVERDTHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA+ ++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGAKLKQISTEARMDMEKLFDGPVYLETFVKVKSGWADN 289 >gi|320333363|ref|YP_004170074.1| GTP-binding protein Era-like-protein [Deinococcus maricopensis DSM 21211] gi|319754652|gb|ADV66409.1| GTP-binding protein Era-like-protein [Deinococcus maricopensis DSM 21211] Length = 302 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 143/290 (49%), Gaps = 3/290 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+R+G VA+VG N GKSTL+N +G K++ + + QTTR +RGI + QI+F+DTP Sbjct: 7 NTRAGFVAIVGKPNVGKSTLLNSLLGVKIAPTSPRPQTTRKHIRGIYNTDTEQIIFVDTP 66 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G+ KD+ K M + + D + VVD + +++ + L+L+ N Sbjct: 67 GLHKPKDALGKYMNNEVHTALADVDAIIWVVDLRHPPTDEDQLVARQVRELRQPLLLVGN 126 Query: 139 KIDCVK-PERL--LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 K+D K P+ L +A I ++ + + + DV + LP P+ + Sbjct: 127 KVDAAKYPDEAFKLYRALIESRTGDTTEFTLSAQNDPVAVMDVRTSILGLLPENPFFFPV 186 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 SD + AEI RE+ L E+PY+ W E+ DG I I VE+P+ Sbjct: 187 GAASDQSREQWAAEIVREEAMKKLRDELPYAVATRVNSWTERDDGLQRIEAEIVVEKPAH 246 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K +++G G+ +K I A+K++ L + V+L L V V +W D + Sbjct: 247 KGMVIGAGGKQLKEIGQAARKQLEVFLSRKVYLGLQVIVIPNWREDTEAL 296 >gi|325203774|gb|ADY99227.1| GTP-binding protein Era [Neisseria meningitidis M01-240355] Length = 307 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 158/286 (55%), Gaps = 9/286 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG Sbjct: 17 RCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILN 138 D + L RL+ + + V +VV ++ D +LK++ K + ++L++N Sbjct: 77 --QTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTP-VVLVVN 133 Query: 139 KIDCVKP-ERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 KID K +R +A +A VSA G ++L + LP + +Y Sbjct: 134 KIDKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPE 193 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D EI REKLF +L +E+PY+ V E++EE +DG I + V++ SQ Sbjct: 194 DMVTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEE-EDGLNRIYIAVLVDKESQ 252 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 253 KAILIGKGGERLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADD 298 >gi|294788553|ref|ZP_06753795.1| GTP-binding protein Era [Simonsiella muelleri ATCC 29453] gi|294483430|gb|EFG31115.1| GTP-binding protein Era [Simonsiella muelleri ATCC 29453] Length = 308 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 161/292 (55%), Gaps = 17/292 (5%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R G +A+VG N GKSTL+N +G K+SI + K QTTR V GI ++ +Q VF+DTP Sbjct: 16 NYRCGFIAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKVTGIYTDNTAQFVFVDTP 75 Query: 79 GIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 G D + L RL+ + + D + V+++ R + +LK++ K + ++L Sbjct: 76 GF--QTDHRNALNDRLNLNVTEAMNGVDAIAFVLEAMRFTDAD-RTVLKQLPKNTP-VVL 131 Query: 136 ILNKI------DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ++NKI D + +EQ + V +E +VSA G ++L L LP + Sbjct: 132 VVNKIDKDKAKDKLALNAFIEQVRAEFEFVAVE---VVSAKHGLRIANLLETLKPFLPES 188 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 +Y D ++D EI REKLF +L +E+PY+ V E+++E ++G I + Sbjct: 189 VPMYPEDMVTDKSSRFLAMEIVREKLFRYLGEELPYAMNVEVEQFKE-ENGMFHIYIAVL 247 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 V++ +QK I++G+ G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 248 VDKENQKPIVIGRGGEKLKKISTEARLDMEKLFDCKVFLKVWVKVKSGWADD 299 >gi|284006740|emb|CBA71997.1| GTP-binding protein [Arsenophonus nasoniae] Length = 284 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 146/274 (53%), Gaps = 3/274 (1%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMI 92 GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++DTPG+ K + ++LM Sbjct: 2 GKSTLLNQLLGQKVSITSRKPQTTRHRIMGIETENNYQTIYVDTPGLHVEEKRAINRLMN 61 Query: 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID-CVKPERLLEQ 151 R + S+I +++ VV+ + ++ ++ ++L++NKID V LL Sbjct: 62 RAASSSIGDVELIIFVVEG-THWTTDDEMVINKLRHLPCPVLLVINKIDNVVNKTHLLPH 120 Query: 152 AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEIT 211 E +K + +SA KG G D + + +P A + AD I+D +EI Sbjct: 121 IEFLSKQMNFLDIVPISAEKGTGIDIITKIVRQHMPEAAHHFPADYITDRSQRFMASEII 180 Query: 212 REKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTIS 271 REKL L E+PYS V E++ + G I +I V+R QKK+++G G IK I Sbjct: 181 REKLMRFLGDELPYSVTVEIEQFVVNERGGYNIHGLILVKRDGQKKMVIGNKGSKIKKIG 240 Query: 272 LEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +EA+ ++ ++ VHL L+VKV+ W D + Sbjct: 241 IEARMDMEKLFSTKVHLELWVKVKAGWADDERAL 274 >gi|238796736|ref|ZP_04640242.1| GTP-binding protein era [Yersinia mollaretii ATCC 43969] gi|238719467|gb|EEQ11277.1| GTP-binding protein era [Yersinia mollaretii ATCC 43969] Length = 284 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 151/279 (54%), Gaps = 13/279 (4%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMI 92 GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ K + ++LM Sbjct: 2 GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61 Query: 93 RLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE- 146 R + S++ ++V VV+ + E+ VN ++ ++L +NK+D V + Sbjct: 62 RAASSSLGDVELVIFVVEGTNWTADDEMVVN------KLRSLDCPVLLAINKVDNVTDKS 115 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHF 206 +LL + ++ + +SA KG D + + + +P A + D I+D Sbjct: 116 KLLPHIQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKLMPEAEHHFPEDYITDRSQRFM 175 Query: 207 TAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQN 266 +EI REKL L +E+PYS V E++ + G I +I VER QKK+++G G Sbjct: 176 ASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNIHGLILVEREGQKKMVIGNKGTK 235 Query: 267 IKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IKTI +EA++++ ++ E VHL L+VKV+ W D + Sbjct: 236 IKTIGIEARQDMEKMFEAKVHLELWVKVKSGWADDERAL 274 >gi|217034385|ref|ZP_03439800.1| hypothetical protein HP9810_889g30 [Helicobacter pylori 98-10] gi|216943180|gb|EEC22650.1| hypothetical protein HP9810_889g30 [Helicobacter pylori 98-10] Length = 301 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 17/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G +AL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFIALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L ++KID +++L E + A++ + + +SA K + +L + L + Sbjct: 119 LAVSKIDTATHKQVLQKLQEYQQYASQFLAL---VPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W++ D +SD M EI RE LF L EIPY S VV +K+ E++ + +I V Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVVIDKFIEEERIDKVYAHII-V 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 E+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 EKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|284030367|ref|YP_003380298.1| GTP-binding protein Era [Kribbella flavida DSM 17836] gi|283809660|gb|ADB31499.1| GTP-binding protein Era [Kribbella flavida DSM 17836] Length = 312 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 151/294 (51%), Gaps = 11/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VG NAGKSTL N VG K+ I + K QTTR VRGIV ++Q++ +DTPG+ Sbjct: 12 RSGFACFVGRPNAGKSTLTNALVGQKIVITSSKPQTTRHAVRGIVHRPDAQLILVDTPGL 71 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILNK 139 + + + + +T D++ + + S+ + L+ E AK + + I + K Sbjct: 72 HKPRTLLGERLNDVVKTTWAEVDVIAICLPSNERIGPGDRFLVTEAAKVAKTPKIALATK 131 Query: 140 IDCVKPERLLEQ-AEIA--NKLVFIEKTFM--VSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D V P+R+ E +EIA V IE T + VSAT G + V + L LP +Y Sbjct: 132 SDLVGPDRMAEHLSEIAELGASVGIEWTAVIPVSATDGFQTELVADELVKQLPAGRPLYP 191 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS-----ILIRQVIY 249 ++D P E+ RE + E+P+S V ++ ++D + I IY Sbjct: 192 DGDVTDEPEEILVGELIREAALEGVRDELPHSIAVTIDEMGLREDRPADKPLVDIYANIY 251 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +ER SQK I++G G ++ + A+++I +L PV+L L VK+ K+W D K Sbjct: 252 LERDSQKGIIIGHKGARLREVGANARRQIEALLGTPVYLDLHVKIAKNWQTDAK 305 >gi|227874779|ref|ZP_03992932.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35243] gi|227844554|gb|EEJ54710.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35243] Length = 303 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 152/290 (52%), Gaps = 5/290 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 ++ R+G VA++G N GKSTL+N VG K++I + + +TTR + RGIV Q+V +DT Sbjct: 12 EDFRAGFVAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVSRGIVHRPGFQLVLVDT 71 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL--IL 135 PGI + + + D++ V + +E+ ++ E R++R+ + Sbjct: 72 PGIHRPRTLLGQRLNDRVEEAQADVDLLVFCVPADQEIGPGDRRIV-EKQLRANRIPALA 130 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++ K D P ++ Q N+L + VSA +G + +++ L +PL+ +Y A Sbjct: 131 VVTKTDVATPNQIAAQLLALNELYDFREIVPVSAVQGKQVELLIDLLGGLMPLSAPLYPA 190 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 Q SD AE+ RE L +E+P+S V E+ K I++ ++VER SQ Sbjct: 191 GQDSDEDDEVMIAELIREAALEGLGQELPHSLAVQVEEIIRDKTWRIVVN--LFVERDSQ 248 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 K I++G+ G +K I + A+ +I +L + V+L L V+ KDW DPK Sbjct: 249 KSIIIGRKGGRLKEIGMRARPQIEALLNRHVYLDLHVRTAKDWQKDPKML 298 >gi|121598208|ref|YP_993769.1| GTP-binding protein Era [Burkholderia mallei SAVP1] gi|134277678|ref|ZP_01764393.1| GTP-binding protein Era [Burkholderia pseudomallei 305] gi|217420968|ref|ZP_03452473.1| GTP-binding protein Era [Burkholderia pseudomallei 576] gi|226199901|ref|ZP_03795451.1| GTP-binding protein Era [Burkholderia pseudomallei Pakistan 9] gi|238562761|ref|ZP_00439922.2| GTP-binding protein Era [Burkholderia mallei GB8 horse 4] gi|242316819|ref|ZP_04815835.1| GTP-binding protein Era [Burkholderia pseudomallei 1106b] gi|251767269|ref|ZP_02266587.2| GTP-binding protein Era [Burkholderia mallei PRL-20] gi|254195962|ref|ZP_04902388.1| GTP-binding protein Era [Burkholderia pseudomallei S13] gi|254199233|ref|ZP_04905599.1| GTP-binding protein Era [Burkholderia mallei FMH] gi|254205540|ref|ZP_04911892.1| GTP-binding protein Era [Burkholderia mallei JHU] gi|254296872|ref|ZP_04964325.1| GTP-binding protein Era [Burkholderia pseudomallei 406e] gi|121227018|gb|ABM49536.1| GTP-binding protein Era [Burkholderia mallei SAVP1] gi|134251328|gb|EBA51407.1| GTP-binding protein Era [Burkholderia pseudomallei 305] gi|147748829|gb|EDK55903.1| GTP-binding protein Era [Burkholderia mallei FMH] gi|147752983|gb|EDK60048.1| GTP-binding protein Era [Burkholderia mallei JHU] gi|157807734|gb|EDO84904.1| GTP-binding protein Era [Burkholderia pseudomallei 406e] gi|169652707|gb|EDS85400.1| GTP-binding protein Era [Burkholderia pseudomallei S13] gi|217396380|gb|EEC36397.1| GTP-binding protein Era [Burkholderia pseudomallei 576] gi|225927957|gb|EEH23994.1| GTP-binding protein Era [Burkholderia pseudomallei Pakistan 9] gi|238522002|gb|EEP85449.1| GTP-binding protein Era [Burkholderia mallei GB8 horse 4] gi|242140058|gb|EES26460.1| GTP-binding protein Era [Burkholderia pseudomallei 1106b] gi|243063330|gb|EES45516.1| GTP-binding protein Era [Burkholderia mallei PRL-20] Length = 311 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 152/285 (53%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q +F+DTPG Sbjct: 22 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPG- 80 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I + L L+ N Sbjct: 81 FQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGTPTL-LVAN 138 Query: 139 KIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L + L + +SA ++N + LP +Y D Sbjct: 139 KLDRVSDKDTLYPFFQKMGGLREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDD 198 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S VV +K+EE +G + + I VER S K Sbjct: 199 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVVIDKFEE--EGRLTRVFATILVERDSHK 256 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA++++ ++ + PV+L FVKV+ W + Sbjct: 257 AMVIGKKGAKLKQISTEARQDMEKLFDGPVYLETFVKVRSGWADN 301 >gi|306836628|ref|ZP_07469594.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49726] gi|304567458|gb|EFM43057.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49726] Length = 345 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 154/294 (52%), Gaps = 10/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RG+V +++Q+V +DTPG+ Sbjct: 48 RSGFVSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHREDAQVVVVDTPGL 107 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D++ L + + ++ I D ++ IA ++ +I I+ Sbjct: 108 HRPRTLLGERLNEVVKETYADVDVIGLTIPADEKIGPGDRWILDNVRSIAPKTP-IIGIV 166 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K+D V +++ Q ++L+ E VS+ KG DD++ + LP P Y Sbjct: 167 TKLDKVSKDQVGAQLLALHELLSQEDPEAVVIPVSSKKGVQLDDLVQVILDHLPEGPKFY 226 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVE 251 D I+D E+ RE L E+P+S V ++ ++G + I ++Y+E Sbjct: 227 PDDHITDERQEKRIEELIREAALSGLKAELPHSVAVQIDEMLPSRTREGVLDIHAIMYLE 286 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QK+I+ GK+G + I A+KEI E+L Q V+L L +KV K+W D K Sbjct: 287 RQGQKRIIEGKDGLRFRRIVGNARKEIMELLGQNVYLDLRIKVLKNWQSDAKSL 340 >gi|326560590|gb|EGE10971.1| GTP-binding protein Era [Moraxella catarrhalis 103P14B1] gi|326573971|gb|EGE23921.1| GTP-binding protein Era [Moraxella catarrhalis O35E] gi|326574963|gb|EGE24893.1| GTP-binding protein Era [Moraxella catarrhalis 101P30B1] Length = 331 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 171/315 (54%), Gaps = 17/315 (5%) Query: 6 ITFFNEHKDFVQDNS-RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 I+ F E++ ++ S R+G VA+VG N GKSTL+N +G K+SI + K QTTR + GI Sbjct: 14 ISAFFENRSTPKNESFRAGFVAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGI 73 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-- 122 +++++ QIVF+DTPGI + + + R++ + I V +V+ ++ DL Sbjct: 74 LTDEDRQIVFVDTPGIHSKE--VRAINERMNKAAISALADVDVVLFVVDGIQWREDDLLT 131 Query: 123 LKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 L++++ + +IL++NK D VK + +LL E ++ VSA + H D + + Sbjct: 132 LEKLSVTNLPVILVINKADTVKDKSKLLPVIESFSESFDFADIIPVSALRRHNLDRLQSV 191 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK---- 237 + LP+ P ++ A+QI+D +EI REK+ E+PY V + ++++ Sbjct: 192 IGEYLPIRPAIFDAEQITDRSERFLASEIIREKIMRISGDEVPYDLTVQIDTFKDEPAHK 251 Query: 238 -------KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLIL 290 + I I+VER QK I++G G IK + ++A+K++ + ++ + L L Sbjct: 252 DPETGKWRKAVTFIDATIFVERAGQKSIIIGDKGAKIKQVGIDARKDMEVLFDRKIMLTL 311 Query: 291 FVKVQKDWGHDPKCC 305 +VKV++ W D + Sbjct: 312 WVKVKRGWSDDERAL 326 >gi|238762798|ref|ZP_04623767.1| GTP-binding protein era [Yersinia kristensenii ATCC 33638] gi|238699103|gb|EEP91851.1| GTP-binding protein era [Yersinia kristensenii ATCC 33638] Length = 284 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 151/279 (54%), Gaps = 13/279 (4%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMI 92 GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ K + ++LM Sbjct: 2 GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61 Query: 93 RLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE- 146 R + S++ ++V VV+ + E+ VN ++ ++L +NK+D V + Sbjct: 62 RAASSSLGDVELVIFVVEGTNWTADDEMVVN------KLRSLQCPVLLAINKVDNVTDKT 115 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHF 206 +LL + ++ + +SA KG D + + + +P A + D I+D Sbjct: 116 KLLPHIQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEAVHHFPEDYITDRSQRFM 175 Query: 207 TAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQN 266 +EI REKL L +E+PYS V E++ + G I +I VER QKK+++G G Sbjct: 176 ASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNIHGLILVEREGQKKMVIGNKGSK 235 Query: 267 IKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IKTI +EA++++ ++ E VHL L+VKV+ W D + Sbjct: 236 IKTIGIEARQDMEQMFEAKVHLELWVKVKSGWADDERAL 274 >gi|104783262|ref|YP_609760.1| GTP-binding protein Era [Pseudomonas entomophila L48] gi|122402119|sp|Q1I5V9|ERA_PSEE4 RecName: Full=GTPase Era gi|95112249|emb|CAK16976.1| GTP-binding protein,16S rRNA-binding,ribosome-associated GTPase [Pseudomonas entomophila L48] Length = 300 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 162/295 (54%), Gaps = 16/295 (5%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E + Q +++DTP Sbjct: 6 STRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGDVQAIYVDTP 65 Query: 79 GIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 G+ A D + ++ M R + + +K D+V VVD R + +L+ + + LI+ + Sbjct: 66 GMHKANDKALNRYMNRNASAALKDVDVVIFVVDRTRWTDED-QLVLERVQYVTGPLIIAV 124 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPW 191 NK D R+ E+AE+ L ++++ +SA +GH D + + LP Sbjct: 125 NKTD-----RMEEKAELIPHLQWLQEQLPNAEVMPISAQQGHNLDALEAQIAKHLPENDH 179 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYV 250 + DQI+D AE+ REK+ L E+PY V E++ K+ G +L I +I V Sbjct: 180 FFPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGHVLHIHALILV 237 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ER QKKI++G G+ IK I EA+K++ + + V L L+VKV+ W D + Sbjct: 238 ERDGQKKIIIGDKGERIKRIGSEARKDMEVLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|238750385|ref|ZP_04611886.1| GTP-binding protein era [Yersinia rohdei ATCC 43380] gi|238711316|gb|EEQ03533.1| GTP-binding protein era [Yersinia rohdei ATCC 43380] Length = 284 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 150/279 (53%), Gaps = 13/279 (4%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMI 92 GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ K + ++LM Sbjct: 2 GKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMN 61 Query: 93 RLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE- 146 R + S++ ++V VV+ + E+ VN ++ ++L +NK+D V + Sbjct: 62 RAASSSLGDVELVIFVVEGTNWTADDEMVVN------KLRSLQCPVLLAINKVDNVTDKS 115 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHF 206 +LL + ++ + +SA KG D + + LP A + D I+D Sbjct: 116 KLLPHIQFLSQQMNFLDVVPISAEKGLNVDTIAGIVRKLLPEAGHHFPEDYITDRSQRFM 175 Query: 207 TAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQN 266 +EI REKL L +E+PYS V E++ + G I +I VER QKK+++G G Sbjct: 176 ASEIIREKLMRFLGEELPYSVTVEIEQFVPNERGGYNIHGLILVEREGQKKMVIGNKGSK 235 Query: 267 IKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IKTI +EA++++ ++ + VHL L+VKV+ W D + Sbjct: 236 IKTIGIEARQDMEQMFDAKVHLELWVKVKSGWADDERAL 274 >gi|167837347|ref|ZP_02464230.1| GTP-binding protein Era [Burkholderia thailandensis MSMB43] Length = 299 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 154/285 (54%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q +F+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I + L L+ N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGTPTL-LVAN 126 Query: 139 KIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L + +L + +SA + ++N + LP +Y D Sbjct: 127 KLDRVSDKGTLYPFFQKMGELREFAEIVPLSAKHPEDIERLMNTVKPYLPEGDAIYGEDD 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S VV +K+EE +G + + I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVVIDKFEE--EGRLTRVFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++G+ G +K IS EA++++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGRKGAKLKQISTEARQDMEKLFDGPVYLETFVKVRSGWADN 289 >gi|162454228|ref|YP_001616595.1| GTP binding protein [Sorangium cellulosum 'So ce 56'] gi|161164810|emb|CAN96115.1| GTP binding protein [Sorangium cellulosum 'So ce 56'] Length = 310 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 151/293 (51%), Gaps = 20/293 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG N GKSTL+N +G ++IV+ QTTR + G+V ++I LDTPG+ + Sbjct: 1 MALVGRPNVGKSTLLNAALGHPLAIVSPTPQTTRDAILGVVHHGPAEIALLDTPGLHRPR 60 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH-----------------DLLKEIA 127 ++M + + + AD++ V ++ ++ LL ++ Sbjct: 61 TELGRVMNQAAREAARGADVIVFVTEAPDPARLPRRVKEGEDGPPLAPHPSDLTLLADLG 120 Query: 128 KRSSRLILILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + ++ +LNK+D ++ + LL + KL +SA + G VL+ + Sbjct: 121 SEAP-VVFVLNKVDRMRDKALLLPLLDAFAKLREFAAIVPISALREDGVQRVLDEVAKLC 179 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIR 245 P W ++ D+++D P F AE RE++ E+P++S V E++ E +G++ I Sbjct: 180 PERDWGFAPDELTDRPTRFFAAEYVREQILRATKAEVPHASAVQIERYVEPTGEGALHID 239 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I+VERP QKKI++G + +K I EA+ I E++ + V+L L+V+V +W Sbjct: 240 ATIHVERPGQKKILIGAGAEQLKRIGTEARLRIEELVGRQVNLKLWVRVTPEW 292 >gi|261365608|ref|ZP_05978491.1| GTP-binding protein Era [Neisseria mucosa ATCC 25996] gi|288565938|gb|EFC87498.1| GTP-binding protein Era [Neisseria mucosa ATCC 25996] Length = 308 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 166/301 (55%), Gaps = 21/301 (6%) Query: 15 FVQDNS------RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F+Q+ S R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ Sbjct: 6 FLQNESNHPADYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDD 65 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKE 125 +Q VF+DTPG F K + L RL+ + + D V VV++ R + ++K+ Sbjct: 66 TAQFVFVDTPG-FQTKHR-NALNDRLNQNVTEALSGVDAVVFVVEAMRFTDAD-RIVMKQ 122 Query: 126 IAKRSSRLILILNKIDCVKP-----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + + +IL++NKID K + ++Q K E VSA G G ++L Sbjct: 123 LPANTP-VILVINKIDKNKAGNGGLQEFIDQISAEFKFAGHE---TVSAKHGLGIANLLA 178 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 L LP + +Y + ++D EI REKLF +L +E+PY+ V E++EE+++G Sbjct: 179 RLRPYLPESVPMYPEEMVTDRSSRFLATEIVREKLFRYLGEELPYAMNVEIEQFEEEENG 238 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I + V++ SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W Sbjct: 239 LYRIYIAVLVDKDSQKAILIGKGGEKLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWAD 298 Query: 301 D 301 D Sbjct: 299 D 299 >gi|322378788|ref|ZP_08053217.1| GTP-binding protein Era [Helicobacter suis HS1] gi|321148818|gb|EFX43289.1| GTP-binding protein Era [Helicobacter suis HS1] Length = 311 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 153/289 (52%), Gaps = 13/289 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV----SEKESQIVFL 75 S++G +AL+G NAGKSTL+N V ++ +++HK TR I++ IV + E Q+VFL Sbjct: 17 SKAGFIALIGRPNAGKSTLINALVYERLCLISHKANATRKILKAIVPYMQGDIECQMVFL 76 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI ++ MI+ ++ D+ + H + + L + IL Sbjct: 77 DTPGICKPTKLLNQAMIKQIRHALESCDLAIFLASIHDSPE-KYQEFLNLAPNKPH--IL 133 Query: 136 ILNKIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 LNK D P ++L A+I V+ +SA KGH + +L + LP +P+ Sbjct: 134 ALNKTDTATPTKIL--AQIKAYQVYSAHFGALIPLSAAKGHHLEILLEEVAKLLPESPFY 191 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y +SD+ E+ RE++F L +EIPY+S V+ + EE K + ++I VE+ Sbjct: 192 YDPKLLSDIQTKEIYKEMIREQIFRFLSEEIPYASDVLIMRIEEGKTRDFIDARII-VEK 250 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQ+++++GK G +K I EA+ +I E+ V L L V VQK+W + Sbjct: 251 ESQQRMVIGKGGSVVKKIGREARLQIEAFSEKKVFLQLEVLVQKNWTQE 299 >gi|312795543|ref|YP_004028465.1| GTP-binding protein era [Burkholderia rhizoxinica HKI 454] gi|312167318|emb|CBW74321.1| GTP-binding protein era [Burkholderia rhizoxinica HKI 454] Length = 323 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 155/289 (53%), Gaps = 9/289 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q R G +A+VG N GKSTL+N VG KVSI + K QTTR + GI + ++Q +F+D Sbjct: 30 QTGFRCGMIAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIRTLDDAQFIFVD 89 Query: 77 TPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 TPG F + + ++ + R ST+ D+V VV++ R + L E+ S + Sbjct: 90 TPG-FQTRHGSALNRSLNRAVTSTLTSVDVVLFVVEAGRYGPDDQRVL--ELIPPSVPTV 146 Query: 135 LILNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L+ NKID + + LL + L +SA + +L L +LPL +Y Sbjct: 147 LLANKIDKLSDKSALLPFLKSTAALRAFRDVVPMSAKQPDDITRLLKILRPSLPLGEPIY 206 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVER 252 D+++D AEI REK+F E+PY+S V+ +K+E+ +G + I I V+R Sbjct: 207 GEDELTDRSERFLAAEILREKVFRWTGDELPYTSTVLIDKFEQ--EGRLRRIFATILVDR 264 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K +++G+ G +K IS EA+ ++ ++ + V+L FVK++ W + Sbjct: 265 DSHKAMIIGQKGAKLKQISTEARLDMEQLFDGRVYLETFVKIKSGWADN 313 >gi|152981217|ref|YP_001353061.1| GTP-binding protein Era [Janthinobacterium sp. Marseille] gi|151281294|gb|ABR89704.1| GTP-binding protein Era [Janthinobacterium sp. Marseille] Length = 300 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 161/288 (55%), Gaps = 15/288 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N +GAKVSI + K QTTR + GI + +++Q V++DTPG Sbjct: 11 RCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVEDAQFVYVDTPG- 69 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + ++ +K + R +T+ AD++ V+++ + + L ++ ++ IL++N Sbjct: 70 FQTRHSNALNKTLNRTVTNTLTAADVILYVIEAGTFGQADQQVL--DLIPKNVPCILVIN 127 Query: 139 KIDCVKPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K D VK + +L +IA K F VSA + + + LP P ++ D Sbjct: 128 KSDRVKDKAVLLPFAQQIAAKRDFT-AVVPVSAKLRFQLEGLQGEIKKYLPEGPPIFGED 186 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IYVERP 253 I+D AEI REK+F + E+PY+S V+ EK+E + + +R+V I VER Sbjct: 187 DITDRSEKFLAAEIVREKVFRFVGDELPYTSTVLIEKFEVEGN----LRRVFAAILVERD 242 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + K +++G G +K IS +A+ ++ + PV+L ++VKV+ W + Sbjct: 243 THKSMVIGNKGARLKDISTQARLDMERLFGGPVYLEIWVKVKSGWADN 290 >gi|171322522|ref|ZP_02911315.1| GTP-binding protein Era [Burkholderia ambifaria MEX-5] gi|171092149|gb|EDT37557.1| GTP-binding protein Era [Burkholderia ambifaria MEX-5] Length = 287 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 153/282 (54%), Gaps = 9/282 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG F Sbjct: 1 MIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S ++ + R ST+ D++ V+++ R + +L I L LI NKID Sbjct: 60 RHSTALNRSLNRAVTSTLTSVDVILFVIEAGR-FGPDDQKVLDLIPPGMPTL-LIANKID 117 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 V + L + ++L + +SA + +L+ + LP +Y D+++D Sbjct: 118 RVNDKATLFPFMQKVSELREFTELVPLSAQRPEDIKRLLDTIKPYLPEGEPIYGEDELTD 177 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQKKIM 259 AEI REK+F E+PY+S V+ +K+EE +G + I I VER S K ++ Sbjct: 178 RSSRFLAAEILREKVFRWTGDELPYTSTVLIDKFEE--EGRLKRIFATILVERDSHKAMV 235 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +GK G+ +K IS EA+ ++ + + PV+L FVKV+ W + Sbjct: 236 IGKKGEKLKQISTEARMDMERLFDGPVYLETFVKVKSGWADN 277 >gi|53720034|ref|YP_109020.1| GTP-binding protein Era [Burkholderia pseudomallei K96243] gi|53725350|ref|YP_102340.1| GTP-binding protein Era [Burkholderia mallei ATCC 23344] gi|76810513|ref|YP_334275.1| GTP-binding protein Era [Burkholderia pseudomallei 1710b] gi|124386404|ref|YP_001028765.1| GTP-binding protein Era [Burkholderia mallei NCTC 10229] gi|126449368|ref|YP_001081327.1| GTP-binding protein Era [Burkholderia mallei NCTC 10247] gi|126451757|ref|YP_001067086.1| GTP-binding protein Era [Burkholderia pseudomallei 1106a] gi|167720557|ref|ZP_02403793.1| GTP-binding protein Era [Burkholderia pseudomallei DM98] gi|167739550|ref|ZP_02412324.1| GTP-binding protein Era [Burkholderia pseudomallei 14] gi|167816751|ref|ZP_02448431.1| GTP-binding protein Era [Burkholderia pseudomallei 91] gi|167825158|ref|ZP_02456629.1| GTP-binding protein Era [Burkholderia pseudomallei 9] gi|167846655|ref|ZP_02472163.1| GTP-binding protein Era [Burkholderia pseudomallei B7210] gi|167895243|ref|ZP_02482645.1| GTP-binding protein Era [Burkholderia pseudomallei 7894] gi|167911875|ref|ZP_02498966.1| GTP-binding protein Era [Burkholderia pseudomallei 112] gi|167919872|ref|ZP_02506963.1| GTP-binding protein Era [Burkholderia pseudomallei BCC215] gi|237813194|ref|YP_002897645.1| GTP-binding protein Era [Burkholderia pseudomallei MSHR346] gi|254177634|ref|ZP_04884289.1| GTP-binding protein Era [Burkholderia mallei ATCC 10399] gi|254184211|ref|ZP_04890801.1| GTP-binding protein Era [Burkholderia pseudomallei 1655] gi|254191246|ref|ZP_04897750.1| GTP-binding protein Era [Burkholderia pseudomallei Pasteur 52237] gi|254259591|ref|ZP_04950645.1| GTP-binding protein Era [Burkholderia pseudomallei 1710a] gi|254357707|ref|ZP_04973980.1| GTP-binding protein Era [Burkholderia mallei 2002721280] gi|52210448|emb|CAH36431.1| GTP-binding protein Era [Burkholderia pseudomallei K96243] gi|52428773|gb|AAU49366.1| GTP-binding protein Era [Burkholderia mallei ATCC 23344] gi|76579966|gb|ABA49441.1| GTP-binding protein Era [Burkholderia pseudomallei 1710b] gi|124294424|gb|ABN03693.1| GTP-binding protein Era [Burkholderia mallei NCTC 10229] gi|126225399|gb|ABN88939.1| GTP-binding protein Era [Burkholderia pseudomallei 1106a] gi|126242238|gb|ABO05331.1| GTP-binding protein Era [Burkholderia mallei NCTC 10247] gi|148026834|gb|EDK84855.1| GTP-binding protein Era [Burkholderia mallei 2002721280] gi|157938918|gb|EDO94588.1| GTP-binding protein Era [Burkholderia pseudomallei Pasteur 52237] gi|160698673|gb|EDP88643.1| GTP-binding protein Era [Burkholderia mallei ATCC 10399] gi|184214742|gb|EDU11785.1| GTP-binding protein Era [Burkholderia pseudomallei 1655] gi|237503411|gb|ACQ95729.1| GTP-binding protein Era [Burkholderia pseudomallei MSHR346] gi|254218280|gb|EET07664.1| GTP-binding protein Era [Burkholderia pseudomallei 1710a] Length = 299 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 152/285 (53%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q +F+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I + L L+ N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGTPTL-LVAN 126 Query: 139 KIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L + L + +SA ++N + LP +Y D Sbjct: 127 KLDRVSDKDTLYPFFQKMGGLREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDD 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S VV +K+EE +G + + I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVVIDKFEE--EGRLTRVFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA++++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGAKLKQISTEARQDMEKLFDGPVYLETFVKVRSGWADN 289 >gi|167903626|ref|ZP_02490831.1| GTP-binding protein Era [Burkholderia pseudomallei NCTC 13177] Length = 299 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 152/285 (53%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q +F+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I + L L+ N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGTPTL-LVAN 126 Query: 139 KIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L + L + +SA ++N + LP +Y D Sbjct: 127 KLDRVSDKDTLYPFFQKMGGLREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDD 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S VV +K+EE +G + + I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVVIDKFEE--EGRLTRVFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA++++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGAKLKQISTEARQDMEKLFDGPVYLETFVKVRSGWADN 289 >gi|87118655|ref|ZP_01074554.1| GTP-binding protein Era [Marinomonas sp. MED121] gi|86166289|gb|EAQ67555.1| GTP-binding protein Era [Marinomonas sp. MED121] Length = 348 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 156/289 (53%), Gaps = 4/289 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ S+ Q +++DT Sbjct: 53 DITHCGYVAIVGRPNVGKSTLLNHVLGQKLSITSRKPQTTRQQILGVKSQGHVQTIYVDT 112 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ + ++ M + + S + D + V+D+ R + + +L+++ ++L+ Sbjct: 113 PGMHLGEAKAINRFMNKTASSALADVDAILFVIDAERWTQED-QSVLEKVKLARCPVVLV 171 Query: 137 LNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D ++ + LL ++L+ + +SA +G D + + +P Y Sbjct: 172 VNKVDKLEEKDNLLPTLAKLSELMNFAQIVPISALRGKNLDRLERLVEGMMPEGGQFYPE 231 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQI+D +EI REK+ L +E+PY V E++ + + ++ I +I VER Q Sbjct: 232 DQITDRSSRFLASEIVREKITRQLGQEVPYEVAVQIEEFSYEGE-TLHISALILVERNGQ 290 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 K+I++G G+ IK I EA+ ++ + + V L L++KV+ W D + Sbjct: 291 KRIIIGDKGEKIKLIGKEARIDMESMFQAKVMLNLWIKVRAGWSDDERA 339 >gi|91789484|ref|YP_550436.1| GTP-binding protein Era [Polaromonas sp. JS666] gi|91698709|gb|ABE45538.1| GTP-binding protein Era [Polaromonas sp. JS666] Length = 314 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 21/294 (7%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + R G +A+VG N GKSTL+N VG K+SI + K QTTR + G+ + +Q VF+DT Sbjct: 22 ETQRCGLIAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGVRTVGATQFVFVDT 81 Query: 78 PGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLI 134 PG F + ++ ++ + R + D++ VV++ + N+ D + + + I Sbjct: 82 PG-FQTRHGNALNRSLNRTVVGAVNDVDLIVFVVEAG---QFNLADAKVLALLPAKTPAI 137 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPL 188 L+ NK D + +AE+A L +++ +SA + + LP+ Sbjct: 138 LLANKFDLI-----YRRAELAPWLRSMQERHNFAEFVPMSANNAKDIERLFGICEKYLPV 192 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQV 247 PW+Y AD+++D AEI REKLF E+PY+S V+ +K+EE +G++ I Sbjct: 193 QPWMYRADELTDRSDRFMAAEIIREKLFRLTGDELPYTSTVIIDKYEE--EGNLRRIAAT 250 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I VER K +++G+ G+ +K I E++ E+ + V L ++VKV+ W D Sbjct: 251 IVVERDGHKGMVIGEKGEKLKRIGTESRHELETLTGNKVFLEIWVKVRSGWADD 304 >gi|269792674|ref|YP_003317578.1| GTP-binding protein Era [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100309|gb|ACZ19296.1| GTP-binding protein Era [Thermanaerovibrio acidaminovorans DSM 6589] Length = 303 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 14/292 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSGCVAL+G N GKS+L N VG KV V+ K QTTR +RGIV QIV +DTPG+ Sbjct: 6 RSGCVALLGRPNVGKSSLANALVGEKVMAVSPKAQTTRHAIRGIVQGDGYQIVLVDTPGV 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + MI + ++ +C VVD+ + ++ + E + + R +L +NK Sbjct: 66 HEPRHDLGRFMISQIRAALEDVCGICFVVDATSKGISSLDRRVLEWIQEAGRPALLCVNK 125 Query: 140 IDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD----DVLNYLCSTLPLAPWVYS 194 +D + + + + + + VSAT+G D ++ +L +LPL P + Sbjct: 126 VDLLARKDDFWDVVALYQDQYRFDAVVPVSATQGTNLDVLKEAMVKWLPESLPLFPEEFL 185 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD----GSILIRQVIYV 250 D+ EI REK+FL + +E+P+ VV E ++ + + +R I V Sbjct: 186 IDRTERF----LAEEIIREKIFLAVEEEVPHCVAVVVESFKSPDEYPDRKRLAVRASIVV 241 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 E+ QK I++G NG+ IK I A+ ++ PV L L+VKV+ W +P Sbjct: 242 EKEGQKGIIIGANGRMIKAIREAAESDMERAFGYPVDLDLWVKVRPKWRKNP 293 >gi|241763851|ref|ZP_04761896.1| GTP-binding protein Era [Acidovorax delafieldii 2AN] gi|241366895|gb|EER61309.1| GTP-binding protein Era [Acidovorax delafieldii 2AN] Length = 334 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 95/295 (32%), Positives = 156/295 (52%), Gaps = 20/295 (6%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + +++Q +F+DTP Sbjct: 38 GQRCGVIAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTREQTQFIFVDTP 97 Query: 79 GIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 G F + + +K + + I D++ VV++ + L + K +L+ Sbjct: 98 G-FQTRHATALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVL--SLFKPGIPTLLV 154 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCST-LPLAP 190 NK+D V +AEIA L +++ F+ + K G + L +C+ LP Sbjct: 155 ANKLDMVH-----RRAEIAPWLKSMQERHPFAEFVPMSAKNKGDIERLFGICAKYLPEQA 209 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS----ILIRQ 246 W Y+ D+++D +E REKLF E+PY+S VV +K+EE+ + I Sbjct: 210 WWYAEDELTDRSEKFLASETVREKLFRFTGDELPYTSTVVIDKFEEEASKQHKRLVKIAA 269 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I VER + K +++G G+ +K I EA++E+ ++++ V L L+VKV+ W D Sbjct: 270 TIVVERDNHKMMVIGDKGERLKRIGTEARQELEKLMDAKVFLELWVKVRSGWADD 324 >gi|332673692|gb|AEE70509.1| GTP-binding protein Era [Helicobacter pylori 83] Length = 301 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 159/293 (54%), Gaps = 17/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDNLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L ++KID +++L E + A++ + + +SA K + +L + L + Sbjct: 119 LAVSKIDTSTHKQVLQKLQEYQQYASQFLAL---VPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W++ D +SD M EI RE LF L EIPY S VV +K+ E++ + +I V Sbjct: 176 WLFEKDLMSDEEMCDIYKEIIRESLFDFLSDEIPYESDVVIDKFIEEERIDKVYAHII-V 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 E+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 EKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|319956465|ref|YP_004167728.1| GTP-binding protein era [Nitratifractor salsuginis DSM 16511] gi|319418869|gb|ADV45979.1| GTP-binding protein Era [Nitratifractor salsuginis DSM 16511] Length = 302 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 96/296 (32%), Positives = 161/296 (54%), Gaps = 19/296 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G VA+VG NAGKSTL+N VG K+++V+ K Q TR + IV +QI+F+DTPG+ Sbjct: 12 KAGFVAVVGRPNAGKSTLLNHLVGEKLAMVSKKAQATRKRMNIIVMHDNAQIIFVDTPGL 71 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + +K M+ + I AD++ + DS E + LK I K+ + I++L Sbjct: 72 HEKEKLLNKFMLEEALKAIGDADLILFIAPVSDSTAEYE----RFLKRIEKKKTPHIVVL 127 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYS 194 +KID E++L ++IA F E + S K G +++L+ + LP PW++ Sbjct: 128 SKIDQASNEKIL--SKIAEYQKFQEHFVALIPYSVKKNIGREELLDEIVKHLPEHPWLFD 185 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IYVE 251 + ++ + E+ RE LF L EIPY S VV ++ EE++ LI +V I E Sbjct: 186 PEILTTENIRDIYRELIREALFEKLSDEIPYESDVVIDRIEEEE----LIDRVYATIVTE 241 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 + +QK++++G ++IK + A+K + E + ++L L V V+K W + K + Sbjct: 242 KETQKRMIIGNRAESIKRVGAYARKLMEEFSGKKIYLDLHVVVRKGWSKNKKSLEE 297 >gi|21230731|ref|NP_636648.1| GTP-binding protein Era [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769273|ref|YP_244035.1| GTP-binding protein Era [Xanthomonas campestris pv. campestris str. 8004] gi|188992424|ref|YP_001904434.1| GTP-binding protein Era [Xanthomonas campestris pv. campestris str. B100] gi|25008429|sp|Q8PB51|ERA_XANCP RecName: Full=GTPase Era gi|81304768|sp|Q4USF8|ERA_XANC8 RecName: Full=GTPase Era gi|226741404|sp|B0RX26|ERA_XANCB RecName: Full=GTPase Era gi|21112324|gb|AAM40572.1| GTP binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574605|gb|AAY50015.1| GTP binding protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734184|emb|CAP52392.1| GTP-binding protein [Xanthomonas campestris pv. campestris] Length = 298 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 95/295 (32%), Positives = 156/295 (52%), Gaps = 28/295 (9%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q++ +DTPG+ Sbjct: 8 RSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLMLVDTPGL 67 Query: 81 FN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 K + +++M R + +++ D LV+++ R D +A R +L+ Sbjct: 68 HREQKRAMNRVMNRAARGSLEGVDAAVLVIEAGR------WDEEDTLAFR------VLSD 115 Query: 140 IDCVKPERLLEQAEIANKLVFIE--------KTFM----VSATKGHGCDDVLNYLCSTLP 187 D + + + +K +TF VSA K G + +++ L +P Sbjct: 116 ADVPVVLVVNKVDRLKDKTALFPFLAQVSEGRTFAAVHPVSALKRKGLEALVSDLLKLVP 175 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQ 246 A +Y D+I+D E+ RE+L L +E+PY++ V E++ E DG++L I Sbjct: 176 EAEAMYGEDEITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFAE--DGALLRIGA 233 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VI+VER QK I++GK G +K I +A+ ++ + V L +V+V++ W D Sbjct: 234 VIWVEREGQKAIVIGKGGTRLKDIGGKARLQMERLFGAKVFLETWVRVREGWSDD 288 >gi|227503133|ref|ZP_03933182.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49725] gi|227076194|gb|EEI14157.1| GTP-binding protein Era [Corynebacterium accolens ATCC 49725] Length = 345 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 153/294 (52%), Gaps = 10/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RG+V +++Q+V +DTPG+ Sbjct: 48 RSGFVSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHREDAQVVVVDTPGL 107 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D++ L + + ++ I D ++ IA ++ +I I+ Sbjct: 108 HRPRTLLGERLNEVVKETYADVDVIGLTIPADEKIGPGDRWILDNVRSIAPKTP-IIGIV 166 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K+D +++ Q ++L+ E VS+ KG DD++ + LP P Y Sbjct: 167 TKLDKASKDQVGAQLLALHELLSQEDPEAVVIPVSSKKGVQLDDLVQVIVDHLPEGPKFY 226 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVE 251 D I+D E+ RE L E+P+S V ++ ++G + I ++Y+E Sbjct: 227 PDDHITDEGQEKRIEELIREAALSGLKAELPHSVAVQIDEMLPSRTREGVLDIHAIMYLE 286 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QK+I+ GK+G + I A+KEI E+L Q V+L L +KV K+W D K Sbjct: 287 RQGQKRIIEGKDGLRFRRIVGNARKEIMELLGQNVYLDLRIKVLKNWQSDAKSL 340 >gi|317177645|dbj|BAJ55434.1| GTP-binding protein Era [Helicobacter pylori F16] Length = 301 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 159/293 (54%), Gaps = 17/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 ++ G VAL+G NAGKSTL+N + A++++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKVGFVALIGKPNAGKSTLLNTLLNARLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A + + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAKLCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L ++KID +++L E + A++ + + +SA K + +L + L + Sbjct: 119 LAVSKIDTATHKQVLQKLQEYQQYASQFLAL---VPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W++ D +SD M EI RE LF L EIPY S V+ +K+ E++ + +I V Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVIIDKFIEEERIDKVYAHII-V 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 E+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 EKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|269956972|ref|YP_003326761.1| GTP-binding protein Era [Xylanimonas cellulosilytica DSM 15894] gi|269305653|gb|ACZ31203.1| GTP-binding protein Era [Xylanimonas cellulosilytica DSM 15894] Length = 319 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 155/308 (50%), Gaps = 31/308 (10%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG LVG NAGKSTL N VG KV+I++ + QTTR +RGIV ++Q++ +DTPG+ Sbjct: 11 RSGFACLVGRPNAGKSTLTNALVGEKVAIMSARPQTTRHTIRGIVHRDDAQLILVDTPGL 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIV--CLVVDSHRELKVNIHDLLKEIAKRSSRLI---- 134 + + + L T+ D++ CL D KV D + IA + + L+ Sbjct: 71 HRPRTLLGQRLNDLVKETLGEVDVIAFCLPADQ----KVGPGD--RFIAAQLAPLMTGRR 124 Query: 135 -----LILNKIDCVKPERLLEQAEIANKLVFIEKT-----FMVSATKGHGCDDVLNYLCS 184 ++ K D V + L+E ++L + VSA G+ D++ L Sbjct: 125 AVPVVAVVTKADLVDRQTLMEHLLAVDRLASEHEREWAAIVPVSAKDGYQVDELEEVLVK 184 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS--- 241 LP P +Y +++D P AE+ RE + E+P+S VV ++ E++ Sbjct: 185 HLPEGPELYPGGELTDEPEQIMVAELVREAALEGVRDELPHSLAVVVDEIVEREGTGDAT 244 Query: 242 ------ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 + +R ++VER SQK I++G+ G ++ + +A++ I +L V+L L VKV Sbjct: 245 KGRPPLLDVRVNLFVERDSQKAIVIGRGGSRLREVGTQARQGIERLLGARVYLDLHVKVA 304 Query: 296 KDWGHDPK 303 KDW DPK Sbjct: 305 KDWQRDPK 312 >gi|260771921|ref|ZP_05880839.1| GTP-binding protein Era [Vibrio metschnikovii CIP 69.14] gi|260613213|gb|EEX38414.1| GTP-binding protein Era [Vibrio metschnikovii CIP 69.14] Length = 321 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/291 (31%), Positives = 161/291 (55%), Gaps = 8/291 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N G +A+VG N GKSTL+N +G K+SI + K QTTR + G+ ++ + Q V++DTP Sbjct: 24 NQHCGFIAIVGRPNVGKSTLLNNILGQKISITSRKPQTTRHRIMGVDTKGDYQAVYVDTP 83 Query: 79 GI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 G+ K + ++LM R + S++ ++V VVD + +L ++ + + ++L + Sbjct: 84 GLHIEEKRAINRLMNRAASSSLSDVNLVLFVVDG-THWTADDEMVLNKLRQANFPVVLCI 142 Query: 138 NKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK+D VK + ++++ + F++ +SA G D + ++ LP A + Sbjct: 143 NKVDNVKDRNDVMRHMQDLSSLMNFVD-IVPISAKLGKNIDVLHQHVRHHLPKATHHFPE 201 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--EKKDGSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ + DG I +I VER Sbjct: 202 EYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIERFDYNPETDG-FHINALILVERI 260 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++GK G+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 261 GQKKMVIGKKGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERA 311 >gi|308061844|gb|ADO03732.1| GTP-binding protein Era [Helicobacter pylori Cuz20] Length = 301 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 158/294 (53%), Gaps = 19/294 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 L ++KID +++L+ Q + L + +SA K + +L + L + Sbjct: 119 LAVSKIDTATHKQVLQKLQEYQQHASQFLALVP----LSAKKSQNLNALLECISKHLSPS 174 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 W++ D +SD M EI RE LF L EIPY S V+ +K+ E++ + +I Sbjct: 175 AWLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAHII- 233 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 234 VEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|254468693|ref|ZP_05082099.1| GTP-binding protein Era [beta proteobacterium KB13] gi|207087503|gb|EDZ64786.1| GTP-binding protein Era [beta proteobacterium KB13] Length = 293 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 160/286 (55%), Gaps = 7/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A++G N GKSTL+N +G K+SI + K QTTR+ + GI SE++ Q +F+DTPG + Sbjct: 7 GKIAIIGQPNVGKSTLLNFILGQKLSITSRKAQTTRNQILGIHSEQDIQFIFVDTPG-YQ 65 Query: 83 AK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + +K M + S D+V + + ++ I +L+K I + +I ++NKI Sbjct: 66 QKFLNQMNKRMNKSVTSVFHDVDVVIFMSEPKALNEIEI-ELVKMIP-NDTPVINLINKI 123 Query: 141 DCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D VK + ++LE +I ++L +K S +L + LP +++ D I+ Sbjct: 124 DRVKNKNKILELIDINSELQIFKKIIPASIKLKDNQKIILQEISEFLPEQDFIFDVDDIT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AEI REK+F E+PYS V E + E KD I I V++ SQK ++ Sbjct: 184 DKNERFLAAEIIREKIFRLTGDELPYSIAVEIENF-EYKDNLRRIFATILVDKDSQKPVV 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +GK+G+ +K IS E+++++ ++ + + L ++VKVQK+W D + Sbjct: 243 IGKDGEKLKRISSESRRDMEKLFQSKIWLEIWVKVQKNWFDDARAL 288 >gi|126439282|ref|YP_001059799.1| GTP-binding protein Era [Burkholderia pseudomallei 668] gi|126218775|gb|ABN82281.1| GTP-binding protein Era [Burkholderia pseudomallei 668] Length = 299 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 152/285 (53%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q +F+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I + L L+ N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGTPTL-LVAN 126 Query: 139 KIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L + L + +SA ++N + LP +Y D Sbjct: 127 KLDRVSDKDTLYPFFQKMGGLREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDD 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+EE +G + + I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVIIDKFEE--EGRLTRVFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA++++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGAKLKQISTEARQDMEKLFDGPVYLETFVKVRSGWADN 289 >gi|262184631|ref|ZP_06044052.1| GTP-binding protein Era [Corynebacterium aurimucosum ATCC 700975] Length = 331 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 154/293 (52%), Gaps = 8/293 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RG+V +++QIV +DTPG+ Sbjct: 34 RSGFVSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHPIRGLVHREDAQIVLVDTPGL 93 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 + + + + T D++ L + + ++ +L+ + K + + +I I+ Sbjct: 94 HRPRTLLGERLNEVVKDTYADVDVIGLTIPADEKIGPGDRWILENVRKVAPKTPIIGIVT 153 Query: 139 KIDCVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 K+D +++ Q ++L+ E VSAT+ D++ + LP P Y Sbjct: 154 KLDKASKDQVGAQLVALHELLSEENPDAVVIPVSATERVQLDELTQVIVDHLPEGPKFYP 213 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSIL-IRQVIYVER 252 D I+D AE+ RE L E+P+S V V E ++ +L + ++Y+ER Sbjct: 214 DDHITDEDQSKRIAELIRESALSGLKYELPHSVAVEVDEILPSQERPDVLNVHAILYLER 273 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 P QK+I+ GK+G+ + I A+KEI ++L V+L L +KV K+W DPK Sbjct: 274 PGQKRIIEGKDGRRFRRIVGTARKEIIQLLGHNVYLDLRIKVLKNWQSDPKAL 326 >gi|25028740|ref|NP_738794.1| GTP-binding protein Era [Corynebacterium efficiens YS-314] gi|23494026|dbj|BAC18994.1| putative GTP-binding protein [Corynebacterium efficiens YS-314] Length = 323 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 160/308 (51%), Gaps = 12/308 (3%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 G ++F + + F RSG V+ VG N GKSTL N VG K++I + +TTR +RG Sbjct: 17 GSMSFTDTPEGF-----RSGFVSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRG 71 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IH 120 +V +++QI+ +DTPG+ + + + T D++ L + + ++ I Sbjct: 72 LVHREDAQIIVVDTPGLHRPRTLLGERLNESVKDTYSDVDLIGLTIPATDKIGPGDRWIL 131 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVL 179 D ++ A ++ ++ I+ KID +++ Q ++L+ E + VS+ G D + Sbjct: 132 DAVRTAAPKTP-IVGIVTKIDKASWDQVAAQLMAVHELLGGESEVVPVSSASGENIDTLA 190 Query: 180 NYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--WEEK 237 + LP P Y D I+D + +E+ RE L E+P+S V ++ +E Sbjct: 191 AVIAGLLPEGPKYYPDDHITDEDIETRMSELIREAALSGLKDELPHSIAVEIDEVLPDEP 250 Query: 238 KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKD 297 + G + + +IYVERP QK I++G N Q + I +++++ ++L + ++L L +K+ K+ Sbjct: 251 RPGMLTVHAIIYVERPGQKDIIMGHNNQRMGRIIHNSRQQLTKLLGKNIYLDLRIKILKN 310 Query: 298 WGHDPKCC 305 W DPK Sbjct: 311 WQSDPKAL 318 >gi|296166310|ref|ZP_06848747.1| GTP-binding protein Era [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898319|gb|EFG77888.1| GTP-binding protein Era [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 305 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 154/289 (53%), Gaps = 7/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V LVG N GKSTL N VG KV+I + + QTTR +RGIV + QI+ +DTPG+ Sbjct: 11 RSGFVCLVGRPNTGKSTLTNALVGTKVAITSTRPQTTRHTIRGIVHRENFQIILVDTPGL 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + K + L T D++ L + + + I D ++ A +++ L+ I+ Sbjct: 71 HRPRTLLGKRLNDLVRDTYGEVDVIGLCIPADEAIGPGDRWIVDQIRSTAPKTT-LVAIV 129 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V + + Q ++LV + VSA G D +++ L + LP P Y Sbjct: 130 TKIDKVPRDWVAAQLVAVSELVGDSAEIVPVSAATGEQVDVLIDVLAAALPAGPAYYPDG 189 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVERPS 254 +++D P AE+ RE + E+P+S VV ++ E +D I + +++VER S Sbjct: 190 ELTDEPEEVLMAELIREAALEGVRDELPHSLAVVIDEVNPREDRDDLIDVHALLFVERDS 249 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 QK I++GK G ++ + A+ +I ++L V+L L VKV K+W DPK Sbjct: 250 QKGIVIGKGGARLRQVGTAARGQIEKLLGTKVYLDLRVKVAKNWQSDPK 298 >gi|227833628|ref|YP_002835335.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC 700975] gi|227454644|gb|ACP33397.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC 700975] Length = 386 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 154/293 (52%), Gaps = 8/293 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RG+V +++QIV +DTPG+ Sbjct: 89 RSGFVSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHPIRGLVHREDAQIVLVDTPGL 148 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 + + + + T D++ L + + ++ +L+ + K + + +I I+ Sbjct: 149 HRPRTLLGERLNEVVKDTYADVDVIGLTIPADEKIGPGDRWILENVRKVAPKTPIIGIVT 208 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT----FMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 K+D +++ Q ++L+ E VSAT+ D++ + LP P Y Sbjct: 209 KLDKASKDQVGAQLVALHELLSEENPDAVVIPVSATERVQLDELTQVIVDHLPEGPKFYP 268 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSIL-IRQVIYVER 252 D I+D AE+ RE L E+P+S V V E ++ +L + ++Y+ER Sbjct: 269 DDHITDEDQSKRIAELIRESALSGLKYELPHSVAVEVDEILPSQERPDVLNVHAILYLER 328 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 P QK+I+ GK+G+ + I A+KEI ++L V+L L +KV K+W DPK Sbjct: 329 PGQKRIIEGKDGRRFRRIVGTARKEIIQLLGHNVYLDLRIKVLKNWQSDPKAL 381 >gi|134295165|ref|YP_001118900.1| GTP-binding protein Era [Burkholderia vietnamiensis G4] gi|134138322|gb|ABO54065.1| GTP-binding protein Era [Burkholderia vietnamiensis G4] Length = 299 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 155/285 (54%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q +F+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D++ V+++ R + +L I + L LI N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDLILFVIEAGR-FGPDDQKVLDLIPPGAPTL-LIAN 126 Query: 139 KIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L + + L + +SA + +L+ + LP +Y D+ Sbjct: 127 KVDRVGDKATLFPFMQKMSALREFTELVPLSAQRPEDIKHLLDTIKPHLPEGQPIYGEDE 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+EE +G + I I VER K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVLIDKFEE--EGRLKRIFATILVERDMHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G+ +K IS EA+ ++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGEKLKQISTEARLDMEKLFDGPVYLETFVKVKSGWADN 289 >gi|325981701|ref|YP_004294103.1| GTP-binding protein Era [Nitrosomonas sp. AL212] gi|325531220|gb|ADZ25941.1| GTP-binding protein Era [Nitrosomonas sp. AL212] Length = 297 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 161/287 (56%), Gaps = 13/287 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R+G VA++G N GKSTL+N+ V K+SI + K QTTR + GI++++++Q VF+DTP Sbjct: 6 NFRTGYVAIIGRPNVGKSTLLNKLVKQKISITSKKAQTTRFRINGILTDEQTQFVFVDTP 65 Query: 79 GIFNAKDS-YHKLMIRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRL 133 G S + M R+ +++ +++ V+++ R++ V +I + + Sbjct: 66 GFQTHYASVLNTAMNRVVTQSMREVNVILFVIEAMCLDQRDIAV------LKILPANVPI 119 Query: 134 ILILNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 IL++NKID RLL ++V VSA ++LN + + LP++ + Sbjct: 120 ILVVNKIDKLADKNRLLPFLGEVAQVVKFSDIIPVSAMYKIQLAELLNTIRNYLPVSEPL 179 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y D+I+D E REKLF + EIPYS+ VV ++++ + + I V++ Sbjct: 180 YDKDEITDRSERFLAGEFIREKLFRLVGDEIPYSTSVVIDQFKLENHLH-KVYATILVDK 238 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 P+QK I++GK G+ +K I+ +A+K++ + + V+L ++VKV+ W Sbjct: 239 PNQKAIIIGKKGEKLKQIASQARKDMELLFGEKVYLEVWVKVKSGWA 285 >gi|170699586|ref|ZP_02890626.1| GTP-binding protein Era [Burkholderia ambifaria IOP40-10] gi|172060070|ref|YP_001807722.1| GTP-binding protein Era [Burkholderia ambifaria MC40-6] gi|170135537|gb|EDT03825.1| GTP-binding protein Era [Burkholderia ambifaria IOP40-10] gi|171992587|gb|ACB63506.1| GTP-binding protein Era [Burkholderia ambifaria MC40-6] Length = 287 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 152/282 (53%), Gaps = 9/282 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG F Sbjct: 1 MIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S ++ + R ST+ D++ V+++ R + +L I L LI NKID Sbjct: 60 RHSTALNRSLNRAVTSTLTSVDVILFVIEAGR-FGPDDQKVLDLIPPGMPTL-LIANKID 117 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 V + L + + L + +SA + +L+ + LP +Y D+++D Sbjct: 118 RVTDKATLFPFMQQMSGLREFTELVPLSAQRPEDIKRLLDTIKPYLPEGEPIYGEDELTD 177 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQKKIM 259 AEI REK+F E+PY+S V+ +K+EE +G + I I VER S K ++ Sbjct: 178 RSSRFLAAEILREKVFRWTGDELPYTSTVLIDKFEE--EGRLKRIFATILVERDSHKAMV 235 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +GK G+ +K IS EA+ ++ + + PV+L FVKV+ W + Sbjct: 236 IGKKGEKLKQISTEARMDMERLFDGPVYLETFVKVKSGWADN 277 >gi|311741366|ref|ZP_07715190.1| GTP-binding protein Era [Corynebacterium pseudogenitalium ATCC 33035] gi|311303536|gb|EFQ79615.1| GTP-binding protein Era [Corynebacterium pseudogenitalium ATCC 33035] Length = 345 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 154/294 (52%), Gaps = 10/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RG+V +++Q++ +DTPG+ Sbjct: 48 RSGFVSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHREDAQVIVVDTPGL 107 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D++ L + + ++ I + ++ IA ++ +I I+ Sbjct: 108 HRPRTLLGERLNEVVKDTYADVDVIGLTIPADEKIGPGDRWILENVRSIAPKTP-IIGIV 166 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K+D +++ Q ++L+ E VS+ +G D+++ + LP P Y Sbjct: 167 TKLDKASKDQVGAQLLALHELLTQEDPNAVVIPVSSKEGVQLDELVQVIVDHLPEGPKFY 226 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVE 251 D I+D E+ RE L E+P+S V ++ ++G + I ++Y+E Sbjct: 227 PDDHITDEGQEKRIEELIREAALSGLKAELPHSVAVQVDEMLPSRTREGVLDIHAILYLE 286 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 RP QK+I+ GK+G + I A+KEI E+L V+L L +KV K+W DPK Sbjct: 287 RPGQKRIIEGKDGLRFRRIVGNARKEIIELLGHNVYLDLRIKVLKNWQSDPKSL 340 >gi|119476420|ref|ZP_01616771.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2143] gi|119450284|gb|EAW31519.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2143] Length = 301 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 165/287 (57%), Gaps = 8/287 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA++G N GKSTL+N +G K+SI + K QTTR V GI +E +Q +F+DTPGI Sbjct: 8 GYVAIIGRPNVGKSTLLNHILGQKISITSRKPQTTRHRVLGIKTENNTQAIFVDTPGIHK 67 Query: 83 AKDS---YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +S ++ M R + STI D+V VV+ + + +L+++ + +IL++NK Sbjct: 68 GTESDKAINRYMNRAASSTITDVDVVVFVVERGKWTDGD-EWVLEQVKRAECPVILVINK 126 Query: 140 IDCVKPE-RLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D ++ + +LL E +K+ F++ +SA G ++ + + LP+ +++ DQ Sbjct: 127 VDQMQDKSQLLPFLEACQHKMNFVD-IIPLSALNGTNLTNLELSIQTKLPMGGYLFPEDQ 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+D AE+ REK+ L +E+PY+ V E +++ S+ I +I VER QK+ Sbjct: 186 ITDRSSRFMAAELVREKVMRQLGEEVPYAMTVEIEDFKDSGK-SLHIHALILVEREGQKR 244 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I++G G +++I +A+ E+ ++ E+ V L L+VKV+ W D + Sbjct: 245 IVIGNKGSRLRSIGQDARLEMEKMFERKVMLKLWVKVKSGWSDDDRA 291 >gi|291613750|ref|YP_003523907.1| GTP-binding protein Era [Sideroxydans lithotrophicus ES-1] gi|291583862|gb|ADE11520.1| GTP-binding protein Era [Sideroxydans lithotrophicus ES-1] Length = 297 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 160/284 (56%), Gaps = 13/284 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG +A+VG N GKSTL+N +G K+SI + K QTTR + GI++E ++Q VF+DTPG F Sbjct: 9 SGFIAIVGRPNVGKSTLLNHLIGQKISITSRKAQTTRHRITGILTEADTQFVFVDTPG-F 67 Query: 82 NAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILIL 137 + ++ ++ M R+ ++++ ++V V+++ + E + LL + +IL++ Sbjct: 68 QTQHTNALNRGMNRVVTNSLREVNVVLFVLEARQFDERDQQVMGLLPQ----DRPVILVI 123 Query: 138 NKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D + + LL E + L VSA +G D +L + +P +Y+ D Sbjct: 124 NKADLLADKSELLPFIEKISALRHFAAIVPVSARQGKQLDTLLEAIRPYIPEGEHLYAED 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQ 255 +I+D AE+ REK+F +E+PYS VV E++ K +G + I I V++ + Sbjct: 184 EITDRNERFLAAELLREKVFRFTGEELPYSVSVVIEQF--KLEGKLRRIHAAILVDKEAH 241 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 K +++G G+ +K I+ +A+ ++ ++ + V L +FVKV+ W Sbjct: 242 KAMLIGSKGEKLKEIATQARLDMEKLFDGKVFLEVFVKVRSGWA 285 >gi|188527646|ref|YP_001910333.1| GTP-binding protein Era [Helicobacter pylori Shi470] gi|226741219|sp|B2UTX1|ERA_HELPS RecName: Full=GTPase Era gi|188143886|gb|ACD48303.1| GTP-binding protein Era [Helicobacter pylori Shi470] Length = 301 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 17/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L ++KID +++L E + A++ + + +SA K + +L + L + Sbjct: 119 LAVSKIDTAVHKQVLQKLQEYQQYASQFLAL---VPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W++ D +SD M EI RE LF L EIPY S V+ +K+ E++ + +I V Sbjct: 176 WLFEKDLMSDEKMCDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAHII-V 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 E+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 EKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|308063687|gb|ADO05574.1| GTP-binding protein Era [Helicobacter pylori Sat464] Length = 301 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 17/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L ++KID +++L E + A++ + + +SA K + +L + L + Sbjct: 119 LAVSKIDTAVHKQVLQKLQEYQQYASQFLAL---VPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 W++ D +SD M EI RE LF L EIPY S V+ +K+ E++ + +I V Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAHII-V 234 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 E+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 235 EKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|325915828|ref|ZP_08178127.1| GTP-binding protein Era [Xanthomonas vesicatoria ATCC 35937] gi|325537949|gb|EGD09646.1| GTP-binding protein Era [Xanthomonas vesicatoria ATCC 35937] Length = 299 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 157/289 (54%), Gaps = 16/289 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+ +DTPG+ Sbjct: 8 RSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLALVDTPGL 67 Query: 81 FN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 K + +++M R + +++ D LV+++ R D +A R + Sbjct: 68 HREQKRAMNRVMNRAARGSLEGVDAAVLVIEAGR------WDEEDTLAFRVLSDAEVPVV 121 Query: 140 IDCVKPERLLEQAEIANKLVFIE--KTFM----VSATKGHGCDDVLNYLCSTLPLAPWVY 193 + K +RL ++ + L + +TF VSA K G + +++ L +P A +Y Sbjct: 122 LVVNKVDRLKDKTALFPFLAQVSEGRTFAAVHPVSALKRKGLEALVSDLLKLVPEAEAMY 181 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 D+I+D E+ RE+L L +E+PY++ V E++ E DG++L I VI+VER Sbjct: 182 GEDEITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFAE--DGALLRIGAVIWVER 239 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G +K I +A+ ++ + V L +V+V++ W D Sbjct: 240 EGQKAIVIGKGGTRLKEIGGKARLQMERLFGAKVFLETWVRVREGWSDD 288 >gi|261749630|ref|YP_003257316.1| putative cell growth GTP-binding protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497723|gb|ACX84173.1| putative GTP-binding protein (cell growth-related) [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 305 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 155/293 (52%), Gaps = 13/293 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N VG +SI+THK QTTR + GIV + +QI+F DTPG Sbjct: 9 KSGFVNIIGFPNVGKSTLMNSLVGEDLSIITHKPQTTRHRILGIVDKYNAQIIFSDTPG- 67 Query: 81 FNAKDSY--HKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLI 134 F K ++ ++M++ +++ ADIV + S + +I + LK I LI Sbjct: 68 FMIKTAFFMQRIMMKYIERSLEDADIVLFTTEIGKFSISDKYFSILNSLKNIKNNKPFLI 127 Query: 135 LILNKIDCVKPE----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 LI NKID + E L E +++ + +SA K D +++ + L P Sbjct: 128 LI-NKIDKIGIECDEKILYETINYWHRIFPHSEILPISALKNINQDLLMDKILGLLSEHP 186 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 Y +SD F EI REK+FL KEIPYS + TE ++E + + I IYV Sbjct: 187 PYYPKGFLSDKSKRFFVNEIIREKIFLLYKKEIPYSVEIFTETFKE-NEMFLHIFSSIYV 245 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 ER SQK I++GK G I + + K I + ++ V L L VK+ K+W D K Sbjct: 246 ERNSQKGILIGKKGNYINKLGALSIKGIEKFFKKKVWLKLNVKICKNWRSDYK 298 >gi|163782078|ref|ZP_02177077.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] gi|159882610|gb|EDP76115.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] Length = 304 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 164/297 (55%), Gaps = 14/297 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPG 79 + G V +VG N GKSTL+N +G KVSIVT K TTR V G+ + E+QI+FLDTPG Sbjct: 2 KVGYVTIVGKPNVGKSTLLNNILGRKVSIVTPKPGTTRIRVLGVKNISGEAQIIFLDTPG 61 Query: 80 IFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LI 134 I+ K D K M++++ +++ AD++ ++D+ + ++ + K + +I Sbjct: 62 IYQPKGADVLGKSMLQMARQSLEDADVILFMIDAEEGWRKRDEEVFQSYVKPYAEQKPVI 121 Query: 135 LILNKIDCVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L++NKID + + L+E EI K ++ SA KG +++ L LP Sbjct: 122 LVVNKIDKLGAAKNVLPLIE--EIHKKHPEFKEIVPTSALKGANLEELEKTLLKYLPEGE 179 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVI 248 ++ D ++DLP+ AEI REK+ L +E+P + VV K + ++IR I Sbjct: 180 PLFPEDMLTDLPLRLLAAEIIREKVMLLTREEVPTAVAVVVTDIKPGDADPNVLVIRAEI 239 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 V+R + K I++GK GQ +K I A++E+ I ++ V+L L+VKV+ DW P+ Sbjct: 240 VVDRENLKPIIIGKKGQRLKQIGKLAREELELITQRKVYLELWVKVKPDWRRRPELV 296 >gi|58581479|ref|YP_200495.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623409|ref|YP_450781.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|81311900|sp|Q5H1R1|ERA_XANOR RecName: Full=GTPase Era gi|123522358|sp|Q2P4M0|ERA_XANOM RecName: Full=GTPase Era gi|58426073|gb|AAW75110.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367349|dbj|BAE68507.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 299 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 157/289 (54%), Gaps = 16/289 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ Sbjct: 9 RSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGL 68 Query: 81 FN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 K + +++M R + +++ D LV+++ R D +A R + Sbjct: 69 HREQKRAMNRVMNRAARGSLEGVDAAVLVIEAGR------WDEEDTLAFRVLSDAEVPVV 122 Query: 140 IDCVKPERLLEQAEIANKLVFIE--KTFM----VSATKGHGCDDVLNYLCSTLPLAPWVY 193 + K +RL ++ + L + +TF VSA K G + ++ L +P A ++ Sbjct: 123 LVVNKVDRLKDKTALLPFLAQVSEGRTFAAVHPVSALKRKGLEALVGDLLKLVPEAEAMF 182 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 D+I+D E+ RE+L L +E+PY++ V E++ E DG++L I VI+VER Sbjct: 183 GEDEITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFAE--DGALLRIGAVIWVER 240 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++GK G +K I +A+ ++ + V L +V+V++ W D Sbjct: 241 EGQKAIVIGKGGTRLKEIGGKARLQMERLFGAKVFLETWVRVREGWSDD 289 >gi|126642553|ref|YP_001085537.1| GTP-binding protein Era [Acinetobacter baumannii ATCC 17978] Length = 287 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 151/280 (53%), Gaps = 14/280 (5%) Query: 39 VNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-DSYHKLMIRLSWS 97 +N +G K+SI + K QTTR + GI S ++ Q V++DTPG+ + + +K+M R + S Sbjct: 1 MNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKEVRAINKMMNRAAHS 60 Query: 98 TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPER-LLEQAEIAN 156 ++ ++V V+D+H+ + N +L+++ +IL++NK D +R +L + Sbjct: 61 ALRDVNLVLFVIDAHKWTQ-NDDLVLEKLKNADMPVILVINKADTFGDKREILPLIQERA 119 Query: 157 KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLF 216 KL+ + VSA +G + + + LP P +YS DQI+D +EI REK+ Sbjct: 120 KLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITDRSERFLASEIIREKIM 179 Query: 217 LHLHKEIPYSSCV-----------VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 L +E+PY V V EK K I I+V+RP QK I++G+ G Sbjct: 180 RQLGEELPYDLTVQIESFKTEEATVNEKTGRLKPACTYIDATIFVDRPGQKAIVIGEKGA 239 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +KTI ++A+K++ ++ EQ + L L+VKV+ W D + Sbjct: 240 KLKTIGMDARKDMEKMFEQKIMLTLWVKVKGGWSDDERAL 279 >gi|332970304|gb|EGK09296.1| GTP-binding protein Era [Kingella kingae ATCC 23330] Length = 324 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 161/292 (55%), Gaps = 17/292 (5%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R G +A+VG N GKSTL+N +G K+SI + K QTTR V GI ++ +Q VF+DTP Sbjct: 32 NYRCGFIAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKVTGIYTDDTAQFVFVDTP 91 Query: 79 GIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 G D + L RL+ + + D + V+++ R + + +LK++ K + ++L Sbjct: 92 GF--QTDHRNALNDRLNLNVTEAMSGVDAIAFVLEAMRFTEAD-RTVLKQLPKNTP-VVL 147 Query: 136 ILNKI------DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ++NKI D + +EQ + +E +VSA G ++L L LP + Sbjct: 148 VVNKIDKDKAKDKLALNAFIEQVRAEYEFAAVE---VVSAKHGLRIANLLETLKPFLPES 204 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 +Y D ++D EI REKLF +L +E+PY+ V E+++E ++G I + Sbjct: 205 VPMYPEDMVTDKSSRFLAMEIVREKLFRYLGEELPYAMNVEVEQFKE-ENGMYHIYIAVL 263 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 V++ +QK I++GK G+ +K +S EA+ ++ ++ + V L ++VKV+ W D Sbjct: 264 VDKENQKPIVIGKGGEKLKKMSTEARLDMEKLFDCKVFLKVWVKVKSGWADD 315 >gi|332296079|ref|YP_004438002.1| GTP-binding protein Era-like-protein [Thermodesulfobium narugense DSM 14796] gi|332179182|gb|AEE14871.1| GTP-binding protein Era-like-protein [Thermodesulfobium narugense DSM 14796] Length = 287 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 150/278 (53%), Gaps = 5/278 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V VG TN GK++L+N +G K+ IV+ K QTTR I S +E QI+++D+PG+ Sbjct: 2 KSGFVIFVGKTNVGKTSLINCLLGEKIGIVSDKPQTTRFRTSFIESTEEYQIIYVDSPGV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N K+ H+ + + + ++ +I+ VV+ ++ K+I + R L++NKI Sbjct: 62 HNVKNLLHERLNKKIFDSLDSFEIIVHVVNPTTVFDDFDIEIQKKIFNKRPRY-LVVNKI 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V L I + F ++ F S K G +D+ N + S L P Y D +D Sbjct: 121 DLVDVSNLNFDKSITS---FYDRFFYTSTRKFIGINDLKNAIISDLSDGPMWYPKDMRTD 177 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 + +EI REK+ + +E+P+ V+ EK EK++ I I I VE+ S K I++ Sbjct: 178 MSKEMLVSEIIREKVLNLVRQEVPHGVYVLIEKINEKQN-LIYIEANIIVEKESHKPILI 236 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 G G IK I +E++ EI +I + L LFV ++K+W Sbjct: 237 GHKGSMIKNIGIESRLEIEKIFGKKCVLKLFVSIEKNW 274 >gi|161525339|ref|YP_001580351.1| GTP-binding protein Era [Burkholderia multivorans ATCC 17616] gi|189349924|ref|YP_001945552.1| GTP-binding protein Era [Burkholderia multivorans ATCC 17616] gi|221201352|ref|ZP_03574391.1| GTP-binding protein Era [Burkholderia multivorans CGD2M] gi|221208832|ref|ZP_03581830.1| GTP-binding protein Era [Burkholderia multivorans CGD2] gi|221214087|ref|ZP_03587060.1| GTP-binding protein Era [Burkholderia multivorans CGD1] gi|160342768|gb|ABX15854.1| GTP-binding protein Era [Burkholderia multivorans ATCC 17616] gi|189333946|dbj|BAG43016.1| GTP-binding protein [Burkholderia multivorans ATCC 17616] gi|221166264|gb|EED98737.1| GTP-binding protein Era [Burkholderia multivorans CGD1] gi|221171288|gb|EEE03737.1| GTP-binding protein Era [Burkholderia multivorans CGD2] gi|221178620|gb|EEE11028.1| GTP-binding protein Era [Burkholderia multivorans CGD2M] Length = 299 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 151/285 (52%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + +++Q +F+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQYIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I L LI N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGVPTL-LIAN 126 Query: 139 KIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L + + L + +SA +L + LP +Y D Sbjct: 127 KLDRVNDKTTLYPFMQQVSALREFAEIVPLSAKHPEDIQRLLETIKPYLPEGEPIYGEDD 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S VV +K+EE +G + I I VER S K Sbjct: 187 LTDRSARFLAAEILREKVFRWTGDELPYTSTVVIDKFEE--EGRLKRIFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA+ ++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGAKLKQISTEARMDMEKLFDGPVYLETFVKVKSGWADN 289 >gi|26988167|ref|NP_743592.1| GTP-binding protein Era [Pseudomonas putida KT2440] gi|38257318|sp|Q88MY4|ERA_PSEPK RecName: Full=GTPase Era gi|24982901|gb|AAN67056.1|AE016334_5 GTP-binding protein Era [Pseudomonas putida KT2440] Length = 302 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 161/294 (54%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E + Q +++DTPG Sbjct: 9 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGDVQAIYVDTPG 68 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + A D + ++ M R + + +K D+V VVD + + +L+ + + LI+ +N Sbjct: 69 MHKANDKALNRYMNRNASAALKDVDVVIFVVDRTKWTDED-QLVLERVQYVTGPLIIAVN 127 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ E+AE+ L ++++ +SA +GH D + + LP Sbjct: 128 KTD-----RMEEKAELIPHLQWLQEQLPNAEVMPISAQQGHNLDALEAQIAKHLPENDHF 182 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G +L I +I VE Sbjct: 183 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGHVLHIHALILVE 240 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G+ IK I EA+K++ + + V L L+VKV+ W D + Sbjct: 241 RDGQKKIIIGDKGERIKRIGSEARKDMEVLFDSKVMLNLWVKVKGGWSDDERAL 294 >gi|307609736|emb|CBW99247.1| hypothetical protein LPW_10281 [Legionella pneumophila 130b] Length = 295 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 163/293 (55%), Gaps = 8/293 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +S G +ALVG N GKSTL+NR + K+SI + K QTTR + GI +E E Q V++DTP Sbjct: 2 SSYCGYIALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTP 61 Query: 79 GIF--NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 GI NAK + +++M + + S ++ D++ +VD K +L I + IL+ Sbjct: 62 GIHQGNAK-AINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKQAKVPCILV 119 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D + + +LL E ++ +SA G D++ L + LP P ++ Sbjct: 120 VNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKTYLPEGPHLFPD 179 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQ +D + AE+ REK+F +E+PYS V E + K +G+++ I +I V++ + Sbjct: 180 DQFTDRSIKFLCAELLREKIFRFCGQELPYSVTVDIESF--KDEGNLIRIHALILVDKDN 237 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 K++++G GQ +K ++ A+ ++ ++L++ V L + KV+ W D + Q Sbjct: 238 HKRMIIGDKGQKLKEMATNARLDMEKMLDKKVFLQCWCKVKSGWSDDERILKQ 290 >gi|118602618|ref|YP_903833.1| GTP-binding protein Era [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567557|gb|ABL02362.1| GTP-binding protein Era [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 308 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/301 (33%), Positives = 163/301 (54%), Gaps = 28/301 (9%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG +A+VG N GKSTLVN +G K+SI +H+ QTTR + I + + Q+VF+DTP Sbjct: 16 NFKSGFIAVVGRPNVGKSTLVNELIGQKLSITSHRPQTTRHRIHVIDTTDDYQMVFVDTP 75 Query: 79 GIF----NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 GI A +SY M + + STI + D++ + + + K + +L+ I + + +I Sbjct: 76 GIHMGNCKAINSY---MNKAASSTIANVDVILWLTEVGKWTKED-SRVLEHITRIKTPVI 131 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKT---------FMVSATKGHGCDDVLNYLCST 185 L +NKID +K + + L F++K F +SA K + + + Sbjct: 132 LCINKIDKLKYAKEV--------LPFLDKVSQKYQPTDLFPLSAFKKNDIHALRKLVLHY 183 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LI 244 LP ++ AD I++ +E REKL HL E+PY V E++E+ +G++ I Sbjct: 184 LPEQALIFDADYITNRSEKFIVSEFIREKLMRHLKDELPYDLTVEIEQFEQ--NGNLQRI 241 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I+V++ SQK I++G G +K I EA+K I L++ V L L+VKV++ W +D + Sbjct: 242 SARIFVDKASQKNIVIGNKGVMLKLIGTEARKSIEGFLDRKVFLKLWVKVKQGWSNDKRA 301 Query: 305 C 305 Sbjct: 302 L 302 >gi|85057390|ref|YP_456306.1| GTP-binding protein Era [Aster yellows witches'-broom phytoplasma AYWB] gi|84789495|gb|ABC65227.1| GTP-binding protein Era [Aster yellows witches'-broom phytoplasma AYWB] Length = 295 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 154/280 (55%), Gaps = 6/280 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +A++G N GKSTL+N KV+I + K QTTR+ + GI + +Q +F+DTPGI Sbjct: 8 KSGFIAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRNKIIGICHDSNAQYIFVDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K ++ M + + +IK D++ + DS K DLLK I + + L++NKI Sbjct: 68 NQYKHLLNQKMNNIVFQSIKDVDLILFLTDSFYHPKE--EDLLKIIFQTKKTVFLVINKI 125 Query: 141 DCVKPERLLEQAEIA--NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D +K + ++ ++ N F + +SA K + + + Y D I Sbjct: 126 DSLKSKSQIDAIILSYLNHFSF-QTVIPLSAIKAKNTTFLKENIYQNIKPGVAYYPKDMI 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D + AE+ REK+ ++H+EIP++S V+ EK E+ K+ + I +I VER SQK+I Sbjct: 185 TDQKKEIWIAEMIREKVLYYVHEEIPHASAVIIEKMEQ-KEHLLEIWGLILVERSSQKQI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I ++++ L+ H+ L+VKV +W Sbjct: 244 LIGKAGSKLKQIGTHVRQDLNCHLQIKTHINLWVKVYPNW 283 >gi|146306508|ref|YP_001186973.1| GTP-binding protein Era [Pseudomonas mendocina ymp] gi|189037659|sp|A4XSC5|ERA_PSEMY RecName: Full=GTPase Era gi|145574709|gb|ABP84241.1| GTP-binding protein Era [Pseudomonas mendocina ymp] Length = 299 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/293 (35%), Positives = 160/293 (54%), Gaps = 16/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E E Q V++DTPG Sbjct: 7 SRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGEIQAVYVDTPG 66 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + D + ++ M R + S +K D+V VVD R + +L+++ ++L +N Sbjct: 67 LHKHNDKALNRYMNRSASSALKDVDVVVFVVDRTRWTDED-QLVLEKVQHVKCPILLAVN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D RL +++E+ L ++ + +SA +G D + + LP + Sbjct: 126 KAD-----RLEDKSELLPHLNWLAEQLPQAEIVPISALQGQNLDTLEKLVGERLPESEHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 Y DQI+D AE+ REK+ L E+PY V E++ K+DG IL I +I VE Sbjct: 181 YPEDQITDRSSRFLAAELIREKIMRQLGAELPYQITVEIEEF--KQDGPILHIHGLILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 R QKKI++G G+ IK I +A+K++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGERIKRIGQDARKDMETMFDSKVMLNLWVKVKGGWSDDERA 291 >gi|269115218|ref|YP_003302981.1| GTP-binding Era-like protein [Mycoplasma hominis] gi|268322843|emb|CAX37578.1| GTP-binding protein era homolog [Mycoplasma hominis ATCC 23114] Length = 294 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/277 (32%), Positives = 159/277 (57%), Gaps = 4/277 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G N GKST +N + +SI+T K QTT+ +RGI ++K+ QI+F+DTPGI A+ Sbjct: 7 VCLIGRPNVGKSTFLNNVLNFNLSIITDKPQTTKDNIRGIYNDKDYQIIFIDTPGIHKAE 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNKIDCV 143 + + + S+ I+++D+V + ++ + ++++I + ++ I +++KID + Sbjct: 67 NLLSERLNSKSYEAIENSDVVLFLTPANEAIGTGDKFIIEKINETNNENKIAVISKIDLL 126 Query: 144 KP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 E ++AE KL F EK F + D++N + + +Y DQI D+ Sbjct: 127 NTKEEADKKAEELKKLGF-EKVFGIGQNLPTSYLDLINEIKTYCYEDEPLYPDDQIGDIT 185 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDGSILIRQVIYVERPSQKKIMLG 261 + EI RE +L E+P+S V E++++K +D I +IYV++ SQK I++G Sbjct: 186 LRFMAKEIIRETAINNLKFELPHSIAVEIEQFDDKNEDEDYKIYALIYVKKKSQKPILIG 245 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K+GQ IK IS++++ ++ +I V L + VK+ +DW Sbjct: 246 KDGQMIKKISIDSRHKMEKIFNHKVFLNIKVKISEDW 282 >gi|167035366|ref|YP_001670597.1| GTP-binding protein Era [Pseudomonas putida GB-1] gi|189037661|sp|B0KV26|ERA_PSEPG RecName: Full=GTPase Era gi|166861854|gb|ABZ00262.1| GTP-binding protein Era [Pseudomonas putida GB-1] Length = 300 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 20/296 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E + Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGDVQAIYVDTPG 66 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILI 136 + A D + ++ M R + + +K V +V+ K D +L+ + + LI+ Sbjct: 67 MHKANDKALNRYMNRNASAALK---DVDVVIFVVDRTKWTDEDQLVLERVQYVTGPLIIA 123 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAP 190 +NK D R+ E+AE+ L ++++ +SA +GH D + + LP Sbjct: 124 VNKTD-----RMEEKAELIPHLQWLQEQLPNAEVMPISAQQGHNLDALEAQIAKHLPEND 178 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIY 249 + DQI+D AE+ REK+ L E+PY V E++ K+ G +L I +I Sbjct: 179 HFFPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGHVLHIHALIL 236 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKKI++G G+ IK I EA+K++ + + V L L+VKV+ W D + Sbjct: 237 VERDGQKKIIIGDKGERIKRIGSEARKDMEVLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|148360408|ref|YP_001251615.1| GTP-binding protein Era [Legionella pneumophila str. Corby] gi|148282181|gb|ABQ56269.1| GTP-binding protein Era [Legionella pneumophila str. Corby] Length = 311 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 163/293 (55%), Gaps = 8/293 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +S G +ALVG N GKSTL+NR + K+SI + K QTTR + GI +E E Q V++DTP Sbjct: 18 SSYCGYIALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTP 77 Query: 79 GIF--NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 GI NAK + +++M + + S ++ D++ +VD K +L I + IL+ Sbjct: 78 GIHQGNAK-AINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKQAKVPCILV 135 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D + + +LL E ++ +SA G D++ L + LP P ++ Sbjct: 136 VNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKTYLPEGPHLFPD 195 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQ +D + AE+ REK+F +E+PYS V E + K +G+++ I +I V++ + Sbjct: 196 DQFTDRSIKFLCAELLREKIFRFCGQELPYSVTVDIESF--KDEGNLIRIHALILVDKDN 253 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 K++++G GQ +K ++ A+ ++ ++L++ V L + KV+ W D + Q Sbjct: 254 HKRMIIGDKGQKLKEMATNARLDMEKMLDKKVFLQCWCKVKSGWSDDERILKQ 306 >gi|148244712|ref|YP_001219406.1| GTP-binding protein Era [Candidatus Vesicomyosocius okutanii HA] gi|146326539|dbj|BAF61682.1| GTP-binding protein Era [Candidatus Vesicomyosocius okutanii HA] Length = 316 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 156/293 (53%), Gaps = 10/293 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 + N +SG + +VG N GKSTL+N +G K+SI +H+ QTTR + I + Q+VF+D Sbjct: 22 KSNFKSGFIGVVGRPNVGKSTLINELIGRKLSITSHRPQTTRHRIHAIDTTDNYQMVFVD 81 Query: 77 TPGI----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 TPGI + A +SY M R++ I D++ +++ + K ++ +L+ I + Sbjct: 82 TPGIHMGNYKAINSY---MNRVASLAIMDVDVILWLIEVGKWTKEDLR-VLEHITQIDVP 137 Query: 133 LILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +IL +NKID +K P+ +L + F +SA K + + + LP Sbjct: 138 VILCINKIDKLKSPQEVLPFLNKIFQKYQPTDLFPLSAFKKNDICVLRELVLQYLPKQTL 197 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 ++ AD I+D AE REKL HL E+PY V E++E+ ++ I I+V+ Sbjct: 198 IFDADYITDRSEKFIVAEFIREKLMRHLKDELPYDLTVEIEQFEQDRNLQ-RIASHIFVD 256 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 + SQK I++G G +K I EA+K I L++ V L L VKV++ W D + Sbjct: 257 KASQKNIVIGNKGVMLKLIGTEARKSIEGFLDRKVFLKLRVKVKQGWSDDKRA 309 >gi|146281616|ref|YP_001171769.1| GTP-binding protein Era [Pseudomonas stutzeri A1501] gi|145569821|gb|ABP78927.1| GTP-binding protein Era [Pseudomonas stutzeri A1501] Length = 305 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 159/297 (53%), Gaps = 16/297 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D SR G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q V++D Sbjct: 11 EDVSRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGSVQAVYVD 70 Query: 77 TPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ N + + ++ M R + S +K D+V VVD R + +L+ + + LI+ Sbjct: 71 TPGLHKNGETALNRYMNRTAASALKDVDVVIFVVDRTRWTDED-QAVLERVQYVTGPLIV 129 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLA 189 +NK D R+ ++AE+ L ++ + +SA G + + + LP Sbjct: 130 AVNKTD-----RIEDKAELLPHLRWLAEQLPNAEIVPISAQHGQNLETLEQLVAERLPEG 184 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVI 248 + DQI+D AE+ REK+ L E+PY V E + K++G +L I +I Sbjct: 185 EHFFPEDQITDRSSRFLAAELVREKIMRQLGAEVPYQITVEIEDF--KQEGHVLHIHALI 242 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKKI++G G+ IK I EA+K++ + + V L L+VKV+ W D + Sbjct: 243 LVERDGQKKIIIGDKGERIKRIGQEARKDMEVLFDSKVMLNLWVKVKGGWSDDERAL 299 >gi|327479795|gb|AEA83105.1| GTP-binding protein Era [Pseudomonas stutzeri DSM 4166] Length = 303 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 159/297 (53%), Gaps = 16/297 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D SR G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q V++D Sbjct: 9 EDVSRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGSVQAVYVD 68 Query: 77 TPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ N + + ++ M R + S +K D+V VVD R + +L+ + + LI+ Sbjct: 69 TPGLHKNGETALNRYMNRTAASALKDVDVVIFVVDRTRWTDED-QAVLERVQYVTGPLIV 127 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLA 189 +NK D R+ ++AE+ L ++ + +SA G + + + LP Sbjct: 128 AVNKTD-----RIEDKAELLPHLRWLAEQLPNAEIVPISAQHGQNLETLEQLVAERLPEG 182 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVI 248 + DQI+D AE+ REK+ L E+PY V E + K++G +L I +I Sbjct: 183 EHFFPEDQITDRSSRFLAAELVREKIMRQLGAEVPYQITVEIEDF--KQEGHVLHIHALI 240 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKKI++G G+ IK I EA+K++ + + V L L+VKV+ W D + Sbjct: 241 LVERDGQKKIIIGDKGERIKRIGQEARKDMEVLFDSKVMLNLWVKVKGGWSDDERAL 297 >gi|170782107|ref|YP_001710440.1| GTP-binding protein Era [Clavibacter michiganensis subsp. sepedonicus] gi|169156676|emb|CAQ01834.1| Era-like GTP-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 359 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/289 (30%), Positives = 148/289 (51%), Gaps = 6/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G V+ VG N GKSTL N VG KV+I + K QTTR +RGIV + Q++ +DTPGI Sbjct: 68 RAGFVSFVGRPNVGKSTLTNALVGEKVAITSSKPQTTRKAIRGIVHRPDGQLILVDTPGI 127 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L +T+ D++ L + + + I++ L E + +R I I+ Sbjct: 128 HRPRTLLGERLNALVQTTLGDVDVIGLCIPADERIGPGDRFINEQLDEYPR--ARKIAIV 185 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D + EQ +L + VSA + D ++ L LP++ +Y +D Sbjct: 186 TKTDSASRHAVAEQLLAVQELREWDAIVPVSAVEAIQLDALVGELLKALPVSEQLYPSDA 245 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 +++ + +E+ RE + E+P+S V + +++D +L I ++VER SQK Sbjct: 246 VTEEGLEARISELIREAALEGVQDELPHSLAVTIDDMIQREDKELLEIYANLFVERDSQK 305 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++G G +K + A+ +I ++ V L L VK+ KDW DPK Sbjct: 306 GIVIGAQGSRLKHVGQVARAQIEPLVGTRVFLSLRVKIAKDWQRDPKLL 354 >gi|261838239|gb|ACX98005.1| GTP-binding protein [Helicobacter pylori 51] Length = 301 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 159/295 (53%), Gaps = 21/295 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G N GKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNTGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 LDTPG+ + + ++ M+ + + A++ + H +LK + L K I Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLK-GYEEFLSLCQKPH---I 118 Query: 135 LILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L ++KID +++L E + A++ + + +SA K + +L + L + Sbjct: 119 LAVSKIDTATHKQVLQKLQEYQQYASQFLAL---VPLSAKKSQNLNALLECISKHLSPSA 175 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVI 248 W++ D +SD M EI RE LF L EIPY S V+ +K+ EE+ D + I Sbjct: 176 WLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVIIDKFIEEERIDK---VYAHI 232 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 233 IVEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEK 287 >gi|320094216|ref|ZP_08026020.1| GTP-binding protein Era [Actinomyces sp. oral taxon 178 str. F0338] gi|319978841|gb|EFW10380.1| GTP-binding protein Era [Actinomyces sp. oral taxon 178 str. F0338] Length = 396 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 146/297 (49%), Gaps = 8/297 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D+ +D R+G V++VG N GKSTL N VG KV+I + + +TTR +RGIV Q+V Sbjct: 94 DYPED-FRAGFVSIVGRPNVGKSTLTNALVGQKVAITSGRPETTRHNIRGIVHGDGYQLV 152 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DTPG + K + + + D V + + + + + +E+ + Sbjct: 153 LVDTPGYHRPRTLLGKRLNDMVREALAEVDAVLFCLPADQRIGPGDQFIARELRGVKRPV 212 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 I + K D V ER+++ +L VS+ +G G D + + L T+P +P +Y Sbjct: 213 IAVATKCDAVGRERVMKHLLAIERLGEWSAIVPVSSVEGKGIDHLRDVLAQTVPASPPLY 272 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-------VTEKWEEKKDGSILIRQ 246 ++D AE RE + E+P+S V + + + + + Sbjct: 273 PEGDVTDESRDTLIAEFIREAALEGVRDELPHSLAVQVEEIIERERREGDTRPPLVDVHV 332 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +YVER SQK I++G+ G +K I EA++ I E+L + V+L L V+ KDW DPK Sbjct: 333 NVYVERDSQKAIIIGRRGARLKEIGTEARRHIEELLGKRVYLDLHVRTAKDWQSDPK 389 >gi|54296963|ref|YP_123332.1| GTP-binding protein Era [Legionella pneumophila str. Paris] gi|53750748|emb|CAH12155.1| hypothetical protein lpp1004 [Legionella pneumophila str. Paris] Length = 311 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 163/293 (55%), Gaps = 8/293 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +S G +ALVG N GKSTL+NR + K+SI + K QTTR + GI +E E Q V++DTP Sbjct: 18 SSYCGYIALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEGEFQFVYVDTP 77 Query: 79 GIF--NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 GI NAK + +++M + + S ++ D++ +VD K +L I + IL+ Sbjct: 78 GIHQGNAK-AINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKQAKVPCILV 135 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D + + +LL E ++ +SA G D++ L + LP P ++ Sbjct: 136 VNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKTYLPEGPHLFPD 195 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQ +D + AE+ REK+F +E+PYS V E + K +G+++ I +I V++ + Sbjct: 196 DQFTDRSIKFLCAELLREKIFRFCGQELPYSVTVDIESF--KDEGNLIRIHALILVDKDN 253 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 K++++G GQ +K ++ A+ ++ ++L++ V L + KV+ W D + Q Sbjct: 254 HKRMIIGDKGQKLKEMATNARLDMEKMLDKKVFLQCWCKVKSGWSDDERILKQ 306 >gi|47459181|ref|YP_016043.1| GTP-binding protein Era [Mycoplasma mobile 163K] gi|47458510|gb|AAT27832.1| GTP-binding protein era [Mycoplasma mobile 163K] Length = 297 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 156/289 (53%), Gaps = 24/289 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIFNA 83 ++G NAGKS+L+N + VSI+++K QTTR + GI S++ + Q VF DTPGI + Sbjct: 11 TIIGKPNAGKSSLLNSLLKESVSIISNKPQTTRDQITGIYSDEANTEQFVFTDTPGIHKS 70 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLV--VDSH-RELKVNIHDLLKEIAKRSSRLILILNKI 140 K K M S+S+IK D+V + +D E+ + I L+ + + I I+ KI Sbjct: 71 KTELGKKMNEYSYSSIKDIDLVLFLSPIDYEVEEIDLEIISNLENVKNK----IAIVTKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTF---MVSATKGHGCDDVLNYLCSTLPLAPW----VY 193 D K ++EQ L EK F + +TK N L S L + +Y Sbjct: 127 DLAKDHAIVEQ----RALFLKEKGFTNVLAYSTKNEATR---NLLLSELRSYSYEGFALY 179 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 D +D PM E+ RE L L E+P++ V E++ E +D + I+ VIYV R Sbjct: 180 ENDYYTDKPMRFIAKELIRESLLESLDHEVPHNIAVEIEEYNEARDDQLTEIKAVIYVAR 239 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQK I++G+ G+ IK+I ++++K+I +IL++ + L VKV K+W +D Sbjct: 240 DSQKGIVIGEGGKMIKSIGMKSRKKIEDILQEKIVLKTKVKVSKNWIND 288 >gi|325473670|gb|EGC76859.1| GTP-binding protein era [Treponema denticola F0402] Length = 294 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 154/280 (55%), Gaps = 3/280 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V ++G +AGKST +N G KVSIV+ QTTR+ +RGIV+ + QIVF+DTPG Sbjct: 3 SGVVTIIGRPSAGKSTFLNTASGEKVSIVSAIPQTTRNAIRGIVNTTKGQIVFIDTPGYH 62 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + + ++ + ++ D V ++D RE ++ + ++ ++ LNK D Sbjct: 63 KSEKKLNLKLQEIAKTRLEEGDAVLYLIDLSREFGEEEKNICSLLIPLQNKTVIGLNKAD 122 Query: 142 CVKPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 + L + E+ + L I E+ F +SA K G +++L+ L LP +Y D + Sbjct: 123 LKSSKADLVKKELLSLLPDIPQERIFEISALKDKGINEILSLLIELLPEGEALYPEDIYT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D + EI RE+ LH +EIP++ E E +K+G L +R +YVE+ SQK + Sbjct: 183 DQDVVFRITEIIREQAILHTREEIPHALYAGVEDAEMRKNGKELWVRAFLYVEKESQKAM 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK IK+I +++ E+ +I V L L V+V K+W Sbjct: 243 LIGKGAAVIKSIRIKSMAELRKIFPYKVQLDLQVRVNKNW 282 >gi|227548795|ref|ZP_03978844.1| GTP-binding protein Era [Corynebacterium lipophiloflavum DSM 44291] gi|227079125|gb|EEI17088.1| GTP-binding protein Era [Corynebacterium lipophiloflavum DSM 44291] Length = 307 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 154/293 (52%), Gaps = 11/293 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I+ + +TTR +RGI++ +++Q++ +DTPG+ Sbjct: 13 RSGFVSFVGRPNTGKSTLTNALVGEKIAIMADQPETTRHPIRGIINREDAQVIVVDTPGV 72 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILN 138 + + + + T D++ V + ++ +L++I K ++ ++ I+ Sbjct: 73 HRPRTLLGERLNDVVRDTFADVDVIGFTVPADEKIGPGDRFILEQIRKTKPNAPIVGIVT 132 Query: 139 KIDCVK----PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 K+D ERL+E E+ + + VSA + D +L+ L LP P Y Sbjct: 133 KLDKASKDTVGERLVELHELLGEDC---EVVPVSAIEAVQLDVLLDILVEHLPEGPQFYP 189 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR--QVIYVER 252 ++D +E+ RE+ L +E+P+S V ++ D +R V+++ER Sbjct: 190 EGHVTDEDTETQISELIREEALQGLREELPHSVAVQIDEMHPDPDNPERLRIYAVLFLER 249 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 P QKKI+ G +G+ + I ++K+I E+L Q V L L +KV K+W DPK Sbjct: 250 PGQKKIIEGPDGRRLSGIVHRSRKQIIELLGQNVFLDLRIKVLKNWQSDPKAL 302 >gi|54293917|ref|YP_126332.1| GTP-binding protein Era [Legionella pneumophila str. Lens] gi|53753749|emb|CAH15207.1| hypothetical protein lpl0973 [Legionella pneumophila str. Lens] Length = 311 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 162/293 (55%), Gaps = 8/293 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +S G +ALVG N GKSTL+NR + K+SI + K QTTR + GI +E E Q V++DTP Sbjct: 18 SSYCGYIALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTP 77 Query: 79 GIF--NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 GI NAK + +++M + + S ++ D++ +VD K +L I + IL+ Sbjct: 78 GIHQGNAK-AINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKQAKVPCILV 135 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D + + +LL E ++ +SA G D++ L + LP P ++ Sbjct: 136 VNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKTYLPEGPHLFPD 195 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQ +D AE+ REK+F +E+PYS V E + K +G+++ I +I V++ + Sbjct: 196 DQFTDRSTKFLCAELLREKIFRFCGQELPYSVTVDIESF--KDEGNLIRIHALILVDKDN 253 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 K++++G GQ +K ++ A+ ++ ++L++ V L + KV+ W D + Q Sbjct: 254 HKRMIIGDKGQKLKEMATNARLDMEKMLDKKVFLQCWCKVKSGWSDDERILKQ 306 >gi|86605904|ref|YP_474667.1| GTP-binding protein Era [Synechococcus sp. JA-3-3Ab] gi|86554446|gb|ABC99404.1| GTP-binding protein Era [Synechococcus sp. JA-3-3Ab] Length = 358 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 149/281 (53%), Gaps = 6/281 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG AL+G N GKSTL+N VG K++I + QTTR+ +RGI+S ++QI+++DTPGI Sbjct: 65 KSGFAALIGRPNVGKSTLMNALVGQKIAITSPVAQTTRNRLRGILSLPQAQIIWVDTPGI 124 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNK 139 ++++ + + I D+V VVD + D + E ++ IL+ NK Sbjct: 125 HKPHHRLGEILVHNAQAAIGSVDVVLFVVDG--SVPAGRGDAFIAERIPSATPCILVCNK 182 Query: 140 IDCVKPERLLEQA--EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + E QA E L VSA ++ LP P+ Y D Sbjct: 183 ADLLPKESAARQAHQESYQALRPGAPVVWVSALDPGSLAPLIQATVDLLPPGPYYYPPDL 242 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D P AE+ RE++ LH +E+P+S V ++ EE + ++ +YVER SQK Sbjct: 243 VTDQPERFIMAELIREQVLLHTREEVPHSVAVTIDQVEETPTVTRVL-ATLYVERDSQKG 301 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G+ +K I A+ +I +++ V+L LFVKV+ W Sbjct: 302 ILIGKGGERLKQIGQAARLQIQKLIAGKVYLELFVKVRPHW 342 >gi|148272752|ref|YP_001222313.1| GTP-binding protein Era [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830682|emb|CAN01622.1| GTP-binding protein, era family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 350 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 148/287 (51%), Gaps = 6/287 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G V+ VG N GKSTL N VG KV+I + K QTTR +RGIV + Q++ +DTPGI Sbjct: 59 RAGFVSFVGRPNVGKSTLTNALVGEKVAITSSKPQTTRKAIRGIVHRPDGQLILVDTPGI 118 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + L +T+ D++ L + + + I++ L E + +R I I+ Sbjct: 119 HRPRTLLGERLNALVQTTLGDVDVIGLCIPADERIGPGDRFINEQLDEYPR--ARKIAIV 176 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D + EQ +L + VSA + D ++ L LP++ +Y +D Sbjct: 177 TKTDSASRHAVAEQLLAVQELRDWDAIVPVSAVEAIQLDALVGELLKALPVSEQLYPSDA 236 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 +++ + +E+ RE + E+P+S V + +++D +L I ++VER SQK Sbjct: 237 VTEEGLEARISELIREAALEGVQDELPHSLAVTIDDMIQREDKELLEIYANLFVERDSQK 296 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++G G +K + A+ +I ++ V L L VK+ KDW DPK Sbjct: 297 GIVIGAQGSRLKHVGQVARAQIEPLVGTRVFLSLRVKIAKDWQRDPK 343 >gi|238026618|ref|YP_002910849.1| GTP-binding protein Era [Burkholderia glumae BGR1] gi|237875812|gb|ACR28145.1| GTP-binding protein Era [Burkholderia glumae BGR1] Length = 299 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 154/285 (54%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q +F+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLPDAQYIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I + L LILN Sbjct: 69 FQTRHSTALNRSLNRTVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPKVPTL-LILN 126 Query: 139 KIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D + + L + +L + +SA + +++ + LP +Y D Sbjct: 127 KLDRIHDKSTLFPFLKQMGELRSFAEVVPLSAKQDDDIRRLMDTVKPYLPEGEPIYGQDD 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+EE +G + + I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVIIDKFEE--EGRLTRVFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA+ ++ ++ + PV+L F+KV+ W + Sbjct: 245 AMVIGKKGAKLKQISTEARLDMEKLFDGPVYLETFIKVKSGWADN 289 >gi|296106525|ref|YP_003618225.1| GTP-binding protein Era [Legionella pneumophila 2300/99 Alcoy] gi|295648426|gb|ADG24273.1| GTP-binding protein Era [Legionella pneumophila 2300/99 Alcoy] Length = 295 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 162/293 (55%), Gaps = 8/293 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +S G +ALVG N GKSTL+NR + K+SI + K QTTR + GI +E E Q V++DTP Sbjct: 2 SSYCGYIALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTP 61 Query: 79 GIF--NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 GI NAK + +++M + + S ++ D++ +VD K +L I IL+ Sbjct: 62 GIHQGNAK-AINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKHAKVPCILV 119 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D + + +LL E ++ +SA G D++ L + LP P ++ Sbjct: 120 VNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKTYLPEGPHLFPD 179 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQ +D + AE+ REK+F +E+PYS V E + K +G+++ I +I V++ + Sbjct: 180 DQFTDRSIKFLCAELLREKIFRFCGQELPYSVTVDIESF--KDEGNLIRIHALILVDKDN 237 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 K++++G GQ +K ++ A+ ++ ++L++ V L + KV+ W D + Q Sbjct: 238 HKRMIIGDKGQKLKEMATNARLDMEKMLDKKVFLQCWCKVKSGWSDDERILKQ 290 >gi|257138459|ref|ZP_05586721.1| GTP-binding protein Era [Burkholderia thailandensis E264] Length = 287 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 151/282 (53%), Gaps = 9/282 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG F Sbjct: 1 MIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S ++ + R ST+ D + V+++ R + +L I + L L+ NK+D Sbjct: 60 RHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGTPTL-LVANKLD 117 Query: 142 CVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 V + L + +L + +SA ++N + LP +Y D ++D Sbjct: 118 RVSDKDTLYPFFQKMGELREFAEIVPLSAKHPEDIQRLMNTIKPYLPEGDAIYGEDDLTD 177 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIM 259 AEI REK+F E+PY+S VV +K+EE +G + + I VER S K ++ Sbjct: 178 RSSRFLAAEILREKVFRWTGDELPYTSTVVIDKFEE--EGRLTRVFATILVERDSHKAMV 235 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +GK G +K IS EA++++ ++ + PV+L FVKV+ W + Sbjct: 236 IGKKGAKLKQISTEARQDMEKLFDGPVYLETFVKVRSGWADN 277 >gi|167563526|ref|ZP_02356442.1| GTP-binding protein Era [Burkholderia oklahomensis EO147] gi|167570686|ref|ZP_02363560.1| GTP-binding protein Era [Burkholderia oklahomensis C6786] Length = 299 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 153/287 (53%), Gaps = 13/287 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q +F+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTVDDAQYIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I + L L+ N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSIDAILFVIEAGR-FGPDDQKVLDLIPPGTPTL-LVAN 126 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW---VYSA 195 K+D V + L K+ + + + +D+L + P P +Y Sbjct: 127 KLDRVSDKDTL--YPFFQKMGALREFAEIVPLSAKHSEDILRLTDTIKPYLPEGEPIYGE 184 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 D ++D AEI REK+F +E+PY+S VV +K+EE +G + + I VER S Sbjct: 185 DDLTDRSSRFLAAEILREKVFRWTGEELPYTSTVVIDKFEE--EGRLTRVFATILVERDS 242 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K +++GK G +K IS EA++++ ++ + PV+L FVKV+ W + Sbjct: 243 HKAMVIGKKGAKLKQISTEARQDMEKLFDGPVYLETFVKVRSGWADN 289 >gi|259507801|ref|ZP_05750701.1| GTP-binding protein Era [Corynebacterium efficiens YS-314] gi|259164594|gb|EEW49148.1| GTP-binding protein Era [Corynebacterium efficiens YS-314] Length = 305 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 153/291 (52%), Gaps = 7/291 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RG+V +++QI+ +DTPG+ Sbjct: 11 RSGFVSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGLVHREDAQIIVVDTPGL 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + T D++ L + + ++ I D ++ A ++ ++ I+ Sbjct: 71 HRPRTLLGERLNESVKDTYSDVDLIGLTIPATDKIGPGDRWILDAVRTAAPKTP-IVGIV 129 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID +++ Q ++L+ E + VS+ G D + + LP P Y D Sbjct: 130 TKIDKASWDQVAAQLMAVHELLGGESEVVPVSSASGENIDTLAAVIAGLLPEGPKYYPDD 189 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--WEEKKDGSILIRQVIYVERPS 254 I+D + +E+ RE L E+P+S V ++ +E + G + + +IYVERP Sbjct: 190 HITDEDIETRMSELIREAALSGLKDELPHSIAVEIDEVLPDEPRPGMLTVHAIIYVERPG 249 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G N Q + I +++++ ++L + ++L L +K+ K+W DPK Sbjct: 250 QKDIIMGHNNQRMGRIIHNSRQQLTKLLGKNIYLDLRIKILKNWQSDPKAL 300 >gi|282858168|ref|ZP_06267363.1| GTP-binding protein Era [Pyramidobacter piscolens W5455] gi|282584090|gb|EFB89463.1| GTP-binding protein Era [Pyramidobacter piscolens W5455] Length = 303 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 159/294 (54%), Gaps = 15/294 (5%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +Q + R+G VA++G N GKS+L+NR + K+SIV+ K QTTR + G+ + SQI+F+ Sbjct: 1 MQTDFRAGVVAVIGRPNVGKSSLLNRILKYKLSIVSAKPQTTRDNILGLYNGAASQILFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV--DSHRELKVN--IHDLLKEIAKRSS 131 DTPGI + + ++ + S ++ A++V VV D E N I +L++ Sbjct: 61 DTPGIHAPLNKLGERLVERAVSGLEDANVVLYVVTIDDRPEQSENDRILKVLRDYP--GI 118 Query: 132 RLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++L +NK+D ++L + K + + VSA G + ++ L S LP+A Sbjct: 119 PVVLAVNKVDLPGSRSKILPLIDRFTKKMKLRDIVPVSAKDGTNDEVLVKTLESLLPVAA 178 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE------KWEEKKDGSILI 244 +Y D I+D E+ REK+ +E+P+S V E ++ E++D + I Sbjct: 179 PLYPDDMITDRTERFIAQELIREKVIACTDEEVPHSVAVEIEEFKSPDEYPERRD--LFI 236 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 R +YVER Q+ I+LG+ G+ IK+I A+K + E+ +L L+VKV K W Sbjct: 237 RATVYVEREGQRAIILGRKGEKIKSIGTAARKALEEMTGHKTYLELWVKVNKGW 290 >gi|39939111|ref|NP_950877.1| GTP-binding protein Era [Onion yellows phytoplasma OY-M] gi|39722220|dbj|BAD04710.1| glycyl-tRNA synthetase [Onion yellows phytoplasma OY-M] Length = 295 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 153/280 (54%), Gaps = 6/280 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +A++G N GKSTL+N KV+I + K QTTR + GI E +Q +F+DTPGI Sbjct: 8 KSGFIAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRHKIIGICHEPNAQYIFVDTPGI 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K ++ M +++ +IK D++ + DS K LLK I + + L++NKI Sbjct: 68 NQYKHLLNQKMNNIAFQSIKDVDLILFLTDSFYHPKE--ETLLKMIFQTKKPVFLVINKI 125 Query: 141 DCVKPERLLEQAEIA--NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D +K + ++ ++ N F + +SA K + + + Y D I Sbjct: 126 DRLKNKSQIDAIILSYLNHFSF-QTVIPLSAIKAKNTTFLKENIYQNIKPGVAYYPQDMI 184 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 +D + AEI REK+ ++H+EIP++S V+ EK E+ K+ + I +I VER SQK+I Sbjct: 185 TDQKKELWIAEIIREKVLYYVHEEIPHASAVIIEKMEQ-KEHLLEIWGLILVERSSQKQI 243 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK G +K I ++++ L+ H+ L+VKV +W Sbjct: 244 LIGKAGSKLKQIGTHVRQDLNCHLQIKTHINLWVKVYPNW 283 >gi|62391126|ref|YP_226528.1| GTP-binding protein Era [Corynebacterium glutamicum ATCC 13032] gi|41326465|emb|CAF20627.1| BEX PROTEIN (GTP-BINDING PROTEIN ERA HOMOLOG) [Corynebacterium glutamicum ATCC 13032] Length = 332 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 150/293 (51%), Gaps = 5/293 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG V+ VG N GKSTL N VG K++I ++ +TTR +RG+V +QI+ +DT Sbjct: 35 DGFRSGFVSFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGLVHRDNAQIIVVDT 94 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LIL 135 PG+ + + + T D++ V ++ ++ +L+ + K S + ++ Sbjct: 95 PGLHRPRTLLGERLNEAVKDTYADVDLIGFTVPANEKIGPGDRWILEAVRKVSPKTPILG 154 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYS 194 I+ K D V + + Q ++L+ + VS+T G + ++ + LP P Y Sbjct: 155 IITKADSVSRDLVAAQLMAVHELLGGNSEVVPVSSTSGENVETLIKVMTDLLPEGPKFYP 214 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVER 252 D I+D AE RE L E+P+S V ++ + +++G + + +IYVER Sbjct: 215 DDHITDEDTNTRIAEAIREAALSGLKNELPHSVAVEVDEILPDPERNGVLAVHAIIYVER 274 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G GQ + I ++++I +IL Q V L L +KV K+W DPK Sbjct: 275 VGQKDIIVGHKGQRLGRIIHTSRQDIIKILGQNVFLDLRIKVLKNWQSDPKAL 327 >gi|29654793|ref|NP_820485.1| GTP-binding protein Era [Coxiella burnetii RSA 493] gi|161829871|ref|YP_001597344.1| GTP-binding protein Era [Coxiella burnetii RSA 331] gi|1706686|sp|P51836|ERA_COXBU RecName: Full=GTPase Era gi|189037265|sp|A9N941|ERA_COXBR RecName: Full=GTPase Era gi|439872|gb|AAA69691.1| GTP-binding protein [Coxiella burnetii] gi|29542061|gb|AAO90999.1| GTP-binding protein [Coxiella burnetii RSA 493] gi|161761738|gb|ABX77380.1| GTP-binding protein Era [Coxiella burnetii RSA 331] Length = 295 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 157/286 (54%), Gaps = 7/286 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G A++G N GKSTL+N+ + K+SI + K QTTR + G+ + K+ Q++++DTPG+ Sbjct: 7 GYAAIIGRPNVGKSTLLNQLLEQKISITSRKPQTTRYQILGVKTFKDIQVIYVDTPGLHA 66 Query: 83 AKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELK-VNIHDLLKEIAKRSSRLILILNKI 140 + + ++ M R + ++ D + V++ H E + + D LKEI + + L++NK+ Sbjct: 67 GTERTINRYMNRTARGALRDVDAIVFVIEPHWESQDAWVLDNLKEI---ETPVFLVINKV 123 Query: 141 DCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D +K LL E + L +K +SA G + + +P +P+ + +Q++ Sbjct: 124 DKIKNRAELLPLIEKVSSLYAFQKITPLSAKTGDQVGTLEQAVHQLMPESPFYFPPEQVT 183 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D +EI REKL L +EIPYS V ++ K++ I I VI+VE+ SQK I+ Sbjct: 184 DRSDQFMASEIIREKLMRLLGQEIPYSLAVTLIEF-RKEEKIIRISAVIWVEKKSQKGIV 242 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +GK G+ +K + A+ ++ + + V L L+VKV+ W + + Sbjct: 243 IGKGGERLKRVGTNARLDMEKWFGKRVFLQLWVKVKSGWADNERLL 288 >gi|19553483|ref|NP_601485.1| GTP-binding protein Era [Corynebacterium glutamicum ATCC 13032] gi|25008421|sp|Q8NNB9|ERA_CORGL RecName: Full=GTPase Era gi|21325056|dbj|BAB99678.1| GTPases [Corynebacterium glutamicum ATCC 13032] Length = 305 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 150/293 (51%), Gaps = 5/293 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG V+ VG N GKSTL N VG K++I ++ +TTR +RG+V +QI+ +DT Sbjct: 8 DGFRSGFVSFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGLVHRDNAQIIVVDT 67 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LIL 135 PG+ + + + T D++ V ++ ++ +L+ + K S + ++ Sbjct: 68 PGLHRPRTLLGERLNEAVKDTYADVDLIGFTVPANEKIGPGDRWILEAVRKVSPKTPILG 127 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYS 194 I+ K D V + + Q ++L+ + VS+T G + ++ + LP P Y Sbjct: 128 IITKADSVSRDLVAAQLMAVHELLGGNSEVVPVSSTSGENVETLIKVMTDLLPEGPKFYP 187 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVER 252 D I+D AE RE L E+P+S V ++ + +++G + + +IYVER Sbjct: 188 DDHITDEDTNTRIAEAIREAALSGLKNELPHSVAVEVDEILPDPERNGVLAVHAIIYVER 247 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G GQ + I ++++I +IL Q V L L +KV K+W DPK Sbjct: 248 VGQKDIIVGHKGQRLGRIIHTSRQDIIKILGQNVFLDLRIKVLKNWQSDPKAL 300 >gi|52841177|ref|YP_094976.1| GTP-binding protein Era [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628288|gb|AAU27029.1| GTP-binding protein Era [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 311 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 162/293 (55%), Gaps = 8/293 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +S G +ALVG N GKSTL+NR + K+SI + K QTTR + GI +E E Q V++DTP Sbjct: 18 SSYCGYIALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEGEFQFVYVDTP 77 Query: 79 GIF--NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 GI NAK + +++M + + S ++ D++ +VD K +L I + IL+ Sbjct: 78 GIHQGNAK-AINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKQAKVPCILV 135 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D + + +LL E ++ +SA G D++ L + LP P ++ Sbjct: 136 VNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSAKTGLQVDELEGKLKNYLPEGPHLFPD 195 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQ +D AE+ REK+F +E+PYS V E + K +G+++ I +I V++ + Sbjct: 196 DQFTDRSTKFLCAELLREKIFRFCGQELPYSVTVDIESF--KDEGNLIRIHALILVDKDN 253 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 K++++G GQ +K ++ A+ ++ ++L++ V L + KV+ W D + Q Sbjct: 254 HKRMIIGDKGQKLKEMATNARLDMEKMLDKKVFLQCWCKVKSGWSDDERILKQ 306 >gi|302670578|ref|YP_003830538.1| GTP-binding protein Era [Butyrivibrio proteoclasticus B316] gi|302395051|gb|ADL33956.1| GTP-binding protein Era [Butyrivibrio proteoclasticus B316] Length = 364 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 147/274 (53%), Gaps = 13/274 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++DN ++G + L+G N GKSTL+N +G K++I ++K QTTR+ + + ++ + Q++FL Sbjct: 1 MKDNFKTGFITLIGRPNVGKSTLMNHMIGQKIAITSNKPQTTRNKIMTVYTDDDCQMIFL 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI ++K+ + M +++ ST++ D+V +V+ + +++E+ K +IL Sbjct: 61 DTPGIHDSKNKLGEYMTKVAKSTLEEVDVVLWLVEPSTFIGAGEKSIIEELKKCRKPVIL 120 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID V + L + + + ++ V+A KG D++++ + LP P Y Sbjct: 121 VINKIDTVSKDNLDKFENAYRQEMDFDRVVKVAALKGQNIDELMDAIKKLLPFGPPFYDE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 + ++D P AEI REK L E+P+ V E + +V+ RP + Sbjct: 181 ETLTDQPERQIAAEIIREKALRLLQDEVPHGIAVTIETMR-------MREKVVETPRPKK 233 Query: 256 KKIMLGKNGQNIKTISLEA-KKEIAEILEQPVHL 288 K ++ K LEA +KE++ L+ P L Sbjct: 234 K-----RHQHPPKKSKLEAMEKELSSALDNPEDL 262 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%) Query: 239 DGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 DG + I I ER S K I++GK G +K I A+K+I E++ V+L ++VKV+KDW Sbjct: 287 DGIMDIDATIICERDSHKGIVIGKGGAMLKKIGSAARKDIEELVGCQVNLQIWVKVRKDW 346 Query: 299 GHD 301 D Sbjct: 347 RDD 349 >gi|170720260|ref|YP_001747948.1| GTP-binding protein Era [Pseudomonas putida W619] gi|226741227|sp|B1J4E1|ERA_PSEPW RecName: Full=GTPase Era gi|169758263|gb|ACA71579.1| GTP-binding protein Era [Pseudomonas putida W619] Length = 300 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 161/294 (54%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E + Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGDVQAIYVDTPG 66 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + A D + ++ M R + + +K D+V VVD R + +L+ + + LI+ +N Sbjct: 67 MHKANDKALNRYMNRNASAALKDVDVVIFVVDRTRWTDED-QLVLERVQYVTGPLIIAVN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ E+AE+ L ++++ +SA +GH + + + LP Sbjct: 126 KTD-----RMDEKAELIPHLQWLQEQLPNAEVVPISAQQGHNLEALEALIAKHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G +L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGHVLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G+ IK I +A+K++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGERIKRIGSDARKDMETLFDAKVMLNLWVKVKGGWSDDERAL 292 >gi|237752720|ref|ZP_04583200.1| GTP-binding protein Era [Helicobacter winghamensis ATCC BAA-430] gi|229376209|gb|EEO26300.1| GTP-binding protein Era [Helicobacter winghamensis ATCC BAA-430] Length = 296 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 152/287 (52%), Gaps = 5/287 (1%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++N+++G VA++G NAGKST +N +G K+++V+HK TR + ++ E E+QIVF+ Sbjct: 1 MEENTKAGFVAVLGRPNAGKSTFLNTLLGEKLTLVSHKANATRKRMHLVLMEGETQIVFV 60 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI + ++ M++ + ++ D++ + + K++ + E+AK L L Sbjct: 61 DTPGIHKQEKLLNQYMLKEALQALQDCDVLLFLAPASD--KISYYKEFLEMAKDKKHL-L 117 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC-DDVLNYLCSTLPLAPWVYS 194 +L KID V E L E K + + + K G V+ L +P +P+ Y+ Sbjct: 118 LLTKIDSVSKEVLFETMRQYEKFKDCYEALIPISIKDLGSLKRVVEVLAKLMPQSPYYYN 177 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 + +S E+ RE +F +L E+PY S V ++EK + I+ I V + S Sbjct: 178 PEILSPNTTKEIVKELIREAVFENLSDELPYESDVQITLYKEKPNVH-YIKATIIVHKES 236 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK +++GK G +K I EA+ I + Q V L LFVKV W + Sbjct: 237 QKGMVIGKGGATLKRIGKEARASIESFVCQKVFLDLFVKVVPGWSKE 283 >gi|255323739|ref|ZP_05364867.1| GTP-binding protein Era [Corynebacterium tuberculostearicum SK141] gi|255299229|gb|EET78518.1| GTP-binding protein Era [Corynebacterium tuberculostearicum SK141] Length = 345 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 153/294 (52%), Gaps = 10/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RG+V ++Q++ +DTPG+ Sbjct: 48 RSGFVSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHTIRGLVHRDDAQVIVVDTPGL 107 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D++ L + + ++ I + ++ IA ++ +I I+ Sbjct: 108 HRPRTLLGERLNEVVKDTYADVDVIGLTIPADEKIGPGDRWILENVRSIAPKTP-IIGIV 166 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K+D +++ Q ++L+ + VS+ +G D+++ + LP P Y Sbjct: 167 TKLDKASKDQVGAQLLALHELLSQDDPNAVVIPVSSKEGVQLDELVQVIVDHLPEGPKFY 226 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIYVE 251 D I+D E+ RE L E+P+S V ++ ++G + I ++Y+E Sbjct: 227 PDDHITDEGQEKRIEELIREAALSGLKAELPHSVAVQVDEMLPSRTREGVLDIHAILYLE 286 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 RP QK+I+ GK+G + I A+KEI E+L V+L L +KV K+W DPK Sbjct: 287 RPGQKRIIEGKDGLRFRRIVGNARKEIIELLGHNVYLDLRIKVLKNWQSDPKSL 340 >gi|94502128|ref|ZP_01308629.1| GTP-binding protein Era [Oceanobacter sp. RED65] gi|94425730|gb|EAT10737.1| GTP-binding protein Era [Oceanobacter sp. RED65] Length = 299 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 152/285 (53%), Gaps = 5/285 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTL+N +G K+SI + K QTTR + G+ + Q +++DTPG+ Sbjct: 7 GYIAIVGRPNVGKSTLLNNILGQKLSITSRKPQTTRHQILGMKTTANVQAIYVDTPGLHE 66 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ + ++ + +++ + I D+V ++D + + + +L++I IL++NK+ Sbjct: 67 GYSEKALNRYINKVATTAINDVDLVVFLIDRTKWMPED-QSVLEKIQASKVPCILVINKL 125 Query: 141 D-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + LL E ++ ++ F +SA G+ ++ + LP Y DQ + Sbjct: 126 DHLADKQSLLPYLEEVSQRHDFKEVFPISAKTGYNVAELEAAIARQLPEGMHFYDEDQFT 185 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AE+ REK+ L E+PYS V E++EE ++ I I +I VER QKKI+ Sbjct: 186 DRSARFLAAELVREKIMRLLGDELPYSMTVEIEQFEESEN-LITIHALILVERDGQKKIL 244 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +G G+ IK I A+ ++ ++ V L +VKV+ W D + Sbjct: 245 IGDKGERIKQIGRAARLDMEDMFGMKVMLHTWVKVKSGWSDDERA 289 >gi|332529448|ref|ZP_08405407.1| gtp-binding protein era [Hylemonella gracilis ATCC 19624] gi|332041094|gb|EGI77461.1| gtp-binding protein era [Hylemonella gracilis ATCC 19624] Length = 296 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 157/294 (53%), Gaps = 24/294 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL+N VG K+SI + K QTTR + GI + +Q VF DTPG F Sbjct: 1 MIAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTVGPTQFVFADTPG-FQT 59 Query: 84 K--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + ++ ++ + + + D+V VV++ + + +LK +A+ ++LI NK+D Sbjct: 60 RHGNALNRSLNKTVQGAVGDVDLVLFVVEAGSFNQAD-EQVLKLLAQ-GVPVLLIANKLD 117 Query: 142 CVKPERLLEQAEIANKLVFIEKTF--------MV--SATKGHGCDDVLNYLCSTLPLAPW 191 +K +AE+A L ++ F MV SA + +L LP W Sbjct: 118 TIK-----HRAELAPWLQEMQHRFERLGAKAEMVPLSAKNPKDVERLLGLCEKYLPEQDW 172 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS----ILIRQV 247 YS D+++D +EI REKLF E+PY+S VV +K+EE+ + + I Sbjct: 173 WYSEDELTDRSEKFLASEIVREKLFRLTGDELPYTSTVVIDKFEEEPGKTASRFVKIAAT 232 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I VER K +++G G+ +K I +EA++E+ ++++ V L L+VKV+ W D Sbjct: 233 IIVERDGHKAMVIGDKGERLKRIGMEARQELEKLMDAKVFLELWVKVRSGWADD 286 >gi|145588594|ref|YP_001155191.1| GTP-binding protein Era [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047000|gb|ABP33627.1| GTP-binding protein Era [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 311 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/311 (31%), Positives = 157/311 (50%), Gaps = 42/311 (13%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + +E+Q +F+DTPG Sbjct: 3 RCGTIAIVGRPNMGKSTLLNALVGQKISITSRKAQTTRHRILGIQNREEAQFIFIDTPG- 61 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVV-------DSHRELKVNIHDLLKEIAKRSS 131 F + ++ +K + R + ++ ++ C VV D + LK+ DL Sbjct: 62 FQTRLMNTLNKALNRTVTTALQDVNVACFVVEAGYFGEDDKKVLKLLPDDL--------- 112 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFM--------------------VSATK 171 ++L+LNK+D L FI++ + +SA Sbjct: 113 PVVLVLNKLDLFNSRFQTPSERDQALLSFIKEMALPWCELGGHEDQKSEFAEIVPMSAKS 172 Query: 172 GHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVT 231 + +L+ L LP A VY D I+D AEI REK+F +E+PY+S VV Sbjct: 173 PGDIERLLDVLEGYLPEAEAVYDGDTITDRSERFLAAEILREKVFRFTGEELPYTSTVVI 232 Query: 232 EKWEEKKDGSI-LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLIL 290 +++ K DG + I I V+R S K +++G+ G+ +K IS +A+ ++ ++ + V L Sbjct: 233 DQF--KMDGKMRRIAATILVDRDSHKAMIIGQKGERLKKISTDARIDMEKLFDGKVFLET 290 Query: 291 FVKVQKDWGHD 301 +VKV++ W D Sbjct: 291 WVKVKRGWADD 301 >gi|197294660|ref|YP_001799201.1| GTP-binding protein Era [Candidatus Phytoplasma australiense] gi|171853987|emb|CAM11950.1| Glycyl-tRNA synthetase [Candidatus Phytoplasma australiense] Length = 292 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 153/282 (54%), Gaps = 9/282 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +A+VG N GKSTL+N K++I + K QTTR + GI E ++Q +F+DTPGI Sbjct: 4 KSGFIAIVGRPNVGKSTLLNVLTNQKIAITSDKPQTTRHKIVGICHESDAQYIFVDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS--HRELKVNIHDLLKEIAKRSSRLILILN 138 K ++ M ++S+ +I D++ V DS H + K +LL I K+ L L++N Sbjct: 64 NQYKYLLNQKMNQISFRSISDVDVILFVTDSFYHPQEK----NLLDFIFKKKKPLFLVIN 119 Query: 139 KIDCVKPERLLEQAEIA--NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID +K + ++ ++ N FI +SA + + ++L + Y + Sbjct: 120 KIDILKSKNKIDAIILSYLNHYPFIN-VIPLSAVESKNIPKLKSFLYQNMQKGVPYYPQN 178 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 I+D +EI REK+ ++H+E+P+++ VV EK + + I +I VE+ SQK Sbjct: 179 IITDQKKEFLMSEIVREKILYYVHEEVPHAATVVIEKIKPLNKDLLEIWVLILVEKNSQK 238 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +I++G G +K I A+K++ +L L+VKV +W Sbjct: 239 QILIGAQGSKLKAIGSHARKDLNAYFNIKSYLHLWVKVVPNW 280 >gi|294101756|ref|YP_003553614.1| GTP-binding protein Era [Aminobacterium colombiense DSM 12261] gi|293616736|gb|ADE56890.1| GTP-binding protein Era [Aminobacterium colombiense DSM 12261] Length = 308 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 164/289 (56%), Gaps = 11/289 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N + G V +VG N GKS+L+N + KVSIV+ K QTTR+ + GI +E E QIVF DTP Sbjct: 7 NFKFGVVPIVGRPNVGKSSLLNNILAYKVSIVSEKPQTTRNAIHGIYNEPEMQIVFTDTP 66 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILI 136 GI + + +++ + ++++AD++ VV+ ++ ++ D +++ + + S+ + L+ Sbjct: 67 GIHRPRHKLGEALVKAAVRSLENADLILYVVEVD-DISISPEDDRIIEILQEVSTPIFLV 125 Query: 137 LNKIDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA-PWVY 193 +NKID V+ RL+ A + + + I VSA KG+ D ++ L LP PW Y Sbjct: 126 VNKIDQVQQSERRLMAVASLFKEKLPIVGALGVSAKKGYNIDKLVQILKDKLPAGFPW-Y 184 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW---EEKKDGSIL-IRQVIY 249 + ++D P EI REK+ L H+E+P+S V E++ +E + +L IR + Sbjct: 185 DEEILTDRPERFLAGEIIREKVLLLTHEEVPHSVAVEVEEYKSPDEYPERDVLYIRANLV 244 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 VER QK I++GK G IK I A+ +I + V L L++KV+ W Sbjct: 245 VEREGQKTILIGKKGSKIKKIGSLARSDIETMTGHRVFLDLWIKVRPAW 293 >gi|66805837|ref|XP_636640.1| hypothetical protein DDB_G0288609 [Dictyostelium discoideum AX4] gi|60465029|gb|EAL63136.1| hypothetical protein DDB_G0288609 [Dictyostelium discoideum AX4] Length = 398 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 141/295 (47%), Gaps = 51/295 (17%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +N+++ VA++GA NAGKSTLVN VG K+ V+ TTR V GI S+ ++QI+F D Sbjct: 109 NENAKTLNVAIIGAPNAGKSTLVNSIVGEKICAVSPTEHTTRDAVLGIYSKDDTQILFHD 168 Query: 77 TPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVD----------------------- 110 TPGI FN + ++ + + L+W +K ADIV LVVD Sbjct: 169 TPGIIKNFN-RMAHVREFVNLAWGVVKEADIVLLVVDATNNNSSDTEFIVGKLEEQMLNL 227 Query: 111 ------------------SHRELKVNIHDLLKEIAKRSSRLILILNKIDCV-KPERLLEQ 151 S+ EL ++D L E IL++NK+D V K E L++ Sbjct: 228 IKRMRMEQTNAKANAATASNEELGAIVNDSLDE-----KEFILVVNKVDLVKKKETLVQM 282 Query: 152 AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEIT 211 N+ TF+VSAT +D+ N+L + W ++ ++ F EI Sbjct: 283 ISQLNEGNIFTDTFIVSATSNIRVEDLTNFLLTKAKPGQWEFTDKTSTNQSDFFRAEEII 342 Query: 212 REKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQN 266 +EKL+ L EIPYS T W K+G + I V + S K +LGKNG N Sbjct: 343 KEKLYSKLRYEIPYSVVQSTIGWTNFKNGDLRIDHDFIVTKSSHKAFILGKNGSN 397 >gi|330815987|ref|YP_004359692.1| GTP-binding protein Era [Burkholderia gladioli BSR3] gi|327368380|gb|AEA59736.1| GTP-binding protein Era [Burkholderia gladioli BSR3] Length = 300 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 153/285 (53%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q +F+DTPG Sbjct: 11 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLPDAQYIFVDTPG- 69 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I K S +LILN Sbjct: 70 FQTRHSTALNRSLNRTVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPK-SVPTLLILN 127 Query: 139 KIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D + + L + +L + +SA ++ + LP +Y D Sbjct: 128 KLDRITDKSSLFPFLKQMGELREFAEVVPLSAKHVDDISRLMETVKPYLPEGEPIYGEDD 187 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+EE +G + + I VER S K Sbjct: 188 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVIIDKFEE--EGRLTRVFATILVERDSHK 245 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA+ ++ ++ + PV+L F+KV+ W + Sbjct: 246 AMVIGKKGAKLKQISTEARLDMEKLFDGPVYLETFIKVKSGWADN 290 >gi|42527400|ref|NP_972498.1| GTP-binding protein Era [Treponema denticola ATCC 35405] gi|81411958|sp|Q73LG9|ERA_TREDE RecName: Full=GTPase Era gi|41817985|gb|AAS12409.1| GTP-binding protein Era [Treponema denticola ATCC 35405] Length = 294 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 153/280 (54%), Gaps = 3/280 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG V ++G +AGKST +N G KVSIV+ QTTR+ +RGIV+ + QIVF+DTPG Sbjct: 3 SGVVTIIGRPSAGKSTFLNTASGEKVSIVSAIPQTTRNAIRGIVNTTKGQIVFIDTPGYH 62 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + + ++ + ++ D V ++D RE ++ + ++ ++ LNK D Sbjct: 63 KSEKKLNLKLQEIAKTRLEEGDAVLYLIDLSREFGEEEKNICSLLIPLQNKTVIGLNKAD 122 Query: 142 CVKPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 + L + E+ + L I E+ F +SA K G +++L+ L LP +Y D + Sbjct: 123 LKSSKADLVKKELLSLLPDIPQERIFEISALKDEGINEILSLLIELLPEGEALYPEDIYT 182 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D + EI RE+ LH +EIP++ E E K+G L +R +YVE+ SQK + Sbjct: 183 DQDVVFRITEIIREQAILHTREEIPHALYAGVEDAEMHKNGKELWVRAFLYVEKESQKAM 242 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++GK IK+I +++ E+ +I V L L V+V K+W Sbjct: 243 LIGKGAAVIKSIRIKSMAELRKIFPYKVQLDLQVRVNKNW 282 >gi|76799814|ref|ZP_00781875.1| GTP-binding protein Era [Streptococcus agalactiae 18RS21] gi|76584832|gb|EAO61529.1| GTP-binding protein Era [Streptococcus agalactiae 18RS21] Length = 242 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 134/240 (55%), Gaps = 3/240 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ ++ L L + DQI+D Sbjct: 124 DKVHPDQLLEQIDDFRSQMDFKEVVPISALQGNNVPTLIKLLTDNLEEGFQYFPEDQITD 183 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQKKI 258 P +E+ REK+ +E+P+S VV E K +E+ D + IR I VER SQK I Sbjct: 184 HPERFLVSEMVREKVLHLTQQEVPHSVAVVVESMKRDEETD-KVHIRATIMVERDSQKGI 242 >gi|229817680|ref|ZP_04447962.1| hypothetical protein BIFANG_02951 [Bifidobacterium angulatum DSM 20098] gi|229785469|gb|EEP21583.1| hypothetical protein BIFANG_02951 [Bifidobacterium angulatum DSM 20098] Length = 334 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTLVN +G +++I + + +TTR +RG+++ +Q+V +DTPGI Sbjct: 25 RSGFVAVVGRPNVGKSTLVNALIGTQIAIASSRPETTRKAIRGVLTTDNAQLVLVDTPGI 84 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSS---- 131 + + + + ++ D+V ++ +E+ ++ + KR Sbjct: 85 HRPRTLLGQRLNDIVDESLSDVDVVAFLLPGDQEIGPGDKRIMSRLRANFATKREDGTFK 144 Query: 132 ---RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + E+L+ + N+ VSA K D+V + L P Sbjct: 145 WHVPLIAIVTKIDELSREQLIAKLIEVNEFADFADIVPVSALKHDNLDEVRSVLIDHTPE 204 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--------EKKDG 240 P +Y A+Q+S+ AE+ R L+ E+P+S VV + + + DG Sbjct: 205 GPQMYPAEQLSEERPEETIAELIRGAFLEQLNDELPHSLAVVVDSIDYPEDNETGAQYDG 264 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++GK N+ + + + + I+ + L L VKV K W Sbjct: 265 KAQVNVSIYVERDSQKPIIIGKGAANLTAVKKKLRTAVNRIVGRKARLDLHVKVAKGWQS 324 Query: 301 DPK 303 DPK Sbjct: 325 DPK 327 >gi|322380637|ref|ZP_08054789.1| GTP-binding protein Era [Helicobacter suis HS5] gi|321146959|gb|EFX41707.1| GTP-binding protein Era [Helicobacter suis HS5] Length = 311 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 152/289 (52%), Gaps = 13/289 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV----SEKESQIVFL 75 S++G +AL+G NAGKSTL+N V ++ +++HK TR I++ IV + E Q+VFL Sbjct: 17 SKAGFIALIGRPNAGKSTLINALVYERLCLISHKANATRKILKAIVPYMQGDIECQMVFL 76 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPGI ++ MI+ ++ D+ + H + + L + IL Sbjct: 77 DTPGICKPTKLLNQAMIKQIRHALESCDLAIFLASIHDSPE-KYQEFLNLTPNKPH--IL 133 Query: 136 ILNKIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 LNK D P ++L A+I V+ +SA K H + +L + LP +P+ Sbjct: 134 ALNKTDTATPTKIL--AQIKAYQVYSAHFGALIPLSAAKRHHLEILLEEVAKLLPESPFY 191 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y +SD+ E+ RE++F L +EIPY+S V+ + EE K + ++I VE+ Sbjct: 192 YDPKLLSDIQTKEIYKEMIREQIFRFLSEEIPYASDVLIMRIEEGKTRDFIDARII-VEK 250 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQ+++++GK G +K I EA+ +I E+ V L L V VQK+W + Sbjct: 251 ESQQRMVIGKGGSVVKKIGREARLQIEAFSEKKVFLQLEVLVQKNWTQE 299 >gi|284929634|ref|YP_003422156.1| GTP-binding protein Era [cyanobacterium UCYN-A] gi|284810078|gb|ADB95775.1| GTP-binding protein Era [cyanobacterium UCYN-A] Length = 314 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 92/291 (31%), Positives = 151/291 (51%), Gaps = 12/291 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG + ++G N GKST++N+ +G K+ I ++ QTTR+ ++GI++ Q++F+DTPGI Sbjct: 21 RSGFIGIIGRPNVGKSTIMNQLIGQKIVITSNVSQTTRNRLKGILTTDTEQMIFVDTPGI 80 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K++++ + TI DI+ LVVDS H ++ + +I+ LNK Sbjct: 81 HKPHHNLGKIIVKNAKITINSVDIILLVVDSSTLSGGGDHYIINLLKNTDKTVIVGLNKS 140 Query: 141 D--CVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D VK E L A+ L I++ SA G ++ N L L P+ Y Sbjct: 141 DKQTVKHEEL-----DASYLNLIKEYKWPIVKFSALTKEGLGNLQNLLIKNLDYGPYYYH 195 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 +D P E+ RE++ +EIP+S ++ EK EE + I I VE+ S Sbjct: 196 PSLATDQPEKFIIQELIREQVLHLTRQEIPHSVAIIVEKIEETPTVT-KIFAAINVEKNS 254 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G G +K I +++ +I +++ V+L LFVKV+ +W C Sbjct: 255 QKGIVIGSKGNMLKLIGTQSRIQIQKLIAGEVYLKLFVKVESNWRFSDGCL 305 >gi|332977455|gb|EGK14230.1| GTP-binding protein Era [Psychrobacter sp. 1501(2011)] Length = 338 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 99/312 (31%), Positives = 164/312 (52%), Gaps = 16/312 (5%) Query: 7 TFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 +FFNE + ++ R+G VA+VG N GKSTL+N +G K+SI + K QTTR + GI+S Sbjct: 25 SFFNEES--LPEDYRAGYVAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGILS 82 Query: 67 EKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 E Q VF+DTPGI N ++ M + ++S + D+V VVD + + ++ L K Sbjct: 83 NSEMQAVFVDTPGIHSNEVRLINERMNKAAFSALVDVDLVLFVVDGEQWREDDLLTLEK- 141 Query: 126 IAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 I + + ++L++NK D +K + +L E ++ VSA K + + + S Sbjct: 142 IGETDTPVVLVINKADTIKDKGSILPLIETYHENFEFADIVPVSALKNQNLERLEQVIRS 201 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-------- 236 LP +Y +QI+D +EI REK+ E+PY V +++++ Sbjct: 202 HLPQGAPIYDTEQITDRSERFLASEIIREKIMRQSGDEVPYDLTVQIDEFKDEPAHIDPK 261 Query: 237 ---KKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 K+ I I+VER QK I++G G IK I + A++++ + E+ + L L+VK Sbjct: 262 TGRKRKAVTFIDATIFVERNGQKAIIIGDKGSRIKQIGMAAREDMEALFERKIMLNLWVK 321 Query: 294 VQKDWGHDPKCC 305 V++ W D + Sbjct: 322 VKQGWSDDARAL 333 >gi|309801224|ref|ZP_07695353.1| ribosome biogenesis GTPase Era [Bifidobacterium dentium JCVIHMP022] gi|308222113|gb|EFO78396.1| ribosome biogenesis GTPase Era [Bifidobacterium dentium JCVIHMP022] Length = 327 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 147/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ +QIV +DTPGI Sbjct: 18 RSGFVAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGI 77 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSS---- 131 + + + + ++ D + ++ +E+ +L + AKR Sbjct: 78 HRPRTLLGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDKRILSRLRSEFAAKRDDGTFK 137 Query: 132 ---RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + E L+ + N+ VSA K +V N L +P Sbjct: 138 WKVPLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHDNLSEVRNVLVENMPE 197 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK--------DG 240 P +Y A+QI++ AE+ R L E+P+S VV + E + DG Sbjct: 198 GPQMYPAEQITEERPEDTIAELVRGAFLEELDDELPHSLAVVVDSIEYPEDNESGMAYDG 257 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++GK +++ + + + + I+ Q L L VKV K W Sbjct: 258 KAQVIVSIYVERDSQKPIIIGKGAEHLVRVKKKLRTPVNRIVGQKARLDLHVKVAKGWQS 317 Query: 301 DPK 303 DPK Sbjct: 318 DPK 320 >gi|148549493|ref|YP_001269595.1| GTP-binding protein Era [Pseudomonas putida F1] gi|325275443|ref|ZP_08141374.1| GTPase Era [Pseudomonas sp. TJI-51] gi|189037660|sp|A5W8F1|ERA_PSEP1 RecName: Full=GTPase Era gi|148513551|gb|ABQ80411.1| GTP-binding protein Era [Pseudomonas putida F1] gi|313500338|gb|ADR61704.1| Era [Pseudomonas putida BIRD-1] gi|324099419|gb|EGB97334.1| GTPase Era [Pseudomonas sp. TJI-51] Length = 300 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 161/294 (54%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E + Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGDVQAIYVDTPG 66 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + A D + ++ M R + + +K D+V VVD + + +L+ + + LI+ +N Sbjct: 67 MHKANDKALNRYMNRNASAALKDVDVVIFVVDRTKWTDED-QLVLERVQYVTGPLIIAVN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ E+AE+ L ++++ +SA +GH + + + LP Sbjct: 126 KTD-----RMEEKAELIPHLQWLQEQLPNAEVMPISAQQGHNLEALEAQIAKHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G +L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGHVLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G+ IK I EA+K++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGERIKRIGSEARKDMEVLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|304413541|ref|ZP_07395014.1| GTP-binding protein [Candidatus Regiella insecticola LSR1] gi|304284384|gb|EFL92777.1| GTP-binding protein [Candidatus Regiella insecticola LSR1] Length = 310 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 155/295 (52%), Gaps = 16/295 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKSTL+N +G KVSI + K QTTR + GI +E Q +++DTPG+ Sbjct: 10 GFVAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRIMGIHTEGAYQTIYIDTPGLHI 69 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + ++LM R + S I +++ VV+ + + ++ +++ + ++L++NK+D Sbjct: 70 EEKRAINRLMNRAASSAIGDVELIIFVVEGTHWI-ADDEMVMNKLSHVNCPVLLVINKMD 128 Query: 142 CVKPE-RLLEQAE-IANKLVFI----------EKTFMVSATKGHGCDDVLNYLCSTLPLA 189 V + +LL + + K+ FI EK V K D + + + +P A Sbjct: 129 NVTDKAKLLPHIDFLRKKINFIGILPVIAEVSEKKQQVQERKN--LDTIADIVRKHMPKA 186 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 + D I+D +EI REKL L +E+PYS V E + + I +I Sbjct: 187 EHHFPEDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIEHFTTNERQGYDINGLIL 246 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 VER QKKI++G G IK I EA+KE+ ++ VHL L+VKV+ W D + Sbjct: 247 VEREGQKKIVIGDKGAKIKEIGTEARKEMEKMFACKVHLELWVKVKSGWADDERA 301 >gi|306822848|ref|ZP_07456224.1| GTP-binding protein Era [Bifidobacterium dentium ATCC 27679] gi|304553480|gb|EFM41391.1| GTP-binding protein Era [Bifidobacterium dentium ATCC 27679] Length = 333 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 147/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ +QIV +DTPGI Sbjct: 24 RSGFVAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGI 83 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSS---- 131 + + + + ++ D + ++ +E+ +L + AKR Sbjct: 84 HRPRTLLGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDKRILSRLRSEFAAKRDDGTFK 143 Query: 132 ---RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + E L+ + N+ VSA K +V N L +P Sbjct: 144 WKVPLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHDNLSEVRNVLVENMPE 203 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK--------DG 240 P +Y A+QI++ AE+ R L E+P+S VV + E + DG Sbjct: 204 GPQMYPAEQITEERPEDTIAELVRGAFLEELDDELPHSLAVVVDSIEYPEDNESGMAYDG 263 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++GK +++ + + + + I+ Q L L VKV K W Sbjct: 264 KAQVIVSIYVERDSQKPIIIGKGAEHLVRVKKKLRTPVNRIVGQKARLDLHVKVAKGWQS 323 Query: 301 DPK 303 DPK Sbjct: 324 DPK 326 >gi|194246696|ref|YP_002004335.1| GTP-binding protein Era [Candidatus Phytoplasma mali] gi|193807053|emb|CAP18489.1| Glycyl-tRNA synthetase [Candidatus Phytoplasma mali] Length = 293 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 3/282 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + ++G N GKSTL+N V K+SIV+ K T + + G+ ++ +SQ+VF+DTPG Sbjct: 4 KSGFITILGRPNVGKSTLINVLVKQKISIVSDKPNVTINKIIGVCNDIDSQLVFIDTPGF 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N K K M S +I D++ ++ L + +L I K +I+++NKI Sbjct: 64 NNRKFLLSKRMDESSLKSIYGVDVILFLITDI--LNSSEKKILSNIQKHKKPIIIVINKI 121 Query: 141 DCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D K + +++ + F + +SA + N + S L P Y +D ++ Sbjct: 122 DNFKNKSQIDKIILDCLKYFKFDDIIPISAINSQNLLPLKNSILSYLKEGPKYYPSDMVT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D AE+ REK+F + +EIPYS + E+ D I + +I +E+ SQKKI+ Sbjct: 182 DQKKDRLIAELVREKIFFYCRQEIPYSVGTMVERMNYINDDFIEVWVLILIEKLSQKKIL 241 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G G+ +K +S+ KEI IL V L L++K + W + Sbjct: 242 IGSKGEKLKQVSINTAKEIQNILNIKVRLNLWIKTKPKWREN 283 >gi|171743043|ref|ZP_02918850.1| hypothetical protein BIFDEN_02168 [Bifidobacterium dentium ATCC 27678] gi|283455946|ref|YP_003360510.1| GTP-binding protein Era [Bifidobacterium dentium Bd1] gi|171278657|gb|EDT46318.1| hypothetical protein BIFDEN_02168 [Bifidobacterium dentium ATCC 27678] gi|283102580|gb|ADB09686.1| GTP-binding protein Era [Bifidobacterium dentium Bd1] Length = 333 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 147/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ +QIV +DTPGI Sbjct: 24 RSGFVAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGI 83 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSS---- 131 + + + + ++ D + ++ +E+ +L + AKR Sbjct: 84 HRPRTLLGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDKRILSRLRSEFAAKRDDGTFK 143 Query: 132 ---RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + E L+ + N+ VSA K +V N L +P Sbjct: 144 WKVPLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHDNLSEVRNVLVENMPE 203 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK--------DG 240 P +Y A+QI++ AE+ R L E+P+S VV + E + DG Sbjct: 204 GPQMYPAEQITEERPEDTIAELVRGAFLEELDDELPHSLAVVVDSIEYPEDNESGMAYDG 263 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++GK +++ + + + + I+ Q L L VKV K W Sbjct: 264 KAQVIVSIYVERDSQKPIIIGKGAEHLVRVKKKLRTPVNRIVGQKARLDLHVKVAKGWQS 323 Query: 301 DPK 303 DPK Sbjct: 324 DPK 326 >gi|269215936|ref|ZP_06159790.1| GTP-binding protein Era [Slackia exigua ATCC 700122] gi|269130195|gb|EEZ61273.1| GTP-binding protein Era [Slackia exigua ATCC 700122] Length = 351 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 153/289 (52%), Gaps = 2/289 (0%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 F+ + +SG V LVG N GKS+L+N VG KV+I + QTTR R I++ ++Q+V Sbjct: 50 FMSNQFKSGFVTLVGRPNVGKSSLINAVVGHKVAITSSTAQTTRHRFRAILTTDDAQVVM 109 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRL 133 +DTPG+ D+ + + + ++ D+V VVD+ + + ++ A ++ R Sbjct: 110 VDTPGLHKPHDALGEELNTSAIMALEDVDVVAFVVDASQPFGRGDEWVANQVRAAKAPRK 169 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 IL+L+K D V + + +Q A L + ++SA G D + + + LP P + Sbjct: 170 ILVLSKADLVDAQIVEDQLNAARALDSWDDEIVLSAKTGFNVDGFVQAVIAALPAGPKWF 229 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 D +D P AE REK+ E+P+S VV + E + + I ++VER Sbjct: 230 PDDMDTDQPFEVIVAEFIREKILRSYRDEVPHSIGVVADDLEYDRAKDMYRIYATVFVER 289 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQK I++GK G IK + +EA+ ++ ++L V L L VKV+K+W D Sbjct: 290 DSQKGIIIGKGGAAIKRVGIEARLDLEQMLGCKVFLDLQVKVKKNWRRD 338 >gi|330898516|gb|EGH29935.1| GTPase Era [Pseudomonas syringae pv. japonica str. M301072PT] Length = 300 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V V+D R + +L+ + IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVLDRTRWTDED-QMVLERVQYVQGPGILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G IK I +A++++ + + V L L+ KV+ W D + Sbjct: 239 RDGQKKIIIGDKGDRIKRIGSDARRDMELLFDSKVMLNLWGKVKGGWSDDERAL 292 >gi|329120636|ref|ZP_08249299.1| GTP-binding protein Era [Neisseria bacilliformis ATCC BAA-1200] gi|327460860|gb|EGF07194.1| GTP-binding protein Era [Neisseria bacilliformis ATCC BAA-1200] Length = 352 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 103/320 (32%), Positives = 162/320 (50%), Gaps = 43/320 (13%) Query: 8 FFNEHKDFVQD--------NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS 59 FF +D+V D R G +A+VG N GKSTL+N +G KVSI + K QTTR+ Sbjct: 41 FFRRPQDYVMDEFTQTAPAGYRCGFIAIVGRPNVGKSTLMNHLIGQKVSITSKKAQTTRN 100 Query: 60 IVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELK 116 V GI ++ +Q VF+DTPG D + L RL+ + + D V VV++ R + Sbjct: 101 RVTGIYTDDTAQFVFVDTPGF--QTDHRNALNDRLNQNVTEALSGVDAVVFVVEAMRFTE 158 Query: 117 VNIHDLLKEIAKRSSRLILILNK---------------IDCVKPERLLEQAEIANKLVFI 161 + ++K++ K + +IL++NK ID ++ E E+ Sbjct: 159 AD-RTVMKQLPKHTP-VILVVNKIDKDKAKDKTALQAFIDGIRAEFKFAACEV------- 209 Query: 162 EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHK 221 VSA G ++L L LP +Y D ++D EI REKLF +L + Sbjct: 210 -----VSAKHGLRIANLLETLKPFLPEGIPLYPDDMVTDKSARFLAMEIVREKLFRYLGE 264 Query: 222 EIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEI 281 E+PY+ V EK++E +G I + V++ +QK I++GK G+ +K IS EA+ ++ ++ Sbjct: 265 ELPYAMNVEVEKFDE-GEGIHHIYIAVLVDKENQKPIVIGKGGEKLKKISTEARLDMEKL 323 Query: 282 LEQPVHLILFVKVQKDWGHD 301 V L ++VKV+ W D Sbjct: 324 FGCKVFLKVWVKVKSGWADD 343 >gi|282900463|ref|ZP_06308412.1| Small GTP-binding protein [Cylindrospermopsis raciborskii CS-505] gi|281194656|gb|EFA69604.1| Small GTP-binding protein [Cylindrospermopsis raciborskii CS-505] Length = 308 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 154/285 (54%), Gaps = 6/285 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +SG + ++G N GKSTL+N+ +G K++I + QTTR+ +RGI++ +++Q++F+DTP Sbjct: 13 NFKSGFIGIIGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTREKAQLIFVDTP 72 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI +++++ + I D+V VVD ++ + K +I+ +N Sbjct: 73 GIHKPHHPLGEVLVQNAKIAITSVDVVLFVVDGTAVCGGGDRFIVDLLTKCEIPVIMGIN 132 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYSA 195 KID E E+ + + + + E + + SA + G ++ L L P Y Sbjct: 133 KIDQQPAE--AEKIDESYRELARENQWQIVKFSALENQGILELEELLIEQLETGPLYYPP 190 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D ++D P E+ RE++ L +E+P+S + + EE + ++ I VER SQ Sbjct: 191 DLVTDQPERFIMGELIREQILLLTREEVPHSVAIAIDLVEENPTITRVV-ATINVERDSQ 249 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 K I++GK G +K+I A+++I +++ VHL LFVKVQ W H Sbjct: 250 KGILIGKGGTMLKSIGTVARQQIQKLIAGKVHLELFVKVQPKWRH 294 >gi|251772615|gb|EES53180.1| GTP-binding protein (Era) [Leptospirillum ferrodiazotrophum] Length = 335 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 100/298 (33%), Positives = 154/298 (51%), Gaps = 14/298 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R+G VA+VG NAGKSTLVN VG KVS V+ QTTR+++RGI +E+ Q +FLDTP Sbjct: 28 SGRAGLVAVVGLPNAGKSTLVNALVGEKVSAVSATPQTTRTLIRGIRTEERGQAIFLDTP 87 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAK----RS 130 G + ++ M + + A +V VVD + + DL++ + + Sbjct: 88 GFHQSGPLLNQQMGERLSAALAEAHVVLWVVDITSKKRDRDFARFLDLIRAPRRGEGGAN 147 Query: 131 SRLILILNKIDCVKP----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 LI+ L KID + P LLE + + + + +S KG D + + L L Sbjct: 148 PPLIVALTKIDRLGPTNMIPSLLEFSREMERHHIVGEIVPLSGLKGANLDPLCDLLFQAL 207 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK--DGSILI 244 P ++ + + M EI +EK+F L++E+P+ V E++ E + + I Sbjct: 208 PEGEPLFDPEWFTSQTMREMVREIVQEKIFSLLYEEVPHQCAVAVEEFLEPGPDEKATRI 267 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 I VER SQK I++G G+ I+TIS A++EI + PV+L L V+V DW P Sbjct: 268 EGSILVERDSQKGIVVGARGETIRTISQRAREEIERLTGTPVYLRLVVRVVPDWRDRP 325 >gi|34497522|ref|NP_901737.1| GTP-binding protein Era [Chromobacterium violaceum ATCC 12472] gi|81711814|sp|Q7NWC3|ERA_CHRVO RecName: Full=GTPase Era gi|34103377|gb|AAQ59739.1| GTP-binding protein [Chromobacterium violaceum ATCC 12472] Length = 296 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 161/288 (55%), Gaps = 19/288 (6%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VG N GKSTL+N +G K+SI + K QTTR V GI +E +Q VF+DTPG Sbjct: 9 GFVAIVGRPNVGKSTLMNHLIGQKISITSKKSQTTRHRVTGIHTEDAAQFVFVDTPGF-- 66 Query: 83 AKDSYHKLMIRLSWS-----TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 +YHK + + + ++ D V ++++ R + +++ + K++ +IL++ Sbjct: 67 --QTYHKGALNEALNKSVKDSLGSVDCVLFLLEAMRFTAAD-REVMALLPKKTP-VILVV 122 Query: 138 NKIDCVKPERLLEQA---EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 NK+D K ++L QA E+ + F +VSA G ++L+ + LP + +Y Sbjct: 123 NKLDKAK-DKLTLQAFIDEVTAEFEFA-GVEVVSAKHGQRLAELLDQVRPHLPESMPLYP 180 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERP 253 D I+D AEI REKLF +L +E+PY V E +E DG++ I + V++ Sbjct: 181 EDMITDKNERFLAAEIVREKLFRYLGEELPYEMNVEVEMFE--MDGALRRIHIAVLVDKE 238 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 QK I++G+ G+ +K IS EA+ ++ ++ + V L ++VKV+ W D Sbjct: 239 HQKPIVIGRGGEKLKKISTEARLDMEKLFDGKVFLQVWVKVKSGWADD 286 >gi|299067032|emb|CBJ38227.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum CMR15] Length = 315 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 24/299 (8%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + R G VA+VG N GKSTL+N VG KVSI + K QTTR + GI + ++Q VF+ Sbjct: 18 VPEGFRCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFV 77 Query: 76 DTPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 DTPG F + + ++ + R ST+ D V VV++ R + L + R + + Sbjct: 78 DTPG-FQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVL--SLLPRETPV 134 Query: 134 ILILNKIDCVKPERLLEQA-----EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ILI+NK+D + E E+A F E M + + DD+L L P Sbjct: 135 ILIVNKVDRLDAYTRAEMVAVFLQEMAQVFPFKEIVPMSAKNR----DDILRLLGIVRPY 190 Query: 189 APW---VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 P +Y + ++D AEI REK+F E+PYSS VV +K+E + +R Sbjct: 191 LPEGEPMYDPEALTDRSERFMAAEIVREKVFRWTGDELPYSSTVVVDKFETEGR----LR 246 Query: 246 QV---IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +V I V+R + K +++G G +K IS EA+ ++ ++ + V+L +++KV+ W + Sbjct: 247 RVFVTILVDRDAHKAMIIGAKGAKLKQISTEARMDMEKLFDGKVYLEVWIKVKSGWADN 305 >gi|258651808|ref|YP_003200964.1| GTP-binding protein Era [Nakamurella multipartita DSM 44233] gi|258555033|gb|ACV77975.1| GTP-binding protein Era [Nakamurella multipartita DSM 44233] Length = 272 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 6/263 (2%) Query: 47 VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVC 106 ++I + K QTTR VRGI++ ++Q+V +DTPG+ + + + L S D+V Sbjct: 1 MAITSDKPQTTRRAVRGILTRPDAQLVIVDTPGMHRPRTLLGERLDDLVRSVWSDVDVVG 60 Query: 107 LVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKT 164 + + + + E+A+R S+ +I I+ KID V ERL EQ A++L Sbjct: 61 FCIPADERVGPGDRRIAAELAERAGSTPVIGIVTKIDKVSRERLAEQLLGASELAGFADI 120 Query: 165 FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIP 224 VSA G G D + + L + LP P +Y + +D P+ AE+ RE + E+P Sbjct: 121 VPVSAVSGEGTDTLTDLLVARLPEGPMLYPDAESTDEPIETRIAELVREAALDGVRDELP 180 Query: 225 YS-SCVVTEKWEEKKDGSILIRQV---IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAE 280 +S + +VTE D + + +V ++VER SQK I+LG G + + A+ +I E Sbjct: 181 HSLAAMVTEMLPPDPDAAKQVTKVYVTLFVERSSQKPIVLGPKGSRLGAVGRRARLQIEE 240 Query: 281 ILEQPVHLILFVKVQKDWGHDPK 303 +L V+L L V V KDW DPK Sbjct: 241 LLGTRVYLDLHVAVAKDWQRDPK 263 >gi|124265844|ref|YP_001019848.1| putative GTP-binding protein [Methylibium petroleiphilum PM1] gi|124258619|gb|ABM93613.1| putative GTP-binding protein [Methylibium petroleiphilum PM1] Length = 312 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 153/293 (52%), Gaps = 21/293 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VG KVSI + K QTTR + GI S +Q VF+DTPG Sbjct: 19 RCGLVAIVGRPNVGKSTLLNALVGQKVSITSRKAQTTRHRITGIRSADAAQFVFVDTPGF 78 Query: 81 -----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 + ++ + + S + D+V VV++ R ++ +L + L L Sbjct: 79 QTRHTVKGAGALNRNLNKTVQSVMGDVDVVLFVVEAGR-FGLDDAKVLSLVPPGKPTL-L 136 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNYLCSTLPLA 189 + NK+D V+ +AE+A L +++ ++AT +L + LP Sbjct: 137 VANKLDLVR-----RRAELAPWLKSMQERHPFAEFVPLAATSPDDVRRLLQIVQPYLPEQ 191 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVI 248 PW Y + ++D +EI REKLF E+PY+S VV ++++E +G++ I I Sbjct: 192 PWFYDEEALTDRSERFLASEIIREKLFRLTGDELPYTSTVVIDEFKE--EGALRRIAATI 249 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER + K +++G G+ +K I +A+ E+ +++ V L ++VKV+ W D Sbjct: 250 IVEREAHKGMVIGDKGERLKRIGTDARVELERLMDGKVFLEIWVKVRSGWADD 302 >gi|330502446|ref|YP_004379315.1| GTP-binding protein Era [Pseudomonas mendocina NK-01] gi|328916732|gb|AEB57563.1| GTP-binding protein Era [Pseudomonas mendocina NK-01] Length = 299 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 160/293 (54%), Gaps = 16/293 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E E Q V++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGEVQAVYVDTPG 66 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + D + ++ M R + + +K D+V VVD R + +L+++ ++L +N Sbjct: 67 LHKHNDKALNRYMNRSASTALKDVDVVVFVVDRMRWTDED-QLVLEKVQHVKCPILLAVN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D RL +++E+ L ++ + +SA +G D + + LP + Sbjct: 126 KAD-----RLEDKSELLPHLNWLAEQLPQAEIVPISALQGQNLDTLEKLVGERLPESEHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 Y DQI+D AE+ REK+ L E+PY V E++ K++G IL I +I VE Sbjct: 181 YPEDQITDRSSRFLAAELIREKIMRQLGAELPYQITVEIEEF--KQEGRILHIHGLILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 R QKKI++G G+ IK I EA+K++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGERIKRIGQEARKDMETMFDSKVMLNLWVKVKGGWSDDERA 291 >gi|303232238|ref|ZP_07318937.1| GTP-binding protein Era [Atopobium vaginae PB189-T1-4] gi|302481648|gb|EFL44709.1| GTP-binding protein Era [Atopobium vaginae PB189-T1-4] Length = 306 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 152/294 (51%), Gaps = 10/294 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 +H+ F +SG VALVG + GKSTL+N G K++I + QTTR +R +++ S Sbjct: 8 QHEGF-----KSGFVALVGRPSVGKSTLLNACYGGKIAITSKVAQTTRKRLRAVITSDTS 62 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKR 129 QI+ +DTPG+ +D+ K + + + + ++V L+VD+ + + K + A Sbjct: 63 QIILVDTPGLHKPQDALGKTLNQTALLELNDVEVVALLVDATAPIGRGDMWVAKHVHASS 122 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ++ IL+L K D ++ Q E ++ L + T +V AT+ G + L+ + LP Sbjct: 123 AAYKILVLTKADKATQAQVKAQLEASSMLGSFDDTLVVCATQQFGVSEFLHRIEDHLPEG 182 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--WEEKKDGSILIRQV 247 P + D D +E REK+ H EIP+S V + W KK S IR Sbjct: 183 PHWFFDDMDVDATDEELMSEFIREKILNLTHDEIPHSVAVHIDDVVWRSKKLCS--IRAT 240 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I VER QK I++GK IK I ++A+++I +++ V L L V+V W +D Sbjct: 241 IMVERAGQKAIIIGKKATLIKEIGMQARRDIEKLVGAQVFLDLVVRVYPKWRND 294 >gi|17545783|ref|NP_519185.1| GTP-binding protein Era [Ralstonia solanacearum GMI1000] gi|21263578|sp|Q8Y0I0|ERA_RALSO RecName: Full=GTPase Era gi|17428077|emb|CAD14766.1| probable gtp-binding protein era homolog [Ralstonia solanacearum GMI1000] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 154/294 (52%), Gaps = 24/294 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VG KVSI + K QTTR + GI + ++Q VF+DTPG Sbjct: 6 RCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPG- 64 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + + ++ + R ST+ D V VV++ R + L + R + +ILI+N Sbjct: 65 FQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVL--SLLPRETPVILIVN 122 Query: 139 KIDCVKPERLLEQA-----EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-- 191 K+D + E E+A F E M + + DD+L L P P Sbjct: 123 KVDRLDAYTRAEMVAVFLQEMAQVFPFKEIVPMSAKNR----DDILRLLGIVRPYLPEGE 178 Query: 192 -VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV--- 247 +Y + ++D AEI REK+F E+PYSS VV +K+E + +R+V Sbjct: 179 PMYDPEALTDRSERFLAAEIVREKVFRWTGDELPYSSTVVVDKFETEGR----LRRVFVT 234 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I V+R + K +++G G +K IS EA+ ++ ++ + V+L ++VKV+ W + Sbjct: 235 ILVDRDAHKAMIIGAKGAKLKQISTEARMDMEKLFDGKVYLEVWVKVKSGWADN 288 >gi|257459461|ref|ZP_05624570.1| GTP-binding protein Era [Campylobacter gracilis RM3268] gi|257442886|gb|EEV18020.1| GTP-binding protein Era [Campylobacter gracilis RM3268] Length = 309 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 150/294 (51%), Gaps = 21/294 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++N +SG V L+G TNAGKS+L+N G K+S+V+HK+ TR + GI Q++F D Sbjct: 18 KENMKSGFVTLIGRTNAGKSSLLNYLCGEKISLVSHKINATRRKINGIAMNGTDQVIFTD 77 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK-----VNIHDLLKEIAKRSS 131 TPG+ + +KLM+ ++ I+ D+V + H + +N++ +K Sbjct: 78 TPGLHESAKLMNKLMVEVALGAIEGCDLVLFLAPVHDDTAEYEKFLNLNAGIKH------ 131 Query: 132 RLILILNKIDCVKPE----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 I+IL KID V E +LL+ + +K E VS K VL+ +C LP Sbjct: 132 --IVILTKIDEVNDEKIVQKLLQYQKFTDKF---EAIIPVSIKKKVYKKQVLDEICKILP 186 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 + Y + +S + E +F + EIPY S VV EK EK G + Sbjct: 187 EHEYFYDPEILSATNEREIYRDFILEAIFESMSDEIPYCSDVVMEKVVEKP-GLTSVYAR 245 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I + S K++++GKNG+ IK I + AKK I+ + ++L L V V+K W +D Sbjct: 246 IITDSNSHKEMLIGKNGEAIKRIGIRAKKLISNFSKVKIYLKLTVFVKKSWKND 299 >gi|300311261|ref|YP_003775353.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1] gi|300074046|gb|ADJ63445.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 160/288 (55%), Gaps = 15/288 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VGAKVSI + K QTTR + GI + + +Q V++DTPG Sbjct: 20 RCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPG- 78 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILI 136 F + ++ +K + R +T+ AD++ V+++ + DLL + IL+ Sbjct: 79 FQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLLPA----NVPCILV 134 Query: 137 LNKIDCVKPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 LNK D K + L E+A+ F VSA + D + + LP P ++ Sbjct: 135 LNKADRNKDKTTLMPFAREVASHHDFA-AVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFD 193 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERP 253 D I+D +EI REK+F + +E+PY+S V+ EK+E+ +G++ I I VER Sbjct: 194 EDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQ--EGNLRRIFAAILVERD 251 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + K +++G+ G +K IS ++++++ + PV+L ++VKV+ W + Sbjct: 252 NHKAMVIGQKGARLKEISTQSRQDMERLFGGPVYLEIWVKVKSGWADN 299 >gi|300933265|ref|ZP_07148521.1| GTP-binding protein Era [Corynebacterium resistens DSM 45100] Length = 321 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/288 (31%), Positives = 152/288 (52%), Gaps = 6/288 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RG++ +SQIV +DTPG+ Sbjct: 28 RSGFVSFVGRPNTGKSTLTNALVGQKIAITADQPETTRHPIRGVIHRDDSQIVVVDTPGL 87 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T + D++ + V + ++ I D ++++A ++ LI ++ Sbjct: 88 HRPRTLLGERLNEIVKDTYQDVDLIAVCVPADEKIGPGDRWIVDAVRKVAPKTE-LIGVV 146 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V +++ EQ + L+ + VSAT+ D + + + LP P Y D Sbjct: 147 TKVDKVGKDKVGEQLLALHDLLEGAEVIPVSATEKIQLDVLADVIADHLPEGPKFYPDDH 206 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--GSILIRQVIYVERPSQ 255 ++D AE+ RE L E+P+S V ++ D G + + +IYVER Q Sbjct: 207 VTDDDRDTRMAELIREAALAGLQDELPHSVAVQIDEVAPSADREGVLDVHAIIYVEREGQ 266 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K I+ GK G+ + A+ +I E+L Q V+L + +KV K+W DPK Sbjct: 267 KAILRGKGGRRLSRTVHNARLQIIEMLGQNVYLDIRLKVAKNWQSDPK 314 >gi|262038068|ref|ZP_06011473.1| GTP-binding protein Era [Leptotrichia goodfellowii F0264] gi|261747888|gb|EEY35322.1| GTP-binding protein Era [Leptotrichia goodfellowii F0264] Length = 304 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 152/285 (53%), Gaps = 36/285 (12%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +A+VG N GKSTL+N+ V KV+IV+ K TTR ++GIV+ E+Q +F+DTPGI Sbjct: 9 KSGFIAIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGENQYIFVDTPGI 68 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M ++ T+ + D++ ++D +E+ + + I + + +I+++NKI Sbjct: 69 HKPKHLLGEHMTEIALETLSNVDLIMFMLDGTKEISTGDIFVNEHIRETKTPVIVVINKI 128 Query: 141 DCVK-----------PERLLEQAEI----ANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 D + E+L E A+I A + + K F V+ YL S Sbjct: 129 DKMSNEEIEEKKTEIKEKLGEFADIITLTAEYAIGVHKIFEVAE----------KYLSSD 178 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 + W Y D +DLP+ E REK+ + EIP+S V E KKD IR Sbjct: 179 V----WFYPEDYYTDLPVNKIVVETVREKILHNTKDEIPHSVAVEITDVETKKD----IR 230 Query: 246 QV---IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVH 287 + IYVER SQK I++GK+G +K I +EA+KEI +++ V+ Sbjct: 231 KYEVNIYVERDSQKGIIIGKDGALLKKIGIEARKEIEALIDLKVN 275 >gi|167586634|ref|ZP_02379022.1| GTP-binding protein Era [Burkholderia ubonensis Bu] Length = 299 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 151/285 (52%), Gaps = 9/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + +++Q +F+DTPG Sbjct: 10 RCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQFIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + S ++ + R ST+ D + V+++ R + +L I L LI N Sbjct: 69 FQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPPGVPTL-LIAN 126 Query: 139 KIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D V + L + + L + +SA ++ + LP +Y D Sbjct: 127 KLDRVNDKTTLYPFMQKVSALREFTEIVPLSAKHVEDIQRLMETVKPYLPEGEPIYGEDD 186 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+EE +G + + I VER S K Sbjct: 187 LTDRSSRFLAAEILREKVFRWTGDELPYTSTVIIDKFEE--EGRLKRVFATILVERDSHK 244 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K IS EA+ ++ ++ + PV+L FVKV+ W + Sbjct: 245 AMVIGKKGAKLKQISTEARMDMEKLFDGPVYLETFVKVKSGWADN 289 >gi|325181428|emb|CCA15844.1| conserved hypothetical protein [Albugo laibachii Nc14] gi|325193041|emb|CCA27412.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 458 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 161/308 (52%), Gaps = 33/308 (10%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 NS++ VA++G NAGKS+++N + + VS V+ K TTR V G+++EK +QI F DTP Sbjct: 149 NSKALEVAVIGRPNAGKSSIINFLLRSNVSAVSQKYNTTRERVLGVLTEKNTQITFHDTP 208 Query: 79 GIFNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI----AKRSSR 132 G+ ++S Y + ++ + T++ D+ LVVD+ + L + +++I A+ + Sbjct: 209 GLIKPQESHLYVRSLVTTAADTVESVDLSLLVVDAVKRLDDSALQAMEKILIGSAQVGAP 268 Query: 133 LILILNKIDCVKPERLLEQAEIA-------------------NKLVF---IEKT----FM 166 +L++NK D V+ ER L+ +I +++F E T F Sbjct: 269 TMLVMNKYDLVR-ERDLKSVDIRIGVLSTMIEEIYQKHRDSDAEMLFANTAENTGPGCFK 327 Query: 167 VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYS 226 SA +G G + + L PW + + S EI R +LF ++E+PY+ Sbjct: 328 TSALQGRGIRKLRSRLIGHAVERPWNFHSSVKSTHSDLDMVTEIIRAQLFTRYNQELPYN 387 Query: 227 SCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPV 286 W KDGSI I Q I+V + +I++G+NG I+ + ++A+ EI ++LE+ V Sbjct: 388 MQQENVGWTRFKDGSIRIDQDIFVPKTRHVRIVIGQNGDAIRQVGVQARAEIEKLLEKRV 447 Query: 287 HLILFVKV 294 HL L V+V Sbjct: 448 HLYLNVRV 455 >gi|299471247|emb|CBN79102.1| PEra, plastid Era GTPase [Ectocarpus siliculosus] Length = 382 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 24/300 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G V +VG+ N GKSTL+N +G ++SIVT K TTR + GI++ + Q+++ DTPG+ Sbjct: 71 RTGYVTIVGSPNVGKSTLMNNMIGDRLSIVTPKAGTTRHRITGIMTGDDFQMIYQDTPGV 130 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+ M+ + AD + V D N + + + +++ +NK+ Sbjct: 131 LTPAYMLHEGMMNFVQEAMGDADAILFVTDLFETEFANTQ-IFERMLAAGKPIVVAVNKV 189 Query: 141 DCV--------KPER--LLE---QAEIANKLVFIEK---------TFMVSATKGHGCDDV 178 D + PER LL Q E+ + + K +SA +G D+ Sbjct: 190 DLLPSDGKSGDGPERPGLLAASTQKEVGSLKDVLGKWEERLPGATVLPISALEGINTVDL 249 Query: 179 LNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK 238 L +P P ++ D +SD P F AEI RE++F +EIPYS V+ K++E+ Sbjct: 250 AGELKKHIPEGPPLFGTDVMSDKPQRFFAAEIIREQIFGSFSQEIPYSCEVLLGKFKERM 309 Query: 239 DGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 ++ I I V + SQK +++GK G IK + ++A+ + E L V+L L VKV K+W Sbjct: 310 VETV-IDATIVVSQESQKGMVIGKKGAKIKEVGIKARVALEEHLGTRVNLRLNVKVDKNW 368 >gi|226356852|ref|YP_002786592.1| GTP-binding protein Era [Deinococcus deserti VCD115] gi|259645942|sp|C1CXC1|ERA_DEIDV RecName: Full=GTPase Era gi|226318842|gb|ACO46838.1| putative GTP-binding protein era [Deinococcus deserti VCD115] Length = 307 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 142/289 (49%), Gaps = 3/289 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 + SG VA+VG N GKSTL+N F+G KV+ + + QTTR VRGI + QIVF+DTPG Sbjct: 13 THSGFVAIVGKPNVGKSTLLNSFLGTKVAPTSPRPQTTRRGVRGISTTDTHQIVFVDTPG 72 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + KD+ K M S + D++ VVD + +++ + L L+ NK Sbjct: 73 LHKPKDALGKYMNHEVHSALADVDVIIWVVDLRHPPTDEDELVARQVRELPKPLFLVGNK 132 Query: 140 IDCVK-PERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D K P+ ++ +A++ + + + + + + LP P+ Y Sbjct: 133 TDAAKYPDEAMKLYRAQLEGRSAETSEIMLSAQNNPLQVATLREQILDILPENPFFYPRG 192 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 SD + AEI RE+ L +E+PY+ +W E++DG I I VE+ + K Sbjct: 193 AASDQSRETWAAEIIREEAMKKLREELPYAVATRVNRWTEREDGLQRIEGEIVVEKNAHK 252 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++G G+ ++ I A+K++ L++ V L L V V W D + Sbjct: 253 GMVIGSGGKQLREIGQAARKQLEVFLDRKVFLGLEVIVIPGWREDEEAL 301 >gi|291456693|ref|ZP_06596083.1| GTP-binding protein Era [Bifidobacterium breve DSM 20213] gi|291381970|gb|EFE89488.1| GTP-binding protein Era [Bifidobacterium breve DSM 20213] Length = 335 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 146/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ +Q+V +DTPGI Sbjct: 26 RSGFVAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTTDNAQLVLVDTPGI 85 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSSR--- 132 + + + + ++ D+V ++ + +E+ +L + KR Sbjct: 86 HRPRTLLGQRLNDVVEESLSDVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGSFA 145 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + ++L+ + N+ VSA K +V N L P Sbjct: 146 WRIPLIAIVTKIDELGRQQLINKLIEINEFADFADIVPVSALKHDNLAEVRNVLIDHTPE 205 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--------EKKDG 240 P +Y DQIS+ AE+ R L E+P+S VV + + + DG Sbjct: 206 GPQMYPDDQISEERPEDTIAELVRGAFLETLDDELPHSLAVVVDSIDYPEDNETGQGYDG 265 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++GK N+ + + + + I+ Q L L VKV K W Sbjct: 266 KAQVNVSIYVERDSQKPIIIGKGASNLTYVKKKLRTPVNRIVGQKAKLDLHVKVAKGWQS 325 Query: 301 DPK 303 DPK Sbjct: 326 DPK 328 >gi|307545609|ref|YP_003898088.1| GTP-binding protein Era [Halomonas elongata DSM 2581] gi|307217633|emb|CBV42903.1| GTP-binding protein Era [Halomonas elongata DSM 2581] Length = 299 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 152/289 (52%), Gaps = 11/289 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 G VA+VG N GKSTL+N +G K+SI + + QTTR V GI +E ++Q +++DTPGI Sbjct: 6 GFVAIVGRPNVGKSTLMNHILGQKISITSRRPQTTRHQVMGIKTEGDAQFIYVDTPGIHL 65 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + ++ M + + ++ D V ++D R +L+ +A + +IL +N Sbjct: 66 LEKDRNKAINRFMNQAATQALRDVDCVIFIIDRTR-WTAEDQVVLERLATVEAPVILAVN 124 Query: 139 KIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K+D + + L E+ + F ++A G ++ + LP + + D Sbjct: 125 KVDRLNDKSTLLPWLDEVRGRREF-AAIVPIAAKHGTNVAELEAEVAKYLPESVHYFPDD 183 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQ 255 Q++D + AE+ REK+ L E+PY V E++ E +G + I +I VER Q Sbjct: 184 QVTDRSLRFLAAELVREKIMRQLGDELPYQMTVEIEEFRE--EGKVTHISALIMVERQGQ 241 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 KKI++G G+ IK I +A+ E+ I+ V L L+VKV++ W D + Sbjct: 242 KKILIGDRGERIKKIGRDARLELERIVGTKVMLNLWVKVKRGWSDDDRA 290 >gi|309781188|ref|ZP_07675925.1| GTP-binding protein Era [Ralstonia sp. 5_7_47FAA] gi|308920009|gb|EFP65669.1| GTP-binding protein Era [Ralstonia sp. 5_7_47FAA] Length = 312 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 155/296 (52%), Gaps = 18/296 (6%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + R G VA+VG N GKSTL+N VG KVSI + K QTTR + GI + ++Q VF+ Sbjct: 15 VPEGFRCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFV 74 Query: 76 DTPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 DTPG F + + ++ + R ST+ D V VV++ R + L + R + + Sbjct: 75 DTPG-FQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDEKVL--SLLPRETPV 131 Query: 134 ILILNKIDCVKPERLLEQA-----EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ILI+NK+D + E ++A F E M SA D +L + LP Sbjct: 132 ILIVNKVDRLDAYTRAEMVAVFLQDMAQVFPFAEIVPM-SAKNRDDIDRLLGIVRPYLPE 190 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV- 247 +Y + ++D AEI REK+F E+PYSS V+ +K+E + +R+V Sbjct: 191 GEPMYDPEALTDRSERFLAAEIVREKVFRWTGDELPYSSTVIVDKFESEG----RLRRVF 246 Query: 248 --IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I V+R + K +++G G +K IS EA+ ++ ++ + V+L +++KV+ W + Sbjct: 247 VTILVDRDAHKAMIIGAKGAKLKQISTEARMDMEKLFDGKVYLEVWIKVKSGWADN 302 >gi|227543022|ref|ZP_03973071.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC 51866] gi|227181244|gb|EEI62216.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC 51866] Length = 308 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 151/292 (51%), Gaps = 13/292 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I ++ +TTR +RGIV ++Q++ +DTPG+ Sbjct: 16 RSGFVSFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGIVHRDDAQVIVVDTPGL 75 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + T D++ L + + ++ I D ++ +A +++ LI ++ Sbjct: 76 HRPRTLLGERLNEQVKETYADVDVIALTIPADEKIGPGDRWILDAVRNVAPKTT-LIGVV 134 Query: 138 NKIDCVKPERLLEQAEIANKLVFIE-KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V ++++ Q + ++L+ E + SA K D + + + LP P Y Sbjct: 135 TKIDKVGRDQVMVQLQALHELLGGECEVVPCSAVKQEQLDVLTDVIVDKLPEGPKFYPDT 194 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSILIRQVIYVER 252 ++D M AE+ RE L E+P+S V V E+ EK G I +IYVER Sbjct: 195 HLTDDDMETRMAELIREAALTGLKDELPHSVAVEIDEVLEQPTEKDPGKQAIHAIIYVER 254 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 P QK I+ + G+ I +A++ + E+ V L L +KV K+W DPK Sbjct: 255 PGQKSILQKRMGR----IITDARRSLIELTGHNVFLDLRIKVLKNWQSDPKA 302 >gi|83748442|ref|ZP_00945464.1| Era [Ralstonia solanacearum UW551] gi|207725214|ref|YP_002255610.1| GTP-binding protein [Ralstonia solanacearum MolK2] gi|207743589|ref|YP_002259981.1| gtp-binding protein era homolog [Ralstonia solanacearum IPO1609] gi|83724853|gb|EAP72009.1| Era [Ralstonia solanacearum UW551] gi|206590448|emb|CAQ37410.1| gtp-binding protein era homolog [Ralstonia solanacearum MolK2] gi|206594988|emb|CAQ61915.1| gtp-binding protein era homolog [Ralstonia solanacearum IPO1609] Length = 315 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 24/299 (8%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + R G VA+VG N GKSTL+N VG KVSI + K QTTR + GI + ++Q VF+ Sbjct: 18 VPEGFRCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFV 77 Query: 76 DTPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 DTPG F + + ++ + R ST+ D V VV++ R + L + R + + Sbjct: 78 DTPG-FQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVL--SLLPRETPV 134 Query: 134 ILILNKIDCVKPERLLEQA-----EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ILI+NK+D + E ++A F E M + + DD+L L P Sbjct: 135 ILIVNKVDRLDAYTRAEMVAVFLQDMAQVFPFKEIVPMSAKNR----DDILRLLGIVRPY 190 Query: 189 AP---WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 P +Y + ++D AEI REK+F E+PYSS VV +K+E + +R Sbjct: 191 LPEGEPMYDPEALTDRSERFLAAEIVREKVFRWTGDELPYSSTVVVDKFETEGR----LR 246 Query: 246 QV---IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +V I V+R + K +++G G +K IS EA+ ++ ++ + V+L ++VKV+ W + Sbjct: 247 RVFVTILVDRDAHKAMIIGAKGAKLKQISTEARMDMEKLFDGKVYLEVWVKVKSGWADN 305 >gi|227488410|ref|ZP_03918726.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC 51867] gi|227091624|gb|EEI26936.1| GTP-binding protein Era [Corynebacterium glucuronolyticum ATCC 51867] Length = 308 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 151/292 (51%), Gaps = 13/292 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I ++ +TTR +RGIV ++Q++ +DTPG+ Sbjct: 16 RSGFVSFVGRPNTGKSTLTNALVGQKIAITANQPETTRHPIRGIVHRDDAQVIVVDTPGL 75 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + T D++ L + + ++ I D ++ +A +++ LI ++ Sbjct: 76 HRPRTLLGERLNEQVKETYADVDVIALTIPADEKIGPGDRWILDAVRNVAPKTT-LIGVV 134 Query: 138 NKIDCVKPERLLEQAEIANKLVFIE-KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 KID V ++++ Q + ++L+ E + SA K D + + + LP P Y Sbjct: 135 TKIDKVGRDQVMVQLQALHELLGGECEVVPCSAVKQEQLDVLTDVIVDKLPEGPKFYPDT 194 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCV----VTEKWEEKKDGSILIRQVIYVER 252 ++D M AE+ RE L E+P+S V V E+ EK G I +IYVER Sbjct: 195 HLTDDDMETRMAELIREAALTGLKDELPHSVAVEIDEVLEQPTEKDPGKQAIHAIIYVER 254 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 P QK I+ + G+ I +A++ + E+ V L L +KV K+W DPK Sbjct: 255 PGQKGILQKRMGR----IITDARRSLIELTGHNVFLDLRIKVLKNWQSDPKA 302 >gi|237785901|ref|YP_002906606.1| GTP-binding protein Era [Corynebacterium kroppenstedtii DSM 44385] gi|237758813|gb|ACR18063.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM 44385] Length = 310 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 147/291 (50%), Gaps = 4/291 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG V+ VG N GKSTL N VG K++I + +TTR +RG++ E +QI+ +DT Sbjct: 14 DGFRSGFVSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGVIHEDNAQIIVVDT 73 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LIL 135 PG+ + + + + T D++ + V ++ +L +++ + K + + LI Sbjct: 74 PGLHRPRTLLGERLNEVVKDTYADVDVIGVCVPANEKLGPGDRWIVENVRKVAPKMPLIG 133 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 I+ K D + + Q + L+ SA +L+ L S LP P Y Sbjct: 134 IVTKTDIASKDEIGAQLLALHDLLDGADVVPCSAKDNFQLSTLLDVLTSYLPEGPKFYPD 193 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSIL-IRQVIYVERP 253 + ++D +E+ RE L E+P+S V V E ++L + +IYVERP Sbjct: 194 EHVTDEDRDTRISELIREAALSGLRDELPHSVAVEVDEVLPNPDRPNVLDVHAIIYVERP 253 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKKI+LGKN + + I +++K + E++ Q V + L +KV +W DPK Sbjct: 254 GQKKILLGKNNRRMGRIISQSRKSLIELMGQNVFVDLRIKVLDNWQSDPKS 304 >gi|187928024|ref|YP_001898511.1| GTP-binding protein Era [Ralstonia pickettii 12J] gi|241662606|ref|YP_002980966.1| GTP-binding protein Era [Ralstonia pickettii 12D] gi|187724914|gb|ACD26079.1| GTP-binding protein Era [Ralstonia pickettii 12J] gi|240864633|gb|ACS62294.1| GTP-binding protein Era [Ralstonia pickettii 12D] Length = 312 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 155/296 (52%), Gaps = 18/296 (6%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + R G VA+VG N GKSTL+N VG KVSI + K QTTR + GI + ++Q VF+ Sbjct: 15 VPEGFRCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFV 74 Query: 76 DTPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 DTPG F + + ++ + R ST+ D V VV++ R + L + R + + Sbjct: 75 DTPG-FQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDEKVL--SLLPRETPV 131 Query: 134 ILILNKIDCVKPERLLEQA-----EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ILI+NK+D + E ++A F E M SA D +L + LP Sbjct: 132 ILIVNKVDRLDAYTRAEMVAVFLQDMAQVFPFAEIVPM-SAKNRDDIDRLLGIVRPYLPE 190 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV- 247 +Y + ++D AEI REK+F E+PYSS V+ +K+E + +R+V Sbjct: 191 GEPMYDPEALTDRSERFLAAEIVREKVFRWTGDELPYSSTVIVDKFETEG----RLRRVF 246 Query: 248 --IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I V+R + K +++G G +K IS EA+ ++ ++ + V+L +++KV+ W + Sbjct: 247 VTILVDRDAHKAMIIGAKGAKLKQISTEARMDMEKLFDGKVYLEVWIKVKSGWADN 302 >gi|77457222|ref|YP_346727.1| GTP-binding protein Era [Pseudomonas fluorescens Pf0-1] gi|123605861|sp|Q3KHL8|ERA_PSEPF RecName: Full=GTPase Era gi|77381225|gb|ABA72738.1| GTP-binding protein [Pseudomonas fluorescens Pf0-1] Length = 300 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 161/294 (54%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E + Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGDVQAIYVDTPG 66 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + + ++ M + + + +K D+V VVD + + + +L+ + + LI+ LN Sbjct: 67 MHKGGEKALNRYMNKTASAALKDVDVVIFVVDRTKWTEED-QMVLERVQYVTGPLIVALN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ ++AE+ L ++++ +SA +GH D + + LP Sbjct: 126 KTD-----RIEDKAELMPHLSWLQEQLPNAQIIPISAQQGHNLDALEKVIADHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G+ L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGATLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G+ IK I EA+K++ + + + L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGERIKRIGTEARKDMELLFDSKIMLNLWVKVKGGWSDDERAL 292 >gi|107100232|ref|ZP_01364150.1| hypothetical protein PaerPA_01001255 [Pseudomonas aeruginosa PACS2] Length = 302 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 167/299 (55%), Gaps = 16/299 (5%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D + SR G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E E Q V Sbjct: 3 DDIPAGSRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGEVQAV 62 Query: 74 FLDTPGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 ++DTPG+ + + + ++ M R + + +K D+V VVD R + + +L+ + S Sbjct: 63 YVDTPGLHKSGEKALNRYMNRTASAALKDVDVVIFVVDRTRWTEED-QMVLERVQYVSCP 121 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVF----IEKTFMVSATKGHGCD-DVLNYLCST-L 186 +++ +NK D R+ E+A++ L + + K +V + HG + DVL L + L Sbjct: 122 VLIAVNKTD-----RIEEKADLLPHLEWLTQQLPKAEVVPISAQHGTNLDVLEKLVAERL 176 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IR 245 P + + DQI+D AE+ REK+ L E+PY V E++ K++G IL I Sbjct: 177 PESEHFFPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQEGRILHIH 234 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +I VER QKKI++G G+ IK+I A+K++ + + V L L+VKV+ W D + Sbjct: 235 ALILVEREGQKKIIIGDKGERIKSIGQNARKDMEVLFDSKVMLNLWVKVKGGWSDDERA 293 >gi|15595968|ref|NP_249462.1| GTP-binding protein Era [Pseudomonas aeruginosa PAO1] gi|116048687|ref|YP_792513.1| GTP-binding protein Era [Pseudomonas aeruginosa UCBPP-PA14] gi|218893286|ref|YP_002442155.1| GTP-binding protein Era [Pseudomonas aeruginosa LESB58] gi|254239133|ref|ZP_04932456.1| GTP-binding protein Era [Pseudomonas aeruginosa C3719] gi|254245026|ref|ZP_04938348.1| GTP-binding protein Era [Pseudomonas aeruginosa 2192] gi|296390879|ref|ZP_06880354.1| GTP-binding protein Era [Pseudomonas aeruginosa PAb1] gi|313105593|ref|ZP_07791859.1| GTP-binding protein Era [Pseudomonas aeruginosa 39016] gi|12230892|sp|Q9XCX8|ERA_PSEAE RecName: Full=GTPase Era gi|122257793|sp|Q02HS3|ERA_PSEAB RecName: Full=GTPase Era gi|226741226|sp|B7UYX1|ERA_PSEA8 RecName: Full=GTPase Era gi|9946660|gb|AAG04160.1|AE004512_3 GTP-binding protein Era [Pseudomonas aeruginosa PAO1] gi|115583908|gb|ABJ09923.1| GTP-binding protein Era [Pseudomonas aeruginosa UCBPP-PA14] gi|126171064|gb|EAZ56575.1| GTP-binding protein Era [Pseudomonas aeruginosa C3719] gi|126198404|gb|EAZ62467.1| GTP-binding protein Era [Pseudomonas aeruginosa 2192] gi|218773514|emb|CAW29326.1| GTP-binding protein Era [Pseudomonas aeruginosa LESB58] gi|310878361|gb|EFQ36955.1| GTP-binding protein Era [Pseudomonas aeruginosa 39016] Length = 305 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 167/299 (55%), Gaps = 16/299 (5%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D + SR G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E E Q V Sbjct: 6 DDIPAGSRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGEVQAV 65 Query: 74 FLDTPGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 ++DTPG+ + + + ++ M R + + +K D+V VVD R + + +L+ + S Sbjct: 66 YVDTPGLHKSGEKALNRYMNRTASAALKDVDVVIFVVDRTRWTEED-QMVLERVQYVSCP 124 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVF----IEKTFMVSATKGHGCD-DVLNYLCS-TL 186 +++ +NK D R+ E+A++ L + + K +V + HG + DVL L + L Sbjct: 125 VLIAVNKTD-----RIEEKADLLPHLEWLTQQLPKAEVVPISAQHGTNLDVLEKLVAERL 179 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IR 245 P + + DQI+D AE+ REK+ L E+PY V E++ K++G IL I Sbjct: 180 PESEHFFPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQEGRILHIH 237 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +I VER QKKI++G G+ IK+I A+K++ + + V L L+VKV+ W D + Sbjct: 238 ALILVEREGQKKIIIGDKGERIKSIGQNARKDMEVLFDSKVMLNLWVKVKGGWSDDERA 296 >gi|254374550|ref|ZP_04990031.1| hypothetical protein FTDG_00722 [Francisella novicida GA99-3548] gi|151572269|gb|EDN37923.1| hypothetical protein FTDG_00722 [Francisella novicida GA99-3548] Length = 297 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 157/289 (54%), Gaps = 10/289 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G ++++G N GKSTL+N + KVSI + K QTTR + GI + ++Q +++DTPGI Sbjct: 5 GYISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHI 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILILNK 139 + +K M + + + K D++ VV+ + EL+ NI + LK R+ L++NK Sbjct: 65 KEPKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKH---SEIRIFLVVNK 121 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSADQ 197 +D K E + I KL F + + VSA +GH +++ + + LP + + Y DQ Sbjct: 122 VDKKKSLEAAMFIESIKEKLSFYDVIY-VSAKQGHNINELESRIEKLLPESEYFFYEEDQ 180 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 I+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER SQK Sbjct: 181 ITDRSIKFMVAEIIREKIMRTIGSEVPYQIAVEIDSYKVDQEKNIVDIYASILVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 241 GIVIGAKGAKLKKIGTDSRIDIERLVGMQVNLKTHVKVKNGWSDDDRAL 289 >gi|126667176|ref|ZP_01738150.1| GTP-binding protein Era [Marinobacter sp. ELB17] gi|126628332|gb|EAZ98955.1| GTP-binding protein Era [Marinobacter sp. ELB17] Length = 305 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 156/286 (54%), Gaps = 10/286 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +SR G VA+VG N GKSTL+N +G K+SI + K QTTR V GI + Q V++DTP Sbjct: 11 DSRCGFVAIVGRPNVGKSTLMNHILGQKLSITSRKPQTTRHQVLGIKTIGPVQAVYVDTP 70 Query: 79 GIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLIL 135 G+ + + ++ M + + S +K D+V V+D +L D +L++++ +IL Sbjct: 71 GMHEEEPRAINRYMNKAATSALKGVDVVVFVLD---QLAWTTADELVLEKLSSLKCPVIL 127 Query: 136 ILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D + K E LL ++ ++ + VSA + + + LP + Y Sbjct: 128 AINKVDKIEKRETLLPHLDMLSRKRDFAEMIPVSALRETNLVPLEECVGRFLPQSVHFYP 187 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 DQI+D +E+ REK+ L E+PYS V E++ K DG L + VI VER Sbjct: 188 DDQITDRSERFMASEMVREKITRQLGAELPYSVAVEIEEF--KHDGKTLHVAAVILVERE 245 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 QKKI++G G +++I +A+ ++ + + V L L+VKV++ W Sbjct: 246 GQKKIIIGDKGDRLRSIGQDARIDMERMFDNKVMLRLWVKVKRGWA 291 >gi|300691971|ref|YP_003752966.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum PSI07] gi|299079031|emb|CBJ51693.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum PSI07] Length = 312 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 154/294 (52%), Gaps = 24/294 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VG KVSI + K QTTR + GI + ++Q VF+DTPG Sbjct: 20 RCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPG- 78 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + + ++ + R ST+ D V VV++ R + L + R + +ILI+N Sbjct: 79 FQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVL--SLLPRETPVILIVN 136 Query: 139 KIDCVKPERLLEQA-----EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-- 191 K+D + E ++A F E M + + DD+L L P P Sbjct: 137 KVDRLDAYTRAEMVAVFLQDMAQVFPFKEIVPMSAKNR----DDILRLLGIVRPYLPEGE 192 Query: 192 -VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV--- 247 +Y + ++D AEI REK+F E+PYSS VV +K+E + +R+V Sbjct: 193 PMYDPEALTDRSERFLAAEIVREKVFRWTGDELPYSSTVVVDKFETEGR----LRRVFVT 248 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I V+R + K +++G G +K IS EA+ ++ ++ + V+L ++VKV+ W + Sbjct: 249 ILVDRDAHKAMIIGAKGAKLKQISTEARMDMEKLFDGKVYLEVWVKVKSGWADN 302 >gi|241668676|ref|ZP_04756254.1| GTP-binding protein Era [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877209|ref|ZP_05249919.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843230|gb|EET21644.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 297 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 159/291 (54%), Gaps = 10/291 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G ++++G N GKSTL+N + K+SI + K QTTR + GI + ++Q +++DTPGI Sbjct: 3 RCGYISIIGRPNVGKSTLLNNILKYKISITSRKPQTTRHQITGIKTLGDTQFIYVDTPGI 62 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILIL 137 + + +K M + + + +K D++ VV+ + EL+ NI + LK + L++ Sbjct: 63 HIDEPKAINKFMNKAATAMVKEVDVILFVVELGKWTELEDNIVEKLK---YSQVPIFLVV 119 Query: 138 NKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSA 195 NK+D K E + I KL F + + VSA +GH +++ + + LP + + Y Sbjct: 120 NKVDKKKSLEASMFIESIKEKLSFYDVIY-VSAKQGHNVNELESRIEKLLPESEYFFYED 178 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQI+D + AEI REK+ + E+PY V + ++ ++ SI+ I I VER S Sbjct: 179 DQITDRSIKFMVAEIIREKIMRTIGNEVPYQITVEIDSYKVDQEKSIVDIYASILVERDS 238 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 239 QKGIVIGAKGTKLKKIGTDSRIDIERLVGMKVNLKTHVKVKSGWSDDERAL 289 >gi|291516984|emb|CBK70600.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum F8] Length = 354 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 145/303 (47%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR VRGI++ +Q+V +DTPGI Sbjct: 45 RSGFVAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAVRGILTADHAQLVLVDTPGI 104 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSSR--- 132 + + + + ++ D+V ++ + +E+ +L + KR Sbjct: 105 HRPRTLLGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFK 164 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + ++L+ + N VSA K +V N L P Sbjct: 165 WRIPLIAIVTKIDELGRQQLINKLIEINDFADFSDIVPVSALKHDNLAEVKNVLIEHTPE 224 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--------EKKDG 240 P +Y DQIS+ AE+ R L E+P+S VV + + + DG Sbjct: 225 GPQMYPDDQISEERPEDTIAELVRGAFLETLDDELPHSLAVVVDSIDYPEDNETGQGYDG 284 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++GK N+ + + + + I+ Q L L VKV K W Sbjct: 285 KAQVNVSIYVERDSQKPIIIGKGASNLTYVKKKLRTPVNRIVGQKAKLDLHVKVAKGWQS 344 Query: 301 DPK 303 DPK Sbjct: 345 DPK 347 >gi|149926461|ref|ZP_01914722.1| GTP-binding protein Era [Limnobacter sp. MED105] gi|149824824|gb|EDM84038.1| GTP-binding protein Era [Limnobacter sp. MED105] Length = 298 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 157/290 (54%), Gaps = 13/290 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK----ESQIVFL 75 S+ G +A+VG N GKSTL+N +G +SI + K QTTR V G+++E +Q +F+ Sbjct: 4 SKCGVIAVVGRPNVGKSTLMNGMIGEHLSITSSKPQTTRHRVLGVMTETIKDVPTQFIFV 63 Query: 76 DTPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 DTPG F K ++ +K M R + + +++ V++ + ++ L E+ + L Sbjct: 64 DTPG-FQTKHSNALNKTMNRAVLTALADVNVILWVIEQGKLTPADMKVL--ELCPKGVPL 120 Query: 134 ILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + ++NK+D + K E L +++ + F + +SA D + + + LP P+ Sbjct: 121 VAVVNKVDLLEKKAEMLPFLQKVSGQRNF-DAIVPLSAQAIKNLDALKEAVSALLPEQPF 179 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 Y D ++D P AE REKLF + E+PY+ VV +K+ E ++G +I I V+ Sbjct: 180 FYDEDTLTDRPEKFLAAERIREKLFRLVGDELPYTCTVVIDKF-EIEEGRRVIYASILVD 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 R S K +++GK G+ +K I EA++++ + VHL +VKV+ W + Sbjct: 239 RSSHKAMIIGKGGEKLKRIGSEARQDMERLFGGSVHLETWVKVRSGWADN 288 >gi|32265807|ref|NP_859839.1| GTP-binding protein Era [Helicobacter hepaticus ATCC 51449] gi|32261856|gb|AAP76905.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 306 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 161/285 (56%), Gaps = 13/285 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV--SEKESQIVFLDT 77 +R+G VA +G NAGKSTL+N +G +++V+HK TR ++ IV + +QI+F+DT Sbjct: 13 TRAGFVATLGRPNAGKSTLLNHLLGENLALVSHKANATRKQLQLIVPYAPLNAQIIFVDT 72 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI + + ++ M+ + + D+ + ++ H L E++ + + IL+L Sbjct: 73 PGIHHQEKLLNQYMLSQALRALSDYDMALYLAPVSDDIGHYEHFL--ELS-QGKKHILLL 129 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAPWVY 193 +KID E +L + IA F + TF+ VS KG + +L+ + S LP +P++Y Sbjct: 130 SKIDTCTNEEILHK--IAQYQRFSD-TFLELLPVSVKKGFDREKILHTIASHLPFSPFLY 186 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + +S+ + E+ R+ LF +L EIPY + VV +K+EE + + +I VE+ Sbjct: 187 DEEILSNASLKEIYKEMIRQSLFENLSDEIPYEADVVIKKFEESAEQDRIFAHII-VEKS 245 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK +++GK G +IK IS A+++I + + + L L V+V K W Sbjct: 246 SQKGVVIGKGGSSIKRISKCARQKIESLSSKAIFLKLDVEVYKGW 290 >gi|88855034|ref|ZP_01129699.1| GTP-binding protein Era [marine actinobacterium PHSC20C1] gi|88815562|gb|EAR25419.1| GTP-binding protein Era [marine actinobacterium PHSC20C1] Length = 299 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 151/287 (52%), Gaps = 6/287 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G V VG N GKSTL N VG KV+I + K QTTR +RG+V ++ Q++ +DTPG+ Sbjct: 8 RAGFVTFVGRPNVGKSTLTNALVGEKVAITSSKPQTTRRAIRGLVHREDGQLIIVDTPGM 67 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T+ D++ L + ++ ++ I++ L + ++ + I+ Sbjct: 68 HRPRTLLGERLNSIVQDTLGEVDVIGLCIPANEKIGPGDRYINEQLDSFPR--AKKVAIV 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID + EQ + ++L ++ +S+ D + L LP++ +Y D Sbjct: 126 TKIDASSRPGVAEQLKAVSELRDWDEIIPISSFDSIQLDILSTELVKLLPISHALYPTDT 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 ++D AE+ RE + E+P+S V + E+ D +L + I+VER SQK Sbjct: 186 VTDESTEARVAELIREAALEGVMDELPHSIAVTIDDMIERDDKDLLEVFANIFVERDSQK 245 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++GK G+ ++ + A+KEI +++ + + L L VKV K+W D K Sbjct: 246 GIIIGKGGERLQDVGARARKEIEKLVGKQIFLSLRVKVAKEWQRDSK 292 >gi|254382934|ref|ZP_04998290.1| GTP-binding protein Era [Streptomyces sp. Mg1] gi|194341835|gb|EDX22801.1| GTP-binding protein Era [Streptomyces sp. Mg1] Length = 323 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 158/297 (53%), Gaps = 17/297 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G VG NAGKSTL N VG KV+I +++ QTTR VRGIV ++Q+V +DTPG+ Sbjct: 23 RAGFACFVGRPNAGKSTLTNALVGTKVAITSNRPQTTRHTVRGIVHRPDAQLVLVDTPGL 82 Query: 81 FNAKDSYHKLM---IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILI 136 + + + +R +W+ + D++ + + ++L + KE+A + + I I Sbjct: 83 HKPRTLLGERLNDVVRTTWAEV---DVIGFCLPADQKLGPGDKFIAKELAGIKKTPKIAI 139 Query: 137 LNKIDCVKPERLLEQA----EIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + K D V+ ++L EQ ++A +L F + VSA + + + LPL+P Sbjct: 140 ITKTDLVESKQLAEQLLAVHQLAAELGFEWAEIVPVSAVGDSQVQLLADLIAPLLPLSPP 199 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSIL-IRQ 246 +Y ++D P AE+ RE + E+P+S VV E + D +L I Sbjct: 200 LYPEGDLTDEPEMVMVAELIREAALEGVRDELPHSIAVVVEEMIPRENRPADRPLLDIHA 259 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +Y+ERPSQK I++G G +K + ++++ I +L PV L L VKV KDW DPK Sbjct: 260 NLYIERPSQKGIIIGPKGARLKEVGMKSRTHIEALLGTPVFLDLHVKVAKDWQRDPK 316 >gi|325265813|ref|ZP_08132499.1| GTP-binding protein Era [Kingella denitrificans ATCC 33394] gi|324982451|gb|EGC18077.1| GTP-binding protein Era [Kingella denitrificans ATCC 33394] Length = 308 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 158/302 (52%), Gaps = 35/302 (11%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R G +A+VG N GKSTL+N +G K+SI + K QTTR V GI ++ +Q VF+DT Sbjct: 15 DGYRCGFIAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKVTGIYTDDTAQFVFVDT 74 Query: 78 PGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 PG D + L RL+ + + D V VV++ R + + +LK++ + ++ Sbjct: 75 PGF--QTDHRNALNDRLNLNVTEAMSGVDAVAFVVEAMRFTEAD-RTVLKQLPNKIP-VV 130 Query: 135 LILNK---------------IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 L++NK ID V+ E AE+ VSA G ++L Sbjct: 131 LVVNKIDKDKAKDKHALNAFIDQVRQEFDFAAAEV------------VSAKHGLRIANLL 178 Query: 180 NYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD 239 L LP + +Y D ++D EI REKLF +L +E+PY+ V E+++E ++ Sbjct: 179 ETLKPFLPESVPMYPEDMVTDKSSRFLAMEIVREKLFRYLGEELPYAMNVEVEQFKE-EN 237 Query: 240 GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 G I + V++ +QK I++G+ G+ +K IS EA+ ++ ++ + V L ++VKV+ W Sbjct: 238 GMFHIYIAVLVDKENQKPIVIGRGGEKLKKISTEARLDMEKLFDCKVFLKVWVKVKSGWA 297 Query: 300 HD 301 D Sbjct: 298 DD 299 >gi|187924874|ref|YP_001896516.1| GTP-binding protein Era [Burkholderia phytofirmans PsJN] gi|187716068|gb|ACD17292.1| GTP-binding protein Era [Burkholderia phytofirmans PsJN] Length = 299 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 150/287 (52%), Gaps = 13/287 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VG KVSI + K QTTR + GI + ++Q +F+DTPG Sbjct: 10 RCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLDDAQYIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F K S ++ + R ST+ D + V+++ R + +L I S +LI N Sbjct: 69 FQTKHSGALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPP-SVPTLLIAN 126 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW---VYSA 195 K+D V + L ++ + K + DD+ + + P P +Y Sbjct: 127 KLDRVSDKDSL--FPFMQQVSALHKFAEIVPLSAKNLDDIKRLMATVKPFLPEGAPIYGE 184 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPS 254 D ++D AEI REK+F E+PY+S V+ +K+E +G + I I VER + Sbjct: 185 DDLTDRSERFLAAEILREKVFRWTGDELPYTSTVLIDKFE--TEGRLRRIFATIMVERDT 242 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K +++G+ G +K IS EA+ ++ ++ + PV+L F+KV+ W + Sbjct: 243 HKAMIIGQKGAKLKQISTEARLDMEKLFDGPVYLETFIKVKSGWADN 289 >gi|23465433|ref|NP_696036.1| GTP-binding protein Era [Bifidobacterium longum NCC2705] gi|46191170|ref|ZP_00120253.2| COG1159: GTPase [Bifidobacterium longum DJO10A] gi|189439456|ref|YP_001954537.1| GTP-binding protein Era [Bifidobacterium longum DJO10A] gi|227545909|ref|ZP_03975958.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312132864|ref|YP_004000203.1| era [Bifidobacterium longum subsp. longum BBMN68] gi|322688983|ref|YP_004208717.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] gi|322690952|ref|YP_004220522.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|23326083|gb|AAN24672.1| widely conserved GTP-binding protein [Bifidobacterium longum NCC2705] gi|189427891|gb|ACD98039.1| GTPase [Bifidobacterium longum DJO10A] gi|227213543|gb|EEI81392.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773833|gb|ADQ03321.1| Era [Bifidobacterium longum subsp. longum BBMN68] gi|320455808|dbj|BAJ66430.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320460319|dbj|BAJ70939.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] Length = 354 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 145/303 (47%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ +Q+V +DTPGI Sbjct: 45 RSGFVAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPGI 104 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSSR--- 132 + + + + ++ D+V ++ + +E+ +L + KR Sbjct: 105 HRPRTLLGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFK 164 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + ++L+ + N VSA K +V N L P Sbjct: 165 WRIPLIAIVTKIDELGRQQLINKLIEINDFADFSDIVPVSALKHDNLAEVKNVLIEHTPE 224 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--------EKKDG 240 P +Y DQIS+ AE+ R L E+P+S VV + + + DG Sbjct: 225 GPQMYPDDQISEERPEDTIAELVRGAFLETLDDELPHSLAVVVDSIDYPEDNETGQGYDG 284 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++GK N+ + + + + I+ Q L L VKV K W Sbjct: 285 KAQVNVSIYVERDSQKPIIIGKGASNLTYVKKKLRTPVNRIVGQKAKLDLHVKVAKGWQS 344 Query: 301 DPK 303 DPK Sbjct: 345 DPK 347 >gi|213692452|ref|YP_002323038.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523913|gb|ACJ52660.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458597|dbj|BAJ69218.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 354 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 145/303 (47%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ +Q+V +DTPGI Sbjct: 45 RSGFVAVVGRPNVGKSTLINTLIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPGI 104 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSSR--- 132 + + + + ++ D+V ++ + +E+ +L + KR Sbjct: 105 HRPRTLLGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFK 164 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + ++L+ + N VSA K +V N L P Sbjct: 165 WRIPLIAIVTKIDELGRQQLINKLIEINDFADFSDIVPVSALKHDNLAEVKNVLIEHTPE 224 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--------EKKDG 240 P +Y DQIS+ AE+ R L E+P+S VV + + + DG Sbjct: 225 GPQMYPDDQISEERPEDTIAELVRGAFLETLDDELPHSLAVVVDSIDYPEDNETGQGYDG 284 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++GK N+ + + + + I+ Q L L VKV K W Sbjct: 285 KAQVNVSIYVERDSQKPIIIGKGASNLTYVKKKLRTPVNRIVGQKAKLDLHVKVAKGWQS 344 Query: 301 DPK 303 DPK Sbjct: 345 DPK 347 >gi|317482192|ref|ZP_07941214.1| GTP-binding protein Era [Bifidobacterium sp. 12_1_47BFAA] gi|316916330|gb|EFV37730.1| GTP-binding protein Era [Bifidobacterium sp. 12_1_47BFAA] Length = 354 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 145/303 (47%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ +Q+V +DTPGI Sbjct: 45 RSGFVAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPGI 104 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSSR--- 132 + + + + ++ D+V ++ + +E+ +L + KR Sbjct: 105 HRPRTLLGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFK 164 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + ++L+ + N VSA K +V N L P Sbjct: 165 WRIPLIAIVTKIDELGRQQLINKLIEINDFADFSDIVPVSALKHDNLAEVKNVLIEHTPE 224 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--------EKKDG 240 P +Y DQIS+ AE+ R L E+P+S VV + + + DG Sbjct: 225 GPQMYPDDQISEERPEDTIAELVRGAFLETLDDELPHSLAVVVDSIDYPEDNETGQGYDG 284 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++GK N+ + + + + I+ Q L L VKV K W Sbjct: 285 KAQVNVSIYVERDSQKPIIIGKGASNLTYVKKKLRTPVNRIVGQKAKLDLHVKVAKGWQS 344 Query: 301 DPK 303 DPK Sbjct: 345 DPK 347 >gi|239622043|ref|ZP_04665074.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454044|ref|YP_003661187.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum JDM301] gi|239515234|gb|EEQ55101.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296183475|gb|ADH00357.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum JDM301] Length = 354 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 145/303 (47%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ +Q+V +DTPGI Sbjct: 45 RSGFVAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPGI 104 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSSR--- 132 + + + + ++ D+V ++ + +E+ +L + KR Sbjct: 105 HRPRTLLGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFK 164 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + ++L+ + N VSA K +V N L P Sbjct: 165 WRIPLIAIVTKIDELGRQQLINKLIEINDFADFSDIVPVSALKHDNLAEVKNVLIEHTPE 224 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--------EKKDG 240 P +Y DQIS+ AE+ R L E+P+S VV + + + DG Sbjct: 225 GPQMYPDDQISEERPEDTIAELVRGAFLETLDDELPHSLAVVVDSIDYPEDNETGQGYDG 284 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++GK N+ + + + + I+ Q L L VKV K W Sbjct: 285 KAQVNVSIYVERDSQKPIIIGKGASNLTYVKKKLRTPVNRIVGQKAKLDLHVKVAKGWQS 344 Query: 301 DPK 303 DPK Sbjct: 345 DPK 347 >gi|220905798|ref|YP_002481109.1| GTP-binding protein Era [Cyanothece sp. PCC 7425] gi|219862409|gb|ACL42748.1| GTP-binding protein Era [Cyanothece sp. PCC 7425] Length = 315 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 159/282 (56%), Gaps = 9/282 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VAL+G N GKSTL+N+ +G KV+I + QTTR+ +RGI++ +Q++F+DTPGI Sbjct: 22 KSGFVALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRNRLRGILTTSTAQLIFVDTPGI 81 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILI-LN 138 S +++++ + I D+V +VD +K D + E+ +++ +++ +N Sbjct: 82 HKPHHSLGEVLVKNATLAIAAVDLVLFIVDG--SVKAGGGDRFVAELLQKAKTPVMVGVN 139 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K D L+++ + L+ + +V SA G G + L LP P+ Y D Sbjct: 140 KSDAQTDPDTLDRS--YDSLIAEQGWPLVKFSALTGEGLAALQTQLIDALPPGPYYYPPD 197 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D P E+ RE++ L +E+P+S VV ++ E+ + + ++ I+VER SQK Sbjct: 198 LVTDQPERFIMGELIREQILLQTREEVPHSVAVVIDQVTEEPEITRVL-ATIHVERSSQK 256 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I++GK G +K I A++++ +++ V+L LFVKV W Sbjct: 257 GILIGKGGSMLKAIGSAAREQMQKLIAGKVYLELFVKVLPKW 298 >gi|113868516|ref|YP_727005.1| GTP-binding protein Era [Ralstonia eutropha H16] gi|113527292|emb|CAJ93637.1| GTPase [Ralstonia eutropha H16] Length = 312 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 155/291 (53%), Gaps = 18/291 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 20 RCGTVAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDAQYVFVDTPG- 78 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + + ++ + R ST+ D+V VV++ + +L + K + ++L+ N Sbjct: 79 FQTRHASALNRSLNRAVTSTLSSVDLVLFVVEAGY-YGADDEKVLSLLPKNTP-VLLVAN 136 Query: 139 KIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K+D V E LE ++ + F E M + T H + + LP +Y Sbjct: 137 KLDRVNGENRLEVMMPFLEKMGQQFPFREVVPMTAKTHDH-IARLFEIIRPYLPEGEPMY 195 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IYV 250 AD ++D +EI REK+F E+PY+S V+ +K+E + +R+V I V Sbjct: 196 DADAMTDRSERFLASEIIREKVFRWTGDELPYTSTVIIDKFETEGR----LRRVFATILV 251 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ER + K +++G G +K IS EA+ ++ ++ + V+L +++KV+ W + Sbjct: 252 ERDAHKAMIIGNKGAKLKQISTEARLDMEKLFDGKVYLEMWIKVKSGWADN 302 >gi|91775217|ref|YP_544973.1| GTP-binding protein Era [Methylobacillus flagellatus KT] gi|91775361|ref|YP_545117.1| GTP-binding protein Era [Methylobacillus flagellatus KT] gi|91709204|gb|ABE49132.1| GTP-binding protein Era [Methylobacillus flagellatus KT] gi|91709348|gb|ABE49276.1| GTP-binding protein Era [Methylobacillus flagellatus KT] Length = 296 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 161/300 (53%), Gaps = 31/300 (10%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR + GI + +++Q +F+DTPG Sbjct: 8 RCGTVAIVGRPNVGKSTLLNHILGLKLSITSRKAQTTRHRLLGIHTTEDTQFLFVDTPG- 66 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSRLIL 135 F K ++ ++ + R + D+V V++ +++ D +++ + ++ + L Sbjct: 67 FQQKHINALNRNLNRTVTQVLSEVDVVLFVIEP-----MHLGDADRKVLQLLPKNQPVFL 121 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFM---------VSATKGHGCDDVLNYLCSTL 186 ++NK D + + N L I+ + VSA K D++L + L Sbjct: 122 VVNKADLM--------GDKGNLLPLIQDFDLEFPFTGIIPVSAKKNLYLDELLAAVREHL 173 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIR 245 P P +Y D+++D AE+ REK+F L E+PYS V EK+E+ +G++ I Sbjct: 174 PEQPAIYGEDELTDRNERFLAAEMLREKIFRLLGDEVPYSVAVEIEKFEQ--EGNLRRIH 231 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I V++ SQK +++GK G+ +K IS EA++++ ++ + L +VKV+ W D + Sbjct: 232 AAIIVDKDSQKPMLIGKGGEKLKRISTEARQDMEKLFGGKIWLETWVKVKSGWADDERAL 291 >gi|5114184|gb|AAD40230.1|AF123492_2 Era [Pseudomonas aeruginosa] Length = 305 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 98/299 (32%), Positives = 163/299 (54%), Gaps = 16/299 (5%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D + SR G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E E Q V Sbjct: 6 DDIPAGSRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGEVQAV 65 Query: 74 FLDTPGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 ++DTPG+ + + + ++ M R + + +K D+V VVD R + + +L+ + S Sbjct: 66 YVDTPGLHKSGEKALNRYMNRTASAALKDVDVVIFVVDRTRWTEED-QMVLERVQYVSCP 124 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTL 186 +++ +NK D R+ E+A++ L ++ + +S G D + + L Sbjct: 125 VLIAVNKTD-----RIEEKADLLPHLEWLTQQLPKAEVVPISGQDGTNLDVLEKLVAECL 179 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IR 245 P + + + DQI++ AE+ REK+ L E+PY V E++ K++G IL I Sbjct: 180 PESEYFFPEDQITERSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQEGRILHIH 237 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +I VER QKKI++G G+ IK+I A+K++ + + V L L+VKV+ W D + Sbjct: 238 ALILVEREGQKKIIIGDKGERIKSIGQNARKDMEVLFDSKVMLNLWVKVKGGWSDDERA 296 >gi|332678448|gb|AEE87577.1| GTP-binding protein Era [Francisella cf. novicida Fx1] Length = 297 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 156/289 (53%), Gaps = 10/289 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G ++++G N GKSTL+N + KVSI + K QTTR + GI + +Q +++DTPGI Sbjct: 5 GYISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGGTQFIYVDTPGIHI 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILILNK 139 + +K M + + + K D++ VV+ + EL+ NI + LK R+ L++NK Sbjct: 65 KEPKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKH---SEIRIFLVVNK 121 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSADQ 197 +D K E + I KL F + + VSA +GH +++ + + LP + + Y DQ Sbjct: 122 VDKKKSLEAAMFIESIKEKLSFYDVIY-VSAKQGHNINELESRIEKLLPESEYFFYEEDQ 180 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 I+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER SQK Sbjct: 181 ITDRSIKFMVAEIIREKIMRTIGSEVPYQIAVEIDSYKVDQEKNIVDIYASILVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 241 GIVIGAKGAKLKKIGTDSRIDIERLVGMQVNLKTHVKVKSGWSDDDRAL 289 >gi|152984162|ref|YP_001350090.1| GTP-binding protein Era [Pseudomonas aeruginosa PA7] gi|150959320|gb|ABR81345.1| GTP-binding protein Era [Pseudomonas aeruginosa PA7] Length = 302 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 163/299 (54%), Gaps = 16/299 (5%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D + SR G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E E Q V Sbjct: 3 DDIPAGSRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGEVQAV 62 Query: 74 FLDTPGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 ++DTPG+ + + + ++ M R + + +K D+V VVD R + + +L+ + S Sbjct: 63 YVDTPGLHKSGEKALNRYMNRTASAALKDVDVVIFVVDRSRWTEED-QMVLERVQYVSCP 121 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTL 186 +++ +NK D R+ E+A++ L ++ + +SA G + + + L Sbjct: 122 VLIAVNKTD-----RIEEKADLLPHLEWLTQQLPKAEVVPISAQNGTNLEVLEKLVAERL 176 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IR 245 P + + DQI+D AE+ REK+ L E+PY V E++ K++G IL I Sbjct: 177 PESEHFFPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQEGRILHIH 234 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +I VER QKKI++G G+ IK+I A+K++ + + V L L+VKV+ W D + Sbjct: 235 ALILVEREGQKKIIIGDKGERIKSIGQNARKDMEVLFDSKVMLNLWVKVKGGWSDDERA 293 >gi|307720794|ref|YP_003891934.1| GTP-binding protein Era [Sulfurimonas autotrophica DSM 16294] gi|306978887|gb|ADN08922.1| GTP-binding protein Era [Sulfurimonas autotrophica DSM 16294] Length = 294 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 150/286 (52%), Gaps = 10/286 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++G V+L+G NAGKSTL+N +G K+++V+ K TR IV + +QI+F+DTPG Sbjct: 2 TKAGFVSLIGRPNAGKSTLMNSLLGEKIAMVSQKANATRKRSNAIVMHENAQIIFVDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCL---VVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + + ++ M+ + + D++ V DS ++ +I + I++ Sbjct: 62 LHEKEKMLNQFMLDEALKAMGDCDLIVYLAPVTDSTEH-----YEKFLQINNGRVKHIIV 116 Query: 137 LNKIDCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 L+KID V E+L + NK E V+ + G D+L+ + LP +P++Y Sbjct: 117 LSKIDQVSQEKLFKAIGSYNKYADHFEALIPVAIPRKVGHKDLLDIIAKNLPDSPYLYDP 176 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 + ++ + A RE +F ++ E+PY S V+ + EE+ G I I +E+ SQ Sbjct: 177 EDLTSELVRDIYAGFVREAIFENISDEVPYESDVIIDSIEEEA-GIDRIYATIIIEKESQ 235 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK G+ +K I A+++I + + +L L V V+K W D Sbjct: 236 KGIIIGKGGEAVKRIGKSAREKIERLSGKKAYLNLQVTVKKGWTKD 281 >gi|91784706|ref|YP_559912.1| GTP-binding protein Era [Burkholderia xenovorans LB400] gi|91688660|gb|ABE31860.1| GTP-binding protein Era [Burkholderia xenovorans LB400] Length = 299 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 154/291 (52%), Gaps = 21/291 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VG KVSI + K QTTR + GI + +++Q +F+DTPG Sbjct: 10 RCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPG- 68 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F K S ++ + R ST+ D + V+++ R + +L I S +LI N Sbjct: 69 FQTKHSGALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPP-SVPTLLIAN 126 Query: 139 KIDCVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW--- 191 K+D V + ++Q +K I V + H DD+ + + P P Sbjct: 127 KLDRVSDKDSLFPFMQQVSALHKFAEI-----VPLSAKH-PDDIKRLMATVKPFLPEGAP 180 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYV 250 +Y D ++D AEI REK+F E+PY+S V+ +K+E +G + I I V Sbjct: 181 IYGEDDLTDRSERFLAAEILREKVFRWTGDELPYTSTVLIDKFE--TEGRLRRIFATIMV 238 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +R + K +++G+ G +K IS EA+ ++ ++ + PV+L F+KV+ W + Sbjct: 239 DRDTHKAMIIGQKGAKLKQISTEARLDMEKLFDGPVYLETFIKVKSGWADN 289 >gi|304389932|ref|ZP_07371889.1| GTP-binding protein Era [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657184|ref|ZP_07910068.1| GTP-binding protein Era [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326825|gb|EFL94066.1| GTP-binding protein Era [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492287|gb|EFU81894.1| GTP-binding protein Era [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 333 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 151/299 (50%), Gaps = 7/299 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D+ +D R+G A++G N GKSTL+N VG K++I + + +TTR + RGIV + Q+ Sbjct: 31 RDWPED-FRAGFAAVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQL 89 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS- 131 + +DTPGI + + + + D+ V + + + +++ K + Sbjct: 90 ILVDTPGIHRPRTLLGQRLNDMVDDAFSEVDVAVFCVPADQPIGPGDRRIVETQLKTAHF 149 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 I ++ K D E++ EQ ++L + +SA +G +++ L LPL+P Sbjct: 150 PAIAVVTKTDAASREQIAEQLLAVSQLHDFAEIVPISAHQGTQVQTLIDLLGQRLPLSPP 209 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSIL-IRQ 246 +Y DQ++D +E+ RE L +E+P+S V E + DG I Sbjct: 210 LYPRDQVTDEDDTAMISELIREAALESLSQELPHSLAVQVEEIIKQPGRSGDGEFWKIHV 269 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++VER SQK I++G+ G +K I +A+ +I ++ V+L L V+ K+W +PK Sbjct: 270 NLFVERDSQKAIVIGRKGARLKEIGTKARPQIESLVGHHVYLDLHVRTAKEWQRNPKML 328 >gi|118594602|ref|ZP_01551949.1| GTPase [Methylophilales bacterium HTCC2181] gi|118440380|gb|EAV47007.1| GTPase [Methylophilales bacterium HTCC2181] Length = 294 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 154/288 (53%), Gaps = 5/288 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 ++ G +A+VG N GKSTL+N FVG K+SI + K QTTR + GI S +Q +F+DTPG Sbjct: 5 TKCGTIAIVGQPNVGKSTLLNYFVGTKLSITSRKAQTTRYQLLGIHSSPNTQYIFVDTPG 64 Query: 80 I-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + ++ + + +K D++ +++ + ++ L + + ++L +N Sbjct: 65 YQLKHLNMLNRGLNKTVQQALKEVDVILFLIEPGVLDQTDLKIL--SMIPGETPVVLAIN 122 Query: 139 KIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D +K + +LL + + + + S K + + ++ L LP +++ D+ Sbjct: 123 KVDLLKDKNKLLGYIKELDGIGRFQSIVPTSVKKSNNLEPLMQALKPFLPEQEFIFKEDE 182 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++D AEI REK+F +E+PYS V EK+E DG I I V+R + K Sbjct: 183 LTDKNERFLAAEIVREKVFRLTGQELPYSIAVEIEKFEH-VDGIRRIFAAIIVDRDTHKP 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++GKNG+ +K IS ++ ++ ++ V L ++VKVQK W D + Sbjct: 242 MIIGKNGKRLKEISTTSRMDMEKLFGSKVWLEIWVKVQKGWADDQRAL 289 >gi|253996999|ref|YP_003049063.1| GTP-binding protein Era [Methylotenera mobilis JLW8] gi|253983678|gb|ACT48536.1| GTP-binding protein Era [Methylotenera mobilis JLW8] Length = 310 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 161/299 (53%), Gaps = 29/299 (9%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G VA+VG N GKSTL+N +G K++I + K QTTR + GI + ++Q +F+DTPG Sbjct: 22 KCGTVAIVGRPNVGKSTLLNHILGMKLAITSRKAQTTRHRLLGIHTTDDTQYLFVDTPG- 80 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F K ++ +K + + + D+V V++ + L +L+ ++ ++ IL++N Sbjct: 81 FQQKHLNALNKGLNKTVTQVLTEVDVVLFVIEPMK-LGDADRKVLQLLSDKTPT-ILVVN 138 Query: 139 KIDCVKPERLLEQAEIANKLVFIE---------KTFMVSATKGHGCDDVLNYLCSTLPLA 189 K+D + + N L I+ + VSA K D++L + + LP Sbjct: 139 KLDLM--------GDKGNILPLIQDFDLEFPFSEIVPVSAKKSLNLDELLKSIRTYLPEQ 190 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV-- 247 +YS D+++D AE+ REK+F L EIPYS V EK+E +R++ Sbjct: 191 EAIYSEDELTDKNERFLAAELVREKIFRLLGDEIPYSVAVEVEKFEVVGK----LRRIFC 246 Query: 248 -IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I V++ SQK +++GKNG+ +K IS EA++++ ++ V+L +VKV+ W D + Sbjct: 247 AIIVDKDSQKPMLIGKNGEKLKQISTEARQDMEKLFGGKVYLETWVKVKGGWADDARAL 305 >gi|148652187|ref|YP_001279280.1| GTP-binding protein Era [Psychrobacter sp. PRwf-1] gi|148571271|gb|ABQ93330.1| GTP-binding protein Era [Psychrobacter sp. PRwf-1] Length = 339 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 163/316 (51%), Gaps = 23/316 (7%) Query: 7 TFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 +FF + +D R+G VA+VG N GKSTL+N +G K+SI + K QTTR + GI+S Sbjct: 25 SFFGDDNALPED-YRAGYVAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGILS 83 Query: 67 EKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVV--DSHRELKVNIHDL- 122 ++ Q VF+DTPGI N ++ M + ++S + D+V VV D RE DL Sbjct: 84 HEDMQAVFVDTPGIHSNEVRLINERMNKAAFSALVDVDLVLFVVDGDQWRE-----DDLL 138 Query: 123 -LKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 L++I + + ++L++NK D +K + +L E ++ VSA K + + Sbjct: 139 TLEKIGETDTPVVLVINKADTIKDKGSILPLIETYHENFDFADIVPVSALKNQNLERLQQ 198 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE---- 236 + S LP +Y +QI+D +EI REK+ E+PY V +++++ Sbjct: 199 VIRSHLPQGAPIYDTEQITDRSERFLASEIIREKIMRQSGDEVPYDLTVQIDEFKDEPAH 258 Query: 237 -------KKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLI 289 K+ I I+VER QK I++G G IK + A++++ + E+ + L Sbjct: 259 IDPKTGRKRKAVTFIDATIFVERNGQKAIIIGDKGSRIKQVGTAAREDMEALFERKIMLN 318 Query: 290 LFVKVQKDWGHDPKCC 305 L+VKV++ W D + Sbjct: 319 LWVKVKQGWSDDARAL 334 >gi|298346303|ref|YP_003718990.1| GTP-binding protein Era family protein [Mobiluncus curtisii ATCC 43063] gi|298236364|gb|ADI67496.1| GTP-binding protein Era family protein [Mobiluncus curtisii ATCC 43063] Length = 350 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 151/299 (50%), Gaps = 7/299 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D+ +D R+G A++G N GKSTL+N VG K++I + + +TTR + RGIV + Q+ Sbjct: 48 RDWPED-FRAGFAAVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQL 106 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS- 131 + +DTPGI + + + + D+ V + + + +++ K + Sbjct: 107 ILVDTPGIHRPRTLLGQRLNDMVDDAFSEVDVAVFCVPADQPIGPGDRRIVETQLKTAHF 166 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 I ++ K D E++ EQ ++L + +SA +G +++ L LPL+P Sbjct: 167 PAIAVVTKTDAASREQIAEQLLAVSQLHDFAEIVPISAHQGTQVQTLIDLLGQRLPLSPP 226 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSIL-IRQ 246 +Y DQ++D +E+ RE L +E+P+S V E + DG I Sbjct: 227 LYPRDQVTDEDDTAMISELIREAALESLSQELPHSLAVQVEEIIKQPGRSGDGEFWKIHV 286 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++VER SQK I++G+ G +K I +A+ +I ++ V+L L V+ K+W +PK Sbjct: 287 NLFVERDSQKAIVIGRKGARLKEIGTKARPQIESLVGHHVYLDLHVRTAKEWQRNPKML 345 >gi|172041010|ref|YP_001800724.1| GTP-binding protein Era [Corynebacterium urealyticum DSM 7109] gi|171852314|emb|CAQ05290.1| putative GTP-binding protein [Corynebacterium urealyticum DSM 7109] Length = 346 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 152/295 (51%), Gaps = 12/295 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+ VG N GKSTL N VG K++I + +TTR +RG+V ++QIV +DTPG+ Sbjct: 47 RSGFVSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGLVHRPKAQIVVVDTPGL 106 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILIL 137 + + + + T D++C+ V + ++ I + ++++A + L+ I+ Sbjct: 107 HRPRTLLGERLNDVVKETYVDMDLICVCVPADEKIGPGDRWIVENVRQVAPKVP-LMGIV 165 Query: 138 NKIDCVKPERLLEQ-----AEIANKLVFIE-KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 K D V +R+ +Q A + L E +SA G D +++ + LP P Sbjct: 166 TKTDKVSKDRVGQQLLGLHAMLTEALDGAEVDVVPLSAQDGFQLDTLVDVIAEKLPEGPK 225 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSILIRQVIY 249 Y D ++D AE+ RE L E+P+S V ++ ++G + + VIY Sbjct: 226 FYPDDHVTDDDTETRIAELIREAALSGLEHELPHSVAVKVDEILPSPTREGVLNVHAVIY 285 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 VER QK I+ G+N + + I ++ +I E+L Q ++L + +KV K+W DPK Sbjct: 286 VEREGQKAILRGRNNRRLSRIVHNSRLQIIEMLGQNIYLDVRLKVAKNWQSDPKA 340 >gi|154148623|ref|YP_001406618.1| GTP-binding protein Era [Campylobacter hominis ATCC BAA-381] gi|189037255|sp|A7I277|ERA_CAMHC RecName: Full=GTPase Era gi|153804632|gb|ABS51639.1| GTP-binding protein Era [Campylobacter hominis ATCC BAA-381] Length = 289 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 158/285 (55%), Gaps = 11/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+L+G TNAGKS+L+N VG ++++V+HK+ TR + GI E QI+F+DTPG+ Sbjct: 2 KSGFVSLIGRTNAGKSSLLNFLVGERLAMVSHKINATRRKINGIAMFGEDQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ +KLMI ++ +I AD+V + H + + + + LK IAKR ILIL K Sbjct: 62 HKSEKIMNKLMIDVAIKSIGDADLVLFLASIHDDTR-DYEEFLK-IAKRPPH-ILILTKT 118 Query: 141 DCVK----PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D ++L E A+ + I V+ K ++L + LP + + Sbjct: 119 DETDDGKIAKKLGEYAKFCKEFCAI---IPVNIKKKVYRAEILREIAKLLPEHEYFFDPQ 175 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 IS+ + + E ++ + EIPY+S V+ EK EK+ + + ++I + S K Sbjct: 176 IISNTNLRDIYRDFILESVYESVSSEIPYNSDVLIEKITEKEQITKISAKII-TDTNSHK 234 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +I++GK G+ IK I ++++K I++ + +HL L + V+K W +D Sbjct: 235 QILIGKGGETIKRIGIKSRKRISDFSKVKIHLNLQIFVKKGWKND 279 >gi|30250250|ref|NP_842320.1| GTP-binding protein Era [Nitrosomonas europaea ATCC 19718] gi|81838662|sp|Q82SJ6|ERA_NITEU RecName: Full=GTPase Era gi|30181045|emb|CAD86235.1| Type 2 KH domain [Nitrosomonas europaea ATCC 19718] Length = 296 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 166/292 (56%), Gaps = 23/292 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G +++VG N GKSTL+N + K+SI + K QTTR + GI+++ +SQ +F+DTPG Sbjct: 7 KTGYISIVGRPNVGKSTLLNHLIKQKISITSRKAQTTRHRIHGILTDAQSQFIFVDTPGF 66 Query: 81 FNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +++M R+ +++ D+V VV++ R + + L E R+ ++L++NK Sbjct: 67 QTRHRSQLNQVMNRVVLQSMQDVDVVVFVVEAGRFGREDEQVL--EQLPRNLPVVLVINK 124 Query: 140 IDCVKPERLLEQAEIANKLVFIEKT---------FMVSATKGHGCDDVLNYLCSTLPLAP 190 ID + P++L L F++K VSA + ++ + LP P Sbjct: 125 IDLL-PDKL-------QLLPFMQKMADVFEFSAIVPVSALQNRQLSALIEAIRQHLPGNP 176 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIY 249 ++++ D+I+D AE+ REK+F + +E+PYS VV E++ +G++ I I Sbjct: 177 FLFAEDEITDRSERFLAAELLREKVFRQIGEEVPYSVSVVIEQF--TVEGNLRRIHACIL 234 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER +QK I++GK G+ +K ++ +A+K++ + V+L ++VKV+ W D Sbjct: 235 VERENQKAIIIGKQGKKLKDMATQARKDMEMLFGSKVYLEVWVKVKSGWADD 286 >gi|212716036|ref|ZP_03324164.1| hypothetical protein BIFCAT_00948 [Bifidobacterium catenulatum DSM 16992] gi|212661403|gb|EEB21978.1| hypothetical protein BIFCAT_00948 [Bifidobacterium catenulatum DSM 16992] Length = 332 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 146/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ +QIV +DTPGI Sbjct: 23 RSGFVAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGI 82 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSS---- 131 + + + + ++ D + ++ +E+ +L + KR Sbjct: 83 HRPRTLLGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDRRILSRLRSDFAVKRDDGTFK 142 Query: 132 ---RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + E L+ + N+ VSA K +V N L +P Sbjct: 143 WKVPLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHDNLAEVKNVLIENMPE 202 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK--------DG 240 P +Y A+QI++ AE+ R L E+P+S VV + E + DG Sbjct: 203 GPQMYPAEQITEERPEETIAELVRGAFLEELDDELPHSLAVVVDSIEYPEDNDSGAAYDG 262 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++G+ +++ + + + + I+ Q L L VKV K W Sbjct: 263 KAHVIVSIYVERDSQKPIIIGRGAEHLVRVKKKLRTPVNRIVGQKAKLDLHVKVAKGWQS 322 Query: 301 DPK 303 DPK Sbjct: 323 DPK 325 >gi|330837425|ref|YP_004412066.1| GTP-binding protein Era-like-protein [Spirochaeta coccoides DSM 17374] gi|329749328|gb|AEC02684.1| GTP-binding protein Era-like-protein [Spirochaeta coccoides DSM 17374] Length = 294 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 148/284 (52%), Gaps = 7/284 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 V ++G +AGKSTLVN AKVSI QTTR+ ++GI ++ Q+VF DTPG Sbjct: 4 ATVTIIGRPSAGKSTLVNTICEAKVSITARTPQTTRNAIKGIYTDSRGQLVFTDTPGYHT 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNK 139 + ++K + ++ S ++ +DI+ V+D+ R E + I LL +I K + +I +NK Sbjct: 64 SDKQFNKRLQDVALSALEDSDIILYVIDASRQPGEEEEAIAGLLSKITK--TPVICGINK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + + K + SA + G D++L L S P + +Y + + Sbjct: 122 ADILTEIQKETATSFLQKQLPASPVLTFSAQEDTGIDELLITLFSHAPESEPLYPEETFT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE-EKKDGSILIRQVIYVERPSQKKI 258 D P+ AEI REK +E+P+S V E +++ + +R I VER SQK + Sbjct: 182 DQPLEFRIAEIIREKAIRLSREELPHSIFVEVSDLEYNEEESKVWVRAFINVERESQKGM 241 Query: 259 MLGKNGQNIKTISLEAKKEIAEIL-EQPVHLILFVKVQKDWGHD 301 ++GK G NIK I E+ K+I +I + + + L VK Q+ W D Sbjct: 242 VVGKGGDNIKKIRKESFKDIKKIFPDLQLTIDLRVKTQEKWRQD 285 >gi|315654892|ref|ZP_07907797.1| GTP-binding protein Era [Mobiluncus curtisii ATCC 51333] gi|315490853|gb|EFU80473.1| GTP-binding protein Era [Mobiluncus curtisii ATCC 51333] Length = 350 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 146/291 (50%), Gaps = 6/291 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G A++G N GKSTL+N VG K++I + + +TTR + RGIV + Q++ +DTPGI Sbjct: 55 RAGFAAVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVDTPGI 114 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 + + + + D+ V + + + +++ K + I ++ K Sbjct: 115 HRPRTLLGQRLNDMVDDAFSEVDVAVFCVPADQPIGPGDRRIVETQLKTAHFPAIAVVTK 174 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D E++ EQ ++L + +SA +G +++ L LPL+P +Y DQ++ Sbjct: 175 TDAASREQIAEQLLAVSQLHDFAEIVPISAHQGTQVQTLVDLLGQRLPLSPPLYPRDQVT 234 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE----KWEEKKDGSIL-IRQVIYVERPS 254 D +E+ RE L +E+P+S V E + DG I ++VER S Sbjct: 235 DEDDTAMISELIREAALESLSQELPHSLAVQVEEIIKQPGRSGDGEFWKIHVNLFVERDS 294 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G+ G +K I +A+ +I ++ V+L L V+ K+W +PK Sbjct: 295 QKAIVIGRKGARLKEIGTKARPQIESLVGHHVYLDLHVRTAKEWQRNPKML 345 >gi|209517221|ref|ZP_03266066.1| GTP-binding protein Era [Burkholderia sp. H160] gi|209502357|gb|EEA02368.1| GTP-binding protein Era [Burkholderia sp. H160] Length = 287 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 152/285 (53%), Gaps = 15/285 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+N VG KVSI + K QTTR + GI + +++Q +F+DTPG F Sbjct: 1 MVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLEDAQYIFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K S ++ + R ST+ D + V+++ R + +L I + L LI NK+D Sbjct: 60 KHSGALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPAKVPTL-LIANKLD 117 Query: 142 CVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW---VYSADQ 197 V + L + + L + +SA DD+ + + P P +Y D Sbjct: 118 RVSDKDSLFPFMQQMSTLREFNEIVPLSA---KNTDDIKRLMATIKPFLPEGEPIYGEDD 174 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+E +G + I I V+R + K Sbjct: 175 LTDRSERFLAAEILREKVFRWTGDELPYTSTVLIDKFE--TEGRLRRIFATILVDRDTHK 232 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++G+ G +K IS EA+ ++A++ + PV+L FVKV+ W + Sbjct: 233 AMIIGQKGAKLKQISTEARLDMAKLFDGPVYLETFVKVKSGWADN 277 >gi|70728454|ref|YP_258203.1| GTP-binding protein Era [Pseudomonas fluorescens Pf-5] gi|123657841|sp|Q4KHT0|ERA_PSEF5 RecName: Full=GTPase Era gi|68342753|gb|AAY90359.1| GTP-binding protein Era [Pseudomonas fluorescens Pf-5] Length = 300 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 159/294 (54%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAIQAIYVDTPG 66 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + + + ++ M + + + +K D+V VVD + + +L+ + +IL +N Sbjct: 67 MHKSNEKALNRYMNKTASAALKDVDVVIFVVDRTKWTDED-QLVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ ++AE+ L ++++ VSA +GH + + + LP Sbjct: 126 KTD-----RIEDKAELMPHLTWLQEQLPNAEIVPVSAQQGHNLEALEGLIAKHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGKTLHIHALIIVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G+ IK I +EA+K++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGERIKRIGMEARKDMELLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|167626235|ref|YP_001676735.1| GTP-binding protein Era [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596236|gb|ABZ86234.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 297 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 158/289 (54%), Gaps = 10/289 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G ++++G N GKSTL+N + K+SI + K QTTR + GI + ++Q +++DTPGI Sbjct: 5 GYISIIGRPNVGKSTLLNNILKYKISITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHI 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILILNK 139 + + +K M + + + +K D++ VV+ + EL+ NI + LK + L++NK Sbjct: 65 DEPKAINKFMNKAATAMVKEVDVILFVVELGKWTELEDNIVEKLKH---SQVPIFLVVNK 121 Query: 140 IDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSADQ 197 +D K E + I KL F + + VSA +GH +++ + + LP + + Y DQ Sbjct: 122 VDKKKSLEASMFIESIKEKLSFYDVIY-VSAKQGHNVNELESRIEKLLPESEYFFYEDDQ 180 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 I+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER SQK Sbjct: 181 ITDRSIKFMVAEIIREKIMRTIGNEVPYQITVEIDSYKVDQEKNIVDIYASILVERDSQK 240 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 241 GIVIGAKGTKLKKIGTDSRIDIERLVGMKVNLKTHVKVKSGWSDDERAL 289 >gi|330811509|ref|YP_004355971.1| GTP-binding protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379617|gb|AEA70967.1| Conserved hypothetical protein; putative GTP-binding protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 300 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 158/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + + ++ M + + + +K D+V VVD + + + +L+ + + LI+ LN Sbjct: 67 MHKGGEKALNRYMNKTASAALKDVDVVIFVVDRTKWTEED-QMVLERVQYVTGPLIVALN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ ++AE+ L ++++ +SA GH D + + LP Sbjct: 126 KTD-----RIEDKAELMPHLTWLQEQLPNAQIIPISAQHGHNLDALERVIAEHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ + E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQMGAELPYQITVEIEEF--KQQGKTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G+ IK I EA+K++ + + + L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGERIKRIGTEARKDMELLFDSKIMLNLWVKVKGGWSDDERAL 292 >gi|325926993|ref|ZP_08188268.1| GTP-binding protein Era [Xanthomonas perforans 91-118] gi|325542652|gb|EGD14119.1| GTP-binding protein Era [Xanthomonas perforans 91-118] Length = 285 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 152/287 (52%), Gaps = 16/287 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKD 85 ++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ K Sbjct: 1 MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKR 60 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 + +++M R + +++ D LV+++ R D +A R + + K Sbjct: 61 AMNRVMNRAARGSLEGVDAAVLVIEAGR------WDEEDTLAFRVLSDAGVPVVLVVNKV 114 Query: 146 ERLLEQAEIANKLVFIE--KTFM----VSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +RL ++ + L + +TF VSA K G D ++ L +P A ++ D+I+ Sbjct: 115 DRLKDKTALFPFLAQVSEGRTFAAVHPVSALKRKGLDALVGDLLKLVPEAEAMFGEDEIT 174 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D E+ RE+L L +E+PY++ V E++ E DG++L I VI+VER QK I Sbjct: 175 DRSQRFLAGELVREQLMRQLGEELPYATTVEIERFAE--DGALLRIGAVIWVEREGQKAI 232 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++GK G +K I +A+ ++ + V L +V+V++ W D Sbjct: 233 VIGKGGTRLKEIGGKARLQMERLFGAKVFLETWVRVREGWSDDEAAL 279 >gi|224418108|ref|ZP_03656114.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491] gi|253827435|ref|ZP_04870320.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491] gi|313141643|ref|ZP_07803836.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491] gi|253510841|gb|EES89500.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491] gi|313130674|gb|EFR48291.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491] Length = 294 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 147/288 (51%), Gaps = 3/288 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR+G VA++G NAGKST +N +G ++++V+HK TR + ++ ++E+QIVF+DTPG Sbjct: 3 SRAGFVAVLGRPNAGKSTFLNALLGERLALVSHKANATRKRMNLVLMQEEAQIVFVDTPG 62 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + ++ M++ + ++ D++ + K++ ++ + AK L+L+ Sbjct: 63 IHKQEKLLNQYMLKEAMQAMQDCDLLLFLAPVSD--KIDFYEEFLQSAKNKPHLLLLTKS 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +K E + E + + +S + V+ + +P P+ Y + +S Sbjct: 121 DSVIKEELFCKMQEYQKYQNYYQALIPISYKDLNSLKSVVRKIAEMMPPNPYYYDPEILS 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 E+ RE F +L E+PY S V+ ++EK+D I+ I + SQK ++ Sbjct: 181 PNSTKEIVKEMIRESCFENLSDELPYESDVMVNLYQEKRDLDY-IKATIITHKESQKAMV 239 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 +GK G+ +K I A+++I + + + V+L L VKV W + Q Sbjct: 240 IGKEGKTLKRIGKSAREKIEKFINKKVYLELLVKVMPGWSKQKESLKQ 287 >gi|257126292|ref|YP_003164406.1| GTP-binding protein Era [Leptotrichia buccalis C-1013-b] gi|257050231|gb|ACV39415.1| GTP-binding protein Era [Leptotrichia buccalis C-1013-b] Length = 293 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/271 (32%), Positives = 145/271 (53%), Gaps = 8/271 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + +VG N GKSTL+N+ V KV+IV+ K TTR ++GIV+ ESQ +F+DTPGI Sbjct: 2 KSGFITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M ++ +++ D++ ++D +E+ + + + ++ ++L++NKI Sbjct: 62 HKPKHLLGEHMTNVALEALENVDLIMFMLDGTQEISTGDMFVNENVRSVNTPIVLVINKI 121 Query: 141 D-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D E ++ EI KL ++ ++A G + L W Y D + Sbjct: 122 DRMTDEEIEEKKKEIREKLGEFDEIITLTAEYAIGIHKIFEVAEKYLSNDVWFYPEDYYT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IYVERPSQK 256 DLP+ E REK+ H EIP+S V E K IR+ IYVER SQK Sbjct: 182 DLPVNKIVVETVREKILHHTKDEIPHSVAVEIINVETKP----AIRKYDINIYVERDSQK 237 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVH 287 I++GK+G +K I +EA++EI +++ V+ Sbjct: 238 GIIIGKDGTMLKKIGIEARREIEHLIDLKVN 268 >gi|296273943|ref|YP_003656574.1| GTP-binding protein Era [Arcobacter nitrofigilis DSM 7299] gi|296098117|gb|ADG94067.1| GTP-binding protein Era [Arcobacter nitrofigilis DSM 7299] Length = 293 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 154/283 (54%), Gaps = 10/283 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 ++ G V++VG NAGKS+L+N VG K+++V+HK TR IV ++ Q++F+DTPG Sbjct: 2 TKCGYVSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFVDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + ++ M+ + + D++ + ++K LLK K++++ IL+L K Sbjct: 62 IHETEKLLNQFMLDEALKAMGDCDLILFLAPVTDQVKYYEEFLLKN--KKNTKHILLLTK 119 Query: 140 IDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ID V E +L E + ++K E VS K D+L+ + LP P+++ Sbjct: 120 IDFVSNEEVLAKMKEYEKFSDKY---ESIIPVSIKKATTHADILDVVVKYLPEHPYLFDP 176 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 + ++ + E RE +F ++ EIPY + V+ K EEKK+ + I+ I V++ +Q Sbjct: 177 EILTTEHLRDIFKEFIRESIFENISDEIPYETDVLINKVEEKKNVDV-IKATIIVQKSTQ 235 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K +++GK IK I +A+ +I ++ + L LFV ++K W Sbjct: 236 KGMIIGKGATAIKRIGKDARVKIEKLTGKKCFLELFVSIKKGW 278 >gi|208779800|ref|ZP_03247144.1| GTP-binding protein Era [Francisella novicida FTG] gi|254373099|ref|ZP_04988588.1| hypothetical protein FTCG_00677 [Francisella tularensis subsp. novicida GA99-3549] gi|151570826|gb|EDN36480.1| hypothetical protein FTCG_00677 [Francisella novicida GA99-3549] gi|208744255|gb|EDZ90555.1| GTP-binding protein Era [Francisella novicida FTG] Length = 297 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 158/291 (54%), Gaps = 14/291 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G ++++G N GKSTL+N + KVSI + K QTTR + GI + ++Q +++DTPGI Sbjct: 5 GYISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHI 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLK--EIAKRSSRLILIL 137 + +K M + + + K D++ VV+ + EL+ NI + LK EI + L++ Sbjct: 65 KEPKAINKFMNKAATTMFKEVDVILFVVEMGKWTELEDNIVEKLKHSEIP-----IFLVV 119 Query: 138 NKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSA 195 NK+D K E + I KL F + + VSA +GH +++ + + LP + + Y Sbjct: 120 NKVDKKKSLEAAMFIESIKEKLSFYDVIY-VSAKQGHNINELESRIEKLLPESEYFFYEE 178 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQI+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER S Sbjct: 179 DQITDRSIKFMVAEIIREKIMRTIGSEVPYQIAVEIDSYKVDQEKNIVDIYASILVERDS 238 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 239 QKGIVIGAKGAKLKKIGTDSRIDIERLVGMQVNLKTHVKVKSGWSDDDRAL 289 >gi|223040645|ref|ZP_03610915.1| GTP-binding protein Era [Campylobacter rectus RM3267] gi|222878103|gb|EEF13214.1| GTP-binding protein Era [Campylobacter rectus RM3267] Length = 293 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 154/287 (53%), Gaps = 11/287 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKS+L+N +GAK++IV+HK TR + GIV E QIVF DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSSLLNCLLGAKITIVSHKQNATRRKISGIVMNGEDQIVFTDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNK 139 + + +KLMI + ++ D + + H + + D +K + + IL+L K Sbjct: 62 HESNKTLNKLMISEAIKSMGDCDAIVFLAPIHDD----VDDYIKFLNLNPQKPHILVLTK 117 Query: 140 IDCVKPERLLEQAEIANKLVFIEK---TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +D V ++LE+ IA F +K SA K +L+ +C LP Y + Sbjct: 118 VDEVSNAKVLEK--IARYQKFQDKFAALLPFSAKKQTYKKPLLDEICKLLPEHEHFYDPE 175 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++ E E L+ +L EIPYS+ V+ +K +EK + + I I ER K Sbjct: 176 FLTPTNEKEIFREFILEALYDNLSDEIPYSTDVLIDKVKEKPEIT-EIYATIITEREIHK 234 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++GKNGQ +K I + ++K I+ E+ + + L V V+KDW D K Sbjct: 235 SIIIGKNGQTVKRIGINSRKLISNFTERKILVKLVVVVKKDWCKDEK 281 >gi|94311353|ref|YP_584563.1| GTP-binding protein Era [Cupriavidus metallidurans CH34] gi|93355205|gb|ABF09294.1| membrane-associated, 16S rRNA-binding GTPase [Cupriavidus metallidurans CH34] Length = 312 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 153/290 (52%), Gaps = 17/290 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF DTPG Sbjct: 21 RCGTVAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDTQYVFADTPG- 79 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + + ++ + R ST+ DIV VV++ + +L + K ++L+ N Sbjct: 80 FQTRHASALNRSLNRAVTSTLSSVDIVLFVVEAGY-FGPDDEKVLSLLPKNVP-VLLVCN 137 Query: 139 KIDCVKPER------LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 K+D + R LEQ + + F E M + T+ H +L + LP + Sbjct: 138 KLDRIGEGRSEVMMPFLEQ--MGQRFPFREVVPMSAKTRDH-IQRLLAIIRPYLPEGEPM 194 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVE 251 Y D ++D +EI REK+F E+PY+S VV +K+E +G + I I VE Sbjct: 195 YDVDAMTDRSERFLASEIIREKVFRWTGDELPYTSTVVIDKFE--TEGRLRRIFATILVE 252 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 R + K +++G G +K IS EA+ ++ ++ + V+L +++KV+ W + Sbjct: 253 RDAHKAMIIGNKGAKLKQISTEARLDMEKLFDGKVYLEMWIKVKSGWADN 302 >gi|118497735|ref|YP_898785.1| GTP-binding protein Era [Francisella tularensis subsp. novicida U112] gi|194323707|ref|ZP_03057483.1| GTP-binding protein Era [Francisella tularensis subsp. novicida FTE] gi|118423641|gb|ABK90031.1| GTP-binding protein [Francisella novicida U112] gi|194322071|gb|EDX19553.1| GTP-binding protein Era [Francisella tularensis subsp. novicida FTE] Length = 297 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 159/293 (54%), Gaps = 14/293 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G ++++G N GKSTL+N + KVSI + K QTTR + GI + ++Q +++DTPGI Sbjct: 3 KCGYISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGI 62 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLK--EIAKRSSRLIL 135 + +K M + + + K D++ VV+ + EL+ NI + LK EI + L Sbjct: 63 HIKEPKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIP-----IFL 117 Query: 136 ILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VY 193 ++NK+D K E + I KL F + + VSA +GH +++ + + LP + + Y Sbjct: 118 VVNKVDKKKSLEAAMFIESIKEKLSFYDVIY-VSAKQGHNINELESRIEKLLPESEYFFY 176 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 DQI+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER Sbjct: 177 EEDQITDRSIKFMVAEIIREKILRTIGSEVPYQIAVEIDSYKVDQEKNIVDIYASILVER 236 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 SQK I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 237 DSQKGIVIGAKGAKLKKIGTDSRIDIERLVGMQVNLKTHVKVKNGWSDDDRAL 289 >gi|332184229|gb|AEE26483.1| GTP-binding protein Era [Francisella cf. novicida 3523] Length = 297 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 161/294 (54%), Gaps = 20/294 (6%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G ++++G N GKSTL+N + KVSI + K QTTR + GI + ++Q +++DTPGI Sbjct: 5 GYISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTVGDTQFIYVDTPGIHI 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLK--EIAKRSSRLILIL 137 + +K M + + + +K D++ VV+ + EL+ NI + LK EI + L++ Sbjct: 65 KEPKAINKFMNKAATTMVKDVDVILFVVEMGKWTELEDNIVEKLKHSEIP-----IFLVV 119 Query: 138 NKIDCVKPERLLEQA----EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-V 192 NK+D ++ LE A I KL F + + VSA +GH +++ + + LP + + Sbjct: 120 NKVD---KKKSLEAAIFIESIKEKLSFYDVIY-VSAKQGHNINELESRIEKLLPESEYFF 175 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 Y DQI+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VE Sbjct: 176 YEEDQITDRSIKFMVAEIIREKIMRTIGSEVPYQITVEIDSYKVDQEKNIVDIYASILVE 235 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R SQK I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 236 RESQKGIVIGAKGVKLKKIGTDSRIDIERLVGMQVNLKTHVKVKSGWSDDERAL 289 >gi|149374708|ref|ZP_01892482.1| GTP-binding protein Era [Marinobacter algicola DG893] gi|149361411|gb|EDM49861.1| GTP-binding protein Era [Marinobacter algicola DG893] Length = 305 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 158/291 (54%), Gaps = 10/291 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +SR G VA+VG N GKSTL+N +G K+SI + K QTTR V GI +E Q +++DTP Sbjct: 11 DSRCGFVAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRHQVLGIKTEGPVQAIYVDTP 70 Query: 79 GIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLIL 135 G+ + + ++ M + + S +K + V ++ D +L++++ +IL Sbjct: 71 GMHEEEPRAINRYMNKAATSALKDV---DVAVFVVDQMAWTTADEMVLEKLSSLKCPVIL 127 Query: 136 ILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D ++ E LL ++ ++ + +SA KG + + + + LP + Y Sbjct: 128 AVNKVDRIENREALLPHLDMLSRKREFAEIIPLSALKGMNLEPLESAVNRFLPESVHFYP 187 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 DQI+D +E+ REK+ L E+PYS V E++ +KDG L I +I VER Sbjct: 188 DDQITDRSERFMASEMVREKITRQLGAELPYSVAVEIEEF--RKDGKTLHISALILVERE 245 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKKI++G G+ ++ I EA+ ++ + + V L L+VKV++ W + Sbjct: 246 GQKKIIIGDKGERLRRIGQEARTDMERLFDSKVMLRLWVKVKRGWADSDRA 296 >gi|148988412|ref|ZP_01819859.1| GTP-binding protein Era [Streptococcus pneumoniae SP6-BS73] gi|147926093|gb|EDK77167.1| GTP-binding protein Era [Streptococcus pneumoniae SP6-BS73] Length = 245 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 138/241 (57%), Gaps = 7/241 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 K + M+ ++ST++ D V +V + E + D++ E K + +IL++NK Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPAD-EARGKGDDMIIERLKAAKVPVILVVNK 122 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V P++LL Q + N++ F E +SA +G+ +++ L L + +DQI Sbjct: 123 IDKVHPDQLLSQIDDFRNQMDFKE-IVPISALQGNNVSRLVDILSENLDEGFQYFPSDQI 181 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERPSQK 256 +D P +E+ REK+ +EIP+S VV + K +E+ D + IR I VER K Sbjct: 182 TDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETD-KVHIRATIMVERDRPK 240 Query: 257 K 257 + Sbjct: 241 R 241 >gi|62259927|gb|AAX77873.1| unknown protein [synthetic construct] Length = 332 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 159/293 (54%), Gaps = 14/293 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G ++++G N GKSTL+N + KVSI + K QTTR + GI + ++Q +++DTPGI Sbjct: 29 KCGYISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGI 88 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLK--EIAKRSSRLIL 135 + +K M + + + K D++ VV+ + EL+ NI + LK EI + L Sbjct: 89 HIKEPKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIP-----IFL 143 Query: 136 ILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VY 193 ++NK+D K E + I KL F + + VSA +GH +++ + + LP + + Y Sbjct: 144 VVNKVDKKKSLEAAMFIESIKEKLSFYDVIY-VSAKQGHNINELESRIEKLLPESEYFFY 202 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 DQI+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER Sbjct: 203 EEDQITDRSIKFMVAEIIREKIMRTIGSEVPYQIAVEIDSYKVDQEKNIVYIYASILVER 262 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 SQK I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 263 DSQKGIVIGAKGAKLKKIGTDSRIDIERLVGMQVNLKTHVKVKSGWSDDDRAL 315 >gi|302335754|ref|YP_003800961.1| GTP-binding protein Era [Olsenella uli DSM 7084] gi|301319594|gb|ADK68081.1| GTP-binding protein Era [Olsenella uli DSM 7084] Length = 312 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 146/282 (51%), Gaps = 1/282 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VALVG + GKSTL+N K++I + QTTR +R ++ + SQ+V +DTPG+ Sbjct: 18 RSGFVALVGRPSVGKSTLLNACFKDKIAITSPVAQTTRRRMRATINAEGSQLVIVDTPGL 77 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNK 139 KD+ K + +++ + D V +VD+ + + + + +A + +L++ K Sbjct: 78 HKPKDALGKELNKVALGELADVDAVAFLVDATKPVGRGDEWVARHVAASHAPFKLLVVTK 137 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D E + Q A+ L + +VS+ +G D ++ + + LP P + + Sbjct: 138 ADLASSELITSQLAAASALADFDDALVVSSKEGFNVDGFVSLVSAHLPEGPRWFPEGMDT 197 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D+ AE REK+ L++ +E+P+S V+ + KDG I I VER QK ++ Sbjct: 198 DMSDEDLVAEFIREKVLLNMRQEVPHSVGVLCDDIVWAKDGHASITATIIVEREGQKGMV 257 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G G+ IK I +A++++ +L L + V+V+ W D Sbjct: 258 IGGGGRMIKRIGTQARRDVERLLGCACFLDIQVRVRPAWRRD 299 >gi|240047402|ref|YP_002960790.1| GTP-binding protein Era [Mycoplasma conjunctivae HRC/581] gi|239984974|emb|CAT04967.1| GTP-binding protein [Mycoplasma conjunctivae] Length = 292 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 152/286 (53%), Gaps = 1/286 (0%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++ V++VG N+GKS+L+N + VSIV+ K QTTR ++ GI +E QIVF+DTPG Sbjct: 2 AKNCFVSIVGLPNSGKSSLLNTLLDFPVSIVSSKSQTTRDLINGIYNEDNLQIVFVDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++ ++ + ++I+ D+V + + ++ L+++IA ++ I +L K Sbjct: 62 FHKKINNLSNVLNKAVINSIEDIDVVLFLHPVNWKISNQSQQLVEKIANVKNK-IAVLTK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D + ++++E K + +K F S D+L + S + + + I+ Sbjct: 121 LDLIDDQQIIETKVAELKQLGFKKVFGYSTEFKVAKQDLLEEIKSYAYESDLFFEQEDIT 180 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D P F EI R++L L+L +E+P+ S +V E++ E I I +IYV R S I+ Sbjct: 181 DQPARFFAKEIIRKQLLLNLKEEVPHQSAIVIERFSEANPKHIEIDAIIYVGRKSHLPIV 240 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +GKNG + I A+ E+ E+L+ V L VK+ W + K Sbjct: 241 VGKNGTMLGKIGTAARLELEELLQSKVVLKNKVKISPKWFDNKKTI 286 >gi|295677175|ref|YP_003605699.1| GTP-binding protein Era [Burkholderia sp. CCGE1002] gi|295437018|gb|ADG16188.1| GTP-binding protein Era [Burkholderia sp. CCGE1002] Length = 287 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 152/285 (53%), Gaps = 15/285 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+N VG KVSI + K QTTR + GI + +++Q +F+DTPG F Sbjct: 1 MVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLEDAQYIFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S ++ + R ST+ D + V+++ R + +L I + L LI NK+D Sbjct: 60 RHSGALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPAKVPTL-LIANKLD 117 Query: 142 CVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW---VYSADQ 197 V + L + + L + +SA DD+ + + P P +Y D Sbjct: 118 RVSDKDSLFPFMQQMSTLREFNEIVPLSA---KNTDDIKRLMATIKPFLPEGEPIYGEDD 174 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQK 256 ++D AEI REK+F E+PY+S V+ +K+E +G + I I V+R + K Sbjct: 175 LTDRSERFLAAEILREKVFRWTGDELPYTSTVLIDKFE--TEGRLRRIFATILVDRDTHK 232 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++G+ G +K IS EA+ ++A++ + PV+L FVKV+ W + Sbjct: 233 AMIIGQKGAKLKQISTEARLDMAKLFDGPVYLETFVKVKSGWADN 277 >gi|56708234|ref|YP_170130.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis SCHU S4] gi|110670705|ref|YP_667262.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis FSC198] gi|134302151|ref|YP_001122120.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis WY96-3418] gi|224457352|ref|ZP_03665825.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis MA00-2987] gi|254370721|ref|ZP_04986726.1| GTP-binding protein [Francisella tularensis subsp. tularensis FSC033] gi|254875055|ref|ZP_05247765.1| GTP-binding protein era [Francisella tularensis subsp. tularensis MA00-2987] gi|56604726|emb|CAG45797.1| GTP-binding protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321038|emb|CAL09180.1| GTP-binding protein [Francisella tularensis subsp. tularensis FSC198] gi|134049928|gb|ABO46999.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis WY96-3418] gi|151568964|gb|EDN34618.1| GTP-binding protein [Francisella tularensis subsp. tularensis FSC033] gi|254841054|gb|EET19490.1| GTP-binding protein era [Francisella tularensis subsp. tularensis MA00-2987] gi|282159460|gb|ADA78851.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis NE061598] Length = 297 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 158/291 (54%), Gaps = 14/291 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G ++++G N GKSTL+N + KVSI + K QTTR + GI + ++Q +++DTPGI Sbjct: 5 GYISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHI 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLK--EIAKRSSRLILIL 137 + +K M + + + K D++ VV+ + EL+ NI + LK EI + L++ Sbjct: 65 KEPKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIP-----IFLVV 119 Query: 138 NKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSA 195 NK+D K E + I KL F + + VSA +GH +++ + + LP + + Y Sbjct: 120 NKVDKKKSLEAAMFIESIKEKLSFYDVIY-VSAKQGHNINELESRIEKLLPESEYFFYEE 178 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQI+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER S Sbjct: 179 DQITDRSIKFMVAEIIREKIMRTIGSEVPYQIAVEIDSYKVDQEKNIVYIYASILVERDS 238 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 239 QKGIVIGAKGAKLKKIGTDSRIDIERLVGMQVNLKTHVKVKSGWSDDDRAL 289 >gi|238753923|ref|ZP_04615283.1| GTP-binding protein era [Yersinia ruckeri ATCC 29473] gi|238707911|gb|EEQ00269.1| GTP-binding protein era [Yersinia ruckeri ATCC 29473] Length = 279 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 147/275 (53%), Gaps = 13/275 (4%) Query: 38 LVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMIRLSW 96 ++N +G K+SI + K QTTR + GI +E Q +++DTPG+ K + ++LM R + Sbjct: 1 MLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEEKRAINRLMNRAAS 60 Query: 97 STIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE-RLLE 150 S+I ++V VV+ + E+ VN ++ + ++L +NK+D V + +LL Sbjct: 61 SSIGDVELVIFVVEGTNWTADDEMVVN------KLRSLNCPVLLAINKVDNVTDKTKLLP 114 Query: 151 QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEI 210 + ++ + +SA KG D + + + +P A + D I+D +EI Sbjct: 115 HIQFLSQQMKFLDVVPISAEKGMNVDTIASIVRKHMPEAGHHFPEDYITDRSQRFMASEI 174 Query: 211 TREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTI 270 REKL L +E+PYS V E++ + G I +I VER QKK+++G G IKTI Sbjct: 175 IREKLMRFLGEELPYSVTVEIEQFVPNERGGYNIHGLILVEREGQKKMVIGNKGSKIKTI 234 Query: 271 SLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +EA+ ++ ++ + VHL L+VKV+ W D + Sbjct: 235 GIEARHDMEQMFDAKVHLELWVKVKSGWADDERAL 269 >gi|242242840|ref|ZP_04797285.1| GTP-binding protein Era [Staphylococcus epidermidis W23144] gi|242233703|gb|EES36015.1| GTP-binding protein Era [Staphylococcus epidermidis W23144] Length = 208 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 117/204 (57%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G N GKST VNR +G K++I++ K QTTR+ ++G+++ ++QI+F+DTPGI Sbjct: 5 KSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGI 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+R++ +T+ D + +V+ + ++ +++ + + + L+LNKI Sbjct: 65 HKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLVLNKI 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P+ L+ + E + +SA +G D ++ L S LP P Y +QISD Sbjct: 125 DLVHPDTLMPKIEQYQSYMDFTDIIPISALEGMNVDHFIDVLKSFLPEGPKYYPDNQISD 184 Query: 201 LPMFHFTAEITREKLFLHLHKEIP 224 P +EI REK+ +EIP Sbjct: 185 HPEQFVVSEIIREKILHLTSEEIP 208 >gi|119025741|ref|YP_909586.1| GTP-binding protein Era [Bifidobacterium adolescentis ATCC 15703] gi|154487437|ref|ZP_02028844.1| hypothetical protein BIFADO_01289 [Bifidobacterium adolescentis L2-32] gi|118765325|dbj|BAF39504.1| widely conserved GTP-binding protein [Bifidobacterium adolescentis ATCC 15703] gi|154083955|gb|EDN83000.1| hypothetical protein BIFADO_01289 [Bifidobacterium adolescentis L2-32] Length = 332 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 147/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ +QIV +DTPGI Sbjct: 23 RSGFVAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGI 82 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSS---- 131 + + + + ++ D + ++ + +E+ +L + KR Sbjct: 83 HRPRTLLGQRLNDVVDESLSDVDAIAFLLPADQEIGPGDKRILSRLRSDFAVKRDDGTFK 142 Query: 132 ---RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + L+++ N+ VSA + +V N L +P Sbjct: 143 WKVPLIAIVTKIDELDRSALIDKLIEINEFADFTDIVPVSALEHDNLAEVRNVLVENMPE 202 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--------G 240 P +Y A+QI++ AE+ R L E+P+S VV + E +D G Sbjct: 203 GPQMYPAEQITEERPEDTIAELIRGAFLEELDDELPHSLAVVVDSIEYPEDNDSGESYAG 262 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 + IYVER SQK I++G N +++ + + + + I+ Q L L VKV K W Sbjct: 263 KAQVIVSIYVERDSQKPIIIGHNAEHLVRVKKKLRTAVNRIVGQKAKLDLHVKVAKGWQS 322 Query: 301 DPK 303 DPK Sbjct: 323 DPK 325 >gi|193216878|ref|YP_002000120.1| GTP-binding protein Era [Mycoplasma arthritidis 158L3-1] gi|193002201|gb|ACF07416.1| GTP-binding protein Era [Mycoplasma arthritidis 158L3-1] Length = 294 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 145/286 (50%), Gaps = 1/286 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N + VAL+G N GKSTL+N + +++IV+ QTTR ++G ++ E QI+F+DTP Sbjct: 2 NKKVCIVALIGRPNTGKSTLMNHLISYELAIVSKHAQTTRDDIKGFYNDDEYQIIFIDTP 61 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL-IL 137 GI + K + + + +K D+V + ++ + ++K I + L I+ Sbjct: 62 GIHKGESLLSKRLNKRAQDALKDVDLVLFLSPANEVVGKGDEFIIKTIEDAGVKNKLAII 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +K+D V + L++ K + F V D+L + + +Y D Sbjct: 122 SKVDLVDDKTKLDKKAGYLKKMGFASVFGVGKGHDQSYRDLLEIIKTYAKEDEAMYPEDY 181 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ISD+ M EI RE L +E+P+S V + E+ +I IYV++ SQK Sbjct: 182 ISDVSMRFIAKEIIRESAIKRLFQELPHSIAVEITDFIERDKSPYIINGTIYVKKESQKG 241 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++G N IK IS+EA+K++ +I + V L + VK+ +W +D K Sbjct: 242 ILIGHNASMIKEISVEARKKMQQIFDHSVFLKVNVKISNNWVNDEK 287 >gi|296393922|ref|YP_003658806.1| GTP-binding protein Era [Segniliparus rotundus DSM 44985] gi|296181069|gb|ADG97975.1| GTP-binding protein Era [Segniliparus rotundus DSM 44985] Length = 321 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 141/290 (48%), Gaps = 4/290 (1%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 QD RSG V G N GKS+L+N VG +V I + QTTR VR I++ + QIV +D Sbjct: 26 QDGFRSGFVCFAGRPNVGKSSLINALVGEEVMITSAHPQTTRRAVRAIMNAPDHQIVIVD 85 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRLI 134 TPG+ + + + + + D+V V + ++ +L+++ + + +R++ Sbjct: 86 TPGVHRPRTALSERLNDTAAQAFAEVDVVGFCVPADEDIGPGDKFILEQVRREAPKARIV 145 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++ KID R Q + L+ E + VS + L S +P P Y Sbjct: 146 GLVTKIDKRGRGRTAAQLLALSALLGPEHDVVPVSRQSPEQLSALAELLVSLMPQGPPWY 205 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 DQ+ D AE+ RE L +E+P+S VV E+ + KKD ++ V YVER Sbjct: 206 PTDQVVDDSDEARVAELIREAALSRLREELPHSVMVVVEETQRKKDLWVVYASV-YVERS 264 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++G G ++ I A+ I HL L VK+ KDW DPK Sbjct: 265 SQKAIVIGAKGSVLREIGTVARSRIEAAFGVRAHLDLRVKIAKDWQRDPK 314 >gi|242309064|ref|ZP_04808219.1| GTP-binding protein Era [Helicobacter pullorum MIT 98-5489] gi|239524488|gb|EEQ64354.1| GTP-binding protein Era [Helicobacter pullorum MIT 98-5489] Length = 294 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 149/283 (52%), Gaps = 5/283 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S++G VA++G NAGKST +N +G ++++++HK TR + +V +E+QIVF+DTPG Sbjct: 3 SKAGFVAVLGRPNAGKSTFLNTLLGERLALISHKANATRKRMNLVVMVEETQIVFVDTPG 62 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + ++ M++ + ++ D + + + ++ I D L E AK L+L K Sbjct: 63 IHKQEKLLNQYMLKEAMKAMQDCDFLLFLAPASDKIDFYI-DFL-ESAKGKPHF-LLLTK 119 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 IDCV E+L ++ + K + + +S + V L +P P+ Y + + Sbjct: 120 IDCVSKEKLFQKIKEYEKFQDSYQALIPISCKDIKSLEYVAKELAKIMPKNPYYYDPEIL 179 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 S E+ RE F +L E+PY S VV ++EK I+ I V++ SQK + Sbjct: 180 SPNSTKEIVKEMIRESCFENLSDELPYESDVVINVYKEKATLD-YIKASIIVQKESQKAM 238 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ++GK G+ +K I A++ I + + + V+L + VKV W D Sbjct: 239 VIGKEGKTLKRIGKNARERIEQFVRKKVYLEILVKVVSSWSKD 281 >gi|187931573|ref|YP_001891557.1| GTP-binding protein Era [Francisella tularensis subsp. mediasiatica FSC147] gi|187712482|gb|ACD30779.1| GTP-binding protein Era [Francisella tularensis subsp. mediasiatica FSC147] Length = 297 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 159/293 (54%), Gaps = 14/293 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G ++++G N GKSTL+N + KVSI + K QTTR + GI + ++Q +++DTPGI Sbjct: 3 KCGYISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGI 62 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLK--EIAKRSSRLIL 135 + +K M + + + K D++ VV+ + EL+ NI + LK EI + L Sbjct: 63 HIKEPKAINKFMNKAATTMFKDIDVILFVVEMGKWTELEDNIVEKLKHSEIP-----IFL 117 Query: 136 ILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VY 193 ++NK+D K E + I KL F + + VSA +GH +++ + + LP + + Y Sbjct: 118 VVNKVDKKKSLEAAMFIESIKEKLSFYDVIY-VSAKQGHNINELESRIEKLLPESEYFFY 176 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 DQI+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER Sbjct: 177 EEDQITDRSIKFMVAEIIREKIMRTIGSEVPYQIAVEIDSYKVDQEKNIVYIYASILVER 236 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 SQK I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 237 DSQKGIVIGAKGAKLKKIGTDSRIDIERLVGMQVNLKTHVKVKSGWSDDDRAL 289 >gi|319792226|ref|YP_004153866.1| GTP-binding protein era [Variovorax paradoxus EPS] gi|315594689|gb|ADU35755.1| GTP-binding protein Era [Variovorax paradoxus EPS] Length = 322 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 147/293 (50%), Gaps = 22/293 (7%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTL+N VG K+SI + K QTTR + G+ + +Q VF+DTPG Sbjct: 28 GLIAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMRTLGATQFVFVDTPGFQT 87 Query: 83 A-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ +K + + + D++ VV++ + +LK + K +L+ NK+D Sbjct: 88 LHANALNKSLNKTVQGAVGDVDLILFVVEAGSFTPAD-ERVLKLLGK-GIPTVLLANKLD 145 Query: 142 CVKPERLLEQAEIA-------NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 V + +IA K F E M SA + + LP PW Y+ Sbjct: 146 NVH-----RRGDIAPWLQTMQAKHAFAEFVPM-SAKNSKDVERLFGICEKYLPEQPWFYA 199 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE----KKDGSILIR--QVI 248 D+++D E+ REKLF E+PY+S V+ +K+EE KK L+R I Sbjct: 200 EDELTDRSEKFLAGELVREKLFRLTGDELPYTSTVIIDKFEEEPPQKKGQKRLLRIAATI 259 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER K +++G G+ IK I +E + E+ ++ + V L L+VKV+ W D Sbjct: 260 VVERDGHKAMVIGDKGERIKRIGMETRVELEKLADAKVFLELWVKVRSGWADD 312 >gi|186475607|ref|YP_001857077.1| GTP-binding protein Era [Burkholderia phymatum STM815] gi|184192066|gb|ACC70031.1| GTP-binding protein Era [Burkholderia phymatum STM815] Length = 287 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 152/288 (52%), Gaps = 21/288 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+N VG KVSI + K QTTR + GI + ++Q +F+DTPG F Sbjct: 1 MVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLDDAQYIFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S ++ + R ST+ D V V+++ R + +L ++ S+ +LI NK+D Sbjct: 60 RHSGALNRSLNRAVTSTLTSVDAVLFVIEAGR-FGPDDQKVL-DLIPASAPTLLIANKLD 117 Query: 142 CVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW---VYS 194 V + ++Q A + F E + DD+ L + P P +Y Sbjct: 118 RVSDKDSLFPFMQQMSAARE--FKE----IVPLSARNPDDIKRLLTTVKPYLPQGDPIYG 171 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERP 253 D ++D AEI REK+F E+PY+S V+ +K+E +G + I I VER Sbjct: 172 EDDLTDRSERFLAAEILREKVFRWTGDELPYTSTVLIDKFE--TEGRLRRIFATILVERD 229 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + K +++G+ G +K IS EA+ ++ ++ + PV+L F+KV+ W + Sbjct: 230 THKAMIIGQKGAKLKQISSEARLDMEKLFDGPVYLETFIKVKSGWADN 277 >gi|54114479|gb|AAV29873.1| NT02FT1337 [synthetic construct] Length = 297 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 159/293 (54%), Gaps = 14/293 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G ++++G N GKSTL+N + KVSI + K QTTR + GI + ++Q +++DTPGI Sbjct: 3 KCGYLSIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGI 62 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLK--EIAKRSSRLIL 135 + +K M + + + K D++ VV+ + EL+ NI + LK EI + L Sbjct: 63 HIKEPKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIP-----IFL 117 Query: 136 ILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VY 193 ++NK+D K E + I KL F + + VSA +GH +++ + + LP + + Y Sbjct: 118 VVNKVDKKKSLEAAMFIESIKEKLSFYDVIY-VSAKQGHNINELESRIEKLLPESEYFFY 176 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 DQI+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER Sbjct: 177 EEDQITDRSIKFMVAEIIREKIMRTIGSEVPYQIAVEIDSYKVDQEKNIVYIYASILVER 236 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 SQK I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 237 DSQKGIVIGAKGAKLKKIGTDSRIDIERLVGMQVNLKTHVKVKSGWSDDDRAL 289 >gi|239814410|ref|YP_002943320.1| GTP-binding protein Era [Variovorax paradoxus S110] gi|239800987|gb|ACS18054.1| GTP-binding protein Era [Variovorax paradoxus S110] Length = 321 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 154/309 (49%), Gaps = 25/309 (8%) Query: 11 EHKDFVQDNSRSG-----CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 E +D D SG +A+VG N GKSTL+N VG K+SI + K QTTR + G+ Sbjct: 10 ESQDPAGDTGASGPQHCGLIAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMR 69 Query: 66 SEKESQIVFLDTPGIFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 + +Q VF+DTPG ++ +K + + + D++ VV++ + +LK Sbjct: 70 TLGATQFVFVDTPGFQTLHANALNKSLNKTVQGAVGDVDLILFVVEAGSFTPAD-ERVLK 128 Query: 125 EIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK--TFM----VSATKGHGCDDV 178 + K +L+ NK+D V + +IA L ++ +F +SA + + Sbjct: 129 LLGK-GIPTVLLANKLDNVH-----RRGDIAPWLQTMQAKHSFAEFVPMSAKNAKDVERL 182 Query: 179 LNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-- 236 LP PW Y+ D+++D E+ REKLF E+PY+S V+ +K+EE Sbjct: 183 FGICEKYLPEQPWFYAEDELTDRSEKFLAGELVREKLFRLTGDELPYTSTVIIDKFEEEP 242 Query: 237 --KKDGSILIR--QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFV 292 KK L+R I VER K +++G G+ IK I +E + E+ ++ + V L L+V Sbjct: 243 PQKKGQKRLLRIAATIVVERDGHKAMVIGDKGERIKRIGMETRVELEKLADAKVFLELWV 302 Query: 293 KVQKDWGHD 301 KV+ W D Sbjct: 303 KVRSGWADD 311 >gi|270159972|ref|ZP_06188628.1| GTP-binding protein Era [Legionella longbeachae D-4968] gi|289165284|ref|YP_003455422.1| membrane-associated, 16S rRNA-binding GTPase [Legionella longbeachae NSW150] gi|269988311|gb|EEZ94566.1| GTP-binding protein Era [Legionella longbeachae D-4968] gi|288858457|emb|CBJ12335.1| membrane-associated, 16S rRNA-binding GTPase [Legionella longbeachae NSW150] Length = 294 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/296 (32%), Positives = 158/296 (53%), Gaps = 14/296 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 S G +ALVG N GKSTL+N + KVSI + K QTTR + GI +E + Q V++DTP Sbjct: 2 TSYCGYIALVGRPNVGKSTLLNCILQQKVSITSKKPQTTRHSILGICTEGDYQFVYVDTP 61 Query: 79 GIFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLIL 135 GI K + +++M + + S ++ D++ +VD +E + L+K+ AK S L++ Sbjct: 62 GIHQGNKKAMNRMMNKTAISVLRDVDVIAFLVDGTHWKEEDEYVLSLVKQ-AKVPSLLVV 120 Query: 136 ILNKIDCVKPERL--LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K + L +EQ ++ I +SA G D++ L + LP P ++ Sbjct: 121 NKVDKIDDKDKLLPWIEQMSAKHEFAAI---IPISAKTGMQVDELQAKLQAYLPEGPHLF 177 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR--QVIYVE 251 DQ++D P AE+ REK+F +E+PYS VT E KD L+R +I V+ Sbjct: 178 PDDQLTDRPTKFLCAELIREKIFRFCGQELPYS---VTVDIESFKDEGTLVRIHALILVD 234 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 + + K++++G GQ +K I+ A+ ++ ++L + V L + KV+ W D + Q Sbjct: 235 KDNHKRMIIGDKGQKLKEIATTARIDMEKLLGKKVFLQCWCKVKSGWSDDERILKQ 290 >gi|229588602|ref|YP_002870721.1| GTP-binding protein Era [Pseudomonas fluorescens SBW25] gi|229360468|emb|CAY47325.1| GTP-binding protein [Pseudomonas fluorescens SBW25] Length = 302 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q V++DTPG Sbjct: 9 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGTVQAVYVDTPG 68 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + + ++ M + + + +K D+V VVD + + +L+ + + LI+ LN Sbjct: 69 MHKGGEKALNRYMNKTASAALKDVDVVIFVVDRTKWTDED-QMVLERVQYVTGPLIVALN 127 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ ++AE+ L ++++ +SA GH + + + LP Sbjct: 128 KTD-----RIEDKAELMPHLTWLQEQLPNAQIMPISAQHGHNLEALERVIAGYLPENEHF 182 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ + E+PY V E++ K+ G L I +I VE Sbjct: 183 FPEDQITDRSSRFLAAELVREKIMRQMGAELPYQITVEIEEF--KQQGKTLHIHALILVE 240 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G+ IK I EA+K++ + + + L L+VKV+ W D + Sbjct: 241 RDGQKKIIIGDKGERIKRIGTEARKDMELLFDSKIMLNLWVKVKGGWSDDERAL 294 >gi|89256163|ref|YP_513525.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica LVS] gi|115314634|ref|YP_763357.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica OSU18] gi|156502202|ref|YP_001428267.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010561|ref|ZP_02275492.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica FSC200] gi|254367486|ref|ZP_04983512.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|290954579|ref|ZP_06559200.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica URFT1] gi|295311969|ref|ZP_06802792.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica URFT1] gi|89143994|emb|CAJ79229.1| GTP-binding protein [Francisella tularensis subsp. holarctica LVS] gi|115129533|gb|ABI82720.1| GTP-binding protein [Francisella tularensis subsp. holarctica OSU18] gi|134253302|gb|EBA52396.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|156252805|gb|ABU61311.1| GTP-binding protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 297 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 159/293 (54%), Gaps = 14/293 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G ++++G N GKSTL+N + KVSI + K QTTR + GI + ++Q +++DTPGI Sbjct: 3 KCGYISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGI 62 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLK--EIAKRSSRLIL 135 + +K M + + + K D++ VV+ + EL+ NI + LK EI + L Sbjct: 63 HIKEPKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIP-----IFL 117 Query: 136 ILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VY 193 ++NK+D K E + I KL F + + VSA +GH +++ + + LP + + Y Sbjct: 118 VVNKVDKKKSLEAAMFIEYIKEKLSFYDVIY-VSAKQGHNINELESRIEKLLPESEYFFY 176 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVER 252 DQI+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER Sbjct: 177 EEDQITDRSIKFMVAEIIREKIMRTIGSEVPYQIAVEIDSYKVDQEKNIVYIYASILVER 236 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 SQK I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 237 NSQKGIVIGAKGAKLKKIGTDSRIDIERLVGMQVNLKTHVKVKSGWSDDDRAL 289 >gi|294670669|ref|ZP_06735544.1| hypothetical protein NEIELOOT_02391 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307557|gb|EFE48800.1| hypothetical protein NEIELOOT_02391 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 308 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 159/304 (52%), Gaps = 35/304 (11%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + R G +A+VG N GKSTL+N +G K+SI + K QTTR V GI ++ +Q VF+ Sbjct: 13 VPNGYRCGFIAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKVTGIYTDDTAQFVFV 72 Query: 76 DTPGIFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DTPG D + L RL+ + + D V VV++ R + + ++K++ K + Sbjct: 73 DTPGF--QTDHRNALNDRLNQNVTEALTGIDAVVFVVEAMRLTEAD-RTVIKQLPKHTP- 128 Query: 133 LILILNK---------------IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 +IL +NK ID V+ E AE VSA G + Sbjct: 129 VILAVNKIDKDKAKDKYALQAFIDDVRREFDFAAAE------------AVSAKHGLRIAN 176 Query: 178 VLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK 237 +L L + LP + +Y D ++D EI REKLF +L +E+PY+ V E+++E Sbjct: 177 LLELLKTYLPESVPMYPEDMVTDKSSRFLAMEIVREKLFRYLGEELPYAMNVEVEQFKE- 235 Query: 238 KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKD 297 ++G I + V++ +QK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ Sbjct: 236 ENGIQHIYIAVLVDKENQKPIVIGKGGEKLKKISTEARLDMEKLFDCKVFLQVWVKVKSG 295 Query: 298 WGHD 301 W D Sbjct: 296 WADD 299 >gi|73541938|ref|YP_296458.1| GTP-binding protein Era [Ralstonia eutropha JMP134] gi|72119351|gb|AAZ61614.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Ralstonia eutropha JMP134] Length = 311 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 156/292 (53%), Gaps = 21/292 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 20 RCGTVAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRLVGIQTTDDAQYVFVDTPG- 78 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + + ++ + R ST+ D+V VV++ + +L + K + ++L+ N Sbjct: 79 FQTRHASALNRSLNRAVTSTLSSVDLVLFVVEAGY-YGADDEKVLALLPKNTP-VLLVTN 136 Query: 139 KIDCVKPER------LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 K+D V +R LE+ + F E M + T+ H + + LP + Sbjct: 137 KLDRVTDDRAGVMMPFLEK--MGQLFPFREVVPMSAKTRDH-IARLFEIIRPYLPEGEPM 193 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IY 249 Y AD ++D +EI REK+F E+PY+S V+ +K+E + +R+V I Sbjct: 194 YDADAMTDRSERFLASEIIREKVFRWTGDELPYTSTVIIDKFETEG----RLRRVFATIL 249 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER + K +++G G +K IS EA+ ++ ++ + V+L +++KV+ W + Sbjct: 250 VERDAHKAMIIGNKGSKLKQISTEARLDMEKLFDGKVYLEMWIKVKSGWADN 301 >gi|188577281|ref|YP_001914210.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521733|gb|ACD59678.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzae PXO99A] Length = 285 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 152/287 (52%), Gaps = 16/287 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKD 85 ++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ K Sbjct: 1 MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKR 60 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 + +++M R + +++ D LV+++ R D +A R + + K Sbjct: 61 AMNRVMNRAARGSLEGVDAAVLVIEAGR------WDEEDTLAFRVLSDAEVPVVLVVNKV 114 Query: 146 ERLLEQAEIANKLVFIE--KTFM----VSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +RL ++ + L + +TF VSA K G + ++ L +P A ++ D+I+ Sbjct: 115 DRLKDKTALLPFLAQVSEGRTFAAVHPVSALKRKGLEALVGDLLKLVPEAEAMFGEDEIT 174 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D E+ RE+L L +E+PY++ V E++ E DG++L I VI+VER QK I Sbjct: 175 DRSQRFLAGELVREQLMRQLGEELPYATTVEIERFAE--DGALLRIGAVIWVEREGQKAI 232 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++GK G +K I +A+ ++ + V L +V+V++ W D Sbjct: 233 VIGKGGTRLKEIGGKARLQMERLFGAKVFLETWVRVREGWSDDEAAL 279 >gi|226943498|ref|YP_002798571.1| GTP-binding protein Era [Azotobacter vinelandii DJ] gi|259645940|sp|C1DQS3|ERA_AZOVD RecName: Full=GTPase Era gi|226718425|gb|ACO77596.1| GTP-binding protein Era [Azotobacter vinelandii DJ] Length = 300 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 158/300 (52%), Gaps = 17/300 (5%) Query: 15 FVQDNS-RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 ++NS R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E + Q + Sbjct: 1 MTEENSLRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGDVQAI 60 Query: 74 FLDTPGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 ++DTPG+ D + ++ M + + + +K D+V VVD R + + +L + Sbjct: 61 YVDTPGLHKQNDKALNRYMNKTASAALKDVDVVIFVVDRMRWTEED-QLVLDRLQYVQGP 119 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTL 186 +++ +NK D RL ++ E+ L ++ + +SA GH D + + L Sbjct: 120 VLVAVNKAD-----RLEDKVELLPHLQWLAQQLPNAEIVPISALHGHNLDTLERLVAGRL 174 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IR 245 P + DQI+D AE+ REK+ L E+PY V E + K+ G +L I Sbjct: 175 PQGEHFFPEDQITDRSSRFLAAELVREKIMRQLGAELPYQVTVEIEDF--KQQGQVLHIH 232 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +I VER QKKI++G+ G+ IK I EA++ + + + V L L+VKV+ W D + Sbjct: 233 ALILVEREGQKKIIIGEKGERIKRIGQEARQGMEVLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|89900533|ref|YP_523004.1| GTP-binding protein Era [Rhodoferax ferrireducens T118] gi|89345270|gb|ABD69473.1| GTP-binding protein Era [Rhodoferax ferrireducens T118] Length = 314 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 154/299 (51%), Gaps = 27/299 (9%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI S+ +Q VF+DTP Sbjct: 17 GQRCGLIAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHSQGAAQFVFVDTP 76 Query: 79 GIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLL-KEIAKRSSRL 133 G F + ++ ++ + + + D++ VV++ + + LL K+I Sbjct: 77 G-FQTRHNNALNRSLNKTVLGAVGDVDLILFVVEAGMFNQADAKVLALLSKDIPT----- 130 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFM------VSATKGHGCDDVLNYLCSTLP 187 +L+ NK+D V +A+IA L +++ +SA + +L LP Sbjct: 131 LLVANKLDQVT-----RRADIAPWLQEMQQRHKFAEFVPMSAKNAKDIERMLGICEKYLP 185 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-----KKDGSI 242 W Y+ D+++D +E REKLF E+PY+S VV +K+EE K+ + Sbjct: 186 EQAWWYAEDELTDRSEKFLASETVREKLFRLTGDELPYTSTVVIDKFEEEAGRGKQKRLL 245 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I I VER + K +++G G+ IK I +E + E+ + L+ V + ++VKV+ W D Sbjct: 246 RIAATIVVERDTHKAMVIGDKGERIKRIGMETRVELEKALDCKVFIEMWVKVRSGWADD 304 >gi|254459073|ref|ZP_05072496.1| GTP-binding protein Era [Campylobacterales bacterium GD 1] gi|207084344|gb|EDZ61633.1| GTP-binding protein Era [Campylobacterales bacterium GD 1] Length = 292 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 155/290 (53%), Gaps = 18/290 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++G V+L+G NAGKSTL+N +G +++V+ K TR IV +++QI+F+DTPG Sbjct: 2 TKAGFVSLIGRPNAGKSTLMNSLLGENIAMVSQKANATRKRSNAIVMHEDTQIIFVDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCL---VVDS--HRE--LKVNIHDLLKEIAKRSSR 132 + + ++ M+ + + D++ V DS H E LK+N + Sbjct: 62 LHEREKLLNQFMLDEALKAMGDCDLIVYLAPVTDSIEHYEKFLKLN---------NSKVK 112 Query: 133 LILILNKIDCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 I++L+KID V ++L ++ N+ + E V+ K G +D+L + LP +P+ Sbjct: 113 HIIVLSKIDQVNQDKLFKRIASYNQFSDYFEALIPVAIPKKVGHEDLLKTISKNLPESPF 172 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y + ++ + A RE +F ++ EIPY S V+ + +E ++G I I +E Sbjct: 173 LYDPEDLTSELVRDIYAGFIREGIFENVSDEIPYESDVLIDSIKE-EEGIDKIYATIIIE 231 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + SQK I++GK G++IK I A++++ + + L L V V+K W D Sbjct: 232 KESQKGIIIGKGGESIKRIGKSAREKVERLSGKKAFLSLQVSVKKGWSKD 281 >gi|254369164|ref|ZP_04985176.1| hypothetical protein FTAG_00104 [Francisella tularensis subsp. holarctica FSC022] gi|157122114|gb|EDO66254.1| hypothetical protein FTAG_00104 [Francisella tularensis subsp. holarctica FSC022] Length = 297 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 158/291 (54%), Gaps = 14/291 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G ++++G N GKSTL+N + KVSI + K QTTR + GI + ++Q +++DTPGI Sbjct: 5 GYISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHI 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLK--EIAKRSSRLILIL 137 + +K M + + + K D++ VV+ + EL+ NI + LK EI + L++ Sbjct: 65 KEPKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHSEIP-----IFLVV 119 Query: 138 NKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSA 195 NK+D K E + I KL + + + VSA +GH +++ + + LP + + Y Sbjct: 120 NKVDKKKSLEAAMFIESIKEKLSYYDVIY-VSAKQGHNINELESRIEKLLPESEYFFYEE 178 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQI+D + AEI REK+ + E+PY V + ++ ++ +I+ I I VER S Sbjct: 179 DQITDRSIKFMVAEIIREKIMRTIGSEVPYQIAVEIDSYKVDQEKNIVYIYASILVERNS 238 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QK I++G G +K I +++ +I ++ V+L VKV+ W D + Sbjct: 239 QKGIVIGAKGAKLKKIGTDSRIDIERLVGMQVNLKTHVKVKSGWSDDDRAL 289 >gi|260890127|ref|ZP_05901390.1| hypothetical protein GCWU000323_01289 [Leptotrichia hofstadii F0254] gi|260860150|gb|EEX74650.1| GTP-binding protein Era [Leptotrichia hofstadii F0254] Length = 293 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 89/271 (32%), Positives = 144/271 (53%), Gaps = 8/271 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG + +VG N GKSTL+N+ V KV+IV+ K TTR ++GIV+ ESQ +F+DTPGI Sbjct: 2 KSGFITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M ++ +++ D++ ++D +E+ + + + + ++L++NKI Sbjct: 62 HKPKHLLGEHMTNVALEALENVDLIMFMLDGTQEISTGDMFVNENVRSVKTPIVLVINKI 121 Query: 141 DCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + E ++ EI KL ++ ++A G + L W Y D + Sbjct: 122 DKMSDEEIEEKKKEIREKLGEFDEIITLTAEYAIGIHKIFEVAEKYLSNDVWFYPEDYYT 181 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IYVERPSQK 256 DLP+ E REK+ H EIP+S V E K IR+ IYVER SQK Sbjct: 182 DLPVNKIVVETVREKILHHTKDEIPHSVAVEIINVETKP----TIRKYDINIYVERDSQK 237 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVH 287 I++GK+G +K I EA++EI +++ V+ Sbjct: 238 GIIIGKDGAMLKKIGTEARREIEHLIDLKVN 268 >gi|300704606|ref|YP_003746209.1| 30S ribosomal subunit-binding GTPase [Ralstonia solanacearum CFBP2957] gi|299072270|emb|CBJ43603.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum CFBP2957] Length = 290 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 152/291 (52%), Gaps = 24/291 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+N VG KVSI + K QTTR + GI + ++Q VF+DTPG F Sbjct: 1 MVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPG-FQT 59 Query: 84 K--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + ++ + R ST+ D V VV++ R + L + R + +ILI+NK+D Sbjct: 60 RHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVL--SLLPRETPVILIVNKVD 117 Query: 142 CVKPERLLEQA-----EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW---VY 193 + E ++A F E M + + DD+L L P P +Y Sbjct: 118 RLDAYTRAEMVAVFLQDMAQVFPFKEIVPMSAKNR----DDILRLLGIVRPYLPEGAPMY 173 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IYV 250 + ++D AEI REK+F E+PYSS VV +K+E + +R+V I V Sbjct: 174 DPEALTDRSERFLAAEIVREKVFRWTGDELPYSSTVVIDKFETEGR----LRRVFVTILV 229 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +R + K +++G G +K IS EA+ ++ ++ + V+L ++VKV+ W + Sbjct: 230 DRDAHKAMIIGAKGAKLKQISTEARMDMEKLFDGKVYLEVWVKVKSGWADN 280 >gi|194290151|ref|YP_002006058.1| gtp-binding protein era [Cupriavidus taiwanensis LMG 19424] gi|193223986|emb|CAQ69995.1| 30S ribosomal subunit_binding GTPase [Cupriavidus taiwanensis LMG 19424] Length = 311 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 155/292 (53%), Gaps = 21/292 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTPG Sbjct: 20 RCGTVAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDAQYVFVDTPG- 78 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F + + ++ + R ST+ D++ VV++ + +L + K + ++L+ N Sbjct: 79 FQTRHASALNRSLNRAVTSTLSSVDLILFVVEAGY-YGADDEKVLSLLPKNTP-VLLVAN 136 Query: 139 KIDCVKPER------LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 K+D + R LE+ + F E M + T+ H + + LP + Sbjct: 137 KLDRIGENRSEVMMPFLEK--MGQLFPFREVVPMSAKTRDH-IARLFEIIRPYLPEGEPM 193 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV---IY 249 Y AD ++D +EI REK+F E+PY+S VV +K+E + +R+V I Sbjct: 194 YDADAMTDRSERFLASEIIREKVFRWTGDELPYTSTVVIDKFETEGR----LRRVFATIL 249 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 VER + K +++G G +K IS EA+ ++ ++ + V+L +++KV+ W + Sbjct: 250 VERDAHKAMIIGNKGSKLKQISTEARLDMEKLFDGKVYLEMWIKVKSGWADN 301 >gi|310287377|ref|YP_003938635.1| GTP-binding protein Era [Bifidobacterium bifidum S17] gi|309251313|gb|ADO53061.1| GTP-binding protein Era [Bifidobacterium bifidum S17] Length = 336 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A+VG N GKSTL+N +G +V+I + + +TTR +RGI++ +Q+V +DTPGI Sbjct: 27 RSGFIAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGI 86 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL----KVNIHDLLKEIAKRSSR---- 132 + + + + ++ D + ++ + +E+ K + L + A + Sbjct: 87 HRPRTLLGQRLNDIVEESLSDIDAIAFLLPADQEIGPGDKRILSRLRTDFATKGEDGTFA 146 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + ++L+++ N+ VSA + D+V L P Sbjct: 147 WKVPLIAIVTKIDQLGRQQLIDKLIEINEFADFSDIVPVSALEHDNLDEVRQVLIDNTPE 206 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--------G 240 P +Y DQ+S+ AE+ R L E+P+S VV + E +D G Sbjct: 207 GPQMYPDDQVSEERPEDTIAELIRGAFLEELDDELPHSLAVVVDSIERPEDNESGQSYEG 266 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I + +YVER SQK I++G+ +++ + + + + I+ L L VKV K W Sbjct: 267 KIQVMVSVYVERDSQKPIIIGRGAEHLVRVKKKLRTPVNRIVGGKAKLDLHVKVAKGWQS 326 Query: 301 DPK 303 DPK Sbjct: 327 DPK 329 >gi|90416441|ref|ZP_01224372.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2207] gi|90331640|gb|EAS46868.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2207] Length = 299 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 158/287 (55%), Gaps = 4/287 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K+ I + K QTTR + GI + E+Q++F+DTPG Sbjct: 6 TRCGYVAIVGRPNVGKSTLLNHILGQKLCITSRKPQTTRHTLLGIKTVDETQVIFVDTPG 65 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 I N + + +++M R + S I D+V VVD + + + + K IA +I+ +N Sbjct: 66 IHTNQERAINRVMNRSAASVIADVDVVIFVVDRFEWSEADEY-VAKYIANYDVPVIIAIN 124 Query: 139 KIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K+D ++ E LL + + V +SA + + + + S +P A ++ DQ Sbjct: 125 KVDLIEDKEELLPHLQFLSDKVKAADLIPLSALRKTNFEQLEEKISSFIPEAMHMFPDDQ 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+D AE+ REK+ L E+PY V E++ +++ + I +I VER QKK Sbjct: 185 ITDRSERFLAAEMVREKIMRQLGAEVPYQVTVEIEEFRVERNVT-HIGALILVEREGQKK 243 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I++G G+ IK+I +A+ ++ +L+ V L +VKV+ W D + Sbjct: 244 IIIGNKGERIKSIGQQARADMESLLDCKVMLKTWVKVRSGWSDDERA 290 >gi|224282934|ref|ZP_03646256.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171] Length = 336 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A+VG N GKSTL+N +G +V+I + + +TTR +RGI++ +Q+V +DTPGI Sbjct: 27 RSGFIAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGI 86 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL----KVNIHDLLKEIAKRSSR---- 132 + + + + ++ D + ++ + +E+ K + L + A + Sbjct: 87 HRPRTLLGQRLNDIVEESLSDIDAIAFLLPADQEIGPGDKRILSRLRTDFATKGEDGTFA 146 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + ++L+++ N+ VSA + D+V L P Sbjct: 147 WKVPLIAIVTKIDQLGRQQLIDKLIEINEFADFSDIVPVSALEHDNLDEVRQVLIDNTPE 206 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--------G 240 P +Y DQ+S+ AE+ R L E+P+S VV + E +D G Sbjct: 207 GPQMYPDDQVSEERPEDTIAELIRGAFLEELDDELPHSLAVVVDSIERPEDNESGQSYEG 266 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I + +YVER SQK I++G+ +++ + + + + I+ L L VKV K W Sbjct: 267 KIQVMVSVYVERDSQKPIIIGRGAEHLVRVKKKLRTPVNRIVGGKAKLDLHVKVAKGWQS 326 Query: 301 DPK 303 DPK Sbjct: 327 DPK 329 >gi|291276928|ref|YP_003516700.1| GTP-binding protein ERA [Helicobacter mustelae 12198] gi|290964122|emb|CBG39966.1| GTP-binding protein ERA homolog [Helicobacter mustelae 12198] Length = 304 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 151/292 (51%), Gaps = 17/292 (5%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE----SQIV 73 + +R G V ++G N GKST +N+ +G ++++V+HK TR + I+ +E SQI+ Sbjct: 5 EQTRCGYVGVIGKPNVGKSTFLNKIIGQQIALVSHKANATRKRMNFIIPFEEDGIQSQII 64 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 F+DTPG++ + M++ + + +D++ ++ + ++ + Sbjct: 65 FVDTPGLYEGAKLLNVFMLKEAMRAHQESDLILFIISATDPYARQTYEEFLAFNANKPHI 124 Query: 134 ILILNKIDCVKPERLLEQAEI----ANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 IL LNKID + ++LL + +K + I SA K +L + LP + Sbjct: 125 IL-LNKIDLIDKKKLLSLLDSYQCHQDKFLAI---IPFSAKKDEDFSALLRVIHHYLPKS 180 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL--IRQV 247 P+++ +Q++D M E+ RE LF L +E+PY S VV EK E G + I Sbjct: 181 PFLFDMNQLTDHKMRDIYKELIRESLFDFLSEELPYESEVVIEKVIE---GDLFEKIFAK 237 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 I+VE+ SQK +++G+N IK I ++++I + E+ + L L V VQK W Sbjct: 238 IFVEKESQKSMVIGRNASTIKRIGRHSREKIEHLTEKKIFLQLNVFVQKSWS 289 >gi|313140093|ref|ZP_07802286.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171] gi|313132603|gb|EFR50220.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171] Length = 344 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A+VG N GKSTL+N +G +V+I + + +TTR +RGI++ +Q+V +DTPGI Sbjct: 35 RSGFIAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGI 94 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL----KVNIHDLLKEIAKRSSR---- 132 + + + + ++ D + ++ + +E+ K + L + A + Sbjct: 95 HRPRTLLGQRLNDIVEESLSDIDAIAFLLPADQEIGPGDKRILSRLRTDFATKGEDGTFA 154 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + ++L+++ N+ VSA + D+V L P Sbjct: 155 WKVPLIAIVTKIDQLGRQQLIDKLIEINEFADFSDIVPVSALEHDNLDEVRQVLIDNTPE 214 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--------G 240 P +Y DQ+S+ AE+ R L E+P+S VV + E +D G Sbjct: 215 GPQMYPDDQVSEERPEDTIAELIRGAFLEELDDELPHSLAVVVDSIERPEDNESGQSYEG 274 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I + +YVER SQK I++G+ +++ + + + + I+ L L VKV K W Sbjct: 275 KIQVMVSVYVERDSQKPIIIGRGAEHLVRVKKKLRTPVNRIVGGKAKLDLHVKVAKGWQS 334 Query: 301 DPK 303 DPK Sbjct: 335 DPK 337 >gi|220934267|ref|YP_002513166.1| GTP-binding protein Era [Thioalkalivibrio sp. HL-EbGR7] gi|219995577|gb|ACL72179.1| GTP-binding protein Era [Thioalkalivibrio sp. HL-EbGR7] Length = 281 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 147/274 (53%), Gaps = 11/274 (4%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS-YHKLMI 92 GKSTL+N VG K++ T K QTTR + GIV+ Q++ +DTPGI + +++ Sbjct: 2 GKSTLLNALVGEKIAATTRKPQTTRHRILGIVTRGADQLILVDTPGIDTRSEKLLGRVLN 61 Query: 93 RLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILILNKIDCV-KPERLL 149 + + + D V VV++ R I ++LK+ + +L+L +NK+D + + E LL Sbjct: 62 QAAQAVFADTDAVLFVVEADRWESGDAQILEMLKQAGVK--KLVLAINKVDRLERKEALL 119 Query: 150 EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAE 209 E L +S +G + +++ L LP ++ D+++D E Sbjct: 120 PFIERLQGLHAFSDIVPISGLRGVNLEPLVDVLQGFLPEGVHLFPEDELTDRSQRFRVTE 179 Query: 210 ITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL--IRQVIYVERPSQKKIMLGKNGQNI 267 + RE+L L +E+PY++ V E W KD + I VI+VER SQK I++GK G+ I Sbjct: 180 VIREELLERLGQEVPYATAVEVESW---KDTPTVTHIDAVIWVERDSQKAIVVGKGGRMI 236 Query: 268 KTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K++ A+ + ++LE+ V L L+VKV++ W D Sbjct: 237 KSVGTAARHTLEQMLERKVMLRLWVKVREGWQAD 270 >gi|323526858|ref|YP_004229011.1| GTP-binding protein Era [Burkholderia sp. CCGE1001] gi|323383860|gb|ADX55951.1| GTP-binding protein Era [Burkholderia sp. CCGE1001] Length = 287 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 149/282 (52%), Gaps = 9/282 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+N VG KVSI + K QTTR + GI + +++Q +F+DTPG F Sbjct: 1 MVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K S ++ + R ST+ D + V+++ R + +L I S +LI NK+D Sbjct: 60 KHSSALNRSLNRAVTSTLTAVDAILFVIEAGR-FGADDQKVLDLIPP-SVPTLLIANKLD 117 Query: 142 CVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 V + L + + L + +SA ++ + LP +Y D ++D Sbjct: 118 RVSDKDSLFPFMQQMSALRPFNEIVPLSAKNPDDIKRLMATVKPYLPEGAPIYGEDDLTD 177 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQKKIM 259 AEI REK+F E+PY+S V+ +K+E +G + I I VER + K ++ Sbjct: 178 RSERFLAAEILREKVFRWTGDELPYTSTVLIDKFE--TEGRLRRIFATILVERDTHKAMI 235 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G+ G +K IS EA+ ++ ++ + PV+L F+KV+ W + Sbjct: 236 IGQKGAKLKQISTEARLDMEKLFDGPVYLETFIKVKSGWADN 277 >gi|90021887|ref|YP_527714.1| GTP-binding protein Era [Saccharophagus degradans 2-40] gi|89951487|gb|ABD81502.1| GTP-binding protein Era [Saccharophagus degradans 2-40] Length = 298 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 158/291 (54%), Gaps = 8/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + + +G +A+VG N GKSTL+N + K+SI + K QTTR+ V GI +E Q+VF+DT Sbjct: 4 EKTYAGYIAIVGRPNVGKSTLLNHVLEQKISITSRKPQTTRNNVVGIKTEGGVQMVFVDT 63 Query: 78 PGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PGI D + ++ M + + S + D V VVD + H +L ++ +I+ Sbjct: 64 PGIHLGHDKAINRFMNKSASSALADVDTVVFVVDKQHWTPEDEH-VLSQVINVKCPVIIA 122 Query: 137 LNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D ++ + L +A KL E +SA KG D + + S LP A Y Sbjct: 123 VNKVDQLEDKNSILPHLQRLAEKLPKAE-IVPISALKGQNLDRLEALIKSYLPEATHFYP 181 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 DQI+D AEI REK+ L E+PY V E+++ +G+++ I +I VER Sbjct: 182 DDQITDRSSRFMAAEIVREKITRQLGAELPYQMAVEIEEFQH--EGTLITIHALILVERD 239 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QK+I++G G+ +K I +A++++ + + V L L+VKV+ W D + Sbjct: 240 GQKRILIGDKGEKLKAIGSQAREDMERLFDCKVMLKLWVKVKSGWSDDERA 290 >gi|294790832|ref|ZP_06755990.1| GTP-binding protein Era [Scardovia inopinata F0304] gi|294458729|gb|EFG27082.1| GTP-binding protein Era [Scardovia inopinata F0304] Length = 343 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 149/313 (47%), Gaps = 30/313 (9%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A+VG N GKSTL+N VG +V+I + K +TTR +R IV+ + Q+V +DTPGI Sbjct: 23 RSGFIAVVGRPNVGKSTLINSLVGKQVAITSSKPETTRKAIRAIVTRDDCQLVLVDTPGI 82 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--------- 131 + K + + ++ +D + ++ +++E+ +L + ++ S Sbjct: 83 HRPRTVLGKRLNDIVDESLADSDAIAFLLPANQEIGPGDRRILSRLRQQFSYKDQSGQWQ 142 Query: 132 ---RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI ++ KID +K L+ + ++ + VSA + D+VL +P Sbjct: 143 WRKPLIGVITKIDYLKKNDLVNKIIEIDQFGHFTQLVPVSALQSDNVDEVLRVFRQAVPE 202 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE------------- 235 P +Y +QIS+ P AE+ R L E+P+S VV + E Sbjct: 203 GPLMYPVEQISEEPPKETIAELIRGVFLEELDDELPHSLAVVVDSIEYPDSDDRGQDEDQ 262 Query: 236 -----EKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLIL 290 + D L+ +YVER SQK I++G N +++ + + + + I+ L L Sbjct: 263 TADSYRQADHKALVHVSVYVERNSQKPIIIGHNAEHLVRVKKKLRTPVNRIVGCKSTLDL 322 Query: 291 FVKVQKDWGHDPK 303 VKV K W DPK Sbjct: 323 HVKVSKSWQSDPK 335 >gi|325920676|ref|ZP_08182586.1| GTP-binding protein Era [Xanthomonas gardneri ATCC 19865] gi|325548866|gb|EGD19810.1| GTP-binding protein Era [Xanthomonas gardneri ATCC 19865] Length = 285 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 157/281 (55%), Gaps = 12/281 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKD 85 ++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+ +DTPG+ K Sbjct: 1 MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLALVDTPGLHREQKR 60 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL--KEIAKRSSRLILILNKIDCV 143 + +++M R + +++ D LV+++ R + D L K ++ ++L++NK+D + Sbjct: 61 AMNRVMNRAARGSLEGVDAAVLVIEAGR---WDEEDTLAFKVLSDSKVPVVLVVNKVDRL 117 Query: 144 KPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 K + L A+++ F VSA K G + ++ L +P A ++ D+I+D Sbjct: 118 KDKTALFPFLAQVSEGRTFA-AVHPVSALKRKGLEALVGDLLKLVPEAEAMFGEDEITDR 176 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIML 260 E+ RE+L L +E+PY++ V E++ E DG++L I VI+VER QK I++ Sbjct: 177 SQRFLAGELVREQLMRQLGEELPYATTVEIERFAE--DGALLRIGAVIWVEREGQKAIVI 234 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 GK G +K I +A+ ++ + V L +V+V++ W D Sbjct: 235 GKGGTRLKEIGGKARLQMERLFGAKVFLETWVRVREGWSDD 275 >gi|332298820|ref|YP_004440742.1| GTP-binding protein Era-like-protein [Treponema brennaborense DSM 12168] gi|332181923|gb|AEE17611.1| GTP-binding protein Era-like-protein [Treponema brennaborense DSM 12168] Length = 332 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 149/289 (51%), Gaps = 10/289 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++ VA+VG + GKST +N G K+SIV+ QTTR+ VRGIV+ Q+VF+DTPG Sbjct: 40 KTAVVAIVGRPSVGKSTFLNTASGEKISIVSPVPQTTRNAVRGIVNTSLGQLVFVDTPGY 99 Query: 81 FNAKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 DS KL ++L + + AD V ++D+ R + + +A + + ++ + Sbjct: 100 H---DSDKKLNVKLKGIAAEQLSSADAVLYMIDAARAVGTEERLTAELVAPFADKTVVAV 156 Query: 138 NKIDC--VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NKID P A A V + F +SA K +DVL L P A +Y Sbjct: 157 NKIDLNEANPAAARSFAASALPSVPAGRVFDISAEKDTNVNDVLRALYDIAPEAEPLYPE 216 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 + +D + AEI RE+ L E+P++ V E +++G L +R + VER S Sbjct: 217 EFYTDQEVDFRIAEIIREQAINRLRDELPHAIYVDISDMEWRREGKELWVRAFLCVERES 276 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH-DP 302 QK +++GK IKTI +E+ K + +I V L L VKV K+W DP Sbjct: 277 QKGMVIGKGAAMIKTIRVESIKTLRKIFPYRVDLDLQVKVNKNWRQKDP 325 >gi|311064218|ref|YP_003970943.1| GTP-binding protein [Bifidobacterium bifidum PRL2010] gi|310866537|gb|ADP35906.1| Era GTP-binding protein [Bifidobacterium bifidum PRL2010] Length = 336 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 147/303 (48%), Gaps = 20/303 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A+VG N GKSTL+N +G +V+I + + +TTR +RGI++ +Q+V +DTPGI Sbjct: 27 RSGFIAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGI 86 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL----KVNIHDLLKEIAKRSSR---- 132 + + + + ++ D + ++ + +E+ K + L + A + Sbjct: 87 HRPRTLLGQRLNDIVEESLSDIDAIAFLLPADQEIGPGDKRILSRLRTDFATKGEDGTFA 146 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + ++L+++ N+ VSA D+V L P Sbjct: 147 WKVPLIAIVTKIDQLGRQQLIDKLIEINEFADFSDIVPVSALGHDNLDEVRQVLIDNTPE 206 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD--------G 240 P +Y DQ+S+ AE+ R L E+P+S VV + E +D G Sbjct: 207 GPQMYPDDQVSEERPEDTIAELIRGAFLEELDDELPHSLAVVVDSIERPEDNESGQSYEG 266 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I + +YVER SQK I++G+ +++ + + + + I+ L L VKV K W Sbjct: 267 KIQVMVSVYVERDSQKPIIIGRGAEHLVRVKKKLRTPVNRIVGGKAKLDLHVKVAKGWQS 326 Query: 301 DPK 303 DPK Sbjct: 327 DPK 329 >gi|289662800|ref|ZP_06484381.1| GTP-binding protein Era [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 285 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 152/287 (52%), Gaps = 16/287 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKD 85 ++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ K Sbjct: 1 MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKR 60 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 + +++M R + +++ D LV+++ R D +A R + + K Sbjct: 61 AMNRVMNRAARGSLEGVDAAVLVIEAGR------WDEEDTLAFRVLSDAQVPVVLVVNKV 114 Query: 146 ERLLEQAEIANKLVFIE--KTFM----VSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +RL ++ + L + +TF +SA K G + ++ L +P A ++ D+I+ Sbjct: 115 DRLKDKTALFPFLAQVSEGRTFAAVHPISALKRKGLEALVADLLKLVPEAEAMFGEDEIT 174 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKI 258 D E+ RE+L L +E+PY++ V E++ E DG++L I VI+VER QK I Sbjct: 175 DRSQRFLAGELVREQLMRQLGEELPYATTVEIERFAE--DGALLRIGAVIWVEREGQKAI 232 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 ++GK G +K I +A+ ++ + V L +V+V++ W D Sbjct: 233 VIGKGGTRLKEIGGKARLQMERLFGAKVFLETWVRVREGWSDDEAAL 279 >gi|254785338|ref|YP_003072767.1| GTP-binding protein Era [Teredinibacter turnerae T7901] gi|237686443|gb|ACR13707.1| GTP-binding protein Era [Teredinibacter turnerae T7901] Length = 296 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 161/289 (55%), Gaps = 12/289 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG +A+VG N GKSTL+N + K++I + K QTTR+ + GI + + Q++F+DTPGI Sbjct: 6 SGYIAIVGRPNVGKSTLLNHLIEQKLAITSRKPQTTRNNMLGIKTVGDVQMIFVDTPGIH 65 Query: 82 NA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNK 139 + ++ M + + S IK +V + + + + +L+++ + S +I+ +NK Sbjct: 66 KGHGKAINRYMNKSASSAIKDV--DVVVFVVDKNIWTDEDEWVLEQLQRCESPIIVAVNK 123 Query: 140 IDCVKPERL----LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +D + + + L+Q E A + + VSA + + + + S LP AP +++ Sbjct: 124 VDQLDDKSVLLPHLKQLETA---LPKAELVPVSALRHQNLERLEQLVASFLPEAPHMFAE 180 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D+I+D + AEI REK+ L E+PY S V E++EE I I +I VER Q Sbjct: 181 DEITDKNSRYLAAEIIREKIMRQLGDEVPYQSAVEIEQYEETPR-LITIHGLILVERDGQ 239 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 KK+++G+ G+ IK I +A+ ++ ++ + V L L+VKV+ W D + Sbjct: 240 KKMIIGEKGERIKQIGQQARLDMEKLFDCKVMLKLWVKVKSGWSDDERA 288 >gi|121610178|ref|YP_997985.1| GTP-binding protein Era [Verminephrobacter eiseniae EF01-2] gi|121554818|gb|ABM58967.1| GTP-binding protein Era [Verminephrobacter eiseniae EF01-2] Length = 340 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/295 (31%), Positives = 153/295 (51%), Gaps = 20/295 (6%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 R G +A+VG N GKSTL+N VG K+SI + K QTTR + GI + ++Q VF+DTP Sbjct: 44 GQRCGAIAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGICTRAQTQFVFVDTP 103 Query: 79 GIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 G F + ++ +K + + + ++ VV++ + L + K +L+ Sbjct: 104 G-FQTRHANALNKSLNKAVVGALGDVSLILFVVEAGNFTLADAKVL--SLFKPGVATLLL 160 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKT-----FMVSATKGHGCDDVLNYLCST-LPLAP 190 NK+D V P R A+IA L +++ F+ + K G + L +C+ LP Sbjct: 161 ANKLDLV-PRR----ADIAPWLQSMQERHPFAEFVPMSAKNQGDIERLFGICARYLPEQA 215 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS----ILIRQ 246 W Y+ +++D +E REKLF E+PY+S V+ +++ ++ + I Sbjct: 216 WWYAPHELTDRSEKFLASETVREKLFRFTGDELPYTSTVLIDRFGQELSRQHKRLVKIAA 275 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I VER S K +++G G+ +K I EA++E+ + L+ V L L+VKV+ W D Sbjct: 276 TIVVERDSHKMMVIGDKGERLKRIGTEARQELEKQLDAKVFLELWVKVRSGWADD 330 >gi|261337358|ref|ZP_05965242.1| GTP-binding protein Era [Bifidobacterium gallicum DSM 20093] gi|270277736|gb|EFA23590.1| GTP-binding protein Era [Bifidobacterium gallicum DSM 20093] Length = 337 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 154/310 (49%), Gaps = 32/310 (10%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGI++ ++Q+V +DTPG Sbjct: 27 TRSGFVAVVGRPNVGKSTLINALLGTQIAIASSRPETTRKAIRGILTTNDAQMVLVDTPG 86 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL----KVNIHDLLKEIAKRSSR--- 132 I + + + + ++ D + ++ + +E+ K + L E A + Sbjct: 87 IHRPRTLLGQRLNDIVDESLADCDAIAFLLPADQEIGPGDKRILSRLRAEFAHKRDDGSF 146 Query: 133 -----LILILNKIDCVKPERLLEQAEIANKLVFIEK------TFMVSATKGHGCDDVLNY 181 LI +L KID L++ + NKL+ I + VSA K ++V N Sbjct: 147 SWKVPLIGVLTKIDE------LDRGTLINKLIEINEFADFTDIVPVSALKDDNIEEVRNV 200 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE------ 235 L LP P +Y A+QI++ AE+ R L+ E+P+S VV + E Sbjct: 201 LIEHLPEGPQMYPAEQITEERPEETIAELIRGAFLEELNDELPHSLAVVVDSIEYPIDEE 260 Query: 236 --EKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 E+ +G + IYVER SQK I++G +++ + + + + I+ L + VK Sbjct: 261 TGERYNGKATVMVSIYVERDSQKPIIIGHKAEHLVRVKKKLRTAVNRIVGCKAQLDMHVK 320 Query: 294 VQKDWGHDPK 303 V K W DPK Sbjct: 321 VAKGWQSDPK 330 >gi|302024113|ref|ZP_07249324.1| GTP-binding protein Era [Streptococcus suis 05HAS68] Length = 255 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 134/238 (56%), Gaps = 3/238 (1%) Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 GI + +E QIVF+DTPGI K + M+ ++ST++ D V +V + + + Sbjct: 2 GIYTTEEEQIVFIDTPGIHKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMI 61 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 ++ + + +IL++NKID V P++LLEQ + + + ++ +SAT+G+ + ++ L Sbjct: 62 MERLKQAKVPVILVVNKIDKVHPDQLLEQIDDFRQQMDFKEIVPISATQGNNVNRLMEIL 121 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDG 240 L + ADQI+D P +E+ REK+ +EIP+S VV E K +E D Sbjct: 122 KENLDEGFQYFPADQITDHPERFLVSEMIREKVLHLTREEIPHSVAVVIESMKRDEFTD- 180 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + IR I VER SQK I++GK G +K I A+++I +L V L +VKV+K+W Sbjct: 181 KVHIRATIMVERDSQKGIIIGKQGAMLKKIGSMARRDIELMLGDKVFLETWVKVKKNW 238 >gi|331010047|gb|EGH90103.1| GTPase Era [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 300 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRRTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGDRIKRIGSDARRDMELLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|144575090|gb|AAZ43799.2| GTP-binding protein ERA [Mycoplasma synoviae 53] Length = 295 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 149/281 (53%), Gaps = 5/281 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG NAGKS+L+N +G +SIVT QTTR+ + G+ +E QI+F+DTPGI K Sbjct: 11 VTIVGRPNAGKSSLLNTILGYNLSIVTPVAQTTRNQITGVYTEGNLQIIFIDTPGIHKPK 70 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE-LKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ T D+V + + E LK ++ L E K + ++ K+D V Sbjct: 71 SLFGEHLNKEAFDTFSSVDLVLFLSPADEEVLKGDLFIL--EKLKNVKNKVAVITKLDKV 128 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL-APWVYSADQISDLP 202 L + ++ + + K + ++ + D L L + Y+ D ++D Sbjct: 129 NSRPQLLKDKVNSLMEHDFKEIVATSIENEESIDSLVQLIEKYSYPGDFQYAEDDVTDKS 188 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 + T EI RE +L E+P+S V E +EE ++ +L+ +IYV + SQK +++GK Sbjct: 189 VLFITKEIIRECAINNLSDELPHSIYVEIENFEEDEN-FLLVEGIIYVTKDSQKGMLIGK 247 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 N IK I A+ +I+ E+ V+L L VKV K+W DPK Sbjct: 248 NASMIKKIGQLARNKISSQFEKRVNLFLKVKVSKNWQKDPK 288 >gi|296158233|ref|ZP_06841065.1| GTP-binding protein Era [Burkholderia sp. Ch1-1] gi|295891569|gb|EFG71355.1| GTP-binding protein Era [Burkholderia sp. Ch1-1] Length = 287 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 151/288 (52%), Gaps = 21/288 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+N VG KVSI + K QTTR + GI + +++Q +F+DTPG F Sbjct: 1 MVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K S ++ + R ST+ D + V+++ R + +L I S +LI NK+D Sbjct: 60 KHSGALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPP-SVPTLLIANKLD 117 Query: 142 CVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW---VYS 194 V + ++Q +K I V + H DD+ + + P P +Y Sbjct: 118 RVSDKDSLFPFMQQVSALHKFAEI-----VPLSAKH-PDDIKRLMATVKPFLPEGAPIYG 171 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERP 253 D ++D AEI REK+F E+PY+S V+ +K+E +G + I I V+R Sbjct: 172 EDDLTDRSERFLAAEILREKVFRWTGDELPYTSTVLIDKFE--TEGRLRRIFATIMVDRD 229 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + K +++G+ G +K IS EA+ ++ + + PV+L F+KV+ W + Sbjct: 230 THKAMIIGQKGAKLKQISTEARLDMERLFDGPVYLETFIKVKSGWADN 277 >gi|294786873|ref|ZP_06752127.1| GTP-binding protein Era [Parascardovia denticolens F0305] gi|315226509|ref|ZP_07868297.1| GTP-binding protein Era [Parascardovia denticolens DSM 10105] gi|294485706|gb|EFG33340.1| GTP-binding protein Era [Parascardovia denticolens F0305] gi|315120641|gb|EFT83773.1| GTP-binding protein Era [Parascardovia denticolens DSM 10105] Length = 352 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 157/309 (50%), Gaps = 32/309 (10%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +A+VG N GKSTL+N VG +V+I + K +TTR +R IV+ + Q+V +DTPG Sbjct: 42 RSGFIAVVGRPNVGKSTLINAIVGKQVAITSSKPETTRKAIRAIVTTDDCQLVLVDTPGF 101 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--------- 131 + + + + ++ D V ++ + +E+ +L+ + + S Sbjct: 102 HKPRTLLGQKLNDIVDESLADVDAVAFLLPADQEIGPGDKRILQRLQQNFSYKNEQGEWV 161 Query: 132 ---RLILILNKIDCVKPERLLEQAEIANKLVFIE------KTFMVSATKGHGCDDVLNYL 182 ++ +L KID +K +AE+ NK++ ++ + +VSA D+V++ Sbjct: 162 WRKPVVGVLTKIDNLK------KAELVNKIIELDQFGHFSQIVLVSALMKDNVDEVVSVF 215 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE------- 235 S +P P +Y QIS+ P AE+ R L E+P+S VV + E Sbjct: 216 ASLVPEGPQLYPTAQISEEPPKETIAELIRGSFLEELDDELPHSLAVVVDSVEYPEDEDE 275 Query: 236 -EKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 E++D +++ IYVER SQK I+LGK+ ++ + + + + I+ + L L VKV Sbjct: 276 EEREDEKVVVHVSIYVERDSQKPIILGKHACHLVNVKKKLRTPVNRIIGRKSVLDLHVKV 335 Query: 295 QKDWGHDPK 303 K+W DPK Sbjct: 336 AKNWQSDPK 344 >gi|94985925|ref|YP_605289.1| GTP-binding protein Era [Deinococcus geothermalis DSM 11300] gi|189037266|sp|Q1IXB4|ERA_DEIGD RecName: Full=GTPase Era gi|94556206|gb|ABF46120.1| GTP-binding protein Era [Deinococcus geothermalis DSM 11300] Length = 309 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 134/283 (47%), Gaps = 3/283 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G VA+VG N GKSTL+N F+ KV+ + + QTTR VRGI S QIVF+DTPG+ Sbjct: 17 AGFVAIVGKPNVGKSTLLNAFLNTKVAPTSPRPQTTRRGVRGIYSTDTQQIVFVDTPGLH 76 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 KD+ K M + S + D + VVD + +++ L LI NK+D Sbjct: 77 KPKDALGKYMNQEVQSALADVDAILWVVDLRHPPTEEDELVARQVRDLPKPLFLIGNKVD 136 Query: 142 CVK-PERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K P+ + +A + + + + + + + LP P+ + Sbjct: 137 AAKYPDEAMRLYRALLEGRTGETHERMLSAQNSPQAVAALREQILDALPENPFFFPRSSA 196 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 SD + AEI RE+ L +E+PY+ W E++DG I + VE+ + K + Sbjct: 197 SDQTREQWAAEIIREEAMKRLREELPYAVATRVTNWTEREDGLQRIEAELIVEKNAHKGM 256 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ++G G+ ++ I A+K++ L V L L V V W D Sbjct: 257 VIGAGGKMLREIGQAARKQLEVFLNCKVFLGLEVIVIPGWRED 299 >gi|57167682|ref|ZP_00366822.1| GTP-binding protein Era [Campylobacter coli RM2228] gi|305433189|ref|ZP_07402345.1| GTP-binding protein Era [Campylobacter coli JV20] gi|57020804|gb|EAL57468.1| GTP-binding protein Era [Campylobacter coli RM2228] gi|304443890|gb|EFM36547.1| GTP-binding protein Era [Campylobacter coli JV20] Length = 291 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 154/282 (54%), Gaps = 5/282 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV E QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMNGEDQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K + ++ +I+ + ++ D++ V +K + + L K I++LNK+ Sbjct: 62 HESKATLNQFLIQSAIKSMGDCDVILFVASIFDSVK-DYENFLSLNPKVPH--IIVLNKV 118 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D LL++ E A + + S K + +LN LC LP + Y ++ ++ Sbjct: 119 DLADNGTLLKKLNEYAKFSKYFKAILPYSCKKKNYQKPLLNELCKLLPEHEYFYDSEFLT 178 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 E E ++ +L +E+PYS ++ + +E + I+ Q+I + S K ++ Sbjct: 179 PSSQKDIFREFILESIYENLSEELPYSCEIMIKNTKETSNLFIIDAQII-TDTNSHKAML 237 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +GK+G +K I +A+ +I+++++ V L LFV V+K+W D Sbjct: 238 IGKDGTTLKRIGKDARFKISKLIQNKVLLKLFVIVKKNWQKD 279 >gi|307730526|ref|YP_003907750.1| GTP-binding protein Era [Burkholderia sp. CCGE1003] gi|307585061|gb|ADN58459.1| GTP-binding protein Era [Burkholderia sp. CCGE1003] Length = 287 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 148/284 (52%), Gaps = 13/284 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+N VG KVSI + K QTTR + GI + +++Q +F+DTPG F Sbjct: 1 MVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K S ++ + R ST+ D + V+++ R + +L I S +LI NK+D Sbjct: 60 KHSSALNRSLNRAVTSTLTAVDAILFVIEAGR-FGADDQKVLDLIPP-SVPTLLIANKLD 117 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW---VYSADQI 198 V + L ++ + + DD+ + + P P +Y D + Sbjct: 118 RVSDKDSL--YPFMQQMSALRPFNEIVPLSAKNPDDIKRLMATVKPYLPEGAPIYGEDDL 175 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQKK 257 +D AEI REK+F E+PY+S V+ +K+E +G + I I VER + K Sbjct: 176 TDRSERFLAAEILREKVFRWTGDELPYTSTVLIDKFE--TEGRLRRIFATILVERDTHKA 233 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++G+ G +K IS EA+ ++ ++ + PV+L F+KV+ W + Sbjct: 234 MIIGQKGAKLKQISSEARLDMEKLFDGPVYLETFIKVKSGWADN 277 >gi|152993265|ref|YP_001358986.1| GTP-binding protein Era [Sulfurovum sp. NBC37-1] gi|151425126|dbj|BAF72629.1| GTP-binding protein Era [Sulfurovum sp. NBC37-1] Length = 300 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 155/301 (51%), Gaps = 7/301 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FNE K ++++G VA+VG NAGKSTL+N VG K+++V+ K Q TR + IV Sbjct: 1 MFNEGKK----DTKAGFVAVVGRPNAGKSTLLNHLVGEKLAMVSKKAQATRKRMNIIVMH 56 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +QI+F+DTPGI + +K M+ + + AD++ + ++ L Sbjct: 57 ENAQIIFVDTPGIHEKERLLNKFMLDEALKAMGDADLIVFLAPVTDKI-TEYEKFLALNE 115 Query: 128 KRSSRLILILNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++++ I++L K+D VK +L++ E E S K G +L+ + L Sbjct: 116 SKNTKHIVVLTKMDHVKQGDILKKLGEYQKYQDRFEAIIPFSVNKKVGRKQLLDEITKHL 175 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQ 246 P +P++Y + ++ + E+ RE +F +L EIPY S V EK EE D + Sbjct: 176 PESPFLYDTEILTTENIRDIYKELIRESIFENLSDEIPYESDVTIEKIEE-SDTMDKVYA 234 Query: 247 VIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCP 306 I VE+ +QK +++G+ G IK + A++++ + + L L V V+K W + + Sbjct: 235 TIVVEKETQKGMIVGQRGSGIKRVGKLAREQMEFFSGKKIFLDLHVAVKKGWSKNRESLE 294 Query: 307 Q 307 + Sbjct: 295 E 295 >gi|315637675|ref|ZP_07892880.1| GTP-binding protein Era [Arcobacter butzleri JV22] gi|315478022|gb|EFU68750.1| GTP-binding protein Era [Arcobacter butzleri JV22] Length = 294 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 151/285 (52%), Gaps = 8/285 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 ++ G V++VG NAGKS+L+N VG K+++V+HK TR IV ++ Q++F+DTPG Sbjct: 2 TKCGYVSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFIDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + ++ M+ + + D++ + K++ ++ E K++ + IL+L K Sbjct: 62 IHETEKLLNQYMLDEALKAMGDCDLILYLAPVTD--KISYYEDFLEKNKKNVKHILLLTK 119 Query: 140 IDCVKPERL---LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 ID V + L L++ E N E VS K D+L + LP P++Y + Sbjct: 120 IDFVSADELMLKLKEYEKYNDKY--EAIIPVSIKKATKKADILGEVVKYLPEHPYLYDPE 177 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++ + E RE +F ++ EIPY + V+ K EEK + + I+ I V++ +QK Sbjct: 178 IMTTEHLRDIFKEFIRESIFENISDEIPYEADVIVNKVEEKPNVDV-IKATIIVQKDTQK 236 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK IK I +A+ +I ++ + L LFV ++K W D Sbjct: 237 GMIIGKGATAIKRIGRDARMKIEKLTGKKCFLELFVSIKKGWTKD 281 >gi|157737929|ref|YP_001490613.1| GTP-binding protein Era [Arcobacter butzleri RM4018] gi|157699783|gb|ABV67943.1| GTP-binding protein Era-like protein [Arcobacter butzleri RM4018] Length = 294 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 151/285 (52%), Gaps = 8/285 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 ++ G V++VG NAGKS+L+N VG K+++V+HK TR IV ++ Q++F+DTPG Sbjct: 2 TKCGYVSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFIDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + ++ M+ + + D++ + K++ ++ E K++ + IL+L K Sbjct: 62 IHETEKLLNQYMLDEALKAMGDCDLILYLAPVTD--KISYYEDFLEKNKKNVKHILLLTK 119 Query: 140 IDCVKPERL---LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 ID V + L L++ E N E VS K D+L + LP P++Y + Sbjct: 120 IDFVSADELMLKLKEYEKYNDKY--EAIIPVSIKKATKKADILGEVVKYLPEHPYLYDPE 177 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++ + E RE +F ++ EIPY + V+ K EEK + + I+ I V++ +QK Sbjct: 178 IMTTEHLRDIFKEFIRESIFENISDEIPYEADVIVNKVEEKPNVDV-IKATIIVQKDTQK 236 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK IK I +A+ +I ++ + L LFV ++K W D Sbjct: 237 GMIIGKGATAIKRIGRDARMKIEKLTGKKCFLELFVSIKKGWTKD 281 >gi|319440588|ref|ZP_07989744.1| GTPase Era [Corynebacterium variabile DSM 44702] Length = 325 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 155/296 (52%), Gaps = 7/296 (2%) Query: 14 DF-VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 DF D RSG V+ VG N GKSTL N VG K++I + +TTR +RGIV ++SQ+ Sbjct: 24 DFSAPDGFRSGFVSFVGRPNTGKSTLTNALVGEKIAITADQPETTRHPIRGIVHRRDSQV 83 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKR 129 + +DTPG+ + + + + T D++ L + + ++ I D ++ A + Sbjct: 84 IVVDTPGLHRPRTLLGERLNEVVKETYADVDVIGLCIPADEKIGPGDRWILDAVRASAPK 143 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + +I I+ K+D +++ Q + L+ + VSA + D +L+ + LP Sbjct: 144 TP-VIGIVTKLDKTSKDQVGAQLMELHDLLDGGEVIPVSAKEQVQLDVLLDVITEQLPEG 202 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--WEEKKDGSILIRQV 247 P Y D I+D +E+ RE LH E+P+S V ++ E+++G + I V Sbjct: 203 PKFYPDDHITDDDRDTRMSELIREAALSGLHDELPHSVAVQIDEVFPSEEREGVLEIHAV 262 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++ER QK+I+ GK+ + I ++K + ++L Q V L L +KV K+W DPK Sbjct: 263 IFLEREGQKRILRGKDNRRWGRIIHNSRKSLIDLLGQNVFLDLRMKVAKNWQSDPK 318 >gi|330957806|gb|EGH58066.1| GTPase Era [Pseudomonas syringae pv. maculicola str. ES4326] Length = 300 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q V++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAVYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENEHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGDRIKRIGSDARRDMELLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|213971118|ref|ZP_03399237.1| GTP-binding protein Era [Pseudomonas syringae pv. tomato T1] gi|301381865|ref|ZP_07230283.1| GTP-binding protein Era [Pseudomonas syringae pv. tomato Max13] gi|302063245|ref|ZP_07254786.1| GTP-binding protein Era [Pseudomonas syringae pv. tomato K40] gi|213924107|gb|EEB57683.1| GTP-binding protein Era [Pseudomonas syringae pv. tomato T1] gi|330877434|gb|EGH11583.1| GTPase Era [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964519|gb|EGH64779.1| GTPase Era [Pseudomonas syringae pv. actinidiae str. M302091] gi|331015602|gb|EGH95658.1| GTPase Era [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 300 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGDRIKRIGSDARRDMEVLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|28871358|ref|NP_793977.1| GTP-binding protein Era [Pseudomonas syringae pv. tomato str. DC3000] gi|38257314|sp|Q87XG2|ERA_PSESM RecName: Full=GTPase Era gi|28854609|gb|AAO57672.1| GTP-binding protein Era [Pseudomonas syringae pv. tomato str. DC3000] Length = 300 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGTVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGDRIKRIGSDARRDMEVLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|330889505|gb|EGH22166.1| GTPase Era [Pseudomonas syringae pv. mori str. 301020] Length = 300 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 156/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+ G N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIFGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH D + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLDALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGDRIKRIGSDARRDMELLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|66047177|ref|YP_237018.1| GTP-binding protein Era [Pseudomonas syringae pv. syringae B728a] gi|71738169|ref|YP_276083.1| GTP-binding protein Era [Pseudomonas syringae pv. phaseolicola 1448A] gi|289628145|ref|ZP_06461099.1| GTP-binding protein Era [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649889|ref|ZP_06481232.1| GTP-binding protein Era [Pseudomonas syringae pv. aesculi str. 2250] gi|289676657|ref|ZP_06497547.1| GTP-binding protein Era [Pseudomonas syringae pv. syringae FF5] gi|81307971|sp|Q4ZPE2|ERA_PSEU2 RecName: Full=GTPase Era gi|123635348|sp|Q48EV4|ERA_PSE14 RecName: Full=GTPase Era gi|63257884|gb|AAY38980.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Pseudomonas syringae pv. syringae B728a] gi|71558722|gb|AAZ37933.1| GTP-binding protein Era [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325569|gb|EFW81631.1| GTP-binding protein Era [Pseudomonas syringae pv. glycinea str. B076] gi|320327145|gb|EFW83159.1| GTP-binding protein Era [Pseudomonas syringae pv. glycinea str. race 4] gi|330871240|gb|EGH05949.1| GTPase Era [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879243|gb|EGH13392.1| GTPase Era [Pseudomonas syringae pv. glycinea str. race 4] gi|330950055|gb|EGH50315.1| GTPase Era [Pseudomonas syringae Cit 7] gi|330973033|gb|EGH73099.1| GTPase Era [Pseudomonas syringae pv. aceris str. M302273PT] gi|330989031|gb|EGH87134.1| GTPase Era [Pseudomonas syringae pv. lachrymans str. M301315] Length = 300 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGDRIKRIGSDARRDMELLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|71894402|ref|YP_278510.1| GTP-binding protein Era [Mycoplasma synoviae 53] Length = 283 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 148/281 (52%), Gaps = 5/281 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N +G +SIVT QTTR+ + G+ +E QI+F+DTPGI K Sbjct: 1 MVGRPNAGKSSLLNTILGYNLSIVTPVAQTTRNQITGVYTEGNLQIIFIDTPGIHKPKSL 60 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRE-LKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 + + + + ++ T D+V + + E LK ++ L E K + ++ K+D V Sbjct: 61 FGEHLNKEAFDTFSSVDLVLFLSPADEEVLKGDLFIL--EKLKNVKNKVAVITKLDKVNS 118 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL-APWVYSADQISDLPMF 204 L + ++ + + K + ++ + D L L + Y+ D ++D + Sbjct: 119 RPQLLKDKVNSLMEHDFKEIVATSIENEESIDSLVQLIEKYSYPGDFQYAEDDVTDKSVL 178 Query: 205 HFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNG 264 T EI RE +L E+P+S V E +EE ++ +L+ +IYV + SQK +++GKN Sbjct: 179 FITKEIIRECAINNLSDELPHSIYVEIENFEEDEN-FLLVEGIIYVTKDSQKGMLIGKNA 237 Query: 265 QNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IK I A+ +I+ E+ V+L L VKV K+W DPK Sbjct: 238 SMIKKIGQLARNKISSQFEKRVNLFLKVKVSKNWQKDPKIL 278 >gi|302186918|ref|ZP_07263591.1| GTP-binding protein Era [Pseudomonas syringae pv. syringae 642] Length = 300 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGTVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGDRIKRIGSDARRDMELLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|308189663|ref|YP_003922594.1| GTP-binding protein [Mycoplasma fermentans JER] gi|319776823|ref|YP_004136474.1| gtp-binding protein era [Mycoplasma fermentans M64] gi|307624405|gb|ADN68710.1| GTP-binding protein [Mycoplasma fermentans JER] gi|318037898|gb|ADV34097.1| GTP-binding protein Era [Mycoplasma fermentans M64] Length = 289 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 8/284 (2%) Query: 24 CVA-LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 C+A ++G N GKS+L+N+ V V+IVT+ QTTR + G+ +E + Q+VF+DTPGI Sbjct: 4 CLASIIGRPNVGKSSLINQIVKYDVAIVTNVPQTTRDQIVGVYNEDDFQLVFVDTPGIHK 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKID 141 + + + + ++ + K D CL+ S KV D L+ + K + I +++KID Sbjct: 64 PLNLLGEALNKSAFESTKDVD--CLIFLSPVNEKVGQGDILILDKIKNTKNKIAVISKID 121 Query: 142 CV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 KPE + E+ E +K F +K VS + ++++ + Y D I+D Sbjct: 122 LAKKPEEIQEKIEELSKYSF-DKILSVSRNNENSIEELIKVIKQYAYEGEPFYDEDYITD 180 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 M EI RE L +E+P+S V + E+ D I I +IYV++ SQK +++ Sbjct: 181 KSMRFLAKEIIRESAINLLREELPHSIAVEVIDFIEEDD--IKINAIIYVKKASQKGMVI 238 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 GKNGQ IK I A+K++ + V L L VK+ W +D K Sbjct: 239 GKNGQMIKQIGTNARKKMMSQFDSKVELNLKVKIANKWINDGKA 282 >gi|171463193|ref|YP_001797306.1| GTP-binding protein Era [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192731|gb|ACB43692.1| GTP-binding protein Era [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 297 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 154/299 (51%), Gaps = 44/299 (14%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK--DSYHKLM 91 GKSTL+N VG K+SI + K QTTR + GI + +E+Q +F+DTPG F + ++ +K + Sbjct: 2 GKSTLLNALVGQKISITSRKAQTTRHRILGIQNREEAQFIFIDTPG-FQTRLMNTLNKAL 60 Query: 92 IRLSWSTIKHADIVCLVV-------DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 R + ++ ++ C VV D + LK+ DL ++L+LNK+D Sbjct: 61 NRTVTTALQDVNVACFVVEAGYFGEDDKKVLKLLPDDL---------PVVLVLNKLDLFN 111 Query: 145 P--ERLLEQAEI-------------------ANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + LE+ + K F E M + + G+ + +L+ L Sbjct: 112 SHFQTPLERDQALLNFIKDMARPWCELGGHEDQKCEFAEIVPMSAKSSGN-IERLLDVLE 170 Query: 184 STLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI- 242 LP AP VY D I+D AEI REK+F +E+PY+S VV +++ K DG + Sbjct: 171 GYLPDAPAVYDGDTITDRSERFLAAEILREKVFRFTGEELPYTSTVVIDQF--KMDGKMR 228 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I I V+R S K +++G+ G+ +K IS +A+ ++ ++ + V L +VKV++ W D Sbjct: 229 RIAAAILVDRDSHKAMIIGQKGERLKKISTDARIDMEKLFDGKVFLETWVKVKRGWADD 287 >gi|325972144|ref|YP_004248335.1| GTP-binding protein Era-like-protein [Spirochaeta sp. Buddy] gi|324027382|gb|ADY14141.1| GTP-binding protein Era-like-protein [Spirochaeta sp. Buddy] Length = 293 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 143/286 (50%), Gaps = 12/286 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G +AGKSTL+N KVSI QTTR+ +RGI ++ Q++F DTPG Sbjct: 4 ATVAIIGRPSAGKSTLLNTICEMKVSITASTPQTTRNAIRGIYTDARGQLIFTDTPGFHL 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ + +K + + +++ +D V ++DS R L+ IAK + +I ++NK D Sbjct: 64 SEKTLNKRLQDTALKSLEESDAVLYIIDSKRSAGEEELALVSHIAKIKTPVICVINKADI 123 Query: 143 VKPERLLEQAEIANKLVFIE-----KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ++ + E A K E SA G D++L L P +Y D Sbjct: 124 IR-----DSEEEAVKAFLAEHLPDRPVLKASAKLDEGVDEILIELFKIAPEGELLYPPDA 178 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE-KKDGSILIRQVIYVERPSQK 256 +D + +EI REK + +EIP++ V E E + +I IR I VER +QK Sbjct: 179 YTDQNLEFRISEIIREKAINLVTEEIPHAIYVTIEDIEHTEATNTIWIRAAIIVERDTQK 238 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILE-QPVHLILFVKVQKDWGHD 301 I++GK G NI I A+ EI +I + + L L VK Q W ++ Sbjct: 239 GIVVGKGGANITKIRKGAEPEIRQIFSGKKLRLDLRVKAQDKWRNN 284 >gi|238809602|dbj|BAH69392.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 290 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 8/284 (2%) Query: 24 CVA-LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 C+A ++G N GKS+L+N+ V V+IVT+ QTTR + G+ +E + Q+VF+DTPGI Sbjct: 5 CLASIIGRPNVGKSSLINQIVKYDVAIVTNVPQTTRDQIVGVYNEDDFQLVFVDTPGIHK 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKID 141 + + + + ++ + K D CL+ S KV D L+ + K + I +++KID Sbjct: 65 PLNLLGEALNKSAFESTKDVD--CLIFLSPVNEKVGQGDILILDKIKNTKNKIAVISKID 122 Query: 142 CV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 KPE + E+ E +K F +K VS + ++++ + Y D I+D Sbjct: 123 LAKKPEEIQEKIEELSKYSF-DKILSVSRNNENSIEELIKVIKQYAYEGEPFYDEDYITD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 M EI RE L +E+P+S V + E+ D I I +IYV++ SQK +++ Sbjct: 182 KSMRFLAKEIIRESAINLLREELPHSIAVEVIDFIEEDD--IKINAIIYVKKASQKGMVI 239 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 GKNGQ IK I A+K++ + V L L VK+ W +D K Sbjct: 240 GKNGQMIKQIGTNARKKMMSQFDSKVELNLKVKIANKWINDGKA 283 >gi|170695423|ref|ZP_02886568.1| GTP-binding protein Era [Burkholderia graminis C4D1M] gi|170139614|gb|EDT07797.1| GTP-binding protein Era [Burkholderia graminis C4D1M] Length = 287 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 147/282 (52%), Gaps = 9/282 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+N VG KVSI + K QTTR + GI + ++ Q +F+DTPG F Sbjct: 1 MVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDVQYIFVDTPG-FQT 59 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K S ++ + R ST+ D + V+++ R + +L I S +LI NK+D Sbjct: 60 KHSGALNRSLNRAVTSTLTSVDAILFVIEAGR-FGPDDQKVLDLIPP-SVPTLLIANKLD 117 Query: 142 CVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 V + L + + L + +SA ++ + LP +Y D ++D Sbjct: 118 RVSDKDSLFPFMQQMSALRPFNEIVPLSAKNPDDIKRLMATIKPYLPEGAPIYGEDDLTD 177 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVIYVERPSQKKIM 259 AEI REK+F E+PY+S V+ +K+E +G + I I VER + K ++ Sbjct: 178 RSERFLAAEILREKVFRWTGDELPYTSTVLIDKFE--TEGRLRRIFATILVERDTHKAMI 235 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +G+ G +K IS EA+ ++ + + P++L F+KV+ W + Sbjct: 236 IGQKGAKLKQISTEARLDMERLFDGPIYLETFIKVKSGWADN 277 >gi|15805673|ref|NP_294369.1| GTP-binding protein Era [Deinococcus radiodurans R1] gi|13959366|sp|Q9RWM0|ERA_DEIRA RecName: Full=GTPase Era gi|6458347|gb|AAF10224.1|AE001922_4 GTP-binding protein Era [Deinococcus radiodurans R1] Length = 311 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 144/308 (46%), Gaps = 19/308 (6%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 +T F+ D + +G VA+VG N GKSTL+N F+G KV+ + + QTTR VRGI Sbjct: 1 MTDFSASPDLQDPTTHAGFVAIVGKPNVGKSTLLNAFLGTKVAPTSPRPQTTRRGVRGIY 60 Query: 66 SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLV-------VDSHRELKVN 118 + Q++F+DTPG+ KD+ K M S + D V V D R + + Sbjct: 61 TLDNRQLIFVDTPGLHKPKDALGKYMNSEVHSALSDVDAVVWVVDLRHPPTDEDRLVANS 120 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVK-PERLLEQA----EIANKLVFIEKTFMVSATKGH 173 + DL K L L+ NK D K PE ++ E + + +T + + + Sbjct: 121 VRDLPKP-------LFLVGNKTDAAKYPEEAMKLYGALLEGRGSDLPVSETMLSAQNSVN 173 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK 233 + L LP P+ + SD + AEI RE+ L E+PY+ + Sbjct: 174 AVATLREQLLEVLPENPFFFPQGAASDQSREMWAAEIIREEAMKKLRDELPYAVATRVNR 233 Query: 234 WEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 W E++DG I I VE+ + K +++G G+ ++ I A+K++ L V+L L V Sbjct: 234 WTEREDGLQRIEGEIIVEKNAHKGMVIGAGGKQLREIGQAARKQLEVFLNHKVYLGLEVI 293 Query: 294 VQKDWGHD 301 V W D Sbjct: 294 VIPGWRED 301 >gi|282851787|ref|ZP_06261150.1| KH domain protein [Lactobacillus gasseri 224-1] gi|282557029|gb|EFB62628.1| KH domain protein [Lactobacillus gasseri 224-1] Length = 181 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 103/167 (61%) Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++NKID V P++LL + L + +SA++G+ +++ + LP P Y A Sbjct: 1 MINKIDKVHPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAKYLPEGPQFYDA 60 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 DQ++D P + AE+ RE++ H+E+P+++ VV ++ + + G + I IYVERP Q Sbjct: 61 DQLTDRPEYFIVAELIREQVLKLTHEEVPHATAVVVDRMRDHEGGKLQIEATIYVERPGQ 120 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDP 302 K I++GK GQ +K I + A++EI +L + V+L L+VKVQK+W DP Sbjct: 121 KGIIIGKKGQMLKQIGIAARQEIEALLGEKVNLRLWVKVQKNWRSDP 167 >gi|332705058|ref|ZP_08425143.1| GTP-binding protein Era [Lyngbya majuscula 3L] gi|332356235|gb|EGJ35690.1| GTP-binding protein Era [Lyngbya majuscula 3L] Length = 338 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 152/284 (53%), Gaps = 4/284 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D +SG VA+VG N GKSTL+N+ VG K++I + QTTR+ +RGI++ E+Q++F+DT Sbjct: 40 DGFKSGFVAIVGRPNVGKSTLMNKLVGQKIAITSPVAQTTRNRLRGILTTPEAQLIFVDT 99 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI K++++ + I+ D+V LVVDS E ++ ++ + +IL + Sbjct: 100 PGIHKPHHQLGKVLVKNAQIAIELVDVVLLVVDSTVEAGGGDRFIVDLLSHTKTPVILGV 159 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTLPLAPWVYS 194 NK D E + + + + + V SA D + L L P+ Y Sbjct: 160 NKSDIQPRHSRGESIDASYAKLATAQGWEVVKFSALTADRLDLLQQKLIERLEPGPYYYP 219 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++D P E+ RE++ L +E+P+S + + EE+ + I I VER S Sbjct: 220 PDFLTDQPERFIMGELIREQILLLTREEVPHSVAITIDLVEEQPKIT-RIFATINVERDS 278 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 QK I++GK G +K I A++++ +++ V+L LFVKV+ W Sbjct: 279 QKGILIGKKGNMLKQIGTAARQQLQKLVAGQVYLELFVKVKPKW 322 >gi|298488678|ref|ZP_07006707.1| GTP-binding protein Era [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156751|gb|EFH97842.1| GTP-binding protein Era [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 300 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QK+I++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKRIIIGDKGDRIKRIGSDARRDMELLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|237798714|ref|ZP_04587175.1| GTPase Era [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806147|ref|ZP_04592851.1| GTPase Era [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021567|gb|EGI01624.1| GTPase Era [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027260|gb|EGI07315.1| GTPase Era [Pseudomonas syringae pv. oryzae str. 1_6] Length = 300 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 153/289 (52%), Gaps = 6/289 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVEGPVILAIN 125 Query: 139 KIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K D ++ + L+ E + +SA GH + + + + + LP + DQ Sbjct: 126 KTDRIEDKSDLMPHLEWLQGQLPNASIMPISAQHGHNLEALESLIATHLPENDHFFPEDQ 185 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQK 256 I+D AE+ REK+ L E+PY V E++ K+ G L I +I VER QK Sbjct: 186 ITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVERDGQK 243 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 KI++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 244 KIIIGDKGDRIKRIGSDARRDMELLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|291002091|ref|XP_002683612.1| predicted protein [Naegleria gruberi] gi|284097241|gb|EFC50868.1| predicted protein [Naegleria gruberi] Length = 478 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 164/317 (51%), Gaps = 32/317 (10%) Query: 5 EITFFNEHKDFVQ------DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR 58 E+T N HK F + NS+ V +VG NAGKST++NRFV KVS V+ K QTTR Sbjct: 167 ELTLENLHKIFKRTAEHSPKNSKVVKVTIVGNPNAGKSTILNRFVSRKVSAVSPKTQTTR 226 Query: 59 SIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMI-RLSWSTIKH-ADIVCLV-------- 108 S +++ +E+QIVF DTPGI N + Y +L + + TI+ + CL Sbjct: 227 SRSLAVLNNEENQIVFFDTPGILNME--YSRLKTDKTARETIEGLQEESCLTLDLADVVL 284 Query: 109 --VDSHRELKV--NIHDLLKEIAKRSSRLIL--ILNKIDCVKPERLLE-QAEIANKLVFI 161 +D + L+ +I DL+ AK+ + L ++NK D V+ +R E + E+ VF Sbjct: 285 LLIDVTKPLREIDHILDLIANYAKKDKQFHLCALINKSDMVEMDRCEEYRFELVRSGVF- 343 Query: 162 EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS-DLPMFHFTAEITREKLFLHLH 220 + F++SA G+G + V+ YLC W + DQ++ + EI REKL+ + Sbjct: 344 NQAFIISAKTGYGMESVIKYLCEKTRDRKWFFDKDQVTPGITTMDTIKEIIREKLYRRCN 403 Query: 221 KEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP-SQKKIMLGKNGQNIKTISLEAKKEIA 279 KEIPY + + K E K G LI + R SQ KI+ Q++K I A ++ Sbjct: 404 KEIPYQTVINITKLELSKSGEHLIIDADLIARTNSQLKII----QQSLKYIHTYALADLH 459 Query: 280 EILEQPVHLILFVKVQK 296 I + +HL +KV++ Sbjct: 460 RIYKVNIHLNFGLKVKE 476 >gi|302132833|ref|ZP_07258823.1| GTP-binding protein Era [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 300 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G V++VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVSIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKKI++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 239 RDGQKKIIIGDKGDRIKRIGSDARRDMEVLFDSKVMLNLWVKVKGGWSDDERAL 292 >gi|297243339|ref|ZP_06927272.1| GTPase [Gardnerella vaginalis AMD] gi|296888586|gb|EFH27325.1| GTPase [Gardnerella vaginalis AMD] Length = 347 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 26/306 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGIV+ +Q+V +DTPGI Sbjct: 38 RSGFVAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGIVTTDNAQMVLVDTPGI 97 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSR---- 132 + + + + ++ D + ++ + +E+ + L + AK+ + Sbjct: 98 HRPRTLLGQRLNDIVDESLSDVDAIAFLLPADQEIGPGDRRILSRLRSDFAKKDEKGNWT 157 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + L+E + VSA + D+V N L LP Sbjct: 158 WKVPLIGIVTKIDTLSRSELVEHLLQIQQFADFTDIVPVSALERDNVDEVKNVLIQNLPE 217 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE-----------KWEEK 237 P +Y ADQ+S+ +E+ R L E+P+S VV + ++++ Sbjct: 218 GPQMYPADQLSEESPESMISELIRGAFLEELDDELPHSLAVVVDDIVYPGGGEDTQYDDN 277 Query: 238 KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKD 297 K +L+ +YVER SQK I++G +++ + + + I L L VKV K Sbjct: 278 K-AHVLVS--VYVERDSQKPIIIGHRAEHLVRVKKRLRTAVNRITGTKAVLELHVKVAKG 334 Query: 298 WGHDPK 303 W DPK Sbjct: 335 WQSDPK 340 >gi|253999488|ref|YP_003051551.1| GTP-binding protein Era [Methylovorus sp. SIP3-4] gi|313201513|ref|YP_004040171.1| GTP-binding protein era [Methylovorus sp. MP688] gi|253986167|gb|ACT51024.1| GTP-binding protein Era [Methylovorus sp. SIP3-4] gi|312440829|gb|ADQ84935.1| GTP-binding protein Era [Methylovorus sp. MP688] Length = 300 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 152/297 (51%), Gaps = 25/297 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R G VA+VG N GKSTL+N +G K+SI + K QTTR + GI + ++Q +F+DTPG Sbjct: 12 RCGTVAIVGRPNVGKSTLLNHILGLKLSITSRKAQTTRHRLLGIHTTDDTQYLFVDTPG- 70 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 F K ++ ++ + + + D+V V++ + + L+ + R+ ++L++N Sbjct: 71 FQQKHVNALNRSLNKTVTQVLAEVDVVLFVIEPMHLGEAD--RLVLNMLPRNKPVLLVVN 128 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM---------VSATKGHGCDDVLNYLCSTLPLA 189 K D + + N L I+ + VSA K D++L + LP Sbjct: 129 KADLM--------GDKGNLLPLIQDFDLEFPFTAIVPVSAKKNLYLDELLQAVRQHLPEQ 180 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI-LIRQVI 248 +Y D+++D AE+ REK F L E+PYS V EK+E +G++ I Sbjct: 181 EAIYGEDELTDKNERFLAAELLREKAFRFLGDEVPYSIAVEIEKFE--MEGNLRRIHAAF 238 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 V++ SQK +++GK G +K IS EA++++ + V L +VKV+ W D + Sbjct: 239 IVDKESQKPMLIGKGGAKLKQISTEARQDMENLFGGKVWLETWVKVKGGWADDERAL 295 >gi|283783324|ref|YP_003374078.1| GTP-binding protein Era [Gardnerella vaginalis 409-05] gi|298252737|ref|ZP_06976531.1| GTPase [Gardnerella vaginalis 5-1] gi|283442229|gb|ADB14695.1| GTP-binding protein Era [Gardnerella vaginalis 409-05] gi|297533101|gb|EFH71985.1| GTPase [Gardnerella vaginalis 5-1] Length = 353 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/305 (28%), Positives = 143/305 (46%), Gaps = 24/305 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RGIV+ +Q+V +DTPGI Sbjct: 44 RSGFVAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGIVTTDNAQMVLVDTPGI 103 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSR---- 132 + + + + ++ D + ++ + +E+ + L + AK+ + Sbjct: 104 HRPRTLLGQRLNDIVDESLADVDAIAFLLPADQEIGPGDRRILSRLRSDFAKKDEKGNWT 163 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 LI I+ KID + L+ + VSA + D+V N L LP Sbjct: 164 WKVPLIGIVTKIDTLSRSELVTHLLQIQQFADFTDIVPVSALERDNVDEVKNVLIQNLPE 223 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS------- 241 P +Y ADQ+S+ +E+ R L E+P+S VV + DG Sbjct: 224 GPQMYPADQLSEESTESMISELIRGAFLEELDDELPHSLAVVVDDIVYPGDGEDTQYEDN 283 Query: 242 ---ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +L+ +YVER SQK I++G +++ + + + I L L VKV K W Sbjct: 284 KAHVLVS--VYVERDSQKPIIIGHRAEHLVRVKKRLRTAVNRITGTKAVLELHVKVAKGW 341 Query: 299 GHDPK 303 DPK Sbjct: 342 QSDPK 346 >gi|304373109|ref|YP_003856318.1| GTP-binding protein era-like protein [Mycoplasma hyorhinis HUB-1] gi|304309300|gb|ADM21780.1| GTP-binding protein era-like protein [Mycoplasma hyorhinis HUB-1] gi|330723266|gb|AEC45636.1| GTPase Era [Mycoplasma hyorhinis MCLD] Length = 292 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 153/285 (53%), Gaps = 7/285 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+++G N+GKST++N + +SIV++K QTTR + GI SE + QIVF+DTPG + Sbjct: 6 VSIIGLPNSGKSTMLNTILDYDLSIVSYKPQTTRDQINGIYSEDDFQIVFVDTPGFQSEN 65 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + K++ + + S+++ D+ + +R+L +L K++ K ++ I IL KID + Sbjct: 66 SLFSKVLNKNAISSLEDIDLALFLHPVNRKLDQTSIELAKKVLKLKNK-IAILTKIDLEE 124 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 ++L Q K + E S D+L + L + + AD ++D PM Sbjct: 125 DNQILAQKANELKQLGFELVLGFSEKYQVSKQDLLEEIKKYLYDSENYFDADFLTDRPMR 184 Query: 205 HFTAEITREKLFLHLHKEIPYSSCVV----TEKWEEKKDGSILIRQVIYVERPSQKKIML 260 EI R+ L L++ +EIP+ ++ E ++EK+ I I +IYV + S I++ Sbjct: 185 FLAKEIIRKHLLLNIEEEIPHQVAIIINDFIENYQEKE--QIYISAMIYVAKKSHIPIVV 242 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 G+NG+ ++ I ++ E+ E L Q V LI VK ++W D K Sbjct: 243 GQNGRMLEKIGKASRIELEEKLGQKVILINKVKESQNWLKDAKLI 287 >gi|224437279|ref|ZP_03658251.1| GTP-binding protein Era [Helicobacter cinaedi CCUG 18818] Length = 318 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 158/285 (55%), Gaps = 14/285 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV--SEKESQIVFLDT 77 +RSG VA +G NAGKSTL+N +G +++V+HK TR ++ IV + +QIVF+DT Sbjct: 26 TRSGFVATLGRPNAGKSTLLNHLLGENLALVSHKANATRKQLQIIVPYAPLNTQIVFVDT 85 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI + + ++ M+ + + D+ + ++K + L E+ + + IL+L Sbjct: 86 PGIHHQEKLLNQYMLSQALKAMGDCDLALYLAPITDDVKH--YQLFLELYQ--GKHILLL 141 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMV----SATKGHGCDDVLNYLCSTLPLAPWVY 193 +K D E +L A++A F +K F+ S KG D +L + S LP +P+ Y Sbjct: 142 SKSDTCSNEAIL--AKMAEYQKF-DKHFLALLPFSVKKGFDRDLLLKSIASFLPQSPFYY 198 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++ + E+ RE LF +L EIPY + V+ +++EE + + ++I VE+ Sbjct: 199 DNELLTPSSIKEIYKEMIRESLFENLSDEIPYEADVMLKRFEEGEKLDRIFAEII-VEKQ 257 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK +++GK G +IK IS A+++I + + V+L L V V K W Sbjct: 258 SQKGVVIGKGGSSIKRISKCAREKILALSPKSVYLKLDVSVYKGW 302 >gi|255322165|ref|ZP_05363311.1| GTP-binding protein Era [Campylobacter showae RM3277] gi|255300538|gb|EET79809.1| GTP-binding protein Era [Campylobacter showae RM3277] Length = 289 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 150/288 (52%), Gaps = 11/288 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG +++G TNAGKS+L+N + AK++IV+HK TR + GIV E QIVF DTPG+ Sbjct: 2 KSGFASIIGRTNAGKSSLLNFLLDAKITIVSHKQNATRRKISGIVMNDEDQIVFTDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNK 139 + + +KLMI + ++ D + + H I D +K + + IL+L K Sbjct: 62 HESNKTLNKLMINEAIKSMGDCDAIVFLAPIHD----GIDDYVKFLNLNPQKPHILVLTK 117 Query: 140 IDCVKPERLLEQAEIANKLVFIEK---TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +D V ++LE+ IA F +K S K +L+ +C LP + Y + Sbjct: 118 VDEVSNAKVLEK--IAQYQKFQDKFTALLPFSVKKQTYKKPLLDEICKLLPEHEYFYDPE 175 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++ E E L+ +L EIPYS+ V+ +K +EK + + I I ER K Sbjct: 176 FLTPTNEREIFREFILEALYDNLSDEIPYSTDVLIDKVKEKPEIT-EIYATIITEREIHK 234 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +++GK+GQ IK I + ++K I+ Q + + L V V+KDW D K Sbjct: 235 SMIIGKSGQTIKRIGINSRKLISNFTGQKIFVKLVVVVKKDWRKDEKT 282 >gi|330937656|gb|EGH41561.1| GTPase Era [Pseudomonas syringae pv. pisi str. 1704B] Length = 291 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 155/291 (53%), Gaps = 16/291 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG+ Sbjct: 1 GYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPGMHK 60 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N + + ++ M + + + +K D+V VVD R + +L+ + +IL +NK D Sbjct: 61 NGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAINKTD 119 Query: 142 CVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 R+ +++++ L +++ +SA GH + + + + S LP + Sbjct: 120 -----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHFFPE 174 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPS 254 DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VER Sbjct: 175 DQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVERDG 232 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 QKKI++G G IK I +A++++ + + V L L+VKV+ W D + Sbjct: 233 QKKIIIGDKGDRIKRIGSDARRDMELLFDSKVMLNLWVKVKGGWSDDERAL 283 >gi|313143734|ref|ZP_07805927.1| GTP-binding protein Era [Helicobacter cinaedi CCUG 18818] gi|313128765|gb|EFR46382.1| GTP-binding protein Era [Helicobacter cinaedi CCUG 18818] Length = 295 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 158/285 (55%), Gaps = 14/285 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV--SEKESQIVFLDT 77 +RSG VA +G NAGKSTL+N +G +++V+HK TR ++ IV + +QIVF+DT Sbjct: 3 TRSGFVATLGRPNAGKSTLLNHLLGENLALVSHKANATRKQLQIIVPYAPLNTQIVFVDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI + + ++ M+ + + D+ + ++K + L E+ + + IL+L Sbjct: 63 PGIHHQEKLLNQYMLSQALKAMGDCDLALYLAPITDDVKH--YQLFLELYQ--GKHILLL 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMV----SATKGHGCDDVLNYLCSTLPLAPWVY 193 +K D E +L A++A F +K F+ S KG D +L + S LP +P+ Y Sbjct: 119 SKSDTCSNEAIL--AKMAEYQKF-DKHFLALLPFSVKKGFDRDLLLKSIASFLPQSPFYY 175 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++ + E+ RE LF +L EIPY + V+ +++EE + + ++I VE+ Sbjct: 176 DNELLTPSSIKEIYKEMIRESLFENLSDEIPYEADVMLKRFEEGEKLDRIFAEII-VEKQ 234 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 SQK +++GK G +IK IS A+++I + + V+L L V V K W Sbjct: 235 SQKGVVIGKGGSSIKRISKCAREKILALSPKSVYLKLDVSVYKGW 279 >gi|154173760|ref|YP_001408329.1| GTP-binding protein Era [Campylobacter curvus 525.92] gi|189037253|sp|A7GYN7|ERA_CAMC5 RecName: Full=GTPase Era gi|112803151|gb|EAU00495.1| GTP-binding protein Era [Campylobacter curvus 525.92] Length = 289 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 5/284 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG V+++G TNAGKS+L+N + K++IV+HK TR + GIV + QI+F+DTPG+ Sbjct: 2 RSGFVSIIGRTNAGKSSLLNALLNEKIAIVSHKQNATRRKINGIVMNEGDQIIFVDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ +KLMI + ++ D + + H + + L K+ IL+L+K+ Sbjct: 62 HESEKILNKLMINEAVKSMGDCDAMIFIASVHDDTS-DYEKFLNLNPKKPH--ILVLSKV 118 Query: 141 DCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D V E+LL++ + N S K +L+ +C LP + Y ++ Sbjct: 119 DEVSNEKLLKKMMQYQNFQSRFTALVPFSIKKQSYQKPLLDEICKLLPEHAYFYDPQFLT 178 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 D + E ++ +L EIPY S V +K EK G I I E+ + K ++ Sbjct: 179 DTNEKEIFRDFILEAIYENLSDEIPYLSDVSVDKVVEKA-GITEIFATIITEKDTHKSMI 237 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +GKNG+ IK I + A+K I + ++L L V V++ W D K Sbjct: 238 IGKNGETIKRIGIFARKLIKNLTNCKIYLKLDVVVKRGWSKDEK 281 >gi|166712832|ref|ZP_02244039.1| GTP-binding protein Era [Xanthomonas oryzae pv. oryzicola BLS256] Length = 279 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 147/276 (53%), Gaps = 8/276 (2%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKDSYHKLMI 92 GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ K + +++M Sbjct: 2 GKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKRAMNRVMN 61 Query: 93 RLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE 150 R + +++ D LV+++ R E +L + ++ ++++ K L Sbjct: 62 RAARGSLEGVDAAVLVIEAGRWDEEDTLAFGVLSDAEVPVVLVVNKVDRLKD-KTALLPF 120 Query: 151 QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEI 210 A+++ F VSA K G + ++ L +P A ++ D+I+D E+ Sbjct: 121 LAQVSEGRTFA-AVHPVSALKRKGLEALVGDLLKLVPEAEAMFGEDEITDRSQRFLAGEL 179 Query: 211 TREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIMLGKNGQNIKT 269 RE+L L +E+PY++ V E++ E DG++L I VI+VER QK I++GK G +K Sbjct: 180 VREQLMRQLGEELPYATTVEIERFAE--DGALLRIGAVIWVEREGQKAIVIGKGGTRLKE 237 Query: 270 ISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I +A+ ++ + V L +V+V++ W D Sbjct: 238 IGGKARLQMERLFGAKVFLETWVRVREGWSDDEAAL 273 >gi|291059918|gb|ADD72653.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum str. Chicago] Length = 321 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 149/303 (49%), Gaps = 25/303 (8%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + RSG ++G ++GKST +N G KVSIV+ QTTR+ VRGIV+ + QIVF+DTP Sbjct: 9 SPRSGVSLIIGRPSSGKSTFLNAVCGYKVSIVSPIPQTTRNTVRGIVNIESDQIVFMDTP 68 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLIL 135 G + ++ + L S +K AD++ +VD+ R+ + I LL K +R++L Sbjct: 69 GYHRSDRKFNLRLQSLVHSNVKDADVLLYLVDATRQFGEEEAAICALLAPYQK--TRVLL 126 Query: 136 ILNKIDCV-------------KPERLLEQAEIANKL------VFIEKTFMVSATKGHGCD 176 NK+D + + +L + L + ++ F +SA G D Sbjct: 127 AFNKVDVLHNSTSCDEHAFLHRQGSVLRAGSLGRALHAALPHLPADRVFTISALHQVGLD 186 Query: 177 DVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE 236 ++ L LP A +Y D +D + E+ RE+ E+P++ E E Sbjct: 187 ALMRTLRDLLPEAAPLYPQDCYTDQTIAFRVTELIREQAIARCRDELPHALYAGVEDMEL 246 Query: 237 KKDGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 ++ L R + VER SQK +++GK G I+ I L+A + + +L + L + VKV Sbjct: 247 RRGKRELWCRAFLAVERESQKAVLVGKKGAVIRAIRLDAIRALRTLLPYHISLDIRVKVD 306 Query: 296 KDW 298 + W Sbjct: 307 RSW 309 >gi|15639530|ref|NP_218980.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum str. Nichols] gi|189025769|ref|YP_001933541.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum SS14] gi|13959351|sp|O83552|ERA_TREPA RecName: Full=GTPase Era gi|226741402|sp|B2S3D3|ERA_TREPS RecName: Full=GTPase Era gi|3322831|gb|AAC65525.1| GTP-binding protein (era) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018344|gb|ACD70962.1| GTP-binding protein [Treponema pallidum subsp. pallidum SS14] Length = 319 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 149/303 (49%), Gaps = 25/303 (8%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + RSG ++G ++GKST +N G KVSIV+ QTTR+ VRGIV+ + QIVF+DTP Sbjct: 7 SPRSGVSLIIGRPSSGKSTFLNAVCGYKVSIVSPIPQTTRNTVRGIVNIESDQIVFMDTP 66 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLIL 135 G + ++ + L S +K AD++ +VD+ R+ + I LL K +R++L Sbjct: 67 GYHRSDRKFNLRLQSLVHSNVKDADVLLYLVDATRQFGEEEAAICALLAPYQK--TRVLL 124 Query: 136 ILNKIDCV-------------KPERLLEQAEIANKL------VFIEKTFMVSATKGHGCD 176 NK+D + + +L + L + ++ F +SA G D Sbjct: 125 AFNKVDVLHNSTSCDEHAFLHRQGSVLRAGSLGRALHAALPHLPADRVFTISALHQVGLD 184 Query: 177 DVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE 236 ++ L LP A +Y D +D + E+ RE+ E+P++ E E Sbjct: 185 ALMRTLRDLLPEAAPLYPQDCYTDQTIAFRVTELIREQAIARCRDELPHALYAGVEDMEL 244 Query: 237 KKDGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 ++ L R + VER SQK +++GK G I+ I L+A + + +L + L + VKV Sbjct: 245 RRGKRELWCRAFLAVERESQKAVLVGKKGAVIRAIRLDAIRALRTLLPYHISLDIRVKVD 304 Query: 296 KDW 298 + W Sbjct: 305 RSW 307 >gi|311693676|gb|ADP96549.1| GTP-binding protein Era-like protein [marine bacterium HP15] Length = 305 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 157/291 (53%), Gaps = 10/291 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +SR G VA+VG N GKSTL+N +G K+SI + K QTTR V GI + Q +++DTP Sbjct: 11 DSRCGFVAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRHQVLGIKTVGPVQAIYVDTP 70 Query: 79 GIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLIL 135 G+ + + ++ M + + S + +VV +L D +L+++++ +IL Sbjct: 71 GMHEEEPRAINRYMNKAATSALIDV---DVVVFVVDQLAWTTADEMVLEKLSRLKCPVIL 127 Query: 136 ILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D + K E LL ++ +K + +SA K + + + LP + Y Sbjct: 128 AVNKVDKIEKRESLLPHLDMLSKKREFAEIIPLSALKETNLEPLEEAVGRFLPESIHFYP 187 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 DQI+D +EI REK+ L E+PYS V E++ K++G L I +I VER Sbjct: 188 DDQITDRSERFLASEIVREKITRQLGAELPYSVAVEIEEF--KREGKTLHISALILVERE 245 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKKI++G+ G+ ++ I EA+ ++ + + + L L+VKV++ W + Sbjct: 246 GQKKIIIGEKGERMRRIGQEARTDMERMFDSKIMLRLWVKVKRGWADSDRA 296 >gi|28493251|ref|NP_787412.1| GTP-binding protein Era [Tropheryma whipplei str. Twist] gi|28572637|ref|NP_789417.1| GTP-binding protein Era [Tropheryma whipplei TW08/27] gi|81723839|sp|Q83MZ2|ERA_TROWT RecName: Full=GTPase Era gi|81723852|sp|Q83NI3|ERA_TROW8 RecName: Full=GTPase Era gi|28410769|emb|CAD67155.1| GTP-binding protein [Tropheryma whipplei TW08/27] gi|28476292|gb|AAO44381.1| GTP-binding protein Era-like protein [Tropheryma whipplei str. Twist] Length = 301 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 100/290 (34%), Positives = 148/290 (51%), Gaps = 24/290 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG + LVG N GKSTL+N VG +SI + K QTTR I+RG++S +QI DTPGI Sbjct: 11 RSGIITLVGRPNVGKSTLINSLVGEHLSITSDKPQTTRRIIRGVISRMNAQIAITDTPGI 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNK 139 K + K + ++ + +D + + + ++++ +L ++ A + I I+ K Sbjct: 71 HKPKTPFGKGLNEMTTCALSASDSIGICLPVNQKIGSGDRFILDKVEAIGPYKKIAIVTK 130 Query: 140 IDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD---DVLNYLCSTLP-------L 188 ID V K + LL+ +EI++ VSA + D DV C Sbjct: 131 IDRVEKRDLLLKLSEISDLGCNFAAVVPVSAKRAVQIDLLKDVFFENCLNFSEKLFFDHE 190 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P V +DQIS E+ REK L +EIP+S V E+ + + I + Sbjct: 191 KPSV--SDQIS---------ELIREKALCLLEQEIPHSLLVEVEEILTDSN-RVFIHANL 238 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 YVER SQK I+LGK G+ IK IS+ ++ I L + V+L L VKV K+W Sbjct: 239 YVERNSQKMIVLGKGGRTIKNISITSRLAIESFLGKKVYLRLIVKVVKNW 288 >gi|269218580|ref|ZP_06162434.1| GTP-binding protein Era [Actinomyces sp. oral taxon 848 str. F0332] gi|269211691|gb|EEZ78031.1| GTP-binding protein Era [Actinomyces sp. oral taxon 848 str. F0332] Length = 296 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 148/287 (51%), Gaps = 10/287 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G V +VG N GKSTL N VG KV+I + + +TTR +VR +V+ + Q++ +DTPG+ Sbjct: 9 RAGFVCVVGRPNTGKSTLTNALVGQKVAITSDRPETTRRVVRAVVNRESGQLILVDTPGL 68 Query: 81 FNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVN-IHDLLKEIAKRSSRLILI 136 + + M+R S S + A ++CL D + L+ ++ + + ++ Sbjct: 69 HRPRTLLGERLNDMVRDSLSDV-DAIVMCLPADEATGPGDRFLLSLVSKLVSKKASIVAA 127 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + K D V L + + ++L + VSA KG + + + L +P +P +Y D Sbjct: 128 VTKSDLVDRAALARRLQDVSELADFAEVVPVSAAKGDQVELLASLLIERMPESPPLYPRD 187 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D E+ RE L E+P+S V ++ + I ++VER SQK Sbjct: 188 AVTDESEETLITELVREAALRDLRDELPHSLAVTIDEIVGDR-----IHVSLHVERDSQK 242 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 I++G+ G +K I + A+K I +L++ V L L VKV KDW DPK Sbjct: 243 GIVIGRGGAQLKRIRVRARKAIERLLDRKVSLDLHVKVTKDWQRDPK 289 >gi|297539124|ref|YP_003674893.1| GTP-binding protein Era [Methylotenera sp. 301] gi|297258471|gb|ADI30316.1| GTP-binding protein Era [Methylotenera sp. 301] Length = 307 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 159/301 (52%), Gaps = 33/301 (10%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G +A+VG N GKSTL+N +G K++I + K QTTR + GI + +++Q +F+DTPG Sbjct: 19 KCGTIAIVGRPNVGKSTLLNHILGMKLAITSRKAQTTRHRLLGIHTTEDTQFLFVDTPG- 77 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILI 136 F K ++ +K + + + D+V V++ + E + LL + IL+ Sbjct: 78 FQQKHLNTLNKGLNKTVTQVLTEVDVVLFVIEPMKLGEADRKVLALLSD----KPPTILV 133 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFM---------VSATKGHGCDDVLNYLCSTLP 187 +NK D + + N L I+ + VSA K D++L+ + LP Sbjct: 134 VNKSDLM--------GDKGNLLPLIQDFDLEFPFTDIVPVSAKKSLNLDELLHTIRKYLP 185 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 +Y+ D+++D AE+ REK+F + E+PY+ V EK+E + +R++ Sbjct: 186 EQAAIYAEDELTDKNERFLAAELVREKIFRLVGDELPYAVAVEIEKFEVVGN----LRRI 241 Query: 248 ---IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I V++ SQK +++GK+G+ +K IS EA++++ ++ V+L +VKV+ W D + Sbjct: 242 FVAIIVDKDSQKPMLIGKSGEKMKQISTEARQDMEKLFGGKVYLETWVKVKGGWADDERA 301 Query: 305 C 305 Sbjct: 302 L 302 >gi|320169486|gb|EFW46385.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 469 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 141/281 (50%), Gaps = 19/281 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA++GA NAGKS++VN VG VSIV+ + Q+TR + GI + Q+V DTPG+ Sbjct: 195 VAVIGAPNAGKSSIVNSIVGRTVSIVSSRSQSTRERILGIATRANKQMVLFDTPGLLRFN 254 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 F+ + + + S + AD+ +V D + L HDL A+ R IL+LNK Sbjct: 255 FSRRIPIGRELSPESTRALLEADVSMVVYDVSKPLTPADHDLFA--ARNYPREAILVLNK 312 Query: 140 IDCVKPERLLEQA-EIANKLVF--IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +D +L +A EI ++ EK F+ SA+ G DV PW AD Sbjct: 313 VDLAPKADILARAEEIVSRPGAKQFEKVFLTSASAHGGVSDVT--------AGPWEVPAD 364 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 +D E+ R+ +F E+PY T +W + D ++ + Q + V + S Sbjct: 365 YNTDQSRHKIVCEVIRKHIFNMFVAELPYRVTQETTRWHD-SDTTLEVSQKLIVPKASMM 423 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKD 297 KI +G NG+ IK + +++E++ IL V+L L VK KD Sbjct: 424 KIFIGTNGEKIKKLMALSEEELSRILGVQVYLHLEVKSPKD 464 >gi|328948963|ref|YP_004366300.1| GTP-binding protein Era-like-protein [Treponema succinifaciens DSM 2489] gi|328449287|gb|AEB15003.1| GTP-binding protein Era-like-protein [Treponema succinifaciens DSM 2489] Length = 308 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 149/297 (50%), Gaps = 22/297 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++ V++VG +AGKST +N G K+SIV+ QTTR+ +RGI++ Q+VF+DTPG+ Sbjct: 17 KTALVSIVGRPSAGKSTFLNTASGEKISIVSPVPQTTRNAIRGIINTSLGQLVFIDTPGL 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSSRLILIL 137 ++ + + ++ IK +D + ++DS H E + I LL ++++ + Sbjct: 77 HLSEKKLNLKLSNIAQENIKESDAILYIIDSTRPHNEEEEMIASLL---IPHKDKVVIAI 133 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTF---------MVSATKGHGCDDVLNYLCSTLPL 188 NK + K L N FI+KTF +SA + ++VL L S Sbjct: 134 NKTEDSKSNAL-------NSRSFIQKTFPDFPSERIIEISAKEDKNINEVLKALFSLAKE 186 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 P +Y + +D + AEI R + L +E+P++ V + + + + I Sbjct: 187 EPHLYPEEFYTDQEVDFRIAEIIRGQAINRLEQELPHAIYVEISDLKMQTPKLLKVLAYI 246 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 YVER SQK I++GK IKTI +E+ KE +I V + L VKV K+W K Sbjct: 247 YVERESQKGIVIGKGASMIKTIRVESIKECRKIFPYKVDIDLRVKVDKNWRQKDKVL 303 >gi|268679661|ref|YP_003304092.1| GTP-binding protein Era [Sulfurospirillum deleyianum DSM 6946] gi|268617692|gb|ACZ12057.1| GTP-binding protein Era [Sulfurospirillum deleyianum DSM 6946] Length = 296 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 149/286 (52%), Gaps = 8/286 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +++G VA++G NAGKS+L+N +G K+++V+HK TR + I + +QI+F+DTP Sbjct: 4 QTKTGYVAVIGRPNAGKSSLLNWLIGEKLALVSHKANATRKRLNIIAMHENTQIIFIDTP 63 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI + ++ M+ + + D++ + + ++ N D L + K + +++L Sbjct: 64 GIHEQERLLNQFMLEEAMKAMGDCDLILFLAPASDSIQ-NYIDFLA-LNKNHIQHMVLLT 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM---VSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 K D V L ++ I F +K VS KG +L + +P P++Y Sbjct: 122 KTDSVSQTALFDK--IKEYQAFQDKFLALIPVSIKKGISQSYLLETISKQMPEHPYLYDP 179 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 + ++ + E+ RE +F + EIPY S V+ +K EEK+ + +I V++ SQ Sbjct: 180 EILTTERLRDIYKELIREAIFENTSDEIPYFSDVIIDKVEEKETIENIYATII-VDKKSQ 238 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K I++GK GQ IK I A+K I + ++ L L V V++ W D Sbjct: 239 KGILIGKEGQTIKRIGSHARKLIESLSQKRAFLKLVVVVKQGWSQD 284 >gi|156548266|ref|XP_001601275.1| PREDICTED: similar to GTP-binding protein era [Nasonia vitripennis] Length = 346 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 161/311 (51%), Gaps = 32/311 (10%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F N+ + + N +S +A++G NAGKSTL+N +G V + K+ TTR I Sbjct: 38 FLNDQDN--KKNVKSLKIAILGLPNAGKSTLINHLIGRPVCATSSKIHTTRKKASAIFCL 95 Query: 68 KESQIVFLDTPGI--------FNAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRE 114 ++Q+VF+DTPG+ + +DS+ K + ++K AD++ ++ D + + Sbjct: 96 DDTQLVFIDTPGLVGRGDVKKYKLEDSFKKDV----QHSMKEADVIGVLQDMTNLHARKF 151 Query: 115 LKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIE------KTFMVS 168 + I +L E++K + ILILNKID +K ++LL E+ L E FM+S Sbjct: 152 IDKKIMSIL-ELSKAETNSILILNKIDTLKHKKLL--LEVVQNLTSQEAGPKFSDVFMIS 208 Query: 169 ATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSC 228 A G G DD+ NY + W Y+ SD EI + K L +E+PY Sbjct: 209 ALTGDGVDDLRNYFLDSAKERTWEYNKKTYSDQTPDTIVQEIVKAKFLDDLPQELPYLVD 268 Query: 229 VVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQNIKTISLEAKKEIAEILEQPV 286 VV E E+ +DGS+ + V+ V PS + ++++G++G+ +K ++ EA++ + V Sbjct: 269 VVAEHVEKCEDGSMNV--VVNVNCPSARIARMIIGRSGERVKKVAKEAEQVLCTTFTTAV 326 Query: 287 HLILFVKVQKD 297 L + + ++++ Sbjct: 327 RLKIAIPIKEE 337 >gi|153823698|ref|ZP_01976365.1| GTP-binding protein Era [Vibrio cholerae B33] gi|126518786|gb|EAZ76009.1| GTP-binding protein Era [Vibrio cholerae B33] Length = 282 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 139/252 (55%), Gaps = 6/252 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N G VA+VG N GKSTL+N +G K+SI + K QTTR + G+ ++ Q +++DT Sbjct: 27 ENQHCGFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDT 86 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM R + S++ ++V VV+ + + ++ K + ++L Sbjct: 87 PGLHIEEKRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFTKLQKANFPVVLC 145 Query: 137 LNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 +NK+D VK E +L E++ ++ F++ +SA +G D + ++ LP A + Sbjct: 146 VNKVDQVKDRNEVMLHMLELSKRMQFVD-IVPISAKQGKNTDVLKKHVRDHLPKAVHHFP 204 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIYVERP 253 + ++D +EI REKL +E+PYS V E+++ D I +I VER Sbjct: 205 EEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALILVERI 264 Query: 254 SQKKIMLGKNGQ 265 QKK+++GKNG+ Sbjct: 265 GQKKMVIGKNGE 276 >gi|225075385|ref|ZP_03718584.1| hypothetical protein NEIFLAOT_00390 [Neisseria flavescens NRL30031/H210] gi|224953203|gb|EEG34412.1| hypothetical protein NEIFLAOT_00390 [Neisseria flavescens NRL30031/H210] Length = 309 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 101/301 (33%), Positives = 163/301 (54%), Gaps = 20/301 (6%) Query: 15 FVQDNS------RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F+Q+ S R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ Sbjct: 6 FLQNESQHPTDYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDD 65 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEI 126 +Q VF+DTPG + + L RL+ + + V +VV ++ D +LK++ Sbjct: 66 TAQFVFVDTPGF--QTNHRNALNDRLNQNVTEALSGVDVVVFVVEAMRFTDADRVVLKQL 123 Query: 127 AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLN 180 K + ++L++NKID K + N+ + + F VSA G ++L Sbjct: 124 PKHTP-VVLVVNKIDKDKAKDKFALEAFINE---VRQEFEFTASEAVSAKHGLRIANLLE 179 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 L LP + +Y D ++D EI REKLF +L +E+PY+ V E++EE++ G Sbjct: 180 LLKPYLPESIPMYPEDMVTDKSSRFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEESG 239 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I + V++ SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W Sbjct: 240 LFRIYIAVLVDKDSQKAILIGKGGEKLKKISTEARLDMEKLFDTKVFLKIWVKVKSGWAD 299 Query: 301 D 301 D Sbjct: 300 D 300 >gi|120555159|ref|YP_959510.1| GTP-binding protein Era [Marinobacter aquaeolei VT8] gi|189037652|sp|A1U2V4|ERA_MARAV RecName: Full=GTPase Era gi|120325008|gb|ABM19323.1| GTP-binding protein Era [Marinobacter aquaeolei VT8] Length = 305 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 152/288 (52%), Gaps = 16/288 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR G VA+VG N GKSTL+N +G K+SI + K QTTR V GI +E Q +++DTPG Sbjct: 12 SRCGFVAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRHQVLGIKTEGPVQAIYVDTPG 71 Query: 80 IF-NAKDSYHKLMIRLSWSTI-----KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 + + + ++ M + + S + + L S E+ +L+++ + + Sbjct: 72 MHEDEPRALNRYMNKAAASALIDVDVVVFVVDQLAWTSADEM------VLEKLKRVKCPV 125 Query: 134 ILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 IL +NK+D + K E LL E +K + +SA K + + + + LP + Sbjct: 126 ILAVNKVDKLEKRELLLPHLEALSKKRDFAEIIPLSALKETNLEPLESAVGRFLPESVHF 185 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 Y DQI+D AE+ REK+ L E+PYS V E++ K G+ L + +I VE Sbjct: 186 YPDDQITDRSERFMAAEMVREKITRQLGAELPYSVAVEIEEF--KHQGNTLHVSALILVE 243 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 R QKKI++G G+ +++I EA+ ++ + V L L+VKV++ W Sbjct: 244 REGQKKIIIGDKGERLRSIGQEARVDMERMFGSKVMLRLWVKVKRGWA 291 >gi|42523420|ref|NP_968800.1| GTP-binding protein Era [Bdellovibrio bacteriovorus HD100] gi|39575626|emb|CAE79793.1| GTP-binding protein Era [Bdellovibrio bacteriovorus HD100] Length = 303 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 10/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++G + L+G NAGKSTL+N V KVSIV+ K QTTR + GI S ++ Q++F+D PG+ Sbjct: 4 KAGFLGLIGQPNAGKSTLMNFLVDEKVSIVSSKPQTTRRRILGIWSTEKGQVIFVDAPGL 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A + + + + + I +D + ++ E N ++ ++K I ++ K Sbjct: 64 IKADEGLNGFLAQEAHDVINSSDALLAIIAVDEEKPENAEKVIDLVSKSGKPWIAVITKT 123 Query: 141 DCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDD----VLNYLCSTLPLAPW-VY 193 D E + I K+V + K F VS + +L LP +P +Y Sbjct: 124 DI---EEKAHRVMILRKMVEDKGGKAFSVSVKDSKNDQEEREALLIEFMELLPESPAPLY 180 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++ + AEI RE+ F LH EIPYS V K+EE I I V + Sbjct: 181 DTELFTNENVREMAAEIVREQCFEALHHEIPYSIAVRIVKFEEDAKPVPKIYAEIVVSKD 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++GK IK I +EA+KEI +++ + + L L V + +W Sbjct: 241 SHKAIVIGKGASVIKQIGMEARKEIEKLMGEKIFLDLNVASKPEW 285 >gi|241758547|ref|ZP_04756664.1| GTP-binding protein Era [Neisseria flavescens SK114] gi|241321290|gb|EER57450.1| GTP-binding protein Era [Neisseria flavescens SK114] Length = 309 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 20/301 (6%) Query: 15 FVQDNS------RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F+Q+ S R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ Sbjct: 6 FLQNESQHPTDYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDD 65 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEI 126 +Q VF+DTPG + + L RL+ + + V +VV ++ D +LK++ Sbjct: 66 TAQFVFVDTPGF--QTNHRNALNDRLNQNVTEALSGVDVVVFVVEAMRFTDADRVVLKQL 123 Query: 127 AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLN 180 K + ++L++NKID K + N+ + + F VSA G ++L Sbjct: 124 PKHTP-VVLVVNKIDKDKAKDKFALEAFINE---VRQEFEFTASEAVSAKHGLRIANLLE 179 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 L LP +Y D ++D EI REKLF +L +E+PY+ V E++EE++ G Sbjct: 180 LLKPYLPENIPMYPEDMVTDKSSRFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEESG 239 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I + V++ SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W Sbjct: 240 LFRIYIAVLVDKDSQKAILIGKGGEKLKKISTEARLDMEKLFDTKVFLKIWVKVKSGWAD 299 Query: 301 D 301 D Sbjct: 300 D 300 >gi|183601567|ref|ZP_02962937.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis HN019] gi|219683898|ref|YP_002470281.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis AD011] gi|241190934|ref|YP_002968328.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196340|ref|YP_002969895.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219173|gb|EDT89814.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis HN019] gi|219621548|gb|ACL29705.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis AD011] gi|240249326|gb|ACS46266.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250894|gb|ACS47833.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793923|gb|ADG33458.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis V9] Length = 331 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 34/311 (10%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RG+++ +QIV +DTPGI Sbjct: 20 RSGFVAVVGRPNVGKSTLINALIGMQIAIASSRPETTRKAIRGVLTTDNAQIVLVDTPGI 79 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-------- 132 + + + + ++ +D + ++ + +E+ +L + + + Sbjct: 80 HRPRTLLGQRLNDVVDESLADSDEIAFLLPADQEIGPGDRRILSRLRSQFATKNDDGTFK 139 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEK------TFMVSATKGHGCDDVLNYL 182 LI I+ KID L + E+ NKL+ I + VSA +V L Sbjct: 140 WKVPLIAIVTKIDR------LNRTELVNKLIEINEFADFADIVPVSALGDDNLQEVRTVL 193 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--------- 233 LP P +Y DQ+++ AE+ R L L E+P+S VV + Sbjct: 194 IEHLPEGPQMYPTDQVTEERPEDAIAELVRGVLLEELDDELPHSLAVVVDSIDMPEDMDE 253 Query: 234 -WEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFV 292 + G + IYVER SQK I++G++ +++ I + + ++ + +L L V Sbjct: 254 DDAQAMHGKARVMVSIYVERDSQKPIIIGRHAEHLVRIKKRLRTPVNRLVGRKANLDLHV 313 Query: 293 KVQKDWGHDPK 303 KV K+W DPK Sbjct: 314 KVAKNWQSDPK 324 >gi|289178676|gb|ADC85922.1| GTP-binding protein era [Bifidobacterium animalis subsp. lactis BB-12] Length = 363 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 34/311 (10%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG VA+VG N GKSTL+N +G +++I + + +TTR +RG+++ +QIV +DTPGI Sbjct: 52 RSGFVAVVGRPNVGKSTLINALIGMQIAIASSRPETTRKAIRGVLTTDNAQIVLVDTPGI 111 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-------- 132 + + + + ++ +D + ++ + +E+ +L + + + Sbjct: 112 HRPRTLLGQRLNDVVDESLADSDEIAFLLPADQEIGPGDRRILSRLRSQFATKNDDGTFK 171 Query: 133 ----LILILNKIDCVKPERLLEQAEIANKLVFIEK------TFMVSATKGHGCDDVLNYL 182 LI I+ KID L + E+ NKL+ I + VSA +V L Sbjct: 172 WKVPLIAIVTKIDR------LNRTELVNKLIEINEFADFADIVPVSALGDDNLQEVRTVL 225 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK--------- 233 LP P +Y DQ+++ AE+ R L L E+P+S VV + Sbjct: 226 IEHLPEGPQMYPTDQVTEERPEDAIAELVRGVLLEELDDELPHSLAVVVDSIDMPEDMDE 285 Query: 234 -WEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFV 292 + G + IYVER SQK I++G++ +++ I + + ++ + +L L V Sbjct: 286 DDAQAMHGKARVMVSIYVERDSQKPIIIGRHAEHLVRIKKRLRTPVNRLVGRKANLDLHV 345 Query: 293 KVQKDWGHDPK 303 KV K+W DPK Sbjct: 346 KVAKNWQSDPK 356 >gi|167041994|gb|ABZ06731.1| putative GTPase of unknown function [uncultured marine microorganism HF4000_141E02] Length = 332 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 157/286 (54%), Gaps = 7/286 (2%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 +DN RSG VA++G N GKSTLVN VG KVSIVT K QTT+ + GIV +QI+ Sbjct: 46 MTKDNYRSGYVAVIGRPNVGKSTLVNALVGEKVSIVTSKPQTTQINILGIVHLPHAQIML 105 Query: 75 LDTPGIFNAKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DTPG+ + + K + + + + AD+ +VV+ +R K + + L++ + + + Sbjct: 106 VDTPGLLSGRGKRLSSKQTRKETRNALAMADLAVVVVEVNRWKKEDDY-LMERLGEFNFE 164 Query: 133 LILILNKIDCVKPE-RLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 IL +NKID K + ++L+ A+ + K F E +SA + + + + + LP Sbjct: 165 KILAVNKIDLFKDKSQILDFLAQSSTKGSFKE-IVPISALRDKNITRLRSLMEANLPFQT 223 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 +S ++D +EI REKL L E+PYS + EEK + ++ ++ Sbjct: 224 PQFSKTTVTDQSTVFRISEIVREKLMKCLRDELPYSLTCEVDHMEEKNNLILIELSILLF 283 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 + S KKI++GKNG+ +K + E+++EI ++L + V L VK + Sbjct: 284 -KESHKKIVIGKNGRILKRVGTESRREIEKLLGKKVFLSSVVKTNQ 328 >gi|323453654|gb|EGB09525.1| hypothetical protein AURANDRAFT_71340 [Aureococcus anophagefferens] Length = 1193 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 96/311 (30%), Positives = 145/311 (46%), Gaps = 30/311 (9%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G V +VG+ N GKSTL N +G + I K QTTR + G+ + Q+V DTPGI Sbjct: 869 RAGFVGVVGSPNVGKSTLTNALLGQDLCITNSKAQTTRHRILGVANGDGYQLVLSDTPGI 928 Query: 81 F-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR------- 132 + + M+ + + + A+ V V D + +V A+ +SR Sbjct: 929 LCDPAYALQSTMMTAAKAAARDAECVLFVTDVFEDPEVVAESAAWLDAQLASRAGDEPKP 988 Query: 133 -LILILNKIDC--VKPERLLEQAEIANKLV---------------FIEKTFMVSATKGHG 174 +++ LNK+D V + E A++ V +SA G G Sbjct: 989 PVVVALNKVDLLGVDDDGYPLLGEAASRRVGSLDDAVARARAAVPGAAAVVPLSAATGAG 1048 Query: 175 CDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW 234 D++ L S LP + ++ + +D P F AEI REK+ KEIPYS V +++ Sbjct: 1049 VDELARALASELPESAALFDDEYFTDRPSRFFAAEIIREKILAQFAKEIPYSCEVRIDRF 1108 Query: 235 EE----KKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLIL 290 +E K + I + V R SQK I++GK G IK I + A++ + + VHL L Sbjct: 1109 KEDLELKGRPFVNIDAAVLVARDSQKGILVGKRGAAIKAIGVAAREHLETFFDAKVHLAL 1168 Query: 291 FVKVQKDWGHD 301 VKV KDW D Sbjct: 1169 RVKVSKDWRAD 1179 >gi|308235186|ref|ZP_07665923.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14018] gi|311114841|ref|YP_003986062.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14019] gi|310946335|gb|ADP39039.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14019] Length = 354 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 146/319 (45%), Gaps = 28/319 (8%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E+ FN +K SG VA+VG N GKSTL+N +G +++I + + +TTR +RGI Sbjct: 37 EVPDFNGYK--------SGFVAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGI 88 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IH 120 ++ +Q+V +DTPGI + + + + ++ D + ++ + +E+ + Sbjct: 89 LTTPNAQMVLVDTPGIHRPRTLLGQRLNDIVDESLADVDAIAFLLPADQEIGPGDRRILS 148 Query: 121 DLLKEIAKRSSR--------LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 L + AK+ + LI I+ KID + + L+ + VSA + Sbjct: 149 RLRSDFAKKDASGNWVWKVPLIGIVTKIDTLSRDELVSHLIEIQQFADFTDIVPVSALER 208 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE 232 D+V L LP P +Y DQ+S+ AE+ R L E+P+S VV + Sbjct: 209 DNVDEVKKVLIDNLPEGPKMYPDDQLSEESPSSMIAELIRGAFLEELDDELPHSLAVVVD 268 Query: 233 KWEEKKDGSIL--------IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 DG + +YVER SQK I++G+ +++ + + + I Sbjct: 269 SIVRPGDGDYTQYSDNKAHVIVSVYVERDSQKPIIIGRGAEHLVRVKKRLRTAVNRITGA 328 Query: 285 PVHLILFVKVQKDWGHDPK 303 L L VKV K W DPK Sbjct: 329 KAVLDLHVKVAKGWQSDPK 347 >gi|319639175|ref|ZP_07993926.1| GTP-binding protein era [Neisseria mucosa C102] gi|317399359|gb|EFV80029.1| GTP-binding protein era [Neisseria mucosa C102] Length = 309 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/301 (33%), Positives = 162/301 (53%), Gaps = 20/301 (6%) Query: 15 FVQDNS------RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F+Q+ S R G VA+VG N GKSTL+N +G K+SI + K QTTR+ V GI ++ Sbjct: 6 FLQNESQHPTDYRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDD 65 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEI 126 +Q VF+DTPG + + L RL+ + + V +VV ++ D +LK++ Sbjct: 66 TAQFVFVDTPGF--QTNHRNALNDRLNQNVTEALSGVDVVVFVVEAMRFTDADRVVLKQL 123 Query: 127 AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLN 180 K + ++L++NKID K + N+ + + F VSA G ++L Sbjct: 124 PKHTP-VVLVVNKIDKDKAKDKFALEAFINE---VRQEFEFAASEAVSAKHGLRIANLLE 179 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 L LP + +Y D ++D EI REKLF +L +E+PY+ V E++EE++ G Sbjct: 180 LLKPYLPESIPMYPEDMVTDKSSRFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEESG 239 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 I + ++ SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W Sbjct: 240 LFRIYIAVLADKDSQKAILIGKGGEKLKKISTEARLDMEKLFDTKVFLKIWVKVKSGWAD 299 Query: 301 D 301 D Sbjct: 300 D 300 >gi|183508428|ref|ZP_02957974.1| GTP-binding protein Era [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675835|gb|EDT87740.1| GTP-binding protein Era [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 300 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 156/290 (53%), Gaps = 21/290 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G VA+VG N GKSTL+N + KVSI+++K QTTR+ V+ I + ES I+F DTPG Sbjct: 4 KYGIVAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGF 63 Query: 81 F---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLI 134 N D + I +S+ K A+I+ V +EL N I +L+KE K + +I Sbjct: 64 HEPSNKLDLFLNHEIEISY---KEANIILFVTTMDKELDANDFEIINLIKEANKEN--VI 118 Query: 135 LILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL----NYLCSTLPLA 189 L+++K + K +++ E+ K + + +SA D ++ NYL + Sbjct: 119 LVISKAEMAKNQDQIDERIHFLKKHLVFKDVVQISALHAINIDKLISTIKNYLHKDVVTD 178 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVI 248 + A++ + EI RE+ L+L+ E+P+ V + E ++ +I+ I Sbjct: 179 YFRQKAEKEDKFVI----TEIIREQCLLNLNHEVPHGVGVEIDESKYNQEANHWIIKASI 234 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +E+ S K I++G+NG IK IS+ A+K++ EI + + L +FVKV+ +W Sbjct: 235 IIEKNSHKPIIIGQNGTMIKKISMGARKQLHEIYDCHISLTIFVKVENNW 284 >gi|51854284|gb|AAU10665.1| putative GTP-binding protein [Oryza sativa Japonica Group] gi|215767306|dbj|BAG99534.1| unnamed protein product [Oryza sativa Japonica Group] Length = 236 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 125/220 (56%), Gaps = 7/220 (3%) Query: 88 HKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 HKL M++ S + AD V +VVD+ + + I ++L+E + + + L +L+LNK D Sbjct: 2 HKLDTMMMKNVRSAVGSADCVLVVVDACK-MPEKIDEILEEGVGNKDTELPVLLVLNKKD 60 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 +KP + ++ E K + +SA GHG DD+ ++ S LPL P Y D S+ Sbjct: 61 LIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGPAYYPKDIASEH 120 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P F EI REK+FL +EIPY+ V ++ + I+ I VE+ SQ+ I+LG Sbjct: 121 PERFFVGEIVREKIFLQYRQEIPYACQVNVISYKSRPTAKDFIQVEILVEKESQRSIILG 180 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 K+G+ IK ++ ++ +I + L++ V+L + VKV+++W D Sbjct: 181 KDGKAIKMLATASRLDIEDFLQKKVYLEIMVKVKENWRQD 220 >gi|167041437|gb|ABZ06189.1| putative GTPase of unknown function [uncultured marine microorganism HF4000_006O13] Length = 332 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 157/286 (54%), Gaps = 7/286 (2%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 +DN RSG VA++G N GKSTLVN VG KVSIVT K QTT+ + GIV +QI+ Sbjct: 46 MTKDNYRSGYVAVIGRPNVGKSTLVNALVGEKVSIVTSKPQTTQINILGIVHLPHAQIML 105 Query: 75 LDTPGIFNAKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DTPG+ + + K + + + + AD+ +VV+ +R K + + L++ + + + Sbjct: 106 VDTPGLLSGRGKRLSSKQTRKETRNALAMADLAVVVVEVNRWKKEDDY-LMERLGEFNFE 164 Query: 133 LILILNKIDCVKPE-RLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 IL +NKID K + ++L+ A+ + K F E +SA + + + + + LP Sbjct: 165 KILAVNKIDLFKDKSQILDFLAQSSTKGSFKE-IVPISALRDKNITRLRSLMEANLPFQT 223 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 +S ++D +EI REKL L E+PYS + EEK + ++ ++ Sbjct: 224 PQFSKTTVTDKSTVFRISEIVREKLMKCLRDELPYSLTCEVDHMEEKNNLILIELSILLF 283 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 + S KKI++GKNG+ +K + E+++EI ++L + V L VK + Sbjct: 284 -KESHKKIVIGKNGRIMKRVGTESRREIEKLLGKKVFLSSVVKTNQ 328 >gi|332256166|ref|XP_003277188.1| PREDICTED: GTPase Era, mitochondrial [Nomascus leucogenys] Length = 437 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 102/335 (30%), Positives = 160/335 (47%), Gaps = 50/335 (14%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HHPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQ 162 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 ++ LDTPGI + K H L + L W +++ AD+V ++VD + N LL+ Sbjct: 163 VILLDTPGIISPGKQKRHHLELSLLEDPWKSVESADLVVVLVDVSDKWTRNQLSPQLLRC 222 Query: 126 IAKRSS-RLILILNKIDCVKPERLLEQ--AEIANKLV----------------------- 159 + K S +L++NK+DC+K + +L + A + +V Sbjct: 223 LTKFSQIPSVLVMNKVDCLKQKSVLLELTAALTEGVVNGKKLNMRQAFHSHPGTHCPSPA 282 Query: 160 ------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 ++ FM+SA + YL + PW Y + ++ Sbjct: 283 VKDPDTQSVGNPQRTGWPHFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQ 342 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 A I REKL HL +E+PY+ T WEE G +LI+Q + V + S K+++G Sbjct: 343 TPEEICANIIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELLIQQKLLVPKESYMKLLIG 402 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 G I I+ EA +++ +I V + L VK+ K Sbjct: 403 PKGHVISQIAQEAGRDLMDIFLCDVDIHLSVKLLK 437 >gi|171920300|ref|ZP_02931650.1| GTP-binding protein Era [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902714|gb|EDT49003.1| GTP-binding protein Era [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 300 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 156/290 (53%), Gaps = 21/290 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G VA+VG N GKSTL+N + KVSI+++K QTTR+ V+ I + ES I+F DTPG Sbjct: 4 KYGIVAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGF 63 Query: 81 F---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLI 134 N D + I +S+ K A+++ V +EL N I +L+KE K + +I Sbjct: 64 HEPSNKLDLFLNHEIEISY---KEANVILFVTTMDKELDANDFEIINLIKEANKEN--II 118 Query: 135 LILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL----NYLCSTLPLA 189 L+++K + K +++ E+ K + + +SA D ++ NYL + Sbjct: 119 LVISKAEMAKNQDQIDERIHFLKKHLVFKDVVQISALHAINIDKLISTIKNYLHKDVVTD 178 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVI 248 + A++ + EI RE+ L+L+ E+P+ V + E ++ +I+ I Sbjct: 179 YFRQKAEKEDKFVI----TEIIREQCLLNLNHEVPHGVGVEIDESKYNQEANHWIIKASI 234 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 +E+ S K I++G+NG IK IS+ A+K++ EI + + L +FVKV+ +W Sbjct: 235 IIEKNSHKPIIIGQNGTMIKKISMGARKQLHEIYDCHISLTIFVKVENNW 284 >gi|73967240|ref|XP_537749.2| PREDICTED: similar to Era G-protein-like 1 [Canis familiaris] Length = 559 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 161/335 (48%), Gaps = 54/335 (16%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H+ + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++E+E+Q Sbjct: 225 HRPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEEEAQ 284 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPG+ + AK H L + L W +++ AD+V ++VD + +L + Sbjct: 285 VILLDTPGLISPAKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQVLQC 344 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLVFIEK----------------- 163 L + ++ S IL++NK+DC+K + +L + A + +V +K Sbjct: 345 LTQFSQVPS--ILVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQALHLQSDTPRPS 402 Query: 164 ------------------------TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 FM+SA + YL + PW Y + ++ Sbjct: 403 PTAKGPNIQSMGGPQRIGWPHFREIFMLSALSQEDVKTLKQYLLAQALPGPWEYHSGVLT 462 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 A I REKL HL +E+PYS T WEE G ++I Q + V + S +I+ Sbjct: 463 SQTPEEICANIIREKLLEHLPQEMPYSVQQKTVLWEEGPSGELVIEQKLLVSKESHVRIL 522 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 +G G+ I I+ EA ++ +I V L L VK+ Sbjct: 523 IGPKGRLIAQIAQEAGHDLMDIFLCDVQLRLSVKL 557 >gi|170762293|ref|YP_001752575.1| GTP-binding protein Era [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|186701592|ref|ZP_02553723.2| GTP-binding protein Era [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|13959363|sp|Q9PPZ9|ERA_UREPA RecName: Full=GTPase Era gi|189037684|sp|B1AJD1|ERA_UREP2 RecName: Full=GTPase Era gi|168827870|gb|ACA33132.1| GTP-binding protein Era [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|186700821|gb|EDU19103.1| GTP-binding protein Era [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 300 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 154/286 (53%), Gaps = 13/286 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G VA+VG N GKSTL+N + KVSI+++K QTTR+ V+ I + ES I+F DTPG Sbjct: 4 KYGIVAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGF 63 Query: 81 F---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLI 134 N D + I +S+ K A+++ V +EL N I +L+KE K + +I Sbjct: 64 HEPSNKLDLFLNHEIEISY---KEANVILFVTTMDKELDANDFEIINLIKEANKEN--II 118 Query: 135 LILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L+++K + K +++ E+ K + + +SA D ++N + + L Sbjct: 119 LVISKAEMAKNQDQIDERIHFLKKHIAFKDVVQISALHVINIDKLINTIKNYLHKDVVTD 178 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVIYVER 252 Q ++ EI RE+ L+L+ E+P+ V + E ++ +I+ I +E+ Sbjct: 179 YFRQKAEKEDKFVITEIIREQCLLNLNHEVPHGVGVEIDESKYNQEANHWIIKASIIIEK 238 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++G+NG IK IS+ A+K++ EI + + L +FVKV+ +W Sbjct: 239 NSHKPIIIGQNGTMIKKISMGARKQLHEIYDCHISLTIFVKVENNW 284 >gi|13358054|ref|NP_078328.1| GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|6899489|gb|AAF30903.1|AE002147_4 GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 304 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 154/286 (53%), Gaps = 13/286 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G VA+VG N GKSTL+N + KVSI+++K QTTR+ V+ I + ES I+F DTPG Sbjct: 8 KYGIVAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGF 67 Query: 81 F---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLI 134 N D + I +S+ K A+++ V +EL N I +L+KE K + +I Sbjct: 68 HEPSNKLDLFLNHEIEISY---KEANVILFVTTMDKELDANDFEIINLIKEANKEN--II 122 Query: 135 LILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L+++K + K +++ E+ K + + +SA D ++N + + L Sbjct: 123 LVISKAEMAKNQDQIDERIHFLKKHIAFKDVVQISALHVINIDKLINTIKNYLHKDVVTD 182 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVIYVER 252 Q ++ EI RE+ L+L+ E+P+ V + E ++ +I+ I +E+ Sbjct: 183 YFRQKAEKEDKFVITEIIREQCLLNLNHEVPHGVGVEIDESKYNQEANHWIIKASIIIEK 242 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 S K I++G+NG IK IS+ A+K++ EI + + L +FVKV+ +W Sbjct: 243 NSHKPIIIGQNGTMIKKISMGARKQLHEIYDCHISLTIFVKVENNW 288 >gi|294460854|gb|ADE76000.1| unknown [Picea sitchensis] Length = 324 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/197 (39%), Positives = 110/197 (55%), Gaps = 9/197 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V + RSG VA+VG N GKSTL+N+ +G K+SIVT K QTTR + G+ S + Q+V Sbjct: 129 VGPDHRSGYVAVVGKPNVGKSTLLNQMIGQKLSIVTDKPQTTRHRILGLCSAPDYQMVLY 188 Query: 76 DTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KR 129 DTPG+ + HKL M++ S +AD V VVD R + ++DL +E K+ Sbjct: 189 DTPGVIQKE--MHKLDAMMMKNVHSATGNADCVLTVVDVCR-VPEKVNDLFEEDGVDLKK 245 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +L+LNK D +KP + ++ E K + +SA GHG +DV N++ S LP Sbjct: 246 KPPTLLVLNKKDLMKPGEIAKRMEWYEKFGGADHILSISAKYGHGVEDVKNWIVSKLPYG 305 Query: 190 PWVYSADQISDLPMFHF 206 P YS D IS+ P F Sbjct: 306 PAYYSKDIISEHPERFF 322 >gi|332848215|ref|XP_511365.3| PREDICTED: GTPase Era, mitochondrial [Pan troglodytes] Length = 437 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 102/335 (30%), Positives = 161/335 (48%), Gaps = 50/335 (14%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +NSR V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HHPDMPENSRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQ 162 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 ++ LDTPGI + K H L + L W +++ AD+V ++VD + N LL+ Sbjct: 163 VILLDTPGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRC 222 Query: 126 IAKRSS-RLILILNKIDCVKPERLLEQ--AEIANKLV----------------------- 159 + K S +L++NK+DC+K + +L + A + +V Sbjct: 223 LTKFSQIPSVLVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPA 282 Query: 160 ------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 ++ FM+SA + YL + PW Y + ++ Sbjct: 283 VKDPNTQSVGNPQRIGWPHFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQ 342 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 A I REKL HL +E+PY+ T WEE G ++I+Q + V + S K+++G Sbjct: 343 TPEEICANIIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIG 402 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 G I I+ EA +++ +I V + L VK+ K Sbjct: 403 PKGHLISQIAQEAGRDLMDIFLCDVDIRLSVKLLK 437 >gi|14211570|dbj|BAB56112.1| conserved ERA-like GTPase [Homo sapiens] Length = 437 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 102/335 (30%), Positives = 161/335 (48%), Gaps = 50/335 (14%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +NSR V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HHPDMPENSRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQ 162 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 ++ LDTPGI + K H L + L +W +++ AD+V ++VD + N LL+ Sbjct: 163 VILLDTPGIISPGKQKRHHLELSLLEDTWKSMESADLVVVLVDVSDKWTRNQLSPQLLRC 222 Query: 126 IAKRSS-RLILILNKIDCVKPERLLEQ--AEIANKLV----------------------- 159 + K S +L++NK+DC+K + +L + A + +V Sbjct: 223 LTKYSQIPSVLVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPA 282 Query: 160 ------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 ++ FM+SA + YL + PW Y + ++ Sbjct: 283 VKDPNTQSVGNPQRIGWPHFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQ 342 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 A I REKL HL +E+PY+ T WEE G ++I+Q + V + S K+++G Sbjct: 343 TPEEICANIIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIG 402 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 G I I+ EA ++ +I V + L VK+ K Sbjct: 403 PKGHVISQIAQEAGHDLMDIFLCDVDIRLSVKLLK 437 >gi|323359833|ref|YP_004226229.1| GTPase [Microbacterium testaceum StLB037] gi|323276204|dbj|BAJ76349.1| GTPase [Microbacterium testaceum StLB037] Length = 297 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 142/290 (48%), Gaps = 7/290 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++RSG V VG N GKSTL N VG KV+I + K QTTR +RGIV+ Q+V +DTP Sbjct: 3 DTRSGFVTFVGRPNVGKSTLTNALVGEKVAITSDKPQTTRRAIRGIVNRPGGQLVVVDTP 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLILI 136 GI + + + L + D++ + ++ + + ++ R+ ++ L+ Sbjct: 63 GIHRPRTLLGQRLNDLVEQVLGDVDVIAFCAPATEKVGPGDRRIAESLSGYPRAKKVALV 122 Query: 137 LNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 K D +++ E+ E+ + +SA D + + L + +P P +Y A Sbjct: 123 -TKTDAATRDQITERLVEVDSLREDWAAVIPLSAVTNDQLDVLSDELLALMPEGPALYDA 181 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL--IRQVIYVERP 253 D +D + AEI RE + E+P+S V + +DGS L + I VER Sbjct: 182 DITTDETLEDRIAEIIREAALHGVRDELPHSIAVTIDDV-APRDGSDLTDVWANIIVERD 240 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++G+ G + + A+ I ++ V+L L V+V K+W D K Sbjct: 241 SQKAIIIGRKGSRLADVGARARAGIEPLVGGRVYLSLHVRVAKEWQRDAK 290 >gi|301753046|ref|XP_002912360.1| PREDICTED: GTP-binding protein era homolog [Ailuropoda melanoleuca] gi|322518595|sp|D2GU20|ERAL1_AILME RecName: Full=GTPase Era, mitochondrial; AltName: Full=ERA-like protein 1; Flags: Precursor gi|281350537|gb|EFB26121.1| hypothetical protein PANDA_000103 [Ailuropoda melanoleuca] Length = 437 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 98/335 (29%), Positives = 159/335 (47%), Gaps = 54/335 (16%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H+ + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HRPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKEAQ 162 Query: 72 IVFLDTPGIFNA-KDSYHKLMIRL---SWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPG+ + K H L + L W +++ AD+V ++VD + +L + Sbjct: 163 VILLDTPGLISPVKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQVLQC 222 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLV--------------------- 159 L + ++ S IL++NK+DC+K + +L + A + +V Sbjct: 223 LTQFSQVPS--ILVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQALRSQPGTPCPS 280 Query: 160 --------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ++ FM+SA + YL + PW + + ++ Sbjct: 281 PAVKGPNTQSVGGPQRIGWPHFQEIFMLSALSQEDVKTLKQYLLAQARPGPWEFHSGVLT 340 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 A I REKL HL +E+PYS T WEE G ++I Q + V + S +I+ Sbjct: 341 SQTPEEICANIIREKLLEHLPQEMPYSVQQRTVMWEEGPSGELVIEQKLLVPKKSHVRIL 400 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 +G G I I+ E +++ +I V L L VK+ Sbjct: 401 IGPKGHLISQIAQEVSRDLMDIFLCDVRLRLSVKL 435 >gi|15418716|gb|AAG12978.1| ERA-W [Homo sapiens] Length = 444 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 102/335 (30%), Positives = 160/335 (47%), Gaps = 50/335 (14%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +NSR V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 110 HHPDMPENSRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQ 169 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 ++ LDTPGI + K H L + L W +++ AD+V ++VD + N LL+ Sbjct: 170 VILLDTPGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRC 229 Query: 126 IAKRSS-RLILILNKIDCVKPERLLEQ--AEIANKLV----------------------- 159 + K S +L++NK+DC+K + +L + A + +V Sbjct: 230 LTKYSQIPSVLVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPA 289 Query: 160 ------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 ++ FM+SA + YL + PW Y + ++ Sbjct: 290 VKDPNTQSVGNPQRIGWPHFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQ 349 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 A I REKL HL +E+PY+ T WEE G ++I+Q + V + S K+++G Sbjct: 350 TPEEICANIIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIG 409 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 G I I+ EA ++ +I V + L VK+ K Sbjct: 410 PKGHVISQIAQEAGHDLMDIFLCDVDIRLSVKLLK 444 >gi|293363515|ref|ZP_06610271.1| GTP-binding protein Era [Mycoplasma alligatoris A21JP2] gi|292552864|gb|EFF41618.1| GTP-binding protein Era [Mycoplasma alligatoris A21JP2] Length = 290 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 144/282 (51%), Gaps = 7/282 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 ++G N GKS+L+N + +SIVT QTTR + G+ +E+ Q++F DTPGI + Sbjct: 7 TIIGRPNVGKSSLLNAILSYNLSIVTATPQTTRDQIMGVYNEEGYQVIFTDTPGIHKPIN 66 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK- 144 + + ++ T+K D+V + L +L+ I K I I++KID +K Sbjct: 67 KLGDALNKNAYDTLKENDLVIFLSPGDEMLGKGDLMILENI-KNIENKIAIVSKIDKIKS 125 Query: 145 -PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP-WVYSADQISDLP 202 PE L+E+ E N F K + ++T L + T Y D ++D Sbjct: 126 QPELLVEKIERLNNYNF--KQIISTSTFNDKSISSLIEIIKTFAYEDNAYYDEDFLTDKT 183 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 M EI RE L++E+P+S + E + E +D SI I IYV++ SQK +++G+ Sbjct: 184 MRFLAKEIIRESAINALYEELPHSIAIDIEDFIESED-SIEINAYIYVKKDSQKGMVIGE 242 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 G+ IK I + A+K+I+ + V+L L VKV K W D K Sbjct: 243 GGKKIKQIGMLARKKISAQFDTKVNLNLSVKVAKKWVDDEKA 284 >gi|237751075|ref|ZP_04581555.1| GTP-binding protein Era [Helicobacter bilis ATCC 43879] gi|229373520|gb|EEO23911.1| GTP-binding protein Era [Helicobacter bilis ATCC 43879] Length = 300 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 148/296 (50%), Gaps = 15/296 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV----SEKESQIVFLDT 77 SG ++++G TNAGKSTL+N V + +++V+ K+ TR + IV S+ SQ++F+DT Sbjct: 3 SGFISVIGRTNAGKSTLLNNLVKSPIALVSKKINATRKRMDIIVPFEDSDYNSQLIFIDT 62 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG+ +K ++ M++ + + +D+ V + + K I + + + I++L Sbjct: 63 PGLHESKKLLNEYMLQEAKKAVGDSDLSVFVAVASPK-KSEILHYKNFLDQHDKKHIVLL 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD-----VLNYLCSTLPLAPWV 192 NKID + LLE E + + K + K + +L+ L LP+ P Sbjct: 122 NKIDTLNKNELLECLESYKQ--YQNKNLGIIPIKAKELNSQTIHSILSLLAKNLPIHPHF 179 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 Y D IS M E RE +F EIPY S V K +K +IL I+ I V Sbjct: 180 YDNDMISTTIMRDIYKEAIREAVFERFSDEIPYESDVKILKITQKP--TILYIKAQIIVA 237 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 + SQK +++GKNG+ IK++ A+K+ + EQ + L L VK K W Q Sbjct: 238 KDSQKAMIIGKNGETIKSLGSIARKKCEYLAEQKIFLELIVKTIKGWNTSKDTLKQ 293 >gi|3415109|gb|AAC31603.1| Era GTPase A protein [Homo sapiens] Length = 443 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 102/335 (30%), Positives = 160/335 (47%), Gaps = 50/335 (14%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +NSR V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 109 HHPDMPENSRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQ 168 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 ++ LDTPGI + K H L + L W +++ AD+V ++VD + N LL+ Sbjct: 169 VILLDTPGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRC 228 Query: 126 IAKRSS-RLILILNKIDCVKPERLLEQ--AEIANKLV----------------------- 159 + K S +L++NK+DC+K + +L + A + +V Sbjct: 229 LTKYSQIPSVLVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPA 288 Query: 160 ------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 ++ FM+SA + YL + PW Y + ++ Sbjct: 289 VKDPNTQSVGNPQRIGWPHFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQ 348 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 A I REKL HL +E+PY+ T WEE G ++I+Q + V + S K+++G Sbjct: 349 TPEEICANIIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIG 408 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 G I I+ EA ++ +I V + L VK+ K Sbjct: 409 PKGHVISQIAQEAGHDLMDIFLCDVDIRLSVKLLK 443 >gi|24307899|ref|NP_005693.1| GTPase Era, mitochondrial [Homo sapiens] gi|57015286|sp|O75616|ERAL1_HUMAN RecName: Full=GTPase Era, mitochondrial; Short=H-ERA; Short=hERA; AltName: Full=Conserved ERA-like GTPase; Short=CEGA; AltName: Full=ERA-W; AltName: Full=ERA-like protein 1; Flags: Precursor gi|17512227|gb|AAH19094.1| Era G-protein-like 1 (E. coli) [Homo sapiens] gi|119571532|gb|EAW51147.1| Era G-protein-like 1 (E. coli), isoform CRA_b [Homo sapiens] gi|123984413|gb|ABM83552.1| Era G-protein-like 1 (E. coli) [synthetic construct] gi|123998381|gb|ABM86792.1| Era G-protein-like 1 (E. coli) [synthetic construct] gi|193785748|dbj|BAG51183.1| unnamed protein product [Homo sapiens] Length = 437 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 102/335 (30%), Positives = 160/335 (47%), Gaps = 50/335 (14%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +NSR V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HHPDMPENSRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQ 162 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 ++ LDTPGI + K H L + L W +++ AD+V ++VD + N LL+ Sbjct: 163 VILLDTPGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRC 222 Query: 126 IAKRSS-RLILILNKIDCVKPERLLEQ--AEIANKLV----------------------- 159 + K S +L++NK+DC+K + +L + A + +V Sbjct: 223 LTKYSQIPSVLVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPA 282 Query: 160 ------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 ++ FM+SA + YL + PW Y + ++ Sbjct: 283 VKDPNTQSVGNPQRIGWPHFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQ 342 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 A I REKL HL +E+PY+ T WEE G ++I+Q + V + S K+++G Sbjct: 343 TPEEICANIIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIG 402 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 G I I+ EA ++ +I V + L VK+ K Sbjct: 403 PKGHVISQIAQEAGHDLMDIFLCDVDIRLSVKLLK 437 >gi|225351950|ref|ZP_03742973.1| hypothetical protein BIFPSEUDO_03555 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157197|gb|EEG70536.1| hypothetical protein BIFPSEUDO_03555 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 298 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 139/290 (47%), Gaps = 20/290 (6%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIR 93 GKSTL+N +G +++I + + +TTR +RGI++ +QIV +DTPGI + + + Sbjct: 2 GKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPRTLLGQRLND 61 Query: 94 LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSS-------RLILILNKID 141 + ++ D V ++ S++E+ +L + KR L+ I+ KID Sbjct: 62 VVDESLADVDAVAFLLPSNQEIGPGDKRILSRLRSDFAVKRDDGTFKWKVPLVAIVTKID 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 + + L+ + N+ VSA K +V N L +P P +Y A+QI++ Sbjct: 122 ELSRDGLINKLIEINEFADFTDIVPVSALKHDNLAEVKNVLIENMPEGPQMYPAEQITEE 181 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE--------EKKDGSILIRQVIYVERP 253 AE+ R L E+P+S VV + E E DG + IYVER Sbjct: 182 RPEETIAELVRGAFLEELDDELPHSLAVVVDSIEYPEDNDSGEAYDGKAHVIVSIYVERD 241 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++GK +++ + + + + I+ Q L L VKV K W DPK Sbjct: 242 SQKPIIIGKGAEHLVRVKKKLRTPVNRIVGQKAKLDLHVKVAKGWQSDPK 291 >gi|119571531|gb|EAW51146.1| Era G-protein-like 1 (E. coli), isoform CRA_a [Homo sapiens] Length = 331 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 101/329 (30%), Positives = 158/329 (48%), Gaps = 50/329 (15%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +NSR V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q++ LDT Sbjct: 3 ENSRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQVILLDT 62 Query: 78 PGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSS 131 PGI + K H L + L W +++ AD+V ++VD + N LL+ + K S Sbjct: 63 PGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQ 122 Query: 132 -RLILILNKIDCVKPERLLEQ--AEIANKLV----------------------------- 159 +L++NK+DC+K + +L + A + +V Sbjct: 123 IPSVLVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKDPNT 182 Query: 160 ------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFT 207 ++ FM+SA + YL + PW Y + ++ Sbjct: 183 QSVGNPQRIGWPHFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEIC 242 Query: 208 AEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNI 267 A I REKL HL +E+PY+ T WEE G ++I+Q + V + S K+++G G I Sbjct: 243 ANIIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVI 302 Query: 268 KTISLEAKKEIAEILEQPVHLILFVKVQK 296 I+ EA ++ +I V + L VK+ K Sbjct: 303 SQIAQEAGHDLMDIFLCDVDIRLSVKLLK 331 >gi|222823763|ref|YP_002575337.1| GTP-binding protein Era [Campylobacter lari RM2100] gi|254783290|sp|B9KGA1|ERA_CAMLR RecName: Full=GTPase Era gi|222538985|gb|ACM64086.1| GTP-binding protein Era [Campylobacter lari RM2100] Length = 290 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 150/279 (53%), Gaps = 5/279 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG TNAGKS+++N + K+++V+HK TR + I+ +++Q++F+DTPG+ Sbjct: 2 KSGFVSIVGRTNAGKSSILNSLLEEKIAMVSHKQNATRRKINAIIMHEKNQVIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + ++LMI L+ +I D++ V + ++ ++ + LK K I+++NK+ Sbjct: 62 HASSKAINQLMIDLAIKSIADCDVILFVASIYDDI-IDYENFLKLNPKVPH--IVLINKV 118 Query: 141 DCVKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D + LL + N+ + S + +L+ L LP P+ + + I+ Sbjct: 119 DLADKKTLLSKLAQYNQFSSYFSAIIPYSIKQKFHKKILLDELVKYLPEHPYYFDPEFIT 178 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 + E ++ +L EIPY++ V +K +E K I I S K ++ Sbjct: 179 TTNEKDIYRDFILEAIYENLSDEIPYTTEVRIDKIKELK-TIYYINATIISSTNSHKGMI 237 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 LGK+G IK I EA+ +I ++ ++ V L LFV+++K+W Sbjct: 238 LGKDGATIKRIGKEARVKIEKLAQKKVMLKLFVQLEKNW 276 >gi|196007528|ref|XP_002113630.1| hypothetical protein TRIADDRAFT_57257 [Trichoplax adhaerens] gi|190584034|gb|EDV24104.1| hypothetical protein TRIADDRAFT_57257 [Trichoplax adhaerens] Length = 378 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 149/331 (45%), Gaps = 62/331 (18%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL+G NAGKSTL N VG KV V K QTTR GI++ +QIV +D+PG ++ Sbjct: 51 VALLGEPNAGKSTLTNVLVGRKVVPVCRKPQTTRERSSGIITFGSTQIVLVDSPGTL-SR 109 Query: 85 DSYHKLMIRLSWST-----IKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLI 134 D K + + +T AD++ ++VD + L I ++L E S + Sbjct: 110 DIRRKYYMSKALATGPRDCATDADLLAVLVDVGNKRTRDHLSEEILEILHEFDTIPS--V 167 Query: 135 LILNKIDCVKPERL----------------------------------------LEQAEI 154 L+LNK+D ++ E L ++ A+ Sbjct: 168 LVLNKVDVIRKEILLDLIDKLTDNYQETKPTIKLKEPTIKLAPKKKSYIIVDESIKNADN 227 Query: 155 ANKLVFIEKT---------FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 + K + K FM+SA G G D + YL S W Y+ Q++ L Sbjct: 228 SLKKQSVRKNGGWKNFKEVFMISARTGDGVDMLQEYLVSQAKPGNWQYNMKQLTSLSPSR 287 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 F EI REKL HL ++PY W +G++ I Q I R Q I++G G+ Sbjct: 288 FVEEIIREKLLGHLPHDLPYILKQSNLFWHLSDNGTLRIHQSIDCRRNGQMSIVIGPRGK 347 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 I+TIS EAK ++ E PV L++ V+++K Sbjct: 348 VIRTISEEAKADLEEAFGCPVELLVKVRLRK 378 >gi|301167245|emb|CBW26827.1| GTP-binding protein [Bacteriovorax marinus SJ] Length = 335 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 147/293 (50%), Gaps = 13/293 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +++S VA++GA N GKS+LVN +G +S+VT+K QTTR+ + + + ++IV +DTP Sbjct: 18 DNKSIMVAVLGAPNVGKSSLVNYLLGMDLSVVTNKAQTTRNKIHCVFTVDRTEIVLVDTP 77 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILIL 137 G+ +K + + + AD+ L+VD R + + D + + + + ++ ++ Sbjct: 78 GLHKTNQELNKRLNEQAREGVDGADLNLLLVDLTRPVLGQLEDFKENMESDKFAKTWVLF 137 Query: 138 NKIDCVKPERLLEQAEIANK----LVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K D V+ + L + + +K + IEK ++S G ++ L P Y Sbjct: 138 TKCDRVENYKELPLSLVMDKMQELMPEIEKGIVISTKDGTNMHNLTGLLVDEAAPGPHYY 197 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE--KKDGSIL------IR 245 +S+ F E RE+ F L+ E+PY VV +++++ K G I Sbjct: 198 GDGSVSNKNERFFATEYIREQAFELLNAELPYELAVVIDEYKDMKPKRGETETKVKSHIS 257 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I V RPSQ+ I++G G IK I ++K+I ++ VHL L VKV W Sbjct: 258 ASILVNRPSQRAIVVGSKGGMIKEIGTRSRKKIEAMVGGQVHLNLHVKVSPKW 310 >gi|149643011|ref|NP_001092492.1| GTP-binding protein era homolog [Bos taurus] gi|322518596|sp|A5PK43|ERAL1_BOVIN RecName: Full=GTPase Era, mitochondrial; AltName: Full=ERA-like protein 1; Flags: Precursor gi|148745519|gb|AAI42349.1| ERAL1 protein [Bos taurus] gi|296476862|gb|DAA18977.1| Era-like 1 [Bos taurus] Length = 437 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/337 (29%), Positives = 162/337 (48%), Gaps = 54/337 (16%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H+ + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTRS G+++EKE+Q Sbjct: 103 HRPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRSQALGVITEKETQ 162 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPG+ + AK H L + L W +++ AD+V ++VD + +L + Sbjct: 163 VILLDTPGLISPAKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQVLRC 222 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLV--------------------- 159 L + ++ S IL++NK+DC+K + +L + A + +V Sbjct: 223 LTQFSQVPS--ILVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKTKQALRSRPDTHCPS 280 Query: 160 --------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ++ FM+SA + YL + PW + ++ ++ Sbjct: 281 PAAQGPNPQPVRDPQQMGWPHFQEIFMLSALSQEDVKTLKQYLLAQARPGPWEFHSEVLT 340 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 A + REKL +L +E+PY+ T W+E G ++I Q + V + S KI+ Sbjct: 341 SQTPEEICANMIREKLLEYLPEEVPYNVQQKTVVWDEGPSGELVIEQKLLVSKESHMKIL 400 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 +G G I I+ E +++ I V L L VK+ K Sbjct: 401 IGPKGYLIAQIAQEVGRDLMNIFLCEVQLRLSVKLLK 437 >gi|269101847|ref|ZP_06154544.1| GTP-binding protein Era [Photobacterium damselae subsp. damselae CIP 102761] gi|268161745|gb|EEZ40241.1| GTP-binding protein Era [Photobacterium damselae subsp. damselae CIP 102761] Length = 270 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/267 (32%), Positives = 144/267 (53%), Gaps = 14/267 (5%) Query: 47 VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIV 105 +SI + K QTTR + G+ + Q V++DTPG+ K + ++LM R + S++ ++V Sbjct: 1 MSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHIEEKRAINRLMNRAASSSLTDVELV 60 Query: 106 CLVVDSHRELKVNIHD---LLKEIAKRSSRLILILNKIDCVKPERLL--EQAEIANKLVF 160 +VD V D +L+++ K +L++NK+D VK + L EIA+K+ F Sbjct: 61 LFLVDG----TVWTQDDEMVLRKLEKAQLPTVLLVNKVDNVKEKYDLFPHMQEIASKMNF 116 Query: 161 IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLH 220 ++ VSA G + V + + LP + + + ++D +EI REKL Sbjct: 117 VD-VVPVSAKHGTNIEVVEKIVRNHLPECDYYFPEEYVTDRSQRFMASEIIREKLMRFTG 175 Query: 221 KEIPYSSCVVTEKWE--EKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEI 278 E+PYS V E+++ + DG I +I VER QKK+++GK GQ IK I EA+ ++ Sbjct: 176 DELPYSVTVEIERFDYNPETDG-FDINGLILVERTGQKKMVIGKAGQKIKVIGREARIDM 234 Query: 279 AEILEQPVHLILFVKVQKDWGHDPKCC 305 E+ E+ V+L L+VKV+ W D + Sbjct: 235 EELFERKVYLELWVKVKSGWADDERAL 261 >gi|119953438|ref|YP_945647.1| GTP-binding protein Era [Borrelia turicatae 91E135] gi|254783287|sp|A1R085|ERA_BORT9 RecName: Full=GTPase Era gi|119862209|gb|AAX17977.1| GTP-binding protein era-like [Borrelia turicatae 91E135] Length = 290 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 157/284 (55%), Gaps = 1/284 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G + GKSTL+N ++SI++ QTTR+ ++GI ++K QI+F+DTPG Sbjct: 2 KSGFVSIIGRPSTGKSTLLNSICEHQISIISSIPQTTRNKIKGIFTDKRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K ++ ++ S IK +++ V+D + + +++L I+K ++++NKI Sbjct: 62 HLSKKQFNIALMHNVHSAIKETELILYVIDIQDKPGIEENEILTIISKSKINFLVVINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D K + + K + + +SA + +++ + + L P Y + +D Sbjct: 122 DIQKTKEREIMIFLEEKGIKKDNIIKISAEQKINIEEIKDKIYENLQEGPLYYPEEYYTD 181 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 M T+EI R L +E+PYS + E E++K+ + I+ I V SQK I++ Sbjct: 182 QEMNLRTSEIIRGVTIKKLKEELPYSLYIEIEILEDRKN-KLFIKANIIVAVESQKGIIV 240 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 GK G+ IKTI EA+K I+EI E+ L L VK++K+W +PK Sbjct: 241 GKGGKGIKTIGEEARKIISEIFEKKCDLFLQVKLRKNWNKNPKL 284 >gi|255327124|ref|ZP_05368199.1| GTP-binding protein Era [Rothia mucilaginosa ATCC 25296] gi|255295742|gb|EET75084.1| GTP-binding protein Era [Rothia mucilaginosa ATCC 25296] Length = 380 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 157/348 (45%), Gaps = 64/348 (18%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +LVG NAGKSTL N VG KV+I +++ QTTR +RGIV + E Q++ +DTPGI Sbjct: 27 RSGFASLVGRPNAGKSTLTNAMVGQKVAITSNRPQTTRHTIRGIVHKDEYQLILVDTPGI 86 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + + L ST+ D++ + ++ ++ + ++ S++ ++ I+ K Sbjct: 87 HRPRTLLGERLNDLVASTLSQVDVLGFCIPANEKIGPGDRYIASQLVASSNKPVVAIVTK 146 Query: 140 IDCVKPERLLEQAEIANKL----------VFIEKTFMVSATKGHGC-DDVLNYLCSTLPL 188 D V E L EQ L ++ + KG G +D + + + P Sbjct: 147 ADTVSSEELREQLLAVEALGEEVMSAERAARAKRAAHRAKQKGKGGKNDAVPFAKGSGPA 206 Query: 189 A-----------------PWV----------YSADQISDL-------------------- 201 A W + D ++DL Sbjct: 207 AKRRAGEVAEPMPVDGKGGWAAIIPVSAVKHFQVDAVADLLAQYTPLSPPLYPEGELTDE 266 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK----DGSILIRQV-IYVERPSQK 256 P AE+ RE +E+P+S V E+ E ++ D +L V +YVER SQK Sbjct: 267 PEATLIAELVREAALEGAREELPHSIAVTVEEMEFREGRPADNPLLDVHVNLYVERESQK 326 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 I++GK G N++ I +A+++I +L ++L + VKV K+W D + Sbjct: 327 YIIIGKGGSNLRKIGTKAREQIEAMLGTRIYLNIHVKVAKEWQSDARA 374 >gi|219363705|ref|NP_001136454.1| hypothetical protein LOC100216562 [Zea mays] gi|194695756|gb|ACF81962.1| unknown [Zea mays] gi|195627606|gb|ACG35633.1| GTP-binding protein era [Zea mays] Length = 236 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 88 HKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 HKL M++ S I AD V +V D+ + + I ++L+E + + L +L+LNK D Sbjct: 2 HKLDSMMMKNVRSAIGSADCVLVVADACKTPE-KIDEMLEEGVGNKDIGLPVLLVLNKKD 60 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 +KP + ++ E K ++ +SA GHG DD+ ++ S LPL P Y D S+ Sbjct: 61 LIKPGEIAKKLEWYQKFTNVDDVIPISAKFGHGVDDIKEWILSKLPLGPAYYPKDIASEH 120 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 P F EI REK+F+ +EIPYS V ++ + I+ I VE+ SQ+ I+LG Sbjct: 121 PERFFVGEIVREKIFVQYRQEIPYSCQVNVVSYKSRPAAKDFIQVEILVEKESQRGIILG 180 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 K+G++IK ++ ++ +I + L++ V+L + VKV+++W D + Sbjct: 181 KDGKSIKMLATASRLDIEDFLQKKVYLEVEVKVKENWRQDER 222 >gi|157165568|ref|YP_001466814.1| GTP-binding protein Era [Campylobacter concisus 13826] gi|189037252|sp|A7ZDF6|ERA_CAMC1 RecName: Full=GTPase Era gi|112801332|gb|EAT98676.1| GTP-binding protein Era [Campylobacter concisus 13826] Length = 289 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 142/289 (49%), Gaps = 7/289 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKS+ +N + K++IV+HK TR + GIV E QI+F DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSSFLNALLNEKIAIVSHKQNATRRKINGIVMNGEDQIIFTDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNK 139 + + ++L+I + ++ D++ + H + D K +A + IL+L K Sbjct: 62 HESNKAINQLLISQAIKSMGDCDLIVFLAPIHDD----TSDYEKFLALNPEKPHILVLTK 117 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD-VLNYLCSTLPLAPWVYSADQI 198 +D ++LE+ K + +TK +L+ +C LP + Y + + Sbjct: 118 VDESSNAKVLEKITKYQKFQDKFAALLTFSTKQPTYKKPLLDEICKLLPEHEYFYDPEFL 177 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 + E E ++ +L EIPY S + + +EK G I I ER K + Sbjct: 178 TPTNEKEIFREFILEAIYENLSDEIPYLSDAIIKSVKEKT-GITEIYASIITERDIHKSM 236 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 ++GKNG+ IK I + A+K I + V L L V V+K W + K Q Sbjct: 237 IIGKNGETIKRIGIFARKLIQNLTNTKVFLKLDVVVKKGWSKEEKSLNQ 285 >gi|296202160|ref|XP_002748398.1| PREDICTED: GTP-binding protein era homolog [Callithrix jacchus] Length = 480 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/335 (28%), Positives = 161/335 (48%), Gaps = 54/335 (16%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 146 HHPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQ 205 Query: 72 IVFLDTPGIFNA-KDSYHKLMIRL---SWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPGI + K H L + L W +++ AD+V ++VD + +L + Sbjct: 206 VILLDTPGIISPVKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLNPQLLRC 265 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLV--------------------- 159 L + ++ S IL++NK+DC+K + +L + A + +V Sbjct: 266 LTKFSQVPS--ILVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPS 323 Query: 160 --------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ++ FM+SA + YL + PW Y ++ ++ Sbjct: 324 PAVKDSNTQSVGSPQRIGWPHFQEIFMLSALSQEDVQTLKKYLLAQAQPGPWEYHSEVLT 383 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 + A I REKL +L +E+PY+ T WEE G ++I+Q + V + S +++ Sbjct: 384 NQTPEEICANIIREKLLEYLPQEVPYNVQQKTVVWEEGPSGELVIQQKLLVPKESYMRLL 443 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 +G G I I+ EA +++ I V + L VK+ Sbjct: 444 IGPKGHMISQIAQEASRDLMNIFLCDVDIRLSVKL 478 >gi|57242463|ref|ZP_00370401.1| GTP-binding protein Era [Campylobacter upsaliensis RM3195] gi|57016748|gb|EAL53531.1| GTP-binding protein Era [Campylobacter upsaliensis RM3195] Length = 291 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 152/283 (53%), Gaps = 7/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++L+G TNAGKSTL+N + K+++V+HK TR ++ IV + ++Q++F+DTPG+ Sbjct: 2 KSGFISLIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMQDDNQLIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 +K + ++L+++ + +K D++ V E I D K + +S +++LNK Sbjct: 62 HESKATLNQLLVQSALKAMKDCDVIVFVASIFDE----ISDYEKFLTLKSQIPHLVVLNK 117 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D K E +L++ +E A + S + L+ + LP Y ++ + Sbjct: 118 VDLAKNEEVLQKLSEYAKFSGDFQAILPYSCKQKSYKKAFLDEIVKLLPSHTHFYDSEFL 177 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 + + E L+ +L +E+PY S ++ + +EK I+ Q+I + S K + Sbjct: 178 TPSSEKELFRDFILESLYENLSEELPYCSEILMQSVKEKPHLLIIHAQII-TDTNSHKAM 236 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ++GK G ++ I +A+ +I + ++ V L LFV ++K W D Sbjct: 237 IIGKEGATLRRIGQKARIKIENLTQKKVLLKLFVVIKKAWQKD 279 >gi|322518653|sp|Q5EBA0|ERAL1_RAT RecName: Full=GTPase Era, mitochondrial; AltName: Full=ERA-like protein 1; Flags: Precursor Length = 437 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 98/337 (29%), Positives = 161/337 (47%), Gaps = 54/337 (16%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HTPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQ 162 Query: 72 IVFLDTPGIFNA-KDSYHKLMIRL---SWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPGI + K H L + L W +++ AD+V ++VD + L + Sbjct: 163 VILLDTPGIISPVKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRSRLSPQVLQC 222 Query: 123 LKEIAKRSSRLILILNKIDCVKPERL-------LEQAEIANKLV---------------- 159 L + ++ S IL+LNK+DC+K + + L + + K++ Sbjct: 223 LTKFSQVPS--ILVLNKVDCLKQKSVLLELTAALTEGVVNGKMLNVRQAFRSRPSTHCPG 280 Query: 160 --------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 + ++ FM+SA + + YL + PW + + ++ Sbjct: 281 PETEDPNTHAVRSPQRTGWPYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLT 340 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 A REKL +L +E+PYS T WEE G ++I+Q + V + S +I+ Sbjct: 341 SQTPEEICANKIREKLLEYLPEEVPYSVQQKTVIWEEGPSGELVIQQNLLVPKESHVRIL 400 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 +G+ G I I+ E +++ +I V L L VK+ K Sbjct: 401 IGQKGLLISQIAQEVSQDLMDIFLCDVLLRLSVKLLK 437 >gi|313678251|ref|YP_004055991.1| GTP-binding protein Era [Mycoplasma bovis PG45] gi|312950737|gb|ADR25332.1| GTP-binding protein Era [Mycoplasma bovis PG45] Length = 290 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 144/278 (51%), Gaps = 4/278 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N GKS+L+N+ + ++IV++ QTTR + G+ +E + Q VF+DTPGI Sbjct: 6 ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTENDYQFVFVDTPGIHKPL 65 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + ++S+I D + + + E+K +L+ IA ++ I +++KID K Sbjct: 66 NLLGESLNKEAFSSINDIDCILFLTPVNEEIKSGDKLILERIANSKNK-IAVISKIDLAK 124 Query: 145 -PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 P+ + ++ + + F +K VS D ++ L AP Y D I+D M Sbjct: 125 SPDDISKKIKSLEEFNF-QKIISVSNKNDKSIDSLIEILKEYSYEAPPFYDEDYITDKSM 183 Query: 204 FHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKN 263 E RE L E+P+S V + + E++D I I +IYV++ SQK I++GK Sbjct: 184 RFMAKEYIRESAINLLTDELPHSIAVEVQDFIEEED-RITINAIIYVKKDSQKGILIGKG 242 Query: 264 GQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 IK I A+ +++ V L L VKV W +D Sbjct: 243 ASMIKKIGTNARMKMSHQFNSKVTLNLKVKVSNKWIND 280 >gi|284931431|gb|ADC31369.1| GTP-binding protein Era [Mycoplasma gallisepticum str. F] Length = 300 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 154/288 (53%), Gaps = 11/288 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V + G + GKSTL+N+ +KV+I++ QTTR+++ + + + LDTPG Sbjct: 3 KSGIVVITGLASVGKSTLINKIANSKVAIISKYDQTTRNVIAHKIVHDKIDYLLLDTPGF 62 Query: 81 FNAKDSYHKLMIRLSW---STIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILI 136 S++KL + L+ KHA L+VDS ++ + +LLK + + + LI+I Sbjct: 63 HK---SFNKLSLFLNSEIKQAYKHAHACILIVDSTKKPTDDFTNLLKIMKSYEMNNLIVI 119 Query: 137 LNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +KID +K E + +A+ + N+ + KT + H D + L L + Sbjct: 120 YSKIDLIKNEDHINEAQQLINESFKVVKTIKANLLSDHLNDQIDEGLEQLLD-ENYQLPE 178 Query: 196 DQISDLPMFHF-TAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 ++ + +F EI REK+ + +E+P+S V+ E + ++ + I I ER Sbjct: 179 SELDENEKDNFEIKEIIREKILNNTFQEVPHSVAVIIEAKKYDQEKKLFNIECAIVTERE 238 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQKKI++GK G IK I +A+ E+ I + ++L LFVKV+K+W +D Sbjct: 239 SQKKIIIGKQGSMIKKIGTQARNELLNIYDCKINLKLFVKVEKEWRND 286 >gi|185179024|ref|ZP_02964773.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024049|ref|ZP_02996802.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518321|ref|ZP_03003835.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524324|ref|ZP_03004361.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867961|ref|ZP_03079958.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273309|ref|ZP_03205845.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554232|ref|YP_002284938.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550907|ref|ZP_03771856.1| GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551511|ref|ZP_03772457.1| GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226741403|sp|B5ZBZ8|ERA_UREU1 RecName: Full=GTPase Era gi|184209115|gb|EDU06158.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019082|gb|EDU57122.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998143|gb|EDU67240.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659806|gb|EDX53186.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660357|gb|EDX53617.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249829|gb|EDY74609.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541733|gb|ACI59962.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379326|gb|EEH01691.1| GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380061|gb|EEH02423.1| GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 300 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 155/287 (54%), Gaps = 15/287 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G VA+VG N GKSTL+N + KVSI+++K QTTR+ ++ I + +S I+F DTPG Sbjct: 4 KYGIVAIVGKPNVGKSTLINAIMRKKVSIISNKPQTTRNAIKEIYEDDDSAIIFTDTPGF 63 Query: 81 F---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLI 134 N D + I +S+ K A+++ V +EL + I +L+KE K + +I Sbjct: 64 HEPSNKLDLFLNHEIEVSY---KEANVILFVSSMDKELSEDDFEIINLIKESNKEN--VI 118 Query: 135 LILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV- 192 L+++K + K +++ E+ NK + + +SA D ++N + L Sbjct: 119 LVISKAEVAKNQDKIDERVHQLNKYIQFKDVIQISALHVINIDKLINTIKQYLHKDVVTD 178 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVIYVE 251 Y ++ F AE RE+ L+L+ E+P+ V + E ++ +I+ I +E Sbjct: 179 YFRQKVEKEDKF-IIAETIREQCLLNLNHEVPHGVGVEIDESKYNQEANHWIIKASIIIE 237 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + S K I++G+NG IK IS+ A+K++ EI + + L +FVKV+ +W Sbjct: 238 KNSHKPIVIGQNGAMIKKISMAARKQLHEIYDCHISLTIFVKVENNW 284 >gi|46189236|gb|AAH68271.1| Eral1 protein [Mus musculus] Length = 437 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 96/337 (28%), Positives = 162/337 (48%), Gaps = 54/337 (16%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HTPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQ 162 Query: 72 IVFLDTPGIFNA-KDSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPGI + K H L ++ W++++ AD+V ++VD + L + Sbjct: 163 VILLDTPGIISPVKQKRHHLERSLLEDPWTSMESADLVVVLVDVSDKWTRSRLNPQVLQC 222 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLV--------------------- 159 L + ++ S IL+LNK+DC+K + +L + A + +V Sbjct: 223 LTKFSQVPS--ILVLNKVDCLKQKSVLLELTAALTEGVVNGKKLNIKQALRSRSSTHCPG 280 Query: 160 --------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 + ++ FM+SA + + YL + PW + + ++ Sbjct: 281 PETEGPNAHSVRNPQRIGWPYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLT 340 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 A REKL +L +E+PY T WEE G ++I+Q + V + S +I+ Sbjct: 341 SQTPEEICANKIREKLLEYLPEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRIL 400 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 +G+ G +I I+ E +++ +I V + L VK+ K Sbjct: 401 IGQKGLSISQIAQEVGRDLMDIFHCDVLIRLSVKLLK 437 >gi|31544597|ref|NP_853175.1| GTP-binding protein Era [Mycoplasma gallisepticum str. R(low)] gi|31541442|gb|AAP56743.1| GTP-binding protein Era [Mycoplasma gallisepticum str. R(low)] gi|284930657|gb|ADC30596.1| GTP-binding protein Era [Mycoplasma gallisepticum str. R(high)] Length = 300 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 154/288 (53%), Gaps = 11/288 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V + G + GKSTL+N+ +KV+I++ QTTR+++ + + + LDTPG Sbjct: 3 KSGIVVITGLASVGKSTLINKIANSKVAIISKYDQTTRNVIAHKIVHDKIDYLLLDTPGF 62 Query: 81 FNAKDSYHKLMIRLSW---STIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILI 136 S++KL + L+ KHA L+VDS ++ + +LLK + + + LI+I Sbjct: 63 HK---SFNKLSLFLNSEIKQAYKHAHACILIVDSTKKPTDDFINLLKIMKSYEMNDLIVI 119 Query: 137 LNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +KID +K E + +A+ + N+L + K + H D + L L + Sbjct: 120 YSKIDLIKNEDHINEAQQLINELFKVVKMIKANLLSDHLNDQIDEGLEQLLD-ENYQLPE 178 Query: 196 DQISDLPMFHF-TAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERP 253 ++ + +F EI REK+ + +E+P+S V+ E + ++ + I I ER Sbjct: 179 SELDENEKDNFEIKEIIREKILNNTFQEVPHSVAVIIEAKKYDQEKKLFNIECAIVTERE 238 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 SQKKI++GK G IK I +A+ E+ I + ++L LFVKV+K+W +D Sbjct: 239 SQKKIIIGKQGSMIKKIGTQARNELLNIYDCKINLKLFVKVEKEWRND 286 >gi|315639031|ref|ZP_07894201.1| GTP-binding protein Era [Campylobacter upsaliensis JV21] gi|315480943|gb|EFU71577.1| GTP-binding protein Era [Campylobacter upsaliensis JV21] Length = 291 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 151/283 (53%), Gaps = 7/283 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++L+G TNAGKSTL+N + K+++V+HK TR ++ IV + ++Q++F+DTPG+ Sbjct: 2 KSGFISLIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMQDDNQLIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNK 139 +K + ++L+++ + +K D++ V E I D K +A K +++LNK Sbjct: 62 HESKATLNQLLVQSAMKAMKDCDVIVFVASVFDE----ISDYEKFLALKPQIPHLVVLNK 117 Query: 140 IDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +D K E +L++ +E A + S + +L+ + LP Y + Sbjct: 118 VDLAKNEEVLQKLSEYAKFSGDFQAILPYSCKQKSYKKALLDEIIKLLPKHEHFYDPAFL 177 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 + + E L+ +L +E+PY S ++ + +EK I+ Q+I + S K + Sbjct: 178 TPSNEKELFRDFILESLYENLSEELPYCSEILMQSVKEKPHLLIIHAQII-TDTNSHKAM 236 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ++GK G ++ I +A+ +I + ++ V L LFV ++K W D Sbjct: 237 IIGKEGATLRRIGQKARIKIENLTQKKVLLKLFVVIKKAWQKD 279 >gi|149053493|gb|EDM05310.1| Era (G-protein)-like 1 (E. coli), isoform CRA_a [Rattus norvegicus] Length = 331 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 97/331 (29%), Positives = 159/331 (48%), Gaps = 54/331 (16%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q++ LDT Sbjct: 3 ENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQVILLDT 62 Query: 78 PGIFNA-KDSYHKLMIRL---SWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 PGI + K H L + L W +++ AD+V ++VD + L + L + ++ Sbjct: 63 PGIISPVKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRSRLSPQVLQCLTKFSQ 122 Query: 129 RSSRLILILNKIDCVKPERL-------LEQAEIANKLV---------------------- 159 S IL+LNK+DC+K + + L + + K++ Sbjct: 123 VPS--ILVLNKVDCLKQKSVLLELTAALTEGVVNGKMLNVRQAFRSRPSTHCPGPETEDP 180 Query: 160 --------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 + ++ FM+SA + + YL + PW + + ++ Sbjct: 181 NTHAVRSPQRTGWPYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLTSQTPEE 240 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 A REKL +L +E+PYS T WEE G ++I+Q + V + S +I++G+ G Sbjct: 241 ICANKIREKLLEYLPEEVPYSVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGL 300 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 I I+ E +++ +I V L L VK+ K Sbjct: 301 LISQIAQEVSQDLMDIFLCDVLLRLSVKLLK 331 >gi|291405473|ref|XP_002719114.1| PREDICTED: Era-like 1 [Oryctolagus cuniculus] Length = 587 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 100/346 (28%), Positives = 160/346 (46%), Gaps = 54/346 (15%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 M GE H + +N R V ++GA NAGKSTL N+ +G KV V+ KV TTR Sbjct: 242 MHRGEQDLLLVHPPDMPENPRVLRVVILGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQ 301 Query: 61 VRGIVSEKESQIVFLDTPGIFNA-KDSYHKL---MIRLSWSTIKHADIVCLVVD-----S 111 G+++EKE+Q++ LDTPGI + K H+L ++ W +++ AD+V ++VD + Sbjct: 302 ALGVITEKETQVILLDTPGIISPVKQKRHQLEPSLLEDPWKSMESADLVVVLVDVSDKWT 361 Query: 112 HRELKVNIHDLLKEIAKRSSRLILILNKIDCVK------------PERLLEQAEIANKLV 159 +L I L + A+ S IL++NK+DC+K E ++ +I K Sbjct: 362 RNQLSPQIVQCLTQFAQVPS--ILVMNKVDCLKQKSVLLELTAALTEGVVNGKKIQMKQA 419 Query: 160 FIEKT-------------------------------FMVSATKGHGCDDVLNYLCSTLPL 188 F K FM+SA + YL + Sbjct: 420 FRSKPGSHHPSPVAKDSNTQSAGIARVTGWPHFQDIFMLSALSQEDVRTLKQYLLAKAQP 479 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 PW + + ++ A + R KL +L +E+PY+ T WEE G ++I Q + Sbjct: 480 GPWEFHSRVLTSQTPEEICANVIRAKLLEYLPQEVPYNVQQKTVVWEEGPCGELVILQKL 539 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 V + S +I++G+ GQ I I+ E +++ I V + L VK+ Sbjct: 540 LVPKESHVRILIGQKGQVISQIAQEVGRDLMNIFLCDVQIRLSVKL 585 >gi|156381162|ref|XP_001632135.1| predicted protein [Nematostella vectensis] gi|156219186|gb|EDO40072.1| predicted protein [Nematostella vectensis] Length = 383 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 149/297 (50%), Gaps = 26/297 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N+GKSTL+N+ VG K+ VT K TTR + RG+ + +QI+ LDTPG+ Sbjct: 83 VAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLVTQS 142 Query: 85 DSYHKLM----IRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRL--ILIL 137 + M I+ + ADI+ ++ D S++ + IH + + ++ + LIL Sbjct: 143 EGKRLKMTREHIKAPGDALDDADIIGVICDASNKRTRDRIHQQVLQALEQHVNIPSFLIL 202 Query: 138 NKIDCV--KPERLLEQAEIA-----NKLVFIE--------KTFMVSATKGHGCDDVLNYL 182 NKID + K + L+ AE++ ++ + E FMVSA G+G D+ YL Sbjct: 203 NKIDKLRHKVDLLVLAAELSKDRGRDEWGYTETGGWSEFDNVFMVSARLGNGVQDLREYL 262 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI 242 + W+Y D ++D+ + E+ REK+ EIP+ V E ++ + Sbjct: 263 VLRATPSDWLYPPDCVTDMGLESRVTEVFREKMLELYEHEIPWQVKQVPVLCELREGNKL 322 Query: 243 LIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 I Q +Y + SQ+K +L K ++T+ KKE+ E+ + L L V + + G Sbjct: 323 RIHQKLYCRKKSQRKCVLEK----VETLETLVKKELQEMFNCELDLSLDVGLSEKIG 375 >gi|165377197|ref|NP_071708.2| GTPase Era, mitochondrial [Mus musculus] gi|57012720|sp|Q9CZU4|ERAL1_MOUSE RecName: Full=GTPase Era, mitochondrial; Short=M-ERA; AltName: Full=Conserved ERA-like GTPase; Short=CEGA; AltName: Full=ERA-W; AltName: Full=ERA-like protein 1; Flags: Precursor gi|12848725|dbj|BAB28065.1| unnamed protein product [Mus musculus] gi|56206459|emb|CAI25706.1| Era (G-protein)-like 1 (E. coli) [Mus musculus] Length = 437 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/337 (28%), Positives = 161/337 (47%), Gaps = 54/337 (16%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HTPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQ 162 Query: 72 IVFLDTPGIFNA-KDSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPGI + K H L ++ W++++ AD+V ++VD + L + Sbjct: 163 VILLDTPGIISPVKQKRHHLERSLLEDPWTSMESADLVVVLVDVSDKWTRSRLNPQVLQC 222 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLV--------------------- 159 L + ++ S IL+LNK+DC+K + +L + A + +V Sbjct: 223 LTKFSQVPS--ILVLNKVDCLKQKSVLLELTAALTEGVVNGKKLNIKQALRSRSSTHCPG 280 Query: 160 --------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 + ++ FM+SA + + YL + PW + + ++ Sbjct: 281 PETEGPNAHSVRNPQRIGWPYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLT 340 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 A REKL +L +E+PY T WEE G ++I+Q + V + S +I+ Sbjct: 341 SQTPEEICANKIREKLLEYLPEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRIL 400 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 +G+ G I I+ E +++ +I V + L VK+ K Sbjct: 401 IGQKGLLISQIAQEVGRDLMDIFHCDVLIRLSVKLLK 437 >gi|294893594|ref|XP_002774550.1| GTP-binding protein era, putative [Perkinsus marinus ATCC 50983] gi|239879943|gb|EER06366.1| GTP-binding protein era, putative [Perkinsus marinus ATCC 50983] Length = 422 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 43/308 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL+GA NAGKS+L+N + ++ V+ KV TTR +RG+V++ + QIV +D PG+ A Sbjct: 88 VALIGAPNAGKSSLMNCMLNQSLAAVSPKVNTTREEIRGVVTDGDHQIVVIDAPGVIPAN 147 Query: 85 DSYH-KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS------------- 130 + + + R +W+ D+V LVVD+ R +++ DL++ IA + Sbjct: 148 QTKSCRALARDAWTGYNDCDLVLLVVDTLRRPDMDLVDLIRRIAPKPDLSTEYHERRNPD 207 Query: 131 ----------------SRLILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKG 172 ++L LNKID K +RL Q A+ + ++ F +SA K Sbjct: 208 LKQSAAVDEERESDKRPPVVLCLNKID--KSQRLWVQKRADQLKEHGAFKQIFFISAKKD 265 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE 232 G +L++L + W + D + LPM ++ R +F +K++PY T Sbjct: 266 RGVKALLHFLKTRSKEHIWPFPPDVKTTLPMVEQVEQLVRTYIFCWFNKDLPYKVEQQTV 325 Query: 233 KWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ-----PVH 287 W + DG + I + V+ +++ G + I+ + ++ +A LEQ P+ Sbjct: 326 GWTPRLDGGLTIEHELKVQDSIVLRMICGTRNRIIRRL----RQNVAYKLEQAWGIKPIQ 381 Query: 288 LILFVKVQ 295 L+++VK + Sbjct: 382 LVIWVKAK 389 >gi|291320054|ref|YP_003515312.1| GTP binding protein era [Mycoplasma agalactiae] gi|290752383|emb|CBH40354.1| GTP binding protein era [Mycoplasma agalactiae] Length = 290 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 143/278 (51%), Gaps = 4/278 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N GKS+L+N+ + ++IV++ QTTR + G+ +E Q VF+DTPGI Sbjct: 6 ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTEDGYQFVFVDTPGIHKPL 65 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + ++S++K D V + + ++K +L+ I ++ I I++KID K Sbjct: 66 NLLGESLNKEAFSSLKDIDCVLFLSPVNEDIKSGDKLILERITNAKNK-IAIISKIDLAK 124 Query: 145 -PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 P+ + ++ + + F K VS D ++ L AP Y D I+D M Sbjct: 125 SPDEIAKKIDDLKEYGF-SKIISVSNKNDKSVDSLIEILKEYAYDAPPFYDEDYITDKSM 183 Query: 204 FHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKN 263 E RE L E+P+S V + + E++D I I +IYV++ SQK I++GK Sbjct: 184 RFMAKEYIRESAINLLTDELPHSIAVEVQDFIEEED-RITINAIIYVKKDSQKGILIGKG 242 Query: 264 GQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 IK I A+ +++ + V L L VKV W +D Sbjct: 243 ASMIKKIGTNARMKMSNQFDTKVTLNLKVKVSNKWIND 280 >gi|219124036|ref|XP_002182319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406280|gb|EEC46220.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 306 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 147/293 (50%), Gaps = 26/293 (8%) Query: 28 VGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSY 87 +GA N GKSTL+N + + I T + QTTR + G++S + Q+ +DTPG+ +D Sbjct: 1 MGAPNMGKSTLLNALLEEDLCIATARPQTTRHAILGLMSTDKCQVCLVDTPGVI--EDPA 58 Query: 88 HKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 ++L M+ + +D++ +V D + +L ++ + +++ +NKID K Sbjct: 59 YELQEGMMEAVTGAVATSDVLLVVTDVF-STPIPDDELFLKVQRTRKPVLVAINKIDLAK 117 Query: 145 PERLLEQAEIANKLVFIEKT--------------FMVSATKG---HGCDDVLNYLCSTLP 187 + E +K V +E+ +SA++G G + L LP Sbjct: 118 KVNKAAE-ENRDKTVTVEEAVAFWRAQLPNALCILPLSASQGINNVGVVAMRRILTELLP 176 Query: 188 LAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 ++P +Y + ++D P +EI R LF L KE+PY V +++E K+ +IR Sbjct: 177 ISPPLYDPETLTDRPERFIASEIVRSALFQVLKKELPYCCEVRIREFKEPKEEGEVIRIA 236 Query: 248 --IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + VER SQK I++GKNG +K I + A++++ + L L VKV KDW Sbjct: 237 ADVLVERDSQKVIVIGKNGAQVKEIGVIAREKLEAFFRHQIFLNLSVKVDKDW 289 >gi|118475630|ref|YP_892169.1| GTP-binding protein Era [Campylobacter fetus subsp. fetus 82-40] gi|189037254|sp|A0RPN6|ERA_CAMFF RecName: Full=GTPase Era gi|118414856|gb|ABK83276.1| GTP-binding protein Era [Campylobacter fetus subsp. fetus 82-40] Length = 289 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 150/294 (51%), Gaps = 9/294 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++L+G TNAGKS+L+N + K+S+V+HK TR + GIV K+SQ +F+DTPG+ Sbjct: 2 KSGFISLIGRTNAGKSSLLNYLLNEKISMVSHKQNATRRKINGIVMHKDSQAIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + +KLM+ + +I D++ V ++ N L K+ + ++ + KI Sbjct: 62 HESNKTMNKLMVEAAIKSIGDCDLLLFVASVFDNIE-NYKKFLN--LKKDAPHLIAITKI 118 Query: 141 DCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV-LNYLCSTLPLAPWVYSADQ 197 D + + A++ ++ + K + + K ++ L+ + LP + Y Sbjct: 119 DEASDKEIF--AKLNEYQIYSDEFKAIIPLSVKKQAYKNILLDEIYKYLPEHEYFYDPQY 176 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++ + E ++ + E+PYS+ V +K EK++ + + +I + K Sbjct: 177 LTTANEREIFRDFILEAVYECVSDEVPYSTDVNVDKVVEKQNITEIYATII-TDNEHHKA 235 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQREIF 311 I++GKNGQ IK I + A+K I +L + L + VK+ K+W + + ++ Sbjct: 236 ILIGKNGQTIKRIGINARKIINTLLNNKIFLKINVKIDKNWNSNESIIKKNFLY 289 >gi|307128555|ref|YP_003880585.1| GTP-binding protein Era [Candidatus Sulcia muelleri CARI] gi|306483017|gb|ADM89887.1| GTP-binding protein Era [Candidatus Sulcia muelleri CARI] Length = 270 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 91/271 (33%), Positives = 143/271 (52%), Gaps = 26/271 (9%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V ++G N GKSTL+N +G +SIVT+K TTR+ + GI++ SQI+F DTPGI Sbjct: 4 KSGFVKIIGYPNVGKSTLINAIIGKNISIVTYKANTTRNNIIGILNLYNSQIIFYDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLV--VDSHREL---KVNIHDLLKEIAKRSSRLIL 135 ++Y K I ADIV + + + EL K+NI+ + I+ Sbjct: 64 I-INNNYIK-------KYITEADIVIYITEIGKNNELFFKKININ--------KFKFTII 107 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVLNYLCSTLPLAPWVY 193 +LNKID K + + + EI N ++ +SA + ++N + + +P P Y Sbjct: 108 LLNKID--KYQNYILKNEIFNLKSNYPDFYILEISALLKFNINKLINIIINNIPYHPPYY 165 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 D I+D EI R+ + L +KEIPY + TE ++E +D I IR +I+VER Sbjct: 166 PKDIITDRSERFIVNEIIRKNILLLYNKEIPYYVNITTEFFKE-EDNLINIRSLIFVERF 224 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 S KKI++G N + + +++ EI E+ Sbjct: 225 SHKKIIMGYNNISFNKLIKKSQIEITSFFEK 255 >gi|10441752|gb|AAG17176.1|AF190730_1 GTPase ERA-W [Mus musculus] Length = 331 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 96/331 (29%), Positives = 159/331 (48%), Gaps = 54/331 (16%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R V L+GA NAGKSTL N+ VG KV V+ KV TTR G+++EKE+Q++ LDT Sbjct: 3 ENPRVLRVVLLGAPNAGKSTLSNQLVGRKVFPVSKKVHTTRCQALGVITEKETQVILLDT 62 Query: 78 PGIFNA-KDSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 PGI + K H L ++ W++++ AD+V ++VD + L + L + ++ Sbjct: 63 PGIISPVKQKRHHLERSLLEDPWTSMESADLVVVLVDVSDKWNKNRLNPQVLQCLTKFSQ 122 Query: 129 RSSRLILILNKIDCVKPERLLEQ--AEIANKLV--------------------------- 159 S IL+LNK+DC+K + +L + A + +V Sbjct: 123 VPS--ILVLNKVDCLKQKSVLLELTAALTEGVVNGKKLNIKQALRSRSSTHCPGPETEGP 180 Query: 160 --------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 + ++ FM+SA + + YL + PW + + ++ Sbjct: 181 NAHSVRNPQRIGWPYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLTSQTPEE 240 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 A REKL +L +E+PY T WEE G ++I+Q + V + S +I++G+ G Sbjct: 241 ICANKIREKLLEYLPEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGL 300 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 I I+ E +++ +I V + L VK+ K Sbjct: 301 LISQIAQEVGRDLMDIFHCDVLIRLSVKLLK 331 >gi|68447074|dbj|BAE04658.1| bex [Staphylococcus haemolyticus JCSC1435] Length = 224 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 115/207 (55%) Query: 92 IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQ 151 +R++ +T+ D + +V+ + E+ +++ + + + L+LNKID V P+ L+ + Sbjct: 1 MRVAKNTLSEIDAIMFMVNVNEEIGRGDEYIMEMLKNVKTPVFLVLNKIDLVHPDALMPR 60 Query: 152 AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEIT 211 E K + + +SA +G D ++ L + LP P Y DQISD P +EI Sbjct: 61 IEQYQKYMNFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVSEII 120 Query: 212 REKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTIS 271 REK+ +EIP++ V ++ ++ D + + IYVER SQK I++GK G+ +K + Sbjct: 121 REKILHLTSEEIPHAIGVNVDRMIKENDERVRVEATIYVERDSQKGIVIGKGGKKLKEVG 180 Query: 272 LEAKKEIAEILEQPVHLILFVKVQKDW 298 A+ +I +L V+L L+VKVQKDW Sbjct: 181 KRARHDIEMLLGSKVYLELWVKVQKDW 207 >gi|15828851|ref|NP_326211.1| GTP-binding protein Era [Mycoplasma pulmonis UAB CTIP] gi|21263604|sp|Q98QI1|ERA_MYCPU RecName: Full=GTPase Era gi|14089794|emb|CAC13553.1| GTP-BINDING PROTEIN ERA [Mycoplasma pulmonis] Length = 293 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 150/283 (53%), Gaps = 8/283 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 ++G N GKSTL+N + ++IV+ K Q TR + GI S+ + Q++F DTPGI+ K Sbjct: 7 TIIGRPNVGKSTLLNNILEYDLAIVSSKPQATRDQIMGIYSDDDYQLIFTDTPGIYKTKT 66 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 + + + S+ ++K D+V + ++ E+ + ++I ++++ LI KID Sbjct: 67 KFGENLNAQSYESLKDIDLVIFLSPANEEIGPGDEFICEKIKNFTNKIALI-TKIDLENS 125 Query: 146 ERLL-EQAEIANKLVFIEKTFMVSATKGHGC-DDVLNYLCSTLPLAPWVYSADQISDLPM 203 E +L ++AE L F E F +S +K HG ++N + + D I++ Sbjct: 126 EEVLKKKAEKLKSLGFKE-IFAIS-SKDHGSIKKLINEIKKYSYEGERQFDEDMITEKSE 183 Query: 204 FHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKDGSIL-IRQVIYVERPSQKKIML 260 E RE L +E+P+S V + + EE+++ +++ I IYV + SQK I++ Sbjct: 184 KFIAKESIREACIDLLEQELPHSILVEIDSFSEEEREEKNLVEIHSTIYVNKESQKGILI 243 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 GK G IK I + A+K+I L V L L +KV+K+W + K Sbjct: 244 GKGGSKIKKIGISARKKIQRKLGVNVKLFLKIKVKKNWVNQEK 286 >gi|149724116|ref|XP_001504234.1| PREDICTED: similar to Era-like 1 [Equus caballus] Length = 437 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 54/335 (16%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HHPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCRALGVITEKEAQ 162 Query: 72 IVFLDTPGIFNA-KDSYHKLMIRL---SWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPG+ + K H L + L W +++ AD+V ++VD + +L + Sbjct: 163 VILLDTPGLISPIKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQVLQC 222 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLV--------------------- 159 L + ++ S IL++NK+DC+K + +L + A + + +V Sbjct: 223 LTQFSQVPS--ILVMNKVDCLKQKSVLLELTAALTDGVVNGKKLKMRQAFSSQLGTHCPS 280 Query: 160 --------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ++ FM+SA + YL + PW + + ++ Sbjct: 281 PAAKGPNTQSVGRPQRTGWPHFQEIFMLSALSQEDVKTLKQYLLAQARPGPWEFHSGVLT 340 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 + REKL HL +E+PY+ T WEE G ++I Q + V + S +I+ Sbjct: 341 SQTPEEICTNMIREKLLEHLPQEVPYNVQQKTVVWEEGPSGELVIVQKLLVPKESHVRIL 400 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 +G G I I+ E +++ I V L L VK+ Sbjct: 401 IGPKGHLISQIAQEVGRDLMNIFLCDVQLRLSVKL 435 >gi|148680960|gb|EDL12907.1| Era (G-protein)-like 1 (E. coli), isoform CRA_a [Mus musculus] Length = 331 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 95/331 (28%), Positives = 159/331 (48%), Gaps = 54/331 (16%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q++ LDT Sbjct: 3 ENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQVILLDT 62 Query: 78 PGIFNA-KDSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 PGI + K H L ++ W++++ AD+V ++VD + L + L + ++ Sbjct: 63 PGIISPVKQKRHHLERSLLEDPWTSMESADLVVVLVDVSDKWTRSRLNPQVLQCLTKFSQ 122 Query: 129 RSSRLILILNKIDCVKPERLLEQ--AEIANKLV--------------------------- 159 S IL+LNK+DC+K + +L + A + +V Sbjct: 123 VPS--ILVLNKVDCLKQKSVLLELTAALTEGVVNGKKLNIKQALRSRSSTHCPGPETEGP 180 Query: 160 --------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 + ++ FM+SA + + YL + PW + + ++ Sbjct: 181 NAHSVRNPQRIGWPYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLTSQTPEE 240 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 A REKL +L +E+PY T WEE G ++I+Q + V + S +I++G+ G Sbjct: 241 ICANKIREKLLEYLPEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGL 300 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 I I+ E +++ +I V + L VK+ K Sbjct: 301 LISQIAQEVGRDLMDIFHCDVLIRLSVKLLK 331 >gi|148377384|ref|YP_001256260.1| GTP-binding protein Era [Mycoplasma agalactiae PG2] gi|226741223|sp|A5IXQ6|ERA_MYCAP RecName: Full=GTPase Era gi|148291430|emb|CAL58815.1| GTP binding protein era [Mycoplasma agalactiae PG2] Length = 290 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 82/278 (29%), Positives = 142/278 (51%), Gaps = 4/278 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N GKS+L+N+ + ++IV++ QTTR + G+ +E Q VF+DTPGI Sbjct: 6 ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTEDGYQFVFVDTPGIHKPL 65 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + ++S++K D V + + ++K +L+ I ++ I +++KID K Sbjct: 66 NLLGESLNKEAFSSLKDIDCVLFLSPVNEDIKSGDKLILERITNAKNK-IAVISKIDLAK 124 Query: 145 -PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 P+ + ++ + + F K VS D ++ L AP Y D I+D M Sbjct: 125 SPDEIAKKIDGLKEYGF-NKIISVSNKNDKSVDSLIEILKEYAYNAPPFYDEDYITDKSM 183 Query: 204 FHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKN 263 E RE L E+P+S V + + E +D I I +IYV++ SQK I++GK Sbjct: 184 RFMAKEYIRESAINLLTDELPHSIAVEVQDFIE-EDDRITINAIIYVKKDSQKGILIGKG 242 Query: 264 GQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 IK I A+ +++ + V L L VKV W +D Sbjct: 243 ASMIKKIGTNARMKMSHQFDTKVTLNLKVKVSNKWIND 280 >gi|167463438|ref|ZP_02328527.1| GTP-binding protein Era [Paenibacillus larvae subsp. larvae BRL-230010] Length = 229 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 112/208 (53%) Query: 91 MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE 150 M++++ ST+ D + +VD + +++++ + +IL+LNKID V PE LL Sbjct: 7 MMKVAHSTLAEVDAILFLVDVAEGIGGGDRFIIEQLKSVQTPVILVLNKIDKVHPEDLLP 66 Query: 151 QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEI 210 +L + VSA +G+ +L + L P Y ADQ++D P AE+ Sbjct: 67 VISTYKELYPFTEIVPVSALQGNNVTTMLEQITKYLEEGPQYYPADQVTDHPEQFVVAEL 126 Query: 211 TREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTI 270 REK+ +EIP+S V E +++G + I VI+VER SQK I++GK G +K I Sbjct: 127 IREKILHLTREEIPHSIAVTIEDIRVEENGVVRISAVIFVERDSQKGIIIGKQGALLKQI 186 Query: 271 SLEAKKEIAEILEQPVHLILFVKVQKDW 298 +A+ +I +L L L+VKV+KDW Sbjct: 187 GQQARHDIEALLGTKTFLELWVKVKKDW 214 >gi|311267971|ref|XP_003131840.1| PREDICTED: GTP-binding protein era homolog [Sus scrofa] Length = 588 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/337 (28%), Positives = 159/337 (47%), Gaps = 54/337 (16%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H+ + +N R V ++GA NAGKSTL N+ +G KV V+ KV TTRS G+++EKE+Q Sbjct: 254 HRPDMPENPRVLRVVILGAPNAGKSTLSNKLLGRKVFPVSKKVHTTRSQALGVITEKEAQ 313 Query: 72 IVFLDTPGIFN-AKDSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPG+ + AK H L ++ W +++ AD+V ++VD + +L + Sbjct: 314 VILLDTPGLISPAKQKRHHLEPSLLEDPWKSMESADLVVVLVDVSDQWTRNQLSPQVLQC 373 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIA--------NKLVF-------------- 160 L + ++ S IL++NK+D +K + +L + A KL Sbjct: 374 LTQFSQVPS--ILVMNKVDRLKQKSVLLELTAALTEGVVNGKKLTVRQALRSQRDARRPG 431 Query: 161 ---------------------IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ++ FM+SA + YL + PW + + ++ Sbjct: 432 PAAKGPDTESVGDPQRTGWPHFQEIFMLSALSQEDVKILKQYLLAQARPGPWEFHSGVLT 491 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 A I REKL +L +E+PY T WEE G ++I Q + V + S +++ Sbjct: 492 SQTPQEICANIVREKLLEYLPQEVPYGVQQKTMMWEEGPSGQLVIEQKLLVPKESHMRLL 551 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 +G G I I+ E +++ +I V L L VK+ K Sbjct: 552 IGPKGHLISQIAQEVGQDLMDIFLCEVQLRLSVKLLK 588 >gi|297700396|ref|XP_002827258.1| PREDICTED: GTP-binding protein era homolog [Pongo abelii] Length = 436 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 158/335 (47%), Gaps = 51/335 (15%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++E E+Q Sbjct: 103 HHPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITENETQ 162 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 I LDTPGI + K H L + L W +++ AD+V ++VD + N LL+ Sbjct: 163 I-LLDTPGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRC 221 Query: 126 IAKRSS-RLILILNKIDCVKPERLLEQ--AEIANKLV----------------------- 159 + K S +L++NK+DC+K + +L + A + +V Sbjct: 222 LTKFSQIPSVLVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPA 281 Query: 160 ------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 ++ FM+SA + YL + PW Y + ++ Sbjct: 282 VKDPNTQSVGNPQRTGWPHFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQ 341 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 A I REKL HL +E+PY+ T WEE G ++I+Q + V + S K+++G Sbjct: 342 TPEEICANIIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYMKLLIG 401 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 G I I+ EA +++ +I V + L VK+ K Sbjct: 402 PKGHVISQIAQEAGRDLMDIFLCDVDIHLSVKLLK 436 >gi|283956075|ref|ZP_06373562.1| GTP-binding protein ERA-like protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792395|gb|EFC31177.1| GTP-binding protein ERA-like protein [Campylobacter jejuni subsp. jejuni 1336] Length = 291 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 156/285 (54%), Gaps = 11/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + ++L+++ + +++ D++ V D+ ++ + N L ++ I+ L Sbjct: 62 HESGARLNQLLVQSAIKSMRDCDMILFVASVFDNTKDYE-NFLSLSPQVPH-----IIAL 115 Query: 138 NKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D LL++ +E A + + S+ K + D+L+ + L + Y + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSEYFKAIIPYSSKKKNYKKDLLDEIVKYLDEHEYFYDPE 175 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 +S + E ++ +L E+PYSS V+ + ++ + IL +I + S K Sbjct: 176 FLSASSEKELYRDFILESIYENLSDELPYSSEVLIHRTKDTPNLLILEANII-TDTNSHK 234 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 +++GK G +K I +A+ +I+++ ++ V L LFV V+K+W D Sbjct: 235 GMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQKD 279 >gi|71893508|ref|YP_278954.1| GTP-binding protein Era [Mycoplasma hyopneumoniae J] gi|71851635|gb|AAZ44243.1| GTP-binding protein [Mycoplasma hyopneumoniae J] Length = 293 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 143/291 (49%), Gaps = 7/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ VA+VG N GKS+L+N V VSIV+ K QTTR + I ++ QI+F+DT Sbjct: 2 DIKKTCFVAIVGLPNVGKSSLINSLVEFPVSIVSLKSQTTRDAINAIYNKDNLQILFVDT 61 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG ++ + ST++ D+V + + + N L K+IAK ++++LI Sbjct: 62 PGFHMRINNLSNSLNYAINSTLEGIDLVLFLHPVDKPVDQNTRFLAKKIAKNMNKIVLI- 120 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA---PWVYS 194 K D + + E + + EK S + D +N L A YS Sbjct: 121 TKTDLENDKLNFKIQEKNFRELNFEKILPFST---NSEDLRINLLLEIEKFAYPSEHFYS 177 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 ++D F EI R+++ L+L EIP+ S V+ + ++E + + I IYV + S Sbjct: 178 NLDVTDQSSRFFAKEIIRKQILLNLEDEIPHQSAVLIDNFDESDNRFVKIEATIYVGKKS 237 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G + I +A++E+ EI + V L V + K W ++PK Sbjct: 238 HLPIIIGKGGSVLGKIGTDARRELEEIFGKKVVLKNRVSIAKKWFNNPKMI 288 >gi|54020101|ref|YP_115739.1| GTP-binding protein Era [Mycoplasma hyopneumoniae 232] gi|72080495|ref|YP_287553.1| GTP-binding protein Era [Mycoplasma hyopneumoniae 7448] gi|53987274|gb|AAV27475.1| GTP-binding protein era homolog [Mycoplasma hyopneumoniae 232] gi|71913619|gb|AAZ53530.1| GTP-binding protein [Mycoplasma hyopneumoniae 7448] Length = 293 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 143/291 (49%), Gaps = 7/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ VA+VG N GKS+L+N V VSIV+ K QTTR + I ++ QI+F+DT Sbjct: 2 DIKKTCFVAIVGLPNVGKSSLINSLVEFPVSIVSLKSQTTRDAINAIYNKDNLQILFVDT 61 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG ++ + ST++ D+V + + + N L K+IAK ++++LI Sbjct: 62 PGFHMRINNLSNSLNYAINSTLEGIDLVLFLHPVDKPVDQNTRFLAKKIAKNMNKIVLI- 120 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA---PWVYS 194 K D + + E + + EK S + D +N L A YS Sbjct: 121 TKTDLENDKLNFKIQEKNFRELNFEKILPFST---NSEDLRINLLLEIEKFAYPSDHFYS 177 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 ++D F EI R+++ L+L EIP+ S V+ + ++E + + I IYV + S Sbjct: 178 NLDVTDQSSRFFAKEIIRKQILLNLEDEIPHQSAVLIDNFDESDNRFVKIEATIYVGKKS 237 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G + I +A++E+ EI + V L V + K W ++PK Sbjct: 238 HLPIIIGKGGSVLGKIGTDARRELEEIFGKKVVLKNRVSIAKKWFNNPKMI 288 >gi|297272246|ref|XP_001107234.2| PREDICTED: GTP-binding protein era homolog [Macaca mulatta] Length = 516 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 158/335 (47%), Gaps = 51/335 (15%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 183 HHPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQ 242 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 I+ LDTPGI + K H L + L W +++ AD+V ++VD + N LL+ Sbjct: 243 IL-LDTPGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRC 301 Query: 126 IAKRSS-RLILILNKIDCVKPERLLEQ--AEIANKLV----------------------- 159 + K S +L++NKIDC+K + +L + A + +V Sbjct: 302 LTKFSQIPSVLVMNKIDCLKRKSVLLELTAALTEGVVNGKKLEMRQAFHSQPGTRCPSPA 361 Query: 160 ------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 ++ FM+SA + YL + PW Y + ++ Sbjct: 362 VKDPHTLSVGNPQRIGWPHFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQ 421 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLG 261 + REKL HL +E+PY+ T WEE G ++I+Q + V + S K+++G Sbjct: 422 TPEEICTNVIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYMKLLIG 481 Query: 262 KNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 G I I+ EA +++ I V + L VK+ K Sbjct: 482 PKGHVISQIAQEAGRDLMNIFLCDVDIHLSVKLLK 516 >gi|14211572|dbj|BAB56113.1| conserved ERA-like GTPase [Mus musculus] Length = 437 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/337 (28%), Positives = 160/337 (47%), Gaps = 54/337 (16%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR +++EKE+Q Sbjct: 103 HTPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALWVITEKETQ 162 Query: 72 IVFLDTPGIFNA-KDSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPGI + K H L ++ W++++ AD+V ++VD + L + Sbjct: 163 VILLDTPGIISPVKQKRHHLERSLLEDPWTSMESADLVVVLVDVSDKWTRSRLNPQVLQC 222 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLV--------------------- 159 L + ++ S IL+LNK+DC+K + +L + A + +V Sbjct: 223 LTKFSQVPS--ILVLNKVDCLKQKSVLLELTAALTEGVVNGKKLNIKQALRSRSSTHCPG 280 Query: 160 --------------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 + ++ FM+SA + + YL + PW + + ++ Sbjct: 281 PETEGPNAHSVRNPQRIGWPYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLT 340 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIM 259 A REKL +L +E+PY T WEE G ++I+Q + V + S +I+ Sbjct: 341 SQTPEEICANKIREKLLEYLPEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRIL 400 Query: 260 LGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 +G+ G I I+ E +++ +I V + L VK+ K Sbjct: 401 IGQKGLLISQIAQEVGRDLMDIFHCDVLIRLSVKLLK 437 >gi|87202933|gb|ABD30743.1| GTP-binding protein Era [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 224 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 115/207 (55%) Query: 92 IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQ 151 ++++ +T+ D + +V+++ E+ +++ + + + L+LNKID V P+ L+ + Sbjct: 1 MKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVKTPVFLVLNKIDLVHPDELMPK 60 Query: 152 AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEIT 211 E + + +SA +G D ++ L + LP P Y DQISD P EI Sbjct: 61 IEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEII 120 Query: 212 REKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTIS 271 REK+ +EIP++ V ++ ++ + + I IYVER SQK I++GK G+ +K + Sbjct: 121 REKILHLTSEEIPHAIGVNVDRMVKESEDRVHIEATIYVERGSQKGIVIGKGGKKLKEVG 180 Query: 272 LEAKKEIAEILEQPVHLILFVKVQKDW 298 A+++I +L V+L L+VKVQ+DW Sbjct: 181 KRARRDIEMLLGSKVYLELWVKVQRDW 207 >gi|284053849|ref|ZP_06384059.1| GTP-binding protein Era [Arthrospira platensis str. Paraca] Length = 228 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 114/214 (53%), Gaps = 3/214 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + +SG V ++G N GKSTL+N+ VG K++I + QTTR+ +RGI++ +QI+F+DT Sbjct: 14 EGYKSGFVGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVDT 73 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI K++++ + I D++ VVD+ ++ + +IL L Sbjct: 74 PGIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDASVMSGGGDRYIVDLLTHTKFPVILGL 133 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NK D ++P++ + + K MV SA G G + + N L ++L P+ Y Sbjct: 134 NKWD-LQPDQYEAIDQSYQQFAEAHKWQMVKFSAVTGAGVETLQNLLINSLDPGPYYYPP 192 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 D ++D P E+ RE++ LH +E+P+S + Sbjct: 193 DLVTDQPERFIMGELIREQILLHTREEVPHSVAI 226 >gi|315930710|gb|EFV09724.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 305] Length = 288 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 152/289 (52%), Gaps = 19/289 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++L+++ + +I D++ V DS ++ + N L ++ I+ L Sbjct: 62 HESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYE-NFLSLNPQVPH-----IIAL 115 Query: 138 NKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPLAPWV 192 NK+D LL E A+ + I + G D+++ YL + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDEIVKYLDE----HEYF 171 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y + +S + E ++ +L E+PYSS V+ + ++ + IL +I + Sbjct: 172 YDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPNLLILEANII-TDT 230 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K +++GK G +K I +A+ +I+++ ++ V L LFV V+K+W D Sbjct: 231 NSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQKD 279 >gi|86151835|ref|ZP_01070049.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 260.94] gi|86153468|ref|ZP_01071672.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613147|ref|YP_001000361.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81-176] gi|189037258|sp|A1VZ20|ERA_CAMJJ RecName: Full=GTPase Era gi|85841464|gb|EAQ58712.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 260.94] gi|85843194|gb|EAQ60405.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249445|gb|EAQ72405.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81-176] Length = 291 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 152/289 (52%), Gaps = 19/289 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++L+++ + +I D++ V DS ++ + N L ++ I+ L Sbjct: 62 HESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYE-NFLSLNPQVPH-----IIAL 115 Query: 138 NKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPLAPWV 192 NK+D LL E A+ + I + G D+++ YL + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDEIVKYLDE----HEYF 171 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y + +S + E ++ +L E+PYSS V+ + ++ + IL +I + Sbjct: 172 YDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPNLLILEANII-TDT 230 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K +++GK G +K I +A+ +I+++ ++ V L LFV V+K+W D Sbjct: 231 NSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQKD 279 >gi|221504855|gb|EEE30520.1| GTP-binding protein erg, putative [Toxoplasma gondii VEG] Length = 413 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 134/301 (44%), Gaps = 61/301 (20%) Query: 22 SGC-----VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 SGC +AL+G NAGKS+L+N +G K+S V+ KV TTRS +RGI+++ ++Q+VFLD Sbjct: 72 SGCAKSLRIALIGPPNAGKSSLLNALLGQKLSAVSPKVNTTRSEIRGIITQDDTQLVFLD 131 Query: 77 TPGIFNA--KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK------ 128 PGI + + + ++ +W + AD+ LV+D+ + + +++ IA Sbjct: 132 VPGIVESHRNKKFCRELVSTAWRGFEDADVALLVIDAVKRPTQEVFNIVTTIAPKPSLIR 191 Query: 129 -----------------------------------------------RSSRLILILNKID 141 R + L +NK+D Sbjct: 192 RAFDSTLATTPSPITQTEVGDAVGLPAHRQGKDLDEVDDGKQIDVNARGIPVFLCINKVD 251 Query: 142 CVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 P+ + +A+ EK F +SA G +L++L S + W Y + + Sbjct: 252 LASHPKWVYARAKEFQAHGHFEKIFHLSAKNSRGLQPLLDHLVSRAKRSVWAYPPEMKTT 311 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 LP AE+ + LF +K++PY T W + DGS++I Q + V+ K++ Sbjct: 312 LPKVQQVAELIKTYLFCWFNKDVPYRIEQQTIGWTPRLDGSLIIEQELLVKDDKVAKMVC 371 Query: 261 G 261 G Sbjct: 372 G 372 >gi|221484671|gb|EEE22965.1| GTP-binding protein era, putative [Toxoplasma gondii GT1] Length = 413 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 134/301 (44%), Gaps = 61/301 (20%) Query: 22 SGC-----VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 SGC +AL+G NAGKS+L+N +G K+S V+ KV TTRS +RGI+++ ++Q+VFLD Sbjct: 72 SGCAKSLRIALIGPPNAGKSSLLNALLGQKLSAVSPKVNTTRSEIRGIITQDDTQLVFLD 131 Query: 77 TPGIFNA--KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK------ 128 PGI + + + ++ +W + AD+ LV+D+ + + +++ IA Sbjct: 132 VPGIVESHRNKKFCRELVSTAWRGFEDADVALLVIDAVKRPTQEVFNIVTTIAPKPSLIR 191 Query: 129 -----------------------------------------------RSSRLILILNKID 141 R + L +NK+D Sbjct: 192 RAFDSTLATTPSPITQTEVGDAVGLPAHRQGKDLDEVDEGKQIDVNARGIPVFLCINKVD 251 Query: 142 CVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 P+ + +A+ EK F +SA G +L++L S + W Y + + Sbjct: 252 LASHPKWVYARAKEFQAHGHFEKIFHLSAKNSRGLQPLLDHLVSRAKRSVWAYPPEMKTT 311 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 LP AE+ + LF +K++PY T W + DGS++I Q + V+ K++ Sbjct: 312 LPKVQQVAELIKTYLFCWFNKDVPYRIEQQTIGWTPRLDGSLIIEQELLVKDDKVAKMVC 371 Query: 261 G 261 G Sbjct: 372 G 372 >gi|312601109|gb|ADQ90364.1| GTP-binding protein [Mycoplasma hyopneumoniae 168] Length = 293 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 143/291 (49%), Gaps = 7/291 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ VA+VG N GKS+L+N V VSIV+ K QTTR + I ++ QI+F+DT Sbjct: 2 DIKKTCFVAIVGLPNVGKSSLINSLVEFPVSIVSLKSQTTRDAINAIYNKDNLQILFVDT 61 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PG ++ + ST++ D+V + + + N L K+IA+ ++++LI Sbjct: 62 PGFHMRINNLSNSLNYAINSTLEGIDLVLFLHPVDKPVDQNTKFLAKKIARNMNKIVLI- 120 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA---PWVYS 194 K D + + E + + EK S + D +N L A YS Sbjct: 121 TKTDLENDKLNFKIQEKNFRELNFEKILPFST---NSEDLRINLLLEIEKFAYPSDHFYS 177 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 ++D F EI R+++ L+L EIP+ S V+ + ++E + + I IYV + S Sbjct: 178 NLDVTDQSSRFFAKEIIRKQILLNLEDEIPHQSAVLIDNFDESDNRFVKIEATIYVGKKS 237 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 I++GK G + I +A++E+ EI + V L V + K W ++PK Sbjct: 238 HLPIIIGKGGSVLGKIGTDARRELEEIFGKKVVLKNRVSIAKKWFNNPKMI 288 >gi|237839985|ref|XP_002369290.1| hypothetical protein TGME49_086640 [Toxoplasma gondii ME49] gi|211966954|gb|EEB02150.1| hypothetical protein TGME49_086640 [Toxoplasma gondii ME49] Length = 413 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 134/301 (44%), Gaps = 61/301 (20%) Query: 22 SGC-----VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 SGC +AL+G NAGKS+L+N +G K+S V+ KV TTRS +RGI+++ ++Q+VFLD Sbjct: 72 SGCAKSLRIALIGPPNAGKSSLLNALLGQKLSAVSPKVNTTRSEIRGIITQDDTQLVFLD 131 Query: 77 TPGIFNA--KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK------ 128 PGI + + + ++ +W + AD+ LV+D+ + + +++ IA Sbjct: 132 VPGIVESHRNKKFCRELVSTAWRGFEDADVALLVIDAVKRPTQEVFNIVTTIAPKPSLIR 191 Query: 129 -----------------------------------------------RSSRLILILNKID 141 R + L +NK+D Sbjct: 192 RAFDSTLATTPSPITQTEVGDAVGLPAHRQGKDLDEVDDGKQIDVNARGIPVFLCINKVD 251 Query: 142 CVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 P+ + +A+ EK F +SA G +L++L S + W Y + + Sbjct: 252 LASHPKWVYARAKEFQAHGHFEKIFHLSAKNSRGLQPLLDHLVSRAKRSVWAYPPEMKTT 311 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 LP AE+ + LF +K++PY T W + DGS++I Q + V+ K++ Sbjct: 312 LPKVQQVAELIKTYLFCWFNKDVPYRIEQQTIGWTPRFDGSLIIEQELLVKDDKVAKMVC 371 Query: 261 G 261 G Sbjct: 372 G 372 >gi|88597072|ref|ZP_01100308.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 84-25] gi|88190761|gb|EAQ94734.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 84-25] Length = 291 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 153/289 (52%), Gaps = 19/289 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++L+++ + ++ D++ V DS ++ + N L ++ I+ L Sbjct: 62 HESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYE-NFLSLNPQVPH-----IITL 115 Query: 138 NKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPLAPWV 192 NK+D LL E A+ + I + G D+++ YL + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDEIVKYLDE----HEYF 171 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y + +S + E ++ +L E+PYSS V+ + ++ + IL +I + Sbjct: 172 YDPEFLSASSEKEIYRDFILESIYENLSDELPYSSEVLIHRTKDTPNLLILEANII-TDT 230 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K +++GK G+ +K I +A+ +I+++ ++ V L LFV V+K+W D Sbjct: 231 NSHKGMLIGKEGETLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQKD 279 >gi|284925919|gb|ADC28271.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni IA3902] Length = 291 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 19/289 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++L+++ + +I D++ V DS ++ + N L ++ I+ L Sbjct: 62 HESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYE-NFLSLNPQVPH-----IIAL 115 Query: 138 NKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPLAPWV 192 NK+D LL E A+ + + + G D+++ YL + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSQHFKAVIPYSSKKKSYKKGLLDEIVKYLDE----HEYF 171 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y + +S + E ++ +L E+PYSS V+ + ++ + IL +I + Sbjct: 172 YDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPNLLILEANII-TDT 230 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K +++GK G +K I +A+ +I+++ ++ V L LFV V+K+W D Sbjct: 231 NSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQKD 279 >gi|57236971|ref|YP_178772.1| GTP-binding protein Era [Campylobacter jejuni RM1221] gi|81353813|sp|Q5HVB3|ERA_CAMJR RecName: Full=GTPase Era gi|57165775|gb|AAW34554.1| GTP-binding protein Era [Campylobacter jejuni RM1221] gi|315058076|gb|ADT72405.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni S3] Length = 291 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 153/289 (52%), Gaps = 19/289 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++L+++ + ++ D++ V DS ++ + N L ++ I+ L Sbjct: 62 HESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYE-NFLSLNPQVPH-----IIAL 115 Query: 138 NKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPLAPWV 192 NK+D LL E A+ + I + G D+++ YL + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDEIVKYLDE----HEYF 171 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y+ + +S + E ++ +L E+PYSS V+ + ++ + IL +I + Sbjct: 172 YNPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPNLLILEANII-TDT 230 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K +++GK G +K I +A+ +I+++ ++ V L LFV V+K+W D Sbjct: 231 NSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQKD 279 >gi|78777575|ref|YP_393890.1| GTP-binding protein Era [Sulfurimonas denitrificans DSM 1251] gi|78498115|gb|ABB44655.1| GTP-binding protein Era [Sulfurimonas denitrificans DSM 1251] Length = 300 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 152/283 (53%), Gaps = 4/283 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++G V+L+G NAGKSTL+N +G +++V+ K TR IV ++QI+F+DTPG Sbjct: 10 TKAGFVSLIGRPNAGKSTLMNSLLGENIAMVSQKANATRKRSNAIVMHNDTQIIFVDTPG 69 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + ++ M+ + + D++ + ++ N LK + + I++L+K Sbjct: 70 LHEREKVLNQFMLDEALKAMGDCDLIVYLAPITDSIE-NYEKFLK-LNNSKVKHIIVLSK 127 Query: 140 IDCVKPERLLEQAEIANKLV-FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ID V ++L ++ N+ E ++ K G D+L + LP +P+++ + + Sbjct: 128 IDQVSQDKLFKKILQYNQFSDNFEALIPMAIPKKIGHKDLLETISKMLPASPFLFDPEDL 187 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 + + A RE +F ++ EIPY S V+ EK E+K+ +I +I VE+ SQK I Sbjct: 188 TSELVRDIYAGFIREGVFQNVSDEIPYESDVLIEKIYEEKNVDRIIATII-VEKESQKGI 246 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 ++G+ G+ IK I ++++I + + +L L V V+K W D Sbjct: 247 IIGRGGEGIKRIGKYSREKIEMLSGKKAYLDLQVVVKKGWSKD 289 >gi|153951129|ref|YP_001398383.1| GTP-binding protein Era [Campylobacter jejuni subsp. doylei 269.97] gi|189037257|sp|A7H4F3|ERA_CAMJD RecName: Full=GTPase Era gi|152938575|gb|ABS43316.1| GTP-binding protein Era [Campylobacter jejuni subsp. doylei 269.97] Length = 291 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 155/285 (54%), Gaps = 11/285 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVIHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + ++++L+++ + +++ D++ V DS ++ + N L +++ I+ L Sbjct: 62 HESGATFNQLLVQSAIKSMEDCDVILFVASVFDSTKDYE-NFLSLNPQVSH-----IIAL 115 Query: 138 NKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK+D LL++ +E A + S+ K +L+ + L + Y + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSEHFKAILPYSSKKKSYKKGLLDEIVKCLNEHEYFYDPE 175 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 +S + E ++ +L E+PYSS V+ + ++ + IL +I + S K Sbjct: 176 FLSVNSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPNLLILEANII-TDTNSHK 234 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 + +GK G +K I +A+ +I+++ ++ V L LFV V+K+W D Sbjct: 235 GMFIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQKD 279 >gi|148926637|ref|ZP_01810318.1| GTP-binding protein ERA like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845156|gb|EDK22251.1| GTP-binding protein ERA like protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 291 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 19/289 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++L+++ + ++ D++ V DS ++ + N L ++ I+ L Sbjct: 62 HESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYE-NFLSLNPQVPH-----IIAL 115 Query: 138 NKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPLAPWV 192 NK+D LL E A+ + I + G D+++ YL + Sbjct: 116 NKVDLTDNATLLKKLREYAKFSQHFKAIIPYSSKKKSYKKGLLDEIVKYLDE----HEYF 171 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y + +S + E ++ +L E+PYSS V+ + ++ + IL +I + Sbjct: 172 YDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPNLLILEANII-TDT 230 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K +++GK G +K I +A+ +I+++ ++ V L LFV V+K+W D Sbjct: 231 NSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQKD 279 >gi|15616868|ref|NP_240081.1| GTP-binding protein Era [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386764|sp|P57345|ERA_BUCAI RecName: Full=GTPase Era gi|25294115|pir||G84959 GTP-binding protein era [imported] - Buchnera sp. (strain APS) gi|10038932|dbj|BAB12967.1| GTP-binding protein era [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 283 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 150/276 (54%), Gaps = 9/276 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G V +VG N GKSTL+N +G K+SIV+ K TT+S + GI +E Q +++DTPG+ F Sbjct: 9 GHVIIVGKANVGKSTLLNNIIGKKISIVSRKKNTTQSNITGIKTEDNYQSIYIDTPGVVF 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 + ++ K + T + A ++ ++D + IHD +L EI K +++I+NK Sbjct: 69 DKNNNQMKHHKNNFYQTTQIATLIIFIID---RIDWTIHDEIILNEIKKTKIPILIIINK 125 Query: 140 IDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID + + +L + K+ FIE +SA K + N + S LP +Y Sbjct: 126 IDKISNKIILLPFINFLKKKIDFIE-ILPISAKKISNLILLKNIIKSYLPENCHIYPECY 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+ F +EI RE+L L L E+P V E +++K+ ++ I+ +I+V+ QK Sbjct: 185 ITTNSDFFTVSEIIREQLILFLGDELPSIIKVEIESFKKKEKIALYIKAIIWVKNVRQKS 244 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 I++G NG+ IK IS+ ++ I + HL+L+VK Sbjct: 245 IVIGHNGEKIKKISMISRNNIEKKFYIKTHLVLWVK 280 >gi|86149793|ref|ZP_01068022.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni CF93-6] gi|218562306|ref|YP_002344085.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|13959362|sp|Q9PHL1|ERA_CAMJE RecName: Full=GTPase Era gi|85839611|gb|EAQ56871.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni CF93-6] gi|112360012|emb|CAL34802.1| GTP-binding protein Era homolog [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315926778|gb|EFV06152.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 291 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 19/289 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++L+++ + ++ D++ V DS ++ + N L ++ I+ L Sbjct: 62 HESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYE-NFLSLNPQVPH-----IITL 115 Query: 138 NKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPLAPWV 192 NK+D LL E A+ + I + G D+++ YL + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDEIVKYLDE----HEYF 171 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y + +S + E ++ +L E+PYSS V+ + ++ + IL +I + Sbjct: 172 YDPEFLSASSEKEIYRDFILESIYENLSDELPYSSEVLIHRTKDTPNLLILEANII-TDT 230 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K +++GK G +K I +A+ +I+++ ++ V L LFV V+K+W D Sbjct: 231 NSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQKD 279 >gi|157414937|ref|YP_001482193.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81116] gi|189037256|sp|A8FL79|ERA_CAMJ8 RecName: Full=GTPase Era gi|157385901|gb|ABV52216.1| GTP-binding protein ERA-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747576|gb|ADN90846.1| GTP-binding protein era-like protein [Campylobacter jejuni subsp. jejuni M1] gi|315931858|gb|EFV10813.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 327] Length = 291 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 19/289 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++L+++ + ++ D++ V DS ++ + N L ++ I+ L Sbjct: 62 HESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYE-NFLSLNPQVPH-----IIAL 115 Query: 138 NKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPLAPWV 192 NK+D LL E A+ + I + G D+++ YL + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDEIVKYLDK----HEYF 171 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y + +S + E ++ +L E+PYSS V+ + ++ + IL +I + Sbjct: 172 YDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLIHRTKDTPNLLILEANII-TDT 230 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S K +++GK G +K I +A+ +I+++ ++ V L LFV V+K+W D Sbjct: 231 NSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQKD 279 >gi|224012853|ref|XP_002295079.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969518|gb|EED87859.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 412 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 138/301 (45%), Gaps = 32/301 (10%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R V ++G N GKSTL+N + ++I T + QTTR + G+++ +Q+ DTPGI Sbjct: 107 RCALVTILGKPNMGKSTLLNSLLSDNLAIATSRPQTTRHAILGVMTSDHNQLCLTDTPGI 166 Query: 81 FNAKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + K +Y M+ + +K AD+ +V D D +K I + +I+ +N Sbjct: 167 ID-KTAYKLQDGMMDVVKGAVKSADLFLVVTDEEDPYLGIGEDTVKMIKQMEKPVIVCVN 225 Query: 139 KIDCVKPERL--------LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 K+D ++ L I + F + T D LP+ P Sbjct: 226 KVDLASVDKSSVYVNTPPLAVQTIGKWRALLPNAFAIIPTCAANVD--------LLPIGP 277 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-------GS-- 241 +Y D +D +E+ RE LF L KE+PY V E ++E K GS Sbjct: 278 PLYHPDFFTDRTDRFCASELIRETLFETLGKELPYCCEVRVETFDESKRYLDEDSVGSGK 337 Query: 242 ----ILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKD 297 I I I VER SQK I++GK GQ IK + + A+K++ + + L L VKV K+ Sbjct: 338 NKSMIRIGATILVERDSQKGIVVGKGGQQIKDLGMNARKKLQVFFDTKIFLDLRVKVDKN 397 Query: 298 W 298 W Sbjct: 398 W 398 >gi|219682180|ref|YP_002468564.1| GTP-binding protein Era [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254783289|sp|B8D7F4|ERA_BUCAT RecName: Full=GTPase Era gi|219621913|gb|ACL30069.1| GTP-binding protein Era [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085995|gb|ADP66077.1| GTP-binding protein Era [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087151|gb|ADP67231.1| GTP-binding protein Era [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087685|gb|ADP67764.1| GTP-binding protein Era [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 283 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 150/276 (54%), Gaps = 9/276 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IF 81 G V +VG N GKSTL+N +G K+SIV+ K TT+S + GI +E Q +++DTPG +F Sbjct: 9 GHVIIVGKANVGKSTLLNNIIGKKISIVSRKKNTTQSNITGIKTEDNYQSIYIDTPGVVF 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 + ++ K + T + A ++ ++D + IHD +L EI K +++I+NK Sbjct: 69 DKNNNQMKHHKNNFYQTTQIATLIIFIID---RIDWTIHDEIILNEIKKTKIPILIIINK 125 Query: 140 IDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID + + +L + K+ FIE +SA K + N + S LP +Y Sbjct: 126 IDKISNKIILLPFINFLKKKIDFIE-ILPISAKKISNLILLKNIIKSYLPENCHIYPECY 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++ F +EI RE+L L L E+P V E +++K+ ++ I+ +I+V+ QK Sbjct: 185 VTTNSDFFTVSEIIREQLILFLGDELPSIIKVEIESFKKKEKIALYIKAIIWVKNVRQKS 244 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 I++G NG+ IK IS+ ++ I + HL+L+VK Sbjct: 245 IVIGHNGEKIKKISMISRNNIEKKFYIKTHLVLWVK 280 >gi|322790512|gb|EFZ15377.1| hypothetical protein SINV_01619 [Solenopsis invicta] Length = 337 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 147/294 (50%), Gaps = 23/294 (7%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 ++ +S +A +GA N GKSTL+N+ + V V+ KV TT + GI E ++Q++F+DT Sbjct: 49 EDQKSLKIAFLGAPNVGKSTLINQLIKRSVCPVSCKVHTTETKAHGIYVEGDTQLIFMDT 108 Query: 78 PGIFNAKDSYHKLMIRLSW-----STIKHADIVCLVVD-----SHRELKVNIHDLLKEIA 127 PG+ + K+ K + S+ +++ ADIV +V D + ++ N+ +LL E Sbjct: 109 PGMVSKKEC-EKFKLAKSFKADPKTSLHTADIVGIVQDADNIYTRHKIDPNLLELLTEDI 167 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKGHGCDDVLNY 181 K +ILI+NK+D +K + +L + N L +K+ FM+SA G G +D+ +Y Sbjct: 168 KNKIPIILIINKVDRLKKKEIL--LDFVNTLTKSKKSPSFYDIFMISALTGDGVNDLRSY 225 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS 241 L T W Y D + R KL L EIPY V E ++ D S Sbjct: 226 LLDTAKPRAWEYEGHVYVDNTCEDIMRQTVRAKLLDILPNEIPYRLKVKLEHFDPAPDDS 285 Query: 242 ILIRQVIYVERPSQKKIMLGKNGQN--IKTISLEAKKEIAEILEQPVHLILFVK 293 I+ +I V P+++ L G N I I++ A++E+ V L L V+ Sbjct: 286 --IKALISVTCPNKRIARLLTRGSNNRIGQIAVMAEEELRHAFRTSVRLKLVVQ 337 >gi|300741536|ref|ZP_07071557.1| GTP-binding protein Era [Rothia dentocariosa M567] gi|311113629|ref|YP_003984851.1| GTP-binding protein Era [Rothia dentocariosa ATCC 17931] gi|300380721|gb|EFJ77283.1| GTP-binding protein Era [Rothia dentocariosa M567] gi|310945123|gb|ADP41417.1| GTP-binding protein Era [Rothia dentocariosa ATCC 17931] Length = 372 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/349 (26%), Positives = 157/349 (44%), Gaps = 65/349 (18%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+G V+LVG NAGKSTL N VG KV+I + + QTTR +RGIV + Q++ +DTPGI Sbjct: 18 RAGFVSLVGRPNAGKSTLTNALVGQKVAITSSRPQTTRHTIRGIVHRDDYQLILVDTPGI 77 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + + L T+ D++ + ++ ++ + ++ S++ ++ I+ K Sbjct: 78 HRPRTLLGERLNDLVAGTLSQVDVLGFCIPANEKIGPGDRYIASQLVASSNKPVVAIVTK 137 Query: 140 IDCVKPERLLEQ--------------------------------AEIANKLVFIEKTFMV 167 D V ++L EQ ++ NK + K Sbjct: 138 SDTVGNDQLSEQLIAVQALGEEVMSAERADRARRATHRENRVSRSKKDNKNIPFAKGSGP 197 Query: 168 SATKGHGCD------DVLNYLCSTLPL-APWVYSADQISDL--------PMFHFTAEIT- 211 +A + G + D +P+ A + D ++D+ P + E+T Sbjct: 198 AAQRRTGKNYEPTVHDGQGGWADIIPVSAVQHFQVDAVADVLASYMPVSPPLYPEGELTD 257 Query: 212 -----------REKLFLHLHKEIPYSSCVVTEKWE----EKKDGSILIRQV-IYVERPSQ 255 RE +E+P+S V E+ KD +L V ++VER SQ Sbjct: 258 EPEATMIAEFVREAALEGAREELPHSIAVTVEEMNFREGRSKDNPLLDVHVNLFVERESQ 317 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 K I++GK G +++ I +A+++I +L V+L + VKV K+W DP+ Sbjct: 318 KYIIIGKGGSHLRKIGTQAREQIEAMLGTRVYLNIHVKVAKEWQSDPRA 366 >gi|219681623|ref|YP_002468009.1| GTP-binding protein Era [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471311|ref|ZP_05635310.1| GTP-binding protein Era [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254783288|sp|B8D950|ERA_BUCA5 RecName: Full=GTPase Era gi|219624466|gb|ACL30621.1| GTP-binding protein Era [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 283 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 150/276 (54%), Gaps = 9/276 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IF 81 G V +VG N GKSTL+N +G K+SIV+ K TT+S + GI +E Q +++DTPG +F Sbjct: 9 GHVIIVGKANVGKSTLLNNIIGKKISIVSRKKNTTQSNITGIKTEDNYQSIYIDTPGVVF 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 + ++ K + T + A ++ ++D + IHD +L EI K +++I+NK Sbjct: 69 DKNNNQMKHHKNNFYQTTQIATLIIFMID---RIDWTIHDEIILNEIKKTKIPILIIINK 125 Query: 140 IDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID + + +L + K+ FIE +SA K + N + S LP +Y Sbjct: 126 IDKISNKIILLPFINFLKKKIDFIE-ILPISAKKISNLILLKNIIKSYLPENCHIYPECY 184 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++ F +EI RE+L L L E+P V E +++K+ ++ I+ +I+V+ QK Sbjct: 185 VTTNSDFFTVSEIIREQLILFLGDELPSIIKVEIESFKKKEKIALYIKAIIWVKNVRQKS 244 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 I++G NG+ IK IS+ ++ I + HL+L+VK Sbjct: 245 IVIGHNGEKIKKISMISRNNIEKKFYIKTHLVLWVK 280 >gi|76363849|sp|P0C0C0|ERA_STRP9 RecName: Full=GTPase Era gi|6456490|gb|AAF09161.1|U31915_1 GTP-binding protein homolog [Streptococcus pyogenes] Length = 203 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 4/205 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 3 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ + V +V + + +++ + +IL++NKI Sbjct: 63 HKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D V P++LLEQ + + ++ +SA +G+ +++ L L + D Sbjct: 123 DKVHPDQLLEQIDDFRSQMDFKEVVPISALEGNNVPNLIKLLTDNLEEGFQYFPEDH--- 179 Query: 201 LPMFHFTAEITREKLFLHLHKEIPY 225 P +E+ REK+ +E+P+ Sbjct: 180 -PERFLVSEMVREKVLHLTQQEVPH 203 >gi|61557359|ref|NP_001013247.1| GTPase Era, mitochondrial [Rattus norvegicus] gi|59808216|gb|AAH89885.1| Era (G-protein)-like 1 (E. coli) [Rattus norvegicus] Length = 431 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/331 (29%), Positives = 159/331 (48%), Gaps = 48/331 (14%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HTPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQ 162 Query: 72 IVFLDTPGIFNA-KDSYHKLMIRL---SWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 ++ LDTPGI + K H L + L W +++ AD+V ++VD + L + Sbjct: 163 VILLDTPGIISPVKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRSRLSPQVLQC 222 Query: 123 LKEIAKRSSRLILILNKIDCVKPERL-------LEQAEIANKLVFIEKTFMVSAT---KG 172 L + ++ S IL+LNK+DC+K + + L + + K++ + + F + G Sbjct: 223 LTKFSQVPS--ILVLNKVDCLKQKSVLLELTAALTEGVVNGKMLNVRQAFRSRPSTHCPG 280 Query: 173 HGCDDVLN-----------------YLCSTL----------PLAPWVYSADQISDLPMFH 205 +D ++ S L PW + + ++ Sbjct: 281 PETEDPNTHAVRSPQRTGWPYFQEIFMLSALNNKDVNTLKAQPGPWEFHSGVLTSQTPEE 340 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 A REKL +L +E+PYS T WEE G ++I+Q + V + S +I++G+ G Sbjct: 341 ICANKIREKLLEYLPEEVPYSVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGL 400 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 I I+ E +++ +I V L L VK+ K Sbjct: 401 LISQIAQEVSQDLMDIFLCDVLLRLSVKLLK 431 >gi|224003597|ref|XP_002291470.1| gtp-binding protein [Thalassiosira pseudonana CCMP1335] gi|220973246|gb|EED91577.1| gtp-binding protein [Thalassiosira pseudonana CCMP1335] Length = 446 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 99/363 (27%), Positives = 161/363 (44%), Gaps = 81/363 (22%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VA+VGA NAGKS L+N +G+KV+ V+ K TTR+ + G + ++Q+VF+DTPG Sbjct: 73 VAIVGAPNAGKSQLLNSLIGSKVAAVSRKRHTTRTGILGARTFDDTQLVFIDTPGFLHHE 132 Query: 82 -NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI------AKRSSRLI 134 + K+ KL+ S S ++ AD V LVVD+ R+++ ++ L + +K + Sbjct: 133 MSVKEGVRKLLGEAS-SEMESADFVLLVVDAARKMEDDLRRTLVTLMFLALRSKGRNEFA 191 Query: 135 LILNKIDCVKPE-------------------RLLEQAEIANKLVFIE------------- 162 ++LNK+D V P+ + L Q +K+ F E Sbjct: 192 VVLNKVDLVSPKEKLLMTAADVGSMAESCIRQFLNQRRSPSKVKFGELVDTVLKNYANED 251 Query: 163 ------------------KTFMVSA--TKGHGCDDVLNYLCSTLPLAP-WVYSADQISDL 201 + F SA G DDVL L L+ W+ A + + Sbjct: 252 GFDGVHDDDIELFATLAPEFFFTSAIVKDDEGVDDVLGLLLERATLSDQWIVDAGSATGM 311 Query: 202 PMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE---------EKKDGS--------ILI 244 EI REK++ LH+E+P+S ++ + DGS + I Sbjct: 312 TPVEQVEEIIREKIYRCLHREVPHSVQQQNRMFQLYKPNESKTKSTDGSDVDEDIKILRI 371 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 RQ + V S ++++LG G+ ++ I A K++ E + V L L V+V K H+ Sbjct: 372 RQDLIVRTKSHQRLVLGSGGKTLERIRSTALKDLEESFDCIVDLDLTVRVTKSNQHEAIL 431 Query: 305 CPQ 307 P+ Sbjct: 432 DPE 434 >gi|213859104|ref|ZP_03385075.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 234 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 12/228 (5%) Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + ++LM + + S+I ++V VV+ R + +L ++ + +IL +NK+D V Sbjct: 4 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNV 62 Query: 144 KPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + E+A++ L F+ + F+ +SA G D + + + LP A + D Sbjct: 63 Q-----EKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIASIVRKHLPEAIHHFPEDY 117 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 I+D +EI REKL L E+PYS V E++ + G I +I VER QKK Sbjct: 118 ITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILVEREGQKK 177 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 178 MVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 225 >gi|294155403|ref|YP_003559787.1| GTP-binding protein Era [Mycoplasma crocodyli MP145] gi|291600406|gb|ADE19902.1| GTP-binding protein Era [Mycoplasma crocodyli MP145] Length = 290 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 143/287 (49%), Gaps = 19/287 (6%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 ++G N GKS+L+N + +SIVT QTTR + G+ +E+ QI+F DTPGI + Sbjct: 7 TILGRPNVGKSSLLNSILSYNLSIVTPTPQTTRDQITGVYNEEGYQIIFTDTPGIHKPIN 66 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + ++ T+K+ D+ + + + + I D LK I + + ++ K+D Sbjct: 67 KLGEALNKNAYDTVKNNDLALFLTPADETIGKGDILILDNLKHIKNK----VAVITKVDK 122 Query: 143 V--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW----VYSAD 196 + KPE L+EQ + K K S D +L STL + Y D Sbjct: 123 IKGKPE-LIEQKLESLKEYGFNKILSTSTQNSKSID----FLISTLKEFTYEDNAYYDQD 177 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK 256 ++D PM EI RE L+ E+P+S V +++ E +D + I+ I+V++ SQK Sbjct: 178 YLTDKPMRFLAKEIIRESAINSLYDELPHSIAVEIDEFIE-QDEFMEIKATIFVKKDSQK 236 Query: 257 KIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++G G+ IK I ++ +I+ V L L VKV K W D K Sbjct: 237 GMVVGVGGKKIKEIGTSSRLKISHQFGCRVILNLNVKVAKKWVDDEK 283 >gi|21672529|ref|NP_660596.1| GTP-binding protein Era [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008419|sp|Q8K9R2|ERA_BUCAP RecName: Full=GTPase Era gi|21623152|gb|AAM67807.1| GTP-binding protein Era [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 278 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 146/281 (51%), Gaps = 22/281 (7%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 G +A+VG N GKSTL+N + ++SI + K TT+ + GI +++ Q +++DTPGI+ Sbjct: 9 GYIAIVGKPNVGKSTLINEIIENEISITSKKKNTTQKNILGIKTKQLHQFIYVDTPGIYL 68 Query: 82 -NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N KD S+ IK + ++ +VD K + +L +I K +I ++NKI Sbjct: 69 NNEKDD--------SFKIIKSSILILFIVD-RTVWKTDDEIVLNKIKKNKIPIICVINKI 119 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFM------VSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D ++L+++ I + F+ K +SA K + N + LP ++ Sbjct: 120 D-----KILDKSIILPHINFLLKKINPIEIIPISAKKRENIVLLENLIYPYLPNNNHIFP 174 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 I+ + +EI R+KL L E+P V E EEK + IR IYV+ Sbjct: 175 KKYITTHSLSFSISEIIRQKLIFFLRDELPSIITVKIESIEEKFKKKLYIRAAIYVKHER 234 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 QKKI++GK + IK IS+ ++ +I + + ++LI++VKV+ Sbjct: 235 QKKIIIGKKAEGIKKISIASRLDIEKKINMKIYLIIWVKVK 275 >gi|261886518|ref|ZP_06010557.1| GTP-binding protein Era [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 270 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 142/275 (51%), Gaps = 9/275 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG ++L+G TNAGKS+L+N + K+S+V+HK TR + GIV K+SQ +F+DTPG+ Sbjct: 2 KSGFISLIGRTNAGKSSLLNYLLNEKISMVSHKQNATRRKINGIVMHKDSQAIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + +KLM+ + +I D++ V ++ N L K+ + ++ + KI Sbjct: 62 HESNKTMNKLMVEAAIKSIGDCDLLLFVASVFDNIE-NYKKFLN--LKKDAPHLIAITKI 118 Query: 141 DCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV-LNYLCSTLPLAPWVYSADQ 197 D + + A++ ++ + K + + K ++ L+ + LP + Y Sbjct: 119 DEASDKEIF--AKLNEYQIYSDEFKAIIPLSVKKQAYKNILLDEIYKYLPEHEYFYDPQY 176 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKK 257 ++ + E ++ + E+PYS+ V +K EK++ + + +I + K Sbjct: 177 LTTANEREIFRDFILEAVYECVSDEVPYSTDVNVDKVVEKQNITEIYATII-TDNEHHKA 235 Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFV 292 I+LGKNGQ IK I ++A+K I+ + + L L V Sbjct: 236 ILLGKNGQTIKRIGIDARKIISTLFNNKMFLKLNV 270 >gi|203284558|ref|YP_002222298.1| GTP-binding protein [Borrelia duttonii Ly] gi|226741168|sp|B5RMK6|ERA_BORDL RecName: Full=GTPase Era gi|201084001|gb|ACH93592.1| GTP-binding protein [Borrelia duttonii Ly] Length = 290 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G + GKSTL+N G ++SI + QTTR+ ++GI ++K QI+F+DTPG Sbjct: 2 KSGFVSIIGRPSTGKSTLLNSICGHQISITSSTPQTTRNKIKGIFTDKRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K +++ ++ +S I +++ V+D + +++L I + I+++NKI Sbjct: 62 HLSKKNFNIALMNNVYSAIIETELIIYVIDIQDQPGTEENEILTIIQRSKINFIVVINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEK-------TFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 D K ++ EI + F+E+ +SA K + + + + L P Y Sbjct: 122 DIHKT----KEKEI---MTFLEEKKIQKNKIIKISAEKQINIETMKDKIYENLNEGPLYY 174 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + +D + +EI R L +E+PYS E E+ ++ I+ I V Sbjct: 175 PKEYYTDQKINLRISEIIRGVTIKKLKEELPYSIYTEIEILED-RENKFFIKANIIVAGE 233 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++GK G+ IK+I E++K I++ILE+ +L L VK++K+W + K Sbjct: 234 SQKGIIVGKGGKGIKSIGEESRKIISKILEKKCNLFLQVKLRKNWNKNAK 283 >gi|330982802|gb|EGH80905.1| GTPase Era [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 252 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 135/253 (53%), Gaps = 16/253 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKIMLGKNG 264 R QKKI++G G Sbjct: 239 RDGQKKIIIGDKG 251 >gi|156089207|ref|XP_001612010.1| small GTP-binding protein domain containing protein [Babesia bovis] gi|154799264|gb|EDO08442.1| small GTP-binding protein domain containing protein [Babesia bovis] Length = 340 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/315 (24%), Positives = 141/315 (44%), Gaps = 45/315 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 V+LVG NAGKS+L+N + ++ V+ KV TTR ++GI+ Q+VF D PGI + Sbjct: 24 VSLVGLPNAGKSSLMNMLLNTPIAAVSPKVNTTREDIKGILCSDSCQMVFTDCPGILESH 83 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---------KRSSR- 132 + + ++ +W + +D+ ++D+ + + + +++ +A R+S Sbjct: 84 RRRKFCAPLVDTAWRAYRESDVCLFIIDAVKRPRAELFRVIRNLAGATPYSLDIDRTSDK 143 Query: 133 -------------------LILILNKIDCVKPERLLE--QAEIANKLVFIEKTFMVSATK 171 + L+LNKID VK ++ ++ E+ N F + F SA Sbjct: 144 ALDDDFEDTFEASSEDRIPVALVLNKIDLVKHKKWVKCRTRELKNHGAFAD-IFYTSAKH 202 Query: 172 GHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVT 231 G G + ++ +L S W Y D ++ + + R L+ +KE+PY Sbjct: 203 GIGGEHIITFLKSMAKSGHWAYPPDMVTTMSRVQVVEQTVRTYLYCWFNKELPYQIGQKI 262 Query: 232 EKWEEKKDGSILIRQV-----------IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAE 280 W +GS++I V +YV + KI+ G G+ +K I +++ Sbjct: 263 IGWTRVDNGSLVIEMVGNTCWQYIVQELYVRNNNAAKIICGIQGRLVKQIQKNVSYRLSK 322 Query: 281 ILEQPVHLILFVKVQ 295 + V L + VKV+ Sbjct: 323 MWSDTVFLYIHVKVK 337 >gi|328725521|ref|XP_003248514.1| PREDICTED: GTPase Era-like [Acyrthosiphon pisum] Length = 208 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 99/182 (54%) Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + + + + L+LNKID + P++LL + E K + + +SA +G + +L Sbjct: 19 LKQTKTPVFLVLNKIDLIHPDQLLVEIEKYQKTMDFAEIIPISALEGLNIETLLEQFKKY 78 Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 L P Y DQISD P AE+ REK ++EIP++ V +K + + + + Sbjct: 79 LEEGPMYYPKDQISDHPEQFVVAELIREKALHLTNQEIPHAIGVNVDKMTKAEGEKVQVE 138 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IYVER SQK I++GK G+ +K I A+++I +L V+L L+VKVQKDW + P Sbjct: 139 ATIYVERDSQKGIVIGKGGKMLKEIGKRARRDIEMLLGSKVYLDLWVKVQKDWRNKPNFI 198 Query: 306 PQ 307 Q Sbjct: 199 KQ 200 >gi|203288092|ref|YP_002223107.1| GTP-binding protein [Borrelia recurrentis A1] gi|226741171|sp|B5RQ02|ERA_BORRA RecName: Full=GTPase Era gi|201085312|gb|ACH94886.1| GTP-binding protein [Borrelia recurrentis A1] Length = 290 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 155/290 (53%), Gaps = 15/290 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G + GKSTL+N G ++SI + QTTR+ ++GI ++K QI+F+DTPG Sbjct: 2 KSGFVSIIGRPSTGKSTLLNSICGHQISITSSTPQTTRNKIKGIFTDKRGQIIFIDTPGF 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +K +++ ++ +S I +++ V+D + +++L I + I+ +NKI Sbjct: 62 HLSKKNFNIALMNNVYSAIIETELIIYVIDIQDQPGTEENEILTIIQRSKINFIVAINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEK-------TFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 D K ++ EI + F+E+ +SA K + + + + L P Y Sbjct: 122 DIHKT----KEKEI---MTFLEEKKIQKNKIIKISAEKQINIETMKDKIYENLNEGPLYY 174 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + +D + +EI R L +E+PYS E E+ ++ I+ I V Sbjct: 175 PKEYYTDQKINLRISEIIRGVTIKKLKEELPYSIYTEIEILED-RENKFFIKANIIVAGE 233 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 SQK I++GK G+ IK+I E++K I++ILE+ +L L VK++K+W + K Sbjct: 234 SQKGIIVGKGGKGIKSIGEESRKIISKILEKKCNLFLQVKLRKNWNKNAK 283 >gi|58699336|ref|ZP_00374112.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila ananassae] gi|58534148|gb|EAL58371.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila ananassae] Length = 128 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 2/120 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKSTL+N +G K++IVT KVQTTR+ +RG+ + +Q+VF D+PGIF+A+ Sbjct: 9 VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV--NIHDLLKEIAKRSSRLILILNKIDC 142 K +++ +WS +K +DI L+VD LK I + + + R IL++NK DC Sbjct: 69 TKLEKALVKSAWSAVKDSDITLLLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDC 128 >gi|293335577|ref|NP_001167959.1| hypothetical protein LOC100381675 [Zea mays] gi|223945135|gb|ACN26651.1| unknown [Zea mays] Length = 165 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 1/161 (0%) Query: 137 LNKIDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 +NK+D V+ ++ LL+ A+ L E+ FMVS KG G D++ YL PW Sbjct: 1 MNKVDLVEDKKDLLKVAKEFEDLPGYERYFMVSGLKGKGVKDLIQYLMDQAVRRPWDEEP 60 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 +++ M + E+ REK+ H+H+EIPY W+E KDGS+ + Q + SQ Sbjct: 61 TVMTEEVMKTISLEVVREKMLHHIHQEIPYVIEHRLMGWKELKDGSLRVEQHFIAPKQSQ 120 Query: 256 KKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 ++I++GKNG I I +EA +E+ I ++ VHLIL V+V K Sbjct: 121 RQILVGKNGSKIGRIGIEANEELRSIFKRDVHLILQVRVAK 161 >gi|326430169|gb|EGD75739.1| hypothetical protein PTSG_07853 [Salpingoeca sp. ATCC 50818] Length = 412 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 93/336 (27%), Positives = 139/336 (41%), Gaps = 73/336 (21%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG+ N GKSTL N VGAKV+ V+ + TTR V I + +Q+V DTPG+ + Sbjct: 76 VAVVGSPNVGKSTLANAIVGAKVAAVSPRAHTTRREVHCIWTHDNTQVVLSDTPGLVS-- 133 Query: 85 DSYHKLMIRL---------SWSTIKHADIVCLVVDSHRELK-------------VNIHDL 122 H+L +L + I +DIV VVD L +N Sbjct: 134 ---HQLARKLRTPRSLLIDPRNAIFDSDIVAAVVDDTTVLDERRWHALRSPQRFLNTIGT 190 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLE-------------------------------- 150 + A R L++NK+DCV ++ L+ Sbjct: 191 SLDRALTGKRAFLVINKVDCVPQQQQLDAFVAFVQQHARARSHTANHGADSDCHGSRGAG 250 Query: 151 ------------QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 AE V E+ F VSA D+ YL + PW Y + Q+ Sbjct: 251 VSIDQKGAICSADAEEDGSGVVFERIFPVSALDPATLGDLKEYLQAQALPKPWQYDSGQV 310 Query: 199 SDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKI 258 + EI RE++FL +EIPY + +E +DG + I I E+ SQK I Sbjct: 311 TSHSFPELLLEIVREQMFLRYKQEIPYVLQHNLDSYEVDEDGVLRIYWTISTEQRSQKPI 370 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 ++GK G +I+ + + + L PV I+ ++V Sbjct: 371 VIGKKGASIREAATAIQDTLGSQLGMPV--IMNIRV 404 >gi|148827173|ref|YP_001291926.1| GTP-binding protein Era [Haemophilus influenzae PittGG] gi|148718415|gb|ABQ99542.1| GTP-binding protein Era [Haemophilus influenzae PittGG] Length = 240 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 5/234 (2%) Query: 75 LDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DTPG+ K + ++LM R + S I D++ VVD + +L ++ + + Sbjct: 1 MDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPV 59 Query: 134 ILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +L +NK+D +K + L ++++K F +SA +G+ ++ + +L Sbjct: 60 VLAINKVDNIKNKDDLLPFITDLSSKFNFAH-IVPISAQRGNNVHELEKIVRQSLREGVH 118 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + D ++D +EI REKL +E+PYS V E+++ + G+ I +I VE Sbjct: 119 HFPEDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVE 178 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 179 REGQKKMVIGAGGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 232 >gi|255023884|ref|ZP_05295870.1| GTP-binding protein Era [Listeria monocytogenes FSL J1-208] Length = 211 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 101/178 (56%), Gaps = 1/178 (0%) Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 +++++ + + L++NKID + PE L + E L+ ++ +SA +G+ ++L Sbjct: 17 IIEKLKNVQTPVFLLINKIDLIAPEDLFKLIEQYRDLMEFDEIIPISALQGNNVPNLLEQ 76 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK-KDG 240 + L + P Y DQI+D P +E+ RE++ +E+P+S VV E E+ K Sbjct: 77 TNANLEIGPMYYPKDQITDHPERFIISELIREQVLQLTREEVPHSVAVVIEGIEKNPKTE 136 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 + I I VER +QK I++GK GQ +K I + A+KEI +L V L ++VKVQK+W Sbjct: 137 KLTINATIIVERSTQKGIIIGKQGQMLKQIGMRARKEIERLLGSKVFLEVWVKVQKNW 194 >gi|317374939|sp|Q8EW66|ERA_MYCPE RecName: Full=GTPase Era Length = 298 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 151/294 (51%), Gaps = 21/294 (7%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKESQIVFLDTPG 79 + G V++VG N GKSTL+N +V I ++K QTTR+++ S ++ I F+DTPG Sbjct: 2 KYGIVSIVGKPNVGKSTLLNNIFEREVVISSNKPQTTRNMIEISYDSIEDCVINFIDTPG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILILN 138 + N K+ + +++K +D+V + D R+ + LK + + ++L+LN Sbjct: 62 LHNPKNKLDLFLNSQVKASLKKSDLVLFLFDLSRDFDSEDEECLKVLKDFNCNNVVLVLN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF---MVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 K D L + EI N I K F V +DV + L +T+ Y Sbjct: 122 KRD------LKSEEEIKNAKQSISKMFDFTNVLEINSKSKEDV-SVLLNTIKEHIKEYEG 174 Query: 196 DQISDLPMFH-------FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQV 247 ++ DL + F +E+ RE + +EIPY ++ ++ + ++D ++L I Sbjct: 175 EK-KDLELLKKEVSDKFFVSELIREIIINSFRQEIPYGVAILIDEMKYEQDKNLLTIVYS 233 Query: 248 IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 I VE+ SQK I++GK G IK I++ ++ +++I + + +VKV+KDW ++ Sbjct: 234 IIVEKESQKPIIIGKGGSMIKKINISLRERLSDIYDCKIFTNSYVKVKKDWRNN 287 >gi|91088419|ref|XP_966917.1| PREDICTED: similar to CG7488 CG7488-PA [Tribolium castaneum] gi|270011756|gb|EFA08204.1| hypothetical protein TcasGA2_TC005831 [Tribolium castaneum] Length = 336 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 126/263 (47%), Gaps = 35/263 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKST +N + KV + KV TTR+ + I +E +SQIVFLDTPG+ + + Sbjct: 37 VAVIGVPNVGKSTFINNLMDRKVCPASSKVHTTRAKSQAIFTEGDSQIVFLDTPGLVSFQ 96 Query: 85 D----SYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLIL 135 + S K ++ S S+++ ADI+ ++ D + +L + + LL++ + S L Sbjct: 97 EYKKFSLEKSFLKDSKSSLREADIIGVIHDASNIWTREKLDIKVIRLLEDNKTKPS--FL 154 Query: 136 ILNKIDCVKPERLL------------EQAEIANKLVFIEK----------TFMVSATKGH 173 +LNK+D +K +R L E A I +K FMVSA G Sbjct: 155 VLNKVDIIKSKRKLLDVTRQLTENCIEGAPIPGGKPLRDKETRGWPHFSDVFMVSALTGS 214 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK 233 G D+V NYL W Y + SD + + KL L +EIPY+ E Sbjct: 215 GLDEVKNYLIRNAKPGEWPYPGEIWSDKTAEEIIVDSVKAKLLDFLPQEIPYTLKPEMEF 274 Query: 234 WEEKKDGSILIRQVIYVERPSQK 256 + G +I V+ V PS++ Sbjct: 275 FNINDKG--VISAVVLVHCPSKR 295 >gi|541363|pir||B36933 Era homolog - Streptococcus mutans (fragment) gi|2749952|gb|AAC38048.1| G-protein [Streptococcus mutans] Length = 169 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 97/166 (58%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + M+ ++ST++ D V +V + + + +++ + +IL++NKI Sbjct: 64 HKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERLKAAKVPVILVINKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D V P++LLEQ + + ++ +SA +G+ +++ L L Sbjct: 124 DKVHPDQLLEQIDDFRNQMDFQEIVPISALQGNNVSHLVDLLVDHL 169 >gi|145528592|ref|XP_001450090.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124417690|emb|CAK82693.1| unnamed protein product [Paramecium tetraurelia] Length = 449 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 155/300 (51%), Gaps = 29/300 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIF 81 V+++G N+GKST +N+ +G +S V++K TT S +RG+ ++ +S Q+ +DTPG+ Sbjct: 106 AVSIIGPPNSGKSTFLNQLIGEPISAVSNKSNTTVSEIRGVHTDLKSGVQMELVDTPGV- 164 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK------------- 128 + + K + +W I+ ++V +++D+ + L +++ +++ + K Sbjct: 165 TKRYKFSKHFVTKAWDVIEDTNMVIILIDAIKTLDISMKNVMSRLNKIKVDQEQLKSYFR 224 Query: 129 -----RSSR-----LILILNKID-CVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 R+S IL+ NK+D C ++L Q E+ + L ++TF +S+ G+G D Sbjct: 225 NEDDFRASEDKPIPKILVFNKMDLCFNKKKLKWLQTEMED-LGKYDQTFYISSLTGYGMD 283 Query: 177 DVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE 236 ++ YL S W Y+ +Q +I R+ +F + EIP+ + +++ Sbjct: 284 ELKQYLYSQSFQCRWKYNENQKHLFTPMDQLEQIVRQAIFKRFYNEIPFIIGIYVKEFRV 343 Query: 237 KKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 S I I V+ SQ +I++G++G+ IK + E + +A+I ++ + L V +++ Sbjct: 344 TSKESAKIEVQINVQTSSQARIVIGEDGRAIKQVKNEIEIVMADIYKRLFQVKLQVTIKQ 403 >gi|149053494|gb|EDM05311.1| Era (G-protein)-like 1 (E. coli), isoform CRA_b [Rattus norvegicus] Length = 248 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 139/283 (49%), Gaps = 41/283 (14%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q++ LDT Sbjct: 3 ENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQVILLDT 62 Query: 78 PGIFNA-KDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 PGI + K H L + L W +++ AD+V ++VD + + +R Sbjct: 63 PGIISPVKQKRHHLELSLLEDPWKSMESADLVVVLVDV---------------SDKWTRS 107 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L + C L + +++ + LV ++ + A G PW + Sbjct: 108 RLSPQVLQC-----LTKFSQVPSILVLNKQYLLTQAQPG-----------------PWEF 145 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + ++ A REKL +L +E+PYS T WEE G ++I+Q + V + Sbjct: 146 HSGVLTSQTPEEICANKIREKLLEYLPEEVPYSVQQKTVIWEEGPSGELVIQQNLLVPKE 205 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 S +I++G+ G I I+ E +++ +I V L L VK+ K Sbjct: 206 SHVRILIGQKGLLISQIAQEVSQDLMDIFLCDVLLRLSVKLLK 248 >gi|145495077|ref|XP_001433532.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124400650|emb|CAK66135.1| unnamed protein product [Paramecium tetraurelia] Length = 449 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 153/300 (51%), Gaps = 29/300 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIF 81 V+++G N+GKST +N+ +G +S V++K TT S +RG+ ++ +S QI +DTPG+ Sbjct: 106 AVSIIGPPNSGKSTFLNQMIGEPISAVSNKSNTTVSEIRGVHTDVKSGVQIELVDTPGV- 164 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK------------- 128 + + K + +W I+ ++V +++D+ + L +++ +++ + K Sbjct: 165 TKRYKFSKHFVTKAWDVIEDTNMVIILIDAIKTLDISMKNVMSRLNKIRVDQEQLRSYFR 224 Query: 129 ----------RSSRLILILNKID-CVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCD 176 + IL+ NK+D C ++L Q E+ + L ++TF +S+ G+G + Sbjct: 225 NEDDFKQSEEKPIPKILVFNKMDLCFNKKKLKWLQTEMED-LGKYDQTFYISSQTGYGME 283 Query: 177 DVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEE 236 ++ YL S W Y+ +Q +I R+ +F + EIP+ + +++ Sbjct: 284 ELKQYLYSQSFQCRWKYNENQKHLFTPMDQLEQIVRQAIFKRFYNEIPFVIGIYVKEFRV 343 Query: 237 KKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 S I I V+ SQ +I++G++G+ IK + E + +A+I ++ + L V +++ Sbjct: 344 TSKESAKIEVQINVQTSSQARIVIGEDGRAIKQVKNEIEIGMADIYKRLFQVKLQVTIKQ 403 >gi|330982652|gb|EGH80755.1| GTPase Era [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 245 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 131/247 (53%), Gaps = 16/247 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + N + + ++ M + + + +K D+V VVD R + +L+ + +IL +N Sbjct: 67 MHKNGEKALNRYMNKTASAALKDVDVVIFVVDRTRWTDED-QMVLERVQYVQGPVILAIN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ +++++ L +++ +SA GH + + + + S LP Sbjct: 126 KTD-----RIEDKSDLMPHLEWLQGQLPNASIVPISAQHGHNLEALESLIASHLPENDHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVE 251 + DQI+D AE+ REK+ L E+PY V E++ K+ G L I +I VE Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQLGAELPYQITVEIEEF--KQQGRTLHIHALILVE 238 Query: 252 RPSQKKI 258 R QKKI Sbjct: 239 RDGQKKI 245 >gi|261380116|ref|ZP_05984689.1| GTP-binding protein Era [Neisseria subflava NJ9703] gi|284797337|gb|EFC52684.1| GTP-binding protein Era [Neisseria subflava NJ9703] Length = 274 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 145/271 (53%), Gaps = 14/271 (5%) Query: 39 VNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 +N +G K+SI + K QTTR+ V GI ++ +Q VF+DTPG + + L RL+ + Sbjct: 1 MNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGF--QTNHRNALNDRLNQNV 58 Query: 99 IKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIAN 156 + V +VV ++ D +LK++ K + ++L++NKID K + N Sbjct: 59 TEALSGVDVVVFVVEAMRFTDADRVVLKQLPKHTP-VVLVVNKIDKDKAKDKFALEAFIN 117 Query: 157 KLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEI 210 + + + F VSA G ++L L LP + +Y D ++D EI Sbjct: 118 E---VRQEFEFAASEAVSAKHGLRIANLLELLKPYLPESIPMYPEDMVTDKSSRFLAMEI 174 Query: 211 TREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTI 270 REKLF +L +E+PY+ V E++EE++ G I + V++ SQK I++GK G+ +K I Sbjct: 175 VREKLFRYLGEELPYAMNVEVEQFEEEESGLFRIYIAVLVDKDSQKAILIGKGGEKLKKI 234 Query: 271 SLEAKKEIAEILEQPVHLILFVKVQKDWGHD 301 S EA+ ++ ++ + V L ++VKV+ W D Sbjct: 235 STEARLDMEKLFDTKVFLKIWVKVKSGWADD 265 >gi|221132207|ref|XP_002155788.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 321 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 22/223 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++GA NAGKSTL+N VG++VS V+ TTR++ GI + QI+F DTPGI + + Sbjct: 23 VAILGAPNAGKSTLINAAVGSRVSAVSEIKHTTRTVANGIKNIGNCQIIFTDTPGIVSFE 82 Query: 85 DSYHKLM----IRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRL--ILIL 137 + + M +R AD++ ++ D + ++ + I + + EI + + ILIL Sbjct: 83 EGHRLNMDRAHLRGPRRVAGSADMLAIITDVASKKTRNFIDENIIEIMNSNLEVPAILIL 142 Query: 138 NKIDCVKPER-------LLEQAEIANKLVF--------IEKTFMVSATKGHGCDDVLNYL 182 NKID +K + +L Q + + +K FM+SA G G DD+L+YL Sbjct: 143 NKIDLLKRKEDLIPVASMLMQKRTKDVWGYHSYGGSERFQKCFMISAFSGDGVDDLLDYL 202 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPY 225 ++ W YS D + +E+ REKL + EIP+ Sbjct: 203 VASSKSGAWEYSDQIYCDSSIDFQISEVFREKLLIIFGHEIPW 245 >gi|301617385|ref|XP_002938122.1| PREDICTED: GTP-binding protein era homolog [Xenopus (Silurana) tropicalis] Length = 445 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 157/348 (45%), Gaps = 78/348 (22%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G+ NAGKSTL N+ +G KV V+ KV TTR +G+++E E+Q+V LDTPG+ Sbjct: 100 IAIIGSPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQAQGVITEGETQLVLLDTPGMVTTS 159 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLIL 135 + + K ++ W ++K AD+V +++D + L + L + S IL Sbjct: 160 KVKRHNLEKSLLHDPWQSMKSADLVLVLLDVSDHWTRSSLNFEVLKCLSQFQNIPS--IL 217 Query: 136 ILNKIDCVKPERL-------LEQAEIANKLVFIE-----------KTFMVSATKGHGCDD 177 +LNK+D +K + + L + + +K I+ K+ M S+ D+ Sbjct: 218 VLNKVDLIKQKGILLDLTNQLTEGTVNSKKALIKSLPRASQGQHAKSNMASSHLSQIQDE 277 Query: 178 VLNYLCSTLPLAPWVYSADQISDLP----------MFHFTA----EI-TREKLFLHLHK- 221 + AP S I DL +F +A E+ T ++ L L K Sbjct: 278 TCITESHQVTAAPIAESNQDIQDLKGKKGWPHFQDVFMLSAVNGDEVQTLKRYLLSLAKP 337 Query: 222 -EIPYSSCVVTEK--------------------------------WEEKKDGSILIRQVI 248 E Y S VVT + WEE G ++I Q + Sbjct: 338 GEWEYHSDVVTSQSPQEICNNIIREKLLEYLPQEVPYNVTQVTDLWEEGPGGELVILQTL 397 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 V++ + K+++G GQ IK I+LEA +++ + V + L VKV+K Sbjct: 398 LVQKENHAKLLIGAGGQMIKRIALEAGQDLMNVFLCEVRVRLSVKVKK 445 >gi|194901584|ref|XP_001980332.1| GG19324 [Drosophila erecta] gi|190652035|gb|EDV49290.1| GG19324 [Drosophila erecta] Length = 373 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/314 (27%), Positives = 142/314 (45%), Gaps = 45/314 (14%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ RS +A++G N GKST +N V +V + KV TTR I + ++Q+VF D Sbjct: 54 EEGQRSLHIAVIGVPNVGKSTFINNTVNHRVCPTSAKVHTTRQSNTAIFTTGQTQLVFYD 113 Query: 77 TPGIFNAKD-SYHKLMIRLSWS---TIKHADIVCLVVD-----SHRELKVNIHDLLKEIA 127 TPG+ + H L + I+HADI+ +V D + +EL + D LK + Sbjct: 114 TPGLVTQHEIRRHHLDQNFKSAYRHAIQHADIIAVVHDASNGWTRKELHPTVLDTLKAYS 173 Query: 128 KRSSRLILILNKIDCVKPERLL-------------------EQAEIANKLVFIEK----- 163 S L+LNKID +K +RLL + K + I K Sbjct: 174 NLPS--FLVLNKIDALKSKRLLLDLIKTLTNDTLTVGKREVQAISTPAKEIRINKRESSW 231 Query: 164 -----TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLH 218 F+VSA G+G ++ NYL L W Y AD +D E R +L + Sbjct: 232 SHFSDVFLVSALTGNGLQEMQNYLVGQAKLRDWKYPADIHTDSTPEAQIVESVRARLLDY 291 Query: 219 LHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQNIKTISLEAKK 276 L +EIPYS E + +K+ ++ + V+ P+ + +++ G+ ++ I+ Sbjct: 292 LPQEIPYSLKCEIEYYSVEKN---VLYTSVQVQCPTTRIERLICGEGNGKLRQITERVTS 348 Query: 277 EIAEILEQPVHLIL 290 ++ E+ Q V L + Sbjct: 349 DLVEMFGQAVSLTI 362 >gi|10441754|gb|AAG17177.1|AF190731_1 GTPase ERA-S [Mus musculus] gi|148680962|gb|EDL12909.1| Era (G-protein)-like 1 (E. coli), isoform CRA_c [Mus musculus] Length = 248 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 136/288 (47%), Gaps = 51/288 (17%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q++ LDT Sbjct: 3 ENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQVILLDT 62 Query: 78 PGIFNA-KDSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 PGI + K H L ++ W++++ AD+V ++VD + L + L + ++ Sbjct: 63 PGIISPVKQKRHHLERSLLEDPWTSMESADLVVVLVDVSDKWTRSRLNPQVLQCLTKFSQ 122 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 S IL+LNK YL + Sbjct: 123 VPS--ILVLNK----------------------------------------QYLLTQAQP 140 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 PW + + ++ A REKL +L +E+PY T WEE G ++I+Q + Sbjct: 141 GPWEFHSGVLTSQTPEEICANKIREKLLEYLPEEVPYGVQQKTVIWEEGPSGELVIQQNL 200 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 V + S +I++G+ G I I+ E +++ +I V + L VK+ K Sbjct: 201 LVPKESHVRILIGQKGLLISQIAQEVGRDLMDIFHCDVLIRLSVKLLK 248 >gi|118399315|ref|XP_001031983.1| small GTP-binding protein domain containing protein [Tetrahymena thermophila] gi|89286319|gb|EAR84320.1| small GTP-binding protein domain containing protein [Tetrahymena thermophila SB210] Length = 439 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/329 (25%), Positives = 150/329 (45%), Gaps = 52/329 (15%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS--EKESQIVFLD 76 N +S VAL+G NAGKS+L+N V +++S V++K TT + G+ + EK++QI+F D Sbjct: 84 NPKSLDVALLGPPNAGKSSLMNYIVKSQISAVSNKANTTYESILGVHTNLEKQTQILFYD 143 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK--------EIAK 128 TPGI + Y K + +W + + ++D + L I + LK E A Sbjct: 144 TPGI-TKQYKYSKAYVTRAWDILNDVNKAIFMIDGVKTLDDKIREALKRLNSLKYNEKAN 202 Query: 129 RSSRLILILNKIDCVKPERLL-------EQAEIAN---------KLVFIEKT-------- 164 + I LN+ D V E+L +A+I + K++ + K Sbjct: 203 KKIDQITQLNQDDPVYKEKLKHILSTDHNKADITDESYGSSSFPKVLVVNKMDLCTNKKK 262 Query: 165 -----------------FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFT 207 F +S G+G +L YL S + W +DL Sbjct: 263 LNWIVSEIEDLSKFDHKFFISCETGYGIPQLLEYLESEAIPSQWKRHPKIKTDLSKVDII 322 Query: 208 AEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNI 267 +I + +F +E+PY + + +++ ++ DG I + + V+ QKKI+ G G+N+ Sbjct: 323 EQIVKSAIFSRYFEEVPYQTGISLKEFSQRNDGLIKLHFELDVQTEHQKKILTGYKGRNV 382 Query: 268 KTISLEAKKEIAEILEQPVHLILFVKVQK 296 + + K E+ ++ ++ + + +KV+K Sbjct: 383 LELISQTKIELIKLFQRDFDITIKIKVRK 411 >gi|328784045|ref|XP_001122128.2| PREDICTED: GTPase Era, mitochondrial-like [Apis mellifera] Length = 342 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 137/295 (46%), Gaps = 17/295 (5%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 I+ N + + Q+N + VA +G NAGKSTLVN+ + + + KV TT I Sbjct: 37 ISKLNHNSELYQENKKLLKVAFLGLPNAGKSTLVNKLIHRSICPTSSKVHTTLHKAEAIY 96 Query: 66 SEKESQIVFLDTPGIFNAKD-SYHKLMIRLSW---STIKHADIVCLVVD-SHRELKVNIH 120 +E +QI+F+DTPG+ +K+ +KL+ S I AD++ ++ D S+ + + Sbjct: 97 TEGNTQIIFMDTPGLVISKEIKTYKLLKTFEEDPKSAITDADVIGIIQDVSNIYTRHKLE 156 Query: 121 DLLKEIAK---RSSRLILILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGH 173 D + + + + L++I NK+D +K + +L N + FM+SA G Sbjct: 157 DFVLDYINNKIKDTPLLMIFNKVDKLKKKNILLDLTRMFTNNNNYPKFDDIFMISALNGD 216 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEK 233 G DD+ YL + W Y + +D + + R KL L E+PY ++ + Sbjct: 217 GVDDLRTYLLDIAKVKNWKYKEEFYTDQSIKTIIEQTVRAKLLDILPYEMPYKVKIIIDY 276 Query: 234 WEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQNIKTISLEAKKEIAEILEQPV 286 E D I + ++ P + KI+L IK ++ + +KE+ V Sbjct: 277 LEFGDDN---INTFVTLDCPKARYVKILLKMKSHKIKCLAFDVEKELRHAFRTTV 328 >gi|307187907|gb|EFN72820.1| GTP-binding protein era-like protein [Camponotus floridanus] Length = 344 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 24/299 (8%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N +S +A++GA NAGKSTLVN+ + + + KV TT++ I E ++Q++F+DTP Sbjct: 49 NQKSLKIAILGAPNAGKSTLVNKLIKRSICPTSSKVHTTQTKTDAIYCEDDTQLIFIDTP 108 Query: 79 GIFNAKDSYHKLMIRLSWS-------TIKHADIVCLVVDSHR-----ELKVNIHDLLKEI 126 G+ + Y L+ S ++ ADIV +V +++ ++ NI +LL E Sbjct: 109 GVVSM---YTSKRYNLAGSFRNDPQVSLAAADIVGIVQEANNIYTRHKIDKNILELLTEK 165 Query: 127 AKRSSRLILILNKIDCV-KPERLLEQAEI---ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +ILI NK+D + + + LLE +I + + + FMVSA G G DD+ YL Sbjct: 166 IINKIPMILIFNKVDKLRRKDVLLELVDIFVKSKESLKFSDIFMVSALTGDGIDDLRTYL 225 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI 242 + W Y S+ + + R KL L EIPY + + +E D SI Sbjct: 226 LDSAKPQDWQYERHIYSNHKCEYIIQQTVRAKLMDILPHEIPYILDIKVDHFETGSDDSI 285 Query: 243 LIRQVIYVERPSQKKIMLGKN-----GQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 I R + ++++ IK +++ ++E+ PV L L V K Sbjct: 286 KAVVSITCPRKNIARLLIRSFKDKLINSRIKQVAIIVEQELQNAFRTPVKLKLVVNFPK 344 >gi|118780366|ref|XP_310115.3| AGAP010622-PA [Anopheles gambiae str. PEST] gi|116131148|gb|EAA05838.3| AGAP010622-PA [Anopheles gambiae str. PEST] Length = 371 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 84/312 (26%), Positives = 144/312 (46%), Gaps = 45/312 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKSTL+NR + +V V+ KV TTR + I S+ SQ + DTPG+ ++ Sbjct: 58 VAIVGMPNAGKSTLINRLIDQRVCPVSAKVHTTRKASKAIHSKANSQAILFDTPGLVGSR 117 Query: 85 D-SYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLIL 135 + H+L + I+H+ ++ +V D + L + +L+E A S L Sbjct: 118 EIKKHQLDTQFVSACRHAIQHSALIGVVHDVSNSWTRHALSPVLLRVLEEYAHIPS--FL 175 Query: 136 ILNKIDCVKPERLL--------------------------EQAEIANK-----LVFIEKT 164 ILNKID +K +R+L E EI + + Sbjct: 176 ILNKIDTLKSKRILLDIVRNLTCDQLASIRNYEKAPSDGLEGKEITSPSRVEGWPHFTEI 235 Query: 165 FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIP 224 FMVSA G G +V++++ + PW + D+ +D P + R +L + +EIP Sbjct: 236 FMVSAMTGDGLREVMSFIHANAKQQPWEHLPDEHTDQPPEQLIVQSVRARLLDFMPQEIP 295 Query: 225 YSSCVVTE-KWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILE 283 Y + TE ++ E G IL ++ +++ G++ ++ I+ + ++ E Sbjct: 296 Y--LLQTELEYYEVVGGRILASTIVTCPNDRIARLVCGESNGKLRQINEQVTSDLIETFG 353 Query: 284 QPVHLILFVKVQ 295 PV L + +V+ Sbjct: 354 MPVLLTITTRVR 365 >gi|283953976|ref|ZP_06371505.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 414] gi|283794581|gb|EFC33321.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 414] Length = 265 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 141/272 (51%), Gaps = 19/272 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+ +G TNAGKSTL+N +G K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSTIGRTNAGKSTLINSLLGEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + ++++L+I+ + +I D++ V DS ++ + N L ++ I+ L Sbjct: 62 HESGATFNQLLIQSAIKSIGDCDVILFVASVFDSVKDYE-NFLSLNPQVPH-----IIAL 115 Query: 138 NKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPLAPWV 192 NK+D LL E A+ + I + G D+++ YL + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSEHFKAIIPYSSKKKSYKKGLLDEIVKYLDE----HEYF 171 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y + +S + E ++ +L E+PYSS V+ + ++ + IL +I + Sbjct: 172 YDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPNLLILEANII-TDT 230 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 S K +++GK G +K I + + +I+++ ++ Sbjct: 231 NSHKAMLIGKEGATLKRIGKDTRFKISKLAQK 262 >gi|195380848|ref|XP_002049173.1| GJ21437 [Drosophila virilis] gi|194143970|gb|EDW60366.1| GJ21437 [Drosophila virilis] Length = 382 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 86/328 (26%), Positives = 150/328 (45%), Gaps = 50/328 (15%) Query: 7 TFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 T N +K+ Q R+ +A++G N GKST +N + KV + KV TTR I++ Sbjct: 51 TVENNNKNPQQQ--RALHIAVIGVPNVGKSTFINNIINHKVCPTSAKVHTTRKANTAILT 108 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWST-----IKHADIVCLVVD-----SHRELK 116 ++Q+VF DTPG+ ++ K + S+ + I+HADI+ ++ D + +EL Sbjct: 109 TGQTQLVFYDTPGLV-TQNEIRKHHLEQSFKSAYRHAIQHADIIAVMQDASNSWTRKELH 167 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLL--------------------------- 149 + D LK A+ S L+LNK+D +K +R+L Sbjct: 168 PTVLDTLKAYAQLPS--FLVLNKVDALKSKRVLLDLIKTLTNDTLNGKRPSKKADLPSRE 225 Query: 150 EQAEIANKLVFIEKT-------FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 EQA + L E + F+VS+ G G ++ +YL S W Y+A+ +D Sbjct: 226 EQATAGHPLNKRETSWNHFSDVFLVSSITGSGLQELQDYLISAAKPRGWRYAANVYTDEK 285 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 E R +L +L +EIPY+ E + +K + V+ P ++++ G+ Sbjct: 286 PESLIVESVRARLLDYLPQEIPYNLKCELEYYNVEKH-VVYTSVVVQCPTPRIERLICGE 344 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLIL 290 + ++ I+ ++ E+ Q V L + Sbjct: 345 SNGKLRQITERVTSDLVEMFGQAVSLTI 372 >gi|195571281|ref|XP_002103632.1| GD18869 [Drosophila simulans] gi|194199559|gb|EDX13135.1| GD18869 [Drosophila simulans] Length = 373 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 142/310 (45%), Gaps = 45/310 (14%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RS +A++G N GKST +N V +V + KV TTR I + ++Q+VF DTPG+ Sbjct: 58 RSLHIAVIGVPNVGKSTFINNTVNHRVCPTSAKVHTTRQSNTAIYTIGQTQLVFYDTPGL 117 Query: 81 FNAKD-SYHKLMIRLSWS---TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSS 131 + H L + I+HADI+ +V D + +EL + D LK + S Sbjct: 118 VTQHEIRRHHLDQNFKSAYRHAIQHADIIAVVHDASNAWTRKELHPTVLDTLKAYSNLPS 177 Query: 132 RLILILNKIDCVKPERLL------------------EQAEIAN-KLVFIEK--------- 163 L+LNKID +K +RLL QA+ A K + I K Sbjct: 178 --FLVLNKIDALKSKRLLLDLIKTLTNDTLTVGKREAQAKSAPVKEIRINKRESSWSHFS 235 Query: 164 -TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKE 222 F+VSA G+G ++ NYL W Y AD +D E R +L +L +E Sbjct: 236 DVFLVSALTGNGLQEMQNYLVGQAKPRDWKYPADMHTDSSPEALIVESVRARLLDYLPQE 295 Query: 223 IPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQNIKTISLEAKKEIAE 280 IPY+ E + +K+ ++ + V+ P+ + +++ G+ ++ I+ ++ E Sbjct: 296 IPYNLKCEIEYYSVEKN---VVYTSVQVQCPTTRIERLICGEGNGKLRQITERVTSDLVE 352 Query: 281 ILEQPVHLIL 290 + Q V L + Sbjct: 353 MFGQAVSLTI 362 >gi|24646434|ref|NP_650248.1| CG7488 [Drosophila melanogaster] gi|23175964|gb|AAF54886.2| CG7488 [Drosophila melanogaster] gi|162944746|gb|ABY20442.1| GH26602p [Drosophila melanogaster] Length = 373 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 142/310 (45%), Gaps = 45/310 (14%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RS +A++G N GKST +N V +V + KV TTR I + ++Q+VF DTPG+ Sbjct: 58 RSLHIAVIGVPNVGKSTFINNTVNHRVCPTSAKVHTTRQSNTAIYTTGQTQLVFYDTPGL 117 Query: 81 FNAKD-SYHKLMIRLSWS---TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSS 131 + H L + I+HADI+ +V D + +EL + D LK + S Sbjct: 118 VTQHEIRRHHLDQNFKSAYRHAIQHADIIAVVHDASNAWTRKELHPTVLDTLKAYSNLPS 177 Query: 132 RLILILNKIDCVKPERLL------------------EQAEIA-NKLVFIEK--------- 163 L+LNKID +K +RLL QA+ A K + I K Sbjct: 178 --FLVLNKIDALKSKRLLLDLIKTLTNDTLTVGKREVQAKSALAKEIRINKRESSWSHFS 235 Query: 164 -TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKE 222 F+VSA G+G ++ NYL W Y AD +D E R +L +L +E Sbjct: 236 DVFLVSALTGNGLQEMQNYLVGQAKPRDWKYPADIHTDSSPEALIVESVRARLLDYLPQE 295 Query: 223 IPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQNIKTISLEAKKEIAE 280 IPY+ E + +K+ ++ + V+ P+ + +++ G+ ++ I+ ++ E Sbjct: 296 IPYNLKCEIEYYSVEKN---VVYTSVQVQCPTTRIERLICGEGNGKLRQITERVTSDLVE 352 Query: 281 ILEQPVHLIL 290 + Q V L + Sbjct: 353 MFGQAVSLTI 362 >gi|170044643|ref|XP_001849950.1| GTP-binding protein era [Culex quinquefasciatus] gi|167867704|gb|EDS31087.1| GTP-binding protein era [Culex quinquefasciatus] Length = 368 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 145/311 (46%), Gaps = 41/311 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKSTL+N + +V + KV TTR++ + I S SQI+ DTPG+ K Sbjct: 55 VAIIGVPNAGKSTLINHLIDHRVCPTSMKVHTTRAVSKAIHSRSNSQIILFDTPGLVGEK 114 Query: 85 D-SYHKL---MIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRL--ILIL 137 + H+L + ++++ ++ +V D S+ + ++ +L E+ K + + LIL Sbjct: 115 EMKKHQLDSGFVSSCRHAVQNSHLIGVVHDVSNTWTRNALNPVLLEVLKAHASIPSFLIL 174 Query: 138 NKIDCVKPERLL---------------------------EQAEIANKLVFIE------KT 164 NKID +K +R+L +Q E++ K E + Sbjct: 175 NKIDTLKSKRILLDIVKNVTNNRLESIKNYSIRKRKSTDKQEEVSRKAPEAEGWPHFSEI 234 Query: 165 FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIP 224 FMVSA G G ++++++ S PW + A + +D + R +L +L +EIP Sbjct: 235 FMVSAMTGDGLKEIMSFVQSHAKTGPWEHLATEHTDQTPEELIVQSVRARLLDYLPQEIP 294 Query: 225 YSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 Y E +E K G I V+ ++++ G+ ++ I+ ++ E Sbjct: 295 YLLQTELEFYENIK-GKIFASAVLTCPSERLERLVCGEANGKLRQITERVTSDLIETFAG 353 Query: 285 PVHLILFVKVQ 295 PV L + +++ Sbjct: 354 PVSLTIATRIK 364 >gi|321473698|gb|EFX84665.1| hypothetical protein DAPPUDRAFT_194445 [Daphnia pulex] Length = 406 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 92/341 (26%), Positives = 151/341 (44%), Gaps = 67/341 (19%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR VA++G NAGKSTLVN+ G + V+ KV TT+ + + ++ E+QIVFLDTPG Sbjct: 64 SRVLQVAILGIPNAGKSTLVNQLSGWQTCSVSRKVHTTKKMSKTVLIRDETQIVFLDTPG 123 Query: 80 I--------FNAKDSY----------HKLMIRL-----SWS----TIKHADIVCLVVDSH 112 + FN S+ L++ L W+ + K ++ L D Sbjct: 124 LVLPAEAKQFNLDKSFVIDPEVALSKANLLLVLHDISNKWTRGSLSSKILRLLHLYPDKE 183 Query: 113 RELKVNIHDLLKE--------------------IA------KRS-SRLILILNKIDCVKP 145 L +N DLLKE IA KRS SR ++ ++ Sbjct: 184 SVLVLNKIDLLKEKRLLLDYTNKLTEGIVGGKSIASNTDQRKRSMSRQNSDMSTVNESNA 243 Query: 146 E-------RLLEQAEIANKL------VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 E R + + E+A ++ + FM+SA G G D++ +L W+ Sbjct: 244 ELSEPTNSRSMSEKEVAKRIEGKMGWPNFSRVFMISAIDGDGVSDIVEHLYGAAKPGRWM 303 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y++ ++D I R KL L KE+PYS WEE G++ I + ++ Sbjct: 304 YNSSVVTDQNPHEMAIAIIRGKLLDILDKELPYSINTSVRYWEEDLSGTLNIVMALDCQK 363 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 K+++G G+ + ++ EA++++ + Q V L + V+ Sbjct: 364 KFTAKVVVGTGGRTVIQLAREAEQDLRNMFRQEVRLKIVVE 404 >gi|157110422|ref|XP_001651093.1| GTP-binding protein era [Aedes aegypti] gi|108878697|gb|EAT42922.1| GTP-binding protein era [Aedes aegypti] Length = 364 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/331 (25%), Positives = 152/331 (45%), Gaps = 47/331 (14%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F++ K+ Q N + VA++G NAGKSTL+N + +V + KV TTRS + I S Sbjct: 33 FSDRKE-PQSNEKLIKVAIIGVPNAGKSTLINHLIDHRVCPTSMKVHTTRSTAKAIQSRA 91 Query: 69 ESQIVFLDTPGIFNAKDSY-HKLMIRLSWS---TIKHADIVCLVVDSHRELKVN-IHDLL 123 SQ++ DTPG+ +D+ H + S ++H+D++ +V D N ++ ++ Sbjct: 92 NSQMILFDTPGLVGDRDAKKHHIDANFLSSCRHAVQHSDLIGVVHDVSNSWNRNALNPVM 151 Query: 124 KEIAKRSSRL--ILILNKIDCVKPERLL----------EQAEIANKLVFIEKT------- 164 ++ K S + LILNKID +K +R+L E I N + K+ Sbjct: 152 VDVLKSYSHIPSFLILNKIDTLKSKRILLDIVKSITNNELESIKNYRIKKRKSSQEKTPA 211 Query: 165 -------------------FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 FMVSA G G +V++++ S W + A + +D Sbjct: 212 EVKPKKPVEAEGWPHFSEIFMVSAFTGDGLKEVMSFIYSHAKSGQWEHLATETTDQTPEQ 271 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTE-KWEEKKDGSILIRQVIYVERPSQKKIMLGKNG 264 + R +L +L +EIPY+ + TE ++ E +G + V+ ++++ G+ Sbjct: 272 LIVQSVRARLLDYLPQEIPYA--LKTELEFFENINGKMFASAVVTCPSERIERLVCGEGN 329 Query: 265 QNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 ++ I+ ++ E P+ L + +V+ Sbjct: 330 GKLRQITERVTSDLIETFAVPIALTIVTRVK 360 >gi|195431140|ref|XP_002063606.1| GK21326 [Drosophila willistoni] gi|194159691|gb|EDW74592.1| GK21326 [Drosophila willistoni] Length = 382 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 86/327 (26%), Positives = 147/327 (44%), Gaps = 52/327 (15%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E Q +S +A++G N GKST +N + +V + KV TTR I + ++ Sbjct: 50 EETSQTQSLQKSLHIAVIGVPNVGKSTFINNIINHRVCPTSAKVHTTRKSHSAICTTGQT 109 Query: 71 QIVFLDTPGIFNAKD-SYHKLMIRLSWS---TIKHADIVCLVVD-----SHRELKVNIHD 121 Q+VF DTPG+ ++ H L S I++AD++ ++ D + +EL + D Sbjct: 110 QLVFHDTPGLVTQREIRKHNLEQSFKSSYRHAIQNADVIAVMHDASNSWTRKELHPTVLD 169 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLL---------------------------EQAEI 154 LK A S LILNKID +K +R+L EQ E Sbjct: 170 TLKAYANLPS--FLILNKIDVLKSKRVLLDLIKTLTNDTLTGKRSTKGVPVRNDVEQVEP 227 Query: 155 ANKLVFIEKT---------FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 A ++T F+VS G+G D++ +YL W Y++D +D Sbjct: 228 AVDTRLRQRTTNWSHFHDVFLVSGLTGNGLDELQDYLQDLAKPRAWKYASDVHTDASPEA 287 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKN 263 E R +L +L +EIPY+ E + +K+ +I + V+ P+Q+ +++ G++ Sbjct: 288 LIVESVRARLLDYLPQEIPYNLKCELEYYSVEKN---VIYTSVQVQCPTQRIERLICGES 344 Query: 264 GQNIKTISLEAKKEIAEILEQPVHLIL 290 ++ I+ ++ E+ Q V L + Sbjct: 345 NGKLRQITERVTSDLVEMFGQAVSLTI 371 >gi|195329386|ref|XP_002031392.1| GM24072 [Drosophila sechellia] gi|194120335|gb|EDW42378.1| GM24072 [Drosophila sechellia] Length = 373 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 87/310 (28%), Positives = 142/310 (45%), Gaps = 45/310 (14%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RS +A++G N GKST +N V +V + KV TTR I + ++Q+VF DTPG+ Sbjct: 58 RSLHIAVIGVPNVGKSTFINNTVNHRVCPTSAKVHTTRQSNTAIYTIGQTQLVFYDTPGL 117 Query: 81 FNAKD-SYHKLMIRLSWS---TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSS 131 + H L + I+HADI+ +V D + +EL + D LK + S Sbjct: 118 VTQHEIRRHHLDQNFKSAYRHAIQHADIIAVVHDASNAWTRKELHPTVLDTLKAYSNLPS 177 Query: 132 RLILILNKIDCVKPERLL------------------EQAEIAN-KLVFIEK--------- 163 L+LNKID +K +RLL QA+ A K + I K Sbjct: 178 --FLVLNKIDALKSKRLLLDLIKTLTNDTLTVGKREVQAKSAPVKEIRINKRESSWSHFT 235 Query: 164 -TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKE 222 F+VSA G+G ++ NYL W Y +D +D E R +L +L +E Sbjct: 236 DVFLVSALTGNGLQEMQNYLVGQAKPRDWKYPSDMHTDSSPEALIVESVRARLLDYLPQE 295 Query: 223 IPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQNIKTISLEAKKEIAE 280 IPY+ E + +K+ ++ + V+ P+ + +++ G+ ++ I+ ++ E Sbjct: 296 IPYNLKCEIEYYSVEKN---VVYTSVQVQCPTTRIERLICGEGNGKLRQITERVTSDLVE 352 Query: 281 ILEQPVHLIL 290 + Q V L + Sbjct: 353 MFGQAVSLTI 362 >gi|167005307|ref|ZP_02271065.1| GTP-binding protein Era [Campylobacter jejuni subsp. jejuni 81-176] Length = 279 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 141/272 (51%), Gaps = 19/272 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V+++G TNAGKSTL+N + K+++V+HK TR ++ IV +++QI+F+DTPG+ Sbjct: 2 KSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVMHEKNQIIFIDTPGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + ++L+++ + +I D++ V DS ++ + N L ++ I+ L Sbjct: 62 HESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYE-NFLSLNPQVPH-----IIAL 115 Query: 138 NKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG-CDDVLNYLCSTLPLAPWV 192 NK+D LL E A+ + I + G D+++ YL + Sbjct: 116 NKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDEIVKYLDE----HEYF 171 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 Y + +S + E ++ +L E+PYSS V+ + ++ + IL +I + Sbjct: 172 YDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPNLLILEANII-TDT 230 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 S K +++GK G +K I +A+ +I+++ ++ Sbjct: 231 NSHKGMLIGKEGATLKRIGKDARFKISKLAQK 262 >gi|195500650|ref|XP_002097463.1| GE26231 [Drosophila yakuba] gi|194183564|gb|EDW97175.1| GE26231 [Drosophila yakuba] Length = 373 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 139/310 (44%), Gaps = 45/310 (14%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RS +A++G N GKST +N V +V + KV TTR I + ++Q+VF DTPG+ Sbjct: 58 RSLHIAVIGVPNVGKSTFINNTVNHRVCPTSAKVHTTRQSNTAIFTTGQTQLVFYDTPGL 117 Query: 81 FNAKD-SYHKLMIRLSWS---TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSS 131 + H L + I+HADI+ +V D + +EL + D LK + S Sbjct: 118 VTQHEIRRHHLDQNFKSAYRHAIQHADIIAVVHDASNAWTRKELHPTVLDTLKAYSNLPS 177 Query: 132 RLILILNKIDCVKPERLL-------------------EQAEIANKLVFIEK--------- 163 L+LNKID +K +RLL + K + I K Sbjct: 178 --FLVLNKIDALKSKRLLLDLIKTLTNDTLTVGKREVQAKSTPAKEIRINKRETSWSHFS 235 Query: 164 -TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKE 222 F+VSA G+G ++ NYL W + AD +D E R +L +L +E Sbjct: 236 DVFLVSALTGNGLQEMQNYLVGQAKPRDWKFPADIHTDSSPEAQIVESVRARLLDYLPQE 295 Query: 223 IPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQNIKTISLEAKKEIAE 280 IPYS E + +K+ ++ + V+ P+ + +++ G+ ++ I+ ++ E Sbjct: 296 IPYSLKCEIEYYSVEKN---VVYTSVQVQCPTTRIERLICGEGNGKLRQITERVTSDLVE 352 Query: 281 ILEQPVHLIL 290 + Q V L + Sbjct: 353 MFGQAVSLTI 362 >gi|84997399|ref|XP_953421.1| GTPase [Theileria annulata strain Ankara] gi|65304417|emb|CAI76796.1| GTPase, putative [Theileria annulata] Length = 434 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/341 (22%), Positives = 147/341 (43%), Gaps = 65/341 (19%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT----------RSIVRGIVSEK 68 N R VAL+G N+GKS+ +N + + VS V+ KV TT R +RGI + Sbjct: 95 NPRFLKVALLGLPNSGKSSFLNSILNSTVSAVSPKVNTTRFQVWLILLFREDIRGIFTVD 154 Query: 69 ESQIVFLDTPGIFNA--KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK-- 124 QIV +D+PGI + + + K ++R +W AD+ +VD+ + K +++++L+ Sbjct: 155 NCQIVLIDSPGIIASHKRRKFCKDLVRTAWKGFDEADLCLFLVDAVKRPKSDLYNILRVL 214 Query: 125 ------------------------------------------------EIAKRSSRLILI 136 + +R + L+ Sbjct: 215 SGKNPIEEHVGSSQRSISPNSYETSLDDPFPDDFEESIDSEEEDLFEDKTGRREVPIALV 274 Query: 137 LNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 LNKID V ++ ++ E+ F + F SA G ++N+L + APWVY Sbjct: 275 LNKIDLVSHKKWVKSRVKELNVHGNFCD-VFYTSAKYSMGFTPLINFLKLSSKPAPWVYP 333 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 +D ++ + ++ R +F +K++PY W ++G++ I +YV Sbjct: 334 SDMVTTMSKVKVVEQLVRTYIFCWFNKDVPYKVEQSIIGWTYAENGTLNIEMELYVRTVK 393 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 K++ G G+ + + +++++ + V L + VK++ Sbjct: 394 VAKMICGIKGRILNQLQKNVSYKLSKMWNEAVFLFVHVKLR 434 >gi|300176588|emb|CBK24253.2| unnamed protein product [Blastocystis hominis] Length = 260 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 136/274 (49%), Gaps = 31/274 (11%) Query: 39 VNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 +N +G KVS V+HKV TTR + G+ + ++Q++F DTPGI K + ++ +T Sbjct: 1 MNSLIGKKVSAVSHKVNTTRLDILGVKTIGDTQLIFHDTPGILQKSSKEEKELTGIAKNT 60 Query: 99 IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKL 158 + D+ ++D + + L +E +++++ LNK D +KP L+++ + KL Sbjct: 61 LSKMDLYLTLIDGS----IPLTYLSRE---NEAQILIALNKCDLMKPATLIQERK---KL 110 Query: 159 VFIE----------------KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 + E +SA KG G ++L L + W++S I++ Sbjct: 111 IVEEVPSLLRPSLGIKDDGSSIISLSALKGQGIKEILRTLQAKARPGRWLFSPGVITNRS 170 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 EI REK+F L++EIPY VV W +K +G +++ + + PSQ++I+ Sbjct: 171 QEEQANEIIREKVFHFLNQEIPYELIVVHRGW-KKLNGGLVLDAELLCQSPSQQRIV--- 226 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 + + + A +I+++ + + +++ V + K Sbjct: 227 -SKIRRQLEFAASDDISKLFGRQIRVMIQVGIDK 259 >gi|332375296|gb|AEE62789.1| unknown [Dendroctonus ponderosae] Length = 357 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 132/280 (47%), Gaps = 41/280 (14%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 +H F Q ++R V ++G N+GKST++N + K + KV TTRS I++ ++ Sbjct: 35 KHPRF-QCDTRLLKVGIMGVPNSGKSTIINHLMDRKACPTSSKVHTTRSAAMAIITLGDT 93 Query: 71 QIVFLDTPGIFNAKD----SYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHD 121 QIVFLDTPG+ N + + ++ S ++ ADIV ++ D + L + I + Sbjct: 94 QIVFLDTPGLINENEKKRFNLENSFLKDSKRALREADIVGVIHDVSNSHTRDRLDIKIIN 153 Query: 122 LLKEIAKRSSRLILILNKIDCVKPER-LLEQAEIAN-----------------KLVFIEK 163 LL+ + S ILILNKID +K +R LL+ + KL F ++ Sbjct: 154 LLESNKDKPS--ILILNKIDMLKSKRKLLDITRLLTDNCVDGKPIPGHQQHSIKLQFEKE 211 Query: 164 T---------FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREK 214 T FMVSA G G +V YL W++ + +D + K Sbjct: 212 TKAWPYFKDIFMVSALTGDGLPEVKKYLVDKSKPGEWLFPDNIWTDKSAEDIIQSSVQAK 271 Query: 215 LFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 L L +EIPYS V E ++ + G +I V+ V+ PS Sbjct: 272 LLDFLPQEIPYSLTVEIEYFDINEKG--VISTVVLVKTPS 309 >gi|195023632|ref|XP_001985722.1| GH20928 [Drosophila grimshawi] gi|193901722|gb|EDW00589.1| GH20928 [Drosophila grimshawi] Length = 381 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/325 (24%), Positives = 150/325 (46%), Gaps = 50/325 (15%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N+ + + R+ +A++G N GKST +N + KV + KV TTR I++ + Sbjct: 53 NDQNNNKKSQQRALHIAVIGVPNVGKSTFINNIINHKVCPTSAKVHTTRKANTAILTSGQ 112 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWST-----IKHADIVCLVVD-----SHRELKVNI 119 +Q+VF DTPG+ ++ K + S+ + I+HADI+ ++ D + +EL + Sbjct: 113 TQLVFYDTPGLVTQRE-IRKHHLEQSFKSAYRHAIQHADIIAVMQDASNSWTRKELHPTV 171 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLL----------------------EQAEIANK 157 D LK A+ S LILNKID +K +R+L E ++ K Sbjct: 172 LDTLKAYAQLPS--FLILNKIDALKSKRVLLDLIKTLTNDTLHKSKKTATPSETPQLITK 229 Query: 158 LVFIEK----------TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFT 207 + + + F+VS+ G G ++ +YL + W ++A+ +D Sbjct: 230 GLPLNQRETNWSHFNDVFLVSSLTGSGLQELQDYLIAAAKQRSWRFAANVYTDESPESLI 289 Query: 208 AEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQ 265 E R +L +L +EIPY+ E + K ++ + V+ P+ + +++ G++ Sbjct: 290 VESVRARLLDYLPQEIPYNLKCELEYYNVDKH---VVYTSVLVQCPTPRIERLICGESNG 346 Query: 266 NIKTISLEAKKEIAEILEQPVHLIL 290 ++ I+ ++ E+ Q V L + Sbjct: 347 KLRQITERVTSDLVEMFGQAVSLTI 371 >gi|148680961|gb|EDL12908.1| Era (G-protein)-like 1 (E. coli), isoform CRA_b [Mus musculus] Length = 295 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 129/274 (47%), Gaps = 57/274 (20%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q++ LDT Sbjct: 3 ENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQVILLDT 62 Query: 78 PGIFNA-KDSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 PGI + K H L ++ W++++ AD+V ++VD + L + L + ++ Sbjct: 63 PGIISPVKQKRHHLERSLLEDPWTSMESADLVVVLVDVSDKWTRSRLNPQVLQCLTKFSQ 122 Query: 129 RSSRLILILNKIDCVKPERLLEQ--AEIANKLV--------------------------- 159 S IL+LNK+DC+K + +L + A + +V Sbjct: 123 VPS--ILVLNKVDCLKQKSVLLELTAALTEGVVNGKKLNIKQALRSRSSTHCPGPETEGP 180 Query: 160 --------------FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 + ++ FM+SA + + YL + PW + + ++ Sbjct: 181 NAHSVRNPQRIGWPYFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLTSQTPEE 240 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD 239 A REKL +L +E+PY V + W E+KD Sbjct: 241 ICANKIREKLLEYLPEEVPYG---VQQVWAEEKD 271 >gi|289670319|ref|ZP_06491394.1| GTP-binding protein Era [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 251 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 126/251 (50%), Gaps = 16/251 (6%) Query: 63 GIVSEKESQIVFLDTPGIFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 GI + E Q+V +DTPG+ K + +++M R + +++ D LV+++ R D Sbjct: 3 GIATFPEGQLVLVDTPGLHREQKRAMNRVMNRAARGSLEGVDAAVLVIEAGR------WD 56 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIE--KTFM----VSATKGHGC 175 +A R + + K +RL ++ + L + +TF +SA K G Sbjct: 57 EEDTLAFRVLSDAQVPVVLVVNKVDRLKDKTALFPFLAQVSEGRTFAAVHPISALKRKGL 116 Query: 176 DDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE 235 + ++ L +P A ++ D+I+D E+ RE+L L +E+PY++ V E++ Sbjct: 117 EALVADLLKLVPEAEAMFGEDEITDRSQRFLAGELVREQLMRQLGEELPYATTVEIERFA 176 Query: 236 EKKDGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 E DG++L I VI+VER QK I++GK G +K I +A+ ++ + V L +V+V Sbjct: 177 E--DGALLRIGAVIWVEREGQKAIVIGKGGTRLKEIGGKARLQMERLFGAKVFLETWVRV 234 Query: 295 QKDWGHDPKCC 305 ++ W D Sbjct: 235 REGWSDDEAAL 245 >gi|195148958|ref|XP_002015429.1| GL11028 [Drosophila persimilis] gi|194109276|gb|EDW31319.1| GL11028 [Drosophila persimilis] Length = 381 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/321 (24%), Positives = 143/321 (44%), Gaps = 53/321 (16%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S +A++G N GKST +N + +V + KV TTR I + ++Q+VF DT Sbjct: 59 DQQMSLHIAVIGVPNVGKSTFINNIINHRVCPTSAKVHTTRKSNTAICTTGQTQLVFYDT 118 Query: 78 PGIFNAKD-SYHKLMIRLSWS---TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 PG+ ++ H L S I+HAD++ ++ D + +EL + D LK A Sbjct: 119 PGLVTQREIRKHHLEQSFKSSYRHAIQHADVIAVMQDVSNSWTRKELHPTVLDTLKAYAN 178 Query: 129 RSSRLILILNKIDCVKPERLL----------------------------EQAEIANKLVF 160 S L+LNKID +K +R+L ++A + Sbjct: 179 LPS--FLVLNKIDALKSKRVLLDLIKTLTNDTLSGQRNGKGATRGLAAATTGQVAEGIPL 236 Query: 161 ---------IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEIT 211 + F+VSA G+G +++ NYL W +++D +D E Sbjct: 237 SKRQTTWDHFDNVFLVSAMTGNGLNELQNYLIGQALPRQWRFASDIHTDASPEALIVESV 296 Query: 212 REKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQNIKT 269 R +L +L +EIPY+ E + +K ++ + V+ P+++ +++ G++ ++ Sbjct: 297 RARLLDYLPQEIPYNLKCELEYYSLEKH---VVYTSVQVQCPTERIERLICGESNGKLRQ 353 Query: 270 ISLEAKKEIAEILEQPVHLIL 290 I+ ++ E+ Q V L + Sbjct: 354 ITERVTSDLVEMFGQAVSLTI 374 >gi|198455742|ref|XP_002138128.1| GA24581 [Drosophila pseudoobscura pseudoobscura] gi|198135377|gb|EDY68686.1| GA24581 [Drosophila pseudoobscura pseudoobscura] Length = 381 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/321 (24%), Positives = 143/321 (44%), Gaps = 53/321 (16%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S +A++G N GKST +N + +V + KV TTR I + ++Q+VF DT Sbjct: 59 DQQMSLHIAVIGVPNVGKSTFINNIINHRVCPTSAKVHTTRKSNTAICTTGQTQLVFYDT 118 Query: 78 PGIFNAKD-SYHKLMIRLSWS---TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 PG+ ++ H L S I+HAD++ ++ D + +EL + D LK A Sbjct: 119 PGLVTQREIRKHHLEQSFKSSYRHAIQHADVIAVMQDVSNSWTRKELHPTVLDTLKAYAN 178 Query: 129 RSSRLILILNKIDCVKPERLL----------------------------EQAEIANKLVF 160 S L+LNKID +K +R+L ++A + Sbjct: 179 LPS--FLVLNKIDALKSKRVLLDLIKTLTNDTLSGQRNGKGATRGLAAATTGQVAEGIPL 236 Query: 161 ---------IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEIT 211 + F+VSA G+G +++ NYL W +++D +D E Sbjct: 237 SKRQTTWDHFDNVFLVSAMTGNGLNELQNYLIGQALPRQWRFASDIHTDASPEALIVESV 296 Query: 212 REKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQNIKT 269 R +L +L +EIPY+ E + +K ++ + V+ P+++ +++ G++ ++ Sbjct: 297 RARLLDYLPQEIPYNLKCELEYYSLEKH---VVYTSVQVQCPTERIERLICGESNGKLRQ 353 Query: 270 ISLEAKKEIAEILEQPVHLIL 290 I+ ++ E+ Q V L + Sbjct: 354 ITERVTSDLVEMFGQAVSLTI 374 >gi|27904734|ref|NP_777860.1| GTP-binding protein Era-like protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395591|sp|Q89AM7|ERA_BUCBP RecName: Full=GTPase Era gi|27904131|gb|AAO26965.1| GTP-binding protein era-like protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 287 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 141/278 (50%), Gaps = 11/278 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGI 80 SG ++G N GKST++N+ + +K+SIV+ K TT+S + GI++ + Q++++DTPGI Sbjct: 7 SGTSVIIGKPNVGKSTIINKLINSKISIVSKKKHTTQSNITGIMNIGLQHQLIYIDTPGI 66 Query: 81 FNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL-I 136 +K +K R + + + + L+++ + N + + I K+ + I I Sbjct: 67 --SKKYVYKNQNKTFRNTMALMHSIQFIFLILE--KTSWTNEDEYILNIVKKYLKPIFAI 122 Query: 137 LNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYS 194 +NKID +K E LL +K ++ +S G + + + L + P + Sbjct: 123 INKIDKIKSKEHLLPHILTLSKKHMFQEIIPISGKTGENIHILSKVIQNKLKIVPKPTFP 182 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPS 254 D ++L + +EI REKL L+L E+PYS V T+ ++ + I VI V Sbjct: 183 FDLKTNLDIKSIVSEIIREKLILYLGDELPYSIQVSTKNIIDRNIKTSYIEAVISVNNTQ 242 Query: 255 QKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFV 292 KKI++G G+ IK A+K + + + ++L L V Sbjct: 243 HKKIIIGCKGKKIKLCGSLARKALEKFFNKSIYLSLKV 280 >gi|195124754|ref|XP_002006852.1| GI18366 [Drosophila mojavensis] gi|193911920|gb|EDW10787.1| GI18366 [Drosophila mojavensis] Length = 379 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 81/327 (24%), Positives = 151/327 (46%), Gaps = 49/327 (14%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E+ N +K+ Q RS +A++G N GKST +N + KV + KV TTR I Sbjct: 51 ELDNKNNNKEHQQ---RSLHIAVIGVPNVGKSTFINNIINHKVCPTSGKVHTTRKANTAI 107 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWST-----IKHADIVCLVVD-----SHRE 114 ++ ++Q+VF DTPG+ + K + S+ + I+HADI+ ++ D + + Sbjct: 108 LTTGQTQLVFYDTPGLV-TQHEIRKHHLEQSFKSAYRHAIQHADIIAVMQDASNSWTRKS 166 Query: 115 LKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLL------------------EQAEIAN 156 L + D LK A+ S +L+LNK+D +K +R+L ++ + + Sbjct: 167 LHPTVIDTLKTYAQLPS--LLVLNKVDALKSKRVLLDLIKTLTNDTLRSKSAIKKISLPS 224 Query: 157 KLVFIE------------KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 + V + F+VS+ G G ++ +YL WVY AD +D Sbjct: 225 ESVGVRLNQRETSWNHFSDVFLVSSITGSGLQELQDYLVDCAKPRRWVYPADVYTDETPE 284 Query: 205 HFTAEITREKLFLHLHKEIPYS-SCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKN 263 E R +L +L +EIPY+ C + ++ ++ + ++ P ++++ G++ Sbjct: 285 TLIVESVRARLLDYLPQEIPYNLKCEL--EYYNVENRVVYTSVLVQCPTPRIERLICGES 342 Query: 264 GQNIKTISLEAKKEIAEILEQPVHLIL 290 ++ I+ ++ E+ Q V L + Sbjct: 343 NGKLRQITERVTSDLVEMFGQAVSLTI 369 >gi|194758196|ref|XP_001961348.1| GF11042 [Drosophila ananassae] gi|190622646|gb|EDV38170.1| GF11042 [Drosophila ananassae] Length = 381 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 51/315 (16%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RS +A++G N GKST +N V KV + KV TTR I ++ ++Q+VF DTPG+ Sbjct: 58 RSLHIAVIGVPNVGKSTFINHIVNHKVCPTSTKVHTTRQSNTAICTQGQTQLVFYDTPGL 117 Query: 81 FNAKDSYHKLMIRLSWST-----IKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRS 130 ++ K + S+ + I++AD++ ++ D + EL + D LK A Sbjct: 118 VTQRE-IRKHHLEQSFKSAYRHAIQNADVIAVIHDASNGWTRNELHPTVLDTLKSYANLP 176 Query: 131 SRLILILNKIDCVKPERLL------------------EQAEIANKLVFIEKT-------- 164 S L+LNKID +K +R+L + A+ E+T Sbjct: 177 S--FLVLNKIDALKSKRVLLDLIKTLTNNTLTGKRSGKDADRNLPPTVAEETRLNKRDTT 234 Query: 165 -------FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFL 217 F+VSA G G +++ +YL W + +D +D E R +L Sbjct: 235 WSHFSDVFLVSAITGSGLNELQDYLVGQARPRKWKFPSDVYTDSNPEALIVESVRARLLD 294 Query: 218 HLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KIMLGKNGQNIKTISLEAK 275 +L +EIPY+ E + +K+ +I + VE P+ + +++ G++ ++ I+ Sbjct: 295 YLPQEIPYNLKCELEYYNVEKN---VIYTSVQVECPTARIERLICGESNGKLRQITERVT 351 Query: 276 KEIAEILEQPVHLIL 290 ++ E+ Q V L + Sbjct: 352 SDLVEMFGQAVSLTI 366 >gi|219112517|ref|XP_002178010.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410895|gb|EEC50824.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 391 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 85/336 (25%), Positives = 151/336 (44%), Gaps = 64/336 (19%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKS L+N + V+ V+ K TTR + G + ++Q+ F+DTPG Sbjct: 48 VAIVGLPNAGKSQLLNVLTQSTVAAVSRKRHTTRDGILGARTVDDTQLYFVDTPGFLRQS 107 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI---AKRS------- 130 K+ ++ ++ + S +++ D LVVD+ R + + + L + A RS Sbjct: 108 QAKKEGLNRDLVVTASSEMENVDFSLLVVDAARRMTDDYEETLVALMLAALRSQGRLEFD 167 Query: 131 -------------------SRLILILNKIDCVKPER-----------LLEQ------AEI 154 ++ ++LNK+D V P+ L EQ E Sbjct: 168 VHSAEEVQSIRTPKGGTNPAKFAVVLNKVDLVHPKSNLMDLAVNIGTLAEQCIKFDAKES 227 Query: 155 ANKLVFIEKT---------FMVSATKGHGCDDVLNYLCS-TLPLAPWVYSADQISDLPMF 204 + +F++ F +SA K G D+L +L P W A + + + M Sbjct: 228 GKEELFLDSAYLQESLPMFFYISALKQRGVQDLLEFLLERATPSTSWEVEAGEATPMTMK 287 Query: 205 HFTAEITREKLFLHLHKEIPYS----SCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 E+ REK++ LHKE+P+S + V+ + +E + ++I Q + V S ++++ Sbjct: 288 ERIEEVIREKIYRCLHKEVPHSIRQENRVLQQGKDEDGNIVLVIHQDLIVRSKSHQELVH 347 Query: 261 GKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 G G+ ++ I A + + +I V L L VK+ + Sbjct: 348 GGGGRTLERIRETAARGLEKIFFCNVVLHLHVKLPR 383 >gi|153824251|ref|ZP_01976918.1| GTP-binding protein era [Vibrio cholerae B33] gi|126518225|gb|EAZ75450.1| GTP-binding protein era [Vibrio cholerae B33] Length = 188 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 4/176 (2%) Query: 133 LILILNKIDCVKP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++L +NK+D VK E +L E++ ++ F++ +SA +G D + ++ LP A Sbjct: 5 VVLCVNKVDQVKDRNEVMLHMLELSKRMQFVD-IVPISAKQGKNTDVLKKHVRDHLPKAV 63 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD-GSILIRQVIY 249 + + ++D +EI REKL +E+PYS V E+++ D I +I Sbjct: 64 HHFPEEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTVEIERFDYNPDTDGFHINALIL 123 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 VER QKK+++GKNG+ IKTI EA+ ++ E+ + V+L +VKV+ W D + Sbjct: 124 VERIGQKKMVIGKNGEKIKTIGREARLDMEELFGRKVYLETWVKVKSGWADDERAL 179 >gi|312959173|ref|ZP_07773692.1| GTP-binding protein Era [Pseudomonas fluorescens WH6] gi|311286943|gb|EFQ65505.1| GTP-binding protein Era [Pseudomonas fluorescens WH6] Length = 233 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 13/213 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q V++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGSVQAVYVDTPG 66 Query: 80 IFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + + ++ M + + + +K D+V VVD + + +L+ + + LI+ LN Sbjct: 67 MHKGGEKALNRYMNKTASAALKDVDVVIFVVDRTKWTDED-QMVLERVQYVTGPLIVALN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTLPLAPWV 192 K D R+ ++AE+ L ++++ +SA GH + + + LP Sbjct: 126 KTD-----RIEDKAELMPHLTWLQEQLPNAQIMPISAQHGHNLEALERVIAGYLPENEHF 180 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPY 225 + DQI+D AE+ REK+ + E+PY Sbjct: 181 FPEDQITDRSSRFLAAELVREKIMRQMGAELPY 213 >gi|213583126|ref|ZP_03364952.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 129 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 68/120 (56%) Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 LP A + D I+D +EI REKL L E+PYS V E++ + G I Sbjct: 1 LPEAIHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDIN 60 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +I VER QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 61 GLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 120 >gi|329572234|gb|EGG53894.1| hypothetical protein HMPREF9520_02387 [Enterococcus faecalis TX1467] Length = 133 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 75/120 (62%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+NR VG K++I++ K QTTR+ ++GI + E+QIVF+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGI 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K M+ +++ ++ D +V + ++ +++ + +S + LI+NK+ Sbjct: 66 HKPKHRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKL 125 >gi|58042513|gb|AAW63692.1| GPT-binding protein-like [Citrobacter sp. MY-5] Length = 123 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 65/111 (58%) Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 + D I+D +EI REKL L E+PYS V E++ + G I +I V+R Sbjct: 3 AEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVDRE 62 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 QKK+++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 63 GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERA 113 >gi|283458064|ref|YP_003362675.1| GTPase [Rothia mucilaginosa DY-18] gi|283134090|dbj|BAI64855.1| GTPase [Rothia mucilaginosa DY-18] Length = 391 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 1/132 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 RSG +LVG NAGKSTL N VG KV+I +++ QTTR +RGIV + E Q++ +DTPGI Sbjct: 33 RSGFASLVGRPNAGKSTLTNAMVGQKVAITSNRPQTTRHTIRGIVHKDEYQLILVDTPGI 92 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + + L ST+ D++ + ++ ++ + ++ S++ ++ I+ K Sbjct: 93 HRPRTLLGERLTDLVASTLSQVDVLGFCIPANEKIGPGDRYIASQLVASSNKPVVAIVTK 152 Query: 140 IDCVKPERLLEQ 151 D V E L EQ Sbjct: 153 ADTVSSEELREQ 164 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 5/143 (3%) Query: 167 VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYS 226 VSA K D V + L PL+P +Y +++D P AE+ RE +E+P+S Sbjct: 243 VSAVKHFQVDAVADLLAQYTPLSPPLYPDGELTDEPEATLIAELVREAALEGAREELPHS 302 Query: 227 SCVVTEKWEEKK----DGSILIRQV-IYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEI 281 V E+ E ++ D +L V +YVER SQK I++GK G N++ I +A+++I + Sbjct: 303 IAVTVEEMEFREGRPADNPLLDVHVNLYVERESQKYIIIGKGGSNLRKIGTKAREQIEAM 362 Query: 282 LEQPVHLILFVKVQKDWGHDPKC 304 L ++L + VKV K+W D + Sbjct: 363 LGTRIYLNIHVKVAKEWQSDARA 385 >gi|145641854|ref|ZP_01797429.1| GTP-binding protein Era [Haemophilus influenzae R3021] gi|145273476|gb|EDK13347.1| GTP-binding protein Era [Haemophilus influenzae 22.4-21] Length = 181 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 3/174 (1%) Query: 134 ILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +L +NK+D +K + L ++++K F +SA +G+ ++ + +L Sbjct: 1 MLAINKVDNIKNKDDLLPFITDLSSKFNFAH-IVPISAQRGNNVHELEKIVRQSLREGVH 59 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 + D ++D +EI REKL +E+PYS V E+++ + G+ I +I VE Sbjct: 60 HFPEDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNERGTYEINGLILVE 119 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 R QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 120 REGQKKMVIGAGGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWADDERAL 173 >gi|145629134|ref|ZP_01784933.1| GTP-binding protein Era [Haemophilus influenzae 22.1-21] gi|144978637|gb|EDJ88360.1| GTP-binding protein Era [Haemophilus influenzae 22.1-21] Length = 194 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 98/186 (52%), Gaps = 3/186 (1%) Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDDVL 179 +L ++ + ++L +NK+D +K + L +++K F +SA +G+ ++ Sbjct: 2 VLNKLRNAKAPVVLAINKVDNIKNKDDLLPFITGLSSKFNFAH-IVPISAQRGNNVHELE 60 Query: 180 NYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD 239 + +L + D ++D +EI REKL +E+PYS V E+++ + Sbjct: 61 KIVRQSLREGVHHFPEDYVTDRSQRFMASEIIREKLMRFTGEELPYSVTVEIEQFKVNER 120 Query: 240 GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 G+ I +I VER QKK+++G GQ IKTI +EA+ ++ + + VHL L+VKV+ W Sbjct: 121 GTYEINGLILVEREGQKKMVIGAGGQKIKTIGMEARADMERLFDNKVHLELWVKVKSGWA 180 Query: 300 HDPKCC 305 D + Sbjct: 181 DDERAL 186 >gi|307212760|gb|EFN88431.1| GTP-binding protein era-like protein [Harpegnathos saltator] Length = 266 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 24/272 (8%) Query: 43 VGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--------FNAKDSYHKLMIRL 94 + ++ + KV TT++ + SE +Q++F+DTPG+ +N S+ K Sbjct: 1 MDGQICPTSSKVHTTQAKADAVYSEGNTQLIFVDTPGVVSKSELKQYNLATSFQKD---- 56 Query: 95 SWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLL 149 ++++ ADI+ ++ DS+ ++ NI LLK++ +ILI NK+D +K + +L Sbjct: 57 PKTSLQAADIIGVIQDSYNIFARNKINSNILQLLKDLDNEIP-MILIFNKVDILKRKDIL 115 Query: 150 EQ-----AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 A+ N L F + FM+SA G G DD+ YL + W Y S+ Sbjct: 116 LHLITILAKSKNSLKFAD-VFMISALTGDGVDDLRTYLLDSAKPREWYYKRHVYSNQTCE 174 Query: 205 HFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNG 264 + R KL +L +EIPY+ V E ++ D S+ + I+L G Sbjct: 175 DIIQQTVRAKLLDNLPQEIPYNMQVKLEHFDPSPDDSVSASVSVTCSTKRICGILLKFKG 234 Query: 265 QNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 ++ I+ A++E+ V L + V+ K Sbjct: 235 NRLRNIARTAEEELRHAFRTSVKLKINVQSAK 266 >gi|45383648|ref|NP_989570.1| GTPase Era, mitochondrial [Gallus gallus] gi|82243559|sp|Q8JIF5|ERAL1_CHICK RecName: Full=GTPase Era, mitochondrial; Short=GdERA; AltName: Full=ERA-like protein 1; Flags: Precursor gi|22093559|dbj|BAC06859.1| E. coli Ras-like protein homologue [Gallus gallus] Length = 461 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 80/129 (62%), Gaps = 11/129 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 ++++GA N+GKSTL N+ +G KV V+ KV TTR RG+++ +++Q++ LDTPG+ + Sbjct: 93 ISIIGAPNSGKSTLSNQLLGRKVFPVSKKVHTTRCKARGVITHEDTQLIILDTPGLTSPM 152 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLIL 135 K HKL M+ W ++KHAD+V ++VD + L + + L + S +L Sbjct: 153 KAKRHKLEAAMLTDPWDSMKHADLVLVLVDVSDHWTRNSLSLEVLKCLSQFPHIPS--VL 210 Query: 136 ILNKIDCVK 144 +LNK+D +K Sbjct: 211 VLNKVDLLK 219 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 65/131 (49%) Query: 165 FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIP 224 FM++A G D + YL PW + + ++ I REK+ +L E+P Sbjct: 330 FMLAALNGEEVDTLKQYLLMQAKPGPWEFHSRVLTSQSPHEICDNIIREKILEYLPLEVP 389 Query: 225 YSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 Y VTE WEE G ++I Q + V R S K +++G+ G I I+ EA +++ I Sbjct: 390 YGVTQVTELWEEGPSGELIIVQNLVVPRKSHKLMLIGRRGALISRIAQEAGQDLMNIFLC 449 Query: 285 PVHLILFVKVQ 295 + L L V+V+ Sbjct: 450 DIRLKLKVEVK 460 >gi|289804516|ref|ZP_06535145.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 192 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 104/190 (54%), Gaps = 13/190 (6%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKTYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAP 190 +NK+D V+ E+A++ L F+ + F+ +SA G D + + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIASIVRKHLPEAI 177 Query: 191 WVYSADQISD 200 + D I+D Sbjct: 178 HHFPEDYITD 187 >gi|257456512|ref|ZP_05621708.1| GTP-binding protein era homolog [Treponema vincentii ATCC 35580] gi|257446172|gb|EEV21219.1| GTP-binding protein era homolog [Treponema vincentii ATCC 35580] Length = 224 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 114/211 (54%), Gaps = 9/211 (4%) Query: 94 LSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKID--CVKPERL 148 ++ + ++ A+ + ++D+ R E ++ I LLK+ + +R+I+ +NK D +P + Sbjct: 4 IAENRLQEAEAILYLIDAARPFGEEELAICALLKD---KQNRVIVGINKTDSPAARPGQT 60 Query: 149 LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTA 208 A + ++ F +SA + G + VL L S LP +Y D +D P+ A Sbjct: 61 RLNVMQALPDLPQDRIFELSAQEKTGLEPVLAALFSLLPEGDLLYPEDFYTDQPVDFRIA 120 Query: 209 EITREKLFLHLHKEIPYSSCVVTEKWEEKKDG-SILIRQVIYVERPSQKKIMLGKNGQNI 267 EI R + L++EIP++ V + E KK+G + +R + VER SQK +++GK I Sbjct: 121 EIIRGQAISRLYEEIPHALYVDIQDMEMKKNGKELFVRAFLCVERESQKAMVIGKGAALI 180 Query: 268 KTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 K I +E++KE+ +I V L L V+V K+W Sbjct: 181 KAIRVESQKELRKIFPYRVQLDLQVRVDKNW 211 >gi|289804220|ref|ZP_06534849.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 111 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/100 (43%), Positives = 60/100 (60%) Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 +EI REKL L E+PYS V E++ + G I +I VER QKK+++G G Sbjct: 3 LASEIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILVEREGQKKMVIGNKGA 62 Query: 266 NIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 63 KIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERAL 102 >gi|213511324|ref|NP_001133545.1| GTPase Era, mitochondrial [Salmo salar] gi|322518583|sp|B5X2B8|ERAL1_SALSA RecName: Full=GTPase Era, mitochondrial; AltName: Full=ERA-like protein 1; Flags: Precursor gi|209154434|gb|ACI33449.1| GTP-binding protein era homolog [Salmo salar] gi|223649262|gb|ACN11389.1| GTP-binding protein era homolog [Salmo salar] Length = 457 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 88/141 (62%), Gaps = 8/141 (5%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +NS+ VA++GA NAGKSTL N+ +G KV V+ KV TTR+ G+++E ++QI+ LDT Sbjct: 104 ENSKVLRVAIIGAPNAGKSTLSNQLLGRKVFAVSKKVHTTRARALGVLTEDDTQIILLDT 163 Query: 78 PGIFN-AKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSS 131 PG+ K H+L ++ W+T+K A +V ++VD + N D +LK + + Sbjct: 164 PGLTTPTKVKRHQLEKSLLEDPWNTVKEAGLVVVMVDVSDKWACNKLDFEVLKCLTQHPD 223 Query: 132 -RLILILNKIDCVKPE-RLLE 150 +L+LNK+D +K + RLLE Sbjct: 224 VPAVLVLNKVDLLKSKSRLLE 244 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 22/213 (10%) Query: 102 ADIVCLVVDSHRELKVNIHDLLKE--IAKRSSRLILILNKIDCVKPERLLEQAEIANKLV 159 AD+ C VV+ K+ + ++K +R+ R D KP + E + L Sbjct: 247 ADLTCGVVNGR---KLQVRRVIKPPWAERRTDREARTSGSGDEEKPGGDVADGEGSEALS 303 Query: 160 FIEK-----------------TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 + K FMVSA G + + YL W Y +D ++D Sbjct: 304 GLSKEQLRALKTQQGWAHFKDVFMVSAVDGEDVETLKRYLVVGAKPGSWQYHSDVLTDQT 363 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 REKL +L KE+PY+ + W ++++G + I +YV++ S K+++G+ Sbjct: 364 PEEICTNTVREKLLEYLPKEVPYTMTQAIDLWHDRENGELDIAVKLYVKKESHMKMVIGQ 423 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 GQ + I+ EA +++ + + V L L VKV+ Sbjct: 424 AGQMVARIAREAGDDLSTVFLREVKLRLSVKVK 456 >gi|329572235|gb|EGG53895.1| KH domain protein [Enterococcus faecalis TX1467] Length = 167 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 83/132 (62%) Query: 167 VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYS 226 +SAT+G+ + +++ L +P P + DQI+D P + +E+ REK+ L EIP+S Sbjct: 19 ISATEGNNFEHLMDVLVEQMPEGPQYFPDDQITDHPEYFIVSELIREKVLLLTRDEIPHS 78 Query: 227 SCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPV 286 VV + + ++ + ++ I VER SQK I++GK G+ +K I +A+++I +L+ V Sbjct: 79 VAVVVDSMKRDENDKVHVQATIIVERDSQKGIIIGKGGKMLKQIGTKARQDIEYLLDDKV 138 Query: 287 HLILFVKVQKDW 298 +L L+VKVQKDW Sbjct: 139 YLELWVKVQKDW 150 >gi|254232506|ref|ZP_04925833.1| GTP-binding protein era [Mycobacterium tuberculosis C] gi|124601565|gb|EAY60575.1| GTP-binding protein era [Mycobacterium tuberculosis C] Length = 202 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 3/184 (1%) Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNY 181 L+ ++ L++I+ KID V E+++ Q ++LV + VSA G D +++ Sbjct: 12 LRSTGPANTTLVVIVTKIDKVPKEKVVAQLVAVSELVTNAAEIVPVSAMTGDRVDLLIDV 71 Query: 182 LCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW--EEKKD 239 L + LP P Y +++D P AE+ RE + E+P+S VV ++ E +D Sbjct: 72 LAAALPAGPAYYPDGELTDEPEEVLMAELIREAALQGVRDELPHSLAVVIDEVSPREGRD 131 Query: 240 GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 I + +YVER SQK I++GK G ++ + A+ +I +L V+L L VKV K+W Sbjct: 132 DLIDVHAALYVERDSQKGIVIGKGGARLREVGTAARSQIENLLGTKVYLDLRVKVAKNWQ 191 Query: 300 HDPK 303 DPK Sbjct: 192 RDPK 195 >gi|47223730|emb|CAF98500.1| unnamed protein product [Tetraodon nigroviridis] Length = 359 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/134 (41%), Positives = 85/134 (63%), Gaps = 8/134 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 VA++GA NAGKSTL N+ +G KV V+ KV TTR+ G+++E ++QI+ LDTPG+ + Sbjct: 21 VAVIGAPNAGKSTLSNQLLGRKVFAVSRKVHTTRNRALGVLTEGDTQIILLDTPGLTTVS 80 Query: 84 KDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKR-SSRLILIL 137 K H+L L W+T+K AD++ ++VD D+ LK +++ + IL+L Sbjct: 81 KVKRHQLEKSLLVDPWNTVKEADLMVVMVDVSDRWMCGRLDMEVLKCLSQHPDTPAILVL 140 Query: 138 NKIDCVKP-ERLLE 150 NK+D VK +RLL+ Sbjct: 141 NKVDKVKAKDRLLD 154 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 65/130 (50%) Query: 165 FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIP 224 FM+S+ + + Y S W Y ++ ++D + REKL L +E+P Sbjct: 230 FMLSSVDREDVETLKTYFISKAKTGSWEYHSEVLTDQSPEDICTNLVREKLLECLPQEVP 289 Query: 225 YSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 YS E W+E ++G + I +Y ++ + K+++G GQ + ++ EA ++++ + + Sbjct: 290 YSVTQSIEFWQEGENGELHINVKLYAKKDTHMKMLIGAGGQVVARMAQEAGEDLSRVFLR 349 Query: 285 PVHLILFVKV 294 V L L K+ Sbjct: 350 DVKLKLSAKL 359 >gi|212696007|ref|ZP_03304135.1| hypothetical protein ANHYDRO_00543 [Anaerococcus hydrogenalis DSM 7454] gi|212676994|gb|EEB36601.1| hypothetical protein ANHYDRO_00543 [Anaerococcus hydrogenalis DSM 7454] Length = 109 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 65/91 (71%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG V++VG N GKSTL+ + +G K+SI+++K QTTR ++ I +++ SQI+FLDTPGI Sbjct: 2 KSGFVSVVGRANVGKSTLMEKILGEKISIISNKPQTTRDEIKIIYNDENSQIIFLDTPGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 ++ + ++ +S ++K +DIV +VD+ Sbjct: 62 QTPRNKLQEHLLEVSEDSLKDSDIVTFIVDN 92 >gi|260834023|ref|XP_002612011.1| hypothetical protein BRAFLDRAFT_86970 [Branchiostoma floridae] gi|229297384|gb|EEN68020.1| hypothetical protein BRAFLDRAFT_86970 [Branchiostoma floridae] Length = 526 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 12/149 (8%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R VA+VGA N+GKSTL NR +G +V V+ KV TTR +++E ++Q+VFLDTPG Sbjct: 34 ARVVTVAIVGAPNSGKSTLTNRLMGRRVCPVSSKVHTTRRKTLAVLTEGDTQVVFLDTPG 93 Query: 80 IFN-AKDSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRS 130 N +K H L M++ +++ AD++ ++VD S ++LK ++ L + K Sbjct: 94 FTNTSKAGRHHLENTMVKDPKASMLEADLIAVMVDPTERQSQKKLKWDLRKALYTLPK-P 152 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLV 159 +LILNK D ++ + L EIA KL Sbjct: 153 IPAVLILNKTDLMRHKTKL--LEIAAKLT 179 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 2/151 (1%) Query: 145 PERLLEQAEIANKLVF--IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 PE+ EI+ + + ++ FM+SA +G G D+ +YL S W YS D ++D Sbjct: 370 PEKTALHQEISRQCGWPGFQEVFMMSAKEGQGVDNFKDYLLSMAKPGDWQYSPDFLTDQS 429 Query: 203 MFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 REKL +L +E+PY+ E W+E + G + I + V + +Q +++G Sbjct: 430 EHEIAYHAIREKLLEYLPQEVPYNIQQEVEMWQEGEGGDLQIVIQLIVSKSTQVPMLIGP 489 Query: 263 NGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 G IK I+ EA +E+ + V L L VK Sbjct: 490 KGATIKKIAKEAAQEMEDTFFTDVFLKLGVK 520 >gi|192447419|ref|NP_001122219.1| GTPase Era, mitochondrial [Danio rerio] gi|322518597|sp|B0S6U7|ERAL1_DANRE RecName: Full=GTPase Era, mitochondrial; AltName: Full=ERA-like protein 1; Flags: Precursor gi|169154659|emb|CAQ15626.1| novel protein similar to vertebrate Era G-protein-like 1 (E. coli) (ERAL1) [Danio rerio] gi|190337559|gb|AAI63480.1| Si:ch211-207c6.1 [Danio rerio] gi|190338414|gb|AAI63468.1| Si:ch211-207c6.1 [Danio rerio] Length = 447 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 97/343 (28%), Positives = 161/343 (46%), Gaps = 65/343 (18%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N++S VA+VG+ NAGKSTL N+ +G K+ V+ KV TTRS G+++E ++QIV LDT Sbjct: 106 ENAKSLKVAIVGSPNAGKSTLTNQLLGRKLFAVSSKVHTTRSRAVGVLTENDTQIVLLDT 165 Query: 78 PGIFNA-KDSYHKLMIRL---SWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRS 130 PG+ K H+L L + ++K AD+V ++V D K++ +++LK +A Sbjct: 166 PGLTTQIKAKRHQLENSLLVDPFKSLKEADLVVVLVDVSDKWTRSKLS-YEVLKCLALNP 224 Query: 131 S-RLILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATK-----GHGCDDVLNYL 182 +L+LNK+D +K + LL A++ +V +K + A+K G + L Sbjct: 225 DVPAVLVLNKVDLLKNKALLLDITAQLTEGMVNGKKIRIHGASKPVRKAAAGANSRLKEK 284 Query: 183 CSTLPLAPWVYSADQISDL------PMF----------HFTAEITREKLFL-------HL 219 + L D++ L P F H E + LF+ Sbjct: 285 KAAGSLEDEADHEDKLKALKSHGGWPHFKDVFMLSSIDHEDVETLKRYLFVAAKPCQWQY 344 Query: 220 HKEI--------------------------PYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 H E+ PY+ E W+E +DG + I +YV++ Sbjct: 345 HSEVLTDQSPEDVCFNTIREKLLQNLPKEVPYTMTQEIEVWKESEDGVLDISIKLYVQKE 404 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 + K+++G GQ I I+ EA ++ +I V L + VK++K Sbjct: 405 THMKMVIGPGGQLITRINQEAGNDLMKIFLCNVRLKISVKLRK 447 >gi|207092966|ref|ZP_03240753.1| GTP-binding protein Era [Helicobacter pylori HPKX_438_AG0C1] Length = 204 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 10/175 (5%) Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLA 189 IL L+KID +++L++ + + + F+ +SA K + +L + L + Sbjct: 21 ILALSKIDTATHKQVLQKLQEYQQY---DSQFLALVPLSAKKSQNLNALLECISKHLSPS 77 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW-EEKKDGSILIRQVI 248 W++ D +SD M EI RE LF L EIPY S V+ +K+ EE+ + R I Sbjct: 78 AWLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEECIDKVYAR--I 135 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 VE+ SQKKI++GKNG NIK I A+ ++ E+ E+ V L L V QK W + K Sbjct: 136 IVEKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLSLQVIAQKSWSKEEK 190 >gi|281206619|gb|EFA80805.1| hypothetical protein PPL_06392 [Polysphondylium pallidum PN500] Length = 273 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 75/138 (54%) Query: 164 TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEI 223 TF+ SAT D + +YL S W ++ + +D +EI +EK++ + EI Sbjct: 135 TFITSATNNIHTDTLKDYLFSKAIDGKWEFNNEIKTDQTDIFRASEIVKEKIYEKMRLEI 194 Query: 224 PYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILE 283 PY T W +G + I Q + V++ S K +LG+NGQ IK I LE++KE+ ++ Sbjct: 195 PYQVTQNTIGWTTFTNGDLRIDQDLIVKKDSHKSAILGRNGQTIKAIYLESRKELEKVFN 254 Query: 284 QPVHLILFVKVQKDWGHD 301 + +HL L VKV+K +D Sbjct: 255 RRIHLFLTVKVKKSEQYD 272 >gi|294637610|ref|ZP_06715890.1| GTP-binding protein Era [Edwardsiella tarda ATCC 23685] gi|291089240|gb|EFE21801.1| GTP-binding protein Era [Edwardsiella tarda ATCC 23685] Length = 137 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%) Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 LP A + + I+D +EI REKL L +E+PYS V E++ + G I Sbjct: 9 LPQAEHHFPEEYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIERFAPNERGGYDIH 68 Query: 246 QVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +I VER QKK+++G G IKTI +EA++++ + + VHL L+VKV+ W D + Sbjct: 69 GLILVERDGQKKMVIGNKGSKIKTIGIEARQDMEAMFDAKVHLELWVKVKSGWADDERAL 128 >gi|213585347|ref|ZP_03367173.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 181 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 13/179 (7%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKTYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDT 63 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ K + ++LM + + S+I ++V VV+ R + +L ++ + +IL Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLA 189 +NK+D V+ E+A++ L F+ + F+ +SA G D + + + LP A Sbjct: 123 VNKVDNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIASIVRKHLPEA 176 >gi|226328140|ref|ZP_03803658.1| hypothetical protein PROPEN_02031 [Proteus penneri ATCC 35198] gi|225203844|gb|EEG86198.1| hypothetical protein PROPEN_02031 [Proteus penneri ATCC 35198] Length = 143 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 69/130 (53%) Query: 175 CDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW 234 D + + + LP A + D I+D +EI REKL L +E+PYS V E++ Sbjct: 3 VDTIAKIVRNCLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGEELPYSVTVEIEQF 62 Query: 235 EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKV 294 + G I +I VER QKK+++G G IK I EA+ ++ ++ E VHL L+VKV Sbjct: 63 VTNERGGYDIHGLILVEREGQKKMVIGNKGAKIKKIGTEARMDMEDLFENKVHLELWVKV 122 Query: 295 QKDWGHDPKC 304 + W D + Sbjct: 123 KAGWADDERA 132 >gi|46143333|ref|ZP_00135439.2| COG1159: GTPase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 175 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 1/154 (0%) Query: 152 AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEIT 211 E++ K F E +SA +G + + +L + + ++D +EI Sbjct: 15 TELSQKFDFAE-ILPISAQRGKNVHILQKIVRKSLREGVHHFPEEYVTDRSQRFMASEII 73 Query: 212 REKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTIS 271 REKL +E+PYS V E+++ + G+ I +I VER QKK+++G GQ IKTI Sbjct: 74 REKLMRFTGEELPYSVTVEIEQFKLNERGTYEINGLILVEREGQKKMVIGAKGQKIKTIG 133 Query: 272 LEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCC 305 +EA+ ++ + + VHL L+VKV+ W D + Sbjct: 134 MEARADMERLFDNKVHLELWVKVKAGWADDERAL 167 >gi|3415111|gb|AAC31604.1| Era GTPase B protein [Homo sapiens] Length = 282 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 7/145 (4%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +NSR V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 109 HHPDMPENSRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQ 168 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 ++ LDTPGI + K H L + L W +++ AD+V ++VD + N LL+ Sbjct: 169 VILLDTPGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRC 228 Query: 126 IAKRSS-RLILILNKIDCVKPERLL 149 + K S +L++NK+DC+K + +L Sbjct: 229 LTKYSQIPSVLVMNKVDCLKQKSVL 253 >gi|256052439|ref|XP_002569777.1| GTP-binding protein era [Schistosoma mansoni] gi|227284494|emb|CAY17142.1| GTP-binding protein era, putative [Schistosoma mansoni] Length = 446 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 88/312 (28%), Positives = 138/312 (44%), Gaps = 60/312 (19%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 VA++G N+GKS+LVN KV V+ K TTRS + Q+ F+D PG+ + Sbjct: 74 VAVIGCPNSGKSSLVNMLTKWKVCAVSGKAHTTRSKQTATYFQDNVQLAFVDLPGLVGRS 133 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAK-----RSSRLI 134 K S KL IR S I +D++ +V+D SH+E + +H+ EI K + Sbjct: 134 KASRFKLEKTFIRDPHSAIFDSDLILVVIDVSHKESREVLHE---EIVKALHFFNDKESV 190 Query: 135 LILNKIDCVKP--------------ERLLEQA----EIAN----------------KLVF 160 L+LNK++ + P ++LL Q E+ N K + Sbjct: 191 LVLNKVNKIFPHDSDHIDSMLETLKQQLLLQTASPEEVCNRRNRWLEITKSTKGVTKWLG 250 Query: 161 IEKTFMVSATKGHGCDDVLNYLCS-TLPLAPWVYSADQISDLPMFHFTAEITREKLFLH- 218 + FMVS+ G G D + ++L S +P W+ I+D E+ R ++ H Sbjct: 251 FSEVFMVSSFIGDGIDKLRDFLVSKAIPTRSWILPPTMITD----QEPTELIRMCVWSHC 306 Query: 219 ---LHKEIPYSSCVVTEKWEEKK----DGSILIRQVIYVERPSQKKIMLGKNGQNIKTIS 271 L +EIPYS ++ + ++ K D + I I + Q +LG G IK IS Sbjct: 307 LNKLQQEIPYSLHIIVDDCDKIKLDSGDDRVYIHVRIRCKNERQLLRVLGMKGNTIKEIS 366 Query: 272 LEAKKEIAEILE 283 K E+ + Sbjct: 367 SAVKLELMTMFR 378 >gi|119571534|gb|EAW51149.1| Era G-protein-like 1 (E. coli), isoform CRA_d [Homo sapiens] Length = 276 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 7/145 (4%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +NSR V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 103 HHPDMPENSRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQ 162 Query: 72 IVFLDTPGIFN-AKDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVN--IHDLLKE 125 ++ LDTPGI + K H L + L W +++ AD+V ++VD + N LL+ Sbjct: 163 VILLDTPGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRC 222 Query: 126 IAKRSS-RLILILNKIDCVKPERLL 149 + K S +L++NK+DC+K + +L Sbjct: 223 LTKYSQIPSVLVMNKVDCLKQKSVL 247 >gi|222640100|gb|EEE68232.1| hypothetical protein OsJ_26417 [Oryza sativa Japonica Group] Length = 365 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 34/218 (15%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ S V +VGA NAGKS+L N VG KV+ V+ K TT + G++++ +QI F D Sbjct: 143 EEDQMSLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQICFFD 202 Query: 77 TPGIFNAKDS--YHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 TPG+ + + +R+ +WS+I D++ ++ D +R LK ++K I + + Sbjct: 203 TPGLMLGHHGLPHRDVTVRVESAWSSINLYDLLIVLFDVNRHLKTPDTRVVKLIKRLGAE 262 Query: 133 L------ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + IL +NK+D V E L+ + K F +D+ Y Sbjct: 263 VNPNQKRILCMNKVDLV---------EDKKDLLKVAKEF----------EDLPAY--ERF 301 Query: 187 PLA---PWVYSADQISDLPMFHFTAEITREKLFLHLHK 221 PLA PW +++ M + E+ REK+ H+H+ Sbjct: 302 PLAVRRPWDEEPTTMTEEVMKTISLEVVREKMLDHIHQ 339 >gi|26553792|ref|NP_757726.1| GTP-binding protein Era-like protein [Mycoplasma penetrans HF-2] gi|26453799|dbj|BAC44130.1| GTP-binding protein Era homolog [Mycoplasma penetrans HF-2] Length = 270 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 134/266 (50%), Gaps = 21/266 (7%) Query: 49 IVTHKVQTTRSIVR-GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCL 107 I ++K QTTR+++ S ++ I F+DTPG+ N K+ + +++K +D+V Sbjct: 2 ISSNKPQTTRNMIEISYDSIEDCVINFIDTPGLHNPKNKLDLFLNSQVKASLKKSDLVLF 61 Query: 108 VVDSHRELKVNIHDLLKEIAK-RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTF- 165 + D R+ + LK + + ++L+LNK D L + EI N I K F Sbjct: 62 LFDLSRDFDSEDEECLKVLKDFNCNNVVLVLNKRD------LKSEEEIKNAKQSISKMFD 115 Query: 166 --MVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH-------FTAEITREKLF 216 V +DV + L +T+ Y ++ DL + F +E+ RE + Sbjct: 116 FTNVLEINSKSKEDV-SVLLNTIKEHIKEYEGEK-KDLELLKKEVSDKFFVSELIREIII 173 Query: 217 LHLHKEIPYSSCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAK 275 +EIPY ++ ++ + ++D ++L I I VE+ SQK I++GK G IK I++ + Sbjct: 174 NSFRQEIPYGVAILIDEMKYEQDKNLLTIVYSIIVEKESQKPIIIGKGGSMIKKINISLR 233 Query: 276 KEIAEILEQPVHLILFVKVQKDWGHD 301 + +++I + + +VKV+KDW ++ Sbjct: 234 ERLSDIYDCKIFTNSYVKVKKDWRNN 259 >gi|257486565|ref|ZP_05640606.1| GTP-binding protein Era [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 149 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 3/140 (2%) Query: 167 VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYS 226 +SA GH + + + + S LP + DQI+D AE+ REK+ L E+PY Sbjct: 4 ISAQHGHNLEALESLIASHLPENDHFFPEDQITDRSSRFLAAELVREKIMRQLGAELPYQ 63 Query: 227 SCVVTEKWEEKKDGSIL-IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQP 285 V E++ K+ G L I +I VER QKKI++G G IK I +A++++ + + Sbjct: 64 ITVEIEEF--KQQGRTLHIHALILVERDGQKKIIIGDKGDRIKRIGSDARRDMELLFDSK 121 Query: 286 VHLILFVKVQKDWGHDPKCC 305 V L L+VKV+ W D + Sbjct: 122 VMLNLWVKVKGGWSDDERAL 141 >gi|159155770|gb|AAI54965.1| LOC100127247 protein [Xenopus laevis] Length = 359 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%) Query: 162 EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHK 221 + FM+SA G + YL S W Y +D ++ I REKL +L + Sbjct: 225 QDVFMLSAVNGDEVQTLKRYLMSLAKPGEWEYHSDVVTSQSPQEICNNIIREKLLEYLPQ 284 Query: 222 EIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEI 281 E+PY+ +TE WEE G ++I Q + V++ + K+++G GQ IK I+LEA +++ + Sbjct: 285 EVPYNVSQITEVWEEGPGGELVILQTLLVQKENHVKLLIGVGGQMIKRIALEAGQDLMNV 344 Query: 282 LEQPVHLILFVKVQK 296 V + L VKV+K Sbjct: 345 FLCDVRVRLSVKVKK 359 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 93/141 (65%), Gaps = 9/141 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++GA NAGKSTL N+ +G KV V+ KV TTR +G+++E E+Q++ LDTPG+ A Sbjct: 4 IAIIGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQAQGVITEGETQLILLDTPGMVTAS 63 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIH-DLLKEIAK-RSSRLILIL 137 + + K ++ W +++ AD+V +++D S + +++ ++LK +++ ++ IL++ Sbjct: 64 KVKRHNLEKSLLHDPWQSMESADLVLVLLDVSDHWTRCSLNFEVLKCLSQYQNIPSILVM 123 Query: 138 NKIDCVKPERLLEQAEIANKL 158 NK+D +K + +L ++ N+L Sbjct: 124 NKVDLIKQKGIL--LDLTNQL 142 >gi|145296239|ref|YP_001139060.1| hypothetical protein cgR_2156 [Corynebacterium glutamicum R] gi|140846159|dbj|BAF55158.1| hypothetical protein [Corynebacterium glutamicum R] Length = 161 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 167 VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYS 226 VS+T G + ++ + LP P Y D I+D AE RE L E+P+S Sbjct: 16 VSSTSGENVETLIKVMTDLLPEGPKFYPDDHITDEDTNTRIAEAIREAALSGLKNELPHS 75 Query: 227 SCVVTEKW--EEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 V ++ + +++G + + +IYVER QK I++G GQ + I ++++I +IL Q Sbjct: 76 VAVEVDEILPDPERNGVLAVHAIIYVERVGQKDIIVGHKGQRLGRIIHTSRQDIIKILGQ 135 Query: 285 PVHLILFVKVQKDWGHDPKCC 305 V L L +KV K+W DPK Sbjct: 136 NVFLDLRIKVLKNWQSDPKAL 156 >gi|296273309|ref|YP_003655940.1| ribosome-associated GTPase EngA [Arcobacter nitrofigilis DSM 7299] gi|296097483|gb|ADG93433.1| ribosome-associated GTPase EngA [Arcobacter nitrofigilis DSM 7299] Length = 480 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 4/167 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG N GKS+L NR +++IV+ + TTR + + V + + + LDT GI Sbjct: 13 IALVGQPNVGKSSLFNRIAKQRIAIVSDQAGTTRDVRKHEVEIFDKKALMLDTGGIDETN 72 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D+ + R + T K ADI+ +VD + +L E+ +L L++NKID K Sbjct: 73 DAIFSTVKRKAVETAKEADIILFMVDGKKLPDDKDKELFYELQALGKKLALVVNKIDNDK 132 Query: 145 P-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ERL E E K E F +S + G D+ +++ + LP P Sbjct: 133 EKERLWEFFEFGIK---DENLFGISVSHNRGTKDLFDWIYNVLPELP 176 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 12/160 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 VA++G N GKS+++N +G + S+V+ TT V K+ I F+DT G+ Sbjct: 217 VAIIGRVNVGKSSILNALIGQERSVVSPIAGTTIDPVDESFEYKDKNITFVDTAGLRRRG 276 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILN 138 + + K + + ++ A++ +V+D+ EL DL ++IA + I++LN Sbjct: 277 SIEGIEKFALMRTKEMLEKANLALVVLDASSEL----VDLDEKIAGLVDEYGLGTIIVLN 332 Query: 139 KID--CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 K D +++ E K ++ VSA G D Sbjct: 333 KWDENMDTFQKIQETIRSKFKFLYYAPIIAVSAKTGRSID 372 >gi|332022772|gb|EGI63045.1| DNA ligase 1 [Acromyrmex echinatior] Length = 914 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 25/186 (13%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H ++ +S +A +GA N GKSTLVN+ + + V+ KV TT++ I E ++Q Sbjct: 43 HTSIHREAEKSLKIAFLGAPNVGKSTLVNQLIKRSICPVSCKVHTTQTKAHAIYCEGDTQ 102 Query: 72 IVFLDTPGI--------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVN 118 ++F+DTPG+ F DS+ K +++ ADI+ +V ++ ++ N Sbjct: 103 LIFMDTPGMVSLTESKKFKLADSFRKDQ----KTSLNMADIIGIVQNAENIYTRHKIDSN 158 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKT------FMVSATKG 172 I +LL E K+ +IL++NK+D +K + +L + L +K+ FM+SA G Sbjct: 159 ILELLTEDIKKKIPIILVINKVDRIKKKEIL--LDFVYTLTKSKKSPDFCDVFMISALTG 216 Query: 173 HGCDDV 178 G DD+ Sbjct: 217 DGVDDL 222 >gi|316977259|gb|EFV60385.1| GTP-binding protein Era [Trichinella spiralis] Length = 432 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 3/145 (2%) Query: 160 FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHL 219 + ++ FM+SA G G DDV N+L + A W Y + ++D +I R KL HL Sbjct: 285 YFDEVFMISALYGDGVDDVRNFLLNKTREAEWNYHSSVVADEDAVFLVKDIIRAKLLDHL 344 Query: 220 HKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIA 279 EIPYS + WE+ G++ IR + E KI++GK G IK I +A +++ Sbjct: 345 PHEIPYSLQLEIIVWEQDAAGNLCIRLNVICENSRWLKIIVGKGGDQIKKIVEDASQDLR 404 Query: 280 EIL--EQPVHLILFVKVQK-DWGHD 301 + E+ HL+ K+ K D G D Sbjct: 405 NLFMHEKDTHLVAVNKLSKSDSGAD 429 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 83/143 (58%), Gaps = 12/143 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + SRS VA++GA NAGKS L N +GA+V+ V+ K+ TT+ + + + SQ+VFLDT Sbjct: 49 EGSRSLRVAVLGAPNAGKSMLTNALLGARVNAVSKKINTTQKTMTTVFIDDVSQLVFLDT 108 Query: 78 PGIFNAKDS-YHKLMIRL------SWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK 128 PGI K S HKL L + + ++ +VC V D +R ++N + LL Sbjct: 109 PGIVTGKISKVHKLQSNLILDPENALHSAEYILVVCDVSDDYRSYRLNPRVQHLLCRYRH 168 Query: 129 RSSRLILILNKIDCVKPE-RLLE 150 S +LILNKID +K + +LLE Sbjct: 169 IPS--LLILNKIDLIKNKTKLLE 189 >gi|241151393|ref|XP_002406662.1| GTP-binding protein Era, putative [Ixodes scapularis] gi|215493874|gb|EEC03515.1| GTP-binding protein Era, putative [Ixodes scapularis] Length = 349 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 90/334 (26%), Positives = 148/334 (44%), Gaps = 70/334 (20%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + KV V+ KV TTR + + + ++QIVFLDTPGI + K Sbjct: 17 VAIVGEPNVGKSTLINELMRWKVCSVSKKVHTTRHNAKAVFIDGDTQIVFLDTPGIVDLK 76 Query: 85 DSY-HKL---MIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLIL 135 S H L M+ + +AD + ++VD+ + ++ N+ LL+ + S L Sbjct: 77 HSRKHHLGATMVVDPEHALLNADAIGVMVDASDHWRRQRIEENLLRLLRFNENKQS--FL 134 Query: 136 ILNKIDCVKPER-LLE----------------QAEIANKLVFIEKTFMVSATK--GHGCD 176 I+NK+D ++ +R LLE + + N + + F + K G + Sbjct: 135 IVNKVDLLRSKRQLLECIHSLTEGVVGGVPTRRQKPRNPKINADDLFSKTEAKLRGREIE 194 Query: 177 DVL---NYLCSTLPLAPW----------VYSADQISDLPMFHFTAE-------------- 209 D + ST P W + D + DL + A Sbjct: 195 DEAQGSSQESSTEPHNGWPNFSEVFMISALNNDGVDDLRSYLLQAARPSEWMYPKELVTD 254 Query: 210 ---------ITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQK--KI 258 I REK+ +L KE+PY+ + W+ D S ++ VI ++ + K Sbjct: 255 QNPHEIATMIVREKILNYLAKEVPYNLDISVTMWD--VDSSGVLHAVITIQGHQDRYIKY 312 Query: 259 MLGKNGQNIKTISLEAKKEIAEILEQPVHLILFV 292 +G G+ I+ I+ E+++++A I V L L V Sbjct: 313 AIGDKGKTIQKIAAESRQDLASIFHCDVSLKLVV 346 >gi|149053495|gb|EDM05312.1| Era (G-protein)-like 1 (E. coli), isoform CRA_c [Rattus norvegicus] Length = 254 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 85/141 (60%), Gaps = 11/141 (7%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q++ LDT Sbjct: 3 ENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQVILLDT 62 Query: 78 PGIFNA-KDSYHKLMIRL---SWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 PGI + K H L + L W +++ AD+V ++VD + L + L + ++ Sbjct: 63 PGIISPVKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRSRLSPQVLQCLTKFSQ 122 Query: 129 RSSRLILILNKIDCVKPERLL 149 S IL+LNK+DC+K + +L Sbjct: 123 VPS--ILVLNKVDCLKQKSVL 141 >gi|294637612|ref|ZP_06715891.1| GTP-binding protein Era [Edwardsiella tarda ATCC 23685] gi|291089167|gb|EFE21728.1| GTP-binding protein Era [Edwardsiella tarda ATCC 23685] Length = 176 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 15/175 (8%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI +E Q +++DTPG+ Sbjct: 9 GFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 68 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVN-IHDLLKEIAKRSSRLIL 135 K + ++LM R + S+I ++V VV+ E+ VN + DL +IL Sbjct: 69 EEKRAINRLMNRAASSSIGDVELVIFVVEGTHWTPDDEMVVNKLRDL-------KCPVIL 121 Query: 136 ILNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +NK+D V LL + ++ + +SA KG D + + LP A Sbjct: 122 AINKVDNVVDKTALLPHIQFLSQQMNFLDVVPISAEKGTNVDTIARIVRQRLPQA 176 >gi|159029809|emb|CAO90863.1| trmE [Microcystis aeruginosa PCC 7806] Length = 457 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 24/166 (14%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------ 73 RSG VA+VG N GKS+L+N + + +IVT TTR IV ESQ+V Sbjct: 220 RSGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDIV-------ESQLVVAGIPV 272 Query: 74 -FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 LDT GI +A D ++ + S T + AD+V L V + ++ + ++ R R Sbjct: 273 QVLDTAGIRSASDRVEQIGVERSRQTAQSADLVLLTVSAESGWTEEDEEIYRSVSDR--R 330 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 LIL++NKID V PE ++ AE IE+ +SA + G +D+ Sbjct: 331 LILVINKIDLVNPETVIYPAE-------IERVVKISAVQNQGIEDL 369 >gi|316977276|gb|EFV60399.1| GTP-binding protein Era [Trichinella spiralis] Length = 421 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 83/143 (58%), Gaps = 12/143 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + SRS VA++GA NAGKS L N +GA+V+ V+ K+ TT+ + + + SQ+VFLDT Sbjct: 49 EGSRSLRVAVLGAPNAGKSMLTNALLGARVNAVSKKINTTQKTMTTVFIDDVSQLVFLDT 108 Query: 78 PGIFNAKDS-YHKLMIRL------SWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAK 128 PGI K S HKL L + + ++ +VC V D +R ++N + LL Sbjct: 109 PGIVTGKISKVHKLQSNLILDPENALHSAEYILVVCDVSDDYRSYRLNPRVQHLLCRYRH 168 Query: 129 RSSRLILILNKIDCVKPE-RLLE 150 S +LILNKID +K + +LLE Sbjct: 169 IPS--LLILNKIDLIKNKTKLLE 189 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 68/133 (51%) Query: 160 FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHL 219 + ++ FM+SA G G DDV N+L + A W Y + ++D +I R KL HL Sbjct: 285 YFDEVFMISALYGDGVDDVRNFLLNKTREAEWNYHSSVVADEDAVFLVKDIIRAKLLDHL 344 Query: 220 HKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIA 279 EIPYS + WE+ G++ IR + E KI++GK G IK I +A +++ Sbjct: 345 PHEIPYSLQLEIIVWEQDAAGNLCIRLNVICENSRWLKIIVGKGGDQIKKIVEDASQDLR 404 Query: 280 EILEQPVHLILFV 292 + V LI+ V Sbjct: 405 NLFMHEVFLIIDV 417 >gi|116515098|ref|YP_802727.1| hypothetical protein BCc_162 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285506|sp|Q057R5|ERA_BUCCC RecName: Full=GTPase Era gi|116256952|gb|ABJ90634.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 297 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 131/259 (50%), Gaps = 11/259 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +Q + G + +VG TN GKSTL+N+ + + +SI++ K TT+ + GI + K Q Sbjct: 1 MQKKTFFGKIIIVGRTNVGKSTLLNKLIKSNISIISRKPNTTQKHIIGIYTYKLFQFEIF 60 Query: 76 DTPGIFNAKDSYHKLM----IRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKR 129 D+PG+ +D YH ++ IR +++ I +DI+ ++ + + +++ I + +++ K+ Sbjct: 61 DSPGL---QDKYHNIIEKKKIRDTFNLINESDIIIFLITNFIWKNIEIKILNFIQKKKKK 117 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +I ++ I + ++LL +K + ++SA K D +L + LP+A Sbjct: 118 YIIVINKIDLI--TEKKKLLPFILKISKFAPNSEIILISAKKKKFLDILLTNIKKKLPIA 175 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 Y + + + EI R+ L L+KE+ YS + + +I +I Sbjct: 176 NHKYISTKKTIYKEKFLITEIIRKTLMHLLYKELVYSFIISDVILNKNIKNKYIIFCIII 235 Query: 250 VERPSQKKIMLGKNGQNIK 268 V KKI++GK+G+ I+ Sbjct: 236 VNNKRHKKIIIGKHGEKIQ 254 >gi|242005276|ref|XP_002423496.1| GTP-binding protein era, putative [Pediculus humanus corporis] gi|212506600|gb|EEB10758.1| GTP-binding protein era, putative [Pediculus humanus corporis] Length = 314 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 25/241 (10%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G NAGKSTL+N+ + + + K TT+ ++ + +QIVF+DTPG+ K+ Sbjct: 6 AILGRPNAGKSTLINKILKMNICDSSSKSHTTKFPIKASFTHGNTQIVFVDTPGLVTKKE 65 Query: 86 SYHKLMIR---LSW--STIKHADIVCLVVD-SHRELKVNIHD-LLKEIA--KRSSRLILI 136 + K + + W + + D++ L+ + + + H L+++I K + LI Sbjct: 66 -FSKFELDDSIVGWEQNVLNEVDMIGLICELPYFNTNIKYHKTLIRKIRTLKNPKPIFLI 124 Query: 137 LNKIDCVKP------------ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYL 182 LNK D +K + L ++ E +L IE K F +SA K G D +++YL Sbjct: 125 LNKYDVIKQYSYVGNSIDNINKALEKENESDEELPKIEFSKIFHISALKNLGVDRIVDYL 184 Query: 183 CSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSI 242 S + W+ D + D P + R K+ L KE+PY E EE G + Sbjct: 185 LSEAKESDWILD-DNVCDKPPTVIITSLLRAKVMDLLPKEVPYQCSFEVEYLEENDYGEL 243 Query: 243 L 243 + Sbjct: 244 V 244 >gi|2981498|gb|AAC38439.1| GTP binding protein RgbA [Helicobacter pylori] Length = 174 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 1/139 (0%) Query: 167 VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYS 226 +SA K + L + L + W++ D +SD M EI RE LF L EIPY Sbjct: 25 LSAKKSQNLNAFLECISKHLSPSAWLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYE 84 Query: 227 SCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPV 286 S V+ +K+ E++ + +I VE+ SQKKI++GK G NIK I A+ ++ E+ E+ V Sbjct: 85 SDVMIDKFIEEERIDKVYAHII-VEKESQKKIVIGKYGVNIKRIGTNARLKMQEVGEKKV 143 Query: 287 HLILFVKVQKDWGHDPKCC 305 L L V QK W + K Sbjct: 144 FLNLQVIAQKSWSKEEKSL 162 >gi|257457196|ref|ZP_05622372.1| ribosome-associated GTPase EngA [Treponema vincentii ATCC 35580] gi|257445455|gb|EEV20522.1| ribosome-associated GTPase EngA [Treponema vincentii ATCC 35580] Length = 506 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +AL+G N GKSTL N SIV+ TTR +V G K Q + DT GI Sbjct: 240 IALIGKPNTGKSTLSNYLTKTSASIVSDIAGTTRDVVEGEFFYKGRQFIIQDTAGIRRKT 299 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++ADIV ++D+ L ++ + KR +I +LNK D Sbjct: 300 KVKEDIEYYSVVRAMKSLENADIVFHLIDAEEGLTEQDKKIIVQATKRGLGVIFVLNKWD 359 Query: 142 CVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLN 180 VK E+ AE K++F + + VSA KG G D+LN Sbjct: 360 LVKGEKKFRDAEQYIKIMFGKMEYAPIVPVSAQKGSGIPDLLN 402 >gi|319779149|ref|YP_004130062.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella equigenitalis MCE9] gi|317109173|gb|ADU91919.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella equigenitalis MCE9] Length = 443 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 17/209 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G VAL+G N GKS+L+N G +V+IVT TTR +V+ + I F+DT G Sbjct: 213 REGLKVALIGMPNVGKSSLLNALSGEEVAIVTDIAGTTRDVVKNFIHIDGVPIHFMDTAG 272 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +D ++ I+ S T++ AD+ ++ D E+ + ++L I + S + I I NK Sbjct: 273 LRETEDLVEQIGIKKSEKTLQDADVALILQDPREEISHKLQEVLSRIPQ-SVKTIYIQNK 331 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + +Q N ++++ SA G G D + L L +A W ++ + Sbjct: 332 IDLID-----KQPAQDNNVIYL------SAKTGAGLDLLKKAL---LEVAGWEGESEGLF 377 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSC 228 H A ++ K L + KEI YS Sbjct: 378 LARTRHMNA-LSEAKSQLEIAKEIAYSGL 405 >gi|149479196|ref|XP_001517412.1| PREDICTED: similar to ERA-W [Ornithorhynchus anatinus] Length = 354 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/97 (42%), Positives = 61/97 (62%), Gaps = 4/97 (4%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R VA++GA NAGKSTL N+ +G KV V+ KV TTR G+++E E+Q Sbjct: 25 HHPDMPENPRILRVAVLGAPNAGKSTLANQLLGRKVFPVSKKVHTTRCQALGVITEDETQ 84 Query: 72 IVFLDTPG-IFNAKDSYHKL---MIRLSWSTIKHADI 104 ++ LDTPG I AK H+L ++ W +++ AD+ Sbjct: 85 VILLDTPGFISPAKQKRHQLEPSLLNDPWRSVEGADL 121 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%) Query: 161 IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLH 220 ++ FM+SA G + +YL PW Y + ++ A I R KL +L Sbjct: 219 FQEIFMLSALSGDEVPTLKDYLLGQARPGPWEYHSSVLTSQTPQDICANIIRAKLLEYLP 278 Query: 221 KEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAE 280 +E+PY TE WEE G ++I Q + V + S KI++G GQ + ++ EA +++ + Sbjct: 279 QEVPYGVQQKTELWEEGPSGELVILQKLLVAKESHVKILIGHKGQLVAQMAQEATEDLTD 338 Query: 281 ILEQPVHLILFVKVQK 296 I VHL L V + K Sbjct: 339 IFLCDVHLRLSVSLLK 354 >gi|46577356|sp|Q7MVZ2|MNME_PORGI RecName: Full=tRNA modification GTPase mnmE Length = 474 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 3/157 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+N +G + +IV+ TTR + + F+DT G+ + Sbjct: 230 VAIVGTTNVGKSTLLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETE 289 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSR-LILILNKIDC 142 D+ L I S S IK ADI+ VVD R + N D +K I +R R LIL++NK + Sbjct: 290 DTIESLGIERSRSKIKEADIILAVVDGTRISEANQLDYIKSIWDEREERTLILLVNKSES 349 Query: 143 V-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + + +R+ + KL K +SA +G G D++ Sbjct: 350 LAEADRIGLSETLQTKLSTPTKPIFISAREGRGIDEL 386 >gi|34540645|ref|NP_905124.1| tRNA modification GTPase TrmE [Porphyromonas gingivalis W83] gi|34396959|gb|AAQ66023.1| thiophene and furan oxidation protein ThdF [Porphyromonas gingivalis W83] Length = 518 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 3/157 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+N +G + +IV+ TTR + + F+DT G+ + Sbjct: 274 VAIVGTTNVGKSTLLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETE 333 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSR-LILILNKIDC 142 D+ L I S S IK ADI+ VVD R + N D +K I +R R LIL++NK + Sbjct: 334 DTIESLGIERSRSKIKEADIILAVVDGTRISEANQLDYIKSIWDEREERTLILLVNKSES 393 Query: 143 V-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + + +R+ + KL K +SA +G G D++ Sbjct: 394 LAEADRIGLSETLQTKLSTPTKPIFISAREGRGIDEL 430 >gi|33332419|gb|AAQ11417.1| GTP-binding protein ERA [Yersinia enterocolitica] Length = 177 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 13/174 (7%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G +A+VG N GKSTL+N +G K+SI + K QTTR + GI +E Q +++DTPG+ Sbjct: 10 GFIAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHI 69 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 K + ++LM R + S+I ++V VV+ + E+ VN ++ ++L Sbjct: 70 EEKRAINRLMNRAASSSIGDVELVIFVVEGTNWTADDEMVVN------KLRSLQCPVLLA 123 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +NK+D V + +LL + ++ + +SA KG D + + + +P A Sbjct: 124 INKVDNVTDKTKLLPHIQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEA 177 >gi|77410244|ref|ZP_00786704.1| Era-like protein [Streptococcus agalactiae COH1] gi|77171148|gb|EAO74557.1| Era-like protein [Streptococcus agalactiae COH1] Length = 102 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 35/85 (41%), Positives = 56/85 (65%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA++G N GKST +N +G K++I++ K QTTR+ + GI + + QIVF+DTPGI Sbjct: 11 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGI 70 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIV 105 K + M+ ++ST++ + V Sbjct: 71 HKPKTALGDFMVESAYSTLREVETV 95 >gi|328480084|gb|EGF49071.1| GTPase Era [Lactobacillus rhamnosus MTCC 5462] Length = 127 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 65/124 (52%) Query: 91 MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE 150 M + + ST+ D + +V + + +L+++ + + LILNKID VKP+ LL Sbjct: 1 MDKAALSTLNQVDAILFMVAADEQKGAGDAYILRQLTEVKKPVYLILNKIDLVKPDDLLP 60 Query: 151 QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEI 210 E + F +SAT G+ D++LN L +TLP P Y DQ++D P + E+ Sbjct: 61 LIESYQHDYHFAQVFPISATMGNNVDELLNSLTATLPEGPQYYPEDQLTDHPEYFVVGEL 120 Query: 211 TREK 214 REK Sbjct: 121 IREK 124 >gi|50294530|ref|XP_449676.1| hypothetical protein [Candida glabrata CBS 138] gi|49528990|emb|CAG62652.1| unnamed protein product [Candida glabrata] Length = 487 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 4/163 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 + L+GA N GKS+L+N+ +SIV+ TTR IV IV+ ++ DT GI + Sbjct: 241 MTLLGAPNVGKSSLLNQIASDDISIVSDIPGTTRDIVSSIVNINGYKVNLFDTAGIRVDT 300 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K+ I ++ I +DI V+D + L +N+ DLLK S +I ++NKID V Sbjct: 301 TDPIEKMGIEKAFKRIGSSDICICVIDGTQPLPLNVLDLLKSSDLSGSEIIFVVNKIDIV 360 Query: 144 KPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 L Q I N L + F VS K G D+++ L Sbjct: 361 DDSCKLSKIQQYIGNNLTGCKICF-VSCLKSTGIDELVTVLTG 402 >gi|166367612|ref|YP_001659885.1| tRNA modification GTPase TrmE [Microcystis aeruginosa NIES-843] gi|205415798|sp|B0JVV0|MNME_MICAN RecName: Full=tRNA modification GTPase mnmE gi|166089985|dbj|BAG04693.1| thiophen and furan oxidation protein [Microcystis aeruginosa NIES-843] Length = 457 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 24/166 (14%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------ 73 RSG VA+VG N GKS+L+N + + +IVT TTR IV ESQ+V Sbjct: 220 RSGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDIV-------ESQLVVAGIPV 272 Query: 74 -FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 LDT GI +A D ++ + S T + AD+V L V + ++ + ++ R R Sbjct: 273 QVLDTAGIRSASDRVEQIGVERSRQTARSADLVLLTVSAESGWTQEDEEIYRSVSDR--R 330 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 LIL++NKID PE ++ AE I++ +SA + G +D+ Sbjct: 331 LILVINKIDLANPETVIYPAE-------IKRVVKLSAAQNQGIEDL 369 >gi|257095986|ref|YP_003169627.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048510|gb|ACV37698.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 458 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 11/167 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L+NR G +V+IVT TTR +VR + + + +DT G+ + + Sbjct: 231 VVLVGKPNVGKSSLLNRLAGDEVAIVTPLPGTTRDLVRSTLQVEGIPLHVIDTAGLRDTE 290 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D +L I +W I+ AD+V L+VD+ + +L + + +R + + NKID Sbjct: 291 DQIERLGIERTWREIERADVVVLLVDARTGVGDAERVILAKFPAKLAR-VFVYNKIDLTS 349 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 R E+ E A+ + M+SA G G + + L L +A W Sbjct: 350 --RAAERREEADGV-----AIMLSARSGEGSELLRQEL---LRIAGW 386 >gi|39998554|ref|NP_954505.1| tRNA modification GTPase TrmE [Geobacter sulfurreducens PCA] gi|81700815|sp|Q746Q3|MNME_GEOSL RecName: Full=tRNA modification GTPase mnmE gi|39985501|gb|AAR36855.1| tRNA modification GTPase TrmE [Geobacter sulfurreducens PCA] gi|298507496|gb|ADI86219.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34) modification GTPase [Geobacter sulfurreducens KN400] Length = 456 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 21 RSGCVALV-GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G L+ G N GKS+L+N + K +IVT TTR I+ +V+ + + +DT G Sbjct: 218 REGVAVLIAGKPNVGKSSLLNTLLQEKRAIVTSVPGTTRDIIEEVVNIRGLPLRMIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K +RL+ I AD+V LV+D R L + +L +A + RLIL+ NK Sbjct: 278 IRDTEDIVEKEGVRLTLEKIPEADLVLLVIDGSRPLDEDDRMILSALAGK--RLILVENK 335 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D L +I ++LV + + VS ++G G D++ + T Sbjct: 336 CD------LPRAVQIPDELVLMPRV-TVSTSRGDGIDELKESIFQTF 375 >gi|269122719|ref|YP_003310896.1| tRNA modification GTPase TrmE [Sebaldella termitidis ATCC 33386] gi|268616597|gb|ACZ10965.1| tRNA modification GTPase TrmE [Sebaldella termitidis ATCC 33386] Length = 456 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 72/119 (60%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKSTL+N + + +IVTH TTR I+ +++ + +V +DT GI +D Sbjct: 221 AIIGKPNVGKSTLLNSLLKEERAIVTHIPGTTRDIIEEVINVRGIPLVLVDTAGIRETED 280 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + S I+ +D++ V+D+ REL+ + H +++ I + + + I++LNKID + Sbjct: 281 LVENIGVEKSKEIIEKSDLILFVLDASRELEKDDHQIIELIRENNKKAIILLNKIDLSR 339 >gi|289548228|ref|YP_003473216.1| ribosome-associated GTPase EngA [Thermocrinis albus DSM 14484] gi|289181845|gb|ADC89089.1| ribosome-associated GTPase EngA [Thermocrinis albus DSM 14484] Length = 430 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 4/164 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G V +VG N GKSTL NR VG + +IV+ TR IV V K+ + + DT GI Sbjct: 2 GRVLIVGRPNVGKSTLFNRLVGRRKNIVSPIPGVTRDIVEAQVQWKDRKFIVADTGGIME 61 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + + I+ AD++ VVD + + ++ K + ++ L++NKID Sbjct: 62 KGDELTREVRDKVLKAIRKADVILFVVDGREGITASDQNIAKILYPYRDKVFLVVNKID- 120 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + LE+ + E+ F +SA G G D+L+ + L Sbjct: 121 ---NKSLEKNLYEFYSLGFERVFGISAEHGRGVGDLLDAVLPFL 161 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 19/179 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+ VG N GKS+L+N +G + +V+ TTR V + V +DT G+ Sbjct: 174 VSFVGRPNVGKSSLINAIMGEEKVLVSPVAGTTRDAVELPFEYGGERFVLVDTAGMRRPS 233 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 + + + S I+ +D+VCLV+D +H++ K+ I +R +++ Sbjct: 234 KVEYGVEFFSVGRSIKAIELSDVVCLVLDLTEGVTHQDQKIG-----GLIERRYRGCVIV 288 Query: 137 LNKIDCVK-PERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 NK+D VK P LE + I +L F++ SA + G +D+L + TL A +V Sbjct: 289 GNKVDLVKTPPSQLE-SYIRQRLHFLDFAPVVFTSAIQKRGVEDLLKTI--TLVYADYV 344 >gi|144227450|gb|AAZ44160.2| GTP-binding protein EngA [Mycoplasma hyopneumoniae J] Length = 433 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG +N GKSTL NR G K+SI TR + V+ + + +DT GI Sbjct: 4 LVALVGKSNVGKSTLFNRIAGKKISITNPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +++ L+ ++ ADI+ V+D +E+ H +L + K ++IL+ NK++ Sbjct: 64 NENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLENN 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K +I+ + EK F +SA GHG D L+ L Sbjct: 124 K------SFDISLFELGFEKVFPISALHGHGVGDFLDELVGNF 160 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 21/171 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L+G NAGKS+L+N +G SI++ TTR + G + +DT GI Sbjct: 173 LTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRKKS 232 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 +S ++ ++ AD+ +++D+ H +L++ + +R+ +IL+ Sbjct: 233 KLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAF-----ERNKPIILV 287 Query: 137 LNKIDCVKPERLLEQA---EIANKLVFIE--KTFMVSATKG---HGCDDVL 179 +NK D ++ + +Q +I K F++ +SA G H DV+ Sbjct: 288 INKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVI 338 >gi|71893425|ref|YP_278871.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae J] Length = 434 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG +N GKSTL NR G K+SI TR + V+ + + +DT GI Sbjct: 5 LVALVGKSNVGKSTLFNRIAGKKISITNPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +++ L+ ++ ADI+ V+D +E+ H +L + K ++IL+ NK++ Sbjct: 65 NENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLENN 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K +I+ + EK F +SA GHG D L+ L Sbjct: 125 K------SFDISLFELGFEKVFPISALHGHGVGDFLDELVGNF 161 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 27/174 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 + L+G NAGKS+L+N +G SI++ TTR + G + +DT GI Sbjct: 174 LTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRKKS 233 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRL 133 + D Y L ++ ++ AD+ +++D+ H +L++ + +R+ + Sbjct: 234 KLAESVDFYAFLR---AFRSLDQADLTLILLDACQDFHHFDLRIAGYAF-----ERNKPI 285 Query: 134 ILILNKIDCVKPERLLEQA---EIANKLVFIE--KTFMVSATKG---HGCDDVL 179 IL++NK D ++ + +Q +I K F++ +SA G H DV+ Sbjct: 286 ILVINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVI 339 >gi|258648360|ref|ZP_05735829.1| tRNA modification GTPase TrmE [Prevotella tannerae ATCC 51259] gi|260851527|gb|EEX71396.1| tRNA modification GTPase TrmE [Prevotella tannerae ATCC 51259] Length = 442 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 21/172 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TNAGKSTL+N VG + ++V+ TTR + IV+ + F+DT GI Sbjct: 213 VAIVGKTNAGKSTLLNALVGEERALVSDINGTTRDTIEDIVNIGGTLFRFIDTAGIRRTD 272 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR------SSRLILILN 138 D + I ++ TI ADI+ V+D+ + D+LKE+ ++ S +LI + N Sbjct: 273 DIVETMGIERTFQTIAKADIILWVIDAQ-----DSKDVLKELEQQMRQHCDSKKLICVFN 327 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 K D P+ + + + T +SA K G D + + L + +AP Sbjct: 328 KTDLQIPQYIPKGID----------TVSISAKKNIGMDKLRDLLKVSTDIAP 369 >gi|156101846|ref|XP_001616616.1| small GTP-binding protein domain containing protein [Plasmodium vivax SaI-1] gi|148805490|gb|EDL46889.1| small GTP-binding protein domain containing protein [Plasmodium vivax] Length = 499 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 63/101 (62%), Gaps = 5/101 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VAL+GA NAGKS+L+N + +S V+ K+ TTR ++GI ++ Q++F+D+PGI + Sbjct: 107 VALIGAPNAGKSSLLNSILNKTISAVSPKINTTRQDIKGIYTKDNVQLIFIDSPGIVPSH 166 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 K + K ++ +W + AD+V + D+ +K HD+L Sbjct: 167 KKKKFCKELVSYAWKGYEEADLVLFIADT---VKRPTHDVL 204 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 2/163 (1%) Query: 133 LILILNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP- 190 +IL+LNK+D C + +A+ + F +SA G +++L+Y+ Sbjct: 333 VILVLNKVDLCTHNKWANARAKEFMSNGNFDNIFFISAKYNKGVEELLDYIAKFKAKNQF 392 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 WVY D + L ++ L+ +K++PY W + S++I I V Sbjct: 393 WVYPKDSNTTLTKVQVVEQLINTYLYCWFNKDVPYRVKHHMLSWCVNLNNSLIIEYQIVV 452 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 + P K++ G + + I + ++ ++ Q V++ + VK Sbjct: 453 KSPKVAKMICGVHNKLIINMRRNVSYKLTQLWGQNVYVHIHVK 495 >gi|310779689|ref|YP_003968022.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926] gi|309749012|gb|ADO83674.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926] Length = 455 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 19/166 (11%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+L+N + + +IVTH TTR I+ +++ K ++ +DT GI D Sbjct: 223 AIVGKPNVGKSSLLNTILKEERAIVTHIAGTTRDIIEEVINLKGIPLILVDTAGIRTTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILNKIDC 142 + ++ S I AD+V VVD REL+ + +HD L + ++I ILNKID Sbjct: 283 VIENIGVKKSEDLIDKADLVLFVVDGSRELEEEDIKVHDQL-----NADKVIGILNKIDM 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGC----DDVLNYLCS 184 ER L+ + NK + K +SAT+ G D++ Y+ S Sbjct: 338 ---ERKLDLTPL-NK---VGKWIEISATENLGISNMEDEIYKYIIS 376 >gi|226328141|ref|ZP_03803659.1| hypothetical protein PROPEN_02032 [Proteus penneri ATCC 35198] gi|225203845|gb|EEG86199.1| hypothetical protein PROPEN_02032 [Proteus penneri ATCC 35198] Length = 170 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 91/162 (56%), Gaps = 5/162 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + G +A+VG N GKSTL+N+ +G KVSI + K QTTR + GI ++ Q +++D Sbjct: 3 EEQTYCGFIAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVD 62 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 TPG+ K + ++LM R + S+I ++V VV+ + +L ++ ++L Sbjct: 63 TPGLHIEEKRAINRLMNRAASSSIGDVELVIFVVEG-TNWTPDDEMVLNKLKSLRCPVLL 121 Query: 136 ILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 +NK+D V K + L ++ ++ F++ +SA K H C Sbjct: 122 AINKVDNVIDKTKLLPHIGFLSQQMDFLD-VVPISAEKRHEC 162 >gi|188994926|ref|YP_001929178.1| tRNA modification GTPase TrmE [Porphyromonas gingivalis ATCC 33277] gi|188594606|dbj|BAG33581.1| tRNA modification GTPase [Porphyromonas gingivalis ATCC 33277] Length = 518 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 3/157 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+N +G + +IV+ TTR + + F+DT G+ + Sbjct: 274 VAIVGTTNVGKSTLLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETE 333 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSR-LILILNKIDC 142 D+ L I S S IK ADI+ VVD R + N D +K I +R R +IL++NK + Sbjct: 334 DTIESLGIERSRSKIKEADIILAVVDGTRISEANQLDYIKSIWDEREERTVILLVNKSES 393 Query: 143 V-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + + +R+ + KL + +SA +G G D++ Sbjct: 394 LAEADRIGLSEALQTKLSTPTRPIFISAREGRGIDEL 430 >gi|42563304|ref|NP_177924.3| tRNA modification GTPase, putative [Arabidopsis thaliana] gi|51536472|gb|AAU05474.1| At1g78010 [Arabidopsis thaliana] gi|52421301|gb|AAU45220.1| At1g78010 [Arabidopsis thaliana] gi|332197936|gb|AEE36057.1| putative tRNA modification GTPase [Arabidopsis thaliana] Length = 560 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 1/164 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + ++ +IVT TTR +V V+ + I LDT GI Sbjct: 320 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRETN 379 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K+ + S + K AD++ + V + +LL++I + +IL++NKIDC Sbjct: 380 DIVEKIGVERSETAAKVADVIIMAVSAVEGWTEEDTELLRKI-QSDKPMILVMNKIDCAP 438 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 P + + K K+ SA G G +++ + + L L Sbjct: 439 PGSCDQLEDQRKKEEVFHKSVFTSAVTGQGIEELEDAILEILGL 482 >gi|144575266|gb|AAZ53447.2| GTP-binding protein EngA [Mycoplasma hyopneumoniae 7448] Length = 433 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG +N GKSTL NR G K+SI TR + V+ + + +DT GI Sbjct: 4 LVALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +++ L+ ++ ADI+ V+D +E+ H +L + K ++IL+ NK++ Sbjct: 64 NENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLENN 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K +I+ + EK F +SA GHG D L+ L Sbjct: 124 K------SFDISLFELGFEKVFPISALHGHGVGDFLDELVGNF 160 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 24/164 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 + L+G NAGKS+L+N +G SI++ TTR + G + +DT GI Sbjct: 173 LTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRKKS 232 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRL 133 + D Y L ++ ++ AD+ +++D+ H +L++ + +R+ + Sbjct: 233 KLAESVDFYAFLR---AFRSLDQADLTLILLDACHDFHHFDLRIAGYAF-----ERNKPI 284 Query: 134 ILILNKIDCVKPERLLEQA---EIANKLVFIE--KTFMVSATKG 172 IL++NK D ++ + +Q +I K F++ +SA G Sbjct: 285 ILVINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTG 328 >gi|72080412|ref|YP_287470.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae 7448] Length = 434 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG +N GKSTL NR G K+SI TR + V+ + + +DT GI Sbjct: 5 LVALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +++ L+ ++ ADI+ V+D +E+ H +L + K ++IL+ NK++ Sbjct: 65 NENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLENN 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K +I+ + EK F +SA GHG D L+ L Sbjct: 125 K------SFDISLFELGFEKVFPISALHGHGVGDFLDELVGNF 161 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 21/171 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L+G NAGKS+L+N +G SI++ TTR + G + +DT GI Sbjct: 174 LTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRKKS 233 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 +S ++ ++ AD+ +++D+ H +L++ + +R+ +IL+ Sbjct: 234 KLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFDLRIAGYAF-----ERNKPIILV 288 Query: 137 LNKIDCVKPERLLEQA---EIANKLVFIE--KTFMVSATKG---HGCDDVL 179 +NK D ++ + +Q +I K F++ +SA G H DV+ Sbjct: 289 INKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVI 339 >gi|221060018|ref|XP_002260654.1| GTPase [Plasmodium knowlesi strain H] gi|193810728|emb|CAQ42626.1| GTPase, putative [Plasmodium knowlesi strain H] Length = 499 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 68/108 (62%), Gaps = 2/108 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +AL+GA NAGKS+L+N + +S V+ K+ TTR ++GI ++ Q++F+D+PGI + Sbjct: 107 IALIGAPNAGKSSLLNSILNKTISAVSPKINTTRQDIKGIYTKDNVQLIFIDSPGIVPSH 166 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 K + K ++ +W + AD++ V D+ + ++ ++++ +A ++ Sbjct: 167 KKKKFCKELVSYAWKGYEEADLILFVADTVKRPTHDVFNIVRMLAPKN 214 Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust. Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 2/163 (1%) Query: 133 LILILNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP- 190 +IL+LNK+D C + +A+ + F +SA G +++L+Y+ Sbjct: 333 VILVLNKVDLCTNNKWANARAKEFMSNGNFDNIFFISAKYNKGIEELLDYITKFKAKNQF 392 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYV 250 WVY D + L ++ L+ +K++PY W D S++I I V Sbjct: 393 WVYPKDSNTTLTKVQVVEQLINTYLYCWFNKDVPYKVKHNMLSWCVNLDNSLIIEYQIVV 452 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 + K++ G + + I + ++ ++ Q V++ + VK Sbjct: 453 KSQKVAKMICGVHNKLIINMRRNVSYKLTQLWGQNVYVHIHVK 495 >gi|299469885|emb|CBN76739.1| MEra, mitochondrial Era GTPase [Ectocarpus siliculosus] Length = 402 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 55/98 (56%) Query: 165 FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIP 224 FMVSA GHG +DV+++L W++ D+ ++ EI RE L+ HL+KE+P Sbjct: 272 FMVSAKTGHGVEDVVDFLVHRARPGAWLFGPDETTNKDKRSRVKEIVREGLYKHLYKELP 331 Query: 225 YSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGK 262 Y + + D S+ + Q + ++R SQK I+LGK Sbjct: 332 YQITTHIRELSRRPDNSVSVLQELRLDRASQKPIVLGK 369 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 7/138 (5%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N R A+ G NAGKSTL+N VG KVS V+ K TTR G+++ +Q+ F DTP Sbjct: 52 NQRVLHAAVAGLPNAGKSTLLNYMVGDKVSAVSTKRHTTRENTLGVMTVGRTQVFFHDTP 111 Query: 79 GIFN--AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSR 132 G + +D Y + S I D+ L+VD+ +++ ++ LL+ + + Sbjct: 112 GFVSHEERDDYKPALSAESREAIAAVDLTLLLVDASKDVTKRGLRSLTGLLERVLRSRCE 171 Query: 133 LILILNKIDCVKPE-RLL 149 + L+LNK D V P RLL Sbjct: 172 VFLVLNKSDLVHPRHRLL 189 >gi|124809194|ref|XP_001348513.1| conserved protein, unknown function [Plasmodium falciparum 3D7] gi|23497408|gb|AAN36952.1| conserved protein, unknown function [Plasmodium falciparum 3D7] Length = 504 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 67/108 (62%), Gaps = 5/108 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N++ +AL+GA NAGKS+L+N + +S V+ K+ TT+ ++GI S+ Q++F+D+ Sbjct: 93 ENAQFLKIALIGAPNAGKSSLLNSILNKTISAVSPKINTTKYDIKGIYSKDNVQLIFIDS 152 Query: 78 PGIF--NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 PGI + K + K ++ +W + AD+V + D+ +K HD+L Sbjct: 153 PGIIPSHKKKKFCKELVTYAWKGYEEADLVLFIADA---VKRPTHDIL 197 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 133 LILILNKID-CVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCS-TLPLA 189 +IL+LNK+D C + +A E N +F + F +SA G +++LNY+ Sbjct: 338 VILVLNKVDLCTHNKWANARAKEYMNNGIF-DNIFFISAKYNKGIEELLNYIIKYKTKNQ 396 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 WVY D I+ L ++ ++ +K++PY W D S++I I Sbjct: 397 YWVYPKDAITTLSKVQIVEQLINTYIYCWFNKDVPYKVKHHMLSWCVNLDNSLIIEYQII 456 Query: 250 VERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 V+ K++ G + + I + ++ ++ + V++ + VK Sbjct: 457 VKSEKVAKMICGVHNKLIINMRKNVSYKLTKLWNKNVYVHIHVK 500 >gi|288818845|ref|YP_003433193.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|288788245|dbj|BAI69992.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|308752432|gb|ADO45915.1| ribosome-associated GTPase EngA [Hydrogenobacter thermophilus TK-6] Length = 432 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKSTL NR VG + SIV TR I+ S K+ + + DT GIF Sbjct: 5 VLIVGRPNVGKSTLFNRIVGRRKSIVHGIPGVTRDIIESEASWKDKKFMVADTGGIFEGG 64 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + + A ++ VVD + + + + ++ L++NKID Sbjct: 65 EEMSEKVEKQVKKALSEAQVILFVVDGREGITAGDEYIARMLYPYREKVFLVVNKIDS-- 122 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E+L + L F EK F VSA G G ++L+ L S LP P Sbjct: 123 -EKLQKNVYDFYALGF-EKVFPVSAQHGIGVAELLDALHSLLPDEP 166 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 5/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+ VG N GKS+L+N +G++ IV+ TTR V K + V +DT GI Sbjct: 176 VSFVGRPNVGKSSLINAILGSERVIVSEVAGTTRDAVEVPFEYKGKEFVLIDTAGIRRRP 235 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + S I+ +D+VCLV+D + + I +R +++ NK D Sbjct: 236 KVEYGVEFFAVGRSIKAIEMSDVVCLVLDISEGITNQDKKIAGLIERRFKGCVIVANKFD 295 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLN 180 VK + Q I +L F++ +V SA + G D+L+ Sbjct: 296 LVKATKEQAQDYIRKELHFLDFAPIVFTSAIRQEGIQDILD 336 >gi|54020024|ref|YP_115589.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae 232] gi|53987197|gb|AAV27398.1| putative GTP-binding protein [Mycoplasma hyopneumoniae 232] Length = 433 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 6/163 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG +N GKSTL NR G K+SI TR + V+ + + +DT GI Sbjct: 4 LVALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +++ L+ ++ ADI+ V+D +E+ H +L + K ++IL NK++ Sbjct: 64 NENFQDLIRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILAANKLENN 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K +I+ + EK F +SA GHG D L+ L Sbjct: 124 K------SFDISLFELGFEKVFPISALHGHGVGDFLDELVGNF 160 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 21/171 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L+G NAGKS+L+N +G SI++ TTR + G + +DT GI Sbjct: 173 LTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRKKS 232 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 +S ++ ++ AD+ +++D+ H +L++ + +R+ +IL+ Sbjct: 233 KLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAF-----ERNKPIILV 287 Query: 137 LNKIDCVKPERLLEQA---EIANKLVFIE--KTFMVSATKG---HGCDDVL 179 +NK D ++ + +Q +I K F++ +SA G H DV+ Sbjct: 288 INKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVI 338 >gi|255018412|ref|ZP_05290538.1| GTP-binding protein Era [Listeria monocytogenes FSL F2-515] Length = 68 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 47/60 (78%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +SG VA+VG N GKSTL+N +G K++I++ K QTTR+ V+G+ + ESQI+F+DTPGI Sbjct: 6 KSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGI 65 >gi|328952198|ref|YP_004369532.1| GTP-binding protein engA [Desulfobacca acetoxidans DSM 11109] gi|328452522|gb|AEB08351.1| GTP-binding protein engA [Desulfobacca acetoxidans DSM 11109] Length = 449 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G TN GKSTL NR ++V + TR + G V+ ++ + +DT G + Sbjct: 4 LVALIGRTNVGKSTLFNRLTRQSRALVDDQPGVTRDRLYGDVTWEDHAFLLIDTGGFGDT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D+ + + + AD+V +VD +E++ + ++ + + + ++L++NKID Sbjct: 64 EDALSSRVRQQAELAAGEADLVLFMVDGRQEIQPDDLEVAQYLRRSGKPVLLVINKIDGP 123 Query: 144 KPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 K E RL E + F +SA G G +L+ + LP AP Sbjct: 124 KQETRLPEFYRFG-----LTPLFPISAQHGLGVGSLLDAVVRYLPAAP 166 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+ +NR +G + IV+ TTR + + V +DT GI Sbjct: 177 VAVLGRPNVGKSSFINRVLGEERLIVSDTPGTTRDAIDAPLIWDNRPYVLIDTAGIRRRS 236 Query: 85 DSYHKLMIRLSWSTIK---HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + L + W ++ A++V L++D+ L +L IA ++ +NK D Sbjct: 237 RIHQNLERGMIWQALRALQRAEVVLLLLDAQEGLTEQDLRILNFIAVAGKGCLIGVNKWD 296 Query: 142 CVKPERLLEQAEI 154 V + ++A + Sbjct: 297 VVGKDSQTQKAAL 309 >gi|302339695|ref|YP_003804901.1| ribosome-associated GTPase EngA [Spirochaeta smaragdinae DSM 11293] gi|301636880|gb|ADK82307.1| ribosome-associated GTPase EngA [Spirochaeta smaragdinae DSM 11293] Length = 453 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 11/187 (5%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +GE + +D S S +AL+G N GKSTL NR +G VSIV+ TTR +V Sbjct: 174 LGEAQLLKSREAEAED-SFSLRLALLGKPNTGKSTLANRLIGRDVSIVSDLPGTTRDVVE 232 Query: 63 GIVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 S + LDT GI K ++ + + S I+ A +V L++D+ L Sbjct: 233 SSFSYRGMNCTILDTAGIRRKKKVGENIEYYSVNRALSAIEEAHVVLLMIDAQEGLSEQD 292 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFM------VSATKGH 173 + +I KR ++++LNK D ++ + QA I++++ F+ +SA G Sbjct: 293 KKITSQIIKRGRSVVMVLNKWDLLQEVPNMIQA-ISDRVRFLFPVLSFAPLVPISAKTGE 351 Query: 174 GCDDVLN 180 G D +L+ Sbjct: 352 GVDKLLS 358 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 7/159 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R +A+VG N GKSTL NR V + +I TR + + +DT Sbjct: 12 SGRRPLIAVVGRPNVGKSTLFNRLVRKRRAITDPTPGVTRDSIEHEWILDPYALTIVDTG 71 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 G DS + + S S +K AD++ L++D ++ ++ + S +L+L++N Sbjct: 72 GFKVEGDSLDEQVKEKSVSYLKRADLILLLMDVT-DVTGEDETFIEYLRPYSDKLLLVVN 130 Query: 139 KIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCD 176 K+D + E + N L + + + +SA G G D Sbjct: 131 KVDNREREN-----GVWNYLSYGLGEPIAISAAHGLGID 164 >gi|203284418|ref|YP_002222158.1| GTP-binding protein [Borrelia duttonii Ly] gi|203287952|ref|YP_002222967.1| GTP-binding protein [Borrelia recurrentis A1] gi|201083861|gb|ACH93452.1| GTP-binding protein [Borrelia duttonii Ly] gi|201085172|gb|ACH94746.1| GTP-binding protein [Borrelia recurrentis A1] Length = 440 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V +VG N GKSTL N+ + + SI TR +VR I + +D G Sbjct: 13 SVLIVGRPNVGKSTLFNKLLSSNRSITNEVYGVTRDLVREICKINSYKFYLIDAGGFTLL 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 KD ++++ + D++ LV+D + E+ + ++L+ + K S +++LILNK+D Sbjct: 73 KDELSQVVVNKVIGLLDSVDLILLVLDVN-EILLEDYELIDRLRKYSDKVVLILNKVDSS 131 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L + + KL F K+F+VSAT G G +D+ +L Sbjct: 132 HKEVLAYEFQ---KLGF-RKSFLVSATHGKGINDLRIFL 166 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + ++G N+GKSTLVN G +VSIV+ TTR ++ +DT GI Sbjct: 183 IGIIGKPNSGKSTLVNFLSGDEVSIVSSMAGTTRDFIKAKFQRNSKTFELIDTAGI 238 >gi|82595196|ref|XP_725747.1| GTP-binding protein Era [Plasmodium yoelii yoelii str. 17XNL] gi|23480866|gb|EAA17312.1| GTP-binding protein Era [Plasmodium yoelii yoelii] Length = 440 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +AL+GA N+GKS+L+N + +S V+ K+ TT+ ++GI ++ Q++F+D+PGI + Sbjct: 98 IALIGAPNSGKSSLLNTILNKTISSVSPKINTTKQDIKGIYTKDNVQLIFIDSPGIIPSH 157 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 K + K ++ +W + AD+V VVD+ +K HD++ Sbjct: 158 KKKKFCKELVNYAWKGYEEADLVLFVVDT---VKRPTHDII 195 >gi|237736115|ref|ZP_04566596.1| thiophene and furan oxidation protein ThdF [Fusobacterium mortiferum ATCC 9817] gi|229421826|gb|EEO36873.1| thiophene and furan oxidation protein ThdF [Fusobacterium mortiferum ATCC 9817] Length = 456 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 19/212 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+L+N + + +IVTH TTR ++ +V+ K ++ +DT GI D Sbjct: 224 AIVGKPNVGKSSLLNSVLREERAIVTHIPGTTRDVIEEVVNLKGIPLILVDTAGIRKTDD 283 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I++AD++ V+D REL+ + IH+ + S ++I ILNKID Sbjct: 284 IVENIGVEKSKKMIENADLILFVIDGSRELEEEDIKIHESI-----NSEKVIGILNKID- 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 +E+ +KL I+ +SA K G D++ + + + S+ +I+ Sbjct: 338 ------MERKVDLSKLTKIKNWIEISAMKNIGIDEMEDKIYHHIVDGNVEDSSQKITITN 391 Query: 203 MFHFTA-EITR---EKLFLHLHKEIPYSSCVV 230 + H +A E T+ E +F +H +P V Sbjct: 392 VRHKSALEKTKQYVENIFDTIHAGLPMDLMAV 423 >gi|68063181|ref|XP_673600.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56491569|emb|CAI02319.1| conserved hypothetical protein [Plasmodium berghei] Length = 394 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 65/101 (64%), Gaps = 5/101 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--N 82 +AL+GA N+GKS+L+N + +S V+ K+ TT+ ++GI +++ Q++F+D+PGI + Sbjct: 98 IALIGAPNSGKSSLLNTILNKTISSVSPKINTTKQDIKGIYTKENVQLIFIDSPGIIPSH 157 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 K + K ++ +W + AD++ VVD+ +K HD++ Sbjct: 158 KKKKFCKELVNYAWKGYEEADLILFVVDT---VKRPTHDII 195 >gi|149923268|ref|ZP_01911678.1| GTP-binding protein EngA [Plesiocystis pacifica SIR-1] gi|149815865|gb|EDM75385.1| GTP-binding protein EngA [Plesiocystis pacifica SIR-1] Length = 487 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 12/195 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ 55 M EI F E + D+ G VA++G N GKSTL NR VG + +IV + Sbjct: 1 MSEIEFEGETVELSADDDPRGASAASAPLVAIIGRPNVGKSTLFNRLVGRREAIVEDRPG 60 Query: 56 TTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRE 114 TR + G+ S + + +DT G+ + D+ IR ++ AD++ VVD+ Sbjct: 61 VTRDRLYGVASWEGRHFLVVDTGGVDPSLDTGLPGHIRSQAEVAMEEADLILFVVDAKEG 120 Query: 115 LKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 D+ E+ + ++L NK D P R E A A + + + VSA G G Sbjct: 121 ATAVDIDIAAELRRSGKPVMLAANKADS--PSR--ELAAAAMHELGLGEVHAVSAAHGRG 176 Query: 175 CDDVLNYLCSTLPLA 189 D + L LP A Sbjct: 177 VGDFCDALLERLPAA 191 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 7/160 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A +G NAGKSTLVN + + IV+ TTR V K+ +V DT G+ K Sbjct: 205 IAFIGRPNAGKSTLVNTLLEEQRVIVSDTPGTTRDPVYLPFRYKDRDLVLTDTAGLRRRK 264 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + KL S T++ +V LV+D+ + + L + +R +++ L+K D Sbjct: 265 QIARAMEKLAAIKSIRTMERTQVVVLVIDASQGVTDQDQRLARMAFERGKGVVVALHKWD 324 Query: 142 CVKPERLLEQAEIA---NKLVFIEKTFMV-SATKGHGCDD 177 ++ + L + +A L F+E +++ S+ G G D+ Sbjct: 325 LIRRDGKLAKDTLAYTQEALGFLENPYIIKSSVIGEGRDE 364 >gi|124024977|ref|YP_001014093.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL1A] gi|166234805|sp|A2C018|MNME_PROM1 RecName: Full=tRNA modification GTPase mnmE gi|123960045|gb|ABM74828.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. NATL1A] Length = 464 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 5/163 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG VAL G N GKS+L+NR + +IVT TTR I+ + + + F+DT G Sbjct: 224 RSGLKVALAGKPNVGKSSLMNRLSKQEKAIVTDLPGTTRDILESEIVLEGIPVTFIDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + KD K+ I + T+ HAD++ L+ D +LK++ L+++ NK Sbjct: 284 LRDTKDIIEKIGISRTKKTLIHADLIILIFDYSSGWTNEDESILKQLPVNIP-LLIVGNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D + + ++ ++ E ++SA G+G DD++NYL Sbjct: 343 SDLMNDQSF---EKVPKYILKKENLVILSAKTGNGEDDLINYL 382 >gi|72383392|ref|YP_292747.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL2A] gi|123620473|sp|Q46HI4|MNME_PROMT RecName: Full=tRNA modification GTPase mnmE gi|72003242|gb|AAZ59044.1| tRNA modification GTPase trmE [Prochlorococcus marinus str. NATL2A] Length = 464 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG VAL G N GKS+L+NR + +IVT TTR I+ + + + F+DT G Sbjct: 224 RSGLKVALTGKPNVGKSSLMNRLSKQEKAIVTDLPGTTRDILESEIILEGIPVTFIDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + KD K+ I + T+ HAD++ L+ D +LK++ L+++ NK Sbjct: 284 LRDTKDIIEKIGISRTKKTLIHADLIILIFDYSSGWTNEDESILKQLPINIP-LLIVGNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D + ++ ++ E ++SA G+G DD++NYL Sbjct: 343 SDLTNDQSF---EKVPKYILKKENLVIISAKTGNGEDDLINYL 382 >gi|28379977|ref|NP_786869.1| tRNA modification GTPase TrmE [Lactobacillus plantarum WCFS1] gi|300769099|ref|ZP_07078988.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308182180|ref|YP_003926308.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ST-III] gi|32171799|sp|Q88RX5|MNME_LACPL RecName: Full=tRNA modification GTPase mnmE gi|28272818|emb|CAD65747.1| thiophene and furan oxidation protein ThdF [Lactobacillus plantarum WCFS1] gi|300493339|gb|EFK28518.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047671|gb|ADO00215.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ST-III] Length = 463 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 7/156 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATAIIGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I AD+V LV+D+ + L +LL+E + S+ I+ILNK Sbjct: 282 IRDTEDKVEKIGVERSRKAIGAADLVLLVLDNSQPLTAEDRELLQETDQ--SKRIVILNK 339 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 D P R L+QAE+A +LV + +S + G Sbjct: 340 TDL--PAR-LDQAELA-QLVDLSDVLSMSVLEQSGV 371 >gi|254558111|ref|YP_003064528.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1] gi|254047038|gb|ACT63831.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1] Length = 463 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 7/156 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATAIIGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I AD+V LV+D+ + L +LL+E + S+ I+ILNK Sbjct: 282 IRDTEDKVEKIGVERSRKAIGAADLVLLVLDNSQPLTAEDRELLQETDQ--SKRIVILNK 339 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 D P R L+QAE+A +LV + +S + G Sbjct: 340 TDL--PAR-LDQAELA-QLVDLSDVLSMSVLEQSGV 371 >gi|15639676|ref|NP_219126.1| GTP-binding protein EngA [Treponema pallidum subsp. pallidum str. Nichols] gi|189025914|ref|YP_001933686.1| GTP-binding protein EngA [Treponema pallidum subsp. pallidum SS14] gi|8134438|sp|P96128|DER_TREPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238689339|sp|B2S3S8|DER_TREPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1732241|gb|AAB38705.1| GTP-binding protein [Treponema pallidum] gi|3322993|gb|AAC65658.1| GTP-binding protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018489|gb|ACD71107.1| GTP-binding protein [Treponema pallidum subsp. pallidum SS14] gi|291060055|gb|ADD72790.1| ribosome-associated GTPase EngA [Treponema pallidum subsp. pallidum str. Chicago] Length = 460 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 10/168 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N + VS+V + TTR +V G V K+ + + DT GI + Sbjct: 200 LAIVGKPNTGKSTLMNYLMRRTVSLVCDRAGTTRDVVTGHVEFKQYKFIIADTAGIRKRQ 259 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + +IR + S + DIV +VD+ ++ +I+KR+ +I +LNK Sbjct: 260 KVYESIEYYSVIR-AISILNAVDIVLYIVDARDGFSEQDKKIVSQISKRNLGVIFLLNKW 318 Query: 141 DCVKPE-RLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLC 183 D ++ L+ + + + F + F+ VSA GHG D L+ +C Sbjct: 319 DLLEGSTSLIAKKKRDVRTAFGKMNFVPVVPVSAKTGHGISDALHCVC 366 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 6/93 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG--IFN 82 V +VG N GKSTL NR +G + SI ++ TR + V + + +DT G +F+ Sbjct: 23 VVIVGRPNVGKSTLFNRLLGRRRSITSNTSGVTRDSIEETVILRGFPLRLVDTSGFTVFS 82 Query: 83 AKDSYHK----LMIRLSWSTIKHADIVCLVVDS 111 K + + L++ ++ +I+ AD + LV+D Sbjct: 83 EKKASRQHIDTLVLEQTYKSIQCADKILLVLDG 115 >gi|313892276|ref|ZP_07825869.1| tRNA modification GTPase TrmE [Dialister microaerophilus UPII 345-E] gi|313119414|gb|EFR42613.1| tRNA modification GTPase TrmE [Dialister microaerophilus UPII 345-E] Length = 459 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 77/130 (59%), Gaps = 5/130 (3%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 ++D R+ A+VG NAGKS+L+N + + +IVT TTR + +S ++ Sbjct: 217 IIKDGIRT---AIVGKPNAGKSSLLNTLLQEERAIVTDIPGTTRDTIEESISLSGIPLIL 273 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DT GI ++ K+ I + +++ AD+V +V+DS +EL+ + LL+EI+KR + + Sbjct: 274 MDTAGIRKTENKVEKIGIERARESMEKADLVLMVIDSSKELEESDKKLLEEISKRKA--V 331 Query: 135 LILNKIDCVK 144 ++LNK D K Sbjct: 332 VLLNKSDLEK 341 >gi|295696375|ref|YP_003589613.1| ribosome-associated GTPase EngA [Bacillus tusciae DSM 2912] gi|295411977|gb|ADG06469.1| ribosome-associated GTPase EngA [Bacillus tusciae DSM 2912] Length = 451 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 5/167 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 G VA+VG N GKSTL NR VG +++IV K TR + + S +DT G+ Sbjct: 10 GGLVAIVGRPNVGKSTLFNRIVGGRIAIVEDKPGVTRDRLYALASWNGRGFRIIDTGGLD 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F D+ K + ++ AD V +VD + ++ + + ++L +NK+ Sbjct: 70 FGGSDAIVKSIRAQVELALEEADAVIFLVDGISGITPADEEIAGRLRRAGKPVVLAVNKL 129 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D P R++ Q E + + F +SA G G D+L+ + LP Sbjct: 130 D--NPNRMIAQYEFFR--LGLGDPFPISAEHGLGIGDLLDAVVRRLP 172 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 12/169 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+LVNR +G + +V+ TTR V + + + +DT G+ Sbjct: 186 VAVIGRPNVGKSSLVNRLLGEERVLVSEIPGTTRDAVDTLFEREGHSFILIDTAGLRKRG 245 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I +D+ LV+D + + + + +++NK D Sbjct: 246 RVWEDTEKYSVLRALRAIDRSDVCLLVIDGKQGIAEQDKRVAGYAVDAGRAVAVVVNKWD 305 Query: 142 CVKPE-----RLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLC 183 V+ + R+ E EI + F+ VSA G +L+ + Sbjct: 306 LVEKDDKTAVRMTE--EIRQEFAFMTWAPVVFVSAKTGQRVGRILDLVV 352 >gi|257127029|ref|YP_003165143.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b] gi|257050968|gb|ACV40152.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b] Length = 455 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 71/118 (60%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKSTL+N + + +IVTH TTR ++ I++ K +V +DT GI D Sbjct: 223 IVGKPNVGKSTLLNALLHEERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDI 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + S I+ AD+V LV+D+ ++L+ +++ +I + + ++I++LNKID K Sbjct: 283 VENIGVEKSKQFIEKADLVLLVLDASKKLETEDIEVITKIKENNKKVIVLLNKIDLNK 340 >gi|329121701|ref|ZP_08250318.1| tRNA modification GTPase TrmE [Dialister micraerophilus DSM 19965] gi|327468171|gb|EGF13657.1| tRNA modification GTPase TrmE [Dialister micraerophilus DSM 19965] Length = 459 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 77/130 (59%), Gaps = 5/130 (3%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 ++D R+ A+VG NAGKS+L+N + + +IVT TTR + +S ++ Sbjct: 217 IIKDGIRT---AIVGKPNAGKSSLLNTLLQEERAIVTDIPGTTRDTIEESISLSGIPLIL 273 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DT GI ++ K+ I + +++ AD+V +V+DS +EL+ + LL+EI+KR + + Sbjct: 274 MDTAGIRKTENKVEKIGIERARESMEKADLVLMVIDSSKELEESDKKLLEEISKRKA--V 331 Query: 135 LILNKIDCVK 144 ++LNK D K Sbjct: 332 VLLNKSDLEK 341 >gi|227488997|ref|ZP_03919313.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51867] gi|227091073|gb|EEI26385.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51867] Length = 537 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR V + + DT G Sbjct: 98 TVAIVGRPNVGKSSLVNRFLGRREAVVEDTPGVTRDRVSYLAEWNGQRFWVQDTGGWDPD 157 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + R + ++ AD++ +VVD++ + + + + + + +IL+ NK+D Sbjct: 158 AKGIHAAIARQAEVAMETADVIVMVVDTNVGITASDEVMARNLQRSDVPVILVANKVDS- 216 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P++ E AE + ++ + VSA G G DVL+ + P P Sbjct: 217 -PKQEAETAEFWG--LGLDYPYPVSAQHGKGGADVLDQILELFPDEP 260 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ + S+V + TT V +V + F+DT G + Sbjct: 272 VALVGKPNVGKSSLLNKLSNEERSVVDNVAGTTVDPVDSLVQLEGGLWKFIDTAGLRRKV 331 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA + +R + I A++ L++D+ + LL I + L++ NK Sbjct: 332 KNASGHEYYASLRTK-TAIDAAEVCILIIDASEPISEQDQKLLGMIVESGKALVIAFNKW 390 Query: 141 DCVKPER 147 D V +R Sbjct: 391 DLVDEDR 397 >gi|71029562|ref|XP_764424.1| hypothetical protein [Theileria parva strain Muguga] gi|68351378|gb|EAN32141.1| hypothetical protein, conserved [Theileria parva] Length = 276 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 68/108 (62%), Gaps = 2/108 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VAL+G N+GKS+ +N + + +S V+ KV TTR ++GI++ QIV +D+PGI + Sbjct: 14 VALLGLPNSGKSSFLNSILNSTISAVSPKVNTTREDIKGILTIDNCQIVLIDSPGIIASH 73 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + + K ++R +W AD+ +VD+ + K +++++L+ ++ ++ Sbjct: 74 KRRKFCKDLVRTAWKGFDEADLCLFLVDAVKRPKSDLYNILRVLSGKN 121 >gi|70922689|ref|XP_734471.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56507242|emb|CAH84539.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 216 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++GA N+GKS+L+N + +S V+ K+ TT+ ++GI ++ Q++F+D+PGI + Sbjct: 15 VAIIGAPNSGKSSLLNTILDKTISSVSPKINTTKQDIKGIYTKDNVQLIFIDSPGIIPSH 74 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 K + K ++ +W + AD+V VVD+ +K HD++ Sbjct: 75 KKKKFCKELVNYAWKGYEEADLVLFVVDT---VKRPTHDII 112 >gi|6573766|gb|AAF17686.1|AC009243_13 F28K19.23 [Arabidopsis thaliana] Length = 613 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 16/180 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + ++ +IVT TTR +V V+ + I LDT GI Sbjct: 356 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRETN 415 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS----------------HRELKVNIHDLLKEIAK 128 D K+ + S + K AD++ + V + ++ V+ +DL + Sbjct: 416 DIVEKIGVERSETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKVGVSFYDLFGGLLY 475 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +IL++NKIDC P + + K K+ SA G G +++ + + L L Sbjct: 476 LKQPMILVMNKIDCAPPGSCDQLEDQRKKEEVFHKSVFTSAVTGQGIEELEDAILEILGL 535 >gi|227542010|ref|ZP_03972059.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51866] gi|227182225|gb|EEI63197.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51866] Length = 537 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR V + + DT G Sbjct: 98 TVAVVGRPNVGKSSLVNRFLGRREAVVEDTPGVTRDRVSYLAEWNGQRFWVQDTGGWDPD 157 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + R + ++ AD++ +VVD++ + + + + + + +IL+ NK+D Sbjct: 158 AKGIHAAIARQAEVAMETADVIVMVVDTNVGITASDEVMARNLQRSDVPVILVANKVDS- 216 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P++ E AE + ++ + VSA G G DVL+ + P P Sbjct: 217 -PKQEAETAEFWG--LGLDYPYPVSAQHGKGGADVLDQILELFPDEP 260 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ + S+V + TT V +V + F+DT G + Sbjct: 272 VALVGKPNVGKSSLLNKLSNEERSVVDNVAGTTVDPVDSLVQLEGGLWKFIDTAGLRRKV 331 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA + +R + I A++ L++D+ + LL I + L++ NK Sbjct: 332 KNASGHEYYASLRTK-TAIDAAEVCILIIDASEPISEQDQKLLGMIVESGKALVIAFNKW 390 Query: 141 DCVKPER 147 D V +R Sbjct: 391 DLVDEDR 397 >gi|154338646|ref|XP_001565545.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062597|emb|CAM39039.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 383 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 123/268 (45%), Gaps = 22/268 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 A +G NAGK++LVN V + V V+++ +T+ + + + ++Q++ LDTPGI + Sbjct: 95 AAFLGPQNAGKTSLVNSLVLSNVGAVSNRYGSTKDWTKAVATVHDTQLLLLDTPGIV-PR 153 Query: 85 DSYHKLMIRLSWSTIKH------ADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRL 133 D+ + + + T K AD+V L + +E KV ++++ A R + Sbjct: 154 DT-QRTRRKFASGTAKAYDALFVADLVVLALPVGVGFVEKEHKVVAREVVRRAAGRELPV 212 Query: 134 ILILNKIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++ + +D V+ R E + ++ + + T VS G G ++ + LC Sbjct: 213 VIAMTMMDKVQTPRHRELYFAMRTDLESLGLPTAATHEVSVKGGSGLVELKDCLCQYARP 272 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 W + + +DL + AE+ R+ L EIP+ W K+ G+ + + Sbjct: 273 GAWEHYRRETTDLNLPQRVAELLRQTFMELLPHEIPHCMRHRVLGWTRKESGTTEVIVEV 332 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKK 276 + +RP+ G+ ++ I L A++ Sbjct: 333 FFDRPAYMFTFYGR----LEAICLRAQQ 356 >gi|261856783|ref|YP_003264066.1| ribosome-associated GTPase EngA [Halothiobacillus neapolitanus c2] gi|261837252|gb|ACX97019.1| ribosome-associated GTPase EngA [Halothiobacillus neapolitanus c2] Length = 567 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V TR G + + +DT G+ Sbjct: 4 VIALVGRPNVGKSTLFNQMTRSRAALVADYAGLTRDRQYGSAEHEGRDFIVIDTGGLTGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + LM +W+ I+ AD V +VD+ L V ++ +++ + S + L++NK+D V Sbjct: 64 RGGIEALMQDQAWAAIEEADCVVFMVDARAGLTVADQEIAEKLRRSSKPIQLVVNKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC----DDVLNYLCSTL 186 + L QAE A +L E F +A+ G G D VL L L Sbjct: 124 --DESLVQAEFA-RLGLGEPVF-TTASHGRGISTLWDAVLVRLADKL 166 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VAL+G N GKSTL NR +G + + TTR + + +DT G+ Sbjct: 182 VALIGRPNVGKSTLTNRLLGEDRVLAFDQPGTTRDSIYIPFEQNGKAYTLIDTAGVRRRA 241 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K I + I+ A++V LV D+H + LL I R L++ +NK D Sbjct: 242 RVNEMIEKFSIVKTLQAIEAANVVILVCDAHEGISEQDQHLLGFIHDRGRALVIAINKWD 301 Query: 142 CVKPERLLE-QAEIANKLVFIEKTFM--VSATKGHGC 175 + E + +I +L FI M +SA G G Sbjct: 302 NLTDYARAEVKRQIDLRLDFINYAEMHFISALHGTGV 338 >gi|260437683|ref|ZP_05791499.1| tRNA modification GTPase TrmE [Butyrivibrio crossotus DSM 2876] gi|292809909|gb|EFF69114.1| tRNA modification GTPase TrmE [Butyrivibrio crossotus DSM 2876] Length = 456 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 88/157 (56%), Gaps = 7/157 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+++N G + +IVT TTR I+ ++ + +DT GI N +D Sbjct: 224 ILGKPNAGKSSILNILSGRERAIVTDIEGTTRDIIEEQINLNGITLNLIDTAGIRNTEDI 283 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + + + +T + AD++ VVDS R+L N +++LK I ++++ +++LNK D Sbjct: 284 VENIGVNKAKATAEDADLIMYVVDSSRKLDENDYEILKLI--KNNKAVVLLNKSDLEPVI 341 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + + E+ N + F+VSA + G +++ +Y+ Sbjct: 342 TVDKMKELTNN-----RVFLVSAKENTGLEELTDYIV 373 >gi|322492339|emb|CBZ27613.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 529 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/268 (23%), Positives = 123/268 (45%), Gaps = 22/268 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G NAGK++LVN + V V+++ +T+ + + + ++Q++ LDTPGI + Sbjct: 241 VAFLGPQNAGKTSLVNSLALSNVGAVSNRYGSTKDWTKAVATVHDTQLLLLDTPGIV-PR 299 Query: 85 DSYHKLMIRLSWSTIKH------ADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRL 133 D+ ++ + + T K AD+V L + +E KV ++++ A R + Sbjct: 300 DT-QRVRRKFASGTAKAYDALFVADLVVLALPVGVGFVEKEHKVVATEVVRRAAGRELPV 358 Query: 134 ILILNKIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++ + +D V+ R E + ++ + + T VS G G ++ + LC Sbjct: 359 VIAMTMMDKVQTPRHRELYFAMRTDLESLGLPTAATHEVSVKGGSGLVELKDCLCQYAKP 418 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 W + + +DL AE+ R+ L EIP+ W K+ G+ + + Sbjct: 419 GAWEHYRREATDLNPPQRVAELLRQTFMELLPHEIPHCMRHRVLGWTRKESGTTEVVVEV 478 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKK 276 + +RP+ GK ++ I L A++ Sbjct: 479 FFDRPAYMFTFYGK----LEAICLRAQQ 502 >gi|82703888|ref|YP_413454.1| tRNA modification GTPase TrmE [Nitrosospira multiformis ATCC 25196] gi|123543757|sp|Q2Y5A9|MNME_NITMU RecName: Full=tRNA modification GTPase mnmE gi|82411953|gb|ABB76062.1| tRNA modification GTPase trmE [Nitrosospira multiformis ATCC 25196] Length = 452 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG N GKS+L+NR G +V++VT TTR ++R ++ + + LDT G+ + Sbjct: 218 IALVGQPNVGKSSLLNRLAGEEVALVTEVPGTTRDVIRQVIEIEGVPMHLLDTAGLRETE 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D+ K+ + + STI A IV L+VDS + +L + RLI++ NK D ++ Sbjct: 278 DAIEKMGMARTRSTIDKASIVLLLVDSRVGITPEDQAILASLPP-GLRLIVVHNKTDLLE 336 >gi|71754451|ref|XP_828140.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70833526|gb|EAN79028.1| hypothetical protein, conserved [Trypanosoma brucei] gi|261333930|emb|CBH16924.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 382 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/242 (22%), Positives = 108/242 (44%), Gaps = 14/242 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF---NA 83 +VG N+GK++L+N + + V+++ TR RG+ + +Q+V LDTPGI Sbjct: 97 IVGTQNSGKTSLLNALSLSHIGAVSNRSGVTREWTRGVATVHNTQLVLLDTPGIVICNGE 156 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILIL 137 KD H + +W D+V L + + E K +++ + R ++L++ Sbjct: 157 KDRRRHAAPVARTWDAFTVTDLVMLTLPAGLGFVEPEQKTVAREVVHRASLRKMPVVLVI 216 Query: 138 NKIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +D V+ R E + ++ + + I S G+G ++ + LC W Sbjct: 217 TMMDRVQTPRHRELYFAMRTDLESLCLPIACVSETSVKGGNGLVELKDLLCRYASPGDWE 276 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 + ++ +D E+ R+ F L EIP+ W +K G++ + ++ +R Sbjct: 277 FFRNETTDATPVDRVMELLRQCFFEVLPHEIPHQMRHRIIGWTKKDSGTVEVITEVFFDR 336 Query: 253 PS 254 P+ Sbjct: 337 PA 338 >gi|194467398|ref|ZP_03073385.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23] gi|194454434|gb|EDX43331.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23] Length = 462 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT+ TTR ++ V+ + +DT G Sbjct: 221 RDGLATAIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD+V L++DS EL + LL+ A + + I+ILNK Sbjct: 281 IRDTNDQVEKIGVERSRKALGAADLVLLLIDSSNELTEEDYQLLE--ATKDKQRIIILNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM 166 D + L E +A K IE + + Sbjct: 339 TDLPRKVDLAELKSLAGKSAVIETSIV 365 >gi|325928523|ref|ZP_08189711.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas perforans 91-118] gi|325541062|gb|EGD12616.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas perforans 91-118] Length = 188 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKD 85 ++G N GKSTL N VGAKVSIV+++ QTTR + GI + E Q+V +DTPG+ K Sbjct: 1 MIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKR 60 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHR 113 + +++M R + +++ D LV+++ R Sbjct: 61 AMNRVMNRAARGSLEGVDAAVLVIEAGR 88 >gi|224827182|ref|ZP_03700277.1| tRNA modification GTPase TrmE [Lutiella nitroferrum 2002] gi|224600575|gb|EEG06763.1| tRNA modification GTPase TrmE [Lutiella nitroferrum 2002] Length = 450 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 8/133 (6%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ +R G V LVG N GKS+L+N G V+IVT TTR +R + Sbjct: 206 VQATARQGAILREGMHVVLVGQPNVGKSSLLNALAGDDVAIVTDIAGTTRDTLREEIVID 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + +DT G+ + D K+ I +W ++ AD+V ++VDS + + +L ++ + Sbjct: 266 GVPVHVIDTAGLRDTDDVVEKIGIERTWQAVQRADLVLVLVDSREGVGAEVSAILAKLPE 325 Query: 129 RSSRLILILNKID 141 R R + + NK+D Sbjct: 326 RLPR-VFVFNKVD 337 >gi|54295838|ref|YP_128253.1| tRNA modification GTPase TrmE [Legionella pneumophila str. Lens] gi|81822283|sp|Q5WSF0|MNME_LEGPL RecName: Full=tRNA modification GTPase mnmE gi|53755670|emb|CAH17173.1| hypothetical protein lpl2929 [Legionella pneumophila str. Lens] Length = 446 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 12/155 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G NAGKSTL+N G V+IVT TTR I+R + + + +DT G+ ++ Sbjct: 218 LVIAGRPNAGKSTLINNLAGRDVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-IHDLLKEIAKRSSRLILILNKIDCV 143 D K I+ +W +K AD V LVVD + + N +H+ LK +I + NKID Sbjct: 278 DLVEKEGIKRAWQELKRADCVLLVVDINNPDQQNSLHNELKLTLPDKIPIITVYNKIDTT 337 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 K L + + E T +SA G G D++ Sbjct: 338 K---LTAKCD--------EHTVYLSAKTGEGLDEL 361 >gi|294660633|ref|NP_853501.2| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. R(low)] gi|298286914|sp|Q7NAD9|MNME_MYCGA RecName: Full=tRNA modification GTPase mnmE gi|284812296|gb|AAP57069.2| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. R(low)] gi|284931001|gb|ADC30940.1| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. R(high)] Length = 453 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 13/162 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG-IVSEKESQIVFLDTPGIFNA 83 +A+VG NAGKS+L+N + + +IVT+ TTR V G IV E I +DT GI + Sbjct: 224 IAIVGEPNAGKSSLLNALLNEQKAIVTNIPGTTRDTVEGQIVLNDELIINLIDTAGIRKS 283 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D ++ I S+ TI +D+V ++D ++ + ++ K + + + +L+ NK+D V Sbjct: 284 SDQIEQIGINKSFKTIDKSDLVIYLIDLNKYQNYDKTNIYKYLINKKKQFVLVGNKVDEV 343 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 P L EI K+ + K + D++ YL T Sbjct: 344 DP--TLNTGEIQIKI----------SAKNNDISDLIKYLEET 373 >gi|297842581|ref|XP_002889172.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp. lyrata] gi|297335013|gb|EFH65431.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp. lyrata] Length = 560 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 1/164 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + ++ +IVT TTR +V V+ + I LDT GI Sbjct: 320 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITVLDTAGIRETN 379 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K+ + S + K AD++ + V + +LL++I + +IL++NKID Sbjct: 380 DIVEKIGVERSETAAKVADVIIMAVSAVEGWTEEDTELLRKI-QSDKPMILVMNKIDSAP 438 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 P + + K K+ SA G G +++ + + L L Sbjct: 439 PSSCDQLEDQRKKEEVFHKSVFTSAVTGQGLEELEDAILEILGL 482 >gi|145629133|ref|ZP_01784932.1| GTP-binding protein Era [Haemophilus influenzae 22.1-21] gi|144978636|gb|EDJ88359.1| GTP-binding protein Era [Haemophilus influenzae 22.1-21] Length = 97 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 6 DKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDT 65 Query: 78 PGI-FNAKDSYHKLMIRLSWSTIKHADIVCL 107 PG+ K + ++LM R + S I D++ L Sbjct: 66 PGLHIEEKRAINRLMNRAASSAIGDVDLIIL 96 >gi|330722061|gb|EGG99979.1| GTP-binding protein Era [gamma proteobacterium IMCC2047] Length = 129 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-I 244 +P + DQI+D AE+ REK+ L E+PY V E ++ +G +L I Sbjct: 1 MPAGIHYFPEDQITDRSERFMAAELVREKIMRRLGDELPYQVTVEIETFQ--LEGDVLHI 58 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +I VER QK+I++G G+ IK I +A+ ++ E+ V L L+VKV+ W D + Sbjct: 59 NALILVERNGQKRIIIGNKGEQIKAIGKDARLDMEEMFGYRVMLKLWVKVKSGWADDERA 118 Query: 305 C 305 Sbjct: 119 L 119 >gi|237785456|ref|YP_002906161.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium kroppenstedtii DSM 44385] gi|237758368|gb|ACR17618.1| cytidylate kinase [Corynebacterium kroppenstedtii DSM 44385] Length = 784 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKSTLVNRF+G + ++V TR + + + DT G Sbjct: 351 TVAILGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWNGRRFWVQDTGGWDPD 410 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + R + +K AD++ VVDS + + L +++ + ++L+ NK D Sbjct: 411 AKGMHAAIARQAEGAMKTADVIVFVVDSQVGITASDEMLARKLHRAEQPVVLVANKFDS- 469 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P + + AE + ++ + VSA GHG DVL+ + P P Sbjct: 470 -PTQYGDLAEF--WALGLDNPYPVSAKHGHGAADVLDEVIRLFPDKP 513 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--N 82 VALVG N GKS+L+N+ G ++V TT V +V + F+DT GI Sbjct: 525 VALVGKPNVGKSSLLNKMTGEDRAVVDDVAGTTVDPVDSLVELDQKTWTFVDTAGIRKKT 584 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + H+ L + I A++V +VD+ + +L+ I L++ NK D Sbjct: 585 KKATGHEYYAGLRTRGAIDAAEVVVFIVDASEPVTEQDQRVLRMILDSGRALVVAYNKWD 644 Query: 142 CVKPER 147 V +R Sbjct: 645 MVDEDR 650 >gi|325972629|ref|YP_004248820.1| GTP-binding protein engA [Spirochaeta sp. Buddy] gi|324027867|gb|ADY14626.1| GTP-binding protein engA [Spirochaeta sp. Buddy] Length = 514 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL N VG +SIV+ TTR +V G + K S LDT GI Sbjct: 195 IAILGKPNTGKSTLTNLLVGKDISIVSDIAGTTRDVVMGSFNYKGSDFTVLDTAGIRRKS 254 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + TI AD+V L++DS L + I +R +IL+LNKID Sbjct: 255 KVDEDVEYYSVNRAIKTIDEADVVLLMIDSVEGLADQDKKIANLIVRRGKGIILVLNKID 314 Query: 142 CV 143 + Sbjct: 315 LL 316 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 15/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK----ESQIVFLDTPG 79 V+++G N GKSTL NR +G + +I T + R ++ E+ + +D+ G Sbjct: 21 VVSIIGRPNVGKSTLFNRLIGKRRAI----TDPTPGVTRDLIPERWLLGNHPVTLIDSGG 76 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +DS L+ + S S ++ +D + ++D E+ +LL+ + + +++L++NK Sbjct: 77 VKVDRDSMDDLVAQKSLSLLELSDAIVFMMDCT-EVTAEDRELLEYLRPFTEKIVLVVNK 135 Query: 140 IDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +D K E LL E E ++ +SA G G +++ + L L L Sbjct: 136 VDDPKRENLLWEYYEYG-----YQRILGISAAHGLGIEELEDTLLGMLNL 180 >gi|218889917|ref|YP_002438781.1| GTP-binding protein EngA [Pseudomonas aeruginosa LESB58] gi|226741143|sp|B7UWJ2|DER_PSEA8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218770140|emb|CAW25902.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa LESB58] Length = 493 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD V +VDS + + + + KR+ R LI NK+D + Sbjct: 64 EEGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANKVDTI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ L +AE + + + ++A G G + +L P Sbjct: 124 DPD--LARAEFSP--LGLGDALPIAAAHGRGINHMLQEALGIFP 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + IV + TTR + E + +DT G+ Sbjct: 200 IAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAGVRRRG 259 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V V+D+ + + +LL + + L++ LNK D Sbjct: 260 KIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIALNKWD 319 Query: 142 CVK-PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 ++ ER + E+ +L+F++ +SA G G Sbjct: 320 GMEAAERDYVKTELERRLLFVDFADIHFISALHGTGV 356 >gi|12045249|ref|NP_073060.1| GTP-binding protein Era [Mycoplasma genitalium G37] gi|1352385|sp|P47627|ERA_MYCGE RecName: Full=GTPase Era gi|3844976|gb|AAC71614.1| GTP-binding protein Era [Mycoplasma genitalium G37] gi|166078885|gb|ABY79503.1| GTP-binding protein Era [synthetic Mycoplasma genitalium JCVI-1.0] Length = 290 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 136/284 (47%), Gaps = 22/284 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR--SIVRGIVSEKESQIVFLDTPGIFN 82 V ++G TNAGKSTL+N F+ S++ + T SI ++++ IVF+D PG Sbjct: 6 VGVLGPTNAGKSTLIN-FLHNDDSLMVSSMNNTTLLSISTEVINQANKNIVFIDVPGFTE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL--ILILNKI 140 K S ++L+ + + D++ LVV S + K+ + KR L I ++NK Sbjct: 65 KKHSNYELITKEIRKALSGIDVLLLVVRSDQNNKIEFLKTQLQQLKRYQNLTRIFLINKF 124 Query: 141 DCVKPERLLEQAEIANKLVFIE-----KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 ++ L + NK + +E KT ++ K ++ + + L ++ Sbjct: 125 H----QKSLSE---VNKAIILEEFKPQKTIEINLLKFDK--NLFWSIFKQVELRYNIFRK 175 Query: 196 D-QISDLPMFHF-TAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVIYVER 252 D D F E RE++ + EIP+ + + + EK K+ + I VI V + Sbjct: 176 DINFIDANNDDFKILEGLREQIIFYCKNEIPHIARIEIIEKSFNKEKNLLKIHLVISVPK 235 Query: 253 PSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQK 296 SQKKI++GKN + IK I + +K++ + + + +FVK +K Sbjct: 236 LSQKKIIIGKNAEMIKAIGIATRKKLLNHFDCDIFIDIFVKTEK 279 >gi|116051824|ref|YP_789333.1| GTP-binding protein EngA [Pseudomonas aeruginosa UCBPP-PA14] gi|122260971|sp|Q02RV3|DER_PSEAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115587045|gb|ABJ13060.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa UCBPP-PA14] Length = 493 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD V +VDS + + + + KR+ R LI NK+D + Sbjct: 64 EEGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANKVDTI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ L +AE + + + ++A G G + +L P Sbjct: 124 DPD--LARAEFSP--LGLGDALPIAAAHGRGINHMLQEALGIFP 163 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + IV + TTR + E +DT G+ Sbjct: 200 IAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEMYTLIDTAGVRRRG 259 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V V+D+ + + +LL + + L++ LNK D Sbjct: 260 KIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIALNKWD 319 Query: 142 CVK-PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 ++ ER + E+ +L+F++ +SA G G Sbjct: 320 GMEAAERDYVKTELERRLLFVDFADIHFISALHGTGV 356 >gi|255066860|ref|ZP_05318715.1| GTP-binding protein Era [Neisseria sicca ATCC 29256] gi|255048935|gb|EET44399.1| GTP-binding protein Era [Neisseria sicca ATCC 29256] Length = 119 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 70/116 (60%) Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVE 251 +Y + ++D EI REKLF +L +E+PY+ V E++EE+++G I + V+ Sbjct: 1 MYPEEMVTDRSSRFLATEIVREKLFRYLGEELPYAMNVEIEQFEEEENGLYRIYIAVLVD 60 Query: 252 RPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKCCPQ 307 + SQK I++GK G+ +K IS EA+ ++ ++ + V L ++VKV+ W D + + Sbjct: 61 KDSQKAILIGKGGEKLKKISTEARLDMEKLFDTKVFLKVWVKVKSGWADDVRFLRE 116 >gi|15598994|ref|NP_252488.1| GTP-binding protein EngA [Pseudomonas aeruginosa PAO1] gi|107103319|ref|ZP_01367237.1| hypothetical protein PaerPA_01004388 [Pseudomonas aeruginosa PACS2] gi|152985588|ref|YP_001346699.1| GTP-binding protein EngA [Pseudomonas aeruginosa PA7] gi|254236703|ref|ZP_04930026.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254242490|ref|ZP_04935812.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|313109217|ref|ZP_07795185.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa 39016] gi|26006739|sp|Q9HXJ8|DER_PSEAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225840|sp|A6V0W4|DER_PSEA7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|9949972|gb|AAG07186.1|AE004798_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126168634|gb|EAZ54145.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126195868|gb|EAZ59931.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|150960746|gb|ABR82771.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] gi|310881687|gb|EFQ40281.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa 39016] Length = 493 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD V +VDS + + + + KR+ R LI NK+D + Sbjct: 64 EEGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANKVDTI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ L +AE + + + ++A G G + +L P Sbjct: 124 DPD--LARAEFSP--LGLGDALPIAAAHGRGINHMLQEALGIFP 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + IV + TTR + E + +DT G+ Sbjct: 200 IAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAGVRRRG 259 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V V+D+ + + +LL + + L++ LNK D Sbjct: 260 KIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIALNKWD 319 Query: 142 CVK-PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 ++ ER + E+ +L+F++ +SA G G Sbjct: 320 GMEAAERDYVKTELERRLLFVDFADIHFISALHGTGV 356 >gi|168218051|ref|ZP_02643676.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239] gi|182379938|gb|EDT77417.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239] Length = 458 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + +VG N GKS+L+N + K +IVT TTR ++ ++ + +DT G Sbjct: 222 RDGLSMVIVGKPNVGKSSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S I AD+V L++D+ REL +++ I R + I++LNK Sbjct: 282 IRETEDVVEKIGVEKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDR--KYIVLLNK 339 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +D +R L +EI + L E +SA G G DD+ Sbjct: 340 VDL---DRKL-SSEIVDNL---ENKIELSAKTGFGIDDL 371 >gi|18311637|ref|NP_563571.1| tRNA modification GTPase TrmE [Clostridium perfringens str. 13] gi|110799764|ref|YP_697346.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124] gi|168207742|ref|ZP_02633747.1| tRNA modification GTPase TrmE [Clostridium perfringens E str. JGS1987] gi|168211557|ref|ZP_02637182.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC 3626] gi|168214843|ref|ZP_02640468.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str. F4969] gi|169343475|ref|ZP_02864475.1| tRNA modification GTPase TrmE [Clostridium perfringens C str. JGS1495] gi|182626407|ref|ZP_02954160.1| tRNA modification GTPase TrmE [Clostridium perfringens D str. JGS1721] gi|21363002|sp|Q8XH30|MNME_CLOPE RecName: Full=tRNA modification GTPase mnmE gi|123344426|sp|Q0TLZ4|MNME_CLOP1 RecName: Full=tRNA modification GTPase mnmE gi|18146321|dbj|BAB82361.1| probable thiophen / furan oxidation protein [Clostridium perfringens str. 13] gi|110674411|gb|ABG83398.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124] gi|169298427|gb|EDS80516.1| tRNA modification GTPase TrmE [Clostridium perfringens C str. JGS1495] gi|170660919|gb|EDT13602.1| tRNA modification GTPase TrmE [Clostridium perfringens E str. JGS1987] gi|170710445|gb|EDT22627.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC 3626] gi|170713713|gb|EDT25895.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str. F4969] gi|177908281|gb|EDT70834.1| tRNA modification GTPase TrmE [Clostridium perfringens D str. JGS1721] Length = 458 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + +VG N GKS+L+N + K +IVT TTR ++ ++ + +DT G Sbjct: 222 RDGLSMVIVGKPNVGKSSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S I AD+V L++D+ REL +++ I R + I++LNK Sbjct: 282 IRETEDVVEKIGVEKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDR--KYIVLLNK 339 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +D +R L +EI + L E +SA G G DD+ Sbjct: 340 VDL---DRKL-SSEIVDNL---ENKIELSAKTGFGIDDL 371 >gi|89092260|ref|ZP_01165214.1| GTP-binding protein in thiophene and furan oxidation [Oceanospirillum sp. MED92] gi|89083348|gb|EAR62566.1| GTP-binding protein in thiophene and furan oxidation [Oceanospirillum sp. MED92] Length = 455 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 10/166 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 219 SVVIAGRPNAGKSSLLNALAGRETAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA 278 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 D ++ I +W I+ AD V L+VDS + + E + SSR+ +I NK Sbjct: 279 PDEVERIGINRAWEEIRKADRVLLMVDSQSTQTDDPEQIWPEFVHQLPESSRITVIRNKA 338 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D L I + T +SA + G D + N+L T+ Sbjct: 339 D-------LSGETIGQREAHDHTTITLSAKEQSGVDLLRNHLKETM 377 >gi|257470414|ref|ZP_05634505.1| tRNA modification GTPase TrmE [Fusobacterium ulcerans ATCC 49185] gi|317064622|ref|ZP_07929107.1| thiophene and furan oxidation protein THDF [Fusobacterium ulcerans ATCC 49185] gi|313690298|gb|EFS27133.1| thiophene and furan oxidation protein THDF [Fusobacterium ulcerans ATCC 49185] Length = 456 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 15/156 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+++N + + +IVTH TTR ++ +V+ K +V +DT GI D Sbjct: 224 AIVGKPNVGKSSILNSVLKEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVDTAGIRKTDD 283 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I+ AD++ VVD R L + IH+ +K + ++I ILNKID Sbjct: 284 LVENIGVEKSKQLIESADLILFVVDGSRALDEEDMRIHEAIK-----AEKVIGILNKIDI 338 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + L + L I K +SA K G D++ Sbjct: 339 REDIDL-------SPLTKINKWLEISAIKNQGIDEM 367 >gi|146088540|ref|XP_001466079.1| hypothetical protein [Leishmania infantum JPCM5] gi|134070181|emb|CAM68514.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 489 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 123/268 (45%), Gaps = 22/268 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G NAGK++LVN + V V+++ +T+ + + + ++Q++ LDTPGI + Sbjct: 201 VAFLGPQNAGKTSLVNSMALSNVGAVSNRYGSTKDWTKAVATVHDTQLLLLDTPGIV-PR 259 Query: 85 DSYHKLMIRLSWSTIKH------ADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRL 133 D+ ++ + + T K +D+V L + +E KV ++++ A R + Sbjct: 260 DT-QRVRRKFASGTAKAYDALFVSDLVVLALPVGVGFVEKEHKVVATEVVRRAAGRELPV 318 Query: 134 ILILNKIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++ + +D V+ R E + ++ + + T VS G G ++ + LC Sbjct: 319 VIAMTMMDKVQTPRHRELYFAMRTDLESLGLPTAATHEVSVKGGSGLVELKDCLCQYAKP 378 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 W + + +DL AE+ R+ L EIP+ W K+ G+ + + Sbjct: 379 GAWEHYRREATDLNPPQRVAELLRQTFMELLPHEIPHCMRHRVLGWTRKESGTTEVVVEV 438 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKK 276 + +RP+ GK ++ I L A++ Sbjct: 439 FFDRPAYMFTFYGK----LEAICLRAQQ 462 >gi|254492694|ref|ZP_05105865.1| putative GTPase [Methylophaga thiooxidans DMS010] gi|224462215|gb|EEF78493.1| putative GTPase [Methylophaga thiooxydans DMS010] Length = 468 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 11/181 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR ++ ++V TR + G V E+ + +DT G+ + Sbjct: 4 VIALVGRPNVGKSTIFNRLTRSRDALVADYAGLTRDRIYGTVREENLDFILIDTGGLTDQ 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D+ LM + + I AD+V +VD L + D+ +++ + L++NK + Sbjct: 64 TDNMSDLMRKQAKLAIDEADLVLFIVDGRAGLMPSDTDVAQQLRSDGKPVRLVINKTEG- 122 Query: 144 KPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY-SADQIS 199 EQ E+ + + + ++SAT+G G ++L + LP A ++ D+ + Sbjct: 123 ------EQREMVAADFYSLGLGEPQVISATQGRGFTELLEEIKVCLPQAEVLFEEEDEAT 176 Query: 200 D 200 D Sbjct: 177 D 177 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 10/176 (5%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F E + D +A++G N GKSTL+NR +G + + + TTR + I E Sbjct: 168 LFEEEDEATDDRPDDIRLAVLGRPNVGKSTLINRLLGEERVVAFDEPGTTRDSIH-IPFE 226 Query: 68 KES-QIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDL 122 K+ +DT G+ + K + + ++ A++ LV+D+H + + ++H L Sbjct: 227 KDGVNYTLIDTAGVRRRSKVSEKLEKFSVLKTLQALEDANVALLVLDAHEGIVEQDLH-L 285 Query: 123 LKEIAKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 I + ++L +NK D + K ER I +L F+ KT +SA G G Sbjct: 286 AGLILESGRAVVLAVNKWDGLEKSEREWVATNIERRLPFMNFAKTHFISALHGSGV 341 >gi|162454229|ref|YP_001616596.1| GTP-binding protein [Sorangium cellulosum 'So ce 56'] gi|161164811|emb|CAN96116.1| GTP-binding protein [Sorangium cellulosum 'So ce 56'] Length = 598 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 5/171 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VALVG N GKSTL NR VG +V+IV + TR G V+ + + +DT G Sbjct: 159 GIVALVGRPNTGKSTLFNRLVGKRVAIVHDEPGVTRDRHYGDVTSRGRRFTLVDTGGFDP 218 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + I+ I AD++ V+D+ + + H L + + +I + NK D Sbjct: 219 ESDDPMRQGIKRQIDLAIAEADVIVCVLDAVTPVTPSEHAELGLLRRAGKPVIYVANKAD 278 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 K E +E AE+ + +E+ +SA G G D+ + + LP P Sbjct: 279 SPKAE--VEAAELYR--LGMERLIPISALHGRGISDLEMAIEAALPEEPAA 325 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 9/168 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A++G NAGKS+LVNR G + +V TTR + + + + +DT GI Sbjct: 336 IAIIGRPNAGKSSLVNRIAGEERMLVDATPGTTRDPIDTLAERDGKRFLLIDTAGIRRKS 395 Query: 83 --AKD--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 AK+ + + + + ++ A++V L+ D+ + +L R +++ LN Sbjct: 396 KVAKEDSAVEAVSVIHAIRAMERAEVVLLLCDAAEGVAEQDAKILGLAVDRGCGVVIGLN 455 Query: 139 KIDCVKPERLLEQAEIA-NKLVFIE--KTFMVSATKGHGCDDVLNYLC 183 KID + + L + + A +KL F+ VSA G G ++ + Sbjct: 456 KIDLLDRKALAKAEQDARDKLSFVPWAPIAHVSARSGRGVAKLIETVA 503 >gi|322499602|emb|CBZ34676.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 475 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 123/268 (45%), Gaps = 22/268 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G NAGK++LVN + V V+++ +T+ + + + ++Q++ LDTPGI + Sbjct: 187 VAFLGPQNAGKTSLVNSMALSNVGAVSNRYGSTKDWTKAVATVHDTQLLLLDTPGIV-PR 245 Query: 85 DSYHKLMIRLSWSTIKH------ADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRL 133 D+ ++ + + T K +D+V L + +E KV ++++ A R + Sbjct: 246 DT-QRVRRKFASGTAKAYDALFVSDLVVLALPVGVGFVEKEHKVVATEVVRRAAGRELPV 304 Query: 134 ILILNKIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++ + +D V+ R E + ++ + + T VS G G ++ + LC Sbjct: 305 VVAMTMMDKVQTPRHRELYFAMRTDLESLGLPTAATHEVSVKGGSGLVELKDCLCQYAKP 364 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 W + + +DL AE+ R+ L EIP+ W K+ G+ + + Sbjct: 365 GAWEHYRREATDLNPPQRVAELLRQTFMELLPHEIPHCMRHRVLGWTRKESGTTEVVVEV 424 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKK 276 + +RP+ GK ++ I L A++ Sbjct: 425 FFDRPAYMFTFYGK----LEAICLRAQQ 448 >gi|260890872|ref|ZP_05902135.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254] gi|260859425|gb|EEX73925.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254] Length = 162 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 69/117 (58%) Query: 28 VGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSY 87 +G N GKSTL+N + + +IVTH TTR ++ I++ K +V +DT GI D Sbjct: 1 MGKPNVGKSTLLNALLHEERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDIV 60 Query: 88 HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + S I+ AD+V LV+D+ +EL+ +++ +I + ++I++LNKID K Sbjct: 61 ENIGVEKSKQFIEKADLVLLVLDASKELENEDIEVINQIKENKKKVIVLLNKIDLNK 117 >gi|210624042|ref|ZP_03294159.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275] gi|210153249|gb|EEA84255.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275] Length = 462 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 7/159 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N +G +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLKTVIVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD++ +VVDS EL ++L+++ + + IL+LNK Sbjct: 282 IRETDDVVEKIGVEKSMASFDTADLIIMVVDSSSELSEEDREILEKVQGKET--ILLLNK 339 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D +++++ E+ K V E +SA G +DV Sbjct: 340 TDL---PQVIDEEEV-KKYVNEENIIKISALHNEGIEDV 374 >gi|284931758|gb|ADC31696.1| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. F] Length = 453 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 13/162 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG-IVSEKESQIVFLDTPGIFNA 83 +A+VG NAGKS+L+N + + +IVT+ TTR V G IV + I +DT GI + Sbjct: 224 IAIVGEPNAGKSSLLNSLLNEQKAIVTNIPGTTRDTVEGQIVLNDQLIINLIDTAGIRKS 283 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D ++ I S+ TI +D+V ++D ++ + ++ K + + + +L+ NK+D V Sbjct: 284 SDQIEQIGINKSFKTIDKSDLVIYLIDLNKYQNYDKTNIYKYLINKKKQFVLVGNKVDEV 343 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 P L EI K+ + K + D++ YL T Sbjct: 344 DPT--LNTGEIQIKI----------SAKNNDISDLIKYLEET 373 >gi|260655278|ref|ZP_05860766.1| ribosome-associated GTPase EngA [Jonquetella anthropi E3_33 E1] gi|260629726|gb|EEX47920.1| ribosome-associated GTPase EngA [Jonquetella anthropi E3_33 E1] Length = 440 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 V++VG N GKS+L NR VG++ +IV + TR + G V + +DT G + Sbjct: 4 VSIVGRPNVGKSSLFNRLVGSRRAIVDDQPGVTRDRLFGRVEWGDRSFYLVDTGGLLLRD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + M I+ +D V VVD + D+ + K SSR+I+++NK+D Sbjct: 64 DDPIMRSMRGQIQQAIEESDAVLFVVDGPSGVTWMDQDVADVLRKASSRVIVVINKLDDW 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K + L A A L F +K VSA G D++ +C+ LP Sbjct: 124 KHDDL---AMEAYSLGF-DKVIGVSALHDRGIDELKEAVCAVLP 163 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG N GKS+++NR G S+V+ TTR + ++ +DT G+ + Sbjct: 177 IALVGRPNCGKSSILNRLAGEDRSLVSDVAGTTRDAIDWETAQNSRTFRIVDTAGL--RR 234 Query: 85 DSYHKLMIRL-----SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 S K + + + D+ ++D+ L+ EI R L+L++NK Sbjct: 235 KSRQKGNVEFYSSVRTMQAVDECDVAVFIMDASEPATEQDQRLVAEILDRGKGLVLVVNK 294 Query: 140 IDCVKPER 147 D + ER Sbjct: 295 WDLITGER 302 >gi|296387686|ref|ZP_06877161.1| GTP-binding protein EngA [Pseudomonas aeruginosa PAb1] Length = 493 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD V +VDS + + + + KR+ R L+ NK+D + Sbjct: 64 EEGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLVANKVDTI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ L +AE + + + ++A G G + +L P Sbjct: 124 DPD--LARAEFSP--LGLGDALPIAAAHGRGINHMLQEALGIFP 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + IV + TTR + E + +DT G+ Sbjct: 200 IAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAGVRRRG 259 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V V+D+ + + +LL + + L++ LNK D Sbjct: 260 KIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIALNKWD 319 Query: 142 CVK-PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 ++ ER + E+ +L+F++ +SA G G Sbjct: 320 GMEAAERDYVKTELERRLLFVDFADIHFISALHGTGV 356 >gi|86610114|ref|YP_478876.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)] gi|123500914|sp|Q2JIE6|MNME_SYNJB RecName: Full=tRNA modification GTPase mnmE gi|86558656|gb|ABD03613.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)] Length = 459 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + G +IVT TTR +V + K + LDT G Sbjct: 223 RTGVKVAIVGRPNVGKSSLLNAWSGQDRAIVTDLPGTTRDVVESHLVVKGIPVQLLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D +L + S + AD++ LV+D+ + + I R LIL++NK Sbjct: 283 IRATEDPVERLGVERSQRLAQAADVLVLVIDAQAGWTAADAAIYESIRHRP--LILVINK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D PE + EIA+++ + A +G G ++ Sbjct: 341 TDLAPPEGIPLPPEIAHRVPAV-------AAQGKGIPEL 372 >gi|301064536|ref|ZP_07204932.1| tRNA modification GTPase TrmE [delta proteobacterium NaphS2] gi|300441284|gb|EFK05653.1| tRNA modification GTPase TrmE [delta proteobacterium NaphS2] Length = 461 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 6/150 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G N+GKS+L+NR + +IVT TTR ++ + I +DT GI D+ Sbjct: 227 IAGRVNSGKSSLLNRLLNETKAIVTDIPGTTRDVIEATFNVGGIPIRIMDTAGIRKVNDT 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ I L+ AD++ V+D R + + DLL++ + + ++++NKID Sbjct: 287 VEKMGIDLALQKTAEADLLLFVIDRSRPINRDDMDLLEQ--GENKKALVVMNKIDLPPAP 344 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 E+A+ ++ +E +SA G G D Sbjct: 345 DFAEKADSLSRFSVLE----ISALTGEGID 370 >gi|332982413|ref|YP_004463854.1| ribosome-associated GTPase EngA [Mahella australiensis 50-1 BON] gi|332700091|gb|AEE97032.1| ribosome-associated GTPase EngA [Mahella australiensis 50-1 BON] Length = 437 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 7/163 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA++G N GKSTL NR VG ++SIV TR + V +DT GI F+ Sbjct: 5 TVAIIGRPNVGKSTLFNRLVGRRISIVDDTPGITRDRIYADVEWTGKIFSLVDTGGIDFS 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 KDS MIR + I AD++ LVVD++ E + + + +I +RS++ ++L+ NK+D Sbjct: 65 GKDSIVNQMIRQAQYAIDTADVILLVVDAN-EGMTSADEEVADILRRSNKSVLLVCNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + LL KL + +SA G G D+L+ + + Sbjct: 124 NFNRKDLLYDFY---KL-GLGDPIPISAGNGLGIGDLLDKIVA 162 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 15/177 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS++VNR +G + IV+ + TTR + ++ + + + +DT G+ Sbjct: 178 IAVIGKPNAGKSSIVNRLLGQERVIVSDQPGTTRDAIDVLIEHEGDRYILIDTAGLRRKA 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + + + ++ +D+ LV+D+ + + ++ LI++LNK D Sbjct: 238 KINEAVERYSVSRALEAVQRSDVAALVIDAVEGVTEQDAKIAGFAHEKGKGLIVLLNKWD 297 Query: 142 CVKPERLL---EQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 ++ + + +IA KL FI +SA G D + LP+ +V+ Sbjct: 298 LIEKDNKTVSRYKQDIAEKLGFIGYAPVLFISAKTGQRMDKI-------LPMVKYVF 347 >gi|71909809|ref|YP_287396.1| tRNA modification GTPase TrmE [Dechloromonas aromatica RCB] gi|123626188|sp|Q477Q5|MNME_DECAR RecName: Full=tRNA modification GTPase mnmE gi|71849430|gb|AAZ48926.1| tRNA modification GTPase trmE [Dechloromonas aromatica RCB] Length = 448 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+NR G ++IVT TTR +R + + + +DT G+ Sbjct: 217 VVLAGQPNVGKSSLLNRLAGDDLAIVTPIAGTTRDALRSTIQIEGIPLHIIDTAGLRETD 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K+ I SW I+ +D+V L+VD+ + + ++L + R R I + NKID Sbjct: 277 DEVEKIGIERSWKEIERSDVVLLLVDARTGVSESDREILARLPDRLQR-ITVYNKIDLT 334 >gi|54299006|ref|YP_125375.1| tRNA modification GTPase TrmE [Legionella pneumophila str. Paris] gi|81822476|sp|Q5X0M3|MNME_LEGPA RecName: Full=tRNA modification GTPase mnmE gi|53752791|emb|CAH14226.1| hypothetical protein lpp3073 [Legionella pneumophila str. Paris] Length = 446 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 12/155 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G NAGKSTL+N G V+IVT TTR I+R + + + +DT G+ ++ Sbjct: 218 LVIAGRPNAGKSTLINNLAGRDVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K I+ +W +K AD V LVVD ++R+ + ++ + L+ +I + NKID Sbjct: 278 DLVEKEGIKRAWQELKRADCVLLVVDINNRDQQNSLLNELRLTLPNKIPIITVYNKIDTT 337 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 K L + + E T +SA G G D++ Sbjct: 338 K---LTAKCD--------EHTVYLSAKTGEGLDEL 361 >gi|320335804|ref|YP_004172515.1| GTP-binding protein engA [Deinococcus maricopensis DSM 21211] gi|319757093|gb|ADV68850.1| GTP-binding protein engA [Deinococcus maricopensis DSM 21211] Length = 441 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L NR VG + ++V TR G++ + +IV +DT G+++ Sbjct: 4 VAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGVMLYQNHRIVLIDTGGLWSGD 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + W+ ++ A V V+D +L +++ + + + +I++ NKID K Sbjct: 64 EWEEAIRQKAEWA-MEGAQCVIFVLDPRDDLSAADYEVAEWLRRLGKPVIVVANKIDNPK 122 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L AE+ L F E VSA G DD+++ + LP Sbjct: 123 HDAYL--AELWG-LGFGE-PLPVSAEHARGLDDLMDRVLDYLP 161 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 13/163 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++L+G N GKS+L+N G++ IV+ TTR V + V +DT GI Sbjct: 175 ISLIGRPNVGKSSLLNAITGSERVIVSDVPGTTRDSVDVEWDYAGQRFVLVDTAGIRKRP 234 Query: 85 D-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNKID 141 D S + + S + I +D++ LV++ ++ H+L L +A S + +I+++NK D Sbjct: 235 DTSIEEYAMMRSEAAITRSDVILLVLNV---TELGDHELKLANLAYDSGKPVIVVVNKWD 291 Query: 142 CVKPERLLEQAE--IANKL---VFIEKTFMVSATKGHGCDDVL 179 V P+ L++AE + KL F + + SA +G D+L Sbjct: 292 LV-PDEDLKKAEKDLDQKLFHIAFAPRVY-TSAINEYGIHDLL 332 >gi|222823559|ref|YP_002575133.1| tRNA modification GTPase, TrmE [Campylobacter lari RM2100] gi|222538781|gb|ACM63882.1| tRNA modification GTPase, TrmE [Campylobacter lari RM2100] Length = 442 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 64/117 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKS+L+N + +IV+ TTR + + I +DT GI NA Sbjct: 217 VAIIGKPNAGKSSLLNSLLAFDRAIVSDIAGTTRDRIEESLKIGSHLIKIIDTAGIRNAD 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K+ + LS+ +IK ADI+ +V D +E + +L+ + ++I +LNK D Sbjct: 277 DEIEKIGVHLSYESIKEADIIIVVFDGSKEFEEEDERILQALKDCDKKIIYVLNKSD 333 >gi|238899053|ref|YP_002924735.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259495842|sp|C4K7P4|MNME_HAMD5 RecName: Full=tRNA modification GTPase mnmE gi|229466813|gb|ACQ68587.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 458 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 13/167 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G N GKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 221 IVIAGRPNVGKSSLLNALTGRETAIVTQIPGTTRDVLREQIQINGMPLHIIDTAGLRETE 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNKI 140 D K+ I +W+ I+ AD + +VD + I+ L E R SR + LI NK Sbjct: 281 DPVEKIGIERAWNEIEQADRILFIVDGSTSSEKTIYPLWPEWEARLSRSRLPITLIRNKS 340 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTL 186 D + L + E E TF+ +SA G G D + +L T+ Sbjct: 341 DITGEDVALTETE--------EGTFISLSARTGEGIDLLREHLQQTM 379 >gi|260434789|ref|ZP_05788759.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109] gi|260412663|gb|EEX05959.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109] Length = 450 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 +E+ ++ E D ++ R VALVG N GKS+L+NR + +IVT TTR + Sbjct: 203 LELQQLVRDGERGDALRKGLR---VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDL 259 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + ++ + I LDT GI + D+ +L I S + AD+V LV+D H Sbjct: 260 LESEIALEGVPITLLDTAGIRSTDDAVERLGIARSEEALATADVVLLVLDGHAGWTSEDA 319 Query: 121 DLLKEIAKRSSRLILILNKID 141 LL I ++ R IL+ NK D Sbjct: 320 ALLARIPEQIPR-ILVANKAD 339 >gi|108804275|ref|YP_644212.1| small GTP-binding protein domain-containing protein [Rubrobacter xylanophilus DSM 9941] gi|108765518|gb|ABG04400.1| Small GTP-binding protein domain [Rubrobacter xylanophilus DSM 9941] Length = 437 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI-------VFLD 76 +A++G N GKSTL+NR +G + ++V+ TT +V SE E Q+ LD Sbjct: 181 GIAIIGRPNVGKSTLLNRLLGEQRAVVSEAAGTTTDVVE---SEVEVQLDGGRERFALLD 237 Query: 77 TPGI----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 T G+ A+ + +R + I+ + + LVVD+ L L +++ + Sbjct: 238 TAGVGKRTHRAQGVPYYSALR-TAEAIRRSSVALLVVDAAEGLVAGDLQLARQVEEAGRS 296 Query: 133 LILILNKIDCVKPERLLE-QAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLC 183 L ++LNK D V PERL E Q + A +L ++ + VSA G G +VL + Sbjct: 297 LGVLLNKRDLVPPERLREVQEQAAARLPDLKPPVLGVSALTGAGVGEVLPFAA 349 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 17/174 (9%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK--ESQIVFL 75 D R VA+VGA N GKS+LVNR +G + ++V + TTR RG + + + + Sbjct: 3 DRRRLPVVAVVGAPNVGKSSLVNRILGRRRAVVAEEPGTTRD--RGYARAEWAGREFLLV 60 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DT G+ +A+ L+ + ++ AD++ + D+ + +E+ + + ++ Sbjct: 61 DTGGMEPSARMGLEALVTLQARIAVEEADVIVHLTDARTGPTEADAAIARELLRSRAEVV 120 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCS 184 L +NK+D + A+ + + F + VSA G G D+L+ + + Sbjct: 121 LAVNKLD--------DPADESERYRFYSLGEGEPHPVSALHGLGVGDLLDEVVA 166 >gi|27905016|ref|NP_778142.1| putative GTP-binding protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395803|sp|Q89A14|DER_BUCBP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27904414|gb|AAO27247.1| putative GTP-binding protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 462 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 14/167 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKV-SIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G TN GKSTL N+ G + ++ ++ TR G + ++IV +DTPGI Sbjct: 5 IALIGRTNVGKSTLFNKLTGNRNDALASNHASLTRDRKHGFIIVNNTKIVLIDTPGI--N 62 Query: 84 KDSYHKLMI------RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 +DS K+ + ++ +S IK AD+VCLVV + +L ++++ + K ++ L++ Sbjct: 63 EDSKKKISLDKEIFEQVKFS-IKQADLVCLVVSARNKLMHKDVEIIEMLRKFQKKIFLLV 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 NKI+ + + L + E + + +SAT G G D + N +CS Sbjct: 122 NKIEGLNFD--LVKYEFYT--LGLRNMHFISATNGIGIDFLTNNICS 164 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N+ K+ Q+ +++ +A++G N GKSTL+N + K IV TTR ++ + Sbjct: 188 NDKKNCCQNLNKTIKIAIIGKPNVGKSTLINVLLNEKRVIVDSNPGTTRDSNWSLIIRNK 247 Query: 70 SQIVFLDTPGI 80 +F DT GI Sbjct: 248 INYMFFDTAGI 258 >gi|291543597|emb|CBL16706.1| ribosome-associated GTPase EngA [Ruminococcus sp. 18P13] Length = 442 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ +G ++SIV TR + + + + +DT GI + Sbjct: 6 VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYSKCEWRGREFMVVDTGGIEPDT 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R + I AD++ LV D + N + + + K ++L +NK D + Sbjct: 66 DDVILAQMRRQAEVAIHRADVIVLVTDVRCGVTANDYAVADMLQKSGKPVVLAVNKCDTI 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E LE E N + I + F +S+ GHG D+L+ + LP Sbjct: 126 G-EPPLELYEFYN--LGIGEPFPISSQHGHGTGDMLDEILKYLP 166 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKS+L+N+ G + IV+ TTR +V ++ + VF+DT GI Sbjct: 180 VAVIGKPNAGKSSLINKIAGEERVIVSDIAGTTRDATDTVVENEQGKFVFIDTAGIRKKS 239 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + ++ + AD+ +++D+ + ++ I+ +NK D Sbjct: 240 RITERVEHFSVLRAYMAVDRADVCIIMIDAQTGFTEQDSKVAGYAHEQGKASIIAVNKWD 299 Query: 142 CVKPE 146 ++ + Sbjct: 300 LIEKD 304 >gi|227543714|ref|ZP_03973763.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri CF48-3A] gi|300908779|ref|ZP_07126242.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112] gi|227186282|gb|EEI66353.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri CF48-3A] gi|300894186|gb|EFK87544.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112] Length = 477 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT+ TTR ++ V+ + +DT G Sbjct: 236 RDGLATAIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAG 295 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD+V L++DS EL LL+ A + + I+ILNK Sbjct: 296 IRDTNDQVEKIGVERSRKALGAADLVLLLIDSSNELTDEDRQLLE--ATKDKQRIIILNK 353 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM 166 D + L E +A K IE + + Sbjct: 354 TDLPRKVDLEELKSLAGKSAVIETSIV 380 >gi|91977066|ref|YP_569725.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris BisB5] gi|91683522|gb|ABE39824.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris BisB5] Length = 434 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 96/225 (42%), Gaps = 18/225 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R + + + DT G + Sbjct: 203 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRALSLPHGGKAMLSDTVGFISN 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDL---LKEIA--KRSSRLILIL 137 + R + + AD++ V D +H + + D+ L+++ S R++ I Sbjct: 263 LPTQLVAAFRATLEEVLEADLILHVRDIAHEDAEAQDRDVDAVLRQLGVEADSGRILEIW 322 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL----NYLCSTLPLAPWVY 193 NKID +PE+L E IA + F+VSA G G DDVL L T + Sbjct: 323 NKIDRFEPEQLEELRNIAARRSPDHPCFLVSAVSGEGVDDVLLAIEQRLAMTRTVLDLTI 382 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK 238 A + + H AE+ L KE+ +T + +E K Sbjct: 383 DAADGAGVSWLHRNAEV--------LSKELQDGRYTMTVRVDETK 419 >gi|119486976|ref|ZP_01620848.1| tRNA modification GTPase [Lyngbya sp. PCC 8106] gi|119455905|gb|EAW37039.1| tRNA modification GTPase [Lyngbya sp. PCC 8106] Length = 469 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 17/136 (12%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------ 73 RSG VA+VG N GKS+L+N + + +IVT TTR +V ESQ+V Sbjct: 223 RSGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV-------ESQLVVGGIPV 275 Query: 74 -FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 LDT GI N++D K+ I S + K AD+V L +D+ + ++ +++ R Sbjct: 276 QVLDTAGIRNSEDQVEKIGIERSQTAAKLADLVLLTIDAEAGWTESDEEIYQQVQHRP-- 333 Query: 133 LILILNKIDCVKPERL 148 LILILNKID V L Sbjct: 334 LILILNKIDRVSANEL 349 >gi|313904719|ref|ZP_07838093.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6] gi|313470512|gb|EFR65840.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6] Length = 460 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 67/126 (53%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N +G + +IVT TTR I+ ++ K + LDT GI +A D Sbjct: 228 IVGKPNAGKSSLLNLLIGEEKAIVTDIAGTTRDILEEQINIKGITLRLLDTAGIRDASDV 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + + +K AD+V VVD L N +++K I R +IL N + + Sbjct: 288 IEKIGVERAKEQVKDADLVLYVVDGSVALDDNDFEIMKLIKDRKFVVILNKNDLSTIVTS 347 Query: 147 RLLEQA 152 LEQA Sbjct: 348 EELEQA 353 >gi|93007296|ref|YP_581733.1| tRNA modification GTPase TrmE [Psychrobacter cryohalolentis K5] gi|92394974|gb|ABE76249.1| tRNA modification GTPase trmE [Psychrobacter cryohalolentis K5] Length = 487 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 15/177 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR ++ V + DT G+ + Sbjct: 242 VVLAGRPNAGKSSLLNRLAGQERAIVTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETE 301 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN------IHDLLKEIAKRSSRLILILN 138 D+ ++ I + + I AD++ +V D R+L+ L E+ + + RL++I N Sbjct: 302 DTVERIGIERARTAIAQADMLLMVYDVTRDLEEESTPLQLAEQLFGELPE-AKRLLIIAN 360 Query: 139 KIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 K D + E Q EI N+ + VS G G DD++ LC+ + P Sbjct: 361 KSDLLNNNSSKEITSISQQEIHNRGY---EQVNVSCETGAGIDDLVETLCAKVGFHP 414 >gi|332522452|ref|ZP_08398704.1| tRNA modification GTPase TrmE [Streptococcus porcinus str. Jelinkova 176] gi|332313716|gb|EGJ26701.1| tRNA modification GTPase TrmE [Streptococcus porcinus str. Jelinkova 176] Length = 458 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S +K AD+V LV+++ L + LL E+++ S+RLIL LNK Sbjct: 282 IRDTDDLVEKIGVERSKKALKEADLVLLVLNASEPLTLQDRTLL-ELSQESNRLIL-LNK 339 Query: 140 IDCVKPERL 148 D PER+ Sbjct: 340 TDL--PERI 346 >gi|254496976|ref|ZP_05109812.1| GTP-binding protein Era [Legionella drancourtii LLAP12] gi|254353800|gb|EET12499.1| GTP-binding protein Era [Legionella drancourtii LLAP12] Length = 125 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 71/123 (57%), Gaps = 3/123 (2%) Query: 186 LPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSIL-I 244 +P P ++ DQ++D P AE+ REK+F +E+PY+ V E + K +G+++ I Sbjct: 1 MPEGPHLFPDDQLTDRPTKFLCAELLREKIFRFCGQELPYAVTVDIESF--KDEGNLVRI 58 Query: 245 RQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPKC 304 +I VE+ + K++++G GQ +K ++ A+ ++ ++L + V L + KV+ W D + Sbjct: 59 HALILVEKDNHKRMIIGDKGQKLKEMATSARLDMEKLLGKKVFLQCWCKVKSGWADDERM 118 Query: 305 CPQ 307 Q Sbjct: 119 LKQ 121 >gi|205422352|sp|Q1Q7V4|MNME_PSYCK RecName: Full=tRNA modification GTPase mnmE Length = 478 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 15/177 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR ++ V + DT G+ + Sbjct: 233 VVLAGRPNAGKSSLLNRLAGQERAIVTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETE 292 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN------IHDLLKEIAKRSSRLILILN 138 D+ ++ I + + I AD++ +V D R+L+ L E+ + + RL++I N Sbjct: 293 DTVERIGIERARTAIAQADMLLMVYDVTRDLEEESTPLQLAEQLFGELPE-AKRLLIIAN 351 Query: 139 KIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 K D + E Q EI N+ + VS G G DD++ LC+ + P Sbjct: 352 KSDLLNNNSSKEITSISQQEIHNRGY---EQVNVSCETGAGIDDLVETLCAKVGFHP 405 >gi|146283357|ref|YP_001173510.1| GTP-binding protein EngA [Pseudomonas stutzeri A1501] gi|166225844|sp|A4VNW7|DER_PSEU5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145571562|gb|ABP80668.1| GTP-binding protein EngA [Pseudomonas stutzeri A1501] gi|327481749|gb|AEA85059.1| GTP-binding protein EngA [Pseudomonas stutzeri DSM 4166] Length = 499 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEAKWQGRTYIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD V +VDS L + + + KR+ R L+ NK+D V Sbjct: 64 EEGIDAKMAEQSLQAIEEADAVLFMVDSRAGLTAADQMIGEHLRKRNKRCFLVANKVDSV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +AE + + + ++A G G +L P Sbjct: 124 DPD--IARAEFSP--LGLGDALPIAAAHGRGISHMLEQALGIFP 163 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + IV + TTR + E + +DT G+ Sbjct: 206 IAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDEEKYTLIDTAGVRRRG 265 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V V+D+ + + +LL + + L++ LNK D Sbjct: 266 KIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIALNKWD 325 Query: 142 CV-KPERLLEQAEIANKLVFIEKT--FMVSATKGHGC 175 + + E+ + E+ +L F++ +SA G G Sbjct: 326 GMEQGEKDYVKTELERRLFFVDYADIHFISAKHGTGV 362 >gi|94501615|ref|ZP_01308132.1| tRNA modification GTPase [Oceanobacter sp. RED65] gi|94426298|gb|EAT11289.1| tRNA modification GTPase [Oceanobacter sp. RED65] Length = 455 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 9/162 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G +IVTH TTR ++R + + +DT G+ +A Sbjct: 218 TVVIAGRPNAGKSSLLNALAGRDTAIVTHIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 D ++ I +W I+ AD V L+VDS + + E + R+ +I NK+ Sbjct: 278 PDEVERIGIERAWQEIEQADRVLLMVDSTETDATDPKSIWPEFVDKLPHPERITVIRNKV 337 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D + +++A + +V ++A +G G ++ +L Sbjct: 338 DLTNEKAGMDEATQNSPIV------RLAAKQGDGVTELREHL 373 >gi|209694322|ref|YP_002262250.1| GTP-binding protein EngA [Aliivibrio salmonicida LFI1238] gi|238058970|sp|B6EGZ1|DER_ALISL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|208008273|emb|CAQ78418.1| GTP-binding protein [Aliivibrio salmonicida LFI1238] Length = 500 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRVTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L + + K + R L++NKID + Sbjct: 64 EEGVETKMAEQSLAAIEEADVVLFMVDGRAGLTSSDEAIAKHLRSREKPTFLVVNKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + AE + + K + ++A+ G G +L L LAP++ Sbjct: 124 DAD--AASAEFWQ--LGMSKVYQIAASHGRGVTSLLE-----LALAPFM 163 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 8/178 (4%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 ++T + KDF + + +A++G N GKSTL+NR +G + +V TTR + I Sbjct: 193 DLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLINRILGEERVVVYDMPGTTRDSIY-I 251 Query: 65 VSEKESQ-IVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 E+E Q V +DT G+ ++ K + + I+ A++V LV+D+ + Sbjct: 252 PMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAIEDANVVLLVIDARENISDQDL 311 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 LL L++ +NK D + E + ++E+ +L F++ + +SA G G Sbjct: 312 SLLGFALNAGRSLVIAVNKWDGLNNEVKEKVKSELDRRLGFVDFARLHFISALHGTGV 369 >gi|226946062|ref|YP_002801135.1| GTP-binding protein EngA [Azotobacter vinelandii DJ] gi|259645867|sp|C1DE52|DER_AZOVD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226720989|gb|ACO80160.1| Small GTP-binding protein EngA [Azotobacter vinelandii DJ] Length = 491 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTKTRDAIVAEYAGLTRDRQYGEAKWQGRTYIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD V +VDS + + + + KR+ R L+ NK+D V Sbjct: 64 EEGIDAKMAEQSLQAIEEADAVLFMVDSRAGMTAADQLIAEHLRKRNKRSFLVANKVDTV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +AE + + + ++A G G + +L P Sbjct: 124 DPD--IARAEFSP--LGLGDALPIAAAHGRGINAMLEAALGIFP 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDEDKYTLIDTAGVRRRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V V+D+ + + +LL + + L++ LNK D Sbjct: 258 KIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLLGFVLETGRALVIALNKWD 317 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 ++P +R + E+ +L+F + +SA G G Sbjct: 318 GMEPGQRDYVKIELERRLMFADFADIHFISALHGTGV 354 >gi|270158409|ref|ZP_06187066.1| tRNA modification GTPase TrmE [Legionella longbeachae D-4968] gi|289166752|ref|YP_003456890.1| GTPase [Legionella longbeachae NSW150] gi|269990434|gb|EEZ96688.1| tRNA modification GTPase TrmE [Legionella longbeachae D-4968] gi|288859925|emb|CBJ13911.1| GTPase [Legionella longbeachae NSW150] Length = 452 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 39/196 (19%) Query: 5 EITFFNEHK------------DFVQDNSRSG-------CVALVGATNAGKSTLVNRFVGA 45 EI F N+ K D ++ + G V + G NAGKSTL+N G Sbjct: 185 EIDFLNDGKVAQLLQNLLDKLDAIRSQANQGVILREGLSVVIAGRPNAGKSTLINCLAGR 244 Query: 46 KVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV 105 V+IVT TTR ++R + + + +DT G+ ++ D K I+ +W +K AD V Sbjct: 245 DVAIVTEIAGTTRDVMREHILLDDIPLHIIDTAGLRDSDDIVEKEGIKRAWEELKKADCV 304 Query: 106 CLVVDSHRELKVNIHDLLKEIAKRSS-----RLILILNKIDCVKPERLLEQAEIANKLVF 160 LVVD + +L+++ HDL +EI R+S +I + NKID L A++ N V+ Sbjct: 305 LLVVDIN-DLELH-HDLSQEI--RTSLPAEVPIITLFNKIDT-----LGRSAQVENHSVY 355 Query: 161 IEKTFMVSATKGHGCD 176 + A G G D Sbjct: 356 L------CAKSGEGVD 365 >gi|163814995|ref|ZP_02206382.1| hypothetical protein COPEUT_01148 [Coprococcus eutactus ATCC 27759] gi|158449678|gb|EDP26673.1| hypothetical protein COPEUT_01148 [Coprococcus eutactus ATCC 27759] Length = 459 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N FVG +IVT TTR + IV+ + + +DT GI D Sbjct: 227 IVGKPNAGKSSLLNMFVGEDRAIVTDMAGTTRDTLSEIVNVRGITLNIIDTAGIRETDDL 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC-VKP 145 K+ + + ++ AD+V VVD EL N ++++I R +I+I+NK D +K Sbjct: 287 VEKIGVDKAIKSVDKADLVLYVVDGSVELDENDQRIIEKI--RDKNVIVIINKSDLEIKI 344 Query: 146 ER 147 ER Sbjct: 345 ER 346 >gi|126732584|ref|ZP_01748381.1| GTP-binding protein EngA [Sagittula stellata E-37] gi|126706868|gb|EBA05937.1| GTP-binding protein EngA [Sagittula stellata E-37] Length = 488 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 11/181 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ NA Sbjct: 4 SLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLENA 63 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS M RL+ + AD+ ++D+ L + H + + KR+ +I+ NK + Sbjct: 64 NDDSLPARMRRLTERAVDMADVCLFLIDARAGLLPDDHVFAEILRKRAKHVIIAANKAEG 123 Query: 143 VKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 + + E E+ + + +SA G G D+ + L LPLA + A + D Sbjct: 124 SAADAGVFEAFELG-----LGEPLRLSAEHGEGMPDLYSVL---LPLAEG-FDAARAGDT 174 Query: 202 P 202 P Sbjct: 175 P 175 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 28/170 (16%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG NAGKSTL+N +G + + TR + + DT G+ Sbjct: 202 IAVVGRPNAGKSTLINHIIGEDRLLTGPEAGITRDAISLTHEWGGVPMRIFDTAGMRRRS 261 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 262 KVQEKLEKLSVSDGIRAVKFAEVVVVLLDA--AIPFETQDLKIADLAEREGRAVVVAVNK 319 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTF-------------MVSATKGHGCD 176 D + E KL ++ + F VSA G G D Sbjct: 320 WDI--------EGEKQEKLKWLREQFEHVLPQLRGAPLVTVSARTGKGLD 361 >gi|298375973|ref|ZP_06985929.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_19] gi|298267010|gb|EFI08667.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_19] Length = 461 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV++ TTR ++ ++ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNALLNEDKAIVSNIHGTTRDVIEDTININGQLFRFIDTAGIRETS 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I S+ + A IV L+ D R+LK + +EIA R + +IL +NK D Sbjct: 284 DTIEALGIERSFKALDQAQIVILMYDLTRDLK-DFETFYQEIAPRLTNKSVILAMNKCDV 342 Query: 143 VKPERL 148 + L Sbjct: 343 LPASSL 348 >gi|326624338|gb|EGE30683.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 504 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 15/185 (8%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FFNE + V VALVG N GKSTL NR + ++V TR G Sbjct: 8 FFNEALNMVP------VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEV 61 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + + + +DT GI +D M S I+ AD+V +VD+ L + K + Sbjct: 62 EGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLR 121 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R L+ NK D + P +QA + + + + + ++A+ G G +L ++ Sbjct: 122 SREKPTFLVANKTDGLDP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV----- 172 Query: 188 LAPWV 192 L PW+ Sbjct: 173 LLPWM 177 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 219 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 278 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 279 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 338 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 339 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 379 >gi|257888103|ref|ZP_05667756.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733] gi|257896278|ref|ZP_05675931.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12] gi|293379359|ref|ZP_06625503.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1] gi|257824157|gb|EEV51089.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733] gi|257832843|gb|EEV59264.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12] gi|292641882|gb|EFF60048.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1] Length = 465 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ L LL+ A + + I++LNK Sbjct: 285 IRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATKGLKRIILLNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + E NKL+ E F +S K G D Sbjct: 343 TDL--PAQL--EQEKLNKLIENEPVFSISVAKNDGLD 375 >gi|254520702|ref|ZP_05132758.1| tRNA modification GTPase TrmE [Clostridium sp. 7_2_43FAA] gi|226914451|gb|EEH99652.1| tRNA modification GTPase TrmE [Clostridium sp. 7_2_43FAA] Length = 459 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 10/161 (6%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +A+VG N GKS+L+N + K +IVT TTR ++ ++ + +DT G Sbjct: 223 RDGLSLAIVGKPNVGKSSLLNVLLKEKRAIVTDIAGTTRDVIEEYINLDGIPVKIIDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S I AD+V LV+DS REL ++++ I ++S I++LNK Sbjct: 283 IRETEDIVEKIGVEKSKEKINEADLVLLVLDSSRELDKEDIEIIEAIKNKNS--IVLLNK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 ID E L+++ + N E +SA + G D + N Sbjct: 341 IDL---ENKLDKSLLNN----FENIIKISAKEDVGIDGLKN 374 >gi|169333910|ref|ZP_02861103.1| hypothetical protein ANASTE_00296 [Anaerofustis stercorihominis DSM 17244] gi|169259475|gb|EDS73441.1| hypothetical protein ANASTE_00296 [Anaerofustis stercorihominis DSM 17244] Length = 458 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS L+N + +IVT + TTR IV +V+ K + F+DT GI NA Sbjct: 225 VAIIGKPNVGKSQLLNALINENKAIVTEEAGTTRDIVDEVVNIKGVPVKFIDTAGIRNAD 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ I S ++ ++I+ +D+ R L D++K + + ++++LNK+D Sbjct: 285 SKVEKIGIDKSIEMLEESNIILFCIDTSRALDTEDMDIIKMLPD-NKEVLVVLNKMD 340 >gi|227550631|ref|ZP_03980680.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium TX1330] gi|227180232|gb|EEI61204.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium TX1330] Length = 492 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 252 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 311 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ L LL+ A + + I++LNK Sbjct: 312 IRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATKGLKRIILLNK 369 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + E NKL+ E F +S K G D Sbjct: 370 TDL--PAQL--EQEKLNKLIENEPVFSISVAKNDGLD 402 >gi|257456513|ref|ZP_05621709.1| GTP-binding protein era homolog [Treponema vincentii ATCC 35580] gi|257446173|gb|EEV21220.1| GTP-binding protein era homolog [Treponema vincentii ATCC 35580] Length = 72 Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 43/59 (72%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V ++G +AGKST +N G VSIV+ QTTRS VRGI++ ++ QI+FLDTPG Sbjct: 7 RSGVVCIIGRPSAGKSTFLNSVCGKTVSIVSALPQTTRSSVRGILTAEQGQIIFLDTPG 65 >gi|262196911|ref|YP_003268120.1| ribosome-associated GTPase EngA [Haliangium ochraceum DSM 14365] gi|262080258|gb|ACY16227.1| ribosome-associated GTPase EngA [Haliangium ochraceum DSM 14365] Length = 518 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 6/168 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--N 82 +A+VG N GKSTL NR VG + ++V TR G S ++ +DT G+ Sbjct: 6 IAIVGRPNVGKSTLYNRLVGGRPALVHDTPGLTRDRRYGAFSYMGHRLRLVDTGGLDPEA 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AK+ + R + + ++ A+ V V+D+ + H++ ++ K L++ NK+D Sbjct: 66 AKEVIGAGIHRQADAALQEANAVLFVLDATAGITPLDHEVASKLRKLDKPLLVCANKVDH 125 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 K E L AE+ + + + VSAT G G DD+L L +TL L P Sbjct: 126 AKREVL--TAELFA--LGLGDVYPVSATHGRGVDDMLEALVATLGLPP 169 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 11/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G NAGKS+LVNR VG++ S+V H+ TT V V +DT GI Sbjct: 244 VAMLGKPNAGKSSLVNRLVGSERSLVHHQPGTTMDPVDTPFEFAGRSYVLVDTAGIRRRA 303 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K+ + ++ S I+ ADIV LV+D +L + D L + + S R L++ +NK Sbjct: 304 RVEAETEKIAVSMAISQIERADIVVLVIDG--KLGPSEQDARLAGLVEDSGRGLVVAVNK 361 Query: 140 IDCVKPERLLE--QAEIANKLVFIEKTFM--VSATKGHGCDDVLN 180 +D + ++ +++ L F+ M VSA +G G D+L+ Sbjct: 362 VDLLSGVGAGSKVKSALSDTLHFLSYAPMVLVSALRGDGVADLLS 406 >gi|110802832|ref|YP_699904.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101] gi|123047103|sp|Q0SPQ3|MNME_CLOPS RecName: Full=tRNA modification GTPase mnmE gi|110683333|gb|ABG86703.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101] Length = 458 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 10/159 (6%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + +VG N GKS+L+N + +IVT TTR ++ ++ + +DT G Sbjct: 222 RDGLSMVIVGKPNVGKSSLLNALLNENRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S I AD+V L++D+ REL +++ I R + I++LNK Sbjct: 282 IRETEDVVEKIGVEKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDR--KYIVLLNK 339 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +D +R L +EI + L E +SA G G DD+ Sbjct: 340 VDL---DRKL-SSEIVDNL---ENKIELSAKTGFGIDDL 371 >gi|34499858|ref|NP_904073.1| tRNA modification GTPase TrmE [Chromobacterium violaceum ATCC 12472] gi|46577367|sp|Q7NPT9|MNME_CHRVO RecName: Full=tRNA modification GTPase mnmE gi|34105708|gb|AAQ62062.1| thiophene and furan oxidation protein ThdF [Chromobacterium violaceum ATCC 12472] Length = 450 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L+N G ++IVT TTR VR + + +DT G+ + Sbjct: 222 VVLVGQPNVGKSSLMNALAGDDIAIVTDIAGTTRDTVREEIVIDGVPVHIIDTAGLRDTD 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K+ I +W ++ AD+ L+VDS L + +L+ + R + + NK+D Sbjct: 282 DVVEKIGIERTWQAVERADLALLLVDSREGLTAEVQSILERLPPALPR-VQVFNKVD 337 >gi|156743087|ref|YP_001433216.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941] gi|156234415|gb|ABU59198.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941] Length = 454 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 7/189 (3%) Query: 5 EITFFNEHKDFVQDNSR-SG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I + H++ ++ R SG VA+VG TNAGKSTL+N GA V T Sbjct: 204 QIEEVHRHREVYRERRRQSGIPVVAIVGYTNAGKSTLLNALSGANVRAEDRLFATLDPTT 263 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKV 117 R + QI+ DT G ++ R + I+ AD+V V+D + + Sbjct: 264 RQVTLPGGQQILLTDTVGFIQKLPTHLVAAFRATLEEIREADVVLHVLDITHPNAAQQTQ 323 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 + D L+++ + +LNK+D + E IA L + VSA KG G D Sbjct: 324 TVLDTLRDLQVEDRPTLTVLNKVDLMVGINEAEVGSIAETLGMPDDYVAVSARKGWGLDT 383 Query: 178 VLNYLCSTL 186 +L + TL Sbjct: 384 LLRRIEQTL 392 >gi|170077787|ref|YP_001734425.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002] gi|205829178|sp|B1XKC3|MNME_SYNP2 RecName: Full=tRNA modification GTPase mnmE gi|169885456|gb|ACA99169.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002] Length = 460 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 11/179 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + + +IVT TTR +V + + + LDT G Sbjct: 219 RTGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVQGIPVQVLDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILIL 137 I + +D+ K+ + S + + AD++ +D+ ++ + I K + LILIL Sbjct: 279 IRDTEDAVEKIGVARSLAASQQADLILFTIDAAVGWTAADQEIFQRIVATKANQPLILIL 338 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID +PE + EI ++ + KT +A + G D+ L + L A V +AD Sbjct: 339 NKIDIGQPEAI----EIPPQVQGVVKT---AAAQHQGVDE-LETAIANLVQAGKVGAAD 389 >gi|75674297|ref|YP_316718.1| tRNA modification GTPase TrmE [Nitrobacter winogradskyi Nb-255] gi|123614357|sp|Q3SWH5|MNME_NITWN RecName: Full=tRNA modification GTPase mnmE gi|74419167|gb|ABA03366.1| tRNA modification GTPase trmE [Nitrobacter winogradskyi Nb-255] Length = 456 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 19/169 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G NAGKSTL+NR + +IV+ TTR I+ + + +DT GI Sbjct: 220 TVAIAGPPNAGKSTLLNRLARREAAIVSPHAGTTRDIIEVYLDLDGYPVTLIDTAGIRET 279 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + +R + + AD+V + D H + + I + L LI NKID Sbjct: 280 DDPVEQEGVRRARDRVAKADLVLWLSDDHG------GEPDQTIRSGETSLWLIRNKIDLA 333 Query: 144 KPERLLEQAEIANKLVFIEKT--------FMVSATKGHGCDDVLNYLCS 184 PE + A F K F +SA++G G DD+++ L + Sbjct: 334 GPEN-----DGAKPGRFETKAGQSAPPWRFRISASRGDGVDDLVSALTA 377 >gi|256823856|ref|YP_003147819.1| tRNA modification GTPase TrmE [Kangiella koreensis DSM 16069] gi|256797395|gb|ACV28051.1| tRNA modification GTPase TrmE [Kangiella koreensis DSM 16069] Length = 452 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 12/166 (7%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G Sbjct: 213 REGMTVVIAGKPNAGKSSLLNTLAGKESAIVTEIAGTTRDVLREHIHIDGLPVHIIDTAG 272 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSSRLILI 136 + + D+ K+ I +W I AD + LV D+ H+ + I + + +L+++ Sbjct: 273 LRESDDTVEKIGIERAWQEIDKADQIVLVADASETHQFVPHEIDPAFTKFEQFKDKLLIV 332 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 NK+D L +Q E+ + + K +SA G G +++ N L Sbjct: 333 ANKVD------LTDQLELPDATEY--KVLPLSAKTGQGIEELKNTL 370 >gi|78213961|ref|YP_382740.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605] gi|123577422|sp|Q3AGU7|MNME_SYNSC RecName: Full=tRNA modification GTPase mnmE gi|78198420|gb|ABB36185.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605] Length = 450 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 4/141 (2%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 +E+ ++ E D ++ R VALVG N GKS+L+NR + +IVT TTR + Sbjct: 203 LELQQLVRDGERGDALRQGLR---VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDL 259 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + + + I LDT GI + D+ +L I S + AD+V LV+D H Sbjct: 260 LESEIVLEGVPITLLDTAGIRSTDDAVEQLGIARSEQALATADVVLLVLDGHAGWTAEDA 319 Query: 121 DLLKEIAKRSSRLILILNKID 141 LL I + R IL+ NK D Sbjct: 320 ALLARIPAQIPR-ILVANKAD 339 >gi|315637145|ref|ZP_07892368.1| ribosome-associated GTPase EngA [Arcobacter butzleri JV22] gi|315478681|gb|EFU69391.1| ribosome-associated GTPase EngA [Arcobacter butzleri JV22] Length = 485 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 4/165 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+G N GKS+L NR +++IV+ TTR I + + + + +DT GI + Sbjct: 8 IALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRDIRKHEIEILDRVGLLVDTGGIDDTN 67 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D+ + R + T K ADI+ +VD +L E+ + L L++NKID K Sbjct: 68 DAIFSNVKRKAIETAKEADIILFMVDGKNIPDDKDKELFYELQRLGKELALVVNKIDNDK 127 Query: 145 P-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ERL E E + E F +S + G + ++ LP+ Sbjct: 128 ELERLWEFFEFG---IGDENLFGISVSHNRGTKLLFEWIYKHLPV 169 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 10/123 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 VA++G N GKS+++N VGA+ S+V+ TT V KE QI F+DT G+ Sbjct: 220 VAIIGRVNVGKSSILNAIVGAERSVVSPIAGTTIDPVDESFEYKEKQITFVDTAGLRRRG 279 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILN 138 + + K + + ++ A++ +V+D+ REL DL ++IA + I++LN Sbjct: 280 SIEGIEKYALMRTKEMLEKANMALVVLDASRELT----DLDEKIAGLVDEYGLGTIIVLN 335 Query: 139 KID 141 K D Sbjct: 336 KWD 338 >gi|13508307|ref|NP_110257.1| small GTPase Era involved in regulating metabolism and cell division [Mycoplasma pneumoniae M129] gi|2495117|sp|P75210|ERA_MYCPN RecName: Full=GTPase Era gi|1673945|gb|AAB95922.1| small GTPase ERA involved in regulating metabolism and cell division [Mycoplasma pneumoniae M129] gi|301633322|gb|ADK86876.1| GTP-binding protein Era [Mycoplasma pneumoniae FH] Length = 291 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 31/293 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNA 83 + ++G TNAGKSTLVN+ A +V+ TT ++ ++ ++ I F+D PG Sbjct: 6 IGVLGLTNAGKSTLVNQLHKANNLLVSPMNNTTLLAVSTNTITHEKQNITFIDVPGFSEK 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 + S ++L+ + + D++ LVV S ++ K+ + + KR +R++LI N Sbjct: 66 RHSSYELISQEIRKALSGIDVLLLVVRSDQQQKLPLLQTQLQPLKRYRDLTRVLLINNFF 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST-------LPLAPWVY 193 D V QAE +V K V T D+L++ ++ + L + Sbjct: 126 DVVL------QAEDKQAIVLDFKPQAVLET------DLLHFDATSFWNQFNEVKLQANEF 173 Query: 194 SAD-QISDLPMFHF-TAEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVIYV 250 D + D +F E RE++ + +EIP+ + + +K ++ + + I V Sbjct: 174 RKDVEFLDADTDNFKILEALREQIIKYCSEEIPHVVRLEIVDKSFDQAKNLLKLHLSISV 233 Query: 251 ERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 + SQKKI++G+N Q +K I ++ ++++ E + V + LFV+ +DPK Sbjct: 234 PKLSQKKIIIGRNAQMVKKIGMQMRQKLLEYYDCNVFVELFVRT-----YDPK 281 >gi|300934024|ref|ZP_07149280.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium resistens DSM 45100] Length = 811 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + + + DT G Sbjct: 378 TVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWTGRRFWVQDTGGWDPD 437 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + R + + + AD++ VVD+ + + +++ + S +IL+ NK D Sbjct: 438 AKGIHAAIARQAETAMDTADVIVFVVDTKVGITATDEVIARKLQRSSIPVILVANKFDS- 496 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + AE + + F VSA G G DVL+ + S P P Sbjct: 497 -DSQYADMAEFWG--LGLGNPFPVSAQHGRGAADVLDQVLSDFPDQP 540 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 9/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G + S+V + TT V IV E F+DT GI Sbjct: 552 VALVGRPNVGKSSLLNKVTGEERSVVDNVAGTTVDPVDSIVELDEHTWRFVDTAGIRKKT 611 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + Y L R + I A++ +VD+ + +L+ I L++ N Sbjct: 612 KTARGHEFYASLRTR---AAIDAAEVAIFLVDASEPIAEQDQRVLRLILDSGKALVVAYN 668 Query: 139 KIDCVKPERLLE 150 K D V +R E Sbjct: 669 KWDLVDEDRRWE 680 >gi|205422284|sp|A5UY19|MNME_ROSS1 RecName: Full=tRNA modification GTPase mnmE Length = 461 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 15/179 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G AL+G NAGKS+L+N + +IVT TTR + S +V DT G Sbjct: 214 RQGARAALIGRPNAGKSSLLNALLRVDRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILIL 137 I + D +L + S ++ AD+ LVVD + + + D +EI + R IL L Sbjct: 274 IVESDDPVERLGVARSRQAVRLADLALLVVD----VSLPVADDDREIVALTEEKRTILTL 329 Query: 138 NKIDCVKPERLL------EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID + +R + E +I K + VSA G G D++ + L AP Sbjct: 330 NKIDLIDADRSIIAARQREYEQIRGK--AFDAMVTVSALTGQGLDELGATVARLLLGAP 386 >gi|157737421|ref|YP_001490104.1| GTP-binding protein EngA [Arcobacter butzleri RM4018] gi|157699275|gb|ABV67435.1| GTP-binding protein [Arcobacter butzleri RM4018] Length = 485 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 4/165 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+G N GKS+L NR +++IV+ TTR I + + + + +DT GI + Sbjct: 8 IALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRDIRKHEIEILDRVGLLVDTGGIDDTN 67 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D+ + R + T K ADI+ +VD +L E+ + L L++NKID K Sbjct: 68 DAIFSNVKRKAIETAKEADIILFMVDGKNIPDDKDKELFYELQRLGKELALVVNKIDNDK 127 Query: 145 P-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ERL E E + E F +S + G + ++ LP+ Sbjct: 128 ELERLWEFFEFG---IGDENLFGISVSHNRGTKLLFEWIYKHLPV 169 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 10/123 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 VA++G N GKS+++N VGA+ S+V+ TT V KE QI F+DT G+ Sbjct: 220 VAIIGRVNVGKSSVLNAIVGAERSVVSPIAGTTIDPVDESFEYKEKQITFVDTAGLRRRG 279 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILN 138 + + K + + ++ A++ +V+D+ REL DL ++IA + I++LN Sbjct: 280 SIEGIEKYALMRTKEMLEKANMALVVLDASRELT----DLDEKIAGLVDEYGLGTIIVLN 335 Query: 139 KID 141 K D Sbjct: 336 KWD 338 >gi|220906981|ref|YP_002482292.1| GTP-binding protein EngA [Cyanothece sp. PCC 7425] gi|254783149|sp|B8HQE1|DER_CYAP4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219863592|gb|ACL43931.1| small GTP-binding protein [Cyanothece sp. PCC 7425] Length = 453 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR G +V+IV + TR ++ + +DT G+ A Sbjct: 5 VVAIVGRPNVGKSTLVNRLTGERVAIVHDQPGVTRDRTYRPSFWQDRDFLVVDTGGLVFA 64 Query: 84 KDSYHKLMIRLSWST-IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ +IR T + A + LVVD + + ++ + + ++S +++ +NK C Sbjct: 65 DDTEFLPLIRQQVVTALSEARVAILVVDGQQGITAADEEIAQWLRQQSLPVLVAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P++ L Q +L E F +SA G+G ++L+ + S LP Sbjct: 123 ESPQQGLAQGAEFWELGLGEP-FPISAIHGNGTGELLDQVVSYLP 166 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 9/155 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N VG + +IV+ TTR + +V + +DT GI K Sbjct: 180 VAIVGRPNVGKSSLLNAVVGEQRAIVSPISGTTRDAIDTLVERDGQRYRLIDTAGIRKQK 239 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ A++V LV+D+ + L I ++++NK D Sbjct: 240 NVDYGPEFFGINRAFKAIQRAEVVLLVLDALDGVTEQDQKLAGRIVDEGCACVIVVNKWD 299 Query: 142 CVKPERLL---EQAEIANKLVFI---EKTFMVSAT 170 V+ + Q ++ +L FI + F+ +AT Sbjct: 300 AVEKDSYTIYDYQHQVEQRLNFIGWSDHIFISAAT 334 >gi|268608007|ref|ZP_06141738.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1] Length = 442 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ +G ++SIV TR + + + + +DT GI ++ Sbjct: 6 VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYSKCEWRGKEFMVVDTGGIEPDS 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R S I+ AD++ V D + + + + + + K ++L +NK+D + Sbjct: 66 DDVILSQMRRQSELAIEKADVIVFVTDIRCGVTADDYTVAQMLLKSGKPIVLAVNKVDNL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E LE E N + + F +S+ GHG D+L+ + LP + Sbjct: 126 G-EPPLELYEFYN--LGLGDPFPISSVHGHGTGDMLDKVYEYLPAS 168 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKS+L+N+ G + IV+ TTR ++ ++ + VF+DT GI Sbjct: 180 VAVIGKPNAGKSSLINKIAGEERVIVSDIAGTTRDSTDTVIENEQGKFVFIDTAGIRKKS 239 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDS 111 K+ + ++ + AD+ +++D+ Sbjct: 240 KVTEKIEHYSVLRAYMAVDRADVCVIMLDA 269 >gi|59711240|ref|YP_204016.1| GTP-binding protein EngA [Vibrio fischeri ES114] gi|197336109|ref|YP_002155390.1| ribosome-associated GTPase EngA [Vibrio fischeri MJ11] gi|81311005|sp|Q5E768|DER_VIBF1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238690264|sp|B5FAX6|DER_VIBFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|59479341|gb|AAW85128.1| predicted GTP-binding protein [Vibrio fischeri ES114] gi|197317599|gb|ACH67046.1| ribosome-associated GTPase EngA [Vibrio fischeri MJ11] Length = 500 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I+ AD+V +VD L + K + R L++NKID + Sbjct: 64 EQGVETKMAEQSLAAIEEADVVLFMVDGRAGLTSADEAIAKHLRSREKPTFLVVNKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + AE + + K + ++A+ G G +L L LAP++ Sbjct: 124 DAD--AASAEFWQ--LGMNKVYQIAASHGRGVTSLLE-----LALAPFM 163 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 8/178 (4%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 ++T + KDF + + +A++G N GKSTL NR +G + +V TTR + I Sbjct: 193 DLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIY-I 251 Query: 65 VSEKESQ-IVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 E+E Q V +DT G+ ++ K + + ++ A++V LV+D+ + Sbjct: 252 PMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAVEDANVVLLVIDARENISDQDL 311 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 LL L++ +NK D + + + ++E+ +L F++ + +SA G G Sbjct: 312 SLLGFALNAGRSLVIAVNKWDGLDNDVKEKVKSELDRRLGFVDFARIHFISALHGTGV 369 >gi|330721877|gb|EGG99837.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC2047] Length = 399 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 7/161 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+NR G +IV + TTR ++R + + +D G+ ++ Sbjct: 161 VVMAGLPNAGKSSLLNRLSGKDSAIVINIPGTTRDVLREHIHIDGMPLHIIDPAGLRDSP 220 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSRLILILNKID 141 D + IR +WS IK AD + LVVD+ + + HD+ + + S + +I NK D Sbjct: 221 DEIEQEGIRRAWSEIKKADRILLVVDASNVKETHPHDIWPDFVDHLEGLSNITVIQNKCD 280 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + E AE I +SA +G G D + N+L Sbjct: 281 LLNVEPAFINAEGDQSCPVIR----LSAKQGEGIDLLTNHL 317 >gi|197303809|ref|ZP_03168845.1| hypothetical protein RUMLAC_02548 [Ruminococcus lactaris ATCC 29176] gi|197297102|gb|EDY31666.1| hypothetical protein RUMLAC_02548 [Ruminococcus lactaris ATCC 29176] Length = 417 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + G NAGKS++VN G +++V++ K TT +V+ + +V +DTPGI + Sbjct: 14 IGFFGCRNAGKSSIVNAVTGQNLAVVSNVKGTTTDPVVKAMELLPAGPVVMIDTPGI-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 KL + S+ + D+ +V+D +K LLKEI KR I+ +NK D + Sbjct: 73 DGELGKLRVEKSYQMLNRTDLAIVVIDGGTGIKKEDFALLKEIEKRKVPFIIAVNKSDLL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 K R+ Q++ K V E VSA G G Sbjct: 133 KEHRI--QSKGRGK-VPEESLIYVSAETGEG 160 >gi|148657267|ref|YP_001277472.1| tRNA modification GTPase TrmE [Roseiflexus sp. RS-1] gi|148569377|gb|ABQ91522.1| tRNA modification GTPase trmE [Roseiflexus sp. RS-1] Length = 471 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 15/179 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G AL+G NAGKS+L+N + +IVT TTR + S +V DT G Sbjct: 224 RQGARAALIGRPNAGKSSLLNALLRVDRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILIL 137 I + D +L + S ++ AD+ LVVD + + + D +EI + R IL L Sbjct: 284 IVESDDPVERLGVARSRQAVRLADLALLVVD----VSLPVADDDREIVALTEEKRTILTL 339 Query: 138 NKIDCVKPERLL------EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID + +R + E +I K + VSA G G D++ + L AP Sbjct: 340 NKIDLIDADRSIIAARQREYEQIRGK--AFDAMVTVSALTGQGLDELGATVARLLLGAP 396 >gi|51598763|ref|YP_072951.1| GTP-binding protein EngA [Borrelia garinii PBi] gi|81825627|sp|Q661B2|DER_BORGA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51573334|gb|AAU07359.1| GTP-binding protein [Borrelia garinii PBi] Length = 433 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + AK SI TR +V + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDAKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + +++++ + K SS++IL+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDVN-EILLEDYEIIERLRKYSSKVILVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KEFL---AHKFHNLGF-KRYFLVSALHRRGITKLRDFL 159 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G ++SIV+ + TTR ++ ++ +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D EL + + K+ +I++ +K Sbjct: 236 RVNEVVEYYS--VNRALKVIDIVDIVFLLIDVEEELTSQDKKIAHYVTKKGKGIIIVFSK 293 Query: 140 IDCVKPER 147 D ++ + Sbjct: 294 WDLLEESK 301 >gi|254480079|ref|ZP_05093327.1| putative GTPase [marine gamma proteobacterium HTCC2148] gi|214039641|gb|EEB80300.1| putative GTPase [marine gamma proteobacterium HTCC2148] Length = 417 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VA+VG N GKSTLVNR +G +V + TTR + E + +DT G+ Sbjct: 128 VAVVGRPNVGKSTLVNRLLGEDRVVVFDEPGTTRDSIYIDYQRDEQEYTLIDTAGVRRRK 187 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N K + K I + I A +V LV+D+H + LL ++ L+L +NK D Sbjct: 188 NVKQTVEKFSIVKTLKAIDDAHVVILVMDAHEGIVDQDMHLLGHCIEKGRGLVLAVNKWD 247 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 ++P +R ++E+ +L F + T +SA G G Sbjct: 248 GIEPDQRDWIKSELGRRLAFADFADTHFISALHGTGV 284 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 10/116 (8%) Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DT GI +D M S I+ AD V +VD+ L L K + +R+ Sbjct: 3 IDTGGISGDEDGIDSEMADQSLVAIEEADAVLFLVDAREGLNPADQALAKHLRQRNKSFH 62 Query: 135 LILNKIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLP 187 L++NKID + A+IA+ + +E F ++A+ G G +++ + + P Sbjct: 63 LVVNKIDGL-------DADIASSDFYALGVESMFAIAASHGRGVRNMIGEVMANFP 111 >gi|294341965|emb|CAZ90394.1| tRNA modification GTPase trmE [Thiomonas sp. 3As] Length = 472 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 10/182 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ ++ Sbjct: 226 VVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVSQTIQIEGVPLHIVDTAGLRDSA 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSRLILILNKID 141 D+ ++ + SW I AD+V + D R EIA+ + + L+ + NK D Sbjct: 286 DAVERIGVERSWHAIAGADVVVFLHDLTRLQAPGYAQAEAEIARGLPKGAPLLHVFNKRD 345 Query: 142 CVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV---LNYLCSTLPLAPWVYSA 195 CV+ RLL Q A V ++ +SA G G ++ L L P + V+ A Sbjct: 346 CVETGAQARLLPQV-WAQWGVEAGESVWISAATGDGLQELRLKLLQLAGAQPTSEGVFIA 404 Query: 196 DQ 197 Q Sbjct: 405 RQ 406 >gi|256841233|ref|ZP_05546740.1| tRNA modification GTPase TrmE [Parabacteroides sp. D13] gi|256737076|gb|EEU50403.1| tRNA modification GTPase TrmE [Parabacteroides sp. D13] Length = 461 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNALLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETS 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I S+ + A IV L+ D R+LK + +EIA R + +IL +NK D Sbjct: 284 DTIEALGIERSFKALDQAQIVILMYDLTRDLK-DFEAFYQEIAPRLTNKSVILAMNKCDV 342 Query: 143 VKPERL 148 + L Sbjct: 343 LPASSL 348 >gi|190171188|gb|ACE63664.1| ThdF [Enterobacter cancerogenus] Length = 439 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D E I++ V +SA G G DD+ N+L Sbjct: 313 IARLPAKLPITVVRNKADVTG-----ETLGISD--VNGHSLIRLSARTGEGVDDLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|127514790|ref|YP_001095987.1| tRNA modification GTPase TrmE [Shewanella loihica PV-4] gi|166234821|sp|A3QJT0|MNME_SHELP RecName: Full=tRNA modification GTPase mnmE gi|126640085|gb|ABO25728.1| tRNA modification GTPase trmE [Shewanella loihica PV-4] Length = 453 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DSVQSSAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ ++ I +W+ I+ AD V +VD V+ HD+ + Sbjct: 260 LDGMPLHIIDTAGLRDTTDTVEQIGIERAWAEIETADQVLFMVDGTTTDAVDPHDIWPDF 319 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L E +K+ F +SA G G D++ +L Sbjct: 320 IDRLPKNLGVTVVRNKAD-LTGESLDATDEQGHKV------FRLSAKTGSGVDELKAHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|319442278|ref|ZP_07991434.1| bifunctional cytidylate kinase/GTPase Der [Corynebacterium variabile DSM 44702] Length = 567 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + I + DT G Sbjct: 131 TVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYIGDWGGRRFWVQDTGGWDPD 190 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + + + AD++ VVD+ KV I + IA+R R ++L+ NK Sbjct: 191 AKGIHGAIARQAETAMATADVIVFVVDT----KVGITATDEIIARRLQRSEIPVVLVANK 246 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D + + AE + + + + VSA G G DVL+ + ++ P P Sbjct: 247 FDS--DSQYGDMAEFWS--LGLGDPYPVSAQHGRGAADVLDQVLASFPETP 293 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G S+V + TT V +V ++ F+DT GI Sbjct: 305 VALVGRPNVGKSSLLNKITGEDRSVVDNVAGTTVDPVDSVVELEQQMWRFVDTAGIRKKT 364 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + Y L R + I A++ +VD+ + +L+ I L++ N Sbjct: 365 KTARGHEFYASLRTR---AAIDSAEVAIFLVDASEPIAEQDQRVLRMILDSGRALVVAYN 421 Query: 139 KIDCVKPER 147 K D V +R Sbjct: 422 KWDLVDEDR 430 >gi|261341633|ref|ZP_05969491.1| hypothetical protein ENTCAN_08099 [Enterobacter cancerogenus ATCC 35316] gi|288315988|gb|EFC54926.1| tRNA modification GTPase TrmE [Enterobacter cancerogenus ATCC 35316] Length = 454 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D E I++ V +SA G G DD+ N+L Sbjct: 321 IARLPAKLPITVVRNKADVTG-----ETLGISD--VNGHSLIRLSARTGEGVDDLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|198283717|ref|YP_002220038.1| GTP-binding protein EngA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667499|ref|YP_002426346.1| ribosome-associated GTPase EngA [Acidithiobacillus ferrooxidans ATCC 23270] gi|226741127|sp|B7JC34|DER_ACIF2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238690897|sp|B5EJF7|DER_ACIF5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|198248238|gb|ACH83831.1| small GTP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519712|gb|ACK80298.1| ribosome-associated GTPase EngA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 449 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 7/173 (4%) Query: 13 KDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 +D D +R G +A++G N GKSTLVN +G K +V + TTR +R + Sbjct: 167 EDDTADAARKGPRIAMLGRPNVGKSTLVNTMLGEKRVLVFDEPGTTRDSIRIPYERQGKP 226 Query: 72 IVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 V +DT G+ + KL + + S ++ AD+V LV+D+ + L+ + Sbjct: 227 YVMIDTAGMRRRARVGEGLEKLSVLKTLSALREADVVLLVLDARLGIAEQDAHLVGVAVE 286 Query: 129 RSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 +++++NK D + P ER + E+ +L FI + +SA G G D+ Sbjct: 287 LGRPIVVVVNKWDGMTPEERKAVKQELERRLDFIRYAPVYTISALHGTGVGDL 339 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 5/167 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 + +ALVG N GKST NR + ++V TR G + Q + +DT G Sbjct: 2 TAVIALVGRPNVGKSTFFNRLTRTREALVADLPGLTRDRHYGTAQFEGRQYLVVDTGGFE 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ M + I AD +C +VD+ L ++ +E+ + + L++NK+ Sbjct: 62 PEEREGLVAAMAAQTRLAITEADAICFLVDAKEGLSTQDAEIAQELRRGGKPIYLVVNKM 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + E E + + + +SA GHG + +L + S LP Sbjct: 122 DAKGA--VSELPEFYR--LGLGTPYTISAAHGHGVEPLLEAIFSDLP 164 >gi|262383614|ref|ZP_06076750.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_33B] gi|262294512|gb|EEY82444.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_33B] Length = 461 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNALLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETS 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I S+ + A IV L+ D R+LK + +EIA R + +IL +NK D Sbjct: 284 DTIEALGIERSFKALDQAQIVILMYDLTRDLK-DFEAFYQEIAPRLTNKSVILAMNKCDV 342 Query: 143 VKPERL 148 + L Sbjct: 343 LPASSL 348 >gi|229496957|ref|ZP_04390662.1| ribosome-associated GTPase EngA [Porphyromonas endodontalis ATCC 35406] gi|229316059|gb|EEN81987.1| ribosome-associated GTPase EngA [Porphyromonas endodontalis ATCC 35406] Length = 436 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 13/171 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKSTL NR VG++ +IVT TTR G + + +DT G + Sbjct: 2 SNLVAIVGRPNVGKSTLFNRLVGSRQAIVTEISGTTRDRQYGHTNWTGHEFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILI 136 ++D + + + I+ AD++ VVD + + DL +E+A +R+ + ++L+ Sbjct: 62 SGSEDVFESEINKQVQIAIEEADVILFVVD----VMAGMTDLDREVAGLLRRAKKPILLV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D E + AE + + + +SA G G D+L+ + ++LP Sbjct: 118 ANKADTF--EIGYQSAEFY--ALGLGDPYAISAINGSGTGDLLDAIVNSLP 164 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 10/136 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN--- 82 A+VG NAGKS+L+N F+G + +IVT+ TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSLINAFIGEERNIVTNVAGTTRDSIYTEYNKFGFSFYLVDTAGIRKRGK 238 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D + +IR S I+++DI ++D R ++ ++L + + S L++ +NK D Sbjct: 239 VQEDLEYYSVIR-SIRAIENSDICIAMIDVTRGIESQDVNILSLVMRNSKGLVVCVNKWD 297 Query: 142 CVKPE-----RLLEQA 152 V+ + R+ E+A Sbjct: 298 LVENKTNEAIRVFEEA 313 >gi|33866852|ref|NP_898411.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8102] gi|46577381|sp|Q7U3V6|MNME_SYNPX RecName: Full=tRNA modification GTPase mnmE gi|33639453|emb|CAE08837.1| putative thiophen / furan oxidation protein [Synechococcus sp. WH 8102] Length = 450 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 78/166 (46%), Gaps = 14/166 (8%) Query: 18 DNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D RSG VALVG N GKS+L+NR + +IVT TTR ++ + + I LD Sbjct: 216 DALRSGLRVALVGRPNVGKSSLLNRLSRRERAIVTELPGTTRDLLESEIVLEGVPITLLD 275 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 T GI + D+ +L I S + AD+V LV+D H LL I + R IL+ Sbjct: 276 TAGIRSTDDAVEQLGIARSEEALATADVVLLVLDGHAGWTAEDAALLARIPEHIPR-ILV 334 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 NK D P L Q +SA +G G +D++ L Sbjct: 335 ANKADL--PAGALPQP----------VDVQLSALEGTGEEDLVQAL 368 >gi|255014529|ref|ZP_05286655.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_7] Length = 461 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNALLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETS 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I S+ + A IV L+ D R+LK + +EIA R + +IL +NK D Sbjct: 284 DAIEALGIERSFKALDQAQIVILMYDLTRDLK-DFEAFYQEIAPRLTNKSVILAMNKCDV 342 Query: 143 VKPERL 148 + L Sbjct: 343 LPTSSL 348 >gi|301311540|ref|ZP_07217467.1| tRNA modification GTPase TrmE [Bacteroides sp. 20_3] gi|300830626|gb|EFK61269.1| tRNA modification GTPase TrmE [Bacteroides sp. 20_3] Length = 461 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNALLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETS 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I S+ + A IV L+ D R+LK + +EIA R + +IL +NK D Sbjct: 284 DTIEALGIERSFKALDQAQIVILMYDLTRDLK-DFEAFYQEIAPRLTNKSVILAMNKCDV 342 Query: 143 VKPERL 148 + L Sbjct: 343 LPTSSL 348 >gi|218294927|ref|ZP_03495781.1| small GTP-binding protein [Thermus aquaticus Y51MC23] gi|218244835|gb|EED11359.1| small GTP-binding protein [Thermus aquaticus Y51MC23] Length = 432 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 11/144 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKS+L+N +G + IV+ + TTR + V ++ V LDT GI Sbjct: 176 LAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDTIDVEVYRNGNRFVLLDTAGIRKRP 235 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNK 139 +S +L IR S I+ AD+V LVVD RELK+ H + ++ ++L++ K Sbjct: 236 ESIVEELAIRRSLRAIEEADVVLLVVDPFQVGDRELKLANHAM-----EKGKPVLLVITK 290 Query: 140 IDCVKPERLLE-QAEIANKLVFIE 162 D VK E + E+ KL +E Sbjct: 291 WDLVKKEEAPRVRRELREKLAHLE 314 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L NR +G + ++V + TR + G+V ++ + + +DT G+++ Sbjct: 4 VVIVGRPNVGKSSLFNRLLGKRSAVVADEPGVTRDLKEGVVETEQGRFLLVDTGGLWSG- 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + K + ++ A++V VD +L +++ + + K+ +IL+ K+D Sbjct: 63 DRWEKKIQEKVDRALEEAELVLFAVDGRSDLTPADYEVAEYLRKKGKPVILVATKVDS 120 >gi|288801362|ref|ZP_06406816.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 299 str. F0039] gi|288331745|gb|EFC70229.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 299 str. F0039] Length = 437 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 5/166 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G V + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKVDWNGREFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N++D + + R + A++V VVD L D+ + + K +IL++NK+ Sbjct: 62 VNSEDIFEDAIRRQVLIATEEANLVLFVVDVQTGLTDWDEDVAQILRKSKVPIILVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D K E+ + AE + + + + F +S++ G G D+L+ + + L Sbjct: 122 D--KNEQQYDAAEFYS--LGLGEPFCISSSTGSGTGDLLDEVINNL 163 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFMGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S I+++D+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRAIENSDVCILMIDATRGIETQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 V--KPERLLEQAEIA 155 V K ++++ E A Sbjct: 299 VPDKDQKVITTFETA 313 >gi|90194076|gb|ABD92599.1| ThdF [Nicoletella semolina] Length = 441 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 9/147 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH----DLLKEIAKRSSRLIL 135 + A D K+ I+ +WS I+ AD + L++DS++ VN D L+++ L + Sbjct: 263 LREASDEVEKIGIQRAWSEIEQADHILLMIDSNQSQAVNFKTEYADFLQKLPPNLP-LTV 321 Query: 136 ILNKIDCVKPERLLE---QAEIANKLV 159 I NK+D +E Q + AN V Sbjct: 322 IRNKVDLSGENEGIEALSQTDRANTTV 348 >gi|332298977|ref|YP_004440899.1| GTP-binding protein engA [Treponema brennaborense DSM 12168] gi|332182080|gb|AEE17768.1| GTP-binding protein engA [Treponema brennaborense DSM 12168] Length = 497 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKSTL N+ + SIV TTR +V G + +++ + LDT GI Sbjct: 230 VAIMGKPNTGKSTLSNKLTHTQASIVCDYAGTTRDVVEGSFTYQDTAFLVLDTAGIRRKA 289 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + + T+ D+V L++D+ L + +R +I +LNK D Sbjct: 290 RVSENIEYYSVNRAIKTLDDTDVVFLMIDAQEGLAEQDKKIAALAYERGRGVIFVLNKWD 349 Query: 142 CVKPER-LLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLN 180 + +R L++AE K++F ++ VSA +G G ++LN Sbjct: 350 TQEQDRKTLKRAEENLKIMFGHMSYAPVVAVSALEGKGFKNLLN 393 >gi|167581712|ref|ZP_02374586.1| GTP-binding protein HflX [Burkholderia thailandensis TXDOH] gi|167619828|ref|ZP_02388459.1| GTP-binding protein HflX [Burkholderia thailandensis Bt4] gi|257138971|ref|ZP_05587233.1| GTP-binding protein HflX [Burkholderia thailandensis E264] Length = 387 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 22/182 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 177 QHHTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 236 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++D Sbjct: 237 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVND 294 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L+EI S R IL+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 295 VLREIGADSIRQILVFNKIDAV-PELAARGGAVERDEYGN----ISRVFL-SARTGQGLD 348 Query: 177 DV 178 + Sbjct: 349 SL 350 >gi|21674598|ref|NP_662663.1| GTP-binding protein EngA [Chlorobium tepidum TLS] gi|26006711|sp|Q8KBK3|DER_CHLTE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21647797|gb|AAM73005.1| GTP-binding protein [Chlorobium tepidum TLS] Length = 437 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 +ALVG N GKSTL NR + K +IV T V R I G K Q + +DT G Sbjct: 5 IALVGRPNVGKSTLFNRILRQKSAIVDPTPGVTRDRHISPGEWQGK--QFLLMDTGGYAP 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKI 140 D+ K M+ + I+ AD V +VD+ L D+ K + K + ++ + NK+ Sbjct: 63 ENDTLSKAMLEQTMRAIEDADAVIFIVDARSGLTYLDLDIAKILQKTFKDKKIFFVANKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D P+ LE + K F E +++SA G G D+L + ++LP Sbjct: 123 D--NPQVALEAQSLV-KSGFTE-PYLISARDGAGVADMLEDVLNSLP 165 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A++G N GKS+LVN +G + IV+ TTR + ++ + V +DT G+ Sbjct: 180 LAVLGRPNVGKSSLVNALLGTERHIVSDVPGTTRDAIDSVLKRNGEEYVLIDTAGLRKRT 239 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +A ++ + + I+ D+ +++D+ L+ ++ +R +++++NK Sbjct: 240 KIDAGIEFYSSL--RTARAIERCDVALVLLDARLGLESQDMKIIHMAIERKKGVLILVNK 297 Query: 140 IDCVKPE 146 D V+ + Sbjct: 298 WDLVEKD 304 >gi|83720345|ref|YP_442761.1| GTP-binding protein HflX [Burkholderia thailandensis E264] gi|83654170|gb|ABC38233.1| GTP-binding protein HflX [Burkholderia thailandensis E264] Length = 392 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 22/182 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHHTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++D Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVND 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L+EI S R IL+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLREIGADSIRQILVFNKIDAV-PELAARGGAVERDEYGN----ISRVFL-SARTGQGLD 353 Query: 177 DV 178 + Sbjct: 354 SL 355 >gi|260588823|ref|ZP_05854736.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583] gi|331083514|ref|ZP_08332626.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA] gi|260540602|gb|EEX21171.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583] gi|330404207|gb|EGG83755.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA] Length = 457 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 9/145 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 GEI+ E + + D R G + +VG NAGKS+L+N VG + +IVT T Sbjct: 195 GEISLLKEKLNGLLDTVREGKLMKEGIKTVIVGKPNAGKSSLLNLLVGEERAIVTDIAGT 254 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR I+ + + +DT GI + D K+ ++ + K AD++ VVDS L Sbjct: 255 TRDILEETIVLHGISLRMIDTAGIRDTDDVVEKIGVKKAVENAKDADLILYVVDSSVPLD 314 Query: 117 VNIHDLLKEIAKRSSRLILILNKID 141 N ++++ + + + I+ILNK+D Sbjct: 315 ENDKEIIELL--KDKKAIVILNKMD 337 >gi|167738272|ref|ZP_02411046.1| GTP-binding protein HflX [Burkholderia pseudomallei 14] Length = 387 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 22/182 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 177 QHHTQRRQRARSGTLSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 236 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++D Sbjct: 237 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVND 294 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L+EI S R IL+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 295 VLREIGADSIRQILVFNKIDAV-PELAARGGAVERDEYGN----ISRVFL-SARTGQGLD 348 Query: 177 DV 178 + Sbjct: 349 SL 350 >gi|150008732|ref|YP_001303475.1| tRNA modification GTPase TrmE [Parabacteroides distasonis ATCC 8503] gi|205415787|sp|A6LDT9|MNME_PARD8 RecName: Full=tRNA modification GTPase mnmE gi|149937156|gb|ABR43853.1| putative GTPase, ThdF family [Parabacteroides distasonis ATCC 8503] Length = 461 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNALLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETS 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I S+ + A IV L+ D R+LK + +EIA R + +IL +NK D Sbjct: 284 DAIEALGIERSFKALDQAQIVILMYDLTRDLK-DFEAFYQEIAPRLTNKSVILAMNKCDV 342 Query: 143 VKPERL 148 + L Sbjct: 343 LPTSSL 348 >gi|53723536|ref|YP_102999.1| GTP-binding protein HflX [Burkholderia mallei ATCC 23344] gi|67639878|ref|ZP_00438707.1| GTP-binding proten HflX [Burkholderia mallei GB8 horse 4] gi|254199944|ref|ZP_04906310.1| GTP-binding protein HflX [Burkholderia mallei FMH] gi|254206277|ref|ZP_04912629.1| GTP-binding protein HflX [Burkholderia mallei JHU] gi|52426959|gb|AAU47552.1| GTP-binding protein HflX [Burkholderia mallei ATCC 23344] gi|147749540|gb|EDK56614.1| GTP-binding protein HflX [Burkholderia mallei FMH] gi|147753720|gb|EDK60785.1| GTP-binding protein HflX [Burkholderia mallei JHU] gi|238520488|gb|EEP83947.1| GTP-binding proten HflX [Burkholderia mallei GB8 horse 4] Length = 387 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 22/182 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 177 QHHTQRRQRARSGTLSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 236 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++D Sbjct: 237 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVND 294 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L+EI S R IL+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 295 VLREIGADSIRQILVFNKIDAV-PELAARGGAVERDEYGN----ISRVFL-SARTGQGLD 348 Query: 177 DV 178 + Sbjct: 349 SL 350 >gi|300781237|ref|ZP_07091091.1| ribosome-associated GTPase EngA [Corynebacterium genitalium ATCC 33030] gi|300532944|gb|EFK54005.1| ribosome-associated GTPase EngA [Corynebacterium genitalium ATCC 33030] Length = 506 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 8/180 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR V + + DT G Sbjct: 72 TVAIVGRPNVGKSTLVNRFLGRREAVVEDHPGVTRDRVSYLSDWNGQRFWVQDTGGWDPD 131 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + S + + ADI+ +VVDSH + + + + + +IL+ NK + Sbjct: 132 AKGIHASIAHQSEAAMADADIIVMVVDSHVGVTESDAVMANNLQRSEVPVILVANKFESE 191 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 + A++A + + VSA G G DVL+ + + P P SA+ +++ P Sbjct: 192 S-----QWADVAEFYSLGLGDPWPVSALHGRGGADVLDEIVKSFPEEP--KSANSVTEGP 244 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ A ++V + TT V ++ + F+DT G + Sbjct: 247 VALVGKPNVGKSSLLNKLSRADRAVVDNVAGTTVDPVDELIQLDQKLWRFIDTAGLRKKV 306 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R TI A++ +++D+ +E+ ++ + +++ NK Sbjct: 307 KNAEGHEYYASLRTR-GTIDAAEVCVVLIDASQEITEQDQRVISMVLDAGKAMVIAFNKW 365 Query: 141 DCVKPER 147 D + +R Sbjct: 366 DLMDEDR 372 >gi|262274783|ref|ZP_06052594.1| GTP-binding protein EngA [Grimontia hollisae CIP 101886] gi|262221346|gb|EEY72660.1| GTP-binding protein EngA [Grimontia hollisae CIP 101886] Length = 501 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 4/152 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGKALLGEHEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L V + + + R + L++NK+D + Sbjct: 64 EEGVETKMAEQSLAAIEEADVVLFMVDGRAGLTVADEAIAQHLRSRQKKTFLVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 P+ AE + +E+ + ++A G G Sbjct: 124 DPD--AASAEFWQ--LGMEEMYQIAAAHGRGV 151 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 19/189 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGC---------VALVGATNAGKSTLVNRFVGAKVSIVTHKV 54 GE + KD ++++ S +++G N GKSTL NR +G + +V Sbjct: 183 GEQDEDKDEKDLTEEDAESALERLRNLPIKFSIIGRPNVGKSTLTNRILGEERVVVYDMP 242 Query: 55 QTTRSIVRGIVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDS 111 TTR + + + V +DT G+ K D K + + I+ A++V LV+D+ Sbjct: 243 GTTRDSIYIPMERDGREYVIIDTAGVRRRKRVNDKVEKFSVVQTLKAIEDANVVLLVIDA 302 Query: 112 HRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIE--KTFM 166 + LL +++ +NK D + ER+ ++E+ +L F++ + Sbjct: 303 RENISDQDLSLLGFALNAGRSIVIAVNKWDGLDSDVKERV--KSELDRRLGFVDFARIHF 360 Query: 167 VSATKGHGC 175 +SA G G Sbjct: 361 ISALHGTGV 369 >gi|53719153|ref|YP_108139.1| putative GTP-binding protein [Burkholderia pseudomallei K96243] gi|76812111|ref|YP_333744.1| GTP-binding protein HflX [Burkholderia pseudomallei 1710b] gi|52209567|emb|CAH35520.1| putative GTP-binding protein [Burkholderia pseudomallei K96243] gi|76581564|gb|ABA51039.1| GTP-binding protein HflX [Burkholderia pseudomallei 1710b] Length = 392 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 22/182 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHHTQRRQRARSGTLSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++D Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVND 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L+EI S R IL+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLREIGADSIRQILVFNKIDAV-PELAARGGAVERDEYGN----ISRVFL-SARTGQGLD 353 Query: 177 DV 178 + Sbjct: 354 SL 355 >gi|19703358|ref|NP_602920.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|25009491|sp|Q8RHA2|MNME_FUSNN RecName: Full=tRNA modification GTPase mnmE gi|19713420|gb|AAL94219.1| Thiophene and furan oxidation protein THDF [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 455 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 15/158 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D+ RE+ I+D++ + ++I ILNKID Sbjct: 283 IVENIGVEKSKELINSADLILYVIDTSREIDEEDFRIYDII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K L +K IEK +SA G D++ N Sbjct: 338 KKEINL-------SKFPKIEKWIEISALSKLGIDNLEN 368 >gi|121599988|ref|YP_993147.1| GTP-binding protein HflX [Burkholderia mallei SAVP1] gi|124386447|ref|YP_001026077.1| GTP-binding protein HflX [Burkholderia mallei NCTC 10229] gi|126448989|ref|YP_001080654.1| GTP-binding protein HflX [Burkholderia mallei NCTC 10247] gi|167002236|ref|ZP_02268026.1| GTP-binding protein HflX [Burkholderia mallei PRL-20] gi|167719275|ref|ZP_02402511.1| GTP-binding protein HflX [Burkholderia pseudomallei DM98] gi|167815461|ref|ZP_02447141.1| GTP-binding protein HflX [Burkholderia pseudomallei 91] gi|167845412|ref|ZP_02470920.1| GTP-binding protein HflX [Burkholderia pseudomallei B7210] gi|167902404|ref|ZP_02489609.1| GTP-binding protein HflX [Burkholderia pseudomallei NCTC 13177] gi|167910646|ref|ZP_02497737.1| GTP-binding protein HflX [Burkholderia pseudomallei 112] gi|254177706|ref|ZP_04884361.1| GTP-binding protein HflX [Burkholderia mallei ATCC 10399] gi|254189052|ref|ZP_04895563.1| GTP-binding proten HflX [Burkholderia pseudomallei Pasteur 52237] gi|254197755|ref|ZP_04904177.1| GTP-binding protein HflX [Burkholderia pseudomallei S13] gi|254259963|ref|ZP_04951017.1| GTP-binding protein HflX [Burkholderia pseudomallei 1710a] gi|254297434|ref|ZP_04964887.1| GTP-binding protein HflX [Burkholderia pseudomallei 406e] gi|254358308|ref|ZP_04974581.1| GTP-binding protein HflX [Burkholderia mallei 2002721280] gi|121228798|gb|ABM51316.1| GTP-binding protein HflX [Burkholderia mallei SAVP1] gi|124294467|gb|ABN03736.1| GTP-binding protein HflX [Burkholderia mallei NCTC 10229] gi|126241859|gb|ABO04952.1| GTP-binding protein HflX [Burkholderia mallei NCTC 10247] gi|148027435|gb|EDK85456.1| GTP-binding protein HflX [Burkholderia mallei 2002721280] gi|157806974|gb|EDO84144.1| GTP-binding protein HflX [Burkholderia pseudomallei 406e] gi|157936731|gb|EDO92401.1| GTP-binding proten HflX [Burkholderia pseudomallei Pasteur 52237] gi|160698745|gb|EDP88715.1| GTP-binding protein HflX [Burkholderia mallei ATCC 10399] gi|169654496|gb|EDS87189.1| GTP-binding protein HflX [Burkholderia pseudomallei S13] gi|243062053|gb|EES44239.1| GTP-binding protein HflX [Burkholderia mallei PRL-20] gi|254218652|gb|EET08036.1| GTP-binding protein HflX [Burkholderia pseudomallei 1710a] Length = 387 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 22/182 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 177 QHHTQRRQRARSGTLSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 236 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++D Sbjct: 237 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVND 294 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L+EI S R IL+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 295 VLREIGADSIRQILVFNKIDAV-PELAARGGAVERDEYGN----ISRVFL-SARTGQGLD 348 Query: 177 DV 178 + Sbjct: 349 SL 350 >gi|282889533|ref|ZP_06298075.1| hypothetical protein pah_c001o004 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500546|gb|EFB42823.1| hypothetical protein pah_c001o004 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 476 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G N GKS+L+N +G +IV+ TTR I+ + LDT GI ++ + Sbjct: 249 LIGCPNVGKSSLMNALLGKDRAIVSAIAGTTRDILEDHLKLNGLNFRLLDTAGIRDSDEI 308 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 IR S I+ AD++ V+DS R L+ + H L+++I + I + NKID KPE Sbjct: 309 VEAEGIRRSRQAIQEADLILFVLDSSRGLQADDHLLMQQIPHEKT--IGVWNKIDIQKPE 366 >gi|186476172|ref|YP_001857642.1| GTP-binding proten HflX [Burkholderia phymatum STM815] gi|184192631|gb|ACC70596.1| GTP-binding proten HflX [Burkholderia phymatum STM815] Length = 414 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 20/169 (11%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTP 78 +R+ V+LVG TNAGKSTL N A+ T + R + + E+ QIV DT Sbjct: 193 NRTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGEEVGQIVVSDTV 252 Query: 79 GIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSR 132 G ++ H+L+ R + HAD++ VVD+ ++++ ++D+L+EI + R Sbjct: 253 GFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNDVLREIGADAIR 310 Query: 133 LILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 311 QVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|126439543|ref|YP_001059218.1| GTP-binding proten HflX [Burkholderia pseudomallei 668] gi|126219036|gb|ABN82542.1| GTP-binding protein HflX [Burkholderia pseudomallei 668] Length = 387 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 22/182 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 177 QHHTQRRQRARSGTLSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 236 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++D Sbjct: 237 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVND 294 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L+EI S R IL+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 295 VLREIGADSIRQILVFNKIDAV-PELAARGGAVERDEYGN----ISRVFL-SARTGQGLD 348 Query: 177 DV 178 + Sbjct: 349 SL 350 >gi|229592437|ref|YP_002874556.1| GTP-binding protein EngA [Pseudomonas fluorescens SBW25] gi|229364303|emb|CAY52040.1| GTP-binding protein [Pseudomonas fluorescens SBW25] Length = 493 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + +IV TR G + + +DT GI Sbjct: 8 VIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGISGD 67 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R L+ NKID + Sbjct: 68 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYLVANKIDNI 127 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P EQA + + V+ G G +L ST P Sbjct: 128 DP----EQARAEFSPMGLGDAIPVAGAHGRGITQMLEIALSTFP 167 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 10/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + + + +DT G+ Sbjct: 201 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNDEKYTLIDTAGVRKRG 260 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ +NK Sbjct: 261 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIAINK 318 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 D + P ER + E+ +L F+E +SA G G ++ Sbjct: 319 WDGMTPSERDFVKIELQRRLFFVEFADIHFISALHGTGVGNL 360 >gi|291557289|emb|CBL34406.1| ribosome-associated GTPase EngA [Eubacterium siraeum V10Sc8a] Length = 439 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 +G VA+VG N GKSTL NR VG ++SIV TR + + + +DT GI Sbjct: 2 NGIVAVVGRPNVGKSTLFNRIVGKRMSIVDDTPGVTRDRIYAKAEWLGKEFMLVDTGGIE 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++KD M + I AD++ V D + N D+ + K ++L +NK Sbjct: 62 PDSKDVILSQMRMQAQLAIDKADVIIFVTDVTSGVTANDADVAAMLQKSGKPVVLCVNKC 121 Query: 141 DCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + P E + + VS+ GHG D+L+ + +P Sbjct: 122 DGIGEVPPEFYEFYNLG-----LGDPIAVSSVHGHGTGDLLDAVFENMP 165 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N +++ +D + VA++G NAGKS+LVN+ G + IV++ TTR V ++ Sbjct: 168 NPQREYSEDAIK---VAVIGKPNAGKSSLVNKIAGEQRMIVSNIAGTTRDAVDTVIERDG 224 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + V +DT GI + K + ++ I AD+ +++D+ + Sbjct: 225 QEYVLIDTAGIRRKSKVNEQIEKYSVLRAYMAIDRADVCVIMIDATEGFTEQDSKVAGYA 284 Query: 127 AKRSSRLILILNKIDCVKPE 146 ++ ++ +NK D V+ + Sbjct: 285 HEQGKASVIAINKWDAVEKD 304 >gi|330752472|emb|CBL87421.1| GTP-binding protein engA [uncultured Flavobacteria bacterium] Length = 435 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 12/174 (6%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + VA+VG N GKSTL NR + +I TTR G V Q +DT G Sbjct: 2 NNLVAIVGRPNVGKSTLFNRLTETREAITDDTSGTTRDRKYGTVVWTNHQFNVIDTGGWI 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILI 136 D + IR +++ AD++ +V E++V I DL ++IA +R+ + ++L+ Sbjct: 62 TKSDDSFEAAIRGQVEISLEEADLILFMV----EIEVGITDLDQDIANLLRRTGKPIMLV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK+D + AE +L ++ + +SA G+G ++L+ + LP P Sbjct: 118 CNKVDTSAHDV---GAEEFYRLGLADEIYRISANNGYGTGELLDAVVDALPPMP 168 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKST +N +G + +IVT TTR V +DT G+ K Sbjct: 178 LAVVGKPNVGKSTFINTILGEERNIVTDIAGTTRDSVHTHYQMFGFDFEIVDTAGLRKKK 237 Query: 85 DSYHKLMIRLSWSTIK---HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 L + TIK +D+ L++D + ++ +I + +++++NK D Sbjct: 238 QVTDHLEFYSTVRTIKAIDESDVCLLMLDGSDPMGRQDLNIFWQIVESYRGVVVVVNKWD 297 Query: 142 CVKPE 146 V+ E Sbjct: 298 LVEKE 302 >gi|148656458|ref|YP_001276663.1| small GTP-binding protein [Roseiflexus sp. RS-1] gi|148568568|gb|ABQ90713.1| small GTP-binding protein [Roseiflexus sp. RS-1] Length = 454 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 7/189 (3%) Query: 5 EITFFNEHKDFVQDNSR-SG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I + H++ ++ R SG +A+VG TNAGKSTL+N GA V T Sbjct: 204 QIEEVHRHREVYRERRRQSGIPVIAIVGYTNAGKSTLLNALSGANVRAEDRLFATLDPTT 263 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKV 117 R + Q + DT G + R + I+ AD++ V+D + + Sbjct: 264 RQVTLPGGQQALLTDTVGFIQKLPTQLVAAFRATLEEIREADVLLHVLDITHPNAAQQTQ 323 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 + D L+++ +I +LNK+D + +E +A L + VSA KG G D Sbjct: 324 TVLDTLRDLHVEDRPIITVLNKVDLMAGMNEVETERVAEALGMPDDYVAVSARKGWGLDT 383 Query: 178 VLNYLCSTL 186 +L+ + TL Sbjct: 384 LLSRIEQTL 392 >gi|126451860|ref|YP_001066485.1| GTP-binding proten HflX [Burkholderia pseudomallei 1106a] gi|134278019|ref|ZP_01764734.1| GTP-binding protein HflX [Burkholderia pseudomallei 305] gi|167823873|ref|ZP_02455344.1| GTP-binding proten HflX [Burkholderia pseudomallei 9] gi|167893954|ref|ZP_02481356.1| GTP-binding proten HflX [Burkholderia pseudomallei 7894] gi|167918675|ref|ZP_02505766.1| GTP-binding proten HflX [Burkholderia pseudomallei BCC215] gi|217421633|ref|ZP_03453137.1| GTP-binding protein HflX [Burkholderia pseudomallei 576] gi|226197101|ref|ZP_03792678.1| GTP-binding protein HflX [Burkholderia pseudomallei Pakistan 9] gi|237812542|ref|YP_002896993.1| GTP-binding protein HflX [Burkholderia pseudomallei MSHR346] gi|242318079|ref|ZP_04817095.1| GTP-binding protein HflX [Burkholderia pseudomallei 1106b] gi|254179558|ref|ZP_04886157.1| GTP-binding protein HflX [Burkholderia pseudomallei 1655] gi|126225502|gb|ABN89042.1| GTP-binding protein HflX [Burkholderia pseudomallei 1106a] gi|134251669|gb|EBA51748.1| GTP-binding protein HflX [Burkholderia pseudomallei 305] gi|184210098|gb|EDU07141.1| GTP-binding protein HflX [Burkholderia pseudomallei 1655] gi|217395375|gb|EEC35393.1| GTP-binding protein HflX [Burkholderia pseudomallei 576] gi|225930480|gb|EEH26490.1| GTP-binding protein HflX [Burkholderia pseudomallei Pakistan 9] gi|237504760|gb|ACQ97078.1| GTP-binding protein HflX [Burkholderia pseudomallei MSHR346] gi|242141318|gb|EES27720.1| GTP-binding protein HflX [Burkholderia pseudomallei 1106b] Length = 387 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 22/182 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 177 QHHTQRRQRARSGTLSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 236 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++D Sbjct: 237 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIDQVND 294 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L+EI S R IL+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 295 VLREIGADSIRQILVFNKIDAV-PELAARGGAVERDEYGN----ISRVFL-SARTGQGLD 348 Query: 177 DV 178 + Sbjct: 349 SL 350 >gi|205422232|sp|Q12HM9|MNME_SHEDO RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQD+++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ K+ I +W+ I AD V +VD V+ HD+ + Sbjct: 260 LDGMPLHIIDTAGLRDTLDTVEKIGIERAWAEIATADRVLFMVDGTTTDAVDPHDIWPDF 319 Query: 127 AKR-SSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R +RL ++ NK D E E + + F + +SA G G +++ +L Sbjct: 320 IDRLPTRLGVTVVRNKADLTG-----ESLEKSQEQGF--DVYRISAKTGLGVEELKQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|119513020|ref|ZP_01632078.1| Small GTP-binding protein domain [Nodularia spumigena CCY9414] gi|119462337|gb|EAW43316.1| Small GTP-binding protein domain [Nodularia spumigena CCY9414] Length = 454 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N FVG + SIV+ TTR + ++S + +DT GI K Sbjct: 179 VAIIGRPNVGKSSLLNAFVGEERSIVSPISGTTRDAIDTVISRNDQVYRLIDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I ++ I+ AD+V +V+D+ + L I I+++NK D Sbjct: 239 QIDYGTEFFSINRAFKAIRRADVVLMVIDALDGVTDQDQKLAGRIIDEGRACIIVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 ++ + + I ++L F E +T VSA+ G D +L+ Sbjct: 299 AIEKDSYTIYDYEKTIESRLHFTEWAETIFVSASTGQRVDKILD 342 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 4/175 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKSTLVNR G + +IV + TR ++ + +DT G +FN Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPSYWRDRDFLVVDTGGLVFND 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + + + + A LVVD L + ++ + ++ ++L +NK C Sbjct: 66 DTEFLPLIRQQALTALSQASAAILVVDGQTGLTGSDQEIATWLRQQPVPVLLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 P++ QA L E + +SA G G ++L+ L S +P+ V ++I Sbjct: 124 SPDQGAVQASEFWGLGLGEP-YPISAIHGSGTGELLDELISHIPIVTEVEEDNEI 177 >gi|188587519|ref|YP_001919064.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus JW/NM-WN-LF] gi|205415781|sp|B2A470|MNME_NATTJ RecName: Full=tRNA modification GTPase mnmE gi|179352206|gb|ACB86476.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus JW/NM-WN-LF] Length = 458 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 12/189 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N +G + +IVT TTR ++ +++ K + +DT G Sbjct: 218 REGIKTVIVGRPNVGKSSLLNLLLGEERAIVTEIPGTTRDVLEEVINLKGIPLRIIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I ++D ++ ++ + +++ ADI+ +V+DS +EL +L ++S +L+LNK Sbjct: 278 IRESEDKVEQIGVKRTRDSMEQADIILVVIDSSQELSQEDKQILTMAQDKTS--LLVLNK 335 Query: 140 IDCVKPERLLEQAEIA--NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D L E+ +I +KLV +SA K G D + ++ S L V ++ Sbjct: 336 TD------LHEKLDIDEIDKLVSQIPKVRISALKEEGLDKLEEHI-SELVFGGQVMQTEE 388 Query: 198 ISDLPMFHF 206 + HF Sbjct: 389 LVITKARHF 397 >gi|295425821|ref|ZP_06818502.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM 11664] gi|295064514|gb|EFG55441.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM 11664] Length = 461 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + +S + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYISVNSVPLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S +K AD+V L++D +EL LLKE + + I+ILNK Sbjct: 282 IHHTDDKVEKIGVERSQKALKQADLVLLLLDGSQELTDEDKTLLKETENK--KRIIILNK 339 Query: 140 ID 141 +D Sbjct: 340 MD 341 >gi|207092710|ref|ZP_03240497.1| GTP-binding protein Era [Helicobacter pylori HPKX_438_AG0C1] Length = 100 Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 58/90 (64%), Gaps = 5/90 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKNKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 LDTPG+ + + ++ M+ + + A++ Sbjct: 63 LDTPGLHHQEKLLNQCMLSQALKAMGDAEL 92 >gi|167749166|ref|ZP_02421293.1| hypothetical protein EUBSIR_00117 [Eubacterium siraeum DSM 15702] gi|167657844|gb|EDS01974.1| hypothetical protein EUBSIR_00117 [Eubacterium siraeum DSM 15702] gi|291530430|emb|CBK96015.1| ribosome-associated GTPase EngA [Eubacterium siraeum 70/3] Length = 439 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 +G VA+VG N GKSTL NR VG ++SIV TR + + + +DT GI Sbjct: 2 NGIVAVVGRPNVGKSTLFNRIVGKRMSIVDDTPGVTRDRIYAKAEWLGKEFMLVDTGGIE 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++KD M + I AD++ V D + N D+ + K ++L +NK Sbjct: 62 PDSKDVILSQMRMQAQLAIDKADVIIFVTDVTSGVTANDADVAAMLQKSGKPVVLCVNKC 121 Query: 141 DCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + P E + + VS+ GHG D+L+ + +P Sbjct: 122 DGIGEVPPEFYEFYNLG-----LGDPIAVSSVHGHGTGDLLDAVFENMP 165 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N +++ +D + VA++G NAGKS+LVN+ G + IV++ TTR V ++ Sbjct: 168 NPQREYSEDAIK---VAVIGKPNAGKSSLVNKIAGEQRMIVSNIAGTTRDAVDTVIERDG 224 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + V +DT GI + K + ++ + AD+ +++D+ + Sbjct: 225 QEYVLIDTAGIRRKSKVNEQIEKYSVLRAYMAVDRADVCVIMIDATEGFTEQDSKVAGYA 284 Query: 127 AKRSSRLILILNKIDCVKPE 146 ++ ++ +NK D V+ + Sbjct: 285 HEQGKASVIAINKWDAVEKD 304 >gi|147678455|ref|YP_001212670.1| GTPase [Pelotomaculum thermopropionicum SI] gi|146274552|dbj|BAF60301.1| GTPase [Pelotomaculum thermopropionicum SI] Length = 434 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 98/225 (43%), Gaps = 26/225 (11%) Query: 5 EITFFNEHKDFVQDNSRS---GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI E +D ++ N + VA+VG TNAGKSTL+ + GA V + T + Sbjct: 193 EIKEVRERRDLLRRNRKEVPFPLVAIVGYTNAGKSTLLKKLTGADVLVEDKLFATLDPVT 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI- 119 R +V I+ DT G + R + + AD++ VVD SH ++ I Sbjct: 253 RRVVLPDNETILLTDTVGFIQNLPHHLVAAFRATLEEVMEADLLLHVVDASHPYMEEQIG 312 Query: 120 --HDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKT----FMVSATKGH 173 +++L + L+++ NK D LL A+ F EK+ VSA KG Sbjct: 313 AVNEVLASLGAAGKPLVMVYNKAD------LLPDAKF-----FREKSSPPAVAVSALKGW 361 Query: 174 GCDDVLNYLCSTLP----LAPWVYSADQISDLPMFHFTAEITREK 214 G +D+L + LP A + + LP+ H + RE+ Sbjct: 362 GMEDLLAAIARALPGRRIKASFFIPYRKSGLLPVLHEKGRVLREE 406 >gi|296328796|ref|ZP_06871310.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154131|gb|EFG94935.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 455 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 15/158 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D+ RE+ I+D++ + ++I ILNKID Sbjct: 283 IVENIGVEKSKELINSADLILYVIDTSREIDEEDFRIYDII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K L +K IEK +SA G D++ N Sbjct: 338 KKEINL-------SKFPKIEKWIEISALSKLGIDNLEN 368 >gi|296137607|ref|YP_003644849.1| tRNA modification GTPase TrmE [Thiomonas intermedia K12] gi|295797729|gb|ADG32519.1| tRNA modification GTPase TrmE [Thiomonas intermedia K12] Length = 472 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 10/182 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ ++ Sbjct: 226 VVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVSQTIQIEGVPLHIVDTAGLRDSA 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSRLILILNKID 141 D+ ++ + SW I AD+V + D R EIA+ + + L+ + NK D Sbjct: 286 DAVERIGVERSWHAIAGADVVVFLHDLTRLQAPGYAQAEAEIARGLPKGAPLLHVFNKRD 345 Query: 142 CVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV---LNYLCSTLPLAPWVYSA 195 CV+ RLL Q A V ++ +SA G G + L L P + V+ A Sbjct: 346 CVETGAQARLLPQV-WAQWGVEAGESVWISAATGDGLQGLRLKLLQLAGAQPTSEGVFIA 404 Query: 196 DQ 197 Q Sbjct: 405 RQ 406 >gi|190171222|gb|ACE63681.1| ThdF [Enterobacter ludwigii] Length = 439 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ +SA G G DD+ N+L Sbjct: 313 IARLPAKLPITVVRNKADVTG--ETLGISEVNG-----HSLIRLSARTGEGVDDLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|91795119|ref|YP_564770.1| tRNA modification GTPase TrmE [Shewanella denitrificans OS217] gi|91717121|gb|ABE57047.1| tRNA modification GTPase trmE [Shewanella denitrificans OS217] Length = 466 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQD+++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 213 DTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 272 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ K+ I +W+ I AD V +VD V+ HD+ + Sbjct: 273 LDGMPLHIIDTAGLRDTLDTVEKIGIERAWAEIATADRVLFMVDGTTTDAVDPHDIWPDF 332 Query: 127 AKR-SSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R +RL ++ NK D E E + + F + +SA G G +++ +L Sbjct: 333 IDRLPTRLGVTVVRNKADLTG-----ESLEKSQEQGF--DVYRISAKTGLGVEELKQHLK 385 Query: 184 STL 186 S + Sbjct: 386 SLM 388 >gi|255994066|ref|ZP_05427201.1| ribosome-associated GTPase EngA [Eubacterium saphenum ATCC 49989] gi|255993734|gb|EEU03823.1| ribosome-associated GTPase EngA [Eubacterium saphenum ATCC 49989] Length = 441 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 A++G+ N GKST N+ +G K+SIV + TR + G + +I+ +DT GI Sbjct: 6 TAAIIGSPNTGKSTFFNKLIGKKLSIVHDERGVTRDRIYGYTQWRNHEILLIDTGGI--E 63 Query: 84 KDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 DS ++M + I+ AD++ +VD L ++ + K +++L++NKI Sbjct: 64 TDSKDEMMTNIRQQADVAIELADVIIFLVDGKAGLTSGDREIAMLLKKTRKKILLVVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D E + F E F VSA G DVL+++ P A D Sbjct: 124 DNAGIESAV--------FDFYELGFNDVQGVSAANMLGLGDVLDFIVDNAPKAQTTLDED 175 Query: 197 QIS 199 +S Sbjct: 176 ILS 178 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 23/187 (12%) Query: 14 DFVQDNSRSG---------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 DF+ DN+ VA++G NAGKS+L+N +IV+ TTR + + Sbjct: 159 DFIVDNAPKAQTTLDEDILSVAVIGRPNAGKSSLLNYLASENRAIVSEMQGTTRDSIDEV 218 Query: 65 VSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVN 118 V+ K + +DT GI D+ K + + S I+ D+ L++D++ E Sbjct: 219 VTYKGDRYNIIDTAGIRRKSKIGDAVEKFSVIRAISAIERCDVCVLMIDANIGVSEQDQR 278 Query: 119 IHDLLKEIAKRSSRLILILNKIDCV-KPERLLE--QAEIANKLVFIE--KTFMVSATKGH 173 I L KE K +I+ +NK D + K ++ + E+A L FI +SAT+G Sbjct: 279 IAGLAKEAGK---GIIVAVNKWDSIEKATSTMKTYERELAENLKFISYAPVVFISATEGI 335 Query: 174 GCDDVLN 180 D++++ Sbjct: 336 RIDNLMS 342 >gi|224023939|ref|ZP_03642305.1| hypothetical protein BACCOPRO_00656 [Bacteroides coprophilus DSM 18228] gi|224017161|gb|EEF75173.1| hypothetical protein BACCOPRO_00656 [Bacteroides coprophilus DSM 18228] Length = 476 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TNAGKSTL+N + + +IV+ TTR ++ ++ F+DT GI Sbjct: 228 VAIVGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRFIDTAGIRETT 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I S+ + ADIV ++D+ + H L +I R L+++LNK+D Sbjct: 288 DTIESLGIERSFQKLDQADIVLWIIDATCA-EEQYHQLADKILPRCEGKHLVIVLNKVDL 346 Query: 143 VKP 145 + P Sbjct: 347 LSP 349 >gi|167836403|ref|ZP_02463286.1| GTP-binding protein HflX [Burkholderia thailandensis MSMB43] Length = 392 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 22/182 (12%) Query: 11 EHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHHTQRRQRARSGAMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++D Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVND 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L+EI S R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLREIGADSIRQVLVFNKIDAV-PELAARGGAVERDEYGN----ISRVFL-SARTGQGLD 353 Query: 177 DV 178 + Sbjct: 354 SL 355 >gi|269122893|ref|YP_003305470.1| tRNA modification GTPase TrmE [Streptobacillus moniliformis DSM 12112] gi|268314219|gb|ACZ00593.1| tRNA modification GTPase TrmE [Streptobacillus moniliformis DSM 12112] Length = 455 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 68/116 (58%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKSTL+N + + +IVT TTR ++ I++ K +V +DT GI D Sbjct: 223 IVGKPNVGKSTLLNTLLQEERAIVTSVPGTTRDVIEEIINIKGIPLVLVDTAGIRETDDI 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + ++ S I+ AD+V LV+DS +E++ ++++I + + I++LNKID Sbjct: 283 VENIGVKKSLEFIEMADLVLLVLDSSKEIEEEDIRVIEKILELEKQYIVLLNKIDL 338 >gi|237741002|ref|ZP_04571483.1| thiophene and furan oxidation protein thdf [Fusobacterium sp. 4_1_13] gi|229431046|gb|EEO41258.1| thiophene and furan oxidation protein thdf [Fusobacterium sp. 4_1_13] Length = 455 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 15/158 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D+ RE+ I+D++ + ++I ILNKID Sbjct: 283 IVENIGVEKSKELINSADLILYVIDTSREIDEEDYRIYDII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + L E + IEK +SA G D++ N Sbjct: 338 KRNTDLSEFPK-------IEKWIEISALSKTGIDNLEN 368 >gi|94971659|ref|YP_593707.1| GTP-binding protein EngA [Candidatus Koribacter versatilis Ellin345] gi|94553709|gb|ABF43633.1| Small GTP-binding protein [Candidatus Koribacter versatilis Ellin345] Length = 511 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 5/166 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTL NR VG + +IV + TR + G ++ +DT GI Sbjct: 15 GMIAIVGRPNVGKSTLFNRLVGQRRAIVGDEPGITRDRLYGYSEWAGKRLRVVDTGGIVP 74 Query: 83 AKDSYHKLMI-RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ I R + ++ AD++ +VVD+ EL DL + + + LIL +NKID Sbjct: 75 DDEALIPAEIFRQAKVALEEADVIVMVVDARTELASPDIDLARLLQRTGKPLILAVNKID 134 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E +E + + I +SA G ++L + +P Sbjct: 135 DPKLESYVEDF----RRLGIRTMVPISAEHSTGVAELLEEILERIP 176 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 7/124 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-FLDTPGIFNA 83 +A++G N GKST++NR G +IV+ TTR V +V E++ QI F+DT GI Sbjct: 242 IAIIGRPNVGKSTMLNRLTGTARAIVSPIAGTTRDAVDEVV-ERDGQIFRFIDTAGIRRK 300 Query: 84 KDS---YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + KL + ++ ++ AD+ +++D+ E I + A + R +I+++NK Sbjct: 301 GKTRLMAEKLSVVMARKHLEAADLALVLIDAT-EGVTAIDATIAGYAHEAGRSVIVVINK 359 Query: 140 IDCV 143 D V Sbjct: 360 WDLV 363 >gi|34763011|ref|ZP_00143987.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887312|gb|EAA24406.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 455 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 19/178 (10%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 ++ +N+ K ++D ++ A++G N GKS+++N + +IVTH TTR I+ ++ Sbjct: 207 VSSYNKGK-IIKDGIKT---AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVI 262 Query: 66 SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDL 122 + ++ +DT GI N D + + S I AD++ V+D+ RE+ I+D+ Sbjct: 263 NINGIPLLLIDTAGIRNTDDIVENIGVEKSKELINSADLILYVIDTSREIDEEDYRIYDI 322 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + + ++I ILNKID + L E + IEK +SA G D++ N Sbjct: 323 I-----NTDKVIGILNKIDIKRNTDLSEFPK-------IEKWIEISALSKTGIDNLEN 368 >gi|78224743|ref|YP_386490.1| tRNA modification GTPase TrmE [Geobacter metallireducens GS-15] gi|123570636|sp|Q39PQ9|MNME_GEOMG RecName: Full=tRNA modification GTPase mnmE gi|78195998|gb|ABB33765.1| tRNA modification GTPase trmE [Geobacter metallireducens GS-15] Length = 457 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 10/167 (5%) Query: 21 RSGCVALV-GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G L+ G N GKS+L+N + K +IVT TTR I+ +V+ + + LDT G Sbjct: 219 RDGVSVLIAGKPNVGKSSLLNTLLQEKRAIVTSVPGTTRDIIEEVVNVRGLPLRMLDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D + +RL+ I AD++ V+D R + +L +A+R R+I++ NK Sbjct: 279 IRETEDVVEQEGVRLTLEKIPQADLILFVLDGSRPFDDDDRMILAALAER--RVIVVTNK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D R+ + E + T +S G G DD+ + T Sbjct: 337 SDLPVTLRIPGELEGVH-------TVAISTATGAGIDDLREAVFETF 376 >gi|190171242|gb|ACE63691.1| ThdF [Enterobacter sp. OD1121_04] Length = 439 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ +SA G G DD+ N+L Sbjct: 313 IARLPAKLPITVVRNKADVTG--ETLGISEVNG-----HSLIRLSARTGEGVDDLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|149204177|ref|ZP_01881145.1| GTP-binding protein EngA [Roseovarius sp. TM1035] gi|149142619|gb|EDM30664.1| GTP-binding protein EngA [Roseovarius sp. TM1035] Length = 488 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG ++++V ++ TR + G + + +DT G+ +A Sbjct: 4 SVAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGAARLGDLRFTVIDTAGLEDA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D S M +L+ + ADI V+D+ + L + + KRS+ +IL NK + Sbjct: 64 TDESLQGRMRKLTERAVDMADICLFVIDARTGVTPTDESLAEILRKRSAHVILAANKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + I + + + +SA G G +D+ + L +PL Sbjct: 124 SA----ADAGVIEAWGLGLGEPIRMSAEHGEGLNDLYSQL---MPL 162 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 22/193 (11%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R VA+VG NAGKSTL+N+ +G + + + TR + + + DT G Sbjct: 199 ARPMQVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLRIDWDGMPVRIFDTAG 258 Query: 80 I---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLIL 135 + +D KL + +K A++V +++D+ + DL + ++A+R R ++ Sbjct: 259 MRKKAKVQDKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVV 316 Query: 136 I-LNKIDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVL 179 + +NK D K +++ E E +L+ + VSA G G D +V Sbjct: 317 VAINKWDMEPDKSDKIRELREAFERLLPQLRGAPLVTVSAKTGKGLDRLRDAVAKAHEVW 376 Query: 180 NYLCSTLPLAPWV 192 N +T L W+ Sbjct: 377 NRRVTTAQLNRWL 389 >gi|187731692|ref|YP_001881302.1| GTP-binding protein EngA [Shigella boydii CDC 3083-94] gi|238691721|sp|B2TXT6|DER_SHIB3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187428684|gb|ACD07958.1| ribosome-associated GTPase EngA [Shigella boydii CDC 3083-94] Length = 490 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NKID + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKIDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|313202911|ref|YP_004041568.1| tRNA modification GTPase trme [Paludibacter propionicigenes WB4] gi|312442227|gb|ADQ78583.1| tRNA modification GTPase trmE [Paludibacter propionicigenes WB4] Length = 462 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 9/137 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TN GKSTL+N + +IV+ TTR ++ ++ F+DT GI + K Sbjct: 223 VALVGETNVGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDSINIDGITFRFIDTAGIRDTK 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNKIDC 142 D + I ++ I+ A IV ++D +L ++ L IAKRS+ ++IL+ NKID Sbjct: 283 DKIENMGIERTYQKIEQASIVLWILDC-TQLSEHMEWLTDRIAKRSAGKKVILVFNKIDK 341 Query: 143 VKPE------RLLEQAE 153 + + +L EQ E Sbjct: 342 IADDERDVLSQLFEQFE 358 >gi|227364302|ref|ZP_03848395.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3] gi|325683501|ref|ZP_08163017.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A] gi|227070615|gb|EEI08945.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3] gi|324977851|gb|EGC14802.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A] Length = 477 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT+ TTR ++ V+ + +DT G Sbjct: 236 RDGLATAIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAG 295 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD+V L++DS +L LL+ A + + I+ILNK Sbjct: 296 IRDTNDQVEKIGVERSRKALGAADLVLLLIDSSNKLTDEDRQLLE--ATKDKQRIIILNK 353 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM 166 D + L E +A K IE + + Sbjct: 354 TDLPRKVDLAELKLLAGKSAVIETSIV 380 >gi|146328838|ref|YP_001209431.1| GTP-binding family protein [Dichelobacter nodosus VCS1703A] gi|146232308|gb|ABQ13286.1| GTP-binding family protein [Dichelobacter nodosus VCS1703A] Length = 449 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 14/178 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKESQIVFLDTPGI--- 80 +A++G NAGKSTL+NR +G + + + TTR +R V + +DT GI Sbjct: 185 LAVLGRPNAGKSTLLNRLLGEERLVASPVAGTTRDAIRIPYVDNEGDAFTLIDTAGIRRK 244 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D K I + I+ A++V LV+D+ + LL EI KR L++ +NK Sbjct: 245 ARVDDKIEKFSIVKALEAIEQANVVILVLDAQAGITDQDAHLLGEIIKRGRGLVIAVNKW 304 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D + E R QA++ KL F++ + F +SA HG + + + LP VY + Sbjct: 305 DHLDGETREKIQAQLERKLNFVDYAEIFYISAL--HGSN-----IRALLPAVKTVYRS 355 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 7/170 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 VALVG N GKSTL N ++ +IV++K TR + + + +DT G+ N Sbjct: 6 ATVALVGRPNVGKSTLFNTLTRSRQAIVSNKAGLTRDRIYARTTLAGVPCMLIDTGGMLN 65 Query: 83 AKDSYHKLMI-RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + + + ++ AD++ V+D+ L ++ + E+ + + ++L +NKID Sbjct: 66 TETAEIDFRVDEQARTAMEEADVIVFVLDARDGLTLDDEQIAAELRRVTKPIVLAVNKID 125 Query: 142 CVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 V P+ +A+ + ++ ++A + G + + + S LP AP Sbjct: 126 GVDPD-----VAVADFYRLGMQPVLTIAAEQRRGIKQLEDLIVSLLPPAP 170 >gi|157870496|ref|XP_001683798.1| hypothetical protein [Leishmania major strain Friedlin] gi|68126865|emb|CAJ04710.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 443 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 121/268 (45%), Gaps = 22/268 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G NAGK++LVN + V V+++ +T+ + + + E+Q++ LDTPGI + Sbjct: 155 VAFLGPQNAGKTSLVNSMALSNVGAVSNRYGSTKDWTKAVATVHETQLLLLDTPGIV-PR 213 Query: 85 DSYHKLMIRLSWSTIKH------ADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRL 133 D+ ++ + + T K +D+V L + +E KV ++++ A R + Sbjct: 214 DT-QRVRRKFASGTAKAYDALFVSDLVVLALPVGVGFVEKEHKVVATEVVRRAAGRELPV 272 Query: 134 ILILNKIDCVKPERLLE-----QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++ + +D V+ E + ++ + + T VS G G ++ + LC Sbjct: 273 VIAMTMMDKVQTPWHRELYFAMRTDLESLGLPTAATHEVSVKGGSGLVELKDCLCQYAKP 332 Query: 189 APWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVI 248 W + + +DL AE+ R+ L EIP+ W K+ G+ + Sbjct: 333 GAWEHYRREATDLNPPQRVAELLRQTFMELLPHEIPHCMRHRVLGWTRKESGTTEVVVEA 392 Query: 249 YVERPSQKKIMLGKNGQNIKTISLEAKK 276 + +RP+ GK ++ I L A++ Sbjct: 393 FFDRPAYMFTFYGK----LEAICLRAQQ 416 >gi|26987593|ref|NP_743018.1| GTP-binding protein EngA [Pseudomonas putida KT2440] gi|37999649|sp|Q88PJ3|DER_PSEPK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24982270|gb|AAN66482.1|AE016277_1 GTP-binding protein EngA [Pseudomonas putida KT2440] Length = 487 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G S + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD V +VD+ + + + + KR+ IL+ NKID + Sbjct: 64 EVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKAAILVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +AE + + + V+ ++G G + ++ + LP Sbjct: 124 DPD--VARAEFSP--MGMGNAIPVAGSQGRGINALMEAVLGHLP 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 10/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + +V + TTR + + F+DT G+ Sbjct: 195 IAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGEKYTFIDTAGVRKRG 254 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R I+I LNK Sbjct: 255 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRAIVIALNK 312 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 D ++P ER + E+ +L F++ +SA G G ++ Sbjct: 313 WDGMEPGERAYVKTELERRLFFVDFADIHFISALHGTGVGNL 354 >gi|256825342|ref|YP_003149302.1| small GTP-binding domain-containing protein [Kytococcus sedentarius DSM 20547] gi|256688735|gb|ACV06537.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Kytococcus sedentarius DSM 20547] Length = 527 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 7/182 (3%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F+EH + VQ VA+VG N GKSTLVNRF+G + ++V + TR V Sbjct: 81 FDEHGNQVQSLP---VVAIVGRPNVGKSTLVNRFLGRREAVVQDEPGVTRDRVTYPAEWN 137 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + +DT G K + + + ++ AD+V VVD+ D++K + + Sbjct: 138 GVPFMVMDTGGWEIDAKGIQKHVAQQAEVAVELADVVIFVVDATVGATDADEDVVKLLRR 197 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++L+ NK+D + LE A + + + + +SA G G D+L+ + + P Sbjct: 198 SRKPVLLVANKVDDLH----LEGEAAALWSMGLGQPWPLSALHGKGSGDLLDEVLAKFPA 253 Query: 189 AP 190 P Sbjct: 254 EP 255 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 14/172 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VAL+G N GKS+L+NR G++ +V + TTR V + +F+DT GI Sbjct: 269 VALLGRPNVGKSSLLNRLAGSERVVVDNVAGTTRDPVDEYIELGGRTWMFVDTAGIRRRV 328 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + S ++ A++ +++D+ E+ +++++ L++ N Sbjct: 329 HQTRGVDFYASLRTQ---SALEKAEVAVVLIDAGEEIAEQDIRVVQQVIDSGRALVIAYN 385 Query: 139 KIDCVKPER--LLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYLCSTL 186 K D ER LE+ EI LV + V SAT+G D ++ L L Sbjct: 386 KWDTTDEERRHYLER-EIERDLVQVPWAPRVNMSATRGRHVDKLVPALDQAL 436 >gi|148545139|ref|YP_001272509.1| tRNA modification GTPase TrmE [Lactobacillus reuteri DSM 20016] gi|184154471|ref|YP_001842812.1| tRNA modification GTPase TrmE [Lactobacillus reuteri JCM 1112] gi|148532173|gb|ABQ84172.1| tRNA modification GTPase trmE [Lactobacillus reuteri DSM 20016] gi|183225815|dbj|BAG26332.1| thiophene and furan oxidation protein ThdF [Lactobacillus reuteri JCM 1112] Length = 462 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT+ TTR ++ V+ + +DT G Sbjct: 221 RDGLATAIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD+V L++DS +L LL+ A + + I+ILNK Sbjct: 281 IRDTNDQVEKIGVERSRKALGAADLVLLLIDSSNKLTDEDRQLLE--ATKDKQRIIILNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM 166 D + L E +A K IE + + Sbjct: 339 TDLPRKVDLAELKLLAGKSAVIETSIV 365 >gi|306820449|ref|ZP_07454085.1| ribosome-associated GTPase EngA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551524|gb|EFM39479.1| ribosome-associated GTPase EngA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 439 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR VG K+SIV TR + V+ +DT GI + Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGEKISIVEDTPGVTRDRIFADVNWLTYTFTLIDTGGIETD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ +M + + I +D++ V+D L ++ + K +IL++NK+D Sbjct: 64 TEEMIPAMMRKQAQVAIDMSDVIMFVLDGKNGLHPQDFEVGTMLRKSKKPVILVVNKVDG 123 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K P+ + ++ + + VSA++G G D+L+ + P Sbjct: 124 SKLPDDYYDFYQLG-----FDDMYAVSASQGLGIGDLLDEVVGLFP 164 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 14/173 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKS+++N +G + +IV+ TTR + F+DT GI Sbjct: 178 VAIVGRPNAGKSSILNAIIGEERTIVSPIAGTTRDAIDEKCEIDGKSYTFIDTAGIRKKN 237 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 D+ K + S++ I+ D+V +V+D+ E I L E K +I+++N Sbjct: 238 KIFDNIEKYSVLRSYTAIERCDVVLMVIDATEMVSEQDTKIAGLAHEAGK---PVIIVIN 294 Query: 139 KIDCV-KPERLLEQ--AEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 K D + K + A++ N L +++ K VSA G ++++ + L Sbjct: 295 KWDLIDKSTNTMRDYTADVRNALAYMQYAKIEFVSAMTGKRLNNIITQIDYVL 347 >gi|148361342|ref|YP_001252549.1| thiophene/furan oxidation GTPase [Legionella pneumophila str. Corby] gi|296108683|ref|YP_003620384.1| GTP binding protein in thiophene and furan oxidation (GTPase) [Legionella pneumophila 2300/99 Alcoy] gi|205415773|sp|A5IIK3|MNME_LEGPC RecName: Full=tRNA modification GTPase mnmE gi|148283115|gb|ABQ57203.1| GTP binding protein in thiophene and furan oxidation (GTPase) [Legionella pneumophila str. Corby] gi|295650585|gb|ADG26432.1| GTP binding protein in thiophene and furan oxidation (GTPase) [Legionella pneumophila 2300/99 Alcoy] Length = 446 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 16/157 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G NAGKSTL+N G V+IVT TTR I+R + + + +DT G+ ++ Sbjct: 218 LVIAGRPNAGKSTLINNLAGRDVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSRLILILNKID 141 D K I+ +W +K AD V LVVD + + N LL E+ +I + NKID Sbjct: 278 DLVEKEGIKRAWQELKRADCVLLVVDINNPDQQN--SLLNELRLTLPNKIPIITVYNKID 335 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 K L + + E T +SA G G D++ Sbjct: 336 TTK---LTAKCD--------EHTVYLSAKTGEGLDEL 361 >gi|152995389|ref|YP_001340224.1| small GTP-binding protein [Marinomonas sp. MWYL1] gi|189037150|sp|A6VV10|DER_MARMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|150836313|gb|ABR70289.1| small GTP-binding protein [Marinomonas sp. MWYL1] Length = 445 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 6/181 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K+ + SR + +VG N GKSTLVNR +G +V TTR V + Sbjct: 168 EAKNQISIESRGIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYVRNDK 227 Query: 71 QIVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +DT GI + K++ K I + I+ A++V +V+DSH L ++ + Sbjct: 228 EYTLIDTAGIRRRKHVKEAVEKFSIVKALQAIQDANVVIVVIDSHENLVEQDLHMIGYVL 287 Query: 128 KRSSRLILILNKIDCV-KPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCS 184 +I+ +NK D + K +R ++E+ +L F+ K +SA G G D+ + + S Sbjct: 288 DAGRGVIIAINKWDGLKKDDREHIKSEVERRLGFVPYAKVHYISALHGTGVGDLYDTIES 347 Query: 185 T 185 T Sbjct: 348 T 348 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 11/179 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V TR G E + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNQLTRSRDALVADYPGLTRDRKYGDGKLGEHEFIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M R S I+ AD+V +VD L + + + + ++ L++NK D + Sbjct: 64 EQGIDEKMARQSLLAIEEADVVLFLVDGRHGLNPADEMIASHLRRSNKQVSLVVNKTDGI 123 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA-DQIS 199 E +A+ L F E ++A+ G G +++ + LP A V A +QIS Sbjct: 124 N-----EDIALADFYSLGFGE-LHPIAASHGKGVHVLIDKVM--LPFAERVEEAKNQIS 174 >gi|325280484|ref|YP_004253026.1| tRNA modification GTPase mnmE [Odoribacter splanchnicus DSM 20712] gi|324312293|gb|ADY32846.1| tRNA modification GTPase mnmE [Odoribacter splanchnicus DSM 20712] Length = 464 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 6/167 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 224 VAIVGNTNVGKSTLLNALLREDRAIVSDIAGTTRDVIEDTINLNGITFRFIDTAGIRATS 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D + I +++ I A +V L+ D +R ++ + + ++ R ++LI++LNK D Sbjct: 284 DEVENIGIERTFAKIGQASVVLLLTDLNRGVE-SFEEYYHQVKSRLTSDAKLIIVLNKTD 342 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 V E LL E E+ +SA G D ++ L T+ L Sbjct: 343 QV--EDLLTPQETIRLFTSGEEIIPISARTGANLDRLIQELTRTVNL 387 >gi|94971754|ref|YP_593802.1| tRNA modification GTPase TrmE [Candidatus Koribacter versatilis Ellin345] gi|205829050|sp|Q1IHC2|MNME_ACIBL RecName: Full=tRNA modification GTPase mnmE gi|94553804|gb|ABF43728.1| tRNA modification GTPase trmE [Candidatus Koribacter versatilis Ellin345] Length = 454 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+L NR V +IVT TTR +V VS + +DT GI + Sbjct: 223 TLAIVGRPNVGKSSLFNRLVERDRAIVTAIPGTTRDLVTETVSLGGIPVHLVDTAGIRES 282 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI-HDLLKEIAKRSSRLILILNKID 141 D + I+ S + AD+V +VVD+H E + H L+ A+RS+ IL+ NKID Sbjct: 283 HDEAESIGIQKSREAMADADLVLVVVDAHAETGHELDHQLISAAAERSA--ILVENKID 339 >gi|313497226|gb|ADR58592.1| EngA [Pseudomonas putida BIRD-1] Length = 487 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G S + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD V +VD+ + + + + KR+ IL+ NKID + Sbjct: 64 EVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKAAILVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +AE + + + V+ ++G G + ++ + LP Sbjct: 124 DPD--VARAEFSP--MGMGNAIPVAGSQGRGINALMEAVLGHLP 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 10/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + +V + TTR + + F+DT G+ Sbjct: 195 IAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGEKYTFIDTAGVRKRG 254 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R I+I LNK Sbjct: 255 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRAIVIALNK 312 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 D ++P ER + E+ +L F++ +SA G G ++ Sbjct: 313 WDGMEPGERAYVKTELERRLFFVDFADIHFISALHGTGVGNL 354 >gi|294506233|ref|YP_003570291.1| GTPases [Salinibacter ruber M8] gi|294342561|emb|CBH23339.1| putative GTPases [Salinibacter ruber M8] Length = 505 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFN 82 VA+VG N GKSTL NR G++ +IV TR V G K I +DT G + Sbjct: 75 LVAIVGRPNVGKSTLFNRLTGSRQAIVEDTPGVTRDRVYGEAEWKGHTIPLVDTGGYVPR 134 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILN 138 + D Y + + + ++ AD++ VVD + I ++ KEIA + ++++ N Sbjct: 135 SDDPYERAIREQAEIALEDADVILFVVD----VTTGITEMDKEIATVLRPTETPVMVVAN 190 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K D ER + +E + + + + VS+T G DD++ L LP Sbjct: 191 KAD--NEEREWDASEFYQ--LGLGEVYPVSSTNKRGVDDMMAALVEELP 235 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 V+LVG NAGKS+LVN +G +IVT + TTR V+ +V + ++ +DT G+ + Sbjct: 248 VSLVGKPNAGKSSLVNATLGFDRAIVTERPGTTRDTVQSVVQYEGRDLMLVDTAGMQKRS 307 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D S I+ D+ LV+D+ EL +L E+ + +++ +NK D Sbjct: 308 KADGVEFYATVRSERAIRAGDVCVLVLDATEELHKQDLSVLSEVNEHKKGMVVAVNKWDL 367 Query: 143 V 143 V Sbjct: 368 V 368 >gi|254447523|ref|ZP_05060989.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015] gi|198262866|gb|EDY87145.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015] Length = 432 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 7/153 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L+G NAGKS+L+N G +IVT TTR +++ + + +DT G+ + Sbjct: 200 SVVLLGQPNAGKSSLLNALAGDDTAIVTDVAGTTRDVLQQAIHLDGLPLNIIDTAGLRDT 259 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D +R +W+ ++ AD V L++D+ R ++ + + S+ + NKID Sbjct: 260 QDVVEAEGVRRAWAAVEQADRVLLLIDAERGFDHGDQAIVDALDRHSTNFDYLWNKID-- 317 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 RL + +I K + +SA+ G G D Sbjct: 318 ---RLGQAPKIEKKSG--QWHLSISASLGEGID 345 >gi|325681451|ref|ZP_08160977.1| ribosome biogenesis GTPase Der [Ruminococcus albus 8] gi|324106941|gb|EGC01231.1| ribosome biogenesis GTPase Der [Ruminococcus albus 8] Length = 443 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N+ +G ++SIV TR + G + + +DT GI Sbjct: 5 VVAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYGKCEWLGREFMLVDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D M R S I A+++ LV D + ++ + + K ++L +NK+D Sbjct: 65 SDDIILSQMRRQSELAITSANVIILVTDIKSGVTSTDMEVAQMLMKSGKPVVLCVNKVDN 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V E +E E N + + + F VS+ GHG D+L+ + LP Sbjct: 125 VG-EPPMELYEFYN--LGLGEPFPVSSVHGHGTGDMLDEVLKYLP 166 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D+ + VA++G N GKS+L+NR G + IV+ TTR + + + VF+D Sbjct: 172 EDDDEAVKVAVIGKPNVGKSSLINRICGEERVIVSDIAGTTRDATDTDIENEFGKFVFID 231 Query: 77 TPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDS 111 T GI ++ K + ++ + AD+ +V+D+ Sbjct: 232 TAGIRRKSKVLETVEKYSVLRAYMAVDRADVAVIVIDA 269 >gi|168334919|ref|ZP_02693039.1| tRNA modification GTPase TrmE [Epulopiscium sp. 'N.t. morphotype B'] Length = 443 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 16/159 (10%) Query: 21 RSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V +VG N GKS+L+N + +IVT+ TTR IV S + + DT G Sbjct: 214 REGAVVTIVGRPNVGKSSLLNALLEEDKAIVTNIAGTTRDIVSEHFSVEGVPFILQDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D+ ++ + S I+ +D+V +++D+ ++ + DL+ + R++ + ++NK Sbjct: 274 IRDTADAVERIGVERSKEAIEKSDLVIMLLDATEKISIEEVDLMTMLKNRNT--LFVVNK 331 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 IDCV +K +K F +SAT G G D++ Sbjct: 332 IDCV------------DKYSDDDKIF-ISATTGEGIDEL 357 >gi|313673994|ref|YP_004052105.1| ribosome-associated gtpase enga [Calditerrivibrio nitroreducens DSM 19672] gi|312940750|gb|ADR19942.1| ribosome-associated GTPase EngA [Calditerrivibrio nitroreducens DSM 19672] Length = 440 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKSTL NR G +++I TR ++ I + + +DTPG Sbjct: 4 VGILGRPNVGKSTLFNRIAGRRIAITDDMPGVTRDMLETICHWEGKNFLLIDTPGFDLKD 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K M + +S ++ D+V L++D L ++ + +R+ IL++NKID Sbjct: 64 DIIKKEMHKQFFSALEEVDLVILMLDGKEGLHPLDEIVVSMMRERNIPFILVINKIDS-- 121 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ER L AE + I+ +SA G D +L+ + S + P Sbjct: 122 DERELNVAEFYK--LGIDDILSISANHGRNVDILLDRIVSHIKEEP 165 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 11/179 (6%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E ++F++ N R V ++G N GKS+L+N ++ + IVT TTR V Sbjct: 164 EPENFIE-NERLKIV-VIGRPNMGKSSLINAWLNEERVIVTPIPGTTRDAVDSYFEYNGE 221 Query: 71 QIVFLDTPGIFNA----KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + + +DT GI KD K ++ +I+ +D+V ++D+ + ++ + Sbjct: 222 KYILIDTAGIRKKSVMFKDRIEKYGYYRAYDSIERSDVVVALIDATEGVTEKDVKIVADA 281 Query: 127 AKRSSRLILILNKIDCVK-----PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + +I+ +NK D ++ +RL+ E K ++ K +SA + N Sbjct: 282 YELGKPVIIAINKWDLLENKAETQKRLVSDVEDKFKFIYKPKYIFISAATKKNIFKIFN 340 >gi|52843194|ref|YP_096993.1| tRNA modification GTPase TrmE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81823314|sp|Q5ZR82|MNME_LEGPH RecName: Full=tRNA modification GTPase mnmE gi|52630305|gb|AAU29046.1| GTP binding protein in thiophene and furan oxidation (GTPase) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 446 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 16/157 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G NAGKSTL+N G V+IVT TTR I+R + + + +DT G+ ++ Sbjct: 218 LVIAGRPNAGKSTLINNLAGRDVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSRLILILNKID 141 D K I+ +W +K AD V LVVD + + N LL E+ +I + NKID Sbjct: 278 DLVEKEGIKRAWQELKRADCVLLVVDINNPDQQN--SLLNELRLTLPNKIPIITVYNKID 335 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 K L + + E T +SA G G D++ Sbjct: 336 TTK---LTAKCD--------EHTVYLSAKTGEGLDEL 361 >gi|256846684|ref|ZP_05552140.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2] gi|256717904|gb|EEU31461.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2] Length = 455 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 15/158 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D+ RE+ I+D++ + ++I ILNKID Sbjct: 283 IVENIGVEKSKELINSADLILYVIDTSREIDEEDFRIYDII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K L ++ IEK +SA G D++ N Sbjct: 338 KKDIDL-------SRFPKIEKWIEISALSKMGIDNLEN 368 >gi|145296240|ref|YP_001139061.1| hypothetical protein cgR_2157 [Corynebacterium glutamicum R] gi|140846160|dbj|BAF55159.1| hypothetical protein [Corynebacterium glutamicum R] Length = 143 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D RSG V+ VG N GKSTL N VG K++I ++ +TTR +RG+V +QI+ +DT Sbjct: 8 DGFRSGFVSFVGRPNTGKSTLTNALVGEKIAITANQPETTRHPIRGLVHRDNAQIIVVDT 67 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 PG+ + + + T D++ V ++ ++ +L+ + R RL L+ Sbjct: 68 PGLHRPRTLLGERLNEAVKDTYADVDLIGFTVPANEKIGPGDRWILEAV--RRYRLKLL 124 >gi|315918500|ref|ZP_07914740.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059700|ref|ZP_07924185.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|313685376|gb|EFS22211.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|313692375|gb|EFS29210.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] Length = 442 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 10/145 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +G++ F E +D ++ +A++G NAGKS+LVNR G + +IV+ TTR + Sbjct: 168 IGKLEFPEEEEDILK-------LAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAID 220 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ KE++ + +DT GI ++S + + TIK AD+ L++D+ L Sbjct: 221 TLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQD 280 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + A+ +++++NK D VK Sbjct: 281 KRIAGIAAEERKPIVIVMNKWDLVK 305 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N +G +V+IV TR + ++ V +DT G+ A Sbjct: 9 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 68 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILNK 139 + + I+ + + AD++ VVD K ++ L +E+A K+ ++L +NK Sbjct: 69 NEFMMTKIKEQAEVAMNEADVILFVVDG----KAGLNPLDEEVAYILRKKQKPVVLCVNK 124 Query: 140 ID 141 ID Sbjct: 125 ID 126 >gi|257453165|ref|ZP_05618464.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|257467370|ref|ZP_05631681.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] Length = 438 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 10/145 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +G++ F E +D ++ +A++G NAGKS+LVNR G + +IV+ TTR + Sbjct: 164 IGKLEFPEEEEDILK-------LAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAID 216 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ KE++ + +DT GI ++S + + TIK AD+ L++D+ L Sbjct: 217 TLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQD 276 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + A+ +++++NK D VK Sbjct: 277 KRIAGIAAEERKPIVIVMNKWDLVK 301 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N +G +V+IV TR + ++ V +DT G+ A Sbjct: 5 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 64 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILNK 139 + + I+ + + AD++ VVD K ++ L +E+A K+ ++L +NK Sbjct: 65 NEFMMTKIKEQAEVAMNEADVILFVVDG----KAGLNPLDEEVAYILRKKQKPVVLCVNK 120 Query: 140 ID 141 ID Sbjct: 121 ID 122 >gi|317056789|ref|YP_004105256.1| ribosome-associated GTPase EngA [Ruminococcus albus 7] gi|315449058|gb|ADU22622.1| ribosome-associated GTPase EngA [Ruminococcus albus 7] Length = 443 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N+ +G ++SIV TR + G + + +DT GI Sbjct: 5 VVAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYGKCEWLGREFMLVDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D M R S I A+++ LV D + ++ + + K ++L +NK+D Sbjct: 65 SNDIILSQMRRQSELAITSANVIILVTDIKSGVTSTDMEVAQMLLKSGKPVVLCVNKVDN 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V E +E E N + + + F VS+ GHG D+L+ + LP Sbjct: 125 VG-EPPMELYEFYN--LGLGEPFPVSSVHGHGTGDMLDEVLKYLP 166 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+NR G + IV+ TTR + + + VF+DT GI Sbjct: 180 VAVIGKPNVGKSSLINRICGEERVIVSDIAGTTRDATDTDIENEFGKFVFIDTAGIRRKS 239 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDS 111 +S K + ++ + AD+ +V+D+ Sbjct: 240 KVLESVEKYSVLRAYMAVDRADVAVIVIDA 269 >gi|219685247|ref|ZP_03540067.1| ribosome-associated GTPase EngA [Borrelia garinii Far04] gi|219673343|gb|EED30362.1| ribosome-associated GTPase EngA [Borrelia garinii Far04] Length = 433 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 5/165 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + +++++ + K +S++IL+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEQVDLILLVLDVN-EILLEDYEIIERLRKYTSKVILVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L A + L F ++ F+VSA G + ++L S + A Sbjct: 126 KEFL---AHKFHNLGF-KRYFLVSALHRRGITKLRDFLKSEVGRA 166 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 12/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G ++SIV+ + TTR ++ ++ +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ I + I DIV L++D EL + + K+ +I++ +K Sbjct: 236 RVNEVVEYYS--INRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYVTKKGKGIIIVFSK 293 Query: 140 IDCVKPER-LLEQAEIANKLVF----IEKTFMVSATKGHGCDDVL 179 D ++ + E + K F F +S K G D + Sbjct: 294 WDLLEESKGYFETLKGRVKFFFPVLNFAPIFRISVHKKMGLDSLF 338 >gi|89890093|ref|ZP_01201604.1| GTPase [Flavobacteria bacterium BBFL7] gi|89518366|gb|EAS21022.1| GTPase [Flavobacteria bacterium BBFL7] Length = 433 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 9/181 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR + + +I TR G + +DT G + + Sbjct: 4 VAIVGRPNVGKSTLFNRLIQRREAITDAVSGVTRDRHYGKSDWNGKEFSVIDTGGYVVGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + + I AD++ +VD+ + D+ K + K +IL +NK+D Sbjct: 64 DDVFEAEIDHQVELAIDEADVIVFMVDAESGITGMDEDVAKLLRKVKKPVILAVNKVD-- 121 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 P+R + E N + + + F +S+T G G D+L+ + LP P + SDLP Sbjct: 122 NPQREQDAYEFYN--LGLSEYFTLSSTSGSGTGDLLDRIVELLPDTP----VREDSDLPR 175 Query: 204 F 204 F Sbjct: 176 F 176 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 3/134 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V+++S A+VG NAGKS+ +N +G + IVT TTR + + + + Sbjct: 167 VREDSDLPRFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTKYNRFGFEFNLV 226 Query: 76 DTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI K L + S I+HAD+ L++D+ R + ++ + Sbjct: 227 DTAGIRRKKKVKEDLEFYSVMRSVRAIEHADVCILILDATRGFDGQVQNIFWLAERNRKG 286 Query: 133 LILILNKIDCVKPE 146 +++++NK D V E Sbjct: 287 IVVLVNKWDLVDKE 300 >gi|15606936|ref|NP_214317.1| GTP binding protein Era [Aquifex aeolicus VF5] gi|8134426|sp|O67749|DER_AQUAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2984183|gb|AAC07715.1| GTP binding protein Era [Aquifex aeolicus VF5] Length = 433 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 5/166 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S V ++G N GKSTL NR +G + +IV TR + + + +DT G+ Sbjct: 2 SNRVVIIGRPNVGKSTLFNRIIGKRYAIVEDYPGVTRDKIEAKAEWAGKEFIIVDTGGLV 61 Query: 82 -NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 KD + + ++ I AD++ VVD L ++ K + + +++L++NKI Sbjct: 62 PETKDELIREVKKVVEQEIPKADVILFVVDGKEGLNPLDQEIAKYLYPYADKVLLVVNKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D ++ E+ + AE + EK F +SA G G ++L+ + L Sbjct: 122 DNLRQEKNV--AEFYT--LGFEKIFPISAQHGKGVGELLDEVVKYL 163 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 5/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G N GKS+LVN + + IV+ TTR + K+ + +DT G+ Sbjct: 177 VAFIGRPNVGKSSLVNAILKDERVIVSPIAGTTRDAIEIPFRWKDKNFILIDTAGVRRPS 236 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + + S I AD+ CLV+D+ L I +R +++ NK+D Sbjct: 237 NVEYGIEFYSVGRSLKAIDLADVCCLVIDASEGPTRQDKRLGGLIERRYKGCVIVANKMD 296 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYL 182 + I +L F++ +V ATKG G +++LN++ Sbjct: 297 ISPWSEEELEGIIRKELFFLDFAPIVFTVATKGKGVEELLNWI 339 >gi|270293804|ref|ZP_06200006.1| tRNA modification GTPase TrmE [Bacteroides sp. D20] gi|270275271|gb|EFA21131.1| tRNA modification GTPase TrmE [Bacteroides sp. D20] Length = 464 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ V+ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTVNLGGITFRFIDTAGIRETN 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ ++ A+IV +VD+ + I L +I R RLIL+ NK D Sbjct: 284 DTIENLGIERTFQKLEQAEIVLWIVDATNAVS-QIPQLTTQILPRCEGKRLILVFNKTDL 342 Query: 143 VK 144 V+ Sbjct: 343 VQ 344 >gi|158339018|ref|YP_001520195.1| GTP-binding protein EngA [Acaryochloris marina MBIC11017] gi|189037135|sp|B0C1P2|DER_ACAM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158309259|gb|ABW30876.1| GTP-binding protein engA [Acaryochloris marina MBIC11017] Length = 453 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N FVG SIV+ TTR + +V E F+DT GI K Sbjct: 179 VALVGRPNVGKSSLLNAFVGENRSIVSPISGTTRDTIDMVVRRGEQTYRFIDTAGIRRKK 238 Query: 85 D-SYHK--LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + SY I ++ I+ + +V V+D+ + L I +L++NK D Sbjct: 239 NVSYGPEFFGINRAFKAIRRSQVVLFVIDALDGVTEQDQKLAGRIIDDGRACVLVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 V + +I ++L F+E + VSA G + +LN Sbjct: 299 AVTKDTYTINEFSKQIRSRLNFMEWAEMIFVSAQTGQRVEKILN 342 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 4/167 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTLVNR G +IV TR +DT G +F+ Sbjct: 6 VAIVGRPNVGKSTLVNRLTGMMDAIVHDSPGVTRDRTYRPALWNGRDFSLVDTGGLVFDD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + A +V +VVD H++ + ++ + ++L +NK C Sbjct: 66 QTEFLPFIRQQVMIALAEATVVVMVVDGQAGPTPADHEIAHWLRQQDTPVLLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 PE+ + QA +L +++ VS G+G D+L+ + P Sbjct: 124 SPEQGITQAAQFWELS-LDEPLPVSGIHGNGTGDLLDQVVEYFSETP 169 >gi|291618407|ref|YP_003521149.1| EngA [Pantoea ananatis LMG 20103] gi|291153437|gb|ADD78021.1| EngA [Pantoea ananatis LMG 20103] gi|327394799|dbj|BAK12221.1| GTP-binding protein EngA [Pantoea ananatis AJ13355] Length = 494 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 9/175 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ + + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGMMAADQQIAKHLRSRQKATFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 P +QA + + + + ++A+ G G +L L PW+ D + Sbjct: 124 DP----DQAVVDFYSLGLGEIHAIAASHGRGVTSLLE-----TALLPWMEKVDPV 169 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + V +DT G+ Sbjct: 208 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 268 KITDTVEKFSVIKTLQAIEDANVVMLVIDARAGISDQDLSLLGFILNSGRSLVIVVNKWD 327 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E E + +L FI+ + +SA G G ++ Y CST Sbjct: 328 GLSQEVRDEVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVTEAYDCST 379 >gi|83815424|ref|YP_444485.1| Era/ThdF family GTP-binding protein [Salinibacter ruber DSM 13855] gi|83756818|gb|ABC44931.1| GTP-binding protein, Era/ThdF family [Salinibacter ruber DSM 13855] Length = 505 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFN 82 VA+VG N GKSTL NR G++ +IV TR V G K I +DT G + Sbjct: 75 LVAIVGRPNVGKSTLFNRLTGSRQAIVEDTPGVTRDRVYGEAEWKGHTIPLVDTGGYVPR 134 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILN 138 + D Y + + + ++ AD++ VVD + I ++ KEIA + ++++ N Sbjct: 135 SDDPYERAIREQAEIALEDADVILFVVD----VTTGITEMDKEIATVLRPTETPVMVVAN 190 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K D ER + +E + + + + VS+T G DD++ L LP Sbjct: 191 KAD--NEEREWDASEFYQ--LGLGEVYPVSSTNKRGVDDMMAALVEELP 235 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 V+LVG NAGKS+LVN +G +IVT + TTR V+ +V + ++ +DT G+ + Sbjct: 248 VSLVGKPNAGKSSLVNATLGFDRAIVTERPGTTRDTVQSVVQYEGRDLMLVDTAGMQKRS 307 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D S I+ D+ LV+D+ EL +L E+ + +++ +NK D Sbjct: 308 KADGVEFYATVRSERAIRAGDVCVLVLDATEELHKQDLSVLSEVNEHKKGMVVAVNKWDL 367 Query: 143 V 143 V Sbjct: 368 V 368 >gi|307611884|emb|CBX01600.1| hypothetical protein LPW_32871 [Legionella pneumophila 130b] Length = 446 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 12/155 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G NAGKSTL+N G V+IVT TTR I+R + + + +DT G+ ++ Sbjct: 218 LVIAGRPNAGKSTLINNLAGRDVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSD 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K I+ +W +K AD V LVVD ++ + + ++ + L+ +I + NKID Sbjct: 278 DLVEKEGIKRAWQELKRADCVLLVVDINNPDQQDSLLNELRLTLPNKIPIITVYNKIDTT 337 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 K L + + E T +SA G G D++ Sbjct: 338 K---LTAKCD--------EHTVYLSAKTGEGLDEL 361 >gi|257462859|ref|ZP_05627265.1| GTP-binding protein [Fusobacterium sp. D12] Length = 438 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 10/145 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +G++ F E +D ++ +A++G NAGKS+LVNR G + +IV+ TTR + Sbjct: 164 IGKLEFPEEEEDILK-------LAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAID 216 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ KE++ + +DT GI ++S + + TIK AD+ L++D+ L Sbjct: 217 TLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQD 276 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + A+ +++++NK D VK Sbjct: 277 KRIAGIAAEERKPIVIVMNKWDLVK 301 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N +G +V+IV TR + ++ V +DT G+ A Sbjct: 5 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 64 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILNK 139 + + I+ + + AD++ VVD K ++ L +EIA K+ ++L +NK Sbjct: 65 NDFMMTKIKEQAEVAMNEADVILFVVDG----KAGVNPLDEEIAYILRKKQKPVVLCVNK 120 Query: 140 ID 141 ID Sbjct: 121 ID 122 >gi|58338215|ref|YP_194800.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus NCFM] gi|227902598|ref|ZP_04020403.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796] gi|75357100|sp|Q5FHQ5|MNME_LACAC RecName: Full=tRNA modification GTPase mnmE gi|58255532|gb|AAV43769.1| thiophene and furan oxidation protein [Lactobacillus acidophilus NCFM] gi|227869687|gb|EEJ77108.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796] Length = 461 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGQPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V L++D+ +EL L+ E S + I+ILNK Sbjct: 282 IHHTDDKVEKIGVERSKKALERADLVLLLIDASKELTAEDKSLINE--TDSKKRIIILNK 339 Query: 140 ID 141 D Sbjct: 340 SD 341 >gi|95929981|ref|ZP_01312721.1| tRNA modification GTPase TrmE [Desulfuromonas acetoxidans DSM 684] gi|95133950|gb|EAT15609.1| tRNA modification GTPase TrmE [Desulfuromonas acetoxidans DSM 684] Length = 458 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 9/162 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N VG +IVT+ TTR I++ ++ I +DT GI ++ D Sbjct: 228 ILGKPNVGKSSLLNLLVGEDRAIVTNIPGTTRDIIQETITLHGYPITVIDTAGIRDSDDP 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + + + + I AD++ +VD + ++I +K + + R I ++NK C KP+ Sbjct: 288 IEQDGVSRAKNQIGSADVILYMVDGSQPFDISIVQDIKLLP--ADRFIFVVNK--CDKPD 343 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++++I+N FI F +S + G + ++N + L L Sbjct: 344 FDFQESQISN---FI--NFSISVKENTGVEQLINGILDKLNL 380 >gi|317060485|ref|ZP_07924970.1| GTP-binding protein [Fusobacterium sp. D12] gi|313686161|gb|EFS22996.1| GTP-binding protein [Fusobacterium sp. D12] Length = 442 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 10/145 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +G++ F E +D ++ +A++G NAGKS+LVNR G + +IV+ TTR + Sbjct: 168 IGKLEFPEEEEDILK-------LAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAID 220 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ KE++ + +DT GI ++S + + TIK AD+ L++D+ L Sbjct: 221 TLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQD 280 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + A+ +++++NK D VK Sbjct: 281 KRIAGIAAEERKPIVIVMNKWDLVK 305 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N +G +V+IV TR + ++ V +DT G+ A Sbjct: 9 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 68 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILNK 139 + + I+ + + AD++ VVD K ++ L +EIA K+ ++L +NK Sbjct: 69 NDFMMTKIKEQAEVAMNEADVILFVVDG----KAGVNPLDEEIAYILRKKQKPVVLCVNK 124 Query: 140 ID 141 ID Sbjct: 125 ID 126 >gi|292492503|ref|YP_003527942.1| small GTP-binding protein [Nitrosococcus halophilus Nc4] gi|291581098|gb|ADE15555.1| small GTP-binding protein [Nitrosococcus halophilus Nc4] Length = 464 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR ++ ++V + TR GI E + +DT GI Sbjct: 4 LVALVGRPNVGKSTLFNRLTRSRDALVADQPGVTRDRKYGIARYGEQSFLVVDTGGITEQ 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + +LM + I+ ADI+ +VD L + +++ + L L++NK + Sbjct: 64 ESGVGELMRVQAQLAIEEADIILFLVDGREGLSALDETIAEQLRRAQKPLKLVINKTEG- 122 Query: 144 KPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +Q +A++ + + + +SA +G G +L L + LPL Sbjct: 123 -----RDQELVASEFYRLGLGEPATISAQQGQGVGGLLQDLSTLLPL 164 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 12/178 (6%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K+ +R A+VG N GKSTLVNR +G + + TTR + + Sbjct: 165 EGKEEAGIQARGLQFAVVGRPNVGKSTLVNRLLGEERVLSFEAPGTTRDSIAIPFCHQGQ 224 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLK 124 +DT GI D K I + I+ A +V LV+D+ E +++ L+ Sbjct: 225 DYTLVDTAGIRRRSKILDMLEKFSIAKTLEAIEAAQVVILVIDAREGVVEQDLHLAGLIL 284 Query: 125 EIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 E K +++ +NK D + +R +A++ +L F++ + +SA G G ++ Sbjct: 285 ESGK---AVVIAVNKWDGLSSDQRRKVKADLDRRLPFLDFARVHFISALHGSGVGELF 339 >gi|294784390|ref|ZP_06749681.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27] gi|294487962|gb|EFG35317.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27] Length = 455 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 15/158 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D+ RE+ I+D++ + ++I ILNKID Sbjct: 283 IVENIGVEKSKELINSADLILYVIDTSREIDEEDYRIYDII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K L K IEK +SA G D++ N Sbjct: 338 KKDIDL-------TKFPKIEKWIEISALSKLGIDNLEN 368 >gi|217077884|ref|YP_002335602.1| GTP-binding protein EngA [Thermosipho africanus TCF52B] gi|226741195|sp|B7IE34|DER_THEAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|217037739|gb|ACJ76261.1| GTP-binding protein EngA [Thermosipho africanus TCF52B] Length = 439 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 V +VG +N GKSTL N+ +G K SIV K TR V G VS +DT GIF N Sbjct: 3 TVLIVGKSNVGKSTLFNKLIGYKKSIVDDKEGVTRDAVSGRVSYYSKTFNIVDTGGIFEN 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D L+ + AD++ V+D+ + + L I K ++ +IL+ NK + Sbjct: 63 PEDDIINKSKDLTLKMLNEADLILFVIDAKNGITSEDYYLADIIRKSNNDVILVSNKSES 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + R+ KL F + F VSA +G D ++ + + L Sbjct: 123 ER--RVQNNLPDIYKLGFGDPIF-VSAEQGKNIDTLIERIVNVL 163 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 19/170 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V+ +G NAGKSTL N + + +VT TTR V +V+ + +F+DT G+ Sbjct: 184 VSFIGRPNAGKSTLFNSILNKERVLVTPIPGTTRDSVDELVTINGRKYLFVDTAGLRRKS 243 Query: 81 ---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + D Y + S +I+++D+V +++D+ + + R I+ Sbjct: 244 KVDYKSLDMYSNVR---SIKSIENSDVVVILIDAIEGITHQDQRIAGIAENRGKATIVAF 300 Query: 138 NKIDCV-----KPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLN 180 NKID + K E ++Q KL FI + ++ SA G D+++N Sbjct: 301 NKIDLIKNFKYKKEEFIDQ--FNEKLYFINYSPLIFLSAINKKGIDNLIN 348 >gi|239616622|ref|YP_002939944.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] gi|259645881|sp|C5CIV1|DER_KOSOT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239505453|gb|ACR78940.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 442 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 18/191 (9%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E G + + K+ +DN + VA++G NAGKS+L N VG+ S+VT TTR +V Sbjct: 166 EAGHLLDYEPEKE--EDNLK---VAIIGKPNAGKSSLFNSIVGSDRSLVTEIPGTTRDMV 220 Query: 62 RGIVSEKESQIVFLDTPGI-----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 + + F+DT G+ K+ + ++R + I+ +DI LV+D+ + Sbjct: 221 DETIEIDGMPVTFIDTAGMRRKSKVGVKNVEYYSVMR-AVDAIERSDICILVIDATLGIS 279 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIANKLVFIEKTFMV--SATK 171 + + KR +I + NK D + E LL E +L FI+ + +V SAT+ Sbjct: 280 NQDQRIAGLVEKRGKGIITVFNKSDLLNEKHKESLLSSFE--RELYFIDYSPVVFTSATE 337 Query: 172 GHGCDDVLNYL 182 G G D++L+ L Sbjct: 338 GFGIDELLDKL 348 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 3/165 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 V +VG N GKSTL NR VG + +I+ + TR V G V + +DT G+F+ Sbjct: 2 ATVLIVGRPNVGKSTLFNRLVGGRRAIIDDQPGVTRDFVFGRVFWQHKSFEVVDTCGLFD 61 Query: 83 A-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + KD + M ++ + + D++ VVD + L D+ + + K R+IL+ NK++ Sbjct: 62 SPKDIIEEKMKEVTLALLSEGDLLLFVVDGRKGLTSADMDIAETLRKSKKRVILVANKVE 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 V L E+ + L F E +SA G D +L + TL Sbjct: 122 NVDKFTLEVLPELYS-LGFGE-PIPISAEHGLNIDVLLEKIIKTL 164 >gi|187251665|ref|YP_001876147.1| putative GTPase [Elusimicrobium minutum Pei191] gi|186971825|gb|ACC98810.1| putative GTPase [Elusimicrobium minutum Pei191] Length = 449 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 13/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA++G NAGKS+L+N VG +IV+ TTR V I K +I+ DT GI A Sbjct: 216 VAILGVPNAGKSSLLNAIVGFDRAIVSEHSGTTRDTVEEIADFKGHKIILTDTAGIKEGA 275 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK--ID 141 D + +R S + +DI+ D+ ++ H+L + + ++IL NK I+ Sbjct: 276 LDVAEREGMRRSLNAADKSDIIIFTADTSKKHLQADHELWNSLKIKGKKIILACNKKDIN 335 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 PE L E ++ N VS+ G G +++ N + S L Sbjct: 336 FTPPEFLYEADKVVN----------VSSKTGEGVEELKNSVISLL 370 >gi|119476373|ref|ZP_01616724.1| predicted GTPase [marine gamma proteobacterium HTCC2143] gi|119450237|gb|EAW31472.1| predicted GTPase [marine gamma proteobacterium HTCC2143] Length = 466 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V + TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTKTRDALVANLPGLTRDRKYGEARVGSRRFIVIDTGGITGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + AD V + DS L H L ++ + + I NKID V Sbjct: 64 EEGIDVAMAQQSMLAVDEADAVFFLCDSRAGLTAGDHALANKLRQSDKPVYYIANKIDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P + A+ + IEK + ++AT G G ++L+ + P Sbjct: 124 DPN--VAMADFYQ--LGIEKLYPMTATHGKGVRNLLDDMLLQFP 163 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFL 75 QD R +A++G N GKSTLVNR +G + IV TTR + I E+E Q + Sbjct: 172 QDKHRGTKIAIIGRPNVGKSTLVNRLLGEERVIVFDHPGTTRDSIY-IDYEREGQPYTLI 230 Query: 76 DTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ N +++ K I + I A++V LV+D+ L LL Sbjct: 231 DTAGVRRRKNVRETVEKFSIVKALKAIDDANVVVLVMDAAEGLVDQDLHLLGHAIDAGRA 290 Query: 133 LILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 L++ LNK D + + + + E+ +L FI+ + +SA G G Sbjct: 291 LVIALNKWDGLDIDHKTWVKRELERRLQFIDFAEIHFISALHGTGV 336 >gi|270308559|ref|YP_003330617.1| GTP-binding protein [Dehalococcoides sp. VS] gi|270154451|gb|ACZ62289.1| GTP-binding protein [Dehalococcoides sp. VS] Length = 441 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 7/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+ + +A+VG N GKSTL+NR ++I TTR + VS + +++ +DT Sbjct: 2 NNTTPIIAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRKLIMVDTG 61 Query: 79 GIFNAKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 G+ +S ++ I++S + IK AD+V LVVD L + +++ I + +IL+ Sbjct: 62 GLDPDIESVIGQQVNIQISLA-IKEADLVLLVVDVKTGLVTSDYEMADIIRRTGKSVILV 120 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK D +K + + A L F E + ++SA G+G D+++ + LP P Sbjct: 121 ANKADNLK---MGQDAAEFYSLGFGEPS-VISAFHGNGISDLMDRVLEELPDQP 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 8/169 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +DNS +ALVG N GKSTL+N F+G + SIV++ TTR + + + ++ +D Sbjct: 176 EDNSVK--LALVGRANVGKSTLLNTFLGQERSIVSNIPGTTRDAIDTPLDFNGTNVLLID 233 Query: 77 TPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T GI + K + + + AD+V LV+D+ + + + + + Sbjct: 234 TAGIRRRGKVESGVEKYSVLRALKAVDRADVVLLVMDTEELVTAQDTHIAGYVRDTAKGI 293 Query: 134 ILILNKIDCVKPERLLEQAE-IANKLVFIEKT--FMVSATKGHGCDDVL 179 I+ILNK D K + E + I ++ F++ VS G D ++ Sbjct: 294 IIILNKWDLGKGQDKAEVTQTIQSRFKFLDYAPILFVSGKTGRDVDTII 342 >gi|86749994|ref|YP_486490.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris HaA2] gi|86573022|gb|ABD07579.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris HaA2] Length = 457 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 98/228 (42%), Gaps = 24/228 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R + + + DT G + Sbjct: 226 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRALTLPHGGKAMLSDTVGFISN 285 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA--KRSSRLILIL 137 + R + + AD++ V D SH + + D +L+++ R++ I Sbjct: 286 LPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQERDVDAVLRQLGVEADGGRILEIW 345 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW------ 191 NKID +PE+ E IA + FMVSA G G D++L L LA W Sbjct: 346 NKIDRFEPEQREELRNIAARRSEDRPCFMVSAVSGEGVDELL--LAIEQRLAAWRSVLDL 403 Query: 192 -VYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK 238 + +AD + + H AE+ L KE+ +T + +E K Sbjct: 404 TIDAADG-AGVSWLHRNAEV--------LSKELRDGRYAMTVRVDETK 442 >gi|225021514|ref|ZP_03710706.1| hypothetical protein CORMATOL_01535 [Corynebacterium matruchotii ATCC 33806] gi|224945896|gb|EEG27105.1| hypothetical protein CORMATOL_01535 [Corynebacterium matruchotii ATCC 33806] Length = 484 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + I + DT G Sbjct: 52 TVAIVGRPNVGKSTLVNRFLGRREAVVEDFPGVTRDRISYIADWGGQRFWVQDTGGWDPN 111 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + R + + ++ AD++ +VVD+ + + +++ S +IL+ NK D Sbjct: 112 VKGIHGAIARQAETAMETADVIVMVVDTKVGITETDAVMARKLHGASVPVILVANKFDSD 171 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++ A++A + + VSA G G DVL+ + + P P Sbjct: 172 -----MQYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRSFPDQP 214 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ G + S+V TT V +V F+DT G + Sbjct: 226 VALVGKPNVGKSSLLNKIAGEERSVVDDVAGTTVDPVDSLVQLDGHLWKFIDTAGLRKKV 285 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ ++DS + +L I L+L+ NK Sbjct: 286 KNAQGHEYYASLRTR-GVIDAAEVCLFMIDSSEPVSEQDQRVLSMILDAGKALVLVFNKW 344 Query: 141 DCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 D + +R E + +I +L I + +SA G + Y+ L Sbjct: 345 DLMTEDRRWELERDIEQQLAHIPWVRRVNISAKTGRALQKLEPYMEEAL 393 >gi|300869581|ref|ZP_07114162.1| GTP-binding protein engA [Oscillatoria sp. PCC 6506] gi|300332449|emb|CBN59362.1| GTP-binding protein engA [Oscillatoria sp. PCC 6506] Length = 454 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N F+G +IV+ TTR + +V + +DT GI K Sbjct: 179 VAIVGRPNVGKSSLLNAFLGETRAIVSPISGTTRDAIDTVVERNGTTYRLIDTAGIRKKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ AD+V LV+D+ + L I++ ++++NK D Sbjct: 239 NVEYGPEFFGINRAFKAIRRADVVLLVIDAVDGVTDQDQKLADRISEEGRACVIVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIEKTFM--VSATKGHGCDDVL 179 ++ + + E+ +L F++ M VSAT G + +L Sbjct: 299 AIEKDSTTIYDYEKEVKTRLYFVDWAEMIFVSATTGQRVEKIL 341 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPG-IF 81 VA++G N GKST+VNRF ++ SIV + T R+ ++E Q+V DT G +F Sbjct: 6 VAIIGRPNVGKSTIVNRFAESQDSIVHDQPGMTRDRTYKNAYWGDREFQVV--DTGGLVF 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + L+ + + + A VVD L + + + ++ ++L +NK Sbjct: 64 DDNTEFLPLIREQAMAALAEASAAIFVVDGQIGLTGGDEAIAEWLRQQRVPVLLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C L QA +L E F +S G+G ++L+ L S LP Sbjct: 122 CESETEGLTQAAQFWELGLGEP-FPISGIHGNGTGELLDELISHLP 166 >gi|257784575|ref|YP_003179792.1| GTP-binding proten HflX [Atopobium parvulum DSM 20469] gi|257473082|gb|ACV51201.1| GTP-binding proten HflX [Atopobium parvulum DSM 20469] Length = 437 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 22/187 (11%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 NS + V+LVG TNAGKSTL+N+ GA V T R + ++ +IV DT Sbjct: 206 NSGTFSVSLVGYTNAGKSTLLNQLTGADVYAKDELFATLDPTTRALSLDEGRKIVLTDTV 265 Query: 79 GIF-----NAKDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAK 128 G N +S+ +I + AD++ LV D+ +E+ V + +LK+I Sbjct: 266 GFIQKLPTNLIESFKSTLIE-----AQEADLLLLVADATDKNLSKEIAV-VRSILKDIEA 319 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 S +L+LNK+D + + L + VFI SA KG G + +L+ + Sbjct: 320 DKSDQVLVLNKVDLLSEQELQMLKALYPDAVFI------SAQKGTGINGLLHKIQEIAST 373 Query: 189 APWVYSA 195 V SA Sbjct: 374 GDKVVSA 380 >gi|164686452|ref|ZP_02210480.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM 16795] gi|164604463|gb|EDQ97928.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM 16795] Length = 462 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 7/159 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N +G +IVT TTR ++ V+ K + +DT G Sbjct: 222 RDGLKTVIIGKPNVGKSSLLNSILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ ++ S +I AD+V +V+DS + L ++L+ + +S + I++LNK Sbjct: 282 IRETEDIVEKIGVQKSKESIDSADLVIIVLDSSKSLTDEDLEILE--SAKSKKTIVLLNK 339 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 ID ++ +++ I + V + +SA K G + + Sbjct: 340 IDL---DQAIDETAI-EEFVGKDNIIKISALKNEGIEQI 374 >gi|160889085|ref|ZP_02070088.1| hypothetical protein BACUNI_01506 [Bacteroides uniformis ATCC 8492] gi|317479360|ref|ZP_07938494.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_1_36] gi|156861552|gb|EDO54983.1| hypothetical protein BACUNI_01506 [Bacteroides uniformis ATCC 8492] gi|316904434|gb|EFV26254.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_1_36] Length = 464 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ V+ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTVNLGGITFRFIDTAGIRETN 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ ++ A+IV +VD+ + I L +I R RLIL+ NK D Sbjct: 284 DTIENLGIERTFQKLEQAEIVLWIVDATNAVS-RIPQLTTQILPRCEGKRLILVFNKTDL 342 Query: 143 VK 144 V+ Sbjct: 343 VQ 344 >gi|110597255|ref|ZP_01385543.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] gi|110341091|gb|EAT59559.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] Length = 474 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 22/170 (12%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKSTL+N +G + SIV+H TTR + ++ DT G+ A+++ Sbjct: 236 IAGRPNAGKSTLLNTLLGLERSIVSHMPGTTRDYIEECFLYNKTMFRLTDTAGLREAEEA 295 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--------RSSRLILILN 138 ++ S+ I AD++ ++D + + D E+A+ R++R+I+ N Sbjct: 296 VEHEGVKRSYRKIAEADLIVYILD------LTLDDYADEVARILEFKSEYRNARMIVAAN 349 Query: 139 KIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID PER+ E E V +SA KG G + L L ST+ Sbjct: 350 KIDLASESPERIQELREATGCDV-----CGISAAKGEGL-ETLKELMSTM 393 >gi|220927637|ref|YP_002504546.1| GTP-binding proten HflX [Clostridium cellulolyticum H10] gi|219997965|gb|ACL74566.1| GTP-binding proten HflX [Clostridium cellulolyticum H10] Length = 596 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 20/185 (10%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ + + F++ N S VA+VG TNAGKSTL+NRF G+ V + T Sbjct: 357 ELKHLEKRRQFLRSNRTSNNTPVVAIVGYTNAGKSTLLNRFCGSSVFVEDKLFATLDPSA 416 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK---HADIVCLVVDSHRE---L 115 R + + V +DT G + H L I ST++ HAD++ VVD+ E + Sbjct: 417 RQLTLSDGREAVLIDTVGFI--RKLPHDL-IEAFKSTLEEAVHADMLLHVVDASNENVSM 473 Query: 116 KVN-IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +++ + LL+E+ + R IL+LNK D V+ +R + V +SA G+G Sbjct: 474 QISVVEKLLEELGASTKRTILVLNKQDLVQEDRRISS-------VGYSAVCEISAVTGYG 526 Query: 175 CDDVL 179 + +L Sbjct: 527 IEQLL 531 >gi|217032968|ref|ZP_03438441.1| hypothetical protein HPB128_141g1 [Helicobacter pylori B128] gi|216945297|gb|EEC23972.1| hypothetical protein HPB128_141g1 [Helicobacter pylori B128] Length = 102 Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 60/95 (63%), Gaps = 5/95 (5%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIF 62 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 LDTPG+ + + ++ M+ + + A++ ++ Sbjct: 63 LDTPGLRHQEKLLNQCMLSQALKAMGDAELCVFLL 97 >gi|282855425|ref|ZP_06264746.1| ribosome-associated GTPase EngA [Pyramidobacter piscolens W5455] gi|282586721|gb|EFB91968.1| ribosome-associated GTPase EngA [Pyramidobacter piscolens W5455] Length = 443 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 5/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 V++VG N GKS+L NR +G + +IV TR + G V K+ +DT G + Sbjct: 4 VSIVGRPNVGKSSLFNRIIGERRAIVDDMPGVTRDRLYGCVQWKDKSFYVVDTGGLLLKD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 KD + M + I+ +D+V +VD R + D+ + + SS +IL +NKID Sbjct: 64 KDPIMEGMKDQIFQAIEESDVVIFMVDGSRGVTWMDEDVAQVLRSHSSMVILAVNKIDDF 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E + A L F EK VSA G D++L+ + L Sbjct: 124 SHE---DDVAEAYSLGF-EKVVGVSALHDRGIDELLDQVVQML 162 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 4/138 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--- 80 VALVG N GKS+++N G++ S+V+ TTR + ++ K + +DT G+ Sbjct: 177 SVALVGRPNVGKSSILNALTGSQRSLVSDIPGTTRDSIDAVLEYKGERFRIVDTAGLRRK 236 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 KD + + D+ V+D L+ EI R ++L++NK Sbjct: 237 SRVKDDIEFYSTVRTMDAVDQCDVAIFVMDVRELATEQDQRLVGEILARGKGVVLVVNKW 296 Query: 141 DCVKPERLLEQAEIANKL 158 D + P E+ KL Sbjct: 297 DLL-PNTPETGDEVNGKL 313 >gi|325185944|emb|CCA20448.1| tRNA modification GTPase GTPBP3 putative [Albugo laibachii Nc14] Length = 508 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 18/204 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKS+L+N +IV+ TTR IVR ++ K ++ DT GI Sbjct: 271 VAIIGPPNAGKSSLLNHLAQRPAAIVSSIAGTTRDIVRVPLNLKGYAVILCDTAGIRETD 330 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K+ + + ADI L+VD + DL K ++ I++ NK D + Sbjct: 331 DLIEKVGVTRARECADEADICVLMVDGQL-YQTEWEDLSKSW---TTNTIIVCNKSDLID 386 Query: 145 PE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 E R L+++ + + E+ ++S G G D ++ L ++ A S D Sbjct: 387 DESTLRKLQRSITSRTSIPAERVHLISCLNGSGIDALIEALGESVQ-AKVSSSGD----- 440 Query: 202 PMFHFTAEITREKLFLHLHKEIPY 225 + ITRE+ HL K I Y Sbjct: 441 -----ASVITRERHRQHLEKCINY 459 >gi|237732490|ref|ZP_04562971.1| GTP-binding protein EngA [Citrobacter sp. 30_2] gi|226908029|gb|EEH93947.1| GTP-binding protein EngA [Citrobacter sp. 30_2] Length = 504 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 15/185 (8%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F NE + V VALVG N GKSTL NR + ++V TR G Sbjct: 8 FLNEALNMVP------VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEI 61 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + + + +DT GI +D M S I+ AD+V +VD+ L + K + Sbjct: 62 EGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLR 121 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R L+ NK D + P +QA + + + + + ++A+ G G +L ++ Sbjct: 122 SRQKPTFLVANKTDGLDP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV----- 172 Query: 188 LAPWV 192 L PW+ Sbjct: 173 LLPWM 177 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 219 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRG 278 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 279 KITEAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 338 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 339 GLTQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 379 >gi|326797440|ref|YP_004315260.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1] gi|326548204|gb|ADZ93424.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1] Length = 459 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT+ TTR ++R + + +DT G+ ++ Sbjct: 224 VVIAGRPNAGKSSLLNTLSGKDSAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRDSP 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSR--LILILNKID 141 D ++ I+ +W I AD + L+VDS + ++ E +A+ SR L L+ NK+D Sbjct: 284 DEVEQIGIQRAWDEIHKADRILLMVDSQTVGSKDPEEIWPEFVAQLPSRDKLTLVRNKVD 343 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K LE N L + +SA G G D + +L + + Sbjct: 344 LTKETTGLES---INDLPILS----LSAKTGQGIDALSQHLKAVM 381 >gi|307321975|ref|ZP_07601356.1| GTP-binding proten HflX [Sinorhizobium meliloti AK83] gi|306892399|gb|EFN23204.1| GTP-binding proten HflX [Sinorhizobium meliloti AK83] Length = 465 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 27/194 (13%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 230 IVALVGYTNAGKSTLFNRMTGAGVLAEDMLFATLDPTLRRLKLPHGRMVILSDTVGFISD 289 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA-------KRSSRLIL 135 ++ R + + AD+V V D S + + D+L+ +A + + R++ Sbjct: 290 LPTHLVAAFRATLEEVLEADLVLHVRDLSDPDNQAQASDVLRILADLGIDEKEGAERIVE 349 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL----------CST 185 + NKID V+PE + +A + K + T VSA G G DD+L + C+ Sbjct: 350 VWNKIDKVEPE--VREA-LVKKAASADNTVAVSAMTGEGVDDLLTEIGRRLSGVMTECTV 406 Query: 186 ------LPLAPWVY 193 L L PWVY Sbjct: 407 VLGLDQLQLLPWVY 420 >gi|322434484|ref|YP_004216696.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX9] gi|321162211|gb|ADW67916.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX9] Length = 622 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G N GKSTL NR G++ SIV + TR + G + + + +DT G+ Sbjct: 141 LIAVCGRPNVGKSTLFNRLTGSRRSIVGDEPGITRDRIYGEIEWQNVKARLVDTGGVVPD 200 Query: 84 KDSY-HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ + R + ++ AD + +VVD EL +L + + K L +NK+D Sbjct: 201 DEALIPSEIFRQAQVALQEADAIVMVVDGRTELASPDMELARLLMKGGKPTFLAVNKMDS 260 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + AE +L F + +SA G G D+L+ + + LP Sbjct: 261 ---ESMYAAAENFRRLGF-KNVLPISAEHGSGIGDLLDEVFAVLP 301 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 5/132 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR VA++G N GKSTL+N +IV+ TTR V IV +K F+DT G Sbjct: 344 SRETKVAIIGRPNVGKSTLLNALTETDRAIVSPIAGTTRDAVDEIVEKKGHIFRFVDTAG 403 Query: 80 I---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LIL 135 I K KL + ++ ++ AD+ LV+D+ E NI + A S R +I+ Sbjct: 404 IRKKGKTKMMAEKLSVIMARKHLEAADVSLLVIDAQ-EGVTNIDANIGGYAHESGRSVII 462 Query: 136 ILNKIDCVKPER 147 ++NK D V R Sbjct: 463 VINKWDLVTTAR 474 >gi|219684291|ref|ZP_03539235.1| ribosome-associated GTPase EngA [Borrelia garinii PBr] gi|219672280|gb|EED29333.1| ribosome-associated GTPase EngA [Borrelia garinii PBr] Length = 433 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 5/165 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + +++++ + K +S++IL+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEQVDLILLVLDVN-EILLEDYEVIERLRKYTSKVILVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L A + L F ++ F+VSA G + ++L S + A Sbjct: 126 KEFL---AHKFHNLGF-KRYFLVSALHRRGITKLRDFLKSEVGRA 166 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G ++SIV+ + TTR ++ ++ +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D EL + + K+ +I++ +K Sbjct: 236 RVNEVVEYYS--VNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYVTKKGKGIIIVFSK 293 Query: 140 IDCVKPER 147 D ++ + Sbjct: 294 WDLLEESK 301 >gi|15965218|ref|NP_385571.1| putative GTP-binding protein [Sinorhizobium meliloti 1021] gi|307309233|ref|ZP_07588904.1| GTP-binding proten HflX [Sinorhizobium meliloti BL225C] gi|15074398|emb|CAC46044.1| Putative GTP-binding protein [Sinorhizobium meliloti 1021] gi|306900379|gb|EFN30995.1| GTP-binding proten HflX [Sinorhizobium meliloti BL225C] Length = 465 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 27/194 (13%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 230 IVALVGYTNAGKSTLFNRMTGAGVLAEDMLFATLDPTLRRLKLPHGRMVILSDTVGFISD 289 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA-------KRSSRLIL 135 ++ R + + AD+V V D S + + D+L+ +A + + R++ Sbjct: 290 LPTHLVAAFRATLEEVLEADLVLHVRDLSDPDNQAQASDVLRILADLGIDEKEGAERIVE 349 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL----------CST 185 + NKID V+PE + +A + K + T VSA G G DD+L + C+ Sbjct: 350 VWNKIDKVEPE--VREA-LVKKAASADNTVAVSAMTGEGVDDLLTEIGRRLSGVMTECTV 406 Query: 186 ------LPLAPWVY 193 L L PWVY Sbjct: 407 VLGLDQLQLLPWVY 420 >gi|224534791|ref|ZP_03675363.1| ribosome-associated GTPase EngA [Borrelia spielmanii A14S] gi|224514039|gb|EEF84361.1| ribosome-associated GTPase EngA [Borrelia spielmanii A14S] Length = 433 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRLLDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + + +++++ K SS++IL+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDVN-EILLEDYQIIEKLRKYSSKVILVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KEFL---AHEFHNLGF-KRYFLVSAVHCRGITKLRDFL 159 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G ++SI++ + TTR ++ V+ +DT GI Sbjct: 176 VGIIGKPNSGKSTLINHLSGNEISIISDQPGTTRDFIKTKVTRNGKVFEIIDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D EL + + K+ +I++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYVVKKGKGIIIVFSK 293 Query: 140 IDCVKPER 147 D V+ + Sbjct: 294 WDLVEESK 301 >gi|262038122|ref|ZP_06011523.1| tRNA modification GTPase TrmE [Leptotrichia goodfellowii F0264] gi|261747846|gb|EEY35284.1| tRNA modification GTPase TrmE [Leptotrichia goodfellowii F0264] Length = 455 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 71/116 (61%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKSTL+N + + +IVTH TTR I+ I++ K +V +DT GI +D Sbjct: 223 IVGKPNVGKSTLLNSLLKEERAIVTHIPGTTRDIIEEIINIKGIPLVLVDTAGIRKTEDI 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I+ AD++ LV+D+ +EL+ +++++I K + + I++LNKID Sbjct: 283 VENIGVEKSKQFIEKADLILLVLDASKELEKEDIEVIEKIKKNNKKTIVLLNKIDL 338 >gi|13357944|ref|NP_078218.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762344|ref|YP_001752466.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920231|ref|ZP_02931603.1| GTP-binding protein EngA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508601|ref|ZP_02958112.1| GTP-binding protein EngA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701797|ref|ZP_02971472.1| GTP-binding protein EngA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|26006745|sp|Q9PQA7|DER_UREPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037169|sp|B1AJ22|DER_UREP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|11280266|pir||B82899 conserved hypothetical ATP/GTP-binding protein UU383 [imported] - Ureaplasma urealyticum gi|6899367|gb|AAF30793.1|AE002135_9 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827921|gb|ACA33183.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902626|gb|EDT48915.1| GTP-binding protein EngA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676057|gb|EDT87962.1| GTP-binding protein EngA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701078|gb|EDU19360.1| GTP-binding protein EngA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 442 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 8/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+L NR + + SIV + TR + I + + +DT GI ++ Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDIGNWLTRSFMLIDTGGIISS 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 KD+Y + I A+ + +V + + + I +LKE AK ++IL++NKI Sbjct: 63 KDTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAK-DKKIILVINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + K L + E+ + K F +SA G G D+L+ L +P+ Sbjct: 122 ESEK--YYLNEGELYS--FGFGKFFKISAEHGIGMGDLLDELVKDMPI 165 Score = 36.2 bits (82), Expect = 5.8, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-- 84 ++G N GKS+L N +G + IV + +TR + + + +DT GI Sbjct: 179 IIGRPNVGKSSLTNTILGEQRVIVNAEAGSTRDSIDNDFNYYNKKYTIIDTAGIRRKGKI 238 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 +S K + + I+ + ++ LV+D K Sbjct: 239 VESVEKYAVLRTKKAIERSQLILLVLDGSEPFK 271 >gi|71667159|ref|XP_820531.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70885880|gb|EAN98680.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 380 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/253 (21%), Positives = 115/253 (45%), Gaps = 16/253 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N+GK++L+N + + V+++ +T+ ++G+ + +Q+V LDTPG+ Sbjct: 93 LALLGPQNSGKTSLLNALSLSHIGAVSNRSGSTKDWIKGVATVHNTQLVLLDTPGVVIIN 152 Query: 82 NAKD-SYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLIL 135 + KD H +W + ++V L + + E K +++ + R ++L Sbjct: 153 SDKDRRRHAAPSARAWDALMVTELVLLTIPAGLGFVEPEQKAVAREVVHRASLRKMPVVL 212 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA---TKGHGCDDVL---NYLCSTLPLA 189 ++ +D V+ + E + + F ++A T GC +L ++LC Sbjct: 213 VITMMDKVQTPKHRE-LYFSMRTDFESMCLPIAAVHETSVKGCSGLLELKDFLCRYAKPG 271 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 W + ++ +D +E+ R+ F L EIP+ W +K G+ + ++ Sbjct: 272 EWEFFRNEATDATTVDRLSELLRQCFFEVLPHEIPHQMRHRIIGWTKKDSGTTEVITEVF 331 Query: 250 VERPSQKKIMLGK 262 +RP+ I K Sbjct: 332 FDRPAYMFIFYSK 344 >gi|322815503|gb|EFZ24148.1| hypothetical protein TCSYLVIO_9727 [Trypanosoma cruzi] Length = 380 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/253 (21%), Positives = 115/253 (45%), Gaps = 16/253 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N+GK++L+N + + V+++ +T+ ++G+ + +Q+V LDTPG+ Sbjct: 93 LALLGPQNSGKTSLLNALSLSHIGAVSNRSGSTKDWIKGVATVHNTQLVLLDTPGVVIIN 152 Query: 82 NAKD-SYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLIL 135 + KD H +W + ++V L + + E K +++ + R ++L Sbjct: 153 SDKDRRRHAAPSARAWDALMVTELVLLTIPAGLGFVEPEQKAVAREVVHRASLRKMPVVL 212 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSA---TKGHGCDDVL---NYLCSTLPLA 189 ++ +D V+ + E + + F ++A T GC +L ++LC Sbjct: 213 VITMMDKVQTPKHRE-LYFSMRTDFESMCLPIAAVHETSVKGCGGLLELKDFLCRYATPG 271 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIY 249 W + ++ +D +E+ R+ F L EIP+ W +K G+ + ++ Sbjct: 272 EWEFFRNEATDATTVDRLSELLRQCFFEVLPHEIPHQMRHRIIGWTKKDSGTTEVITEVF 331 Query: 250 VERPSQKKIMLGK 262 +RP+ I K Sbjct: 332 FDRPAYMFIFYSK 344 >gi|119571533|gb|EAW51148.1| Era G-protein-like 1 (E. coli), isoform CRA_c [Homo sapiens] Length = 244 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%) Query: 165 FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIP 224 FM+SA + YL + PW Y + ++ A I REKL HL +E+P Sbjct: 113 FMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHLPQEVP 172 Query: 225 YSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 Y+ T WEE G ++I+Q + V + S K+++G G I I+ EA ++ +I Sbjct: 173 YNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLMDIFLC 232 Query: 285 PVHLILFVKVQK 296 V + L VK+ K Sbjct: 233 DVDIRLSVKLLK 244 >gi|148546131|ref|YP_001266233.1| GTP-binding protein EngA [Pseudomonas putida F1] gi|166225843|sp|A5VYT9|DER_PSEP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148510189|gb|ABQ77049.1| small GTP-binding protein [Pseudomonas putida F1] Length = 487 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G S + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD V +VD+ + + + + KR+ IL+ NKID + Sbjct: 64 EVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKAAILVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +AE + + + V+ ++G G ++ + LP Sbjct: 124 DPD--VARAEFSP--MGMGNAIPVAGSQGRGISALMEAVLGHLP 163 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 10/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + +V + TTR + + F+DT G+ Sbjct: 195 IAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGDKYTFIDTAGVRKRG 254 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R I+I LNK Sbjct: 255 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRAIVIALNK 312 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 D ++P ER + E+ +L F++ +SA G G ++ Sbjct: 313 WDGMEPGERAYVKTELERRLFFVDFADIHFISALHGTGVGNL 354 >gi|306836038|ref|ZP_07469028.1| ribosome-associated GTPase EngA [Corynebacterium accolens ATCC 49726] gi|304568065|gb|EFM43640.1| ribosome-associated GTPase EngA [Corynebacterium accolens ATCC 49726] Length = 527 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 14/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V + TR V + + + DT G Sbjct: 92 TVAIVGRPNVGKSSLVNRFLGRREAVVEDQPGVTRDRVSYVADWNGQRFIVQDTGGWDPN 151 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + + AD++ +VVD+ KV I + + +A+R + +I++ NK Sbjct: 152 VKGMHADIARQAEMAMDTADVIVMVVDT----KVGITETDEVMARRLQKSPVPVIVVSNK 207 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D + A++A + + VSA G G DVL+ + + P P Sbjct: 208 FDSDN-----QYADMAQFYALGLGDPWPVSAQHGRGGADVLDEILRSFPEEP 254 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ + S+V + TT V +V E F+DT G + Sbjct: 266 VALVGRPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRKKV 325 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 NA+ + Y L R I A++ +++D+ E+ +L + + L++ N Sbjct: 326 KNAQGHEYYASLRTR---GVIDAAEVCIMLIDASEEISEQDQRVLNMVLESGKALVIAFN 382 Query: 139 KIDCVKPER 147 K D + +R Sbjct: 383 KWDLMDEDR 391 >gi|85712623|ref|ZP_01043670.1| tRNA modification GTPase [Idiomarina baltica OS145] gi|85693614|gb|EAQ31565.1| tRNA modification GTPase [Idiomarina baltica OS145] Length = 467 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 10/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ ++ Sbjct: 232 IVIAGRPNAGKSSLLNALAGRESAIVTEIAGTTRDVLREHIQIDGMPLHIIDTAGLRDSP 291 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+ AD V +VDS ++ D+ E + +I NKID Sbjct: 292 DQVERIGIERAWDEIRQADRVLFMVDSQETSAIHPDDIWPEFFAQLPDDMPFTVIRNKID 351 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + L + N + I+ +SA GHG + + +L Sbjct: 352 LTQENTGLTE---HNGIPVIQ----LSAKTGHGIEQLREHL 385 >gi|182418977|ref|ZP_02950233.1| GTP-binding protein EngA [Clostridium butyricum 5521] gi|237668464|ref|ZP_04528448.1| ribosome-associated GTPase EngA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377260|gb|EDT74828.1| GTP-binding protein EngA [Clostridium butyricum 5521] gi|237656812|gb|EEP54368.1| ribosome-associated GTPase EngA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 438 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 5/180 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL NR G ++SIV TR V +DT GI + Sbjct: 6 VAMVGRPNVGKSTLFNRLAGKRISIVQDTPGVTRDRVYAEAEWLTHTFTMIDTGGIEPER 65 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + M R + I+ AD++ +VD L H++ + K ++L++NK+D + Sbjct: 66 NDIIVQQMRRQANIAIETADVIVFIVDGKEGLTAADHEVATMLRKSKKPVVLVVNKVDSL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 K E E N + I +SA++G G D+L+ + + + D+ + M Sbjct: 126 KEED--NAWEFYN--LGIGDPITISASQGLGLGDMLDRVVENFDSSIYEQDEDEYIRIAM 181 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 + QD +A++G N GKS+L+N+ +G IV+ TTR + + +E + + Sbjct: 169 YEQDEDEYIRIAMIGKPNVGKSSLINKLLGEDRVIVSEVAGTTRDAIDSELETEEGKFIL 228 Query: 75 LDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +DT G+ K+ + + +++ I+ +D+ L++D+ + ++ + Sbjct: 229 IDTAGLRRKSKVKEEIERYSVVRTYAAIERSDVCILMIDAQEGITEQDEKIIGYAHEMRK 288 Query: 132 RLILILNKIDCV-KPERLLE--QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 +++I+NK D V K ++ L+ + ++ KL FI + +SA G VL Sbjct: 289 AIMIIVNKWDLVEKDDKTLDNFKRDLQGKLKFINYAEYLFISALTGQRTHKVL 341 >gi|110835613|ref|YP_694472.1| tRNA modification GTPase [Alcanivorax borkumensis SK2] gi|123345176|sp|Q0VKU8|MNME_ALCBS RecName: Full=tRNA modification GTPase mnmE gi|110648724|emb|CAL18200.1| tRNA modification GTPase [Alcanivorax borkumensis SK2] Length = 456 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 16/162 (9%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ ++ D Sbjct: 223 IAGKPNAGKSSLMNALAGFDAAIVTDIAGTTRDVLRESIQLDGMPLNLIDTAGLRDSADV 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKV--NIHDLLKEIAKRSSRLIL----ILNKI 140 + IR +++ ++ AD + ++VDS L N+HDLL + ++ L L +LNK Sbjct: 283 VEQEGIRRAYAEMRKADRLLVMVDSRDPLDDIHNLHDLLPQSQQQLENLDLPVTVVLNKA 342 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D L A+ F++SA G G D + +L Sbjct: 343 DLSG----LSTGPRAD------GAFVISAANGEGLDALRGHL 374 >gi|226942147|ref|YP_002797221.1| tRNA modification GTPase TrmE [Laribacter hongkongensis HLHK9] gi|254811488|sp|C1D6H7|MNME_LARHH RecName: Full=tRNA modification GTPase mnmE gi|226717074|gb|ACO76212.1| tRNA modification GTPase trmE [Laribacter hongkongensis HLHK9] Length = 450 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L+N G +++IVT TTR VR + + +DT G+ Sbjct: 221 VVLVGQPNVGKSSLMNALAGDEIAIVTDIAGTTRDTVREQIVLDGVPLHIIDTAGLRETT 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ ++ I +W ++ AD+V L+VD + +L + +R R + + NKID Sbjct: 281 DTVERIGIERTWQAVERADVVLLLVDGRDGVTAADAAILARLPERLPR-VFVHNKID 336 >gi|227549322|ref|ZP_03979371.1| GTP-binding protein EngA [Corynebacterium lipophiloflavum DSM 44291] gi|227078641|gb|EEI16604.1| GTP-binding protein EngA [Corynebacterium lipophiloflavum DSM 44291] Length = 497 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 6/179 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V++VG N GKSTLVNRF+G + ++V TR V I + DT G Sbjct: 62 TVSIVGRPNVGKSTLVNRFIGRREAVVEDHPGVTRDRVSYISDWNGRRFWVQDTGGWDPD 121 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + S S ++ +D++ +VVDS + + + + + +IL+ NK + Sbjct: 122 ARGLHAAIAHQSESAMETSDVIVMVVDSQTGITETDAVMARNLQRADVPVILVANKFES- 180 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 + + AE + + + + VSA G G DVL+ + P P +AD I++ P Sbjct: 181 -ESQWGDVAEFYS--LGLGDPWPVSALHGRGGADVLDEILRLFPAVP--RAADSITEGP 234 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VA+VG N GKS+L+N+ + S+V + TT V ++ + F+DT G + Sbjct: 237 VAIVGRPNVGKSSLLNKLSRSNRSVVDNVAGTTVDPVDELIQLDGALWKFIDTAGLRKKV 296 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R TI+ A++ +++D+ +E+ ++ + + +++ NK Sbjct: 297 KNARGHEYYASLRTR-GTIEAAEVCVVLIDASQEISEQDQRVISMVLEAGKAMVICFNKW 355 Query: 141 DCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHG 174 D + +R E E+ L ++ K +SA G G Sbjct: 356 DLMDEDRRYYFDREFDEMMGHLPWVTK-LNISADTGRG 392 >gi|119385154|ref|YP_916210.1| GTP-binding protein EngA [Paracoccus denitrificans PD1222] gi|166225834|sp|A1B4S0|DER_PARDP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119374921|gb|ABL70514.1| small GTP-binding protein [Paracoccus denitrificans PD1222] Length = 489 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 13/182 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + + +D+ G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAGRLGDLRFIVVDSAGLEIA 63 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSR-LILILNKI 140 + DS M RL+ + AD+ V+D+ + V D +I +R +R +IL NK Sbjct: 64 EDDSLQGRMRRLTERAVDEADVCLFVIDAR--VGVTAADEYFADILRRRARHVILAANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + R E + + + + +SA G G DD+ L +PLA + A + Sbjct: 122 EG----RAGEAGAMEAYALGLGEPLRISAEHGEGMDDLYRAL---VPLA-EAFEAQNVQQ 173 Query: 201 LP 202 P Sbjct: 174 AP 175 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 12/184 (6%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 +E +D+ S+ +A++G NAGKSTL+N+ +G + + TR + + Sbjct: 186 DETEDWRPSESKPLQIAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRDSISVSTNFMG 245 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKE 125 + + DT G+ D KL + ++ A++V +++D + DL + + Sbjct: 246 TPVRIFDTAGMRKKARVTDKVEKLSVADGLRAVRFAEVVVVLLDVG--IPFEQQDLRIAD 303 Query: 126 IAKRSSRLILI-LNKIDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCDDVL 179 A+ R +++ NK D KPE+L E E +L+ K VSA G G D + Sbjct: 304 FAETEGRAVVVAANKWDLEEDKPEKLKELREAFERLLPQLKGAPLVTVSARTGKGLDRLH 363 Query: 180 NYLC 183 N + Sbjct: 364 NAIL 367 >gi|167031915|ref|YP_001667146.1| GTP-binding protein EngA [Pseudomonas putida GB-1] gi|189037155|sp|B0KPJ1|DER_PSEPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166858403|gb|ABY96810.1| small GTP-binding protein [Pseudomonas putida GB-1] Length = 487 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDATWQGRSFILIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD V +VD+ + + + + KR+ IL+ NKID + Sbjct: 64 EVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKSAILVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +AE + + + V+ ++G G + ++ + LP Sbjct: 124 DPD--VARAEFSP--MGMGNAIPVAGSQGRGINALMEAVLGHLP 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 10/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + +V + TTR + + F+DT G+ Sbjct: 195 IAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGEKYTFIDTAGVRKRG 254 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R I+I LNK Sbjct: 255 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRAIVIALNK 312 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 D ++P ER + E+ +L F++ +SA G G ++ Sbjct: 313 WDGMEPGERAYVKTELERRLFFVDFADIHFISALHGTGVGNL 354 >gi|119900277|ref|YP_935490.1| tRNA modification GTPase TrmE [Azoarcus sp. BH72] gi|205829056|sp|A1KCP8|MNME_AZOSB RecName: Full=tRNA modification GTPase mnmE gi|119672690|emb|CAL96604.1| probable tRNA modification GTPase [Azoarcus sp. BH72] Length = 452 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 24/175 (13%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D + D +R G V LVG N GKS+L+N+ G +IVT TTR +R + Sbjct: 205 DALLDRARQGALLRTGMNVVLVGRPNVGKSSLLNQLAGEDRAIVTDVAGTTRDALREAIQ 264 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + + +DT G+ D ++ I +W ++ AD+V V+DS L E+ Sbjct: 265 IEGIPLHVIDTAGLRQTSDVVERIGIERTWREVERADVVLRVIDSE---GAEEDALEAEL 321 Query: 127 AKR---SSRLILILNKIDC--VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 A R ++ I ++NKID + PER E A + +SA G G D Sbjct: 322 AARCPSAAARITVVNKIDLLGLAPER----TETAGAV-----RLRLSARSGDGVD 367 >gi|30063903|ref|NP_838074.1| GTP-binding protein EngA [Shigella flexneri 2a str. 2457T] gi|110806442|ref|YP_689962.1| GTP-binding protein EngA [Shigella flexneri 5 str. 8401] gi|123146827|sp|Q0T208|DER_SHIF8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|30042158|gb|AAP17884.1| putative GTP-binding factor [Shigella flexneri 2a str. 2457T] gi|110615990|gb|ABF04657.1| putative GTP-binding factor [Shigella flexneri 5 str. 8401] gi|281601913|gb|ADA74897.1| GTP-binding protein engA [Shigella flexneri 2002017] gi|313650997|gb|EFS15397.1| small GTP-binding domain protein [Shigella flexneri 2a str. 2457T] gi|332754198|gb|EGJ84566.1| small GTP-binding domain protein [Shigella flexneri 4343-70] gi|332755561|gb|EGJ85925.1| small GTP-binding domain protein [Shigella flexneri K-671] gi|332756305|gb|EGJ86656.1| small GTP-binding domain protein [Shigella flexneri 2747-71] gi|332766344|gb|EGJ96554.1| small GTP-binding domain protein [Shigella flexneri 2930-71] gi|333001904|gb|EGK21470.1| small GTP-binding domain protein [Shigella flexneri K-218] gi|333016427|gb|EGK35758.1| small GTP-binding domain protein [Shigella flexneri K-304] Length = 490 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L++NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVVNKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|325267233|ref|ZP_08133896.1| tRNA modification GTPase TrmE [Kingella denitrificans ATCC 33394] gi|324981294|gb|EGC16943.1| tRNA modification GTPase TrmE [Kingella denitrificans ATCC 33394] Length = 458 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 8/165 (4%) Query: 19 NSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 N+R G V LVGA N GKS+L+N G V+IVT TTR VR ++ Sbjct: 209 NARQGAILRDGMSVVLVGAPNVGKSSLLNALAGDDVAIVTDIAGTTRDTVREQITLDGVP 268 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 I DT G+ D K+ I S +++AD+ ++VD + D++ + Sbjct: 269 IHITDTAGLRQTDDVVEKIGIERSEKAVQNADVALILVDPSEGINKTTRDIMCRLPAHLK 328 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 R I + NKID + A L + +SA G G D Sbjct: 329 R-IEVHNKIDLRNVQAARSDDAAAQSLSGADTVISLSAKTGAGLD 372 >gi|213021726|ref|ZP_03336173.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 172 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 13/170 (7%) Query: 38 LVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMIRLSW 96 ++N+ +G K+SI + K QTTR + GI +E Q +++DTPG+ K + ++LM + + Sbjct: 1 MLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEEKRAINRLMNKAAS 60 Query: 97 STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIAN 156 S+I ++V VV+ R + +L ++ + +IL +NK+D V+ E+A++ Sbjct: 61 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNVQ-----EKADLLP 114 Query: 157 KLVFI--EKTFM----VSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 L F+ + F+ +SA G D + + + LP A + D I+D Sbjct: 115 HLQFLASQMNFLDIVPISAETGMNVDTIASIVRKHLPEAIHHFPEDYITD 164 >gi|327398259|ref|YP_004339128.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411] gi|327180888|gb|AEA33069.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411] Length = 453 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 60/117 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG N GKS+L+N G++ +IVT TTR +V+ + LDT GI Sbjct: 222 LALVGKPNVGKSSLLNLITGSERAIVTDIPGTTRDVVKEQFNINGVPFSILDTAGIRKTN 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K+ ++ S I ADIV + D +L L++ + + +I ILNK D Sbjct: 282 DTVEKIGVKRSLKAIDEADIVLAIFDGSNDLTQEDKKLIERLKSSAKPIIAILNKTD 338 >gi|296109412|ref|YP_003616361.1| GTP-binding proten HflX [Methanocaldococcus infernus ME] gi|295434226|gb|ADG13397.1| GTP-binding proten HflX [Methanocaldococcus infernus ME] Length = 400 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 28/188 (14%) Query: 24 CVALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 V LVG TNAGK++L+N G AK + T TTR I RGI + +I+ DT G Sbjct: 173 SVGLVGYTNAGKTSLLNILCGEKKEAKNQVFTTLSTTTRRI-RGI----KRKILVTDTVG 227 Query: 80 IFNAKDSYHKLMIRLSWSTIKH---ADIVCLVVDS-------HRELKVNIHDLLKEIAKR 129 D MI STI+ +D++ LV+D+ R+LKVN H++L+++ + Sbjct: 228 FM---DDLPPFMIEAFLSTIEESSDSDLILLVIDASEDIEEIERKLKVN-HEILEKVNCK 283 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 S +I + NK D + E+ + EI KL +I VSA G G + + N + L L Sbjct: 284 SP-IITVFNKCDLITEEK---REEILTKLERYIVNPIFVSAKTGEGIERLKNLILDKLNL 339 Query: 189 APWVYSAD 196 + V + Sbjct: 340 SIGVIETN 347 >gi|227893842|ref|ZP_04011647.1| tRNA modification GTP-binding protein TrmE [Lactobacillus ultunensis DSM 16047] gi|227864331|gb|EEJ71752.1| tRNA modification GTP-binding protein TrmE [Lactobacillus ultunensis DSM 16047] Length = 461 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S ++ AD+V L++D+ ++L L++E +S + I+ILNK Sbjct: 282 IHHTEDKVEKIGVERSKKALERADLVLLLIDASQDLTAEDKALIEET--KSKKRIIILNK 339 Query: 140 ID 141 D Sbjct: 340 SD 341 >gi|56480123|ref|NP_708350.2| GTP-binding protein EngA [Shigella flexneri 2a str. 301] gi|161984887|ref|YP_408907.2| GTP-binding protein EngA [Shigella boydii Sb227] gi|56383674|gb|AAN44057.2| putative GTP-binding factor [Shigella flexneri 2a str. 301] Length = 490 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L++NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVVNKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|190171184|gb|ACE63662.1| ThdF [Enterobacter asburiae] Length = 439 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D E I++ V +SA G G DD+ N+L Sbjct: 313 IARLPAKLPITVVRNKADVTG-----ETLGISD--VNGHSLIRLSARTGEGVDDLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|220931895|ref|YP_002508803.1| small GTP-binding protein [Halothermothrix orenii H 168] gi|254783157|sp|B8CWY9|DER_HALOH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219993205|gb|ACL69808.1| small GTP-binding protein [Halothermothrix orenii H 168] Length = 438 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV + TR + V+ + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNRLAGYRISIVEGEPNVTRDRIYADVNWLDRSFIIVDTGGIDPY 64 Query: 84 KDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K M++ + I A ++ VVD L ++ + K + ++IL++NK+D Sbjct: 65 DRDQIKNMVKYQAQMAIDEASLILFVVDGRNGLTATDEEVAAFLRKSNKKVILVVNKVDD 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K +E+ + +K +SA G D+L+ + + LP Sbjct: 125 FKN---MEEDCWEFYTLGFDKLIPISAEHGKNTGDLLDEIVNMLP 166 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 9/128 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----- 79 VA++G N GKS+LVN VG + IV+ TTR + +V + + +DT G Sbjct: 180 VAIIGKPNVGKSSLVNYIVGQERVIVSDIPGTTRDAIDTLVEKNGHRYNLIDTAGLRKKS 239 Query: 80 -IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + A + Y L + I +D V +++D+ + + + ++L +N Sbjct: 240 RVKEATEYYSALR---TIKAIDRSDGVIMMIDALEGVTEQDKKIAGYAHEAGKAIVLAVN 296 Query: 139 KIDCVKPE 146 K D V+ + Sbjct: 297 KWDLVEKD 304 >gi|328955502|ref|YP_004372835.1| ribosome-associated GTPase EngA [Coriobacterium glomerans PW2] gi|328455826|gb|AEB07020.1| ribosome-associated GTPase EngA [Coriobacterium glomerans PW2] Length = 445 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 7/142 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKS+L N+ +G++ SIV+ TTR + IV +DT GI Sbjct: 181 VAIIGRPNAGKSSLFNKMIGSERSIVSDVAGTTRDAIDTIVRRDARLYRMVDTAGIRKKS 240 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + Y + M+R I AD+ LVVDS + + R ++++LNK Sbjct: 241 NVYENVEYYSMVR-GLRAIDRADVALLVVDSSIGVTEQDQKVAALAIDRGCAVVVLLNKW 299 Query: 141 DCVKPERLLEQ--AEIANKLVF 160 D + ERL EQ A + + F Sbjct: 300 DTLGEERLREQVMASVERRFTF 321 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 13/169 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGI-- 80 VA+VG N GKSTLVNR +IV T V RS + +E IV DT GI Sbjct: 5 VAVVGRPNVGKSTLVNRLAQTSEAIVHETRGVTRDRSYHDADWAGREFTIV--DTGGIES 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++D + + + + + A ++ +VVD + + + + + + L++NK+ Sbjct: 63 LKSEDVFSGSIRDQALAAAEEAAVILMVVDGRTGVTEEDETVARLLRRVDKPVFLLVNKL 122 Query: 141 DCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + ERL E + + I +SA GHG D+L+ + + LP Sbjct: 123 DNPDREGERLWEYSSLG-----IGDPLPISALHGHGTGDLLDEVVALLP 166 >gi|162138394|ref|YP_541823.2| GTP-binding protein EngA [Escherichia coli UTI89] gi|218559437|ref|YP_002392350.1| GTP-binding protein EngA [Escherichia coli S88] gi|218690631|ref|YP_002398843.1| GTP-binding protein EngA [Escherichia coli ED1a] gi|306814419|ref|ZP_07448581.1| GTP-binding protein EngA [Escherichia coli NC101] gi|226741136|sp|B7MHZ6|DER_ECO45 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783154|sp|B7MYE6|DER_ECO81 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218366206|emb|CAR03954.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli S88] gi|218428195|emb|CAR09112.2| GTPase involved in ribosome synthesis and maintenance [Escherichia coli ED1a] gi|222034222|emb|CAP76963.1| GTP-binding protein engA [Escherichia coli LF82] gi|294491525|gb|ADE90281.1| ribosome-associated GTPase EngA [Escherichia coli IHE3034] gi|305851813|gb|EFM52265.1| GTP-binding protein EngA [Escherichia coli NC101] gi|307625933|gb|ADN70237.1| GTP-binding protein EngA [Escherichia coli UM146] gi|312947088|gb|ADR27915.1| GTP-binding protein EngA [Escherichia coli O83:H1 str. NRG 857C] gi|323949171|gb|EGB45062.1| ribosome GTPase EngA [Escherichia coli H252] gi|323955752|gb|EGB51510.1| ribosome GTPase EngA [Escherichia coli H263] Length = 490 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|320161098|ref|YP_004174322.1| GTP-binding protein [Anaerolinea thermophila UNI-1] gi|319994951|dbj|BAJ63722.1| GTP-binding protein [Anaerolinea thermophila UNI-1] Length = 451 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 79/174 (45%), Gaps = 8/174 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 + S+ VALVG TNAGKSTL+NR A+V + T R + +F D Sbjct: 213 RQRSQIPVVALVGYTNAGKSTLLNRLANAEVYVADQLFATLDPTTRRVELPGGHLALFTD 272 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHR---ELKVNIHDLLKEIAKRSSR 132 T G + R + I AD++ VVD +H E +H LKEI Sbjct: 273 TVGFIQKLPTQLVAAFRATLEEIAEADLLLHVVDITHPNAFEQAQAVHATLKEIQADHIP 332 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +I +LNKID + + E+A IA F +SA KG G +++L + L Sbjct: 333 VITLLNKIDRLPDPKAAEEA-IA---YFSGSVLAISALKGMGINEMLTLVNQEL 382 >gi|190171220|gb|ACE63680.1| ThdF [Enterobacter kobei] Length = 439 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D E I++ V +SA G G DD+ N+L Sbjct: 313 IARLPAKLPITVVRNKADVTG-----ETLGISD--VNGHSLIRLSARTGEGVDDLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|161502327|ref|YP_001569439.1| GTP-binding protein EngA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863674|gb|ABX20297.1| hypothetical protein SARI_00360 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 504 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 15/185 (8%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F NE + V VALVG N GKSTL NR + ++V TR G Sbjct: 8 FLNEALNMVP------VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEV 61 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + + + +DT GI +D M S I+ AD+V +VD+ L + K + Sbjct: 62 EGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLR 121 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R L+ NK D + P +QA + + + + ++A+ G G +L ++ Sbjct: 122 SREKPTFLVANKTDGLDP----DQAVVDFYSLGLGDIYPIAASHGRGVLSLLEHV----- 172 Query: 188 LAPWV 192 L PW+ Sbjct: 173 LLPWM 177 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 219 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 278 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 279 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 338 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 339 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 379 >gi|81246371|gb|ABB67079.1| putative GTP-binding factor [Shigella boydii Sb227] Length = 503 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 17 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 76 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L++NK D + Sbjct: 77 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVVNKTDGL 136 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 137 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 176 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 218 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 277 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 278 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 337 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 338 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 378 >gi|167626215|ref|YP_001676509.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4] gi|189036208|sp|B0TQH0|MNME_SHEHH RecName: Full=tRNA modification GTPase mnmE gi|167356237|gb|ABZ78850.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4] Length = 453 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DGVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ K+ I +W I+ AD V +VD V+ H++ + Sbjct: 260 LDGMPLHIIDTAGLRDTADTVEKIGIERAWDEIRTADRVLFMVDGTTTPAVDPHEIWPDF 319 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L E + + + +SA G G DD+ +L Sbjct: 320 IDRLPNNLGVTVVRNKAD-LTGEDLAITTEAGHSV------YRISAKTGLGVDDLKQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|90194072|gb|ABD92597.1| ThdF [Volucribacter psittacicida] Length = 436 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT TTR I+R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDILREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI---LI 136 + +A D K+ I +W+ IK AD++ L++DS N+ + E ++ I +I Sbjct: 263 LRDATDEVEKIGIHRAWNEIKQADMILLMLDSTAPDNQNMEKVRSEFLQKLPPHIPVTII 322 Query: 137 LNKIDCVKPERLLEQAE 153 NK+D ++Q + Sbjct: 323 RNKVDLTGETEGIQQQQ 339 >gi|258545523|ref|ZP_05705757.1| GTP-binding protein EngA [Cardiobacterium hominis ATCC 15826] gi|258519223|gb|EEV88082.1| GTP-binding protein EngA [Cardiobacterium hominis ATCC 15826] Length = 463 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 14/179 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDTPGI-- 80 +A++G NAGKSTL+NR +G + + + TTR + + + + +DT GI Sbjct: 199 ALAVIGRPNAGKSTLLNRLIGEERLVASPVAGTTRDAIAIPYEDAQGDRFTLIDTAGIRR 258 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 D K I + I+ A++V L++D+H + LL EI +R LI+ +NK Sbjct: 259 KARVNDKIEKFSIVKTLDAIERANVVILMLDAHEGVSEQDAHLLGEITRRGRALIIAINK 318 Query: 140 IDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D + E R +++ KL F++ + F +SA HG + + LP VY A Sbjct: 319 WDHLNDEQRQAIRSQFERKLHFVDYAEVFYISAL--HGSN-----IRQLLPAVKKVYRA 370 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 1/130 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R VALVG N GKSTL N ++ S+V+ TR G + +DT G+ Sbjct: 14 RKPLVALVGRPNVGKSTLYNALTRSRDSLVSDTPGLTRDRNYGDATLAGMPCRIVDTGGL 73 Query: 81 FNAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + D + + + + + ++ ADIV VVD L + E+ + +IL +NK Sbjct: 74 LREEEDQIDRRVDKQARAAVEEADIVVFVVDGRDGLTAVDETIAAELRRSQKPVILAVNK 133 Query: 140 IDCVKPERLL 149 D P+ +L Sbjct: 134 TDFADPDLIL 143 >gi|117624740|ref|YP_853653.1| GTP-binding protein EngA [Escherichia coli APEC O1] gi|237705021|ref|ZP_04535502.1| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA] gi|91073411|gb|ABE08292.1| probable GTP-binding protein EngA [Escherichia coli UTI89] gi|115513864|gb|ABJ01939.1| putative GTP-binding protein EngA [Escherichia coli APEC O1] gi|226901387|gb|EEH87646.1| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA] Length = 503 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 17 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 76 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 77 EDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTFLVANKTDGL 136 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 137 DP----DQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 176 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 218 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 277 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 278 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 337 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 338 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 378 >gi|57233850|ref|YP_182104.1| GTP-binding protein EngA [Dehalococcoides ethenogenes 195] gi|57224298|gb|AAW39355.1| GTP-binding protein [Dehalococcoides ethenogenes 195] Length = 441 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 8/169 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +DNS +ALVG TN GKSTL+N F+G + SIV++ TTR + ++ + ++ +D Sbjct: 176 EDNSVK--LALVGRTNVGKSTLLNTFMGQERSIVSNIPGTTRDAIDTPLNFNGTNVLLID 233 Query: 77 TPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T GI + K + + + ADIV LV+D+ + + + + + Sbjct: 234 TAGIRRRGKVESGVEKYSVLRALKAVDRADIVLLVMDTEELVTAQDTHIAGYVRDTAKGI 293 Query: 134 ILILNKIDCVKPERLLEQAE-IANKLVFIEKT--FMVSATKGHGCDDVL 179 I+ILNK D K + E + I ++ F++ VS G G D ++ Sbjct: 294 IIILNKWDLGKGQDKAEVTQTIQSRFKFLDYAPILFVSGKTGRGVDTII 342 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 7/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+ + +A+VG N GKSTL+NR ++I TTR + VS + +++ +DT Sbjct: 2 NNTTPIIAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRRLIMVDTG 61 Query: 79 GIFNAKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 G+ +S ++ I++S + IK AD+V LVVD L +++ I + +IL+ Sbjct: 62 GLDPDLESIIGQQVNIQISLA-IKEADLVLLVVDVKAGLITPDYEMADIIRRTGKPVILV 120 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK D +K + ++A L F E + ++SA G G D+++ + LP P Sbjct: 121 ANKADNLK---MGQEAAEFYSLGFGEPS-VISAFHGSGISDLMDRVLEELPDQP 170 >gi|317484428|ref|ZP_07943342.1| tRNA modification GTPase TrmE [Bilophila wadsworthia 3_1_6] gi|316924316|gb|EFV45488.1| tRNA modification GTPase TrmE [Bilophila wadsworthia 3_1_6] Length = 461 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL G NAGKS+L+N +G + ++VT TTR + + + +DT G+ Sbjct: 221 VALAGPVNAGKSSLMNALLGRQRAVVTEYPGTTRDFLEEPIQLAGLPVRLVDTAGLRETD 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + I+L S I+ AD+V L+VD + LL E+ R IL+ NK D Sbjct: 281 NPAEAQGIQLGRSMIESADVVLLMVDGTEGTTPDTWALLSELGP--ERTILVWNKSDLAT 338 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 P E+ N V ++SA KG G + Sbjct: 339 PPPHWYGKEM-NLSVKPAAHAVISARKGEGLE 369 >gi|315288063|gb|EFU47463.1| ribosome-associated GTPase EngA [Escherichia coli MS 110-3] gi|324008519|gb|EGB77738.1| ribosome-associated GTPase EngA [Escherichia coli MS 57-2] Length = 499 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|190171186|gb|ACE63663.1| ThdF [Enterobacter asburiae] Length = 439 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D E I++ V +SA G G DD+ N+L Sbjct: 313 IARLPAKLPITVVRNKADVTG-----ETLGISD--VNGHSLIRLSARTGEGVDDLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|89897801|ref|YP_521288.1| hypothetical protein DSY5055 [Desulfitobacterium hafniense Y51] gi|122480417|sp|Q24M98|MNME_DESHY RecName: Full=tRNA modification GTPase mnmE gi|89337249|dbj|BAE86844.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 459 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 75/133 (56%), Gaps = 10/133 (7%) Query: 18 DNSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D S++G + +VG N GKS+L+N +G + +IVT TTR +R V+ Sbjct: 208 DGSKTGRILREGMLTVIVGQPNVGKSSLLNALMGEERAIVTDIPGTTRDEIRESVTIGGI 267 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + +DT G+ ++D KL I SW ++ A+++ L++ + +ELK + LK +++ Sbjct: 268 LLQLVDTAGLRESEDLVEKLGIERSWKAMEKAELILLIIQAGQELKA---EELKILSQYD 324 Query: 131 SRLILILNKIDCV 143 +I+++NK+D + Sbjct: 325 QSVIVLINKMDLL 337 >gi|83647146|ref|YP_435581.1| GTP-binding protein EngA [Hahella chejuensis KCTC 2396] gi|123531965|sp|Q2SDW8|DER_HAHCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|83635189|gb|ABC31156.1| predicted GTPase [Hahella chejuensis KCTC 2396] Length = 472 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 61/123 (49%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV + TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRMTRSRDAIVANLPGLTRDRKYGEGELEGKHYIVVDTGGITGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S++ + AD+V VVD+ + + KE+ R IL++NKID + Sbjct: 64 EQGIDAAMAGQSFTAMNEADVVLFVVDAQAGVTPADEMIAKELRVRGKPTILVVNKIDGM 123 Query: 144 KPE 146 +PE Sbjct: 124 QPE 126 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 10/201 (4%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F E + ++ + ++G N GKSTLVNR +G +V + TTR V Sbjct: 162 FPEQEPLEGEDDSGIRIGIIGRPNVGKSTLVNRLLGEDRVVVFDQPGTTRDSVYIPYERL 221 Query: 69 ESQIVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 + +DT G+ N ++ K I + IK A +V LV+D+ + LL Sbjct: 222 GERYTLIDTAGVRRRKNVSEAVEKFSIVKTLQAIKDAHVVVLVLDAREGIVDQDLHLLGF 281 Query: 126 IAKRSSRLILILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYL 182 + L+L +NK D + + E + EI ++ F+E + +SA G G + + Sbjct: 282 AIEAGRALVLAINKWDGMSQDDKDEVRREIDRRMGFVEYAQIHFISALHGTGVGHLYESV 341 Query: 183 --CSTLPLAPWVYSADQISDL 201 C +A W S +Q++ L Sbjct: 342 HECFDSAMAKW--STNQLTTL 360 >gi|16765839|ref|NP_461454.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412602|ref|YP_149677.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167549461|ref|ZP_02343220.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991827|ref|ZP_02572926.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168261443|ref|ZP_02683416.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466731|ref|ZP_02700585.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446079|ref|YP_002041777.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197264629|ref|ZP_03164703.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361537|ref|YP_002141173.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|238912639|ref|ZP_04656476.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|17865704|sp|Q9XCI8|DER_SALTY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81821610|sp|Q5PNI6|DER_SALPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238689919|sp|B5BAY9|DER_SALPK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238693574|sp|B4T0P5|DER_SALNS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|16421063|gb|AAL21413.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56126859|gb|AAV76365.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194404742|gb|ACF64964.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195630729|gb|EDX49321.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093013|emb|CAR58446.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197242884|gb|EDY25504.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205325405|gb|EDZ13244.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329876|gb|EDZ16640.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205349650|gb|EDZ36281.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261247715|emb|CBG25543.1| GTP-binding protein engA [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994635|gb|ACY89520.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159068|emb|CBW18582.1| GTP-binding protein engA [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913506|dbj|BAJ37480.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087014|emb|CBY96783.1| GTP-binding protein engA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222780|gb|EFX47851.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613736|gb|EFY10675.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619521|gb|EFY16397.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625026|gb|EFY21855.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629531|gb|EFY26307.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634038|gb|EFY30775.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635524|gb|EFY32235.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639800|gb|EFY36479.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644422|gb|EFY40963.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648567|gb|EFY45016.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655213|gb|EFY51522.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658260|gb|EFY54526.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664261|gb|EFY60458.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669428|gb|EFY65577.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673155|gb|EFY69261.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676547|gb|EFY72615.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683297|gb|EFY79311.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685817|gb|EFY81810.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130847|gb|ADX18277.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194760|gb|EFZ79948.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199552|gb|EFZ84643.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204673|gb|EFZ89671.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208121|gb|EFZ93066.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210155|gb|EFZ95056.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217023|gb|EGA01745.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221821|gb|EGA06225.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225000|gb|EGA09255.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229289|gb|EGA13413.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235396|gb|EGA19480.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237418|gb|EGA21481.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245172|gb|EGA29173.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248875|gb|EGA32801.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253162|gb|EGA36994.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255396|gb|EGA39164.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263529|gb|EGA47056.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266356|gb|EGA49844.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269813|gb|EGA53263.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332989446|gb|AEF08429.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 490 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 264 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|320108687|ref|YP_004184277.1| ribosome-associated GTPase EngA [Terriglobus saanensis SP1PR4] gi|319927208|gb|ADV84283.1| ribosome-associated GTPase EngA [Terriglobus saanensis SP1PR4] Length = 633 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTL NR G + SIV + TR + G + + +DT G+ Sbjct: 165 IAVCGRPNVGKSTLFNRLTGTRRSIVGDEPGITRDRIYGEIEWQSEYARIVDTGGVVPDD 224 Query: 85 DSYHKLMI-RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ I R + + AD + +VVD EL +L + + + + L +NK+D V Sbjct: 225 EALIPSEIYRQARVALDEADAIIMVVDGRTELAAPDLELARILLRSGKHIFLAVNKMDTV 284 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + AE +L F + F +SA +G D+L+ + TLP Sbjct: 285 Q---ITSDAENFRQLGFRD-VFAISAEHNNGIGDLLDAVFETLP 324 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 10/151 (6%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +S+ VA++G N GKSTL+N G SIV+ TTR V +V F+DT Sbjct: 359 DSKETKVAIIGRPNVGKSTLLNALTGTDRSIVSPIAGTTRDAVDELVERNGHGFRFVDTA 418 Query: 79 GIFNAKDS---YHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSR 132 GI + KL + ++ ++ AD+ L++D+ L NI E + Sbjct: 419 GIRRKGKTTLMAEKLSVIMARKHLEAADVGLLIIDATEGVAALDANIGGYAHESGR---S 475 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEK 163 +I+++NK D V R Q A++ + E+ Sbjct: 476 VIIVVNKWDLVTTHRTDGQPP-ADQKAYTEQ 505 >gi|260771392|ref|ZP_05880317.1| GTP-binding protein EngA [Vibrio furnissii CIP 102972] gi|260613518|gb|EEX38712.1| GTP-binding protein EngA [Vibrio furnissii CIP 102972] gi|315180972|gb|ADT87886.1| GTP-binding protein [Vibrio furnissii NCTC 11218] Length = 495 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I AD+V +VD L V + + + IL++NK+D + Sbjct: 64 EEGVETKMAAQSLAAIDEADVVLFMVDGRAGLTVADEAIANHLRRVEKNAILVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC----DDVLNYLCSTL 186 E AE + +++ F ++A G G D LN L + Sbjct: 124 DAE--TASAEFWQ--LGVDQMFQIAAAHGRGVGALIDRALNPLAEQM 166 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ K Sbjct: 209 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRRK 268 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL +++ +NK D Sbjct: 269 RINETVEKFSVVKTLKAIEDANVVLLVVDARENISDQDLSLLGFALNAGRSIVIAVNKWD 328 Query: 142 CVKP---ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + ER+ + E+ +L F++ + +SA G G Sbjct: 329 GLDTDVKERV--KKELDRRLGFVDFARIHFISALHGTGV 365 >gi|326804314|ref|YP_004322132.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a] gi|326650573|gb|AEA00756.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a] Length = 466 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 7/159 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR + V+ + + +DT G Sbjct: 226 RDGIETAIIGRPNVGKSSLLNHLLREDKAIVTDIEGTTRDTIEEYVNLRGVPLKLVDTAG 285 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S ++ AD+V L+++ L+ +LL + K S+R+IL LNK Sbjct: 286 IRDTEDVVEKIGVERSRKAMEEADLVLLILNQSEPLQAMDRELLT-MTKDSNRIIL-LNK 343 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D L + A+ A+K E+ S T+ G DD+ Sbjct: 344 TDLDPALSLDDLADYADK----EEIIKTSITQDQGVDDL 378 >gi|255020153|ref|ZP_05292222.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus caldus ATCC 51756] gi|254970295|gb|EET27788.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus caldus ATCC 51756] Length = 449 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R VAL+G N GKS+L+N G + +IVT TTR +VR + + +DT G Sbjct: 219 ARGARVALIGRPNVGKSSLLNALAGRESAIVTAIAGTTRDLVREELQIGGLTVELVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + ++ D + IR S +T+ + V LV D+ K + +L E+ S RL ++ NK Sbjct: 279 LQDSADPVEREGIRRSRATVASSQWVLLVADAAAGWKSDDARILAEL--DSQRLTIVWNK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D V +L + +VSA G G D Sbjct: 337 GDLVAKAPVLPEP---------RPQLVVSARTGAGLD 364 >gi|161612723|ref|YP_001586688.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189037158|sp|A9N205|DER_SALPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|161362087|gb|ABX65855.1| hypothetical protein SPAB_00422 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 490 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 264 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|205353618|ref|YP_002227419.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|238690507|sp|B5RCY8|DER_SALG2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|205273399|emb|CAR38374.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628718|gb|EGE35061.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 490 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 264 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCD 176 + E + E + +L FI+ + +SA HG D Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISAL--HGSD 360 >gi|32455227|gb|AAP83329.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis] Length = 490 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 264 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|207857927|ref|YP_002244578.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238690463|sp|B5R578|DER_SALEP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|206709730|emb|CAR34082.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 490 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 264 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|16761434|ref|NP_457051.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140869|ref|NP_804211.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161952|ref|ZP_03347662.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425335|ref|ZP_03358085.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213609480|ref|ZP_03369306.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213861384|ref|ZP_03385854.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289825430|ref|ZP_06544667.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|26006725|sp|Q8Z4P6|DER_SALTI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|25328266|pir||AF0821 probable GTP-binding protein STY2764 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503734|emb|CAD02722.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136494|gb|AAO68060.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 490 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 264 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|110642676|ref|YP_670406.1| GTP-binding protein EngA [Escherichia coli 536] gi|161486155|ref|NP_754915.2| GTP-binding protein EngA [Escherichia coli CFT073] gi|191172582|ref|ZP_03034121.1| ribosome-associated GTPase EngA [Escherichia coli F11] gi|218701021|ref|YP_002408650.1| GTP-binding protein EngA [Escherichia coli IAI39] gi|312965427|ref|ZP_07779659.1| small GTP-binding domain protein [Escherichia coli 2362-75] gi|31563151|sp|Q8FF59|DER_ECOL6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123147831|sp|Q0TEX4|DER_ECOL5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741137|sp|B7NQW0|DER_ECO7I RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110344268|gb|ABG70505.1| probable GTP-binding protein EngA [Escherichia coli 536] gi|190907055|gb|EDV66655.1| ribosome-associated GTPase EngA [Escherichia coli F11] gi|218371007|emb|CAR18835.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli IAI39] gi|281179565|dbj|BAI55895.1| putative GTP-binding protein [Escherichia coli SE15] gi|307554534|gb|ADN47309.1| GTP-binding protein EngA [Escherichia coli ABU 83972] gi|312289847|gb|EFR17735.1| small GTP-binding domain protein [Escherichia coli 2362-75] gi|320196348|gb|EFW70972.1| GTP-binding protein EngA [Escherichia coli WV_060327] gi|323188371|gb|EFZ73663.1| small GTP-binding domain protein [Escherichia coli RN587/1] gi|330912286|gb|EGH40796.1| GTP-binding protein EngA [Escherichia coli AA86] Length = 490 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|315300482|gb|EFU59711.1| ribosome-associated GTPase EngA [Escherichia coli MS 16-3] Length = 499 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRESIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|170288479|ref|YP_001738717.1| tRNA modification GTPase TrmE [Thermotoga sp. RQ2] gi|205829186|sp|B1L9N6|MNME_THESQ RecName: Full=tRNA modification GTPase mnmE gi|170175982|gb|ACB09034.1| tRNA modification GTPase TrmE [Thermotoga sp. RQ2] Length = 450 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 18/164 (10%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS------IVRGIVSEKESQIV 73 +R + +VG N GKSTL+NR + +IVT TTR ++RGI+ Sbjct: 209 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL------FR 262 Query: 74 FLDTPGIFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DT G+ + D +L I + I+ ADIV V+D+ L +L+ I ++ R Sbjct: 263 IVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR 320 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 ++++NK+D V+ + + EI NKL +SA KG G + Sbjct: 321 YLVVINKVDVVEK---INEEEIKNKLGTDRHMVKISALKGEGLE 361 >gi|62181086|ref|YP_217503.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582944|ref|YP_002636742.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|81309623|sp|Q57LJ0|DER_SALCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783165|sp|C0PYN4|DER_SALPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|62128719|gb|AAX66422.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224467471|gb|ACN45301.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715573|gb|EFZ07144.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 490 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 264 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|331648208|ref|ZP_08349298.1| ribosome-associated GTPase EngA [Escherichia coli M605] gi|26109281|gb|AAN81483.1|AE016764_165 Probable GTP-binding protein engA [Escherichia coli CFT073] gi|331043068|gb|EGI15208.1| ribosome-associated GTPase EngA [Escherichia coli M605] Length = 503 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 17 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 76 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 77 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 136 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 137 DP----DQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 176 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 218 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 277 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 278 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 337 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 338 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 378 >gi|226326138|ref|ZP_03801656.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758] gi|225205680|gb|EEG88034.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758] Length = 459 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N VG + +IVT TTR ++ + + + +DT GI + D Sbjct: 227 IVGKPNAGKSSLMNVLVGEEKAIVTEIAGTTRDVLEENIQLQGVSLNIMDTAGIRDTSDI 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + AD++ VVD+ R L N H++++ I R + +++LNK D Sbjct: 287 VEKIGVDKAKENAEKADLIIYVVDASRPLDENDHEIIEMI--RDKKAVILLNKSD 339 >gi|227887546|ref|ZP_04005351.1| GTP-binding protein [Escherichia coli 83972] gi|300981973|ref|ZP_07175819.1| ribosome-associated GTPase EngA [Escherichia coli MS 45-1] gi|300998067|ref|ZP_07181927.1| ribosome-associated GTPase EngA [Escherichia coli MS 200-1] gi|301047143|ref|ZP_07194239.1| ribosome-associated GTPase EngA [Escherichia coli MS 185-1] gi|227835896|gb|EEJ46362.1| GTP-binding protein [Escherichia coli 83972] gi|300300945|gb|EFJ57330.1| ribosome-associated GTPase EngA [Escherichia coli MS 185-1] gi|300304046|gb|EFJ58566.1| ribosome-associated GTPase EngA [Escherichia coli MS 200-1] gi|300408868|gb|EFJ92406.1| ribosome-associated GTPase EngA [Escherichia coli MS 45-1] gi|315292449|gb|EFU51801.1| ribosome-associated GTPase EngA [Escherichia coli MS 153-1] gi|324011217|gb|EGB80436.1| ribosome-associated GTPase EngA [Escherichia coli MS 60-1] Length = 499 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|190171240|gb|ACE63690.1| ThdF [Enterobacter sp. KM877_04] Length = 439 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIELADRVLFMVDGTTTDAVDPADIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ +SA G G DD+ N+L Sbjct: 313 IARLPAKLPITVVRNKADVTG--ETLGISEVNG-----HSLIRLSARTGEGVDDLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|215487861|ref|YP_002330292.1| GTP-binding protein EngA [Escherichia coli O127:H6 str. E2348/69] gi|254783152|sp|B7UGV7|DER_ECO27 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|215265933|emb|CAS10342.1| predicted GTP-binding protein [Escherichia coli O127:H6 str. E2348/69] Length = 490 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|325685111|gb|EGD27242.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 461 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 6/136 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLKTAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I AD++ L++D +EL LL+ A + + I++LNK Sbjct: 282 IHHTEDQVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRRLLELTAGK--KRIIVLNK 339 Query: 140 IDCVKPERLLEQAEIA 155 +D + L AEIA Sbjct: 340 MDLGQK---LTAAEIA 352 >gi|260581920|ref|ZP_05849716.1| tRNA modification GTPase TrmE [Haemophilus influenzae NT127] gi|260095113|gb|EEW79005.1| tRNA modification GTPase TrmE [Haemophilus influenzae NT127] Length = 452 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS VN+ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESVNLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|239907769|ref|YP_002954510.1| GTP-binding protein EngA [Desulfovibrio magneticus RS-1] gi|259645872|sp|C4XIQ6|DER_DESMR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239797635|dbj|BAH76624.1| GTP-binding protein EngA [Desulfovibrio magneticus RS-1] Length = 444 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS+L+N VG IV+ TTR V +V +K + +F+DT G+ Sbjct: 182 LAVLGRPNAGKSSLINALVGESRLIVSDIAGTTRDAVDVVVHQKGKRYLFVDTAGVRKRT 241 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + + + S+ K AD+ +V+D+ + V L+ + ++ +NK D Sbjct: 242 RITDGLERYSVAKALSSAKRADVAVVVIDATGGVGVQDKRLISFLDSERKAFLVAVNKTD 301 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V + +L Q +IA +L +SA KG G VL Sbjct: 302 LVPQKDMLALQKDIARELRMCSHVPVLYMSAAKGKGVAKVL 342 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 6/169 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL NR + +I TR + + + +DT G+ + A Sbjct: 5 VAIVGRPNVGKSTLFNRLTRGRRAITHDLPGVTRDRLEAPAEIEGRFVTLVDTGGMDYEA 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++S + ++ + + + AD+V +VD DL + + + +I+ +NK+D + Sbjct: 65 EESLARQIVEQAEAALVTADVVLFLVDGKAGRTALEDDLAERLRRLGKPVIVAVNKVDGL 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA-PW 191 ER+ A A+ + +SA G G ++ + LP A P+ Sbjct: 125 --ERV--AAMTADFHAWGLPLLAISAAHGQGMAELAEAIAERLPEAEPY 169 >gi|119953297|ref|YP_945506.1| GTP-binding protein EngA [Borrelia turicatae 91E135] gi|119862068|gb|AAX17836.1| GTP-binding protein [Borrelia turicatae 91E135] Length = 438 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 86/163 (52%), Gaps = 5/163 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V +VG N GKSTL N+ + + SI TR +++ I + + +D G Sbjct: 11 SVLIVGRPNVGKSTLFNKLLSSNRSITDEIYGVTRDLIKEICTVDSYKFYLIDAGGFTLL 70 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D ++++ S + D++ V+D + L + ++L++ + K S +++L+LNKID Sbjct: 71 RDELSRVVVNKVISLLDSIDLILFVLDVNEILSED-YELIERLRKYSDKIVLVLNKIDSH 129 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + L + + L F +K+F+VSAT G G + + +L +++ Sbjct: 130 HKQALTYEFQ---NLGF-QKSFLVSATHGKGVNSLRIFLKNSV 168 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 12/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L+G N+GKSTL+N G +VSIV+ TTR V+ +DT GI + Sbjct: 181 IGLIGKPNSGKSTLINFLAGREVSIVSRVAGTTRDFVKARFQRNGKTFELIDTAGI-RRR 239 Query: 85 DSYHKLMIRLSWS----TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++L+ S S I DIV L+VD +L + KR +I++ K Sbjct: 240 ARVNELIEHYSVSRALRVIDMVDIVFLLVDVKEDLTAQDKKIAHYATKRGKGIIIVFTKW 299 Query: 141 DCVKPERLLEQAEIANKLVF------IEKTFMVSATKGHGCDDVL 179 D VK + +A + N++ F +SA + G D++ Sbjct: 300 DLVKSKSGYFEA-LKNRVKFFFPILNFSPILRISAHRREGVDNLF 343 >gi|30248403|ref|NP_840473.1| tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718] gi|46577435|sp|Q82XA1|MNME_NITEU RecName: Full=tRNA modification GTPase mnmE gi|30138289|emb|CAD84297.1| GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718] Length = 451 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+NR G +V+IVT TTR VR + + + +DT G+ Sbjct: 218 VVLAGQPNVGKSSLLNRLAGDEVAIVTDIPGTTRDTVRQSIEIEGIPLHLIDTAGLRETS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID-CV 143 D + I +++ I+ AD+V L+VDS + +L + +R ++ + NKID Sbjct: 278 DIVEQHGIARTYAAIEQADLVLLLVDSRHGVTEEDRSVLTRLPERLP-VLTVHNKIDLSA 336 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +P RL E T +SA G G + + L T A W Sbjct: 337 QPPRLEENTS--------GPTIYLSAINGEGIELLRAALLKT---AGW 373 >gi|148269793|ref|YP_001244253.1| tRNA modification GTPase TrmE [Thermotoga petrophila RKU-1] gi|205829183|sp|A5IKF4|MNME_THEP1 RecName: Full=tRNA modification GTPase mnmE gi|147735337|gb|ABQ46677.1| tRNA modification GTPase trmE [Thermotoga petrophila RKU-1] Length = 450 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 18/164 (10%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS------IVRGIVSEKESQIV 73 +R + +VG N GKSTL+NR + +IVT TTR ++RGI+ Sbjct: 209 NRGFRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL------FR 262 Query: 74 FLDTPGIFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DT G+ + D +L I + I+ ADIV V+D+ L +L+ I ++ R Sbjct: 263 IVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR 320 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 ++++NK+D V+ + + EI NKL +SA KG G + Sbjct: 321 YLVVINKVDVVEK---INEEEIKNKLGTDRHMVKISALKGEGLE 361 >gi|85712733|ref|ZP_01043778.1| GTP-binding protein EngA [Idiomarina baltica OS145] gi|85693465|gb|EAQ31418.1| GTP-binding protein EngA [Idiomarina baltica OS145] Length = 479 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + Q + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYQFIVVDTGGIHGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ ++M + S I+ AD+V +VD+ + V + + K+ ++ L+ NKID + Sbjct: 64 EEGIDEVMAKQSLQAIEEADVVLFLVDARDGVTVGDQAIATHLRKQKKKVYLVANKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + + A+ + + + + ++A G G + +L+ Sbjct: 124 DADSAM--ADFYS--LALGNLYGIAAAHGRGVEHLLD 156 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G +V TTR V + + V +DT G+ Sbjct: 194 LAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSVYIPMERDGREYVLIDTAGVRRRG 253 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V V+D+ + +L+ +++ +NK D Sbjct: 254 RIDEAIEKYSVVKTLQAIEDANVVLAVIDARETISDQDLNLIGFALNAGRSIVIAVNKWD 313 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGC 175 ++ + E + E+ +L F++ + +SA G G Sbjct: 314 GLQQDHKDEIKRELDRRLGFVDFARLHFISALHGTGV 350 >gi|325663376|ref|ZP_08151826.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 4_1_37FAA] gi|325470830|gb|EGC74060.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 4_1_37FAA] Length = 400 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 9/153 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N G + +IVT TTR I+ + + +DT GI + +D Sbjct: 168 IVGKPNAGKSSLLNVLAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTAGIRDTEDI 227 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + + K AD+V VVD+ R L N +L+ I ++ + ++L + +D V + Sbjct: 228 VEKIGVDKAKDYAKDADLVIYVVDASRALDENDEQILEMIREKQALILLNKSDLDTVITK 287 Query: 147 RLLEQAEIANKLVFIEKTFM-VSATKGHGCDDV 178 LL++ + EK + +SA + HG + V Sbjct: 288 ELLQK--------YTEKPMIEISAKQEHGIEKV 312 >gi|207110133|ref|ZP_03244295.1| GTP-binding protein Era [Helicobacter pylori HPKX_438_CA4C1] Length = 90 Score = 65.9 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 5/70 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-----ESQIVF 74 +++G VAL+G NAGKSTL+N + A +++V+HK TR +++ IV K ESQI+F Sbjct: 3 TKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKNKEGYESQIIF 62 Query: 75 LDTPGIFNAK 84 LDTPG+ + + Sbjct: 63 LDTPGLHHQR 72 >gi|15643037|ref|NP_228080.1| tRNA modification GTPase TrmE [Thermotoga maritima MSB8] gi|14195303|sp|Q9WYA4|MNME_THEMA RecName: Full=tRNA modification GTPase mnmE gi|4980765|gb|AAD35356.1|AE001709_2 thiophene oxidation protein ThdF-related GTPase [Thermotoga maritima MSB8] Length = 450 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 18/164 (10%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS------IVRGIVSEKESQIV 73 +R + +VG N GKSTL+NR + +IVT TTR ++RGI+ Sbjct: 209 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL------FR 262 Query: 74 FLDTPGIFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DT G+ + D +L I + I+ ADIV V+D+ L +L+ I ++ R Sbjct: 263 IVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR 320 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 ++++NK+D V+ + + EI NKL +SA KG G + Sbjct: 321 YLVVINKVDVVEK---INEEEIKNKLGTDRHMVKISALKGEGLE 361 >gi|218263821|ref|ZP_03477797.1| hypothetical protein PRABACTJOHN_03487 [Parabacteroides johnsonii DSM 18315] gi|218222494|gb|EEC95144.1| hypothetical protein PRABACTJOHN_03487 [Parabacteroides johnsonii DSM 18315] Length = 460 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 9/176 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR I+ VS F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDIIEDTVSLGGITFRFIDTAGIRETH 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRLILILNKIDC 142 D+ + I ++ + ADIV ++D+ + + I L ++I RS +LIL+ NK D Sbjct: 284 DAIESIGIERTFQKLDQADIVLWMIDA-ADASLQIAQLSEKILPRSKGKQLILVFNKADL 342 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + +R + ++ + + ++ +SA K D++ + L + P + S D I Sbjct: 343 L-TDRQFKTTDLPDNV----QSIFISAKKREHIDELQDLLIQAAHI-PSLSSNDVI 392 >gi|61679425|pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima gi|61679427|pdb|1XZQ|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Complexed With 5-Formyl-Thf Length = 482 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 18/164 (10%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS------IVRGIVSEKESQIV 73 +R + +VG N GKSTL+NR + +IVT TTR ++RGI+ Sbjct: 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL------FR 294 Query: 74 FLDTPGIFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DT G+ + D +L I + I+ ADIV V+D+ L +L+ I ++ R Sbjct: 295 IVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR 352 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 ++++NK+D V+ + + EI NKL +SA KG G + Sbjct: 353 YLVVINKVDVVEK---INEEEIKNKLGTDRHMVKISALKGEGLE 393 >gi|213418595|ref|ZP_03351661.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 320 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 D+ K + + I+ A++V LV+D+ + LL I L++++ Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVV 320 >gi|297517161|ref|ZP_06935547.1| GTP-binding protein EngA [Escherichia coli OP50] Length = 202 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 >gi|237654729|ref|YP_002891043.1| tRNA modification GTPase TrmE [Thauera sp. MZ1T] gi|237625976|gb|ACR02666.1| tRNA modification GTPase TrmE [Thauera sp. MZ1T] Length = 448 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 23/197 (11%) Query: 3 MGEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ 55 M + E + V D +R G V LVGA N GKS+L+N+ G + +IVT Sbjct: 194 MPRLESIREALEGVLDRARQGALLRSGLDVVLVGAPNVGKSSLLNQLAGEERAIVTDIAG 253 Query: 56 TTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL 115 TTR +R + + + +DT G+ +D ++ I +W I AD++ +V++ Sbjct: 254 TTRDALRETIQVEGIPLHIIDTAGLRETEDRVERIGIERTWREIARADVILHLVEAGVAA 313 Query: 116 KVNIHDLLKEIAKRSSRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + ++ + L + +R I++ NKID P +E A V ++ VSA G G Sbjct: 314 EGDLDERLPQGVER----IMVANKIDLAGLPAGRVE----AGGRVRLQ----VSARSGEG 361 Query: 175 CDDVLNYLCSTLPLAPW 191 + V L L +A W Sbjct: 362 VELVRQEL---LRIAGW 375 >gi|254302386|ref|ZP_04969744.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322578|gb|EDK87828.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 455 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 15/158 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D+ RE+ I+D++ + ++I ILNKID Sbjct: 283 IVENIGVEKSKELINSADLILYVIDTSREIDEEDYRIYDII-----NTDKVIGILNKID- 336 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 ++Q +K IEK +SA G D++ N Sbjct: 337 ------IKQDIDLSKFPKIEKWIEISALSKIGIDNLEN 368 >gi|262202714|ref|YP_003273922.1| ribosome-associated GTPase EngA [Gordonia bronchialis DSM 43247] gi|262086061|gb|ACY22029.1| ribosome-associated GTPase EngA [Gordonia bronchialis DSM 43247] Length = 478 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 10/190 (5%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+G+ F D D +A+VG N GKSTLVNR +G + ++V TR V Sbjct: 25 ELGQADGF----DGAADVEHMPVLAIVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRV 80 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 S + +DT G + + + ++ AD + LVVD+ Sbjct: 81 SYAASWSGRRFTVVDTGGWEPDAKGLQQAVAAQAELAMRTADAIVLVVDATVGATATDEA 140 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLN 180 + + + + + +IL NK+D ERL +AE A+ + + F VSA G G D+L+ Sbjct: 141 VARVLRRSKTPVILAANKVDS---ERL--EAEAASLWSLGLGEPFTVSAAHGRGAGDLLD 195 Query: 181 YLCSTLPLAP 190 + LP P Sbjct: 196 VILEKLPETP 205 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 12/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ GA+ S+V + TT V ++ F+DT G+ Sbjct: 217 VALVGKPNVGKSSLLNKLAGAERSVVDNVAGTTVDPVDELIELDGKTWQFVDTAGLRRKV 276 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + Y L R + + A++ L++D+ + +L I LI+ N Sbjct: 277 RTASGHEYYASLRTR---AALDAAEVAILLIDASEPITEQDLRVLSLIIDSGRALIIAFN 333 Query: 139 KIDCVKPERLLE-QAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTL 186 K D V +R + EI +L + +SA+ G ++ L S L Sbjct: 334 KWDLVDEDRRYQLDKEIDRELARVPWASRVNISASTGRAVHKLVPALESAL 384 >gi|73749080|ref|YP_308319.1| GTP-binding protein EngA [Dehalococcoides sp. CBDB1] gi|73660796|emb|CAI83403.1| GTP-binding protein EngA [Dehalococcoides sp. CBDB1] Length = 442 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 7/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+ + +A+VG N GKSTL+NR ++I TTR + VS + +++ +DT Sbjct: 3 NTTTPIIAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTG 62 Query: 79 GIFNAKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 G+ +S ++ I++S + IK AD+V LVVD L +++ I + +IL+ Sbjct: 63 GLDPDIESVIGQQVNIQISLA-IKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILV 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK D +K + ++A L F E ++SA G G D+++ + LP P Sbjct: 122 ANKADNLK---MGQEATEFYSLGFGEPA-VISAFHGTGISDLMDRVLEELPDQP 171 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +ALVG TN GKSTL+N F+G + SIV++ TTR + + + ++ +DT GI Sbjct: 183 LALVGRTNVGKSTLLNTFLGEERSIVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRRRG 242 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I AD+V LV+D+ + + + + +I+ILNK D Sbjct: 243 KVESGVEKYSVLRALKAIDRADVVLLVMDTEELVTAQDTHIAGYVRDTAKGIIIILNKWD 302 Query: 142 CVKPERLLEQAE-IANKLVFIEKT--FMVSATKGHGCDDVL 179 K + E + I ++ F++ VS G G D ++ Sbjct: 303 LGKGQDKAEVTQTIQSRFKFLDYAPILFVSGKTGRGVDAII 343 >gi|291556568|emb|CBL33685.1| tRNA modification GTPase TrmE [Eubacterium siraeum V10Sc8a] Length = 457 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 9/159 (5%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG NAGKSTL+NR G + SIVT TTR IV V + + D G Sbjct: 220 RNGIATAIVGKPNAGKSTLMNRLTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D+ + ++ I A ++ V D REL + L++ + ++ +I I+NK Sbjct: 280 IRETEDTVENIGVQRMIERIGTAQLILAVFDGSRELSDDDKRLIELLHGKT--VIPIINK 337 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D E + A I N+L K ++SA G G D++ Sbjct: 338 SDL---EARADTAFIENEL---GKAVIISAKTGGGADEL 370 >gi|104774816|ref|YP_619796.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514945|ref|YP_813851.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274323|sp|Q047F9|MNME_LACDB RecName: Full=tRNA modification GTPase mnmE gi|123077174|sp|Q1G7Z4|MNME_LACDA RecName: Full=tRNA modification GTPase mnmE gi|103423897|emb|CAI98939.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094260|gb|ABJ59413.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126645|gb|ADY85975.1| Thiophene and furan oxidation protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 461 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 6/136 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLKTAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I AD++ L++D +EL LL+ A + + I++LNK Sbjct: 282 IHHTEDQVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRQLLELTAGK--KRIIVLNK 339 Query: 140 IDCVKPERLLEQAEIA 155 D + L AEIA Sbjct: 340 TDLGQK---LTAAEIA 352 >gi|113474219|ref|YP_720280.1| GTP-binding protein EngA [Trichodesmium erythraeum IMS101] gi|123161345|sp|Q119L7|DER_TRIEI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110165267|gb|ABG49807.1| small GTP-binding protein [Trichodesmium erythraeum IMS101] Length = 453 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 19/187 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 GEIT N+ K +A+VG N GKS+L+N F+G K +IV+ TTR + Sbjct: 169 GEITETNQTK-----------IAIVGRPNVGKSSLLNSFIGEKRAIVSPISGTTRDAIDT 217 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 +V +DT GI K+ + I ++ I+ A++V V+D+ + Sbjct: 218 VVERNGKTYRLIDTAGIRKKKNVEYGAEFFGINRAFKAIRRAEVVMFVIDALDGVTEQDQ 277 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPER---LLEQAEIANKLVFIE--KTFMVSATKGHGC 175 L I + ++++NK D ++ + + E+ ++L F+E + VSA G Sbjct: 278 KLANRIIEDGRACVIVVNKWDAIEKDNYTIYTYEQEVRSRLYFVEWAEMIFVSALTGKRV 337 Query: 176 DDVLNYL 182 + ++N + Sbjct: 338 EKIINLI 344 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPG-IF 81 VA++G N GKST+VNR +K +IV + T R+ ++E Q+V DT G +F Sbjct: 6 VAIIGRPNVGKSTIVNRLAESKDAIVHDEPGITRDRTYRNAYWEDREFQVV--DTGGLVF 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + L+ + + + A + VVD L ++ + + +++ ++L +NK Sbjct: 64 DDNTEFLPLIREQAMAALVEASVAIFVVDGQTGLTGGDEEIAQWLRQQTIPILLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C L QA + +L E + +S G+G ++L+ L + LP Sbjct: 122 CESITEGLTQAAMFWELGLGEP-YPISGIHGNGTGELLDDLITYLP 166 >gi|331658656|ref|ZP_08359600.1| ribosome-associated GTPase EngA [Escherichia coli TA206] gi|331054321|gb|EGI26348.1| ribosome-associated GTPase EngA [Escherichia coli TA206] Length = 396 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 17 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 76 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 77 EDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTFLVANKTDGL 136 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 137 DP----DQAVVDFYALGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 176 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 11/177 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 218 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 277 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 278 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 337 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCSTLPLAP 190 + E + E + +L FI+ + +SA G G ++ Y ST+ P Sbjct: 338 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTVVWGP 394 >gi|306821555|ref|ZP_07455153.1| tRNA modification GTPase TrmE [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550300|gb|EFM38293.1| tRNA modification GTPase TrmE [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 457 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L+N + +IVT TTR I+ +S + +DT GI Sbjct: 221 SIAIIGRPNVGKSSLLNELLEENRAIVTDIAGTTRDIITESLSINGISVNLIDTAGIRET 280 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D K+ + S S+I++ADI+ LV+D+ +L +L++++ R +++LNK D Sbjct: 281 QDVVEKIGVERSMSSIENADIILLVLDTSDKLNAEDKELMEKL--RDRHYLILLNKSD 336 >gi|281412323|ref|YP_003346402.1| tRNA modification GTPase TrmE [Thermotoga naphthophila RKU-10] gi|281373426|gb|ADA66988.1| tRNA modification GTPase TrmE [Thermotoga naphthophila RKU-10] Length = 450 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 6/158 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R + +VG N GKSTL+NR + +IVT TTR ++ + K +DT G Sbjct: 209 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIKGILFRIVDTAG 268 Query: 80 IFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + D +L I + ++ ADIV V+D+ L +L+ I ++ R ++++N Sbjct: 269 VRSETNDLVERLGIERTLQEVEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVIN 326 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 K+D V+ + + EI NKL +SA KG G + Sbjct: 327 KVDVVEK---INEEEIKNKLGTDRHMVKISALKGEGLE 361 >gi|34558325|ref|NP_908140.1| GTP-binding protein EngA [Wolinella succinogenes DSM 1740] gi|41016995|sp|Q7M7W8|DER_WOLSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|34484044|emb|CAE11040.1| PUTATIVE GTP-BINDING PROTEIN [Wolinella succinogenes] Length = 470 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 6/154 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ + ++++ +DT GI Sbjct: 3 TIAIIGKPNVGKSSLFNRLAKERIAITSDVSGTTRDIKKQVIEIEGNEVLLVDTGGIELK 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + L+ K AD+V +VD + + L + + + + L L++NKID Sbjct: 63 ETGLFGKVRELALRAAKEADVVLYMVDGKMRPQDDDISLFRALHRENEHLFLVVNKIDND 122 Query: 144 KP-ERLLEQAEI-ANKLVFIEKTFMVSATKGHGC 175 K ER E AE A KL+FI VS +G G Sbjct: 123 KEKERGWEFAEFGAEKLLFIS----VSHNRGVGA 152 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 10/156 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N +G++ S+V+ TT V + + +++F+DT GI Sbjct: 203 VGIIGKVNVGKSSLLNALLGSERSVVSDVAGTTIDPVDESMEIEGQKVLFVDTAGIRRRG 262 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILN 138 + K + + ++ ADI LV+D + DL ++I K S +I++LN Sbjct: 263 KIEGIEKYALDRTQKALEKADIALLVLDC----SLPFADLDEKIGGLVDKFSLGVIVVLN 318 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 K D E + E+ ++ ++E +V+ + +G Sbjct: 319 KWDIRSREFKEVEKEVRHRFKYLEHAPLVTVSAQNG 354 >gi|313890071|ref|ZP_07823706.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN 20026] gi|313121432|gb|EFR44536.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN 20026] Length = 458 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S +K AD+V LV+++ L LL E+++ ++RLIL LNK Sbjct: 282 IRETDDLVEKIGVERSKKVLKEADLVLLVLNASEPLTTQ-DRLLLELSQETNRLIL-LNK 339 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE+ +E ++ + LV I Sbjct: 340 TDL--PEK-IETDQLPSDLVPI 358 >gi|147669843|ref|YP_001214661.1| GTP-binding protein EngA [Dehalococcoides sp. BAV1] gi|146270791|gb|ABQ17783.1| small GTP-binding protein [Dehalococcoides sp. BAV1] Length = 442 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 7/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+ + +A+VG N GKSTL+NR ++I TTR + VS + +++ +DT Sbjct: 3 NTTTPIIAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTG 62 Query: 79 GIFNAKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 G+ +S ++ I++S + IK AD+V LVVD L +++ I + +IL+ Sbjct: 63 GLDPDIESVIGQQVNIQISLA-IKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILV 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK D +K + ++A L F E ++SA G G D+++ + LP P Sbjct: 122 ANKADNLK---MGQEATEFYSLGFGEPA-VISAFHGTGISDLMDRVLEELPDQP 171 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +ALVG TN GKSTL+N F+G SIV++ TTR + + + ++ +DT GI Sbjct: 183 LALVGRTNVGKSTLLNTFLGEDRSIVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRRRG 242 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I AD+V LV+D+ + + + + +I+ILNK D Sbjct: 243 KVESGVEKYSVLRALKAIDRADVVLLVMDTEELVTAQDTHIAGYVRDTAKGIIIILNKWD 302 Query: 142 CVKPERLLEQAE-IANKLVFIEKT--FMVSATKGHGCDDVL 179 K + E + I ++ F++ VS G G D ++ Sbjct: 303 LGKGQDKAEVTQTIQSRFKFLDYAPILFVSGKTGRGVDTII 343 >gi|228477467|ref|ZP_04062103.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126] gi|228250902|gb|EEK10090.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126] Length = 456 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 220 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L LL EI+K S+R+IL LNK Sbjct: 280 IRDTDDVVEKIGVERSKKALEEADLVLLVLNSSEPLTEQDRTLL-EISKNSNRIIL-LNK 337 Query: 140 IDC 142 D Sbjct: 338 TDL 340 >gi|300362683|ref|ZP_07058859.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03] gi|300353674|gb|EFJ69546.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03] Length = 461 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S IK AD+V L++D+ ++L LL A + + I+ILNK Sbjct: 282 IHHTEDKVEKIGVERSKKAIKEADLVLLILDASQDLTAEDKRLLDLTANK--KRIIILNK 339 Query: 140 IDC 142 D Sbjct: 340 QDL 342 >gi|94986202|ref|YP_605566.1| GTP-binding protein EngA [Deinococcus geothermalis DSM 11300] gi|166198711|sp|Q1IWI7|DER_DEIGD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94556483|gb|ABF46397.1| Small GTP-binding protein domain [Deinococcus geothermalis DSM 11300] Length = 441 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L NR VG + ++V TR G++ +IV +DT G+++ Sbjct: 4 VAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGLMLYHNHRIVLVDTGGLWSGD 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + W+ ++ A V VVD L +++ + + +I+ NKID K Sbjct: 64 EWEQAIREKAEWA-MEGAQAVIFVVDPREGLTAADYEVADWLRRLGKPVIVAANKIDSPK 122 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L AE+ L F + +SA G DD++ + + LP Sbjct: 123 HDVYL--AELWG-LGFGDPV-AISAEHARGLDDLMERVMAHLP 161 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 11/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++L+G N GKS+L+N ++ +IV + TTR + + + V +DT GI Sbjct: 175 ISLIGRPNVGKSSLLNAITQSERAIVADQPGTTRDSLDVEWNYGGQRFVLVDTAGIRKKP 234 Query: 85 DSY-HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNKID 141 D+ + I+ S + I+ +DI+ LVV++ ++ H+L L +A S + +I+++NK D Sbjct: 235 DTAIEEYAIQRSEAAIERSDIIWLVVNA---TEIGDHELKLANLAYDSGKPVIVVVNKWD 291 Query: 142 CVKPERLLEQA--EIANKLVFIEKTFMV--SATKGHGCDDVL 179 V P+ L+Q E+ KL I V SA +G D+L Sbjct: 292 LV-PDEALKQTEKELNQKLHHIAYAPRVYTSAINDYGIHDML 332 >gi|289433056|ref|YP_003462929.1| ribosome-associated GTPase EngA [Dehalococcoides sp. GT] gi|288946776|gb|ADC74473.1| ribosome-associated GTPase EngA [Dehalococcoides sp. GT] Length = 442 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 7/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+ + +A+VG N GKSTL+NR ++I TTR + VS + +++ +DT Sbjct: 3 NTTTPIIAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTG 62 Query: 79 GIFNAKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 G+ +S ++ I++S + IK AD+V LVVD L +++ I + +IL+ Sbjct: 63 GLDPDIESVIGQQVNIQISLA-IKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILV 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK D +K + ++A L F E ++SA G G D+++ + LP P Sbjct: 122 ANKADNLK---MGQEATEFYSLGFGEPA-VISAFHGTGISDLMDRVLEELPDQP 171 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +ALVG TN GKSTL+N F+G + S+V++ TTR + + + ++ +DT GI Sbjct: 183 LALVGRTNVGKSTLLNTFLGEERSVVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRRRG 242 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I AD+V LV+D+ + + + + +I+ILNK D Sbjct: 243 KVESGVEKYSVLRALKAIDRADVVLLVMDTEELVTAQDTHIAGYVRDTAKGIIIILNKWD 302 Query: 142 CVKPERLLEQAE-IANKLVFIEKT--FMVSATKGHGCDDVL 179 K + E + I ++ F++ VS G G D ++ Sbjct: 303 LGKGQDKAEVTQTIQSRFKFLDYAPILFVSGKTGRGVDTII 343 >gi|172062136|ref|YP_001809788.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6] gi|205829123|sp|B1YQJ5|MNME_BURA4 RecName: Full=tRNA modification GTPase mnmE gi|171994653|gb|ACB65572.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6] Length = 464 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 15/202 (7%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D ++ I +WS I+ AD+V ++DS + Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSEIERADVVLHLLDSRTGMT 320 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +++ ++ +LNK D +E A L + +SA +G G D Sbjct: 321 AD-DEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAGDLTEVH----LSAKRGDGID 375 Query: 177 DVLNYLCSTLPLAPWVYSADQI 198 + L L +A W A+ + Sbjct: 376 MLRAEL---LRIAGWQAGAEGV 394 >gi|167750134|ref|ZP_02422261.1| hypothetical protein EUBSIR_01103 [Eubacterium siraeum DSM 15702] gi|167656877|gb|EDS01007.1| hypothetical protein EUBSIR_01103 [Eubacterium siraeum DSM 15702] Length = 457 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 9/159 (5%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG NAGKSTL+NR G + SIVT TTR IV V + + D G Sbjct: 220 RNGIATAIVGKPNAGKSTLMNRLTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D+ + ++ I A ++ V D REL + L++ + ++ +I I+NK Sbjct: 280 IRETEDTVENIGVQRMIERIGTAQLILAVFDGSRELSDDDKRLIELLHGKT--VIPIINK 337 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D E + A I N+L K ++SA G G D++ Sbjct: 338 SDL---EARADTAFIENEL---GKAVIISAKTGGGADEL 370 >gi|161833759|ref|YP_001597955.1| GTP-binding protein EngA [Candidatus Sulcia muelleri GWSS] gi|293977869|ref|YP_003543299.1| ribosome-associated GTPase EngA [Candidatus Sulcia muelleri DMIN] gi|229807527|sp|A8Z608|DER_SULMW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152206249|gb|ABS30559.1| GTP-binding protein EngA [Candidatus Sulcia muelleri GWSS] gi|292667800|gb|ADE35435.1| ribosome-associated GTPase EngA [Candidatus Sulcia muelleri DMIN] Length = 433 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 13/177 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 V++VG N GKSTL NR +G K SIV K TR G + + +DT G N + Sbjct: 5 VSIVGRPNVGKSTLFNRIIGYKKSIVNSKSGITRDRNYGFCNWNGIEFCLIDTGGYTNES 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K+ + K + + +D++ +VD ++ +D+ K I K + L++NKID Sbjct: 65 KNIFDKKICEQFLFALAESDVILFLVDPSNDILGIDYDISKRIRKLKKSIYLVINKIDIY 124 Query: 144 KPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K I N + I KT+ +S+ G G + +L+ + S +Y + Sbjct: 125 K--------NIYNTYKYCKFGITKTYCISSINGTGTEKLLDSIVSNFDKNIKIYKKN 173 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A+VG N GKSTL+N + +IVT+ TTR + + S+ + + +DT GI Sbjct: 177 IAIVGRPNVGKSTLINTLLNKNKNIVTNISGTTRDSIDVLYSKFGIECILVDTAGIRKKK 236 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N K+ + + +I+++D+ L++DS + ++ K I + ++L++NK D Sbjct: 237 NIKEDIEFYSVMRAIKSIQNSDVSLLIIDSKSGFESQDINIFKIIENNNKGIVLLINKWD 296 Query: 142 CVKPERLLEQAE 153 L+ E Sbjct: 297 IFNNNYLINSYE 308 >gi|218548052|ref|YP_002381843.1| GTP-binding protein EngA [Escherichia fergusonii ATCC 35469] gi|331684159|ref|ZP_08384755.1| ribosome-associated GTPase EngA [Escherichia coli H299] gi|226741141|sp|B7LKC7|DER_ESCF3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218355593|emb|CAQ88204.1| GTPase involved in ribosome synthesis and maintenance [Escherichia fergusonii ATCC 35469] gi|323967959|gb|EGB63371.1| ribosome GTPase EngA [Escherichia coli M863] gi|327252218|gb|EGE63890.1| small GTP-binding domain protein [Escherichia coli STEC_7v] gi|331079111|gb|EGI50313.1| ribosome-associated GTPase EngA [Escherichia coli H299] Length = 490 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|2240044|gb|AAB62329.1| putative GTP-binding protein [Streptococcus thermophilus] Length = 108 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 3/106 (2%) Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTE--KWEEKKDGSILIRQVIYVERP 253 DQI+D P +E+ REK+ +EIP+S VV + K +E+ D ++ IR I VER Sbjct: 1 DQITDHPERFLVSEMIREKVLQLTREEIPHSVAVVIDSMKRDEETD-TVHIRATIMVERD 59 Query: 254 SQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 SQK I++GK G +K I A+K+I +L V L +VKV+K G Sbjct: 60 SQKGIVIGKKGAMLKKIGTLARKDIELMLGDKVFLETWVKVKKIGG 105 >gi|324113005|gb|EGC06981.1| ribosome GTPase EngA [Escherichia fergusonii B253] Length = 490 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|323977306|gb|EGB72392.1| ribosome GTPase EngA [Escherichia coli TW10509] Length = 490 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|254519255|ref|ZP_05131311.1| small GTP-binding protein [Clostridium sp. 7_2_43FAA] gi|226913004|gb|EEH98205.1| small GTP-binding protein [Clostridium sp. 7_2_43FAA] Length = 438 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 7/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N+ G ++SIV TR V +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGQRISIVQDTPGVTRDRVYAQAEWLNYNFTMIDTGGIEPER 65 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K M R + I+ AD++ VVD L H++ + K ++L++NK+D + Sbjct: 66 EDIIVKQMRRQANIAIETADVIIFVVDGKEGLTPADHEVANMLRKSKKEVVLVVNKVDSL 125 Query: 144 KPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K E E A E N + I +SA++ G D+L+ + Sbjct: 126 KEE---ENAWEFYN--LGIGDPVTISASQALGLGDMLDRVVENF 164 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 81/163 (49%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKS+L+NR +G + IV+ TTR + + ++ + + +DT G+ Sbjct: 179 IAMIGKPNVGKSSLINRLLGEERLIVSDIPGTTRDSIDSALETEQGKFILVDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + +++ I+ AD+ L++D+ + ++ + + +++I+NK D Sbjct: 239 KVKEEIERYSVIRTYAAIERADVCILMIDATEGVTEQDEKIIGYAHEMNKAIMVIVNKWD 298 Query: 142 CVKP-----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 ++ +R E+ ++ K + K +SA G VL Sbjct: 299 LIEKDDKTMQRYKEELQMNLKFLKYAKYLFISAKTGQRTHKVL 341 >gi|161950068|ref|YP_404245.2| GTP-binding protein EngA [Shigella dysenteriae Sd197] gi|309784738|ref|ZP_07679371.1| small GTP-binding domain protein [Shigella dysenteriae 1617] gi|308927108|gb|EFP72582.1| small GTP-binding domain protein [Shigella dysenteriae 1617] Length = 490 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|115353264|ref|YP_775103.1| tRNA modification GTPase TrmE [Burkholderia ambifaria AMMD] gi|115283252|gb|ABI88769.1| tRNA modification GTPase trmE [Burkholderia ambifaria AMMD] Length = 489 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 15/202 (7%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 226 GKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 285 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D ++ I +WS I+ AD+V ++DS + Sbjct: 286 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSEIERADVVLHLLDSRTGMT 345 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +++ ++ +LNK D +E A L + +SA +G G D Sbjct: 346 AD-DEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAGDLTEVH----LSAKRGDGID 400 Query: 177 DVLNYLCSTLPLAPWVYSADQI 198 + L L +A W A+ + Sbjct: 401 MLRAEL---LRIAGWQAGAEGV 419 >gi|320185211|gb|EFW59991.1| GTP-binding protein EngA [Shigella flexneri CDC 796-83] gi|332092745|gb|EGI97814.1| small GTP-binding domain protein [Shigella boydii 3594-74] Length = 490 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|194432132|ref|ZP_03064421.1| ribosome-associated GTPase EngA [Shigella dysenteriae 1012] gi|194419661|gb|EDX35741.1| ribosome-associated GTPase EngA [Shigella dysenteriae 1012] gi|332089695|gb|EGI94796.1| small GTP-binding domain protein [Shigella dysenteriae 155-74] Length = 490 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|193068430|ref|ZP_03049393.1| ribosome-associated GTPase EngA [Escherichia coli E110019] gi|192958382|gb|EDV88822.1| ribosome-associated GTPase EngA [Escherichia coli E110019] Length = 490 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|89109317|ref|AP_003097.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr. W3110] gi|90111450|ref|NP_417006.2| GTPase; multicopy suppressor of ftsJ [Escherichia coli str. K-12 substr. MG1655] gi|157156728|ref|YP_001463833.1| GTP-binding protein EngA [Escherichia coli E24377A] gi|157161986|ref|YP_001459304.1| GTP-binding protein EngA [Escherichia coli HS] gi|161367551|ref|NP_289064.2| GTP-binding protein EngA [Escherichia coli O157:H7 EDL933] gi|162139766|ref|NP_311400.2| GTP-binding protein EngA [Escherichia coli O157:H7 str. Sakai] gi|168748430|ref|ZP_02773452.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4113] gi|168756283|ref|ZP_02781290.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4401] gi|168761121|ref|ZP_02786128.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4501] gi|168768603|ref|ZP_02793610.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4486] gi|168773575|ref|ZP_02798582.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4196] gi|168778477|ref|ZP_02803484.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4076] gi|168787857|ref|ZP_02812864.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC869] gi|168798882|ref|ZP_02823889.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC508] gi|170019206|ref|YP_001724160.1| GTP-binding protein EngA [Escherichia coli ATCC 8739] gi|170082121|ref|YP_001731441.1| GTP-binding protein [Escherichia coli str. K-12 substr. DH10B] gi|188494621|ref|ZP_03001891.1| GTP-binding protein EngA [Escherichia coli 53638] gi|191167672|ref|ZP_03029481.1| ribosome-associated GTPase EngA [Escherichia coli B7A] gi|193064026|ref|ZP_03045111.1| ribosome-associated GTPase EngA [Escherichia coli E22] gi|194427302|ref|ZP_03059852.1| ribosome-associated GTPase EngA [Escherichia coli B171] gi|194437572|ref|ZP_03069668.1| ribosome-associated GTPase EngA [Escherichia coli 101-1] gi|195936653|ref|ZP_03082035.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC4024] gi|208814338|ref|ZP_03255667.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4045] gi|208821434|ref|ZP_03261754.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4042] gi|209399678|ref|YP_002271981.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4115] gi|209919988|ref|YP_002294072.1| GTP-binding protein EngA [Escherichia coli SE11] gi|217326913|ref|ZP_03442996.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. TW14588] gi|218555036|ref|YP_002387949.1| GTP-binding protein EngA [Escherichia coli IAI1] gi|218696138|ref|YP_002403805.1| GTP-binding protein EngA [Escherichia coli 55989] gi|238901676|ref|YP_002927472.1| putative GTP-binding protein [Escherichia coli BW2952] gi|253772595|ref|YP_003035426.1| GTP-binding protein EngA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162485|ref|YP_003045593.1| GTP-binding protein EngA [Escherichia coli B str. REL606] gi|254794457|ref|YP_003079294.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. TW14359] gi|256017341|ref|ZP_05431206.1| GTP-binding protein EngA [Shigella sp. D9] gi|256021803|ref|ZP_05435668.1| GTP-binding protein EngA [Escherichia sp. 4_1_40B] gi|260845141|ref|YP_003222919.1| putative GTP-binding protein Der [Escherichia coli O103:H2 str. 12009] gi|260856605|ref|YP_003230496.1| putative GTP-binding protein Der [Escherichia coli O26:H11 str. 11368] gi|260869200|ref|YP_003235602.1| putative GTP-binding protein Der [Escherichia coli O111:H- str. 11128] gi|261223057|ref|ZP_05937338.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Escherichia coli O157:H7 str. FRIK2000] gi|261259392|ref|ZP_05951925.1| putative GTP-binding protein Der [Escherichia coli O157:H7 str. FRIK966] gi|291283732|ref|YP_003500550.1| GTP-binding protein engA [Escherichia coli O55:H7 str. CB9615] gi|293415776|ref|ZP_06658419.1| ribosome-associated GTPase EngA [Escherichia coli B185] gi|293446864|ref|ZP_06663286.1| ribosome-associated GTPase EngA [Escherichia coli B088] gi|301022369|ref|ZP_07186258.1| ribosome-associated GTPase EngA [Escherichia coli MS 196-1] gi|307139146|ref|ZP_07498502.1| GTP-binding protein EngA [Escherichia coli H736] gi|307312494|ref|ZP_07592127.1| ribosome-associated GTPase EngA [Escherichia coli W] gi|312973248|ref|ZP_07787420.1| small GTP-binding domain protein [Escherichia coli 1827-70] gi|331669257|ref|ZP_08370105.1| ribosome-associated GTPase EngA [Escherichia coli TA271] gi|68566316|sp|P0A6P5|DER_ECOLI RecName: Full=GTPase Der; AltName: Full=Double era-like domain protein; AltName: Full=GTP-binding protein EngA gi|68566317|sp|P0A6P6|DER_ECO57 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166920098|sp|A7ZPV4|DER_ECO24 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166920099|sp|A8A317|DER_ECOHS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037147|sp|B1IWF0|DER_ECOLC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741138|sp|B7M7L5|DER_ECO8A RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229784133|sp|B1XAY6|DER_ECODH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058973|sp|B5Z0Y0|DER_ECO5E RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058974|sp|B6I583|DER_ECOSE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783153|sp|B7LCQ1|DER_ECO55 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|259645873|sp|C4ZX86|DER_ECOBW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|85675433|dbj|BAA16397.2| predicted GTP-binding protein [Escherichia coli str. K12 substr. W3110] gi|87082120|gb|AAC75564.2| GTPase; multicopy suppressor of ftsJ [Escherichia coli str. K-12 substr. MG1655] gi|157067666|gb|ABV06921.1| GTP-binding protein EngA [Escherichia coli HS] gi|157078758|gb|ABV18466.1| GTP-binding protein EngA [Escherichia coli E24377A] gi|169754134|gb|ACA76833.1| small GTP-binding protein [Escherichia coli ATCC 8739] gi|169889956|gb|ACB03663.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr. DH10B] gi|187770576|gb|EDU34420.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4196] gi|188017037|gb|EDU55159.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4113] gi|188489820|gb|EDU64923.1| GTP-binding protein EngA [Escherichia coli 53638] gi|189003270|gb|EDU72256.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4076] gi|189356591|gb|EDU75010.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4401] gi|189362188|gb|EDU80607.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4486] gi|189368460|gb|EDU86876.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4501] gi|189372347|gb|EDU90763.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC869] gi|189378586|gb|EDU97002.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC508] gi|190902271|gb|EDV62011.1| ribosome-associated GTPase EngA [Escherichia coli B7A] gi|192929261|gb|EDV82870.1| ribosome-associated GTPase EngA [Escherichia coli E22] gi|194414623|gb|EDX30895.1| ribosome-associated GTPase EngA [Escherichia coli B171] gi|194423378|gb|EDX39369.1| ribosome-associated GTPase EngA [Escherichia coli 101-1] gi|208735615|gb|EDZ84302.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4045] gi|208741557|gb|EDZ89239.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4042] gi|209161078|gb|ACI38511.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4115] gi|209913247|dbj|BAG78321.1| putative GTP-binding protein [Escherichia coli SE11] gi|217319280|gb|EEC27705.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. TW14588] gi|218352870|emb|CAU98669.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli 55989] gi|218361804|emb|CAQ99403.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli IAI1] gi|238862452|gb|ACR64450.1| predicted GTP-binding protein [Escherichia coli BW2952] gi|242378109|emb|CAQ32882.1| 50S ribosomal subunit stability factor [Escherichia coli BL21(DE3)] gi|253323639|gb|ACT28241.1| small GTP-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974386|gb|ACT40057.1| GTP-binding protein EngA [Escherichia coli B str. REL606] gi|253978553|gb|ACT44223.1| GTP-binding protein EngA [Escherichia coli BL21(DE3)] gi|254593857|gb|ACT73218.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Escherichia coli O157:H7 str. TW14359] gi|257755254|dbj|BAI26756.1| predicted GTP-binding protein Der [Escherichia coli O26:H11 str. 11368] gi|257760288|dbj|BAI31785.1| predicted GTP-binding protein Der [Escherichia coli O103:H2 str. 12009] gi|257765556|dbj|BAI37051.1| predicted GTP-binding protein Der [Escherichia coli O111:H- str. 11128] gi|260448409|gb|ACX38831.1| small GTP-binding protein [Escherichia coli DH1] gi|290763605|gb|ADD57566.1| GTP-binding protein engA [Escherichia coli O55:H7 str. CB9615] gi|291323694|gb|EFE63122.1| ribosome-associated GTPase EngA [Escherichia coli B088] gi|291433424|gb|EFF06403.1| ribosome-associated GTPase EngA [Escherichia coli B185] gi|299881282|gb|EFI89493.1| ribosome-associated GTPase EngA [Escherichia coli MS 196-1] gi|306907417|gb|EFN37921.1| ribosome-associated GTPase EngA [Escherichia coli W] gi|309702843|emb|CBJ02174.1| GTP-binding protein [Escherichia coli ETEC H10407] gi|310331843|gb|EFP99078.1| small GTP-binding domain protein [Escherichia coli 1827-70] gi|315061830|gb|ADT76157.1| predicted GTP-binding protein [Escherichia coli W] gi|315137135|dbj|BAJ44294.1| GTP-binding protein engA [Escherichia coli DH1] gi|315615770|gb|EFU96402.1| small GTP-binding domain protein [Escherichia coli 3431] gi|320180501|gb|EFW55432.1| GTP-binding protein EngA [Shigella boydii ATCC 9905] gi|320188844|gb|EFW63503.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC1212] gi|320200075|gb|EFW74664.1| GTP-binding protein EngA [Escherichia coli EC4100B] gi|320640855|gb|EFX10343.1| GTP-binding protein Der [Escherichia coli O157:H7 str. G5101] gi|320646298|gb|EFX15225.1| GTP-binding protein Der [Escherichia coli O157:H- str. 493-89] gi|320651803|gb|EFX20183.1| GTP-binding protein Der [Escherichia coli O157:H- str. H 2687] gi|320657189|gb|EFX24998.1| GTP-binding protein Der [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662795|gb|EFX30127.1| GTP-binding protein Der [Escherichia coli O55:H7 str. USDA 5905] gi|320667599|gb|EFX34514.1| GTP-binding protein Der [Escherichia coli O157:H7 str. LSU-61] gi|323156165|gb|EFZ42324.1| small GTP-binding domain protein [Escherichia coli EPECa14] gi|323159381|gb|EFZ45366.1| small GTP-binding domain protein [Escherichia coli E128010] gi|323170218|gb|EFZ55871.1| small GTP-binding domain protein [Escherichia coli LT-68] gi|323177365|gb|EFZ62953.1| small GTP-binding domain protein [Escherichia coli 1180] gi|323184428|gb|EFZ69803.1| small GTP-binding domain protein [Escherichia coli 1357] gi|323377589|gb|ADX49857.1| ribosome-associated GTPase EngA [Escherichia coli KO11] gi|323936404|gb|EGB32694.1| ribosome-associated GTPase EngA [Escherichia coli E1520] gi|323941227|gb|EGB37412.1| ribosome GTPase EngA [Escherichia coli E482] gi|323944733|gb|EGB40800.1| ribosome-associated GTPase EngA [Escherichia coli H120] gi|323971076|gb|EGB66324.1| ribosome GTPase EngA [Escherichia coli TA007] gi|324118145|gb|EGC12042.1| ribosome GTPase EngA [Escherichia coli E1167] gi|326340309|gb|EGD64113.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. 1125] gi|326344993|gb|EGD68737.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. 1044] gi|331064451|gb|EGI36362.1| ribosome-associated GTPase EngA [Escherichia coli TA271] gi|332344383|gb|AEE57717.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|333000699|gb|EGK20275.1| small GTP-binding domain protein [Shigella flexneri VA-6] Length = 490 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|332087958|gb|EGI93083.1| small GTP-binding domain protein [Shigella boydii 5216-82] Length = 490 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|320175074|gb|EFW50187.1| GTP-binding protein EngA [Shigella dysenteriae CDC 74-1112] Length = 490 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQELSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|170681267|ref|YP_001744699.1| GTP-binding protein EngA [Escherichia coli SMS-3-5] gi|218706014|ref|YP_002413533.1| GTP-binding protein EngA [Escherichia coli UMN026] gi|293405952|ref|ZP_06649944.1| GTP-binding protein engA [Escherichia coli FVEC1412] gi|298381753|ref|ZP_06991352.1| GTP-binding protein engA [Escherichia coli FVEC1302] gi|331664074|ref|ZP_08364984.1| ribosome-associated GTPase EngA [Escherichia coli TA143] gi|226741139|sp|B7N699|DER_ECOLU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741140|sp|B1LNG6|DER_ECOSM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|170518985|gb|ACB17163.1| GTP-binding protein EngA [Escherichia coli SMS-3-5] gi|218433111|emb|CAR14008.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli UMN026] gi|284922461|emb|CBG35548.1| GTP-binding protein [Escherichia coli 042] gi|291428160|gb|EFF01187.1| GTP-binding protein engA [Escherichia coli FVEC1412] gi|298279195|gb|EFI20709.1| GTP-binding protein engA [Escherichia coli FVEC1302] gi|323961327|gb|EGB56939.1| ribosome GTPase EngA [Escherichia coli H489] gi|331059873|gb|EGI31850.1| ribosome-associated GTPase EngA [Escherichia coli TA143] Length = 490 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|146313778|ref|YP_001178852.1| tRNA modification GTPase TrmE [Enterobacter sp. 638] gi|166991109|sp|A4WGH1|MNME_ENT38 RecName: Full=tRNA modification GTPase mnmE gi|145320654|gb|ABP62801.1| tRNA modification GTPase trmE [Enterobacter sp. 638] gi|190171238|gb|ACE63689.1| ThdF [Enterobacter sp. 638] Length = 454 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTSAVDPADIWPDF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L V +SA G G +D+ N+L Sbjct: 321 IARLPAKLPITVVRNKADMTGETLGLSD-------VNGHSLIRLSARTGEGVEDLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|313157956|gb|EFR57362.1| ribosome biogenesis GTPase Der [Alistipes sp. HGB5] Length = 434 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 10/180 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR VG + +IV TTR G + +DT G N+ Sbjct: 4 VAIVGRPNVGKSTLFNRLVGQRKAIVDATAGTTRDRHYGKTDWNGKEFSVIDTGGYTVNS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNKIDC 142 +D + + R I AD++ +V+ + ++ L+ +I +R+S ++IL+ NK+D Sbjct: 64 EDIFEDEIRRQVLLAIDEADVILFLVEVATGI-TDLDQLMADILRRTSKKVILVCNKVD- 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 +++ E + + F +S+ G G D+++ + + LP A V D+ DLP Sbjct: 122 -NNDQIYSSHEFY--ALGLGDPFCISSMSGSGTGDLMDAILAALP-AETVPEEDE--DLP 175 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 9/128 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + +VG N GKS++ N +G + +IVT TTR + ++ +DT G+ Sbjct: 177 ITIVGRPNVGKSSMTNALLGEERNIVTSIAGTTRDSIHTRYNKFGMDFYLVDTAGMRKKG 236 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILN 138 + L + S I+++D+ L++D+ + L+ +NIH+L I + ++++N Sbjct: 237 KAMEDLEFYSVMRSIRAIENSDVCILMLDAQQGLESQDLNIHNL---IVRNRKGCVIVVN 293 Query: 139 KIDCVKPE 146 K D ++ + Sbjct: 294 KWDLIEKD 301 >gi|300726752|ref|ZP_07060182.1| ribosome-associated GTPase EngA [Prevotella bryantii B14] gi|299775865|gb|EFI72445.1| ribosome-associated GTPase EngA [Prevotella bryantii B14] Length = 437 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 5/170 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NRF ++ +IV+ TTR G VS +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRFTQSRRAIVSDTAGTTRDRQYGKVSWNGKDFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + R + AD+V +VD+ + D+ K + + +IL+ NK+ Sbjct: 62 VKSDDIFEDAIRRQVLVATEEADLVLFLVDTETGVTDWDVDVAKILRRAKLPIILVANKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D E AE + + +SA G G D+L+ + +P +P Sbjct: 122 D--NSGEYYEAAEFYK--LGLGDPVCISAATGGGTGDLLDMILEKMPNSP 167 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 5/135 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTKYDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S I+++D+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRAIENSDVCILMLDATRGIEAQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 V--KPERLLEQAEIA 155 V K +++++ E A Sbjct: 299 VEEKSQKVIDTFENA 313 >gi|312862786|ref|ZP_07723026.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396] gi|311101646|gb|EFQ59849.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 220 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L LL EI+K S+R+IL LNK Sbjct: 280 IRDTDDVVEKIGVERSKKALEEADLVLLVLNSSEPLTEQDRTLL-EISKNSNRIIL-LNK 337 Query: 140 IDC 142 D Sbjct: 338 TDL 340 >gi|262383937|ref|ZP_06077073.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_33B] gi|262294835|gb|EEY82767.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_33B] Length = 437 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR G + +IV + TTR G V + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILILNK 139 +D + + + + I+ AD++ VVD I DL E+A +R R +I++ NK Sbjct: 65 EDVFEEEINKQVKVAIEEADVILFVVDVLN----GITDLDMEVAQILRRCKRPVIVVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + L A + F +SA G D+L+ + +TLP Sbjct: 121 ADNYE----LHPASAEFYSFGLGDPFCISAINGSYTGDLLDKIVATLP 164 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A++G NAGKS+L+N F+G IVT TTR + ++ +DT GI Sbjct: 178 IAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKKG 237 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ ++ S I+++D+ L++D+ R ++ ++ + K L++ +NK Sbjct: 238 KVNEDLEYYSVI--RSIRAIENSDVCVLMLDATRGIESQDMNIFSLVQKNKKGLVVCVNK 295 Query: 140 IDCVK 144 D V+ Sbjct: 296 WDLVE 300 >gi|254417083|ref|ZP_05030829.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420] gi|196176061|gb|EDX71079.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420] Length = 461 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 26/177 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV-------SEKESQIV-FLD 76 VA+VG N GKS+L+N G K +IV+ TTR + IV +E ESQ+ +D Sbjct: 179 VAIVGRPNVGKSSLLNALTGEKRAIVSSVSGTTRDAIDMIVERPGNPETETESQLYRLID 238 Query: 77 TPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T GI K+ + I ++ I+ AD+V VVD+ + L IA+ Sbjct: 239 TAGIRRKKNVEYGPEFFGINRAFKAIRRADVVLFVVDALDGVTEQDQKLAGRIAEDGRAA 298 Query: 134 ILILNKIDCVKP--------ERLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVLN 180 ++++NK D ++ E+LL+ N+L F+E M VSA G D +L+ Sbjct: 299 VILVNKWDAIEKDTYTIYEYEKLLK-----NRLYFVEWAPMIFVSALTGKRVDKILD 350 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFN 82 VA++G N GKSTLVNR G +IV + TR ++ +DT G +F+ Sbjct: 5 VVAVIGRPNVGKSTLVNRLAGVMDAIVHDQPGVTRDRTYRPAFWQDRDYSIVDTGGLVFD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + L+ + + + A LVVD + + + + ++L +NK C Sbjct: 65 DDTEFLPLIREQAMAALSEASAAILVVDGQMGPTAADYAIADWLRQHPVPVVLAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P++ L QA +L E F VSA G G ++L+ L + LP Sbjct: 123 ESPQQGLIQAAEFWELGLGEP-FPVSAIHGAGTGELLDQLITHLP 166 >gi|301312102|ref|ZP_07218024.1| ribosome-associated GTPase EngA [Bacteroides sp. 20_3] gi|300830204|gb|EFK60852.1| ribosome-associated GTPase EngA [Bacteroides sp. 20_3] Length = 437 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR G + +IV + TTR G V + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILILNK 139 +D + + + + I+ AD++ VVD I DL E+A +R R +I++ NK Sbjct: 65 EDVFEEEINKQVKVAIEEADVILFVVDVLN----GITDLDMEVAQILRRCKRPVIVVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + L A + F +SA G D+L+ + +TLP Sbjct: 121 ADNYE----LHPASAEFYSFGLGDPFCISAINGSYTGDLLDKIVATLP 164 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A++G NAGKS+L+N F+G IVT TTR + ++ +DT GI Sbjct: 178 IAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKKG 237 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ ++ S I+++D+ L++D+ R ++ ++ + K L++ +NK Sbjct: 238 KVNEDLEYYSVI--RSIRAIENSDVCVLMLDATRGIESQDMNIFSLVQKNKKGLVVCVNK 295 Query: 140 IDCVK 144 D ++ Sbjct: 296 WDLIE 300 >gi|224417838|ref|ZP_03655844.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491] Length = 473 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 1/124 (0%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A++G NAGKS+L NRF ++++I + TTR + + VS K++ + LDT G+ + Sbjct: 13 GTIAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDTGGL-D 71 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS + + S + + AD++ VVD + + K++ + L++NKID Sbjct: 72 ESDSLFVQVTKHSHNAGESADLILYVVDGKMPPNPLDKKIFYTLQKKNPNIFLVVNKIDN 131 Query: 143 VKPE 146 K + Sbjct: 132 DKEQ 135 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 10/156 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + ++G N GKS+L+N +G + S+V+ K TT V + + ++ F+DT GI Sbjct: 207 IGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMGEIEGRKVNFVDTAGIRRRG 266 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNK 139 + K + + +K +DI LV+D+ EL I L+ E +I++LNK Sbjct: 267 KIEGLEKFALNRTREILKRSDIAVLVLDASSPFVELDEKIAGLIDEF---KLGVIVVLNK 323 Query: 140 IDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGH 173 D + ++E + K + +SA G Sbjct: 324 WDIAHKDYKGIMEDFRLRFKFLDYAPVLTISAKNGR 359 >gi|331643131|ref|ZP_08344266.1| ribosome-associated GTPase EngA [Escherichia coli H736] gi|331653939|ref|ZP_08354940.1| ribosome-associated GTPase EngA [Escherichia coli M718] gi|331678502|ref|ZP_08379177.1| ribosome-associated GTPase EngA [Escherichia coli H591] gi|332278336|ref|ZP_08390749.1| conserved hypothetical protein [Shigella sp. D9] gi|25328223|pir||E91050 probable GTP-binding factor [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25328252|pir||A85895 probable GTP-binding factor Z3774 [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12516902|gb|AAG57621.1|AE005480_8 putative GTP-binding factor [Escherichia coli O157:H7 str. EDL933] gi|13362843|dbj|BAB36796.1| putative GTP-binding factor [Escherichia coli O157:H7 str. Sakai] gi|209763418|gb|ACI80021.1| putative GTP-binding factor [Escherichia coli] gi|209763420|gb|ACI80022.1| putative GTP-binding factor [Escherichia coli] gi|209763422|gb|ACI80023.1| putative GTP-binding factor [Escherichia coli] gi|209763426|gb|ACI80025.1| putative GTP-binding factor [Escherichia coli] gi|331039929|gb|EGI12149.1| ribosome-associated GTPase EngA [Escherichia coli H736] gi|331048788|gb|EGI20864.1| ribosome-associated GTPase EngA [Escherichia coli M718] gi|331074962|gb|EGI46282.1| ribosome-associated GTPase EngA [Escherichia coli H591] gi|332100688|gb|EGJ04034.1| conserved hypothetical protein [Shigella sp. D9] Length = 503 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 17 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 76 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 77 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 136 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 137 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 176 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 218 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 277 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 278 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 337 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 338 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 378 >gi|333002306|gb|EGK21870.1| small GTP-binding domain protein [Shigella flexneri K-272] gi|333016129|gb|EGK35461.1| small GTP-binding domain protein [Shigella flexneri K-227] Length = 490 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|331673966|ref|ZP_08374729.1| ribosome-associated GTPase EngA [Escherichia coli TA280] gi|331069239|gb|EGI40631.1| ribosome-associated GTPase EngA [Escherichia coli TA280] Length = 503 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 17 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 76 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 77 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 136 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 137 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 176 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 218 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 277 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + L I L++++NK D Sbjct: 278 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSQLGFILNSGRSLVIVVNKWD 337 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 338 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 378 >gi|300904315|ref|ZP_07122172.1| ribosome-associated GTPase EngA [Escherichia coli MS 84-1] gi|300403747|gb|EFJ87285.1| ribosome-associated GTPase EngA [Escherichia coli MS 84-1] Length = 492 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|81242044|gb|ABB62754.1| putative GTP-binding factor [Shigella dysenteriae Sd197] Length = 503 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 17 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 76 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 77 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 136 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 137 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 176 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 218 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 277 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 278 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 337 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 338 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 378 >gi|322516820|ref|ZP_08069722.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC 49124] gi|322124657|gb|EFX96121.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC 49124] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 220 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L LL EI+K S+R+IL LNK Sbjct: 280 IRDTDDVVEKIGVERSKKALEEADLVLLVLNSSEPLTEQDRTLL-EISKNSNRIIL-LNK 337 Query: 140 IDC 142 D Sbjct: 338 TDL 340 >gi|300898385|ref|ZP_07116728.1| ribosome-associated GTPase EngA [Escherichia coli MS 198-1] gi|300940238|ref|ZP_07154836.1| ribosome-associated GTPase EngA [Escherichia coli MS 21-1] gi|300357925|gb|EFJ73795.1| ribosome-associated GTPase EngA [Escherichia coli MS 198-1] gi|300454934|gb|EFK18427.1| ribosome-associated GTPase EngA [Escherichia coli MS 21-1] Length = 499 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|187932414|ref|YP_001887734.1| tRNA modification GTPase TrmE [Clostridium botulinum B str. Eklund 17B] gi|187720567|gb|ACD21788.1| tRNA modification GTPase TrmE [Clostridium botulinum B str. Eklund 17B] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 85/161 (52%), Gaps = 13/161 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V ++G N GKS+L+N + K +IVT TTR I+ ++ I DT G Sbjct: 223 RDGLNVVIIGKPNVGKSSLLNVLLKEKRAIVTDVPGTTRDIIEEYLNIDGIPIKITDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D+ K+ + S I+ AD++ L++DS REL+ +++ I ++ I++LNK Sbjct: 283 IRETEDTVEKIGVERSREKIEEADLIILILDSSRELEEEDKEIINTIKDKNH--IVLLNK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D +R + ++ N++ +SA G+G +++ N Sbjct: 341 TDL---DRRIADIDLDNQI-------NISAKTGYGIEELKN 371 >gi|332983463|ref|YP_004464904.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON] gi|332701141|gb|AEE98082.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON] Length = 460 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 10/155 (6%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+L+N + A +IVT TTR I+ V+ + +DT GI A D Sbjct: 226 AIIGRPNVGKSSLLNALLKADRAIVTDIPGTTRDIIEDYVNVNGIALNIIDTAGIREAAD 285 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDCV 143 ++ I + T+ AD+V V+D + L H + IA S + I++LNK D Sbjct: 286 EIERIGIERTRDTVYRADLVIFVLDGSQPL----HQDDRAIASLISSKKAIVVLNKSDL- 340 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 R++ +AE+ N ++ +S +G+G DD+ Sbjct: 341 --GRVVTEAEV-NAVLPDAPVIEMSLKEGYGLDDL 372 >gi|325496456|gb|EGC94315.1| putative GTP-binding factor [Escherichia fergusonii ECD227] Length = 499 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|300820819|ref|ZP_07100969.1| ribosome-associated GTPase EngA [Escherichia coli MS 119-7] gi|300927126|ref|ZP_07142874.1| ribosome-associated GTPase EngA [Escherichia coli MS 182-1] gi|300930151|ref|ZP_07145572.1| ribosome-associated GTPase EngA [Escherichia coli MS 187-1] gi|300951784|ref|ZP_07165599.1| ribosome-associated GTPase EngA [Escherichia coli MS 116-1] gi|300958859|ref|ZP_07170967.1| ribosome-associated GTPase EngA [Escherichia coli MS 175-1] gi|301302868|ref|ZP_07208996.1| ribosome-associated GTPase EngA [Escherichia coli MS 124-1] gi|301330398|ref|ZP_07223040.1| ribosome-associated GTPase EngA [Escherichia coli MS 78-1] gi|301648266|ref|ZP_07248009.1| ribosome-associated GTPase EngA [Escherichia coli MS 146-1] gi|309794442|ref|ZP_07688865.1| ribosome-associated GTPase EngA [Escherichia coli MS 145-7] gi|300314511|gb|EFJ64295.1| ribosome-associated GTPase EngA [Escherichia coli MS 175-1] gi|300416896|gb|EFK00207.1| ribosome-associated GTPase EngA [Escherichia coli MS 182-1] gi|300448981|gb|EFK12601.1| ribosome-associated GTPase EngA [Escherichia coli MS 116-1] gi|300461957|gb|EFK25450.1| ribosome-associated GTPase EngA [Escherichia coli MS 187-1] gi|300526572|gb|EFK47641.1| ribosome-associated GTPase EngA [Escherichia coli MS 119-7] gi|300841803|gb|EFK69563.1| ribosome-associated GTPase EngA [Escherichia coli MS 124-1] gi|300843627|gb|EFK71387.1| ribosome-associated GTPase EngA [Escherichia coli MS 78-1] gi|301073653|gb|EFK88459.1| ribosome-associated GTPase EngA [Escherichia coli MS 146-1] gi|308121898|gb|EFO59160.1| ribosome-associated GTPase EngA [Escherichia coli MS 145-7] gi|315256531|gb|EFU36499.1| ribosome-associated GTPase EngA [Escherichia coli MS 85-1] gi|324020071|gb|EGB89290.1| ribosome-associated GTPase EngA [Escherichia coli MS 117-3] Length = 499 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|289425429|ref|ZP_06427206.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK187] gi|289154407|gb|EFD03095.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK187] gi|313764267|gb|EFS35631.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL013PA1] gi|313791953|gb|EFS40054.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA1] gi|313801564|gb|EFS42804.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA2] gi|313812757|gb|EFS50471.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL025PA1] gi|313816358|gb|EFS54072.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL059PA1] gi|313827352|gb|EFS65066.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL063PA2] gi|313838918|gb|EFS76632.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL086PA1] gi|314915744|gb|EFS79575.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA4] gi|314917888|gb|EFS81719.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA1] gi|314920270|gb|EFS84101.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA3] gi|314931490|gb|EFS95321.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL067PA1] gi|314955499|gb|EFS99902.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL027PA1] gi|314957875|gb|EFT01978.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA1] gi|314962609|gb|EFT06709.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL082PA1] gi|315077825|gb|EFT49876.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL053PA2] gi|315098722|gb|EFT70698.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL059PA2] gi|315101509|gb|EFT73485.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL046PA1] gi|315108797|gb|EFT80773.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL030PA2] gi|327450594|gb|EGE97248.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA3] gi|327453328|gb|EGE99982.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL092PA1] gi|327454067|gb|EGF00722.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL083PA2] gi|328753149|gb|EGF66765.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL025PA2] gi|328754012|gb|EGF67628.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA1] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 4/180 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F N+ D +++ VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 7 FRNDPSDDIEEALPKPVVAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEW 66 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 Q V +DT G + ++ + I AD V VVD++ +++ + Sbjct: 67 SGRQFVLVDTGGWASDASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLR 126 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +++ NK+D + E E A + N + + + VSA G G D+L+ L + LP Sbjct: 127 QSRKPVVVAANKVDNARGES--EAATMWN--LGLGEPHPVSAMHGRGSGDLLDALIAVLP 182 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA+VG N GKS+L+NR +V+ TT V +V+ + F+DT G+ Sbjct: 197 VAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRV 256 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L + + I+ A++ +V+D+ + +L + +++ NK D Sbjct: 257 KEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWD 316 >gi|256848511|ref|ZP_05553953.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis 101-4-CHN] gi|256714778|gb|EEU29757.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis 101-4-CHN] Length = 462 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT+ TTR ++ V+ + + +DT G Sbjct: 221 RDGLATAIIGRPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNDVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D+ K+ + S I AD++ L++DS + L L+ + A + I+I NK Sbjct: 281 IRHTDDTVEKIGVERSRQAIDTADLILLLIDSSQPLTKEDQQLIAQTANKPR--IIIFNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D P + ++Q ++ LV +K S TK G D++ Sbjct: 339 SDL--PTK-VDQDKL-QALVDGDKVITASMTKHEGIDEL 373 >gi|209763424|gb|ACI80024.1| putative GTP-binding factor [Escherichia coli] Length = 503 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 17 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 76 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 77 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 136 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 137 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 176 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 218 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 277 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 278 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 337 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 ++ E + E + +L FI+ + +SA G G ++ Sbjct: 338 GLRQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 378 >gi|190171192|gb|ACE63666.1| ThdF [Enterobacter cloacae] Length = 439 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 211 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 270 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W I+ AD V +VD V+ ++ + IA+ ++L ++ NK D Sbjct: 271 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKAD 330 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E I++ V +SA G G DD+ N+L ++ Sbjct: 331 VTG-----ETLGISD--VNGHSLIRLSARTGEGVDDLRNHLKQSM 368 >gi|225551948|ref|ZP_03772888.1| ribosome-associated GTPase EngA [Borrelia sp. SV1] gi|225370946|gb|EEH00376.1| ribosome-associated GTPase EngA [Borrelia sp. SV1] Length = 433 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 5/172 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S++K D++ LV+D + E+ + + +++ + K SS+++L+LNK+D Sbjct: 67 DEISKIVVQKVLSSLKKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 E L A + L F + F+VSA G + ++L + A SAD Sbjct: 126 KECL---AHEFHNLGF-KHYFLVSAAHCRGITKLRDFLKVEVGEAGIESSAD 173 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 7/124 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G +++IV+ + TTR ++ + +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D EL + + K+ +I++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYVTKKGKGIIIVFSK 293 Query: 140 IDCV 143 D V Sbjct: 294 WDLV 297 >gi|322835121|ref|YP_004215148.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602] gi|321170322|gb|ADW76021.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602] Length = 454 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 17/179 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ A D ++ I +W+ I+ AD+V +VD D+ E Sbjct: 261 LDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADLVLFMVDGTTTEATEPADIWPEF 320 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R S ++++ NK D L Q E+ +SA G G D + ++L Sbjct: 321 MARLPASLPIVVVRNKADITG--EALGQTEVNG-----HSLIRLSARTGDGVDLLRDHL 372 >gi|312797626|ref|YP_004030548.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Burkholderia rhizoxinica HKI 454] gi|312169401|emb|CBW76404.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Burkholderia rhizoxinica HKI 454] Length = 493 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 16/155 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ + VQ +++ G V L G N GKS+L+N VGA+++IVT T Sbjct: 231 GKLARIRDALAAVQRDAKQGALLREGLSVVLAGQPNVGKSSLLNALVGAELAIVTPIAGT 290 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ + +D +L I SW+ I+ AD+V ++D+ + Sbjct: 291 TRDKVAQTIQIEGIPLHVIDTAGLRDTQDEVERLGIARSWNEIERADVVLHLLDARDGMS 350 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDC--VKPE 146 V H IA R ++ I NKID V+P+ Sbjct: 351 VEDH----AIAARFPAGVPVVRIFNKIDLAGVEPD 381 >gi|316934207|ref|YP_004109189.1| GTP-binding proten HflX [Rhodopseudomonas palustris DX-1] gi|315601921|gb|ADU44456.1| GTP-binding proten HflX [Rhodopseudomonas palustris DX-1] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 19/240 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R I + + DT G + Sbjct: 225 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRAIQLPHGGKAMLSDTVGFISN 284 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKV---NIHDLLKEIA--KRSSRLILIL 137 + R + + AD++ V D SH + + ++ ++L+++ S R++ + Sbjct: 285 LPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQQSDVDNVLRQLGVDAASGRILEVW 344 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL----NYLCSTLPLAPWVY 193 NKID +PE+ E IA + +VSA G G D++L L +T + Sbjct: 345 NKIDRFEPEQRDELKNIAARRPEDHPCLLVSAVSGEGVDELLLAIEQRLAATRTVLDLSV 404 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERP 253 A + + H AE+ L K++ V+T + E+ K I++ + V RP Sbjct: 405 DAADGAGVSWLHRNAEV--------LAKDLVDGRYVMTVRVEDNKR-DIVVERFGAVPRP 455 >gi|260495366|ref|ZP_05815493.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33] gi|260197144|gb|EEW94664.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33] Length = 455 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 15/158 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D RE+ I+D++ + ++I ILNKID Sbjct: 283 IIENIGVEKSKELINSADLILYVIDISREIDEEDFRIYDII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K L +K IEK +SA G D++ N Sbjct: 338 KKDIDL-------SKFSKIEKWIEISALSKIGIDNLEN 368 >gi|253827178|ref|ZP_04870063.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491] gi|313141379|ref|ZP_07803572.1| GTP-binding protein engA [Helicobacter canadensis MIT 98-5491] gi|253510584|gb|EES89243.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491] gi|313130410|gb|EFR48027.1| GTP-binding protein engA [Helicobacter canadensis MIT 98-5491] Length = 466 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 1/124 (0%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A++G NAGKS+L NRF ++++I + TTR + + VS K++ + LDT G+ + Sbjct: 6 GTIAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDTGGL-D 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS + + S + + AD++ VVD + + K++ + L++NKID Sbjct: 65 ESDSLFVQVTKHSHNAGESADLILYVVDGKMPPNPLDKKIFYTLQKKNPNIFLVVNKIDN 124 Query: 143 VKPE 146 K + Sbjct: 125 DKEQ 128 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 10/156 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + ++G N GKS+L+N +G + S+V+ K TT V + + ++ F+DT GI Sbjct: 200 IGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMGEIEGRKVNFVDTAGIRRRG 259 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNK 139 + K + + +K +DI LV+D+ EL I L+ E +I++LNK Sbjct: 260 KIEGLEKFALNRTREILKRSDIAVLVLDASSPFVELDEKIAGLIDEF---KLGVIVVLNK 316 Query: 140 IDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGH 173 D + ++E + K + +SA G Sbjct: 317 WDIAHKDYKGIMEDFRLRFKFLDYAPVLTISAKNGR 352 >gi|213863110|ref|ZP_03386365.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 72 Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 43/63 (68%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E Q +++DT Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 78 PGI 80 PG+ Sbjct: 64 PGL 66 >gi|301024743|ref|ZP_07188383.1| ribosome-associated GTPase EngA [Escherichia coli MS 69-1] gi|300396412|gb|EFJ79950.1| ribosome-associated GTPase EngA [Escherichia coli MS 69-1] Length = 499 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVK---PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + E++ E + + + +SA G G ++ Sbjct: 334 GLSQDVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|291561652|emb|CBL40451.1| tRNA modification GTPase trmE [butyrate-producing bacterium SS3/4] Length = 471 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG +IVT TTR I+ + + + +DT GI + +D Sbjct: 239 ILGKPNAGKSSLMNVLVGEDRAIVTDVAGTTRDILEEHIYLQGISLNVVDTAGIRDTEDV 298 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + K AD++ VVD REL N + ++ I +R S +++LNK D Sbjct: 299 VEKIGVSRAMEEAKKADLIIYVVDGSRELDENDYQIMDFIKERKS--VVLLNKSDL 352 >gi|327327397|gb|EGE69173.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL103PA1] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 4/180 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F N+ D +++ VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 7 FRNDPSDDIEEALPKPVVAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEW 66 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 Q V +DT G + ++ + I AD V VVD++ +++ + Sbjct: 67 SGRQFVLVDTGGWASDASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLR 126 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +++ NK+D + E E A + N + + + VSA G G D+L+ L + LP Sbjct: 127 QSRKPVVVAANKVDNTRGES--EAATMWN--LGLGEPHPVSAMHGRGSGDLLDALIAVLP 182 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA+VG N GKS+L+NR +V+ TT V +V+ + F+DT G+ Sbjct: 197 VAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRV 256 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L + + I+ A++ +V+D+ + +L + +++ NK D Sbjct: 257 KEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWD 316 >gi|314923527|gb|EFS87358.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL001PA1] gi|314966574|gb|EFT10673.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL082PA2] gi|315092905|gb|EFT64881.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL060PA1] gi|315103573|gb|EFT75549.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA2] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 4/180 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F N+ D +++ VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 7 FRNDPSDDIEEALPKPVVAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEW 66 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 Q V +DT G + ++ + I AD V VVD++ +++ + Sbjct: 67 SGRQFVLVDTGGWASDASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLR 126 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +++ NK+D + E E A + N + + + VSA G G D+L+ L + LP Sbjct: 127 QSRKPVVVAANKVDNTRGES--EAATMWN--LGLGEPHPVSAMHGRGSGDLLDALIAVLP 182 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA+VG N GKS+L+NR +V+ TT V +V+ + F+DT G+ Sbjct: 197 VAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRV 256 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L + + I+ A++ +V+D+ + +L + +++ NK D Sbjct: 257 KEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWD 316 >gi|300817719|ref|ZP_07097934.1| ribosome-associated GTPase EngA [Escherichia coli MS 107-1] gi|300529707|gb|EFK50769.1| ribosome-associated GTPase EngA [Escherichia coli MS 107-1] Length = 499 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+H + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|331086948|ref|ZP_08336024.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409609|gb|EGG89048.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 9_1_43BFAA] Length = 400 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 9/153 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N G + +IVT TTR I+ + + +DT GI + +D Sbjct: 168 IVGKPNAGKSSLLNVLAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTAGIRDTEDI 227 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + + K AD++ VVD+ R L N +L+ I ++ + ++L + +D V + Sbjct: 228 VEKIGVDKAKDYAKDADLIIYVVDASRALDENDEQILEMIREKQALILLNKSDLDTVITK 287 Query: 147 RLLEQAEIANKLVFIEKTFM-VSATKGHGCDDV 178 LL++ + EK + +SA + HG + V Sbjct: 288 ELLQK--------YTEKPMIEISAKQEHGIEKV 312 >gi|150009038|ref|YP_001303781.1| GTP-binding protein EngA [Parabacteroides distasonis ATCC 8503] gi|166225833|sp|A6LEP5|DER_PARD8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149937462|gb|ABR44159.1| GTP-binding protein, Era/ThdF family [Parabacteroides distasonis ATCC 8503] Length = 437 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR G + +IV + TTR G V + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILILNK 139 +D + + + + I+ AD++ VVD I DL E+A +R R +I++ NK Sbjct: 65 EDVFEEEINKQVKVAIEEADVILFVVDVLN----GITDLDMEVAQILRRCKRPVIVVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D L A + + F +SA G D+L+ + +TLP Sbjct: 121 ADNYD----LHPASAEFYSFGLGEPFCISAINGSYTGDLLDKIVATLP 164 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A++G NAGKS+L+N F+G IVT TTR + ++ +DT GI Sbjct: 178 IAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKKG 237 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ ++ S TI+++D+ L++D+ R ++ ++ + K L++ +NK Sbjct: 238 KVNEDLEYYSVI--RSIRTIENSDVCVLMLDATRGIESQDMNIFSLVQKNKKGLVVCVNK 295 Query: 140 IDCVK 144 D ++ Sbjct: 296 WDLIE 300 >gi|50842690|ref|YP_055917.1| GTP-binding protein EngA [Propionibacterium acnes KPA171202] gi|289428509|ref|ZP_06430193.1| ribosome-associated GTPase EngA [Propionibacterium acnes J165] gi|295130771|ref|YP_003581434.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK137] gi|50840292|gb|AAT82959.1| putative GTP binding protein [Propionibacterium acnes KPA171202] gi|289158203|gb|EFD06422.1| ribosome-associated GTPase EngA [Propionibacterium acnes J165] gi|291376501|gb|ADE00356.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK137] gi|313772016|gb|EFS37982.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL074PA1] gi|313807708|gb|EFS46195.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA2] gi|313810216|gb|EFS47937.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL083PA1] gi|313818745|gb|EFS56459.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL046PA2] gi|313820515|gb|EFS58229.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA1] gi|313822679|gb|EFS60393.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA2] gi|313825388|gb|EFS63102.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL063PA1] gi|313830547|gb|EFS68261.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL007PA1] gi|313833583|gb|EFS71297.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL056PA1] gi|314924995|gb|EFS88826.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA3] gi|314960338|gb|EFT04440.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA2] gi|314973547|gb|EFT17643.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL053PA1] gi|314975769|gb|EFT19864.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL045PA1] gi|314978673|gb|EFT22767.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL072PA2] gi|314983751|gb|EFT27843.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA1] gi|314987933|gb|EFT32024.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA2] gi|314989743|gb|EFT33834.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA3] gi|315080449|gb|EFT52425.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL078PA1] gi|315084779|gb|EFT56755.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL027PA2] gi|315085464|gb|EFT57440.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA3] gi|315088479|gb|EFT60455.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL072PA1] gi|315095821|gb|EFT67797.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL038PA1] gi|315105878|gb|EFT77854.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL030PA1] gi|327326374|gb|EGE68164.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL096PA2] gi|327330445|gb|EGE72194.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL097PA1] gi|327331752|gb|EGE73489.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL096PA3] gi|327443529|gb|EGE90183.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL013PA2] gi|327445732|gb|EGE92386.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL043PA2] gi|327448285|gb|EGE94939.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL043PA1] gi|328754740|gb|EGF68356.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL020PA1] gi|328760937|gb|EGF74502.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL099PA1] gi|332675613|gb|AEE72429.1| GTP-binding protein EngA [Propionibacterium acnes 266] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 4/180 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F N+ D +++ VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 7 FRNDPSDDIEEALPKPVVAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEW 66 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 Q V +DT G + ++ + I AD V VVD++ +++ + Sbjct: 67 SGRQFVLVDTGGWASDASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLR 126 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +++ NK+D + E E A + N + + + VSA G G D+L+ L + LP Sbjct: 127 QSRKPVVVAANKVDNARGES--EAATMWN--LGLGEPHPVSAMHGRGSGDLLDALIAVLP 182 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA+VG N GKS+L+NR +V+ TT V +V+ + F+DT G+ Sbjct: 197 VAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRV 256 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L + + I+ A++ +V+D+ + +L + +++ NK D Sbjct: 257 KEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWD 316 >gi|282853835|ref|ZP_06263172.1| ribosome-associated GTPase EngA [Propionibacterium acnes J139] gi|282583288|gb|EFB88668.1| ribosome-associated GTPase EngA [Propionibacterium acnes J139] gi|314981499|gb|EFT25593.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA3] gi|315092162|gb|EFT64138.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA4] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 4/180 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F N+ D +++ VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 7 FRNDPSDDIEEALPKPVVAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEW 66 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 Q V +DT G + ++ + I AD V VVD++ +++ + Sbjct: 67 SGRQFVLVDTGGWASDASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLR 126 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +++ NK+D + E E A + N + + + VSA G G D+L+ L + LP Sbjct: 127 QSRKPVVVAANKVDNARGES--EAATMWN--LGLGEPHPVSAMHGRGSGDLLDALIAVLP 182 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA+VG N GKS+L+NR +V+ TT V +V+ + F+DT G+ Sbjct: 197 VAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRV 256 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L + + I+ A++ +V+D+ + +L + +++ NK D Sbjct: 257 KEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWD 316 >gi|218781965|ref|YP_002433283.1| tRNA modification GTPase TrmE [Desulfatibacillum alkenivorans AK-01] gi|218763349|gb|ACL05815.1| tRNA modification GTPase TrmE [Desulfatibacillum alkenivorans AK-01] Length = 463 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 14/165 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 A+VG N GKS+L+N G + SIVT TR ++R V + DT G+ + Sbjct: 231 AAIVGRPNVGKSSLMNALAGQERSIVTETPGATRDVIREPVLIRGLHFTLSDTAGLRTSS 290 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC-- 142 D+ + ++ + + +D+V LVV++ +L +LL + +R++++ NK+D Sbjct: 291 DAVEMIGVQRAKDAMGESDLVMLVVEAGSDLSPEDQELLHQAEHSCNRVLMVYNKMDLHP 350 Query: 143 -VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 P + + A +A VSA G G D + + ++L Sbjct: 351 GFIPSPVRDYAPVA-----------VSAKTGQGLDGLRRAMENSL 384 >gi|25010947|ref|NP_735342.1| tRNA modification GTPase TrmE [Streptococcus agalactiae NEM316] gi|77413158|ref|ZP_00789357.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515] gi|32171831|sp|Q8E5T7|MNME_STRA3 RecName: Full=tRNA modification GTPase mnmE gi|23095326|emb|CAD46537.1| unknown [Streptococcus agalactiae NEM316] gi|77160776|gb|EAO71888.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515] Length = 458 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L + LL E++K S+R++L LNK Sbjct: 282 IRDTDDIVEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLL-ELSKESNRIVL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|257878640|ref|ZP_05658293.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933] gi|257881306|ref|ZP_05660959.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502] gi|257893099|ref|ZP_05672752.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408] gi|258615276|ref|ZP_05713046.1| tRNA modification GTPase TrmE [Enterococcus faecium DO] gi|260558221|ref|ZP_05830417.1| tRNA modification GTPase mnmE [Enterococcus faecium C68] gi|293563245|ref|ZP_06677697.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162] gi|293569165|ref|ZP_06680471.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071] gi|294619739|ref|ZP_06699144.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679] gi|294623753|ref|ZP_06702581.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317] gi|257812868|gb|EEV41626.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933] gi|257816964|gb|EEV44292.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502] gi|257829478|gb|EEV56085.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408] gi|260075395|gb|EEW63701.1| tRNA modification GTPase mnmE [Enterococcus faecium C68] gi|291588134|gb|EFF19976.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071] gi|291594009|gb|EFF25478.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679] gi|291596707|gb|EFF27930.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317] gi|291604784|gb|EFF34266.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162] Length = 465 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ L LL+ A + I++LNK Sbjct: 285 IRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATSGLKRIILLNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + E KL+ E F +S K G D Sbjct: 343 TDL--PAQL--EQEKLKKLIENEPVFSISVAKNDGLD 375 >gi|304311812|ref|YP_003811410.1| GTP-binding protein [gamma proteobacterium HdN1] gi|301797545|emb|CBL45765.1| GTP-binding protein [gamma proteobacterium HdN1] Length = 474 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 8/161 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + +IV TR G + +DT GI Sbjct: 4 AVALVGRPNVGKSTLFNRLTKTRDAIVADMPGLTRDRKYGEARVGAHAFLVIDTGGITGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ LM S I+ AD+V +VD+ L L + + R L +++NKID Sbjct: 64 EEGIDSLMAEQSMLAIEEADLVFFIVDAKAGLTAGDEVLAQRLRVREKPLYVVVNKIDGQ 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC----DDVLN 180 + L AE + + + F +SA+ G G DDV Sbjct: 124 DSDEAL--AEFSR--LGLGDPFFISASHGRGVTQMIDDVFG 160 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 6/162 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL+NR +G + +V TTR + + + +DT G+ Sbjct: 180 IAVVGRPNVGKSTLINRMLGEERVVVFDMPGTTRDSIYIPYERRGQKYTLIDTAGVRKRG 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A +V LV+D+ + LL + + L++ LNK D Sbjct: 240 RVDEAVEKFSVIKTLQAIEDAHVVILVLDAREGIVDQDLHLLGFVLETGRSLLIALNKWD 299 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 + ++ + EI ++ F+ K +SA G G D+ Sbjct: 300 GMDDYQKSRVKVEIDRRMEFVSFAKIHFISALHGTGVGDLYG 341 >gi|257899265|ref|ZP_05678918.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15] gi|257837177|gb|EEV62251.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15] Length = 465 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ L LL+ A + I++LNK Sbjct: 285 IRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATSGLKRIILLNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + E NK + E F +S K G D Sbjct: 343 TDL--PAQL--EQEKLNKWIENEPVFSISVAKNDGLD 375 >gi|255325638|ref|ZP_05366735.1| ribosome-associated GTPase EngA [Corynebacterium tuberculostearicum SK141] gi|255297248|gb|EET76568.1| ribosome-associated GTPase EngA [Corynebacterium tuberculostearicum SK141] Length = 526 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR + + + + DT G Sbjct: 92 TVAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYVADWNGQRFLVQDTGGWDPN 151 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + R + ++ AD++ +VVD+ + + + + K +IL+ NK D Sbjct: 152 VKGIHGAIARQAEVAMETADVIVMVVDTKVGITATDEVMARRLQKSPVPVILVSNKFDSD 211 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + A++A + + VSA G G DVL+ + P P Sbjct: 212 N-----QYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRVFPEEP 254 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ + S+V + TT V +V E F+DT G + Sbjct: 266 VALVGKPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRKKV 325 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ +++D+ E+ +L + + L++ NK Sbjct: 326 KNAQGHEYYASLRTR-GVIDAAEVCIMLIDASEEISEQDQRVLNMVLEAGKALVIAFNKW 384 Query: 141 DCVKPER 147 D + +R Sbjct: 385 DLMDEDR 391 >gi|24379659|ref|NP_721614.1| tRNA modification GTPase TrmE [Streptococcus mutans UA159] gi|290580346|ref|YP_003484738.1| putative thiophene and furan degradation protein [Streptococcus mutans NN2025] gi|32171828|sp|Q8DTT8|MNME_STRMU RecName: Full=tRNA modification GTPase mnmE gi|24377614|gb|AAN58920.1|AE014960_1 putative thiophene and furan degradation protein [Streptococcus mutans UA159] gi|254997245|dbj|BAH87846.1| putative thiophene and furan degradation protein [Streptococcus mutans NN2025] Length = 455 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 219 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD+V LV++S +L LL EI++ S+RLIL LNK Sbjct: 279 IRETDDLVEKIGVERSKKALEEADLVLLVLNSAEKLTDQDRTLL-EISQNSNRLIL-LNK 336 Query: 140 IDCVKPERL 148 D PE++ Sbjct: 337 TDL--PEQI 343 >gi|205829166|sp|Q0BAQ4|MNME_BURCM RecName: Full=tRNA modification GTPase mnmE Length = 464 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 15/202 (7%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D ++ I +WS I+ AD+V ++DS + Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSEIERADVVLHLLDSRTGMT 320 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +++ ++ +LNK D +E A L + +SA +G G D Sbjct: 321 AD-DEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAGDLTEVH----LSAKRGDGID 375 Query: 177 DVLNYLCSTLPLAPWVYSADQI 198 + L L +A W A+ + Sbjct: 376 MLRAEL---LRIAGWQAGAEGV 394 >gi|12045187|ref|NP_072998.1| GTP-binding protein EngA [Mycoplasma genitalium G37] gi|255660444|ref|ZP_05405853.1| GTP-binding protein EngA [Mycoplasma genitalium G37] gi|1723150|sp|P47571|DER_MYCGE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3844909|gb|AAC71553.1| GTP-binding protein engA [Mycoplasma genitalium G37] gi|166078673|gb|ABY79291.1| GTP-binding protein engA [synthetic Mycoplasma genitalium JCVI-1.0] Length = 448 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 2/168 (1%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G TN GKSTL NR + ++IV+ TTR + GI + +I F+DT G+ Sbjct: 3 TVAIIGRTNVGKSTLFNRLIQKPMAIVSDTPNTTRDRIFGIGEWLKRKIAFIDTGGLIAK 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + +L+ + + A + +V +L + + K + K + +IL++NK + Sbjct: 63 QTPLQQLIALQVQAALSQAKAIIFLVSLQEQLNSDDFYVAKVLKKNKDKPVILVVNKAEN 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P+ E + L F + ++SA G G D+++ L L P Sbjct: 123 FNPKTAEETLKDYYSLGF-GRPVVISAAHGIGIGDLMDLLVKQNQLLP 169 >gi|332827207|gb|EGJ99981.1| tRNA modification GTPase mnmE [Dysgonomonas gadei ATCC BAA-286] Length = 463 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 17/191 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ ++ + +DT GI + Sbjct: 224 VAIIGETNAGKSTLLNLLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDTT 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILNKIDC 142 D + I ++ I+ A+I+ + D + +I DL ++I A ++ +LIL+ NK+D Sbjct: 284 DEIESIGIERTFKKIEQANIILWITDVGTADE-HIRDLAEKILPAIKNQKLILVFNKVDM 342 Query: 143 VKPER-----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + ER L + EI +++ +SA G +D+ + L + P + D Sbjct: 343 ISAERKDNKERLLKEEIPDRI-------FISAKYEQGTNDLESLLVKAANI-PEIGEQDI 394 Query: 198 ISDLPMFHFTA 208 I M H+ A Sbjct: 395 IV-TNMRHYAA 404 >gi|300812005|ref|ZP_07092461.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497031|gb|EFK32097.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 461 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 6/136 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLKTAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I AD++ L++D +EL LL+ A + + I++LNK Sbjct: 282 IHHTEDQVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRRLLELTAGK--KRIIVLNK 339 Query: 140 IDCVKPERLLEQAEIA 155 D + L AEIA Sbjct: 340 TDLGQK---LTAAEIA 352 >gi|28209869|ref|NP_780813.1| tRNA modification GTPase TrmE [Clostridium tetani E88] gi|32171803|sp|Q899S2|MNME_CLOTE RecName: Full=tRNA modification GTPase mnmE gi|28202304|gb|AAO34750.1| thiophene and furan oxidation protein thdF [Clostridium tetani E88] Length = 459 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 8/163 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V +VG N GKS+L+N + K +IVT TTR ++ ++ I +DT G Sbjct: 221 REGLDVVIVGKPNVGKSSLLNALLSEKRAIVTEIPGTTRDVIEEYINLDGIPIKIIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S I AD+V LV+DS +L +++++ I + + I +LNK Sbjct: 281 IRETEDLVEKIGVERSKEKINEADLVILVLDSSNKLNDEDYEIIEYI--KDKKYITLLNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D E + ++++ + ++ +SA G G +D+ Y+ Sbjct: 339 SDL---ESKINKSDLEDLKLY--NIIEISAKMGFGLEDLKEYI 376 >gi|77407969|ref|ZP_00784719.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1] gi|77173427|gb|EAO76546.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1] Length = 458 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L + LL E++K S+R++L LNK Sbjct: 282 IRDTDDIVEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLL-ELSKESNRIVL-LNK 339 Query: 140 IDCVKPERL 148 D P+++ Sbjct: 340 TDL--PQKI 346 >gi|307547060|ref|YP_003899539.1| tRNA modification GTPase TrmE [Halomonas elongata DSM 2581] gi|307219084|emb|CBV44354.1| tRNA modification GTPase TrmE [Halomonas elongata DSM 2581] Length = 456 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N +IVT TTR ++R + + +DT G+ + Sbjct: 220 SVVIAGRPNAGKSSLLNALTEQDTAIVTEIEGTTRDVLREHIHLDGMPLHVIDTAGLRDT 279 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 D+ K+ + +WS I+ AD V L+VD+ ++ + E +R SRL L+ NK+ Sbjct: 280 PDAVEKIGVARAWSEIEKADRVLLMVDATTTDALDPMSIWPEFVQRLADPSRLTLVRNKV 339 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D + L+ L +SA G G D++ +L Sbjct: 340 DTSQEPPGLD-------LSTATPIVRLSAKTGQGVDNLKEHL 374 >gi|257890523|ref|ZP_05670176.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,410] gi|257826883|gb|EEV53509.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,410] Length = 339 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 99 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 158 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ L LL+ A + I++LNK Sbjct: 159 IRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATSGLKRIILLNK 216 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + E KL+ E F +S K G D Sbjct: 217 TDL--PAQL--EQEKLKKLIENEPVFSISVAKNDGLD 249 >gi|205371772|sp|Q8CX52|MNME_SHEON RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 202 VQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIHLD 261 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + +DT G+ + D+ ++ I +W+ I AD V +VD V+ HD+ + Sbjct: 262 GMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFMVDGTTTTAVDPHDIWPDFIN 321 Query: 129 R---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 R + + +I NK D E E+ + + + +SA G G D++ +L S Sbjct: 322 RLPTNLGVTVIRNKADLTG-----ENLEMTEEKGY--SVYRISAKTGLGVDELKQHLKSL 374 Query: 186 L 186 + Sbjct: 375 M 375 >gi|220936472|ref|YP_002515371.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. HL-EbGR7] gi|219997782|gb|ACL74384.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. HL-EbGR7] Length = 446 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 50/84 (59%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKS+L+NR V + +IVTH TTR ++R VS + +DT G+ + D Sbjct: 222 IAGRPNAGKSSLLNRLVRREAAIVTHIPGTTRDVLRETVSLDGLPLHLVDTAGLRESDDP 281 Query: 87 YHKLMIRLSWSTIKHADIVCLVVD 110 + IR +W+ I+ AD V LVVD Sbjct: 282 VEQEGIRRAWAEIEAADAVLLVVD 305 >gi|261206911|ref|ZP_05921600.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6] gi|289567290|ref|ZP_06447669.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF] gi|294616665|ref|ZP_06696436.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636] gi|260078539|gb|EEW66241.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6] gi|289160909|gb|EFD08830.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF] gi|291590485|gb|EFF22223.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636] Length = 465 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ L LL+ A + I++LNK Sbjct: 285 IRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATSGLKRIILLNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + E KL+ E F +S K G D Sbjct: 343 TDL--PAQL--EQEKLKKLIENEPVFSISVAKNDGLD 375 >gi|257885581|ref|ZP_05665234.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501] gi|293553541|ref|ZP_06674168.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039] gi|257821437|gb|EEV48567.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501] gi|291602296|gb|EFF32521.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039] Length = 465 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ L LL+ A + I++LNK Sbjct: 285 IRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATSGLKRIILLNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + E KL+ E F +S K G D Sbjct: 343 TDL--PAQL--EQEKLKKLIENEPVFSISVAKNDGLD 375 >gi|71066697|ref|YP_265424.1| tRNA modification GTPase TrmE [Psychrobacter arcticus 273-4] gi|123647608|sp|Q4FPR8|MNME_PSYA2 RecName: Full=tRNA modification GTPase mnmE gi|71039682|gb|AAZ19990.1| tRNA modification GTPase trmE [Psychrobacter arcticus 273-4] Length = 478 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 15/177 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR ++ V + DT G+ + Sbjct: 233 VVLAGRPNAGKSSLLNRLAGQERAIVTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETE 292 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI------HDLLKEIAKRSSRLILILN 138 D+ ++ I + + I ADI+ +V D +L+ I L E+ + + L++I N Sbjct: 293 DTVERIGIERARTAITQADILLMVYDVTCDLEEEITPLQLAEQLFGELPE-AKCLLIIAN 351 Query: 139 KIDCV-----KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 K D + K + Q EI N+ + VS G G DD++ LC+ + P Sbjct: 352 KSDLLNHNSSKGMTSISQEEIYNRGY---EQVNVSCETGAGIDDLVETLCAKVGFHP 405 >gi|69247494|ref|ZP_00604364.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Enterococcus faecium DO] gi|68194819|gb|EAN09294.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Enterococcus faecium DO] Length = 494 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 254 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 313 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ L LL+ A + I++LNK Sbjct: 314 IRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATSGLKRIILLNK 371 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + E KL+ E F +S K G D Sbjct: 372 TDL--PAQL--EQEKLKKLIENEPVFSISVAKNDGLD 404 >gi|319744919|gb|EFV97251.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ATCC 13813] Length = 469 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 233 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 292 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L + LL E++K S+R++L LNK Sbjct: 293 IRDTDDIVEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLL-ELSKESNRIVL-LNK 350 Query: 140 IDCVKPERL 148 D P+++ Sbjct: 351 TDL--PQKI 357 >gi|319949180|ref|ZP_08023269.1| GTP-binding protein Der [Dietzia cinnamea P4] gi|319437166|gb|EFV92197.1| GTP-binding protein Der [Dietzia cinnamea P4] Length = 488 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V + DT G Sbjct: 54 TVAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYEALWNGRTFMVQDTGGWEQD 113 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H+ + + + + AD++ LV D + + + + + + +IL +NK+D Sbjct: 114 AKGMHRSIAQQAEIAMGTADLIVLVCDGTVGITAADETVARSLRRSDTPVILAVNKVDSD 173 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E LE AE + +++ + +SA G G D+L+ + LP Sbjct: 174 KAE--LEAAEFWG--LGLDQPYAISAAHGRGTADLLDEILRQLP 213 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G ++V + TT V +V F+DT G+ Sbjct: 228 VALVGKPNVGKSSLLNKLTGEDRAVVDNVAGTTVDPVDSLVELGGRTWRFVDTAGLRRKV 287 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + Y L R I+ A++V L++D+ + ++ +A L++ N Sbjct: 288 NQAYGHEYYASLRTR---GAIEAAEVVVLLLDASEPITEQDLRVISMVADAGRALVIAFN 344 Query: 139 KIDCVKPER 147 K D V +R Sbjct: 345 KWDLVDEDR 353 >gi|313124784|ref|YP_004035043.1| tRNA modification GTPase mnme [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281347|gb|ADQ62066.1| tRNA modification GTPase mnmE [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 461 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 6/136 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLKTAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I AD++ L++D +EL LL+ A + + I++LNK Sbjct: 282 IHHTEDQVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRRLLELTAGK--KRIIVLNK 339 Query: 140 IDCVKPERLLEQAEIA 155 D + L AEIA Sbjct: 340 TDLGQK---LTAAEIA 352 >gi|289167974|ref|YP_003446243.1| tRNA modification GTPase TrmE [Streptococcus mitis B6] gi|288907541|emb|CBJ22378.1| tRNA modification GTPase TrmE [Streptococcus mitis B6] Length = 457 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L V LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASESLTVQDRQLL-EISQETNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ L+ I Sbjct: 339 TDL--PEA-IETSELPEDLIRI 357 >gi|148979611|ref|ZP_01815616.1| GTP-binding protein EngA [Vibrionales bacterium SWAT-3] gi|145961696|gb|EDK26993.1| GTP-binding protein EngA [Vibrionales bacterium SWAT-3] Length = 493 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 19/189 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAQLGEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ M S + I AD+V +VD L V I L+++ K S +L++NK+ Sbjct: 64 EEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPS---MLVVNKV 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS--ADQ- 197 D + P + A + +E + ++A G G +++ L L P+ + A+Q Sbjct: 121 DGIDP----DAASADFWQLGVEDMYQIAAAHGRGVTALID-----LALNPFAEALKAEQG 171 Query: 198 -ISDLPMFH 205 ISDL F Sbjct: 172 KISDLTEFE 180 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A++G N GKSTL NR +G + +V TTR + +S E + V +DT G+ Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMSRDEREYVLIDTAGVRRRK 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N ++ K + + ++ A++V LV+D+ + LL +++ +NK D Sbjct: 268 NINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWD 327 Query: 142 CVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + ER+ + E+ +L F++ + +SA G G Sbjct: 328 GLDNDVKERV--KKELDRRLGFVDFARIHFISALHGTGV 364 >gi|22537039|ref|NP_687890.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R] gi|76788077|ref|YP_329621.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909] gi|77410695|ref|ZP_00787054.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111] gi|32171818|sp|Q8CX13|MNME_STRA5 RecName: Full=tRNA modification GTPase mnmE gi|123601915|sp|Q3K1I2|MNME_STRA1 RecName: Full=tRNA modification GTPase mnmE gi|22533896|gb|AAM99762.1|AE014231_20 tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R] gi|76563134|gb|ABA45718.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909] gi|77163231|gb|EAO74183.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111] Length = 458 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L + LL E++K S+R++L LNK Sbjct: 282 IRDTDDIVEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLL-ELSKESNRIVL-LNK 339 Query: 140 IDCVKPERL 148 D P+++ Sbjct: 340 TDL--PQKI 346 >gi|24371603|ref|NP_715645.1| tRNA modification GTPase TrmE [Shewanella oneidensis MR-1] gi|24345353|gb|AAN53090.1|AE015452_3 tRNA modification GTPase TrmE [Shewanella oneidensis MR-1] Length = 457 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 222 VVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D+ ++ I +W+ I AD V +VD V+ HD+ + R + + +I NK D Sbjct: 282 DTVEQIGIERAWNEINSADRVLFMVDGTTTTAVDPHDIWPDFINRLPTNLGVTVIRNKAD 341 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E E+ + + + +SA G G D++ +L S + Sbjct: 342 LTG-----ENLEMTEEKGY--SVYRISAKTGLGVDELKQHLKSLM 379 >gi|242278542|ref|YP_002990671.1| tRNA modification GTPase TrmE [Desulfovibrio salexigens DSM 2638] gi|242121436|gb|ACS79132.1| tRNA modification GTPase TrmE [Desulfovibrio salexigens DSM 2638] Length = 483 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 12/156 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 G L G NAGKS+L+N +G +IVT TTR + ++ Q+ +DT G+ Sbjct: 245 GGLAVLSGKVNAGKSSLLNALLGRNRAIVTDIPGTTRDFIEETLNLDGLQVRVVDTAGLR 304 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + + AD+V L++D + + DL + A + + + ++NK D Sbjct: 305 ETSDAVELAGVDMGRDLASQADLVLLIIDGSKPFA--LADLDPQFADMADKCLAVINKSD 362 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMV---SATKGHG 174 LEQA+ + ++ E + V SA KG G Sbjct: 363 -------LEQADPSPAVIMRESGYEVVEISAKKGQG 391 >gi|134295837|ref|YP_001119572.1| small GTP-binding protein [Burkholderia vietnamiensis G4] gi|134138994|gb|ABO54737.1| GTP-binding protein HflX [Burkholderia vietnamiensis G4] Length = 396 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++D Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVND 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADTVRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|15807299|ref|NP_296029.1| GTP-binding protein EngA [Deinococcus radiodurans R1] gi|26006746|sp|Q9RS19|DER_DEIRA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|6460115|gb|AAF11852.1|AE002062_5 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 438 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 5/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L NR +G + ++V TR G++ +I +DT G+++ Sbjct: 4 VAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEGLMLYHNHRITLIDTGGLWSGD 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + W+ ++ A V V+D L +++ + + +I+ NKID K Sbjct: 64 EWEQAIREKAEWA-MEGAQAVIFVLDPREGLSAADYEVADWLRRLGKPVIVTANKIDSQK 122 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L AE+ L F + +SA G DD+++ + LP Sbjct: 123 HEPYL--AELWG-LGFGDPV-AISAEHARGLDDLMDRVMKYLP 161 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++L+G N GKS+L+N + +IV TTR + + V +DT GI Sbjct: 175 ISLIGRPNVGKSSLLNAITQSDRAIVADLPGTTRDSLDVEWDYGGQRFVLVDTAGIRKKP 234 Query: 85 DSY-HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNKID 141 D+ I+ S + I+ +D++ LVV++ + H+L L +A S + +I+++NK D Sbjct: 235 DTAIEDFAIQRSQAAIERSDVIWLVVNA---TDIGDHELKLANLAYDSGKPVIVVVNKWD 291 Query: 142 CVKPERLLEQAEIANK----LVFIEKTFMVSATKGHGCDDVL 179 V L + N+ + F + + SA +G D+L Sbjct: 292 LVPDAELKSTEKDLNQKLHHISFAPRVY-TSAINDYGIHDML 332 >gi|256830922|ref|YP_003159650.1| tRNA modification GTPase TrmE [Desulfomicrobium baculatum DSM 4028] gi|256580098|gb|ACU91234.1| tRNA modification GTPase TrmE [Desulfomicrobium baculatum DSM 4028] Length = 457 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+N +G +IVT TTR + V + +DT G+ A Sbjct: 225 VVLAGQVNAGKSSLMNAILGINRAIVTDIPGTTRDYLEESVQIDGLPVRLVDTAGLRAAL 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 DS L I S + AD+V LV+DS EL DL ++A + L+++ NK+D V Sbjct: 285 DSVELLGIERSRELLARADLVLLVIDS--ELGPGAEDL--DLAAETENLLVVANKMDLVA 340 Query: 145 PE 146 E Sbjct: 341 GE 342 >gi|219670950|ref|YP_002461385.1| tRNA modification GTPase TrmE [Desulfitobacterium hafniense DCB-2] gi|219541210|gb|ACL22949.1| tRNA modification GTPase TrmE [Desulfitobacterium hafniense DCB-2] Length = 459 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 74/133 (55%), Gaps = 10/133 (7%) Query: 18 DNSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D S++G + +VG N GKS+L+N +G + +IVT TTR +R V+ Sbjct: 208 DGSKTGRILREGMLTVIVGQPNVGKSSLLNALMGEERAIVTDIPGTTRDEIRESVTIGGI 267 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + +DT G+ ++D KL I SW ++ A+++ L++ + +ELK + LK + + Sbjct: 268 LLQLVDTAGLRESEDLVEKLGIERSWKAMEKAELILLIIQAGQELKA---EELKILNQYD 324 Query: 131 SRLILILNKIDCV 143 +I+++NK+D + Sbjct: 325 QSVIVLINKMDLL 337 >gi|332886080|gb|EGK06324.1| tRNA modification GTPase TrmE [Dysgonomonas mossii DSM 22836] Length = 463 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 94/185 (50%), Gaps = 15/185 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG VA++G TNAGKSTL+N + + +IV+ TTR ++ ++ + +DT G Sbjct: 219 KSGIPVAIIGETNAGKSTLLNLLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR------SSRL 133 I + D L I ++ I+ A+IV V D I++ ++E++++ +L Sbjct: 279 IRDTHDEIESLGIERTFKKIEQANIVLWVADCE-----TINEHIEELSQKILPVVGDRKL 333 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +L+ NK+D + ER E+ ++ L I + +SA G + + + L T + P + Sbjct: 334 VLVFNKVDIISAERKAEKEKLL--LDKIPERVFISAKYEQGTNQLEDLLVKTANI-PEIS 390 Query: 194 SADQI 198 D I Sbjct: 391 EQDII 395 >gi|213581531|ref|ZP_03363357.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 162 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 9/168 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 P +QA + + + + + ++A+ G G +L ++ L PW Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPW 162 >gi|77406399|ref|ZP_00783459.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B] gi|77174990|gb|EAO77799.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B] Length = 458 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L + LL E++K S+R++L LNK Sbjct: 282 IRDTDDIVEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLL-ELSKESNRIVL-LNK 339 Query: 140 IDCVKPERL 148 D P+++ Sbjct: 340 TDL--PQKI 346 >gi|314940137|ref|ZP_07847317.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04] gi|314943032|ref|ZP_07849836.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C] gi|314948150|ref|ZP_07851546.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082] gi|314953436|ref|ZP_07856354.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A] gi|314993825|ref|ZP_07859161.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B] gi|314998150|ref|ZP_07863032.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01] gi|313587862|gb|EFR66707.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01] gi|313591716|gb|EFR70561.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B] gi|313594539|gb|EFR73384.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A] gi|313598232|gb|EFR77077.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C] gi|313640642|gb|EFS05222.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04] gi|313645404|gb|EFS09984.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082] Length = 485 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 245 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 304 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ L LL+ A + I++LNK Sbjct: 305 IRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATSGLKRIILLNK 362 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + E KL+ E F +S K G D Sbjct: 363 TDL--PAQL--EQEKLKKLIENEPVFSISVAKNDGLD 395 >gi|305681382|ref|ZP_07404189.1| ribosome-associated GTPase EngA [Corynebacterium matruchotii ATCC 14266] gi|305659587|gb|EFM49087.1| ribosome-associated GTPase EngA [Corynebacterium matruchotii ATCC 14266] Length = 484 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V +VG N GKSTLVNRF+G + ++V TR + I + DT G Sbjct: 52 TVTIVGRPNVGKSTLVNRFLGRREAVVEDFPGVTRDRISYIADWGGQRFWVQDTGGWDPN 111 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + R + + ++ AD++ +VVD+ + + +++ S +IL+ NK D Sbjct: 112 VKGIHGAIARQAETAMETADVIVMVVDTKVGITETDAVMARKLHGASVPVILVANKFDSD 171 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++ A++A + + VSA G G DVL+ + + P P Sbjct: 172 -----MQYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRSFPDQP 214 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ G + S+V TT V +V F+DT G + Sbjct: 226 VALVGKPNVGKSSLLNKIAGEERSVVDDVAGTTVDPVDSLVQLDGHLWKFIDTAGLRKKV 285 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ ++DS + +L I L+L+ NK Sbjct: 286 KNAQGHEYYASLRTR-GVIDAAEVCLFMIDSSEPVSEQDQRVLSMILDAGKALVLVFNKW 344 Query: 141 DCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 D + +R E + +I +L I + +SA G + Y+ L Sbjct: 345 DLMTEDRRWELERDIEQQLAHIPWVRRVNISAKTGRALQKLEPYMEEAL 393 >gi|192291246|ref|YP_001991851.1| GTP-binding proten HflX [Rhodopseudomonas palustris TIE-1] gi|192284995|gb|ACF01376.1| GTP-binding proten HflX [Rhodopseudomonas palustris TIE-1] Length = 455 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R I + + DT G + Sbjct: 224 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRAIQLPHGGKAMLSDTVGFISN 283 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA--KRSSRLILIL 137 + R + + AD++ V D SH + + HD +L+++ S R++ + Sbjct: 284 LPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQQHDVDNVLRQLGVDAASGRIVEVW 343 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NKID +PE+ E IA + +VSA G G D++L Sbjct: 344 NKIDRFEPEQRDELKNIAARRPEDHPCLLVSAVSGEGVDELL 385 >gi|190171182|gb|ACE63661.1| ThdF [Enterobacter amnigenus] Length = 439 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWHEIEQADRVLFMVDGTTTSAVDPADIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L V +SA G G +D+ N+L Sbjct: 313 IARLPAKLPITVVRNKADMTGETLGLSD-------VNGHSLIRLSARTGEGIEDLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|296105488|ref|YP_003615634.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059947|gb|ADF64685.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 454 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W I+ AD V +VD V+ ++ + IA+ ++L ++ NK D Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E I++ V +SA G G DD+ N+L ++ Sbjct: 339 VTG-----ETLGISD--VNGHSLIRLSARTGEGVDDLRNHLKQSM 376 >gi|206895297|ref|YP_002247145.1| ribosome-associated GTPase EngA [Coprothermobacter proteolyticus DSM 5265] gi|206737914|gb|ACI16992.1| ribosome-associated GTPase EngA [Coprothermobacter proteolyticus DSM 5265] Length = 425 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 14/175 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++GA N GKS+L NR VG + ++ + TR + I + +DT G++ + Sbjct: 6 IIGAPNVGKSSLFNRLVGGRKALTYDQPGVTRDYLSHICEWRGRYFELVDTGGLYRGEQD 65 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 R S + AD+V VVD+ L +D+ +++ K +I++ NK+D + PE Sbjct: 66 LESFWKR-SLEIAQDADVVLFVVDASEHLSSVEYDIAQDLRKMGKEVIVVGNKMDLL-PE 123 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 ++ N + +K VSAT G D+L+ + W Y ++ D+ Sbjct: 124 GF--NPDLYN--LGFDKVQFVSATTGRNSGDLLDLM--------WKYLGEEDQDI 166 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+++G TNAGKSTL+NR +G + +V+ TT + ++ K+ + DTPG+ K Sbjct: 175 VSVIGRTNAGKSTLMNRLLGKERVLVSEMPGTTLDFITETINVKDMVVEVTDTPGL--RK 232 Query: 85 DSYHKLMI-------RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 +L + RL + ++ ++ V+D+ L +++ + I +L Sbjct: 233 GDLRRLSVPEMLAVKRLE-NRLRKQQVLIHVIDASVGLTSLDESVIRIAEEEGIGYIAVL 291 Query: 138 NKIDCV----KPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYL 182 NKID K E +L +A +K ++++ ++ SA + + D V + L Sbjct: 292 NKIDLAEDPRKAESILTEA-FLDKFPWVDRKAVIAASAEENYNVDKVTDAL 341 >gi|227821866|ref|YP_002825836.1| putative GTP-binding protein [Sinorhizobium fredii NGR234] gi|227340865|gb|ACP25083.1| putative GTP-binding protein [Sinorhizobium fredii NGR234] Length = 440 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 27/193 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 206 VALVGYTNAGKSTLFNRMTGAGVLAEDMLFATLDPTLRRLKLPHGRMVILSDTVGFISDL 265 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA-------KRSSRLILI 136 ++ R + + AD++ V D S + + D+L+ +A + S R++ + Sbjct: 266 PTHLVAAFRATLEEVLEADLILHVRDLSDPDNQAQASDVLRILADLGIDEKEGSERIVEV 325 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL----------CST- 185 NKID + PE + +A + K + T VSA G G DD+L + C+ Sbjct: 326 WNKIDRLAPE--VREA-LVKKAASADNTVAVSAITGEGVDDLLGEIGGRLSGVMTECTVA 382 Query: 186 -----LPLAPWVY 193 L L PW+Y Sbjct: 383 LGLDQLQLLPWIY 395 >gi|193212091|ref|YP_001998044.1| GTP-binding protein EngA [Chlorobaculum parvum NCIB 8327] gi|238692612|sp|B3QLF4|DER_CHLP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193085568|gb|ACF10844.1| small GTP-binding protein [Chlorobaculum parvum NCIB 8327] Length = 438 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 12/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 +ALVG N GKSTL NR + K +IV T V R I G K Q + +DT G Sbjct: 5 IALVGRPNVGKSTLFNRILRQKSAIVDPTPGVTRDRHINPGEWQGK--QFLLMDTGGYAP 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE---LKVNIHDLLKEIAKRSSRLILILNK 139 DS M+ + I AD + +VD+ L ++I +LK+ ++ +NK Sbjct: 63 ENDSLSVAMLDQTMRAIADADAIIFMVDARSGLTYLDLDIAKILKQTFS-DKKIFFAINK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D P+ LE A + + F E +++SA G G D+L+ + TLP Sbjct: 122 VD--NPQLALEAAAMV-RSGFTE-PYLISARDGGGVADMLDDILETLP 165 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 7/127 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A++G N GKS+LVN +G IV+ TTR + ++ + + +DT G+ Sbjct: 181 LAVLGRPNVGKSSLVNALLGTDRQIVSDVPGTTRDAIDSVLKRNGKEYILIDTAGLRKRT 240 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + Y+ + + I+ + +++D+ L+ ++ +R +++++NK Sbjct: 241 KIDPGIEYYSSL--RTERAIERCQVALVLLDAQLGLESQDMKIIHMAIERKKGVLILVNK 298 Query: 140 IDCVKPE 146 D V+ + Sbjct: 299 WDLVEKD 305 >gi|90410877|ref|ZP_01218891.1| GTP-binding protein EngA [Photobacterium profundum 3TCK] gi|90328090|gb|EAS44401.1| GTP-binding protein EngA [Photobacterium profundum 3TCK] Length = 493 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 59/123 (47%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L V+ + K + R L++NKID + Sbjct: 64 EEGVETKMAEQSLAAIEEADVVLFLVDGRAGLTVSDEAIAKHLRSREKPTFLVVNKIDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 207 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGVRRRK 266 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N + K + + ++ A++V L++D+ + LL + L+L +NK D Sbjct: 267 NMNQAVEKFSVIQTLKAVEDANVVLLIIDARENISDQDLSLLGFVLNSGRSLVLAVNKWD 326 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + ++E+ +L FI+ + +SA G G Sbjct: 327 GLDNEVKERVKSELDRRLGFIDFARIHFISALHGTGV 363 >gi|314967527|gb|EFT11626.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA1] Length = 456 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 4/180 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F N+ D +++ VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 7 FRNDPSDDIEEALPKPVVAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEW 66 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 Q V +DT G + ++ + I AD V VVD++ +++ + Sbjct: 67 SGRQFVLVDTGGWASDASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLR 126 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +++ NK+D + E E A + N + + + VSA G G D+L+ L + LP Sbjct: 127 QSRKPVVVAANKVDNARGES--EAATMWN--LGLGEPRPVSAMHGRGSGDLLDALIAVLP 182 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA+VG N GKS+L+NR +V+ TT V +V+ + F+DT G+ Sbjct: 197 VAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRV 256 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L + + I+ A++ +V+D+ + +L + +++ NK D Sbjct: 257 KEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDLRILTMVENAGRAMVIAYNKWD 316 >gi|39935664|ref|NP_947940.1| GTP-binding protein HSR1-related [Rhodopseudomonas palustris CGA009] gi|39649517|emb|CAE28039.1| GTP binding protein-like [Rhodopseudomonas palustris CGA009] Length = 424 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R I + + DT G + Sbjct: 193 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRAIQLPHGGKAMLSDTVGFISN 252 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA--KRSSRLILIL 137 + R + + AD++ V D SH + + HD +L+++ S R++ + Sbjct: 253 LPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQQHDVDNVLRQLGVDAASGRIVEVW 312 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NKID +PE+ E IA + +VSA G G D++L Sbjct: 313 NKIDRFEPEQRDELKNIAARRPEDHPCLLVSAVSGEGVDELL 354 >gi|116334862|ref|YP_796389.1| tRNA modification GTPase TrmE [Lactobacillus brevis ATCC 367] gi|122268459|sp|Q03N64|MNME_LACBA RecName: Full=tRNA modification GTPase mnmE gi|116100209|gb|ABJ65358.1| tRNA modification GTPase, TrmE [Lactobacillus brevis ATCC 367] Length = 464 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 3/149 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 223 REGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVKGVPLKLIDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S I AD+V LV+++ L LL A + ++ ILILNK Sbjct: 283 IRDTTDKVEKIGVERSRKAINTADLVMLVLNASEPLTAEDEALLT--ATKDTQRILILNK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVS 168 D L ++A IE + + S Sbjct: 341 TDLPLQLDLAAVRQVAGDSPIIETSILQS 369 >gi|111115337|ref|YP_709955.1| GTP-binding protein EngA [Borrelia afzelii PKo] gi|122956350|sp|Q0SMZ9|DER_BORAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110890611|gb|ABH01779.1| GTP-binding protein [Borrelia afzelii PKo] Length = 433 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI + TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + + +++ + K S+++IL+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDVN-EILLEDYQIIERLRKYSNKVILVLNKVDAKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KEFL---AHEFHNLGF-KRCFLVSAVHCRGIAKLRDFL 159 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G ++SIV+ K TTR ++ ++ +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEISIVSDKPGTTRDFIKTKLTRNGKVFEIIDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D EL + + K+ +I++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYVTKKGKGIIIVFSK 293 Query: 140 IDCVKPER 147 D VK + Sbjct: 294 WDLVKESK 301 >gi|260598897|ref|YP_003211468.1| GTP-binding protein Der [Cronobacter turicensis z3032] gi|260218074|emb|CBA32819.1| GTP-binding protein engA [Cronobacter turicensis z3032] Length = 492 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 9/173 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI A Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGA 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSRQKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 P +QA + + + ++A+ G G +L ++ L PW+ D Sbjct: 124 DP----DQAVADFYSLGLGEIHPIAASHGRGVTSLLEHV-----LVPWMDDVD 167 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + + V +DT G+ Sbjct: 207 LAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREFVLIDTAGVRKRG 266 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 267 KITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 326 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E E E + +L FI+ + +SA G G ++ Sbjct: 327 GLSQEVKDEVKETLDYRLGFIDFARVHFISALHGSGVGNLF 367 >gi|256027561|ref|ZP_05441395.1| tRNA modification GTPase TrmE [Fusobacterium sp. D11] gi|289765520|ref|ZP_06524898.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11] gi|289717075|gb|EFD81087.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11] Length = 455 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 15/158 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D RE+ I+D++ + ++I ILNKID Sbjct: 283 IIENIGVEKSKELINSADLILYVIDISREIDEEDFRIYDII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K L +K IEK +SA G D++ N Sbjct: 338 KKDIDL-------SKFPKIEKWVEISALSKIGIDNLEN 368 >gi|297626315|ref|YP_003688078.1| GTP binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922080|emb|CBL56648.1| GTP binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 449 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 4/171 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q S VA+VG N GKSTLVNR +G + ++V TR V + + V +D Sbjct: 8 QAQSTRPVVAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYDANWAGREFVLVD 67 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 T G + + + I+ AD V VVD+ L ++K + + ++L Sbjct: 68 TGGWIAKAEGMSAHIAEQAEMAIQLADAVLFVVDAKVGLTDEDEAVVKVLRRSGKPVVLA 127 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D ER+ +A +L E + VSA G G D+L+ L LP Sbjct: 128 ANKVDD---ERVEAEASSLWQLGLGEP-YPVSALHGRGSGDLLDALVKVLP 174 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VA+VG N GKS+L+NR A+ S+V+ TT V +V+ +DT GI Sbjct: 190 VAIVGKPNVGKSSLLNRLASAQRSVVSDVSGTTVDPVDELVTIAGEPFRLIDTAGIRKRV 249 Query: 82 -NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A S + +R + I+ +++ +V+D+ + +L + + +++ NK Sbjct: 250 KEASGSEYYAWLRTQ-AAIERSEVCVVVIDASEPISDQDLKILSSVEEAGRAMVVAFNKW 308 Query: 141 DCVKPER 147 D ER Sbjct: 309 DLTDEER 315 >gi|167562556|ref|ZP_02355472.1| GTP-binding protein HflX [Burkholderia oklahomensis EO147] gi|167569738|ref|ZP_02362612.1| GTP-binding protein HflX [Burkholderia oklahomensis C6786] Length = 392 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 22/182 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHHTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ +++ Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNE 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI S R IL+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADSIRQILVFNKIDAV-PELEARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 Query: 177 DV 178 + Sbjct: 354 SL 355 >gi|301028501|ref|ZP_07191740.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1] gi|299878448|gb|EFI86659.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1] Length = 454 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N V I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHVLIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|90415379|ref|ZP_01223313.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2207] gi|90332702|gb|EAS47872.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2207] Length = 454 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 15/179 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G NAGKS+L+N G +IVT K TTR ++R ++ + +DT + ++ Sbjct: 218 TVVLAGKPNAGKSSLLNALAGRDAAIVTPKAGTTRDVLRETITLDGMPLHIVDTARLRDS 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 D IR +W I+ AD + +VD++ ++ + E R + ++LNK Sbjct: 278 DDEIELEGIRRAWLEIEQADQLLFLVDANESDNPDLAAIWPEYFARYGGAKQPITVVLNK 337 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL---APWVYSA 195 ID E + V F +SA G D ++ +L S++ + V+SA Sbjct: 338 ID--------ESGHQPGRQVGDANNFAISAKHKTGIDQLVAFLQSSMGFDERSEGVFSA 388 >gi|255014874|ref|ZP_05287000.1| GTP-binding protein EngA [Bacteroides sp. 2_1_7] gi|256840958|ref|ZP_05546465.1| ribosome-associated GTPase EngA [Parabacteroides sp. D13] gi|298375727|ref|ZP_06985683.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_19] gi|256736801|gb|EEU50128.1| ribosome-associated GTPase EngA [Parabacteroides sp. D13] gi|298266764|gb|EFI08421.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_19] Length = 437 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR G + +IV + TTR G V + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILILNK 139 +D + + + + I+ AD++ VVD I DL E+A +R R +I++ NK Sbjct: 65 EDVFEEEINKQVKVAIEEADVILFVVDVLN----GITDLDMEVAQILRRCKRPVIVVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D L A + F +SA G D+L+ + +TLP Sbjct: 121 ADNYD----LHPASAEFYSFGLGDPFCISAINGSYTGDLLDKIVATLP 164 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A++G NAGKS+L+N F+G IVT TTR + ++ +DT GI Sbjct: 178 IAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKKG 237 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ ++ S I+++D+ L++D+ R ++ ++ + K L++ +NK Sbjct: 238 KVNEDLEYYSVI--RSIRAIENSDVCVLMLDATRGIESQDMNIFSLVQKNKKGLVVCVNK 295 Query: 140 IDCVK 144 D ++ Sbjct: 296 WDLIE 300 >gi|192361438|ref|YP_001984273.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107] gi|190687603|gb|ACE85281.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107] Length = 455 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 V+D R V + G NAGKS+L+N G + +IVT TTR ++R + + + Sbjct: 212 LVRDGMR---VVIAGRPNAGKSSLLNALSGRESAIVTPIEGTTRDVLREHIHIEGMPLHI 268 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SS 131 +DT G+ ++ D ++ I+ +WS I+ AD V L+VDS + + + E + Sbjct: 269 IDTAGLRDSPDEVEQIGIQRAWSEIQQADRVLLLVDSRHTAETDPRLIWPEFVDKLDDPH 328 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 ++ L+ NKID EQA + + +SA G G D + ++L Sbjct: 329 KITLVRNKIDLSG-----EQAGLFEN-TRGQDYLGISAATGSGMDALKDHL 373 >gi|284929084|ref|YP_003421606.1| ribosome-associated GTPase EngA [cyanobacterium UCYN-A] gi|284809543|gb|ADB95248.1| ribosome-associated GTPase EngA [cyanobacterium UCYN-A] Length = 452 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V++VG N GKS+L+N F+G K +IV+ TTR ++ IV K +DT GI K Sbjct: 179 VSIVGRPNVGKSSLLNAFLGEKRAIVSPIAGTTRDVIDTIVERKGKVYRLVDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ AD+V LV+D+ + L I I+++NK D Sbjct: 239 NVEYGAEFFSINRAFKAIRRADVVLLVIDAIDGVTEQDIKLADRIIDEGRSAIIVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V+ + + + N+L F+E +SA G + + Sbjct: 299 AVEKDAYTIYSYKKNVMNRLYFMEWANLIFISAKSGQRIEKIF 341 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 4/177 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFN 82 VA++G N GKSTLVNR + +IV + TR V + + +DT G +FN Sbjct: 5 IVAVIGRPNVGKSTLVNRLAKNRQAIVHDEPGITRDRVYRQAFWRTHDFLVVDTGGLVFN 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + L+ + + + A + VVD +++ + ++ ++L +NK C Sbjct: 65 DNTEFLPLIREQAMTALSEASVAVFVVDGQLGPTTGDYEIGNWLRQQKVPVLLAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 PE L QA +L E + +S G+G + L+ L LP + ++ ++I+ Sbjct: 123 ESPEHGLIQAAQFWELGLGE-PYPISGIHGNGTGEFLDKLILHLPSSNKMFDPEEIN 178 >gi|254514003|ref|ZP_05126064.1| GTP-binding protein EngA [gamma proteobacterium NOR5-3] gi|219676246|gb|EED32611.1| GTP-binding protein EngA [gamma proteobacterium NOR5-3] Length = 474 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 6/171 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E D Q+ VA+VG N GKSTLVNR +G +V + TTR V S + Sbjct: 166 EADDDAQEEQGGTRVAVVGRPNVGKSTLVNRILGEDRVVVYDQPGTTRDSVYINFSREGR 225 Query: 71 QIVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 +DT G+ N +++ K I + S I A++V L+VD L LL Sbjct: 226 PYTLIDTAGVRRRKNVREAVEKFSIIKTLSAISDANVVVLLVDGQEGLVDQDLHLLGNCL 285 Query: 128 KRSSRLILILNKIDCVKPERLLE-QAEIANKLVFIEKTFM--VSATKGHGC 175 + L+L +NK D + P++ ++E+ +L F++ M +SA G G Sbjct: 286 EAGRALVLAVNKWDGLDPDQKDAIRSELDRRLRFVDFADMHFISALHGSGV 336 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V + TR G ++ + +DT G+ Sbjct: 4 SIALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGRSEDRAFIVIDTGGVSGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I AD+V L+VD+ L L++ + ++S L++NKID Sbjct: 64 EEGIDAAMAEQSLLAIDEADVVLLLVDAKDGLNPVDVQLVQYLRQKSRDFHLVVNKIDGR 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 P+ + + I ++A+ G G ++ + ++P+ Sbjct: 124 DPDVAISDFHS----LGIASMHAIAASHGRGVRQMIETVLESVPI 164 >gi|34541718|ref|NP_906197.1| GTP-binding protein EngA [Porphyromonas gingivalis W83] gi|188994055|ref|YP_001928307.1| GTP-binding protein EngA [Porphyromonas gingivalis ATCC 33277] gi|41017000|sp|Q7MT48|DER_PORGI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|34398036|gb|AAQ67096.1| GTP-binding protein, Era/ThdF family [Porphyromonas gingivalis W83] gi|188593735|dbj|BAG32710.1| GTP-binding protein EngA [Porphyromonas gingivalis ATCC 33277] Length = 437 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 7/168 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR ++ +IV + TTR G V + +DT G + Sbjct: 2 GALVAIVGRPNVGKSTLFNRLTQSRQAIVAEEAGTTRDRQYGRVHWNGREFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 N++D + + + + + ++ AD+V V D+ + ++ + + EI +RS + +I++ NK Sbjct: 62 VNSEDVFEEEINKQVYIAVEEADVVLFVADNQTGV-TSLDEQVAEILRRSKKPVIVVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D E +E + + + ++A G G D+L+ + LP Sbjct: 121 VD--NTEDHYSASEFYS--FGLGDPYCIAAVSGSGTGDLLDRVMELLP 164 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A+VG NAGKS+L+N F+G IVT TTR + ++ +DT GI Sbjct: 179 IAIVGRPNAGKSSLLNAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKRG 238 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ ++ S I+++D+ L++D+ R ++ ++ + I + S L++ +NK Sbjct: 239 KVNEDLEYYSVI--RSIRAIENSDVCVLMLDATRGVESQDLNIFQIIQRNSKGLVVCINK 296 Query: 140 IDCVK 144 D V+ Sbjct: 297 WDLVE 301 >gi|18310737|ref|NP_562671.1| GTP-binding protein EngA [Clostridium perfringens str. 13] gi|110798819|ref|YP_696441.1| GTP-binding protein EngA [Clostridium perfringens ATCC 13124] gi|110803315|ref|YP_699041.1| GTP-binding protein EngA [Clostridium perfringens SM101] gi|168207282|ref|ZP_02633287.1| putative GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|168210612|ref|ZP_02636237.1| putative GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|168214232|ref|ZP_02639857.1| putative GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|168217042|ref|ZP_02642667.1| putative GTP-binding protein Era [Clostridium perfringens NCTC 8239] gi|169342731|ref|ZP_02863772.1| putative GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|182625851|ref|ZP_02953617.1| putative GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|26006720|sp|Q8XJK1|DER_CLOPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123148666|sp|Q0TPJ9|DER_CLOP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123341699|sp|Q0SS66|DER_CLOPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|18145418|dbj|BAB81461.1| probable GTP binding protein [Clostridium perfringens str. 13] gi|110673466|gb|ABG82453.1| ribosome-associated GTPase EngA [Clostridium perfringens ATCC 13124] gi|110683816|gb|ABG87186.1| ribosome-associated GTPase EngA [Clostridium perfringens SM101] gi|169299237|gb|EDS81307.1| putative GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|170661368|gb|EDT14051.1| putative GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|170711316|gb|EDT23498.1| putative GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|170714259|gb|EDT26441.1| putative GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|177908885|gb|EDT71377.1| putative GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|182380862|gb|EDT78341.1| putative GTP-binding protein Era [Clostridium perfringens NCTC 8239] Length = 438 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N+ G ++SIV TR V + +DT GI Sbjct: 5 IVAMVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAESEWLNRKFTMIDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D K M R + I+ AD++ VVD L ++ + + K ++L++NKID Sbjct: 65 SSDIIVKQMRRQAQIAIEMADVIVFVVDGKEGLTAADQEVAQMLRKSKKPVVLVVNKIDR 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + LE+ + I +SA++G G D+L+ Sbjct: 125 LA----LEENSYEFYNLGIGDPITISASQGLGLGDMLD 158 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 86/164 (52%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKS+L+NR +G + IV++ TTR + + ++ + + +DT G+ Sbjct: 179 IAMIGKPNVGKSSLINRLLGEERVIVSNVPGTTRDSIDSYLETEDGKFILVDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + +++ I+ AD+ LV+D+ + + ++ + + +++++NK D Sbjct: 239 KVKEEIERYSVIRTYAAIEKADVAILVIDAEQGITEQDEKIIGYAHEMNKAIMVVVNKWD 298 Query: 142 CV-KPERLLE--QAEIANKLVFI--EKTFMVSATKGHGCDDVLN 180 + K ++ L Q ++ KL F+ K +SA G +L+ Sbjct: 299 LIEKDDKTLSNYQKDLQQKLKFMPYAKYLFISALTGQRVHKILS 342 >gi|220931954|ref|YP_002508862.1| small GTP-binding protein [Halothermothrix orenii H 168] gi|219993264|gb|ACL69867.1| small GTP-binding protein [Halothermothrix orenii H 168] Length = 395 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 15/178 (8%) Query: 16 VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 +Q SR VALVG TNAGKSTL+N A + T S +R + QI+ Sbjct: 169 IQRKSRKDPVVALVGYTNAGKSTLLNTLTNANTEVADKLFATLDSTLRRLTLPFGKQIII 228 Query: 75 LDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHR-ELKVNI---HDLLKEIAK 128 DT G K H+L+ + + IK ADI+ VVDS EL+ +I + +LKE+ Sbjct: 229 SDTVGFI--KKLPHQLVASFQATLEEIKEADILLHVVDSSEPELENHIKVVNAVLKELGV 286 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 I++LNKID LE+ ++ + + + VSA G D+++ +C + Sbjct: 287 FHKEKIMVLNKIDR------LEKGQLLDLGIKYPRAVPVSALSGKCIDNLMGKICEIM 338 >gi|319789803|ref|YP_004151436.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1] gi|317114305|gb|ADU96795.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1] Length = 469 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N + + +IVT TTR ++ V+ K + LDT GI + Sbjct: 230 VAIVGRPNVGKSSLLNAILQEERAIVTEIPGTTRDVIEETVTFKGLPVRLLDTAGIRESA 289 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKID 141 D ++ I S ++K AD+V V+D L + I LL R +I ++NK D Sbjct: 290 DVVERIGIEKSLKSLKEADVVLFVLDGSEGLTEEDLKIASLL----NRKDNVIAVINKAD 345 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L E + + + + ++SA +G G D++ + + Sbjct: 346 LA----LKLTCEQLKETLGVGRCVIISAKEGKGIDELASAM 382 >gi|297584434|ref|YP_003700214.1| ribosome-associated GTPase EngA [Bacillus selenitireducens MLS10] gi|297142891|gb|ADH99648.1| ribosome-associated GTPase EngA [Bacillus selenitireducens MLS10] Length = 446 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 10/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++SIV K TR + + +DT GI + Sbjct: 13 VLAIVGRPNVGKSTLFNRVVGERISIVEDKPGVTRDRIYSSAEWLTHEFFIIDTGGIEIS 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M + I AD++C VV+ + ++ + + + ++L +NKID Sbjct: 73 DEPLLEQMRYQAELAIDEADVICFVVNGRDGMTAADEEVAQILHRSKKPIVLAVNKID-- 130 Query: 144 KP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P ERL E + + VS T G G D+L+ ++ P Sbjct: 131 DPSMFERLYEFYSLG-----VGDPHPVSGTHGLGLGDLLDTAAASFP 172 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N+ D+ D R ++L+G N GKS++VN +G + IV+ TTR + ++ Sbjct: 174 NQGDDYHPDTVR---MSLIGRPNVGKSSMVNAILGEERVIVSDIAGTTRDAIDTSFTKDG 230 Query: 70 SQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 V +DT G+ Y K + + I+ +D+V +V+D + + Sbjct: 231 KDYVVIDTAGMRKRGKVYETTEKYSVLRALKAIERSDVVLVVLDGEEGIIEQDKKIAGYA 290 Query: 127 AKRSSRLILILNKIDCV-KPERLLEQAE--IANKLVFIE 162 + +++++NK D V K ++ +++ E I ++ VF++ Sbjct: 291 HEAGRAIVIVVNKWDAVEKDDKTMQKFEEKIRHEFVFLD 329 >gi|237743154|ref|ZP_04573635.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1] gi|229433450|gb|EEO43662.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1] Length = 455 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 15/158 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D+ R++ I+D++ + ++I ILNKID Sbjct: 283 IIENIGVEKSKELINSADLILYVIDTSRKIDEEDFRIYDII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K L +K IEK +SA G D++ N Sbjct: 338 KKDIDL-------SKFSKIEKWVEISALSKIGIDNLEN 368 >gi|91214599|ref|ZP_01251572.1| tRNA modification GTPase [Psychroflexus torquis ATCC 700755] gi|91187026|gb|EAS73396.1| tRNA modification GTPase [Psychroflexus torquis ATCC 700755] Length = 470 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 16/136 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + +S F+DT GI + Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSEIAGTTRDTIEDEISMGGIGFRFIDTAGIRETQ 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--------------RELKVNIHDLLKEIAKRS 130 D+ L I+ ++ IK + ++ ++DS + +K +IH L + +RS Sbjct: 284 DTIEGLGIQRTFEKIKQSQVIIKLIDSPKLFDDQQKLRTTEWKRIKADIHQLETDFPERS 343 Query: 131 SRLILILNKIDCVKPE 146 +L+ NK D + PE Sbjct: 344 --FLLLANKADLLSPE 357 >gi|290554|gb|AAA62057.1| 50 kD protein [Escherichia coli] Length = 454 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLRXXIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|325280073|ref|YP_004252615.1| GTP-binding protein engA [Odoribacter splanchnicus DSM 20712] gi|324311882|gb|ADY32435.1| GTP-binding protein engA [Odoribacter splanchnicus DSM 20712] Length = 435 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 10/167 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKSTL NR VG + +IV + TR G S +DT G + Sbjct: 2 SNIVAIVGRPNVGKSTLFNRLVGTRKAIVNEESGVTRDRNYGKSSWNGKDFSVIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILIL 137 N+ D + + + + + AD++ +VD+ +L N LL+ I K + L+ Sbjct: 62 SNSDDIFEEEINKQVILALDEADVILFMVDAEIGVTDLDQNFARLLRNIDK---PVYLVA 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 NK+D ERL E + +L F +S+ G G D+L+ + S Sbjct: 119 NKVD--NHERLYEAQDFY-RLGIKGDLFCISSVSGSGTGDLLDQVVS 162 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 73/146 (50%), Gaps = 9/146 (6%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 ++ F E+ ++D + +VG N GKS+ +N +G + +IVT TTR + Sbjct: 161 VSHFQENT--IEDTDHLPRITIVGRPNVGKSSTINALIGEERNIVTDIAGTTRDTLNTRY 218 Query: 66 SEKESQIVFLDTPGIF-NAKDS----YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + + +DT G+ AK S ++ +M S I+ +D+ L++D+ R ++ Sbjct: 219 NRFGYDFLLVDTAGLRKKAKVSEDVEFYSVM--RSIRAIEESDVCILLIDATRGMEAQDL 276 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE 146 ++ I + +++++NK D V+ + Sbjct: 277 NIFHLIERNRKGVVIVVNKWDLVEKD 302 >gi|227503688|ref|ZP_03933737.1| GTP-binding protein EngA [Corynebacterium accolens ATCC 49725] gi|227075724|gb|EEI13687.1| GTP-binding protein EngA [Corynebacterium accolens ATCC 49725] Length = 527 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 14/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR V + + + DT G Sbjct: 92 TVAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFIVQDTGGWDPN 151 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + + AD++ +VVD+ KV I + + +A+R + +I++ NK Sbjct: 152 VKGMHADIARQAELAMDTADVIVMVVDT----KVGITETDEVMARRLQKSPVPVIVVSNK 207 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D + A++A + + VSA G G DVL+ + + P P Sbjct: 208 FDSDN-----QYADMAQFYALGLGDPWPVSAQHGRGGADVLDEILRSFPEEP 254 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ + S+V + TT V +V E F+DT G + Sbjct: 266 VALVGRPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRKKV 325 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ +++D+ E+ +L + + L++ NK Sbjct: 326 KNAQGHEYYASLRTR-GVIDAAEVCIMLIDASEEISEQDQRVLNMVLESGKALVIAFNKW 384 Query: 141 DCVKPER 147 D + +R Sbjct: 385 DLMDEDR 391 >gi|163848650|ref|YP_001636694.1| GTP-binding protein EngA [Chloroflexus aurantiacus J-10-fl] gi|222526586|ref|YP_002571057.1| GTP-binding protein EngA [Chloroflexus sp. Y-400-fl] gi|189037140|sp|A9WHH9|DER_CHLAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783145|sp|B9LBT6|DER_CHLSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163669939|gb|ABY36305.1| small GTP-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222450465|gb|ACM54731.1| small GTP-binding protein [Chloroflexus sp. Y-400-fl] Length = 449 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 8/187 (4%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 + +T + K F Q+ R +A+VG N GKS+L+NR +G + S+V+ TTR + Sbjct: 163 LDRLTEYLPPKTFTQEEERHLRIAIVGRPNVGKSSLLNRLLGQERSVVSSIPGTTRDPID 222 Query: 63 GIVSEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ I +DT GI A + K + + I+ D+ L++D+ + Sbjct: 223 TTITYHGEPITLIDTAGIRRAGKIERGIEKYSVLRTLRAIERCDVALLLIDATEGVTAQD 282 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPER-----LLEQAEIANKLVFIEKTFMVSATKGHG 174 + + + LIL++NK D ++ + +Q A K V VSA G Sbjct: 283 THIAGMVVEAKKGLILVVNKWDAIEKDSHTYYAFQDQVREAFKFVDYAPIVFVSALTGQR 342 Query: 175 CDDVLNY 181 +L+Y Sbjct: 343 VSHLLDY 349 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 11/170 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKST NR +G + +IV TTR + G + +DT G+ F Sbjct: 6 VAIVGRPNVGKSTFFNRLIGERRAIVEDLPGTTRDRLYGDTFWNGREFTVVDTAGVLFGG 65 Query: 84 KDSY--HKLMIRLSWSTIKH----ADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 +D + R + + +H AD + +VD L D+ + S ++L + Sbjct: 66 EDPNLPEAEIARRTRAQAEHAIAEADAIIFIVDGRDGLTAADSDVADVLRTTSKPVVLAV 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK C ER+L+ E + + + +SA G G DVL+ L LP Sbjct: 126 NK--CDSQERMLDAVEF--YALNLGEPIPMSAFHGLGTGDVLDRLTEYLP 171 >gi|291531889|emb|CBK97474.1| tRNA modification GTPase TrmE [Eubacterium siraeum 70/3] Length = 457 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG NAGKSTL+NR G + SIVT TTR IV V + + D G Sbjct: 220 RNGIATAIVGKPNAGKSTLMNRLTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D+ + ++ I A ++ V D REL + L++ + ++ +I I+NK Sbjct: 280 IRETEDTVENIGVQRMIERIGTAQLILAVFDGSRELSDDDKRLIELLHGKT--VIPIINK 337 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D E + A I N+L K +SA G G D++ Sbjct: 338 SDL---EARADTAFIENEL---GKAVKISAKTGGGADEL 370 >gi|328704540|ref|XP_001946105.2| PREDICTED: GTPase Era, mitochondrial-like [Acyrthosiphon pisum] Length = 177 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 66/128 (51%) Query: 165 FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIP 224 FMVSA G D+ +YL +PW++ D ++D + L+ L E+P Sbjct: 36 FMVSAIHSLGSSDIEDYLLQKSKPSPWIFPKDVLTDKEDHKLVLHMIESTLYDFLPNEVP 95 Query: 225 YSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 Y+ V E +E ++G+I I +I+ P +K+++GK G I+ I++++++ + + Sbjct: 96 YNLKVEMEYYEVSREGNIHIVVLIHCNTPRIEKLVMGKRGSRIRNIAMKSEQHLRNLFLT 155 Query: 285 PVHLILFV 292 V L + V Sbjct: 156 DVFLKMVV 163 >gi|213155967|ref|YP_002318012.1| small GTP-binding protein [Acinetobacter baumannii AB0057] gi|301346486|ref|ZP_07227227.1| GTP-binding protein EngA [Acinetobacter baumannii AB056] gi|301594209|ref|ZP_07239217.1| GTP-binding protein EngA [Acinetobacter baumannii AB059] gi|254783128|sp|B7I5H1|DER_ACIB5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|213055127|gb|ACJ40029.1| small GTP-binding protein [Acinetobacter baumannii AB0057] Length = 469 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + + +DT GI + Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGES 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 ECGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPLQVAASHGRGVQQMLEDVLQDIP 163 Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +A++G N GKSTLVNR +G + + TTR + + + +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGV 234 >gi|312144164|ref|YP_003995610.1| GTP-binding proten HflX [Halanaerobium sp. 'sapolanicus'] gi|311904815|gb|ADQ15256.1| GTP-binding proten HflX [Halanaerobium sp. 'sapolanicus'] Length = 410 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 18/178 (10%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D + + ALVG TNAGKST++N GA + T S +R + I Sbjct: 179 RDVQRSQRKDPLAALVGYTNAGKSTIMNLLSGANSHVADQLFATLDSTMRQLELPVGRTI 238 Query: 73 VFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKE 125 + DT G + H+L R + I++ADI+ V+DS + +KV + + L+ Sbjct: 239 ILSDTVGFISKLP--HQLFASFRTTLEEIENADIILHVIDSSDPKMEKNIKV-VEEELEN 295 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYL 182 + S+ I I NKID LL+Q+EI + KL++ + F +SA KG G D +L L Sbjct: 296 LNSSKSKRIKIFNKID------LLKQSEINDLKLIYPDAIF-ISALKGIGKDKLLAKL 346 >gi|216263461|ref|ZP_03435456.1| ribosome-associated GTPase EngA [Borrelia afzelii ACA-1] gi|215980305|gb|EEC21126.1| ribosome-associated GTPase EngA [Borrelia afzelii ACA-1] Length = 433 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI + TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + + +++ + K S+++IL+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDVN-EILLEDYQIIERLRKYSNKVILVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KEFL---AHEFHNLGF-KRCFLVSAVHCRGIAKLRDFL 159 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G ++SIV+ K TTR ++ ++ +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEISIVSDKPGTTRDFIKTKLTRNGKVFEIIDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D EL + + K+ +I++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYVTKKGKGIIIVFSK 293 Query: 140 IDCVKPER 147 D VK + Sbjct: 294 WDLVKESK 301 >gi|225024775|ref|ZP_03713967.1| hypothetical protein EIKCOROL_01662 [Eikenella corrodens ATCC 23834] gi|224942482|gb|EEG23691.1| hypothetical protein EIKCOROL_01662 [Eikenella corrodens ATCC 23834] Length = 455 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 3/152 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G V+IVT TTR VR ++ + + +DT G+ + Sbjct: 221 VVLVGAPNVGKSSLLNALAGEDVAIVTDIAGTTRDTVREQITLEGIPVHIIDTAGLRDTT 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I S ++ AD+ +++D + L +L ++ R I I NKID Sbjct: 281 DPVEQIGIERSRQAVQQADVALILIDPNEGLNEATCKILAQLPPGLKR-IEIRNKIDLSG 339 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 E E + + + +SA G G D Sbjct: 340 --EAAESCEQSGQPSGADTLIKLSAKNGAGLD 369 >gi|325297682|ref|YP_004257599.1| tRNA modification GTPase mnmE [Bacteroides salanitronis DSM 18170] gi|324317235|gb|ADY35126.1| tRNA modification GTPase mnmE [Bacteroides salanitronis DSM 18170] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N V + +IV+ TTR I+ +S F+DT GI + Sbjct: 226 VAIIGETNAGKSTLLNALVKEERAIVSDIHGTTRDIIEDTISLNGITFRFIDTAGIRQTQ 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I S+ I A IV LV D + + +++A R ++I+ LNK D Sbjct: 286 DTIEALGIERSFQAIDRAQIVILVCDKSQG-ESAFQAFYRQVAGRLEGKQVIVALNKCDL 344 Query: 143 VKPERLL 149 L Sbjct: 345 ADTPTFL 351 >gi|152991112|ref|YP_001356834.1| GTP-binding protein EngA [Nitratiruptor sp. SB155-2] gi|166225831|sp|A6Q4R8|DER_NITSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151422973|dbj|BAF70477.1| GTP-binding protein, Era/ThdF family [Nitratiruptor sp. SB155-2] Length = 462 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 7/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR + + +IV+ TTR + R IV E + LDT GI + Sbjct: 4 IAIIGKPNVGKSSLFNRILKQRDAIVSETEGTTRDVKRRIVQIGEKEAEILDTGGIEDRN 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + K+ + S K ADI+ +VD + + + + K ++ L++NKID K Sbjct: 64 ELFEKVKQK-SLEAAKDADIILYMVDGKKLPDEEDKQIFRSLQKLGKKIALVINKIDNDK 122 Query: 145 PERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + N F + F +S + +L+++ LP Sbjct: 123 -----EEENVWNFYEFGTQDIFPISVSHNRKVKRLLDWVEKQLP 161 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 3/163 (1%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 ++ E+ NE + Q+ S VA++G N GKS+L+N + + SIV+ TT Sbjct: 174 LDFDELLAINEGEK-KQEESNEINVAILGRVNVGKSSLLNALLKEERSIVSDVAGTTIDT 232 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKD--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN 118 + + I F+DT GI K + + ++ AD+ LV+D+ + Sbjct: 233 IDESTIYNDKVITFIDTAGIRRRGKIVGIEKYALNRTQKMLERADVALLVLDASEGITEQ 292 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFI 161 + I K I++LNK D K E+ ++ F+ Sbjct: 293 DERIAGYIDKYKLACIIVLNKWDIAKKSYEEAVKEVRDRFKFL 335 >gi|319901508|ref|YP_004161236.1| tRNA modification GTPase trmE [Bacteroides helcogenes P 36-108] gi|319416539|gb|ADV43650.1| tRNA modification GTPase trmE [Bacteroides helcogenes P 36-108] Length = 461 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 8/176 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ V+ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNVLLNEEKAIVSDIHGTTRDVIEDTVNIDGITFRFIDTAGIRETN 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV ++D+ + I L ++I R +LIL+LNK D Sbjct: 284 DTIESLGIERTFQKLDQAEIVLWMIDA-TDASSQIVQLSEQILPRCEGKQLILVLNKADL 342 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 V+ + + + K+ +SA + D++ L + L P V D I Sbjct: 343 VQDTSSIATTDFPKNV----KSIFISAKRRTNIDELQQILIAAANL-PTVTQNDII 393 >gi|134297397|ref|YP_001121132.1| tRNA modification GTPase TrmE [Burkholderia vietnamiensis G4] gi|205829126|sp|A4JJ44|MNME_BURVG RecName: Full=tRNA modification GTPase mnmE gi|134140554|gb|ABO56297.1| tRNA modification GTPase trmE [Burkholderia vietnamiensis G4] Length = 464 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 21/205 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D ++ I +WS I+ AD+V ++DS + Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSEIERADVVLHLLDS----R 316 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 + + IA R ++ +LNK D +E A L + +SA +G Sbjct: 317 TGMTPEDETIAARFPDGVPVVRVLNKTDLTGVPACVEHPAAAGDLTEVH----LSAKRGD 372 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 373 GIDMLRAEL---LRIAGWQAGAEGV 394 >gi|54307962|ref|YP_128982.1| GTP-binding protein EngA [Photobacterium profundum SS9] gi|81828838|sp|Q6LU45|DER_PHOPR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|46912388|emb|CAG19180.1| putative GTP-binding protein [Photobacterium profundum SS9] Length = 493 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 59/123 (47%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L V+ + K + R L++NKID + Sbjct: 64 EEGVETKMAEQSLAAIEEADVVLFLVDGRAGLTVSDEAIAKHLRSRDKPTFLVVNKIDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ K Sbjct: 207 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGVRRRK 266 Query: 85 DSYH---KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + ++ A++V L++D+ + LL + L+L +NK D Sbjct: 267 NMNQVVEKFSVIQTLKAVEDANVVLLIIDARENISDQDLSLLGFVLNSGRSLVLAVNKWD 326 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + ++E+ +L FI+ + +SA G G Sbjct: 327 GLDNEVKERVKSELDRRLGFIDFARIHFISALHGTGV 363 >gi|238027077|ref|YP_002911308.1| Small GTP-binding protein [Burkholderia glumae BGR1] gi|237876271|gb|ACR28604.1| Small GTP-binding protein [Burkholderia glumae BGR1] Length = 398 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 20/172 (11%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFL 75 ++ +R+ V+LVG TNAGKSTL N A+ T + R + + ++ QIV Sbjct: 190 RERNRTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGDEVGQIVVS 249 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKR 129 DT G ++ H+L+ R + HAD++ VVD+ +++ ++D+L EI Sbjct: 250 DTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNDVLHEIGAD 307 Query: 130 SSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 308 AIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARSGQGLD 353 >gi|209885224|ref|YP_002289081.1| GTP-binding proten HflX [Oligotropha carboxidovorans OM5] gi|209873420|gb|ACI93216.1| GTP-binding proten HflX [Oligotropha carboxidovorans OM5] Length = 437 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 7/163 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R + + + DT G + Sbjct: 205 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRALRLPHGGKAMISDTVGFISD 264 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA---KRSSRLILI 136 + R + + AD++ V D SH + + D +L+++ + R+I + Sbjct: 265 LPTMLVAAFRATLEEVIEADVILHVRDISHEDAEAQERDVDHVLRQLGIGTESGHRIIEV 324 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NKIDC PE A IA + F+VSA G G D +L Sbjct: 325 WNKIDCFSPEERENLARIAARRPADHPCFLVSAETGEGIDALL 367 >gi|313900904|ref|ZP_07834394.1| tRNA modification GTPase TrmE [Clostridium sp. HGF2] gi|312954324|gb|EFR36002.1| tRNA modification GTPase TrmE [Clostridium sp. HGF2] Length = 443 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+L+N + + +IVT TTR IV G + + + +DT GI + +D Sbjct: 223 AIVGKPNVGKSSLLNALLEEEKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRDTED 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ IR S I A +V +V+DS L +LL E+ K +R I++ NK D Sbjct: 283 VVEQIGIRRSLQAISEAQLVIVVLDSSHALDAQDEELL-ELTKDKTR-IIVYNKTD 336 >gi|294789735|ref|ZP_06754966.1| tRNA modification GTPase TrmE [Simonsiella muelleri ATCC 29453] gi|294482301|gb|EFG29997.1| tRNA modification GTPase TrmE [Simonsiella muelleri ATCC 29453] Length = 457 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 7/156 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V LVGA N GKS+L+N G V+IVT TTR VR ++ I +DT G+ Sbjct: 220 TVVLVGAPNVGKSSLLNALAGDDVAIVTDIAGTTRDTVREQITLDGIPIHMIDTAGLRQT 279 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K+ I S +++ADI +++D + ++L + + R I I NKID Sbjct: 280 NDIVEKIGIERSEKAVQNADIALILIDPDNGVNETTREILFRLPENLKR-IEIQNKIDLR 338 Query: 144 --KPERLLEQAEIANKLVFIEKTFM-VSATKGHGCD 176 +PER+ ++ L T + +SA G G D Sbjct: 339 NEQPERV---DNLSGSLKSGADTLIKLSAKTGAGLD 371 >gi|260101882|ref|ZP_05752119.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075] gi|260084310|gb|EEW68430.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075] gi|328463992|gb|EGF35490.1| tRNA modification GTPase TrmE [Lactobacillus helveticus MTCC 5463] Length = 461 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD+V L++D+ +EL L++E + + I++LNK Sbjct: 282 IHHTDDKVEKIGVERSKKALDRADLVLLLIDASQELTAEDKALIEET--KDKKRIIVLNK 339 Query: 140 ID 141 D Sbjct: 340 SD 341 >gi|189500937|ref|YP_001960407.1| GTP-binding protein EngA [Chlorobium phaeobacteroides BS1] gi|238692267|sp|B3EMI7|DER_CHLPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189496378|gb|ACE04926.1| small GTP-binding protein [Chlorobium phaeobacteroides BS1] Length = 435 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 10/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE--KESQIVFLDTPGIFN 82 VALVG N GKSTL NR +K +I TR R I S + + + +DT G + Sbjct: 5 VALVGRPNVGKSTLFNRLSRSKSAITDSTPGVTRD--RHIASAEWQGRKFMVMDTGGYCH 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKI 140 KDS ++ M+ + + I AD++ +VD L D+ + + K R + L++NK+ Sbjct: 63 DKDSLNRAMMEQTLAAIAEADVILFMVDVRSGLAYLDLDMSRMLKKNFRDKPVYLVVNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +L + E + E F +SA +G+G D+L+ + ++ P Sbjct: 123 ET---RQLAFEGEEFRRTGLTEPWF-ISAREGNGVADLLDEVVASFP 165 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+ VN +G IV+ TTR + + +++ +DT G+ Sbjct: 178 LAIIGRPNVGKSSFVNALLGTNRHIVSDIPGTTRDAIDSRLKRNGKEVLLIDTAGLRKRT 237 Query: 85 DSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S T I+ D+ L++D+ + L+ +++ A++ +++++NK D Sbjct: 238 KIDRGIEFYSSVRTDKSIERCDVALLLIDAEQGLEKQDIKIIQMAAEKRKGIVILVNKWD 297 Query: 142 CVKPE 146 ++ E Sbjct: 298 LIEKE 302 >gi|216264686|ref|ZP_03436678.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 156a] gi|215981159|gb|EEC21966.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 156a] Length = 433 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + + +++ + K SS+++L+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KECL---AHEFHNLGF-KRYFLVSAAHCRGITKLRDFL 159 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 12/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G +++IV+ + TTR ++ + +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D +L + + K+ ++++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYVTKKGKGIVIVFSK 293 Query: 140 IDCV-KPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVL 179 D V +P+ E + K F F +S K G D + Sbjct: 294 WDLVDEPKGYFEALKSRVKFFFPILNFAPIFRISVHKKIGLDSLF 338 >gi|161508218|ref|YP_001578189.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DPC 4571] gi|205415770|sp|A8YTQ7|MNME_LACH4 RecName: Full=tRNA modification GTPase mnmE gi|160349207|gb|ABX27881.1| Thiophene and furan oxidation protein [Lactobacillus helveticus DPC 4571] Length = 461 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD+V L++D+ +EL L++E + + I++LNK Sbjct: 282 IHHTDDKVEKIGVERSKKALDRADLVLLLIDASQELTAEDKALIEET--KDKKRIIVLNK 339 Query: 140 ID 141 D Sbjct: 340 SD 341 >gi|323467508|gb|ADX71195.1| tRNA modification GTPase mnmE [Lactobacillus helveticus H10] Length = 467 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 228 RNGLATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAG 287 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD+V L++D+ +EL L++E + + I++LNK Sbjct: 288 IHHTDDKVEKIGVERSKKALDRADLVLLLIDASQELTAEDKALIEET--KDKKRIIVLNK 345 Query: 140 ID 141 D Sbjct: 346 SD 347 >gi|225849583|ref|YP_002729817.1| GTP-binding protein EngA [Persephonella marina EX-H1] gi|254783162|sp|C0QT02|DER_PERMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|225645742|gb|ACO03928.1| ribosome-associated GTPase EngA [Persephonella marina EX-H1] Length = 447 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 8/137 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG NAGKS+L+N +G + ++V+ TTR +V + K+ + +FLDT G+ + Sbjct: 185 VAIVGKPNAGKSSLLNAILGEERAVVSEIPGTTRDVVDTLFEWKDQKFLFLDTAGLRKKS 244 Query: 84 KDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K Y I + IK AD++ V+D+ + + I K + ++++NKID Sbjct: 245 KVDYGIEFFSIGRTLDAIKKADVIVHVIDAQQGATEQDTKIAHLIQKYTKPAVIVINKID 304 Query: 142 CVKPERLLEQAEIANKL 158 V P ++E+ N++ Sbjct: 305 TVPP-----KSEVLNRI 316 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKS+L NR +G + +IV TR + + +DT G I + Sbjct: 4 VAIVGRPNVGKSSLFNRIIGKRKAIVEDIPGVTRDRIVSTAEWRGVTFEVVDTGGYIESD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 KD++ + + ++ +D LVVD L ++ + + + + + +NKID Sbjct: 64 KDTFAPYIRKQIEKELELSDAFILVVDGKEGLTPADKEIARILHRTDKPVYVAVNKID-- 121 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +E+A + EK F VS+ + +G D+L+ + +P Sbjct: 122 NPE--MEKAIYEFYELGFEKVFPVSSIQKYGVADLLDAVVQDIP 163 >gi|291085040|ref|ZP_06570912.1| ribosome-associated GTPase EngA [Citrobacter youngae ATCC 29220] gi|291071734|gb|EFE09843.1| ribosome-associated GTPase EngA [Citrobacter youngae ATCC 29220] Length = 504 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 15/185 (8%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F NE + V VALVG N GKSTL NR + ++V TR G Sbjct: 8 FLNEALNMVP------VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEI 61 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + + + +DT GI +D M S I+ AD+V +VD+ L + K + Sbjct: 62 EGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLR 121 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R L+ NK D + P +QA I + + + ++A+ G G +L ++ Sbjct: 122 ARQKPTFLVANKTDGLDP----DQAVIDFYSLGLGEIHPIAASHGRGVLSLLEHV----- 172 Query: 188 LAPWV 192 L PW+ Sbjct: 173 LLPWM 177 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + V +DT G+ Sbjct: 219 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 278 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 279 KITEAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 338 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 339 GLTQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 379 >gi|262066862|ref|ZP_06026474.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC 33693] gi|291379413|gb|EFE86931.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC 33693] Length = 455 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D+ RE+ I+D++ + ++I ILNKID Sbjct: 283 IVENIGVEKSKELINSADLILYVIDTSREIDEEDFRIYDII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 K L +K I+K +SA G D++ Sbjct: 338 KKEIDL-------SKFPKIDKWIEISALSKIGIDNL 366 >gi|154149467|ref|YP_001405674.1| GTP-binding protein EngA [Campylobacter hominis ATCC BAA-381] gi|166224322|sp|A7HZI3|DER_CAMHC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|153805476|gb|ABS52483.1| GTP-binding protein EngA [Campylobacter hominis ATCC BAA-381] Length = 460 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 7/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G N GKS+L NRFVG +++I + TTR + ++ + + + +D+ G+ ++ Sbjct: 4 VILIGRPNVGKSSLFNRFVGKRIAITSDISGTTRDTNKTVIEIFDKKCILIDSGGLDDSS 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + K+ + + +++ DI+ +VD + L + + L L++NKID K Sbjct: 64 EMFAKVQAK-TLKEVRNCDIILFIVDGKFMPSDDEKKLFHSFSGLNKPLALVINKIDSKK 122 Query: 145 P-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ER E E K F +S + G D+V +++ L Sbjct: 123 DEERSFEFIEFGAK-----DKFNISVSHNDGIDEVKSWIYKLL 160 Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 11/178 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E GEI E KD ++ V ++G N GKS+L+N V ++V+ TT V Sbjct: 181 ENGEIL---EEKDESFYENKPIKVGIIGRVNVGKSSLLNALVKENRAVVSEVAGTTIDPV 237 Query: 62 RGIVSEKESQIVFLDTPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELK 116 + + I F+DT GI + K + + ++ DI +V+D+ EL Sbjct: 238 NENYTFNDKVIEFVDTAGIRKRGKIEGIEKFALNRTEKILEQCDIALMVLDASEPFSELD 297 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 I L AK +I++LNK D + + Q +I +K F+ ++S + G Sbjct: 298 ERIAGLA---AKFELGVIIVLNKWDKSEEDFDKVQKKIKDKFRFLSYAPIISVSALGG 352 >gi|317133704|ref|YP_004093018.1| tRNA modification GTPase TrmE [Ethanoligenens harbinense YUAN-3] gi|315471683|gb|ADU28287.1| tRNA modification GTPase TrmE [Ethanoligenens harbinense YUAN-3] Length = 455 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 8/152 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+NR +G + SIVT TTR +V + DT G+ Sbjct: 223 VAIVGKPNVGKSTLMNRLLGEERSIVTEIAGTTRDVVEESAQFAGMTLHLFDTAGLRETD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ + + S I+ A +V ++ D R L + + + R+I ILNK D Sbjct: 283 DPVERIGVARAKSKIEQAMLVFVLFDGSRPLDGEDESIFSML--QGKRVIAILNKADL-- 338 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 P+R ++A +SA + HG D Sbjct: 339 PQR----CDMARIRSVFPDMVSISAAEAHGMD 366 >gi|313837716|gb|EFS75430.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA2] gi|314927402|gb|EFS91233.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL044PA1] gi|314972655|gb|EFT16752.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA3] gi|328907486|gb|EGG27252.1| GTP-binding protein EngA [Propionibacterium sp. P08] Length = 456 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 4/180 (2%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F + D +++ VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 7 FLHGPSDGIEEALLKPVVAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEW 66 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 Q V +DT G + ++ + I AD V VVD++ +++ + Sbjct: 67 SGRQFVLVDTGGWASDASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLR 126 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +++ NK+D + E LE A + N + + + VSA G G D+L+ L + LP Sbjct: 127 QSHKPIVVAANKVDDARGE--LEAATMWN--LGLGEPHPVSAIHGRGSGDLLDALIAVLP 182 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA+VG N GKS+L+NR +V+ TT V +V+ + F+DT G+ Sbjct: 197 VAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKRV 256 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L + + I+ A++ +VVD+ + +L + +++ NK D Sbjct: 257 KEASGHEYYASLRTQAAIERAEVCVVVVDASESISDQDLRILTMVENAGRAMVIAYNKWD 316 >gi|225848361|ref|YP_002728524.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense Az-Fu1] gi|225644654|gb|ACN99704.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense Az-Fu1] Length = 447 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 3/130 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L N VG + SIV+ TTR + + K+ I+ LDT GI Sbjct: 218 LAIVGRPNVGKSSLFNAMVGYERSIVSSYQGTTRDFIEETLKIKDIPIILLDTAGIRETA 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV- 143 + KL I S I+ ADI+ V+D + + EI + I+++NK D + Sbjct: 278 EYVEKLGIERSKQKIEEADIILFVIDGSQGFTDEDKKIYDEIKNKIH--IIVINKADLIT 335 Query: 144 KPERLLEQAE 153 KP + E+++ Sbjct: 336 KPLDIFEKSD 345 >gi|163749553|ref|ZP_02156800.1| GTP-binding protein EngA [Shewanella benthica KT99] gi|161330663|gb|EDQ01600.1| GTP-binding protein EngA [Shewanella benthica KT99] Length = 492 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G S + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRASLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I+ AD+V + D+ L H + + + +R ++ NKID + Sbjct: 64 EEGIEVHMAQQSLAAIEEADVVLFLTDARAGLTAADHAIAEHLRRRDKTTFVVANKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + AE + + + + ++A++G G +++ Y LAP+ Sbjct: 124 DADSAC--AEFW--ALGLGEVYQMAASQGRGVTNMIEY-----ALAPYA 163 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL+NR +G + +V TTR + + + + V +DT G+ Sbjct: 202 LAIIGKPNVGKSTLINRILGEERVVVYDSPGTTRDSIYIPMVREGREYVLIDTAGVRRRS 261 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ ++V L++D+ + LL L++ +NK D Sbjct: 262 KVNETVEKFSVIKTLKAVEDCNVVLLIIDAREGITEQDLGLLGFALNAGRALVIAVNKWD 321 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + ++E+ +L FI+ + +SA G G Sbjct: 322 GIDQEIKDRVKSELDRRLGFIDFARIHFISALHGTGV 358 >gi|223937602|ref|ZP_03629505.1| tRNA modification GTPase TrmE [bacterium Ellin514] gi|223893765|gb|EEF60223.1| tRNA modification GTPase TrmE [bacterium Ellin514] Length = 457 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 A++G NAGKS+L+N+ +G +IV+H TTR + + + IVF+DT G+ A Sbjct: 226 AAIIGRPNAGKSSLLNQLLGRDRAIVSHIPGTTRDTIEETANVRGLPIVFVDTAGLREAG 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D IR S T+ A+ + V+D+ L + + L E + + + IL+ NK+D Sbjct: 286 DEIEVEGIRRSRETLSKAEFILHVLDASEPLTMADENYLAEFSDK--KRILVRNKMD 340 >gi|110596891|ref|ZP_01385181.1| Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] gi|110341578|gb|EAT60038.1| Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] Length = 437 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 10/168 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +ALVG N GKSTL NR + + +IV T V R I G K Q + +DT G Sbjct: 4 LIALVGRPNVGKSTLFNRILRQRSAIVDSTPGVTRDRHIADGEWQGK--QFLLMDTGGYN 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNK 139 D K M+ + I+ ADI+ V D+ L +L K + + ++ +L +NK Sbjct: 62 AESDLISKAMLEQTLMAIRDADIIVFVTDARAGLSYEDLELGKLLKRNFQNKQLFFAVNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++ P+ ++E + K + +SA G G D+L+ + T P Sbjct: 122 VES--PQLIIEAESFIS--TGFTKPYFISAKDGSGVADMLDDILETFP 165 Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 37/72 (51%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F E +D + + +A+VG N GKS+ VN + + IV+ TTR + + K Sbjct: 164 FPELEDVPDEEDSAISLAIVGRPNVGKSSFVNALLNSNRHIVSSIAGTTRDAIDSRFTRK 223 Query: 69 ESQIVFLDTPGI 80 + + V +DT G+ Sbjct: 224 KQEFVLIDTAGL 235 >gi|223888990|ref|ZP_03623581.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 64b] gi|223885806|gb|EEF56905.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 64b] Length = 433 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESAYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + + +++ + K SS+++L+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KECL---AHEFHNLGF-KRYFLVSAAHCRGITKLRDFL 159 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 7/124 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G +++IV+ + TTR ++ + +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D +L + + K+ ++++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYVTKKGKGIVIVFSK 293 Query: 140 IDCV 143 D V Sbjct: 294 WDLV 297 >gi|15594853|ref|NP_212642.1| GTP-binding protein EngA [Borrelia burgdorferi B31] gi|218249913|ref|YP_002375018.1| ribosome-associated GTPase EngA [Borrelia burgdorferi ZS7] gi|221218131|ref|ZP_03589597.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 72a] gi|224532891|ref|ZP_03673503.1| ribosome-associated GTPase EngA [Borrelia burgdorferi WI91-23] gi|225548736|ref|ZP_03769783.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 94a] gi|225549607|ref|ZP_03770573.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 118a] gi|226321818|ref|ZP_03797344.1| ribosome-associated GTPase EngA [Borrelia burgdorferi Bol26] gi|8134424|sp|O51461|DER_BORBU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2688422|gb|AAC66872.1| GTP-binding protein [Borrelia burgdorferi B31] gi|218165101|gb|ACK75162.1| ribosome-associated GTPase EngA [Borrelia burgdorferi ZS7] gi|221192079|gb|EEE18300.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 72a] gi|224512167|gb|EEF82556.1| ribosome-associated GTPase EngA [Borrelia burgdorferi WI91-23] gi|225369884|gb|EEG99331.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 118a] gi|225370766|gb|EEH00202.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 94a] gi|226233007|gb|EEH31760.1| ribosome-associated GTPase EngA [Borrelia burgdorferi Bol26] Length = 433 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + + +++ + K SS+++L+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KECL---AHEFHNLGF-KRYFLVSAAHCRGITKLRDFL 159 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 7/124 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G +++IV+ + TTR ++ + +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D +L + + K+ ++++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYVTKKGKGIVIVFSK 293 Query: 140 IDCV 143 D V Sbjct: 294 WDLV 297 >gi|1524359|emb|CAA66716.1| GTPase [Synechocystis sp. PCC 6803] Length = 456 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + +IVT TTR +V + + I LDT G Sbjct: 219 RTGLKVAIVGQPNVGKSSLLNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + AD+V L VD+H+ + +++ R LIL++NK Sbjct: 279 IRETADQVEQIGVERSRKAAQQADLVLLTVDAHQGWTEADQLIYEQVKDRP--LILVINK 336 Query: 140 IDCVKPERLLEQAEIANKLV 159 ID + + + EI N ++ Sbjct: 337 IDLGRADLVSYPPEITNTVL 356 >gi|308069529|ref|YP_003871134.1| GTP-binding protein engA [Paenibacillus polymyxa E681] gi|305858808|gb|ADM70596.1| GTP-binding protein engA [Paenibacillus polymyxa E681] Length = 440 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKST+ NR +G ++SIV K TR + GI +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIIGDRLSIVEDKPGITRDRIYGISEWNGKSFSIIDTGGIEID 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D K + + I+ AD++ + D+ + + ++ + + + +I+ +NK+D Sbjct: 65 GEDVILKSIRMQAELAIEEADVIVFMSDAKAGITQSDEEVAQMLYRSGKPIIVAVNKVDN 124 Query: 143 VKPERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLNYLCSTLP 187 + L+ + F F VS + G G D+L+ + S LP Sbjct: 125 LSRADLIYE--------FYSYGFGDPIAVSGSHGTGIGDLLDAITSNLP 165 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 10/148 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL+G N GKS+LVN +G + IV+ TTR + + + V +DT G+ Sbjct: 179 VALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDTPFEKDGQKYVLIDTAGMRKRG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I+ AD+V +V++ E +I E K S + ++N Sbjct: 239 KVYETTEKYSVMRAMRAIERADVVLVVINGEEGIIEQDKHIAGYAYEAGKAS---LFVVN 295 Query: 139 KIDCV-KPERLLEQAEIANKLVFIEKTF 165 K D V K ++ + Q E + F+ T+ Sbjct: 296 KWDVVDKDDKTMHQFETKIRDHFLFMTY 323 >gi|296122241|ref|YP_003630019.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] gi|296014581|gb|ADG67820.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] Length = 411 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V++VG NAGKS+L+NR +G + SIV + TTR IVR + + DT G+ ++ Sbjct: 213 VSIVGLPNAGKSSLINRLLGYERSIVIDQPGTTRDIVRASTAIGGWLVHLADTAGVRESE 272 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D I+ + +T AD+V VVD+ + L+ D+ +++++ ++++LNK D Sbjct: 273 DPLEAEGIQKTMATAGQADLVMYVVDASQSLQAA--DV--QLSRQFRDVVVLLNKCDLPM 328 Query: 145 PERLLEQ 151 +L+Q Sbjct: 329 DRDVLQQ 335 >gi|258619961|ref|ZP_05715001.1| GTP-binding protein [Vibrio mimicus VM573] gi|258627193|ref|ZP_05721981.1| GTP-binding protein [Vibrio mimicus VM603] gi|262165075|ref|ZP_06032812.1| GTP-binding protein EngA [Vibrio mimicus VM223] gi|262172166|ref|ZP_06039844.1| GTP-binding protein EngA [Vibrio mimicus MB-451] gi|258580495|gb|EEW05456.1| GTP-binding protein [Vibrio mimicus VM603] gi|258587694|gb|EEW12403.1| GTP-binding protein [Vibrio mimicus VM573] gi|261893242|gb|EEY39228.1| GTP-binding protein EngA [Vibrio mimicus MB-451] gi|262024791|gb|EEY43459.1| GTP-binding protein EngA [Vibrio mimicus VM223] Length = 494 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 7/179 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L V + + + + IL++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QISDL 201 + AE + +E+ + ++A G G +++ + P A + S Q+ DL Sbjct: 124 DAD--AASAEFWQ--LGMEQMYQIAAAHGRGVGALIDRALN--PFAEQMESEQAQLEDL 176 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ K Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRK 267 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLNTDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|226320990|ref|ZP_03796535.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 29805] gi|226233591|gb|EEH32327.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 29805] Length = 433 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + + +++ + K SS+++L+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KECL---AHEFHNLGF-KRYFLVSAAHCRGITKLRDFL 159 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 7/124 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G +++IV+ + TTR ++ + +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D +L + + K+ ++++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYVTKKGKGIVIVFSK 293 Query: 140 IDCV 143 D V Sbjct: 294 WDLV 297 >gi|74318842|ref|YP_316582.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC 25259] gi|123611091|sp|Q3SF39|MNME_THIDA RecName: Full=tRNA modification GTPase mnmE gi|74058337|gb|AAZ98777.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC 25259] Length = 446 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 16 VQDNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 V+ +R G V LVG N GKS+L+NR G +IVT TTR VR + + Sbjct: 207 VRSQARQGVLLREGLTVVLVGQPNVGKSSLLNRLAGFDAAIVTEIAGTTRDTVREAIQIE 266 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 I +DT G+ D +L I SW ++ AD+ L+VD+ Sbjct: 267 GVPIHVIDTAGLRETSDPIEQLGIARSWEAVEKADVALLLVDA 309 >gi|190171218|gb|ACE63679.1| ThdF [Enterobacter hormaechei ATCC 49162] Length = 439 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D E I++ V +SA G G +D+ N+L Sbjct: 313 IARLPAKLPITVVRNKADVTG-----ETLGISD--VNGHSLIRLSARTGEGVEDLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|311739376|ref|ZP_07713211.1| ribosome-associated GTPase EngA [Corynebacterium pseudogenitalium ATCC 33035] gi|311305192|gb|EFQ81260.1| ribosome-associated GTPase EngA [Corynebacterium pseudogenitalium ATCC 33035] Length = 526 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 14/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR + + + + DT G Sbjct: 92 TVAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYVADWNGQRFLVQDTGGWDPN 151 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + ++ AD++ +VVD+ KV I + + +A+R + +IL+ NK Sbjct: 152 VKGIHAAIARQAEVAMETADVIVMVVDT----KVGITETDEVMARRLQKSPVPVILVSNK 207 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D + A++A + + VSA G G DVL+ + P P Sbjct: 208 FDSDN-----QYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRVFPEEP 254 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ + S+V + TT V +V + F+DT G + Sbjct: 266 VALVGKPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDDQLWKFIDTAGLRKKV 325 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ +++D+ E+ +L + + L++ NK Sbjct: 326 KNAQGHEYYASLRTR-GVIDAAEVCIMLIDASEEISEQDQRVLNMVLEAGKALVIAFNKW 384 Query: 141 DCVKPER 147 D + +R Sbjct: 385 DLMDEDR 391 >gi|94312541|ref|YP_585751.1| tRNA modification GTPase TrmE [Cupriavidus metallidurans CH34] gi|205415800|sp|Q1LH94|MNME_RALME RecName: Full=tRNA modification GTPase mnmE gi|93356393|gb|ABF10482.1| GTPase [Cupriavidus metallidurans CH34] Length = 475 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 15/153 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++T E V +R G V L G N GKS+L+N G+ ++IVT T Sbjct: 195 GQLTRIREDLAGVLKQARQGSLLREGLSVVLAGQPNVGKSSLLNALAGSDLAIVTPIAGT 254 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSH--- 112 TR VR + + +DT G+ +A D ++ I +W I+HADIV ++D+ Sbjct: 255 TRDRVRETIQIDGIPLHIIDTAGLRDDAADEVERIGIERTWEAIRHADIVLHLIDAADYI 314 Query: 113 ----RELKVNIHDLLKEIAKRSSRLILILNKID 141 E +I D L S ++ ++NKID Sbjct: 315 EHGISETDDHIDDRLSGQLPPGSPIVRVINKID 347 >gi|16330488|ref|NP_441216.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803] gi|2495120|sp|P73839|MNME_SYNY3 RecName: Full=tRNA modification GTPase mnmE gi|1652979|dbj|BAA17896.1| thiophen and furan oxidation protein [Synechocystis sp. PCC 6803] Length = 456 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + +IVT TTR +V + + I LDT G Sbjct: 219 RTGLKVAIVGQPNVGKSSLLNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + AD+V L VD+H+ + +++ R LIL++NK Sbjct: 279 IRETADQVEQIGVERSRKAAQQADLVLLTVDAHQGWTEADQLIYEQVKDRP--LILVINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 ID + + + EI N T + +A G + + N + Sbjct: 337 IDLGRADLVSYPPEITN-------TVLTAAAANLGIEALENAI 372 >gi|325283649|ref|YP_004256190.1| GTP-binding protein engA [Deinococcus proteolyticus MRP] gi|324315458|gb|ADY26573.1| GTP-binding protein engA [Deinococcus proteolyticus MRP] Length = 441 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L NR +G + ++V TR I+ +I +DT G+++ Sbjct: 4 VAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEEIMLYHNHRITLVDTGGLWSGD 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + W+ ++ AD V V+D L +++ + + ++++ NKID K Sbjct: 64 EWEAVIREKAEWA-LEGADAVIFVLDPRDGLSAADYEVADWLRRLGRPVVVVANKIDSPK 122 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L AE+ L F E +SA G DD+++ + LP Sbjct: 123 HEPYL--AELW-ALGFGEPV-AISAEHARGLDDLMDRIMEHLP 161 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++L+G N GKS+L+N + +IV TTR + + V +DT GI Sbjct: 175 ISLIGRPNVGKSSLLNAITQSDRAIVADVPGTTRDSLDVEWDYGGQRFVLVDTAGIRKKP 234 Query: 85 DSY-HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNKID 141 D+ I+ S + I+ +D++ LV+++ + H+L L +A S + +I+++NK D Sbjct: 235 DTAIEDYAIQRSQAAIERSDLIWLVLNAD---DLGDHELKLANLAYDSGKPVIVVVNKWD 291 Query: 142 CVKPERLLEQA--EIANKLVFIEKTFMV--SATKGHGCDDVL 179 V P+ L++A E+ KL I V SA +G D+L Sbjct: 292 LV-PDEDLKRAEKELDQKLFHIAYAPRVYTSAINDYGIHDML 332 >gi|163733995|ref|ZP_02141436.1| GTP-binding protein EngA [Roseobacter litoralis Och 149] gi|161392531|gb|EDQ16859.1| GTP-binding protein EngA [Roseobacter litoralis Och 149] Length = 492 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 13/187 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ + Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLEDV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE--IAKRSSRLILILNKI 140 DS M RL+ + ADI +VD+ + + DL+ + KR+ +IL NK Sbjct: 64 TDDSLQGRMRRLTERAVDMADICLFMVDAR--VGITPTDLVFADILRKRAGHVILAANKS 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + I + + + +SA G G +D+ +L +PLA Y+ D Sbjct: 122 EGAA----ADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTHL---MPLAD-AYAERAAED 173 Query: 201 LPMFHFT 207 P T Sbjct: 174 APEIDVT 180 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 31/174 (17%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV--RGIVSEKESQIV---FLDTPG 79 VA+VG N+GKSTLVN+ +G + + TR + R E ++ DT G Sbjct: 203 VAVVGRPNSGKSTLVNQILGEDRLLTGPEAGITRDAISLRMDWVGPEGDVIPMRIFDTAG 262 Query: 80 I---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLIL 135 + ++ KL + +K A++V +++D+ + DL + ++A+R R ++ Sbjct: 263 MRKKAKVQEKLEKLSVGDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVV 320 Query: 136 I-LNKIDCVKP------------ERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +NK D + ERLL Q A VSA G G D Sbjct: 321 VAVNKWDIEENKQAKLKDLRESFERLLPQLRGA-------PLVTVSARTGRGLD 367 >gi|305666624|ref|YP_003862911.1| tRNA modification GTPase [Maribacter sp. HTCC2170] gi|88708895|gb|EAR01130.1| tRNA modification GTPase [Maribacter sp. HTCC2170] Length = 470 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 12/169 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + ++ F+DT GI + K Sbjct: 224 VAIVGEPNVGKSTLLNALLNEEKAIVSDIAGTTRDAIEDEIAIGGIGFRFIDTAGIRDTK 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLV--VDSHRELKVNIHDLLKEIAKRSSR-----LILIL 137 D + I+ ++ I+ + +V + + + ++++ L E+ K S++ L++I+ Sbjct: 284 DIVENIGIKKTFEKIEQSQVVLFLHSAEEFQNAEISLTSLQNEVGKISTKHPNKPLVIIV 343 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTF--MVSATKGHGCDDVLNYLCS 184 NKID + + E+ ++ L IE T ++SA G +DV N L + Sbjct: 344 NKIDILNNK---ERQQLETLLSNIEGTTYKLISAKTGESVEDVKNMLLN 389 >gi|161986480|ref|YP_311456.2| GTP-binding protein EngA [Shigella sonnei Ss046] gi|323169045|gb|EFZ54722.1| small GTP-binding domain protein [Shigella sonnei 53G] Length = 490 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L + L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLERV-----LLPWM 163 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ ++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDTNVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|315039281|ref|YP_004032849.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112] gi|325957755|ref|YP_004293167.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC] gi|312277414|gb|ADQ60054.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112] gi|325334320|gb|ADZ08228.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC] gi|327184388|gb|AEA32835.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1118] Length = 461 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGQPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V L++D+ +EL L+ E + + I+ILNK Sbjct: 282 IHHTDDKVEKIGVERSKKALERADLVLLLIDASQELTDEDKALIDET--KDKKRIIILNK 339 Query: 140 ID 141 D Sbjct: 340 SD 341 >gi|257486564|ref|ZP_05640605.1| GTP-binding protein Era [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 149 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 1/82 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R G VA+VG N GKSTL+N +G K++I + K QTTR + GI +E Q +++DTPG Sbjct: 7 TRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGAVQAIYVDTPG 66 Query: 80 IF-NAKDSYHKLMIRLSWSTIK 100 + N + + ++ M + + + +K Sbjct: 67 MHKNGEKALNRYMNKTASAALK 88 >gi|90023653|ref|YP_529480.1| tRNA modification GTPase TrmE [Saccharophagus degradans 2-40] gi|123395362|sp|Q21DG1|MNME_SACD2 RecName: Full=tRNA modification GTPase mnmE gi|89953253|gb|ABD83268.1| tRNA modification GTPase trmE [Saccharophagus degradans 2-40] Length = 456 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 10/170 (5%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N ++IVT+ TTR ++R + + +DT G Sbjct: 215 RDGMKVVIAGRPNAGKSSLLNALAEKDIAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 274 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS--HRELKVNIH-DLLKEIAKRSSRLILI 136 + ++ D ++ I +W I+ AD + L++D+ + +L VN+H A + +L +I Sbjct: 275 LRDSPDHVEQIGIERAWGEIESADRILLLIDTTDNSQLDVNVHWPEFTSNAAYAKKLTVI 334 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID E + + +T +SA G G D + +L S + Sbjct: 335 YNKID----ESGFSTTNHTSDAPY--QTLPLSAKTGAGLDTLKAHLKSVM 378 >gi|167037254|ref|YP_001664832.1| GTP-binding protein EngA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256752010|ref|ZP_05492879.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|320115673|ref|YP_004185832.1| ribosome-associated GTPase EngA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687651|sp|B0K8N3|DER_THEP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166856088|gb|ABY94496.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749120|gb|EEU62155.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|319928764|gb|ADV79449.1| ribosome-associated GTPase EngA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 439 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 10/181 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 V++VG N GKSTL N+ +G ++SIV K TR + G V + + + +DT G+ Sbjct: 3 GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNVEWLDKKFILVDTGGLD 62 Query: 81 FNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 NA+D + K+ +++ + I +D++ +VD+ L ++ + + +IL+ NK Sbjct: 63 PNAEDILFSKVRLQVE-AAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNK 121 Query: 140 IDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D K P + + + +SA+ G G ++L+ + LP Y+ + Sbjct: 122 VDSFKEMPPTYYDFFSLG-----LGNPIPISASNGLGIGELLDEVVKKLPQEELEYTEET 176 Query: 198 I 198 I Sbjct: 177 I 177 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+LVN+ +G + IV++ TTR + S+ V +DT GI Sbjct: 179 IAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + + + I+ +DI L++D+ + + +I+++NK D Sbjct: 239 RISESIERYSVLRALAAIERSDICLLMIDATEGPTEQDTKIAGYAFENGKGIIIVVNKWD 298 Query: 142 CVK 144 +K Sbjct: 299 AIK 301 >gi|145637307|ref|ZP_01792968.1| tRNA modification GTPase [Haemophilus influenzae PittHH] gi|145269559|gb|EDK09501.1| tRNA modification GTPase [Haemophilus influenzae PittHH] Length = 452 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS V++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESVDLSKVRSEFLAKLPSTLPVTMVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|312864738|ref|ZP_07724969.1| tRNA modification GTPase TrmE [Streptococcus downei F0415] gi|311099865|gb|EFQ58078.1| tRNA modification GTPase TrmE [Streptococcus downei F0415] Length = 456 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 220 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDVAGTTRDVIEEYVNIKGVPLKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S + AD+V LV++ L DLL +I+K + R+ILI NK Sbjct: 280 IRETDDLVEKIGVERSRKALAEADLVLLVLNGSENLSQQDRDLL-DISKEAKRIILI-NK 337 Query: 140 IDCVKPERL 148 D P+++ Sbjct: 338 TDL--PQKI 344 >gi|212550616|ref|YP_002308933.1| tRNA modification GTPase TrmE [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548854|dbj|BAG83522.1| tRNA modification GTPase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 464 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G TN GKSTL+N + + +IV+ TTR I+ +++ F+DT GI N K Sbjct: 225 VVIIGETNVGKSTLLNHLLNEEKAIVSEIHGTTRDIIEDVINISGIAFRFIDTAGIRNTK 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS------RLILILN 138 + L I ++ IK A IV ++D+ + + +K IA R S +LI+I N Sbjct: 285 NEIELLGIERTYQKIKKASIVIWMIDATK-----FNKEIKHIADRISPLIMDKKLIVIFN 339 Query: 139 KID 141 KID Sbjct: 340 KID 342 >gi|104780244|ref|YP_606742.1| GTP-binding protein EngA [Pseudomonas entomophila L48] gi|166225841|sp|Q1IEH7|DER_PSEE4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|95109231|emb|CAK13928.1| GTP-binding protein EngA [Pseudomonas entomophila L48] Length = 488 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G S + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSYILIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD V +VD+ + + + + KR+ IL+ NKID + Sbjct: 64 EVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKEAILVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + +AE + + + V+ ++G G + ++ + +P P Sbjct: 124 DAD--VARAEFSP--LGMGNAIPVAGSQGRGINALMEAVLGHIPRDP 166 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + +V + TTR + + F+DT G+ Sbjct: 195 IAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTTRDSIYIPFERDGEKYTFIDTAGVRKRG 254 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R ++I LNK Sbjct: 255 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALDAGRAVVIALNK 312 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D ++P ER + E+ +L F++ +SA G G Sbjct: 313 WDGMEPGERDYVKTELERRLFFVDFADIHFISALHGTGV 351 >gi|190171170|gb|ACE63655.1| ThdF [Citrobacter sp. NZ3872_90] Length = 439 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L + + LV +SA G G D + N+L Sbjct: 313 IARLPAKLPITVVRNKADITGETLGLSEVN-GHSLV------RLSARTGEGVDVLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|301299788|ref|ZP_07206030.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852601|gb|EFK80243.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ACS-116-V-Col5a] Length = 464 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR ++ V+ + + +DT G Sbjct: 224 REGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S I+ AD+V LV+++ EL +L++ A + I+ILNK Sbjct: 284 IRETEDKVERIGVERSRKAIEQADLVMLVLNASEELTDEDKELIQ--ATSGKKRIVILNK 341 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P++L + +LV ++ S K G D Sbjct: 342 TDL--PQKL--NMDEVRELVPEDELITTSVLKKTGVD 374 >gi|90417497|ref|ZP_01225420.1| hypothetical protein GB2207_07462 [marine gamma proteobacterium HTCC2207] gi|90330738|gb|EAS46017.1| hypothetical protein GB2207_07462 [marine gamma proteobacterium HTCC2207] Length = 467 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ ++V + TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVANYSGLTRDRKYGDGEMHDRRFMVIDTGGISGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + ADIV +VD + H + + + K++ ++ L+ NKID + Sbjct: 64 EEGIDVGMAEQSLLAMDEADIVLFIVDCRSGIIAADHMIAETLRKKNRKVYLVANKIDGL 123 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P A +A+ +L F F +AT G G ++ L P Sbjct: 124 DP-----AAALADFYQLGF-SGMFPTTATHGRGVRSMMEELLEPYP 163 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 6/181 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 + +VG N GKSTLVNR +G +V + TTR V + +DT GI Sbjct: 178 IGVVGRPNVGKSTLVNRLLGEDRVVVYDEAGTTRDSVYIDYERHGKKYTLIDTAGIRKRK 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N K + K I + I A++V L+VD+H L L+ + L++ +NK D Sbjct: 238 NIKLAIEKFSIVKTLQAIDDANVVVLMVDAHEGLVEQDLHLMGSVIDAGRGLVIGVNKWD 297 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ++PE+ + + +I +L F E +SA G G ++ + + + A SA ++ Sbjct: 298 GLEPEKREKIKEDIKRRLRFAEFADVHYISAMHGTGVGNLYDSIENAYRAATDALSASRL 357 Query: 199 S 199 + Sbjct: 358 T 358 >gi|157964067|ref|YP_001504101.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345] gi|189036209|sp|A8HAH9|MNME_SHEPA RecName: Full=tRNA modification GTPase mnmE gi|157849067|gb|ABV89566.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345] Length = 453 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DGVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ K+ I +W IK AD V +VD ++ H++ + Sbjct: 260 LDGMPLHIIDTAGLRDTVDTVEKIGIERAWDEIKTADRVLFMVDGTTTAAIDPHEIWPDF 319 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + + Q E + + + +SA G G +D+ +L Sbjct: 320 IDRLPSNLGVTVVRNKADLTGEDLSVTQ-EAGHSV------YRISAKTGLGVEDLKQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|73856514|gb|AAZ89221.1| putative GTP-binding factor [Shigella sonnei Ss046] Length = 503 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 17 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 76 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 77 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 136 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L + L PW+ Sbjct: 137 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLERV-----LLPWM 176 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 218 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 277 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ ++V LV+D+ + LL I L++++NK D Sbjct: 278 KITDAVEKFSVIKTLQAIEDTNVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 337 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 338 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 378 >gi|68535955|ref|YP_250660.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium jeikeium K411] gi|68263554|emb|CAI37042.1| cytidylate kinase [Corynebacterium jeikeium K411] Length = 777 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 20/175 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + + + DT G Sbjct: 344 TVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWSGRRFWVQDTGGWDPD 403 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + + ++ AD++ VVDS KV I + IA++ R +I++ NK Sbjct: 404 AKGIHAAIARQAETAMETADVIVFVVDS----KVGITSTDEVIARKLQRSKVPVIVVANK 459 Query: 140 IDCVKPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D A++ + F ++ + VSA G G DV++ + P P Sbjct: 460 CDA--------DAQLGDVAEFWALGLDNPYPVSAQHGKGAADVMDEVLRVFPEHP 506 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 11/151 (7%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F EH + S VALVG N GKS+L+N+ G + S+V + TT V IV + Sbjct: 502 FPEHPRELSVVSGPRRVALVGRPNVGKSSLLNKITGEERSVVNNVAGTTVDPVDSIVELE 561 Query: 69 ESQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 E F+DT GI + Y L R S I A++V +VD+ + + Sbjct: 562 EKTWKFVDTAGIRKKTKQARGHEFYASLRTR---SAIDAAEVVVFLVDASEPIAEQDQRV 618 Query: 123 LKEIAKRSSRLILILNKIDCVKPER--LLEQ 151 L+ I L++ NK D V +R LLE+ Sbjct: 619 LRMILDSGRALVVAYNKWDLVDEDRRELLER 649 >gi|190171172|gb|ACE63656.1| ThdF [Citrobacter sp. OD1158_06] Length = 439 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L + + LV +SA G G D + N+L Sbjct: 313 IARLPAKLPITVVRNKADITGETLGLSEVN-GHSLV------RLSARTGEGVDVLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|330837623|ref|YP_004412264.1| GTP-binding protein engA [Spirochaeta coccoides DSM 17374] gi|329749526|gb|AEC02882.1| GTP-binding protein engA [Spirochaeta coccoides DSM 17374] Length = 547 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL N VG +VSIV+ TTR +V G K + LDT GI Sbjct: 198 LAVLGKPNTGKSTLTNLLVGQEVSIVSDIPGTTRDVVSGDFLYKGTPFTILDTAGIRRKS 257 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + TI +++V L++D+ + + + I +R ++L+LNKID Sbjct: 258 KVDEDVEYYSVNRAIKTIDESNVVLLMIDAQEGIADQDKKIAQLIVRRGKGVVLVLNKID 317 Query: 142 CV 143 + Sbjct: 318 AL 319 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE----KESQIVFLDTPG 79 +A+VG N GKSTL NR VG + I T + R VSE ++ +DT G Sbjct: 23 LIAIVGRPNTGKSTLFNRLVGKRRMI----TDPTPGVTRDPVSEHWMLGGHSVMLVDTGG 78 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + ++ L+ S S ++ A ++ L+++ L L+K + + +L++NK Sbjct: 79 VKLDREGLDHLVSEKSLSILERAHVLILLLECT-TLTPEDEMLVKHLRPYGDKTVLVVNK 137 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +D E L+ + ++ +SA G G D+ + L L L Sbjct: 138 VDDYNRETLVWNYHS----LGYQRVVGISAAHGLGIGDLEDTLMGMLDL 182 >gi|90961107|ref|YP_535023.1| tRNA modification GTPase TrmE [Lactobacillus salivarius UCC118] gi|227892406|ref|ZP_04010211.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741] gi|122449446|sp|Q1WVH7|MNME_LACS1 RecName: Full=tRNA modification GTPase mnmE gi|90820301|gb|ABD98940.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Lactobacillus salivarius UCC118] gi|227865813|gb|EEJ73234.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741] Length = 464 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR ++ V+ + + +DT G Sbjct: 224 REGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S I+ AD+V LV+++ EL +L++ A + I+ILNK Sbjct: 284 IRETEDKVERIGVERSRKAIEQADLVMLVLNASEELTDEDKELIQ--ATSGKKRIVILNK 341 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P++L + +LV ++ S K G D Sbjct: 342 TDL--PQKL--NMDEVRELVPEDELITTSVLKKTGVD 374 >gi|312796099|ref|YP_004029021.1| GTP-binding protein hflX [Burkholderia rhizoxinica HKI 454] gi|312167874|emb|CBW74877.1| GTP-binding protein hflX [Burkholderia rhizoxinica HKI 454] Length = 415 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 14/188 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ +R+ V+LVG TNAGKSTL N A+ T + R + + +V D Sbjct: 185 RERNRTLSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGEAGNVVVSD 244 Query: 77 TPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRS 130 T G +D H+L+ R + HAD++ +VD+ ++ + ++D+L+EI S Sbjct: 245 TVGFI--RDLPHQLVAAFRATLEETVHADLLLHIVDAASAVRADQIEQVNDVLREIGAAS 302 Query: 131 SRLILILNKIDCVKPERLLEQAEIA--NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 IL+ NKID V PE L +A+ N+ I + F+ SA G G D L + + L Sbjct: 303 IPQILVFNKIDQV-PE-LASRADRVERNEYGNITRVFL-SARTGQGL-DALRDAVAEVAL 358 Query: 189 APWVYSAD 196 + D Sbjct: 359 GAQAFKRD 366 >gi|153830815|ref|ZP_01983482.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39] gi|148873699|gb|EDL71834.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39] Length = 453 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 12/169 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D+ K+ I +W I+ AD V +VD N D+ + R + + +I NK D Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDGTTTEATNPQDIWPDFVDRLPENIGITVIRNKAD 337 Query: 142 CV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +P + N+ I +SA GHG D + +L + A Sbjct: 338 QTGEPLGICH----VNQPTLIR----LSAKTGHGVDALRQHLKECMGFA 378 >gi|160877621|ref|YP_001556937.1| tRNA modification GTPase TrmE [Shewanella baltica OS195] gi|189036207|sp|A9KX19|MNME_SHEB9 RecName: Full=tRNA modification GTPase mnmE gi|160863143|gb|ABX51677.1| tRNA modification GTPase TrmE [Shewanella baltica OS195] gi|315269820|gb|ADT96673.1| tRNA modification GTPase TrmE [Shewanella baltica OS678] Length = 453 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ ++ I +W+ I AD V +VD V+ H + + Sbjct: 260 LDGMPLHIIDTAGLRDTNDTVEQIGIERAWNEINSADRVLFMVDGTTTAAVDPHTIWPDF 319 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + +I NK D + ++ + + + + +SA G G +++ +L Sbjct: 320 VDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYS-------VYRISAKTGLGVEELKQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|47568683|ref|ZP_00239380.1| tRNA modification GTPase TrmE [Bacillus cereus G9241] gi|228988713|ref|ZP_04148798.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47554671|gb|EAL13025.1| tRNA modification GTPase TrmE [Bacillus cereus G9241] gi|228771025|gb|EEM19506.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 458 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 7/143 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQAEIANKLV 159 D + ER++E AE N+++ Sbjct: 336 TDLPQAIDMERVIELAE-GNRVI 357 >gi|38233787|ref|NP_939554.1| GTP-binding protein EngA [Corynebacterium diphtheriae NCTC 13129] gi|38200048|emb|CAE49724.1| Putative GTP-binding protein [Corynebacterium diphtheriae] Length = 547 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR + + + DT G Sbjct: 114 TVAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRISYLADWGGRRFWVQDTGGWDPN 173 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H ++ R + + + AD++ +VVD+ + + +++ K +IL+ NK D Sbjct: 174 VKGIHAVIARQAETAMATADVIVMVVDTKVGITETDSVMARKLQKSEVPVILVANKFDS- 232 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + AE + + + VSA G G DVL + + P P Sbjct: 233 -DSQYADMAEF--YALGLGDPWPVSAQHGRGGADVLEQILAAFPETP 276 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ G S+V + TT V IV + F+DT G + Sbjct: 288 VALVGKPNVGKSSLLNKMSGEDRSVVDNVSGTTVDPVDSIVKLDKHLWKFIDTAGLRKKV 347 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A+I ++DS + +L I L+L+ NK Sbjct: 348 KNAQGHEYYASLRTR-GVIDAAEICIFMIDSSEPVSEQDQRVLAMILDAGKALVLVFNKW 406 Query: 141 DCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 D ++ +R E + EI +L I K +SA G + Y+ L Sbjct: 407 DLMEEDRRWELEREIDLQLAHIPWVKRINISAKTGRALQRLEPYMLEAL 455 >gi|84501097|ref|ZP_00999332.1| GTP-binding protein HflX [Oceanicola batsensis HTCC2597] gi|84391164|gb|EAQ03582.1| GTP-binding protein HflX [Oceanicola batsensis HTCC2597] Length = 424 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 10/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFN 82 VALVG TNAGKSTL NR GA+V T +R + + +++ DT G + Sbjct: 205 IVALVGYTNAGKSTLFNRLTGAEVLAKDMLFATLDPTMRRVRLPNNGPEVILSDTVGFIS 264 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLIL-IL 137 + R + + AD++ + D SH E K ++ D+L ++ +L + Sbjct: 265 DLPTQLVAAFRATLEEVLEADLILHIRDISHPEAEEQKADVEDILSDLGLPEEVPVLEVW 324 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK+D + PE A A + + TF++SA G G D +L+ + TL Sbjct: 325 NKVDRLPPEDAGALARRAER----DGTFVISAVTGAGLDPLLDAVERTL 369 >gi|260578662|ref|ZP_05846570.1| ribosome-associated GTPase EngA [Corynebacterium jeikeium ATCC 43734] gi|258603159|gb|EEW16428.1| ribosome-associated GTPase EngA [Corynebacterium jeikeium ATCC 43734] Length = 777 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 20/175 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + + + DT G Sbjct: 344 TVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWSGRRFWVQDTGGWDPD 403 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + + ++ AD++ VVDS KV I + IA++ R +I++ NK Sbjct: 404 AKGIHAAIARQAETAMETADVIVFVVDS----KVGITSTDEVIARKLQRSKVPVIVVANK 459 Query: 140 IDCVKPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D A++ + F ++ + VSA G G DV++ + P P Sbjct: 460 CDA--------DAQLGDVAEFWALGLDNPYPVSAQHGKGAADVMDEVLRVFPEHP 506 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 11/151 (7%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F EH + S VALVG N GKS+L+N+ G + S+V + TT V IV + Sbjct: 502 FPEHPRELSVVSGPRRVALVGRPNVGKSSLLNKITGEERSVVNNVAGTTVDPVDSIVELE 561 Query: 69 ESQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 E F+DT GI + Y L R S I A++V +VD+ + + Sbjct: 562 EKTWKFVDTAGIRKKTKQARGHEFYASLRTR---SAIDAAEVVVFLVDASEPIAEQDQRV 618 Query: 123 LKEIAKRSSRLILILNKIDCVKPER--LLEQ 151 L+ I L++ NK D V +R LLE+ Sbjct: 619 LRMILDSGRALVVAYNKWDLVDEDRRDLLER 649 >gi|257784531|ref|YP_003179748.1| small GTP-binding protein [Atopobium parvulum DSM 20469] gi|257473038|gb|ACV51157.1| small GTP-binding protein [Atopobium parvulum DSM 20469] Length = 441 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 11/163 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR K SIV+ TTR + ++ K + I +DT GI Sbjct: 181 LAIIGRPNVGKSSLANRLANKKRSIVSDVAGTTRDAIDTMIEWKGTPIRLVDTAGIRKKS 240 Query: 85 D-----SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 Y+ L+ L + ADI LVVD+ + L +R L+L+LNK Sbjct: 241 QVHEDVEYYSLVRGL--QAMDRADICLLVVDASVGVTEQDQKLANMAVERGCALVLLLNK 298 Query: 140 IDCVKPERLLEQ--AEIANKLVFIE--KTFMVSATKGHGCDDV 178 D + E ++ A +A +L F + VSA G D V Sbjct: 299 WDLIDSETKRDEVAASVAKRLAFAPWIASINVSALTGRSIDKV 341 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 7/168 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 VA+VG N GKSTLVNR + +IV TR + +DT GI Sbjct: 6 VAIVGRPNVGKSTLVNRIAEKRDAIVHESRGVTRDRSYHDADWNGREFKLIDTGGIESIK 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D + + + AD++ VVD + ++ + + K + + L++NK Sbjct: 66 SQDRFAPHIREQALLACDEADVIVFVVDGTTGVTDEDEEVARIVRKSTKPVFLVVNK--- 122 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 K EQ + + + +SA+ GHG D+L+ + + P A Sbjct: 123 -KDNPATEQDGLWDFYALGCGEPMPLSASHGHGTGDLLDDIVNAFPEA 169 >gi|220909026|ref|YP_002484337.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425] gi|254811474|sp|B8HSJ3|MNME_CYAP4 RecName: Full=tRNA modification GTPase mnmE gi|219865637|gb|ACL45976.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425] Length = 460 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + + +IVT TTR +V + + LDT G Sbjct: 220 RTGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTELPGTTRDVVESYLVVGGIPVQVLDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + AD+V LV+D+ + ++ +RS LIL++NK Sbjct: 280 IRETSDQVEQIGVERSHKAAQAADLVLLVIDAQTGWTAEDQAIYTQVQERS--LILVINK 337 Query: 140 IDCV 143 ID V Sbjct: 338 IDLV 341 >gi|325272131|ref|ZP_08138563.1| GTP-binding protein Der [Pseudomonas sp. TJI-51] gi|324102727|gb|EGC00142.1| GTP-binding protein Der [Pseudomonas sp. TJI-51] Length = 487 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G S + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD V +VD+ + + + + KR+ IL+ NKID + Sbjct: 64 EVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKEAILVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + +AE + + + V+ ++G G + ++ + LP Sbjct: 124 DAD--VARAEFSP--LGMGNAIPVAGSQGRGINALMEAVLGHLP 163 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 10/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + +V + TTR + + F+DT G+ Sbjct: 195 IAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTTRDSIYIPFERDGEKYTFIDTAGVRKRG 254 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R I+I LNK Sbjct: 255 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRAIVIALNK 312 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 D ++P ER + E+ +L F++ +SA G G ++ Sbjct: 313 WDGMQPGERDYVKTELERRLFFVDFADIHFISALHGTGVGNL 354 >gi|312148299|gb|ADQ30958.1| ribosome-associated GTPase EngA [Borrelia burgdorferi JD1] Length = 433 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDIKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + + +++ + K SS+++L+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KECL---AHEFHNLGF-KRYFLVSAAHCRGITKLRDFL 159 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 12/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G +++IV+ + TTR ++ + +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D +L + + K+ ++++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYVTKKGKGIVIVFSK 293 Query: 140 IDCV-KPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVL 179 D V +P+ E + K F F +S K G D + Sbjct: 294 WDLVDEPKGYFEALKSHVKFFFPILNFAPIFRISVHKRIGLDSLF 338 >gi|307566127|ref|ZP_07628585.1| tRNA modification GTPase TrmE [Prevotella amnii CRIS 21A-A] gi|307345315|gb|EFN90694.1| tRNA modification GTPase TrmE [Prevotella amnii CRIS 21A-A] Length = 447 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G TN GKSTL+N +G + +IV++ TTR ++ + F+DT GI Sbjct: 218 AVAIIGKTNVGKSTLLNALLGEERAIVSNIEGTTRDVIEDVTEINGISFRFIDTAGIRQT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D KL I ++ + A +V V+D + K D+ K++ +R I++ NK+D + Sbjct: 278 TDEVEKLGIERTYKMLDKAQMVIWVIDDNPSRK-EYEDIKKKVGERP--FIIVRNKVDTI 334 >gi|258511668|ref|YP_003185102.1| ribosome-associated GTPase EngA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478394|gb|ACV58713.1| ribosome-associated GTPase EngA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 444 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 7/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR VG +VSIV TR + G +DT GI + Sbjct: 5 VVAIVGRANVGKSTLFNRLVGRRVSIVEDTPGVTRDRIYGKSEWNGVPFRVIDTGGIEMD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +D L+ + I AD++ VVD R+ + + ++ +R+ + ++L +NK+D Sbjct: 65 EEDEMGNLIRVQAQIAIDEADVILFVVDG-RQGVTQADEHVAQVLRRAHKPVVLGVNKLD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 V+ L + +L F E SA G G D+L+ + + LP A Sbjct: 124 HVEQHALSYE---FYRLGFGEP-IPFSAEHGQGTGDLLDAVVAALPKA 167 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A +G N GKS+LVNR +G + +V+ TTR V + + +DT G+ Sbjct: 179 IAFIGRPNVGKSSLVNRLLGEERVMVSPVAGTTRDAVDTPLERDGQTYMLVDTAGMRRKG 238 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSH 112 Y ++ + + + AD+ +V+D+ Sbjct: 239 KVYERIEKYSVLRALRALDRADVAFVVLDAQ 269 >gi|255600342|ref|XP_002537439.1| gtpase mss1/trme, putative [Ricinus communis] gi|223516353|gb|EEF24944.1| gtpase mss1/trme, putative [Ricinus communis] Length = 416 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 23/184 (12%) Query: 18 DNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D +R G V L+G N GKS+L+N G +V+IVT TTR ++ ++ + Sbjct: 210 DQARQGVLLREGINVVLIGQPNVGKSSLLNALSGEEVAIVTPIAGTTRDTIKSVIQIEGV 269 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL----KVNIHDLLKEI 126 + +DT G+ +D+ ++ I +W I+ A + L+VDS + K +H L E+ Sbjct: 270 PLHVIDTAGLRETEDTVEQVGIARTWKAIETAHVALLLVDSQHGIGAQEKAILHKLPPEV 329 Query: 127 AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K + + NKID + +E+ E E+ +SA G G + L + Sbjct: 330 KK-----VWVHNKIDVSRETSRIEKHE-------NEQHVFLSAKTGDGIASLQKTLLEIV 377 Query: 187 PLAP 190 P Sbjct: 378 GYQP 381 >gi|218281199|ref|ZP_03487723.1| hypothetical protein EUBIFOR_00286 [Eubacterium biforme DSM 3989] gi|218217587|gb|EEC91125.1| hypothetical protein EUBIFOR_00286 [Eubacterium biforme DSM 3989] Length = 283 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N + +IVT TTR +V G + Q+ +DT GI + D Sbjct: 64 IVGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDLVEGQIHIGSVQLNLIDTAGIRESNDK 123 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ I S +K A +V LV D +EL LL E+ K RLI I NK+D Sbjct: 124 IEQIGIEKSQEKLKDAKLVLLVFDGSKELDEEDKQLL-ELTKDKMRLI-IYNKLD 176 >gi|190171168|gb|ACE63654.1| ThdF [Citrobacter freundii] Length = 439 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L + + LV +SA G G D + N+L Sbjct: 313 IARLPAKLPITVVRNKADITGETLGLSEVN-GHSLV------RLSARTGEGVDVLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|300920666|ref|ZP_07137077.1| ribosome-associated GTPase EngA [Escherichia coli MS 115-1] gi|300412347|gb|EFJ95657.1| ribosome-associated GTPase EngA [Escherichia coli MS 115-1] Length = 499 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYSLGLGEIYPIAACHGRGVLSLLEHV-----LLPWM 172 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|84503431|ref|ZP_01001491.1| GTP-binding protein EngA [Oceanicola batsensis HTCC2597] gi|84388218|gb|EAQ01170.1| GTP-binding protein EngA [Oceanicola batsensis HTCC2597] Length = 494 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 7/161 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V ++ TR + G + +DT G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDNQPGVTRDLREGDARLGHLKFTVIDTAGLEEA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D S M +L+ + AD+ V+D+ + H + KRS+ +IL NK + Sbjct: 64 TDESLQGRMRKLTERAVGMADVCLFVIDARVGVTPADHVFADILRKRSAHVILAANKAEG 123 Query: 143 VKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L E E+ + + +SA G G +++ L Sbjct: 124 RAGEAGLFEAYELG-----LGEPLRLSAEHGEGMGELIEVL 159 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 26/184 (14%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 ++R VA+VG NAGKSTL+NR +G + + + TR + + + + DT Sbjct: 204 DARPLQVAVVGRPNAGKSTLINRILGEERLLTGPEAGITRDSISLRLDWEGLPVRLFDTA 263 Query: 79 GI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLI 134 G+ +D KL + +K A++V +++D+ + DL + ++A+R R + Sbjct: 264 GMRKRAKVQDKLEKLSVSDGLRAVKFAEVVVVLLDA--AIPFEQQDLRIADLAEREGRAV 321 Query: 135 LI-LNKIDCVKP------------ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 ++ +NK D ERLL Q A VSA G G D + Sbjct: 322 VVAVNKWDLEDDKQGKLRDLRESFERLLPQLRGA-------PLVTVSARTGRGLDRLRTA 374 Query: 182 LCST 185 + S Sbjct: 375 IVSA 378 >gi|167957385|ref|ZP_02544459.1| small GTP-binding protein [candidate division TM7 single-cell isolate TM7c] gi|169835713|ref|ZP_02868901.1| small GTP-binding protein [candidate division TM7 single-cell isolate TM7a] Length = 473 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 5/168 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S+ VAL+G N GKS+L NR V A+ +IV + TTR V G V K+ Q +DT G Sbjct: 3 SKLPTVALIGQANVGKSSLFNRMVRAQQAIVAREAGTTRDSVIGKVEYKKHQFWLVDTAG 62 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + D + + + AD++ +VVDS + K+ K +IL+LNK Sbjct: 63 LKDPNDDFEATIQDQITEASESADVILVVVDSIMYPSDQDKIVAKKALKSKKPVILVLNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + L E K + I+ SA G ++L+ + +P Sbjct: 123 TDL---KGSLPVDEF--KRLGIKTVIQTSAEHNRGIANLLDIVTEKMP 165 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VAL+G N GKSTL N G + ++V + TTR I R V ++ I LDT GI Sbjct: 178 VALIGRPNVGKSTLFNALAGKQQALVANIAGTTRDINRVQVRYNQNTIELLDTAGIRRQG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 + K + + I+ +DI L++D + EL V + L I + + LI++++K Sbjct: 238 KQETGIEKFSVLRTLQAIEESDICLLLLDVN-ELNVALDQRLAGIINDTGKGLIVVVSKW 296 Query: 141 DCVKPERLLEQAEIANKLVF 160 D V+ + + +A K+ + Sbjct: 297 DSVEGKDAFTRDALAPKISY 316 >gi|148828171|ref|YP_001292924.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittGG] gi|166200481|sp|A5UID5|MNME_HAEIG RecName: Full=tRNA modification GTPase mnmE gi|148719413|gb|ABR00541.1| tRNA modification GTPase [Haemophilus influenzae PittGG] Length = 452 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS V++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|301059965|ref|ZP_07200844.1| ribosome-associated GTPase EngA [delta proteobacterium NaphS2] gi|300445932|gb|EFK09818.1| ribosome-associated GTPase EngA [delta proteobacterium NaphS2] Length = 435 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +A+VG N GKSTL NR +K ++V + TR + G +S + Q+ +DT G + Sbjct: 4 VIAIVGRPNVGKSTLFNRLTRSKRALVDDRPGITRDRLHGTISHEGLQMTLVDTGGFEDL 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-SSRLILILNKID 141 +D K + + I+ AD + +VD RE + D + + +R R+ L++NKID Sbjct: 64 GQDPLQKGVRAQVETAIQEADRIIFMVDG-REGVLPGDDEMAHLLRRMQKRVFLVVNKID 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E L A +L + + + +SA G+G +LN L L Sbjct: 123 GPEKEHL---AGEFYQLGY-DAVYTLSAAHGYGVKALLNDLVKGL 163 Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+L+NR + +V+ TTR V S + + +DT GI Sbjct: 178 VAVLGKPNVGKSSLINRILKTDRLVVSELPGTTRDTVDSAFSYGGREYLLIDTAGIRRKS 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ + L++D + + ++ ++L +NK D Sbjct: 238 RVREKVDKFSMIKAIKSLDRCHVAVLLLDGAEGVSDQDARICGYALEKGRGIVLAINKWD 297 Query: 142 CVK 144 VK Sbjct: 298 LVK 300 >gi|288905136|ref|YP_003430358.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain [Streptococcus gallolyticus UCN34] gi|288731862|emb|CBI13427.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain [Streptococcus gallolyticus UCN34] Length = 457 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD+V LV++S L N L E++K S+R+IL LNK Sbjct: 281 IRETDDVVEKIGVERSKKALEEADLVLLVLNSSEPL-TNQDRALLELSKDSNRIIL-LNK 338 Query: 140 IDCVKPERL 148 D PE++ Sbjct: 339 TDL--PEKI 345 >gi|94267274|ref|ZP_01290827.1| Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] gi|93452066|gb|EAT02754.1| Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] Length = 453 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA +G N GKS+L+NR +G++ +V+ TTR V ++ E Q +DT GI Sbjct: 191 VAFIGRPNVGKSSLINRLLGSERMVVSEVPGTTRDSVDSLLIRGEKQYRLIDTAGIRRKG 250 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++S K + + + ++ D+ LV+D+ + ++ +R +++LNK D Sbjct: 251 KVRESVEKFSVMRALAALERCDLALLVIDAAEGITEQDTKVIGYGLERGRACLVLLNKWD 310 Query: 142 CVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +K + RLL + E A V +SA G G +L Sbjct: 311 LLKDDRRQQKRLLAEVERAVHFVGYAPVHKLSALSGSGVGRLL 353 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKS+L NR G + +IV TR VS + + +DT GI Sbjct: 9 LVALVGRPNVGKSSLFNRIAGGRKAIVDPTPGVTRDRHYQQVSWNQRHFMLIDTGGIEGD 68 Query: 84 KDS---YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI-LILNK 139 K S ++L+ S + AD++ L++D+ + + + + ++ EI +RS + + ++NK Sbjct: 69 KSSEVPINRLIGEQSRQAVAEADVILLLLDARQGVTPDDYQVV-EILRRSGKPVHYLVNK 127 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ID PE++ + +L + + + +SA+ G G ++L+ + + L Sbjct: 128 IDA--PEQVDKLLPTFYEL-GVPQLWPLSASHGLGLAELLDAVVAEL 171 >gi|306833320|ref|ZP_07466448.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338] gi|304424517|gb|EFM27655.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338] Length = 457 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD+V LV++S L LL E++K S+R+IL LNK Sbjct: 281 IRETDDVVEKIGVERSKKALEEADLVLLVLNSSEPLTDQDRALL-ELSKDSNRIIL-LNK 338 Query: 140 IDCVKPERL 148 D PE++ Sbjct: 339 TDL--PEKI 345 >gi|71279565|ref|YP_270897.1| GTP-binding protein EngA [Colwellia psychrerythraea 34H] gi|123733686|sp|Q47WC5|DER_COLP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71145305|gb|AAZ25778.1| GTP-binding protein EngA [Colwellia psychrerythraea 34H] Length = 498 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR ++ ++V TR G +E + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRSRDALVADYPGLTRDRQYGQAEVEEHPFIVIDTGGINGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S I+ AD V +VD+ L H + + K++ ++ ++ NKID + Sbjct: 64 EQGIDVKMAEQSLMAIEEADAVLFLVDARDGLTAADHGIADHLRKQNKKIFVVANKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + + AE + L E ++A G G +L T+ L P + Sbjct: 124 HGDSAV--AEFYS-LGLGEHVHQIAAAHGRGVTQLL-----TIALTPHI 164 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A++G N GKSTL NR +G + +V TTR V + + +DT GI Sbjct: 215 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYIPMERNGREYTLIDTAGIRRRK 274 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N D K + + I+ A++ L++D+ + LL I + L+L +NK D Sbjct: 275 NVTDVVEKYSVIKTLRAIEDANVCLLIIDAQEGISDQDLSLLGFILEAGRSLVLAVNKWD 334 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 ++ E+ + E+ +L FI+ + +SA G G Sbjct: 335 GLEDHEKDRIKTELDRRLGFIDFARVHFISALHGTGV 371 >gi|289422583|ref|ZP_06424426.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L] gi|289157155|gb|EFD05777.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L] Length = 459 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N +G +IVT TTR ++ V+ K + +DT G Sbjct: 219 REGLKTAILGKPNVGKSSLMNWILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S +K +D+V +V+DS REL+ + ++L I + + ++++NK Sbjct: 279 IRETDDIVEKIGVEKSRDHMKSSDLVLVVLDSSRELEEDDLEILDAINPK--KTLVLINK 336 Query: 140 IDC 142 ID Sbjct: 337 IDL 339 >gi|90194068|gb|ABD92595.1| ThdF [Histophilus somni] Length = 424 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNTLAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +A D K+ IR +W I+ AD + L++DS Sbjct: 263 LRDATDEVEKIGIRRAWDEIEQADRILLILDS 294 >gi|325978110|ref|YP_004287826.1| tRNA modification GTPase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178038|emb|CBZ48082.1| tRNA modification GTPase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 457 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD+V LV++S L N L E++K S+R+IL LNK Sbjct: 281 IRETDDVVEKIGVERSKKALEEADLVLLVLNSSEPL-TNQDRALLELSKDSNRIIL-LNK 338 Query: 140 IDCVKPERL 148 D PE++ Sbjct: 339 TDL--PEKI 345 >gi|145638177|ref|ZP_01793787.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII] gi|145272506|gb|EDK12413.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII] Length = 452 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ NA Sbjct: 217 VVIAGRPNAGKSSLLNALAGHEAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|226357377|ref|YP_002787117.1| GTP-binding protein EngA [Deinococcus deserti VCD115] gi|259645869|sp|C1D094|DER_DEIDV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226319367|gb|ACO47363.1| putative GTP-binding protein [Deinococcus deserti VCD115] Length = 441 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L NR +G + ++V TR G++ +I +DT G+++ Sbjct: 4 VAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEGLMLYHNHRITLVDTGGLWSGD 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + W+ ++ A V V+D L +++ + + +I++ NKID K Sbjct: 64 EWEAAIREKAEWA-MEGAQAVVFVLDPREGLSAADYEVADWLRRVGKPVIVVANKIDSPK 122 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L AE+ L F + +SA G D++L+ + + LP Sbjct: 123 HEVYL--AELWG-LGFGDPV-AISAEHARGLDELLDRVMTHLP 161 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++L+G N GKS+L+N +IV + TTR + + V +DT GI Sbjct: 175 ISLIGRPNVGKSSLLNAITNTDRAIVADQPGTTRDSLDVEWDFGGQRFVLVDTAGIRKKP 234 Query: 85 DSY-HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNKID 141 D+ I+ S + I+ +D++ LVV++ + H+L L +A S + +I+++NK D Sbjct: 235 DTAIEDYAIQRSQAAIQRSDLIWLVVNA---TDMGDHELKLANLAYESGKPVIVVVNKWD 291 Query: 142 CVKPERL 148 V E L Sbjct: 292 LVPDEEL 298 >gi|319775065|ref|YP_004137553.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047] gi|317449656|emb|CBY85862.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047] Length = 452 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ NA Sbjct: 217 VVIAGRPNAGKSSLLNALAGHEAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|237729028|ref|ZP_04559509.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2] gi|226909650|gb|EEH95568.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2] Length = 454 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L + ++ LV +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITGETLGLSEVN-SHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|160900445|ref|YP_001566027.1| GTP-binding proten HflX [Delftia acidovorans SPH-1] gi|160366029|gb|ABX37642.1| GTP-binding proten HflX [Delftia acidovorans SPH-1] Length = 404 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL N V A+ T + R + ++E + + DT G Sbjct: 204 ISLVGYTNAGKSTLFNALVKARAYAADQLFATLDTTTRQLYLNEAQQSVSLSDTVGFI-- 261 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILIL 137 +D H L+ + + AD++ VVD+ E + +LKEI + L+L+ Sbjct: 262 RDLPHGLVDAFQATLQEAIDADLLLHVVDASNPNFPEQIQQVQKVLKEIGAQEVPLVLVF 321 Query: 138 NKIDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLC 183 NK+D V PERL Q + +L + + + F VSA G G + L Sbjct: 322 NKLDAVDPERLPAQLQDQYELDGLPVSRVF-VSARSGEGLPQLRQLLA 368 >gi|262091771|gb|ACY25359.1| GTP-binding protein Era [uncultured actinobacterium] Length = 653 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 4/163 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKSTL+NRF+G + +IV TR V+ + + +DT G Sbjct: 223 VAILGRPNVGKSTLINRFLGRREAIVEDTPGVTRDRVQYECEWGGRRFIIMDTGGWEAKP 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + S ++ AD++ VVD+ L++ + K ILI NK+D Sbjct: 283 DGISVQVSAGSELAMQEADVLAFVVDAQVGALDEDDILVQHLRKAKKPTILIGNKVDG-- 340 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ER +A L E F VSA G G D+L+++ + LP Sbjct: 341 -EREEAEAHGLWSLGLGEPRF-VSALHGRGSGDLLDHIVAVLP 381 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 21/164 (12%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 QD R VAL+G N GKS+L N G +SIV TTR V ++S S F+D Sbjct: 389 QDGYRK--VALIGRPNVGKSSLFNAIAGESLSIVDDAAGTTRDPVDSLLSFGGSTWRFID 446 Query: 77 TPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 T G+ + D Y L + + ++ ++ +V+D+ + ++ + + Sbjct: 447 TAGLKKRANQDSGTDYYASLR---TATALERCEVAVVVLDASEPITEQDLRVITMVEEAG 503 Query: 131 SRLILILNKIDCVKPERL----------LEQAEIANKLVFIEKT 164 +++++NK D V +R L+Q E A ++ KT Sbjct: 504 KAMVIVMNKWDLVDEDRRNQLDREIDRHLDQVEWAQRVNIAAKT 547 >gi|188590674|ref|YP_001922717.1| tRNA modification GTPase TrmE [Clostridium botulinum E3 str. Alaska E43] gi|188500955|gb|ACD54091.1| tRNA modification GTPase TrmE [Clostridium botulinum E3 str. Alaska E43] Length = 456 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 13/161 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V ++G N GKS+L+N + K +IVT TTR I+ ++ I DT G Sbjct: 223 RDGLNVVIIGKPNVGKSSLLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIPIKITDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D+ K+ + S I+ AD++ L++DS R+L+ +++ I ++ I++LNK Sbjct: 283 IRETEDTVEKIGVERSREKIEEADLIILILDSSRDLEEEDKEIINTIKDKNH--IVLLNK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D +R + ++ N++ +SA G+G +++ N Sbjct: 341 TDL---DRKIADIDLDNQI-------KISAKTGYGIEELKN 371 >gi|330998375|ref|ZP_08322199.1| tRNA modification GTPase TrmE [Paraprevotella xylaniphila YIT 11841] gi|329568481|gb|EGG50286.1| tRNA modification GTPase TrmE [Paraprevotella xylaniphila YIT 11841] Length = 464 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 23/183 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TNAGKSTL+N + + +IV+ TTR ++ V+ F+DT GI + Sbjct: 227 VAIVGETNAGKSTLLNTLLNEEKAIVSDIHGTTRDVIEDTVNLSGITFRFIDTAGIRDTH 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSRLILILN 138 D+ + I S+ ++ A+IV VVD+ R+L I L + +LI++LN Sbjct: 287 DTIENMGIARSFHKMEQAEIVLWVVDNTCAEAQIRQLSPRILPLCS-----NKQLIILLN 341 Query: 139 KIDCVKPERLLEQAEIANKLVFIEK---TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 K D P I KL + + T +SA + G ++ N L + P + S+ Sbjct: 342 KSDQASP--------IPTKLSGLPENTVTLSISAKEKTGIQELQNLLVKVASV-PELTSS 392 Query: 196 DQI 198 D I Sbjct: 393 DLI 395 >gi|323705843|ref|ZP_08117415.1| tRNA modification GTPase TrmE [Thermoanaerobacterium xylanolyticum LX-11] gi|323534839|gb|EGB24618.1| tRNA modification GTPase TrmE [Thermoanaerobacterium xylanolyticum LX-11] Length = 458 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ +S K I +DT G Sbjct: 220 REGLNTAIIGKPNVGKSSLLNALLNENRAIVTDIPGTTRDIIEEHLSIKGIPINLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + ++ + S I AD++ + DS R L+ + +D+LK I + +++ ILNK Sbjct: 280 IRQTDEIVERIGVERSREAIDKADLIMFIFDSSRPLEKDDYDILKLIENK--KVLYILNK 337 Query: 140 ID 141 ID Sbjct: 338 ID 339 >gi|309751333|gb|ADO81317.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2866] Length = 461 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ NA Sbjct: 226 VVIAGRPNAGKSSLLNALAGHEAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNAT 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 286 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 345 Query: 142 C 142 Sbjct: 346 L 346 >gi|311278558|ref|YP_003940789.1| ribosome-associated GTPase EngA [Enterobacter cloacae SCF1] gi|308747753|gb|ADO47505.1| ribosome-associated GTPase EngA [Enterobacter cloacae SCF1] Length = 492 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 9/173 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRAREKPTFLVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 P +QA + + + + ++A+ G G +L ++ L PW+ D Sbjct: 124 DP----DQAVSDFWSLGLGEIYPIAASHGRGVTSLLEHV-----LLPWMEDVD 167 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 207 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 266 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 267 KITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 326 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVL 179 + E + EQ + + +L FI+ + +SA G G ++ Sbjct: 327 GLSQE-VKEQVKETLDYRLGFIDFARVHFISALHGSGVGNLF 367 >gi|306831214|ref|ZP_07464375.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426780|gb|EFM29891.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 457 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD+V LV++S L N L E++K S+R+IL LNK Sbjct: 281 IRETDDVVEKIGVERSKKALEEADLVLLVLNSSEPL-TNQDRALLELSKDSNRIIL-LNK 338 Query: 140 IDCVKPERL 148 D PE++ Sbjct: 339 TDL--PEKI 345 >gi|251778655|ref|ZP_04821575.1| tRNA modification GTPase TrmE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082970|gb|EES48860.1| tRNA modification GTPase TrmE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 456 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 13/161 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V ++G N GKS+L+N + K +IVT TTR I+ ++ I DT G Sbjct: 223 RDGLNVVIIGKPNVGKSSLLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIPIKITDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D+ K+ + S I+ AD++ L++DS R+L+ +++ I ++ I++LNK Sbjct: 283 IRETEDTVEKIGVERSREKIEEADLIILILDSSRDLEEEDKEIINTIKDKNH--IVLLNK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D +R + ++ N++ +SA G+G +++ N Sbjct: 341 TDL---DRKIADIDLDNQI-------KISAKTGYGIEELKN 371 >gi|229159044|ref|ZP_04287100.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 4342] gi|228624463|gb|EEK81234.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 4342] Length = 458 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 6/137 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQAE 153 D + ER++E AE Sbjct: 336 TDLPQAIDMERVIELAE 352 >gi|284991408|ref|YP_003409962.1| ribosome-associated GTPase EngA [Geodermatophilus obscurus DSM 43160] gi|284064653|gb|ADB75591.1| ribosome-associated GTPase EngA [Geodermatophilus obscurus DSM 43160] Length = 447 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 8/169 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + + +DT G Sbjct: 10 VVAIVGRPNVGKSTLVNRFLGRRAAVVQDTPGVTRDRIAYEALWNGKRFTVVDTGGWDPR 69 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNKID 141 + R + +K AD++ VVDS ++ DL I +RS R +IL+ NK+D Sbjct: 70 ASGLGASITRQAEYAMKTADVIVFVVDS--QVGATDTDLAAARILRRSDRPVILVANKVD 127 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E AE+ + + + + VSA G D+L+ + +P AP Sbjct: 128 DERSES--NAAELWS--LGLGEPQPVSALHGRASGDLLDLVLEAVPEAP 172 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 8/173 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+NR + S+V TT V IV+ + F+DT G+ Sbjct: 184 VALVGRPNVGKSSLLNRLAKDERSVVDSVAGTTVDPVDSIVTLGGEEWRFVDTAGLRRKV 243 Query: 85 DSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + S T I+ A++ +++ + + ++ ++ + L++ NK D Sbjct: 244 NTASGMEYYASLRTEAAIQAAEVAVVLLAADEVVSEQDQRVITQVIEAGRALVIAFNKWD 303 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + +R + + EI L ++ +SA G G D + +L LA W Sbjct: 304 TLDEDRRHQLEREIERDLARVKWASRVNISALTGRGVDKLAQHLREA--LASW 354 >gi|258406257|ref|YP_003198999.1| tRNA modification GTPase TrmE [Desulfohalobium retbaense DSM 5692] gi|257798484|gb|ACV69421.1| tRNA modification GTPase TrmE [Desulfohalobium retbaense DSM 5692] Length = 461 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 8/160 (5%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V L G NAGKS+L+N +G + +IVT TTR + V+ + +DT G Sbjct: 222 RDGALVVLAGRVNAGKSSLMNAILGRERAIVTPIAGTTRDYLEEQVNLSGLPVRLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + D + + S ++ AD+VC+V+DS + L + LL+E ++ +++LNK Sbjct: 282 LRETDDLVERAGLSRSRELLEQADLVCVVLDSSQALTADDRALLQEAPNETT--LVVLNK 339 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 D + P ++A A L T A + G D ++ Sbjct: 340 QD-LPPHTETQEAVAAQGL----PTVPAVAVEADGVDALI 374 >gi|328704563|ref|XP_003242532.1| PREDICTED: GTPase Era, mitochondrial-like [Acyrthosiphon pisum] Length = 227 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 4/90 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A++G NAGKS+++N V + + KV TTRS VR + S ++Q+VFLDTPG+ + Sbjct: 61 IAIIGVPNAGKSSIINSIVQRNICPYSCKVHTTRSSVRAVRSVDDTQLVFLDTPGLVDST 120 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVD 110 AK + + S ++I+ ADI+ ++ D Sbjct: 121 EIAKYNLERTFANDSVNSIEEADIIGVIHD 150 >gi|295100402|emb|CBK97947.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii L2-6] Length = 447 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 4/175 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ G +++IV TR + + + +DT GI A Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWSGHEFLLVDTGGIEPKA 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M + I AD + +VVD L D+ + + +IL +NK D V Sbjct: 66 TEGILAHMREQAQIAIDTADCIIMVVDVRNGLTAADEDVAHMLRRSHKPIILAVNKCDNV 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 E +E E N + ++ +S+ GHG D+L+ +C+ L + V D+I Sbjct: 126 G-ETPMELYEFYN--LGFDEVMPISSVHGHGTGDLLDAVCAHLDFSETVVEEDRI 177 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+L NR +G IV ++ TTR + V + +F DT G+ Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N D + M+ + + ++ + + ++VD+ + + I+++NK D Sbjct: 239 NITDGLERYMVVRALAAVERSRVALILVDATVGFTEQDSKVAGYAHDQGKACIIVVNKWD 298 Query: 142 CVK 144 V+ Sbjct: 299 AVE 301 >gi|291166767|gb|EFE28813.1| ribosome-associated GTPase EngA [Filifactor alocis ATCC 35896] Length = 437 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N+ VG++V+IV TR + G +DT GI N Sbjct: 4 IVAIVGRPNVGKSTLFNKLVGSRVAIVEDTPGVTRDRIYGEAEWLTDYFTVIDTGGIDND 63 Query: 84 KDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D M R + + AD++ VV+ + ++ +++ + ++L +NK+D Sbjct: 64 SDDIIPAQMRRQAELAMDTADVILFVVNGRDGVTPQDREIAEQLRRTKKPIVLAVNKVDN 123 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + E+ + + +SA+ G G D+L+ + P Sbjct: 124 KNLPDYFYDFYELG-----VGEPLPISASVGLGIGDLLDVVAENFP 164 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 16/140 (11%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E+KD ++ VA+VG NAGKS+++NR +G + IV+ TTR + K+ Sbjct: 171 ENKDVIK-------VAIVGKPNAGKSSIINRILGEERVIVSPIAGTTRDAIDTYFHVKDQ 223 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLK 124 + +F+DT GI ++ K + S++ ++ AD+V +V+D++ E I L Sbjct: 224 EYLFIDTAGIRKKSKIDENIEKYSVIRSYAAVERADVVLIVIDANIGISEQDSKIAGLAH 283 Query: 125 EIAKRSSRLILILNKIDCVK 144 K + ++++NK D V+ Sbjct: 284 NAGKST---VIVVNKWDLVE 300 >gi|330817161|ref|YP_004360866.1| Small GTP-binding protein [Burkholderia gladioli BSR3] gi|327369554|gb|AEA60910.1| Small GTP-binding protein [Burkholderia gladioli BSR3] Length = 400 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 20/172 (11%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFL 75 ++ +R+ ++LVG TNAGKSTL N A+ T + R + + ++ QIV Sbjct: 190 RERNRTMSMSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYIGDEVGQIVVS 249 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKR 129 DT G ++ H+L+ R + HAD++ VVD+ +++ ++D+L EI Sbjct: 250 DTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNDVLHEIGAD 307 Query: 130 SSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 308 AIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|153002874|ref|YP_001368555.1| tRNA modification GTPase TrmE [Shewanella baltica OS185] gi|166234820|sp|A6WUK3|MNME_SHEB8 RecName: Full=tRNA modification GTPase mnmE gi|151367492|gb|ABS10492.1| tRNA modification GTPase TrmE [Shewanella baltica OS185] Length = 453 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ ++ I +W+ I AD V +VD V+ H + + Sbjct: 260 LDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFMVDGTTTAAVDPHTIWPDF 319 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + +I NK D + ++ + + + + +SA G G +++ +L Sbjct: 320 VDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYS-------VYRISAKTGLGVEELKQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|293380887|ref|ZP_06626923.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1] gi|290922560|gb|EFD99526.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1] Length = 461 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S ++ AD+V L++D+ + L L++ A + + I+ILNK Sbjct: 282 IHHTEDKVEKIGVERSKKALERADLVLLLIDASQALTAEDQALIE--ATKDKKRIVILNK 339 Query: 140 ID 141 D Sbjct: 340 SD 341 >gi|325475284|gb|EGC78469.1| GTP-binding protein EngA [Treponema denticola F0402] Length = 476 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 12/166 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 + +VG N GKSTL N G+ SI+++ TTR IV G S K + + DT GI Sbjct: 211 ITIVGKPNTGKSTLANYLTGSSASIISNVAGTTRDIVEGEFSYKNKKFLIQDTAGIRRKA 270 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ ++ + ++ +ADIV ++D L ++ + R +I +LNK Sbjct: 271 KVNEDIEYYSVV--RAIKSMDNADIVFHLIDVQEGLTEQDKKIIVQATNRGLGVIFVLNK 328 Query: 140 IDCV-KPERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLN 180 D + + ++ + E K++F + + +SA +G G ++LN Sbjct: 329 WDLMEQTKKAFKDEEERIKVMFGKMDYAPVLAISANEGTGIKELLN 374 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NRF+ + SI TR V ++ +DT G Sbjct: 32 LIAIVGRPNVGKSTLFNRFLRKRRSITDPTPGVTRDPVEAQAIVNGLPVMLVDTGGFKLT 91 Query: 84 K------DSYHKLMIRLSWSTIKHADIVCLVVDS 111 + D+ +L++ + ST+K AD + L++D+ Sbjct: 92 RSGDAFEDTIDELVMEKTISTLKKADRILLLLDA 125 >gi|304412701|ref|ZP_07394304.1| tRNA modification GTPase TrmE [Shewanella baltica OS183] gi|304348911|gb|EFM13326.1| tRNA modification GTPase TrmE [Shewanella baltica OS183] Length = 453 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ ++ I +W+ I AD V +VD V+ H + + Sbjct: 260 LDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFMVDGTTTADVDPHTIWPDF 319 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + +I NK D + ++ + + + + +SA G G +++ +L Sbjct: 320 VDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYS-------VYRISAKTGLGVEELKQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|171779779|ref|ZP_02920735.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281881|gb|EDT47315.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 457 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD+V LV++S L LL E++K S+R+IL LNK Sbjct: 281 IRETDDVVEKIGVERSKKALEEADLVLLVLNSSEPLTDQDRALL-ELSKDSNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE+ +E E+ + ++ I Sbjct: 339 TDL--PEK-IEADELPDDVIRI 357 >gi|15640782|ref|NP_230412.1| GTP-binding protein EngA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585667|ref|ZP_01675462.1| GTP-binding protein [Vibrio cholerae 2740-80] gi|121726039|ref|ZP_01679338.1| GTP-binding protein [Vibrio cholerae V52] gi|147675115|ref|YP_001216248.1| GTP-binding protein EngA [Vibrio cholerae O395] gi|153817276|ref|ZP_01969943.1| GTP-binding protein [Vibrio cholerae NCTC 8457] gi|153821375|ref|ZP_01974042.1| GTP-binding protein [Vibrio cholerae B33] gi|227080942|ref|YP_002809493.1| GTP-binding protein [Vibrio cholerae M66-2] gi|229505623|ref|ZP_04395133.1| GTP-binding protein EngA [Vibrio cholerae BX 330286] gi|229510705|ref|ZP_04400184.1| GTP-binding protein EngA [Vibrio cholerae B33] gi|229517827|ref|ZP_04407271.1| GTP-binding protein EngA [Vibrio cholerae RC9] gi|229608641|ref|YP_002879289.1| GTP-binding protein EngA [Vibrio cholerae MJ-1236] gi|254847900|ref|ZP_05237250.1| GTP-binding protein EngA [Vibrio cholerae MO10] gi|255744569|ref|ZP_05418520.1| GTP-binding protein EngA [Vibrio cholera CIRS 101] gi|262161296|ref|ZP_06030407.1| GTP-binding protein EngA [Vibrio cholerae INDRE 91/1] gi|262168789|ref|ZP_06036484.1| GTP-binding protein EngA [Vibrio cholerae RC27] gi|298499104|ref|ZP_07008911.1| ribosome-associated GTPase EngA [Vibrio cholerae MAK 757] gi|26006742|sp|Q9KTW7|DER_VIBCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|172047436|sp|A5F3E6|DER_VIBC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783177|sp|C3LT16|DER_VIBCM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|9655209|gb|AAF93928.1| GTP-binding protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550030|gb|EAX60046.1| GTP-binding protein [Vibrio cholerae 2740-80] gi|121631521|gb|EAX63891.1| GTP-binding protein [Vibrio cholerae V52] gi|126512192|gb|EAZ74786.1| GTP-binding protein [Vibrio cholerae NCTC 8457] gi|126521085|gb|EAZ78308.1| GTP-binding protein [Vibrio cholerae B33] gi|146316998|gb|ABQ21537.1| GTP-binding protein [Vibrio cholerae O395] gi|227008830|gb|ACP05042.1| GTP-binding protein [Vibrio cholerae M66-2] gi|227012587|gb|ACP08797.1| GTP-binding protein [Vibrio cholerae O395] gi|229344542|gb|EEO09516.1| GTP-binding protein EngA [Vibrio cholerae RC9] gi|229350670|gb|EEO15611.1| GTP-binding protein EngA [Vibrio cholerae B33] gi|229357846|gb|EEO22763.1| GTP-binding protein EngA [Vibrio cholerae BX 330286] gi|229371296|gb|ACQ61719.1| GTP-binding protein EngA [Vibrio cholerae MJ-1236] gi|254843605|gb|EET22019.1| GTP-binding protein EngA [Vibrio cholerae MO10] gi|255737600|gb|EET92994.1| GTP-binding protein EngA [Vibrio cholera CIRS 101] gi|262022907|gb|EEY41613.1| GTP-binding protein EngA [Vibrio cholerae RC27] gi|262029046|gb|EEY47699.1| GTP-binding protein EngA [Vibrio cholerae INDRE 91/1] gi|297543437|gb|EFH79487.1| ribosome-associated GTPase EngA [Vibrio cholerae MAK 757] Length = 494 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 7/179 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L V + + + + IL++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QISDL 201 + AE + +++ + ++A G G +++ + + P A + S Q+ DL Sbjct: 124 DAD--AASAEFWQ--LGMDQMYQIAAAHGRGVGALIDRVLN--PFAEQMESEQAQLEDL 176 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ K Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRK 267 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLSFDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|315186467|gb|EFU20227.1| ribosome-associated GTPase EngA [Spirochaeta thermophila DSM 6578] Length = 450 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G N GKSTL+N +G + ++V+ TTR ++ G + +DT GI Sbjct: 194 VAILGKPNTGKSTLLNTLLGEERALVSDAPGTTRDLLEGRFQYRGRWFRIVDTAGIRRRS 253 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D +R S I+ A +V L++D+ L + +R +IL+LNK D Sbjct: 254 RIEDDLEFYSVRRSLKVIEEAHVVFLLIDAQEGLTEQDKKIAAVAQRRGRGVILVLNKWD 313 Query: 142 CVKPERLLEQAEIANKLVFIE-----KTFMVSATKGHGCDDVLN 180 + P QA A F +SA +G G D +L+ Sbjct: 314 ALTPVPNQFQAMKARIRFFFPHMDYAPIVKISARRGEGIDKLLD 357 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 6/170 (3%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E + V SR V +VG N GKSTL NR +G + +I + TR V Sbjct: 5 TEGRRTVGVQSRLPRVVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGG 64 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +++ +DT GI + + + ++R + + AD++ LV+D + + L Sbjct: 65 GRVLLVDTGGITSERGGIFEPLVRERALREVDRADVLLLVLDVTELVPEDEELLELLRPY 124 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + RLIL++NK+D E E A L F F SA G G D++ Sbjct: 125 K-ERLILVVNKVDNEARE---EMAWNFFSLGFDTVCF-TSAEHGRGIDEL 169 >gi|172040767|ref|YP_001800481.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium urealyticum DSM 7109] gi|171852071|emb|CAQ05047.1| cytidylate kinase [Corynebacterium urealyticum DSM 7109] Length = 784 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 14/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + + + DT G Sbjct: 351 TVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGDWGGRRFWVQDTGGWDPD 410 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + + + AD + VVD+ KV I + + IA++ R +I++ NK Sbjct: 411 AKGIHAAIARQAETAMATADAIVFVVDT----KVGITETDEVIARKLQRSDVPVIVVANK 466 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E + A++A ++ + VSA G G DVL+ L P P Sbjct: 467 F-----ESDTQYADMAEFWALGLDNPYPVSALHGRGAADVLDKLLEVFPETP 513 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 11/135 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V + TT V IV +E F+DT GI Sbjct: 525 VALVGRPNVGKSSLLNKISGEQRSVVDNVAGTTVDPVDSIVELEERTWRFVDTAGIRKKV 584 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + Y L R + I +++V + D+ + +L+ I L++ N Sbjct: 585 KNAVGHEYYASLRTR---AAIDASEVVVFLADASEPIAEQDQRVLRMILDAGKALVVAFN 641 Query: 139 KIDCVKPER--LLEQ 151 K D V +R LLE+ Sbjct: 642 KWDLVDEDRRELLER 656 >gi|157373142|ref|YP_001471742.1| tRNA modification GTPase TrmE [Shewanella sediminis HAW-EB3] gi|189036210|sp|A8FP41|MNME_SHESH RecName: Full=tRNA modification GTPase mnmE gi|157315516|gb|ABV34614.1| tRNA modification GTPase TrmE [Shewanella sediminis HAW-EB3] Length = 453 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ ++ I +W+ I+ AD V +VD V+ H++ + Sbjct: 260 LDGMPLHIIDTAGLRDTADTVEQIGIERAWAEIETADQVLFMVDGTTTDAVDPHEIWPDF 319 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + ++ NK D + Q N F +SA G G +++ +L Sbjct: 320 IDRLPEKLGITVVRNKADITGEALTVTQDHGHN-------VFRISAKTGLGVEELQQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|227878343|ref|ZP_03996300.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus JV-V01] gi|256843835|ref|ZP_05549322.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN] gi|256849610|ref|ZP_05555042.1| thiophene and furan oxidation protein [Lactobacillus crispatus MV-1A-US] gi|262046278|ref|ZP_06019241.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US] gi|312984011|ref|ZP_07791359.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05] gi|227862079|gb|EEJ69641.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus JV-V01] gi|256613740|gb|EEU18942.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN] gi|256713726|gb|EEU28715.1| thiophene and furan oxidation protein [Lactobacillus crispatus MV-1A-US] gi|260573608|gb|EEX30165.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US] gi|310894513|gb|EFQ43587.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05] Length = 461 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S ++ AD+V L++D+ + L L++ A + + I+ILNK Sbjct: 282 IHHTEDKVEKIGVERSKKALERADLVLLLIDASQALTAEDQALIE--ATKDKKRIVILNK 339 Query: 140 ID 141 D Sbjct: 340 SD 341 >gi|42525602|ref|NP_970700.1| GTP-binding protein EngA [Treponema denticola ATCC 35405] gi|41815613|gb|AAS10581.1| GTP-binding protein EngA [Treponema denticola ATCC 35405] Length = 476 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 12/166 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 + +VG N GKSTL N G+ SI+++ TTR IV G S K + + DT GI Sbjct: 211 ITIVGKPNTGKSTLANYLTGSSASIISNVAGTTRDIVEGEFSYKNKKFLIQDTAGIRRKA 270 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ ++ + ++ +ADIV ++D L ++ + R +I +LNK Sbjct: 271 KVNEDIEYYSVV--RAIKSMDNADIVFHLIDVQEGLTEQDKKIIVQATNRGLGVIFVLNK 328 Query: 140 IDCV-KPERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLN 180 D + + ++ + E K++F + + +SA +G G ++LN Sbjct: 329 WDLMEQTKKAFKDEEERIKVMFGKMDYAPVLAISANEGTGIKELLN 374 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NRF+ + SI TR V ++ +DT G Sbjct: 32 LIAIVGRPNVGKSTLFNRFLRKRRSITDPTPGVTRDPVEAQAIINGLPVMLVDTGGFKLT 91 Query: 84 K------DSYHKLMIRLSWSTIKHADIVCLVVDS 111 + D+ +L++ + ST+K AD + L++D+ Sbjct: 92 RSGDAFEDTIDELVMEKTISTLKKADRILLLLDA 125 >gi|326794518|ref|YP_004312338.1| GTP-binding protein engA [Marinomonas mediterranea MMB-1] gi|326545282|gb|ADZ90502.1| GTP-binding protein engA [Marinomonas mediterranea MMB-1] Length = 445 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 6/181 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E +D +Q S+ + +VG N GKSTLVNR +G +V TTR V + Sbjct: 168 EARDQIQLESKGIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYQRHDK 227 Query: 71 QIVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +DT G+ + K++ K I + I+ A++V V+D+H +L ++ + Sbjct: 228 EYTLIDTAGVRRRKHVKEAVEKFSIVKTLQAIQDANVVICVIDAHEDLVEQDLHMIGYVL 287 Query: 128 KRSSRLILILNKIDCV-KPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCS 184 L++ +NK D + K ER + E+ +L F+ K +SA G D+ + + Sbjct: 288 DAGRGLVIAINKWDGMQKDEREHIKKEVERRLGFVPYAKVHYISALHGTAVGDLYDTIEE 347 Query: 185 T 185 T Sbjct: 348 T 348 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 7/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ ++V TR G E + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDALVADYPGLTRDRKYGDGKLGEHDFIVIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD V +VD L + + + S L++NK D + Sbjct: 64 EQGIDEKMASQSLQAIEEADAVLFLVDGRHGLNPADEMIANHLRRSSKPTYLVVNKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA-DQI 198 + L A+ + V + + ++A G G +++ + P A V A DQI Sbjct: 124 NEDIAL--ADFYS--VGLGSLYPIAAAHGKGVRSLID--TALAPFAEQVAEARDQI 173 >gi|154249913|ref|YP_001410738.1| GTP-binding protein EngA [Fervidobacterium nodosum Rt17-B1] gi|154153849|gb|ABS61081.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1] Length = 444 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V LVG +N GKSTL N+ VG + SIV + TTR V V + +DT GIF Sbjct: 13 TVILVGKSNVGKSTLFNKLVGKRKSIVADENGTTRDAVVDRVVWYDKTFQLVDTCGIFEG 72 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K D ++ ++ ++ AD+V VVD + L + + I K + +IL NK++ Sbjct: 73 KNDEIYEKSKEITIKSLSEADLVIFVVDGRKGLSSEDYTIADLIRKSGAEVILAANKVEN 132 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTL 186 K + Q + + + + F VSA + D+++ + + L Sbjct: 133 EK----IYQKNLPDFFSLGLGEPFPVSAEQSRNLDELIETIINKL 173 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 V LVG NAGKS+L N V + ++VT TTR I+ IV +F+DT G+ Sbjct: 192 VTLVGKPNAGKSSLFNMIVKEERALVTPIAGTTRDIIDEIVQINNKNYLFVDTAGLRKKS 251 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D ++ + +I+ +D+V LV+D+ + + K +++ NK D Sbjct: 252 RIEDFIERVSTMRTIDSIERSDVVVLVIDATEGITRQDQRIAGLAEKNGKATVIVFNKWD 311 Query: 142 CVK--PERLLEQAEIAN-KLVFIEKTFMV 167 VK +R+ E + N KL FI+ + +V Sbjct: 312 LVKHADKRVKEYLDQVNEKLYFIDYSPVV 340 >gi|77460818|ref|YP_350325.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf0-1] gi|123603396|sp|Q3K7C0|DER_PSEPF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77384821|gb|ABA76334.1| GTP-binding protein [Pseudomonas fluorescens Pf0-1] Length = 490 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NK+D + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDAKAGFTAADQMIAEHLRKRNKRSHVVANKVDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +AE A + + ++ G G +L S P Sbjct: 124 DPE--MARAEFAP--LGMGHAIPIAGAHGRGITQLLEAALSDFP 163 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 10/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + + + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ +NK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIAINK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 D + P ER + E+ +L F++ +SA G G ++ Sbjct: 316 WDGMTPSERDFVKVELQRRLFFVDFADIHFISALHGTGVGNL 357 >gi|144898965|emb|CAM75829.1| Small GTP-binding protein domain:GTP-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 470 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FNA 83 +VG N GKSTLVNR +G + + TR + ++ I +DT G+ N Sbjct: 204 IVGRPNVGKSTLVNRLLGQDRMLTGPEAGLTRDAISVDWQHRDRGIRLVDTAGLRKRANI 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D KL + I+ A++V LV+DS L + + + + L++ +NK D V Sbjct: 264 EDPVEKLSASNTLEAIRMAEVVVLVMDSAAILDKQDLTIARMVVEEGRSLVIAINKWDAV 323 Query: 144 -KP----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 KP +RL ++ E + +V T +SA G G D +++ + + Sbjct: 324 EKPQEALQRLADRLETSLPMVRGLPTVTISALTGRGVDKMMDAVLA 369 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G +++IV TR S + +DT G +A Sbjct: 4 TVAIVGRPNVGKSTLFNRLAGRRLAIVHDMPGVTRDRREAAASLLGMEFRVIDTAGFEDA 63 Query: 84 KDSYHKLMIRLSWST-IKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNK 139 D + +R T + AD+V +++D+ L + D L+ K+ + +IL+ NK Sbjct: 64 HDESIEARMRYQTDTAVAEADVVLMLIDARAGVTPLDAHFADYLR---KQKTPVILVANK 120 >gi|229846059|ref|ZP_04466171.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1] gi|229811063|gb|EEP46780.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1] Length = 452 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS V++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|295693883|ref|YP_003602493.1| tRNA modification GTPase mnme [Lactobacillus crispatus ST1] gi|295031989|emb|CBL51468.1| tRNA modification GTPase mnmE [Lactobacillus crispatus ST1] Length = 461 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S ++ AD+V L++D+ + L L++ A + + I+ILNK Sbjct: 282 IHHTEDKVEKIGVERSKKALERADLVLLLIDASQALTAEDQALIE--ATKDKKRIVILNK 339 Query: 140 ID 141 D Sbjct: 340 SD 341 >gi|78217514|gb|ABB36863.1| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 475 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 12/172 (6%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ R +A++G NAGKS+LVN G++ IV+ TTR V V + VF+D Sbjct: 203 EEEERPLKLAMLGRPNAGKSSLVNALSGSRRMIVSDVAGTTRDSVDIAVELGGRRYVFVD 262 Query: 77 TPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ +D + + S + AD+ +V+D+ L L+ + +R + Sbjct: 263 TAGVRRRAKIQDPVERYSVNSSLKSTTKADVTLVVLDAVEGLTQQDKRLIDLLDERKTPF 322 Query: 134 ILILNKIDCVKPE------RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +L++NKID V + RL + A K V I +SA G G D +L Sbjct: 323 MLVINKIDLVPRDGLTALKRLYDDALTFCKHVPI---MYISARSGRGVDKLL 371 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 11/128 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKSTL NR + + +I + TR + G V + + + +DT GI Sbjct: 25 IALIGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGYVKVGDRKFIIIDTGGITLDE 84 Query: 82 --------NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 + + ++R + I + +CLVVD L L + K + Sbjct: 85 HAAVAEGPDELRGFEAEILRQTEEAIADSVALCLVVDGREGLTPFDESLAAYVRKSGKPV 144 Query: 134 ILILNKID 141 +L +NK+D Sbjct: 145 LLAVNKVD 152 >gi|32034654|ref|ZP_00134801.1| COG1159: GTPase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 87 Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 44/64 (68%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI +E + Q +++D Sbjct: 7 QPKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVD 66 Query: 77 TPGI 80 TPG+ Sbjct: 67 TPGL 70 >gi|315185859|gb|EFU19624.1| tRNA modification GTPase TrmE [Spirochaeta thermophila DSM 6578] Length = 449 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G TNAGKS+L N F+ +IV+ TTR + G +S K ++ DT GI + Sbjct: 222 VVLAGRTNAGKSSLFNLFMREDRAIVSEVHGTTRDYLEGWISLKGVPVLLYDTAGIRDGG 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D IR + + HAD V +VD L L+ E+ LI + NK+D Sbjct: 282 DPVEAEGIRRTREILSHADAVIYLVDGTEGLSEGEEALIAELGAERP-LIPVWNKVDA 338 >gi|307305834|ref|ZP_07585580.1| tRNA modification GTPase TrmE [Shewanella baltica BA175] gi|306911327|gb|EFN41753.1| tRNA modification GTPase TrmE [Shewanella baltica BA175] Length = 458 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 205 DLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 264 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ ++ I +W+ I AD V +VD V+ H + + Sbjct: 265 LDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFMVDGTTTADVDPHTIWPDF 324 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + +I NK D + ++ + + + + +SA G G +++ +L Sbjct: 325 VDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYS-------VYRISAKTGLGVEELKQHLK 377 Query: 184 STL 186 S + Sbjct: 378 SLM 380 >gi|307718980|ref|YP_003874512.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192] gi|306532705|gb|ADN02239.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192] Length = 450 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G N GKSTL+N +G + ++V+ TTR ++ G + +DT GI Sbjct: 194 VAILGKPNTGKSTLLNTLLGEERALVSDAPGTTRDLLEGRFQYRGRWFRIVDTAGIRRRS 253 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D +R S I+ A +V L++D+ L + +R +IL+LNK D Sbjct: 254 RIEDDLEFYSVRRSLKVIEEAHVVFLLIDAQEGLTEQDKKIAAVAQRRGRGVILVLNKWD 313 Query: 142 CVKPERLLEQAEIANKLVFIE-----KTFMVSATKGHGCDDVLN 180 + P QA A F +SA +G G D +L+ Sbjct: 314 ALTPVPNQFQAMKARIRFFFPHMDYAPIVKISARRGEGIDKLLD 357 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKSTL NR +G + +I + TR V +++ +DT GI + + Sbjct: 20 VVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGGGRVLLVDTGGITSER 79 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + ++R + + AD++ LV+D + + L + RLIL++NK+D Sbjct: 80 GGIFEPLVRERALREVDRADVLLLVLDVTELVPEDEELLELLRPYK-ERLILVVNKVDNE 138 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 E E A L F F SA G G D++ Sbjct: 139 ARE---EMAWNFFSLGFDTVCF-TSAEHGRGIDEL 169 >gi|297568834|ref|YP_003690178.1| ribosome-associated GTPase EngA [Desulfurivibrio alkaliphilus AHT2] gi|296924749|gb|ADH85559.1| ribosome-associated GTPase EngA [Desulfurivibrio alkaliphilus AHT2] Length = 487 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VALVG N GKS+L NR G++ +IV TR ++ + + + +DT G+ + Sbjct: 52 VALVGRPNVGKSSLFNRLAGSRKAIVDPTPGVTRDRHYEKITWNDRRFILVDTGGLESDT 111 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++L+ + + AD+V ++D + + ++++ + + ++ ++NKID Sbjct: 112 TTEINRLIQEQTSQAVAEADVVLFLLDGREGILPDDQEVVEILRRSGKKVFYLINKIDA- 170 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 PE+ + +L +E+ + VSA G G D+L+ + + LP A Sbjct: 171 -PEQAAKLLPTFYEL-GVEELWPVSAEHGQGIGDLLDRVAAELPPA 214 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G N GKS+L+NR +G + +V++ TTR V +++ + + + +DT GI K Sbjct: 229 VAFIGRPNVGKSSLINRLLGEERMVVSNLPGTTRDSVDTLLTRADKKYLLIDTAGI-RRK 287 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + T++ D+ +V+D+ + +L +R +++LNK Sbjct: 288 GKVHEKVEKFSVLRALRTLERCDLALIVIDALEGVTEQDTKVLGYGLERGRACLVLLNKW 347 Query: 141 DCV-----KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 D + + +RLLE + A VSA GHG Sbjct: 348 DLIEHDRKQQQRLLEDVKRAVHFAGYAPVHRVSALTGHG 386 >gi|78188083|ref|YP_378421.1| tRNA modification GTPase TrmE [Chlorobium chlorochromatii CaD3] gi|123579063|sp|Q3ANQ3|MNME_CHLCH RecName: Full=tRNA modification GTPase mnmE gi|78170282|gb|ABB27378.1| tRNA modification GTPase trmE [Chlorobium chlorochromatii CaD3] Length = 473 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 4/133 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG+ NAGKSTL+N +G + SIV+H+ TTR + + + +DT G+ ++ Sbjct: 233 LVGSPNAGKSTLLNALLGEERSIVSHQPGTTRDYIEEPLLLGSTLFRLIDTAGLREGEEE 292 Query: 87 YHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDL--LKEIAKRSSRLILILNKIDCV 143 IR S+ I AD+V ++D SH + + D+ L E A + +L+L+ NK D + Sbjct: 293 VEHEGIRRSYRKIAEADVVLYLLDVSHPDYCNELSDITSLLEQASPNVQLLLVANKCDAI 352 Query: 144 -KPERLLEQAEIA 155 P L Q + A Sbjct: 353 TNPTERLAQLQAA 365 >gi|332882875|ref|ZP_08450484.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679195|gb|EGJ52183.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 464 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 21/182 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TNAGKSTL+N + + +IV+ TTR ++ V+ F+DT GI + Sbjct: 227 VAIVGETNAGKSTLLNTLLNEEKAIVSDIHGTTRDVIEDTVNLSGITFRFIDTAGIRDTH 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSRLILILN 138 D+ + I S+ ++ A+IV VVD+ R+L I L + +LI++LN Sbjct: 287 DTIENMGIARSFHKMEQAEIVLWVVDNTCAEAQIRQLSPRILPLCS-----NKQLIILLN 341 Query: 139 KIDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 K D V P +L E N + T +SA + G ++ N L T + P + S+D Sbjct: 342 KSDQVSAVPTKLSGLPE--NTV-----TLSISAKEKTGIQELQNLLVKTASV-PELTSSD 393 Query: 197 QI 198 I Sbjct: 394 LI 395 >gi|217975462|ref|YP_002360213.1| tRNA modification GTPase TrmE [Shewanella baltica OS223] gi|217500597|gb|ACK48790.1| tRNA modification GTPase TrmE [Shewanella baltica OS223] Length = 453 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ ++ I +W+ I AD V +VD V+ H + + Sbjct: 260 LDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFMVDGTTTAAVDPHAIWPDF 319 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + +I NK D + ++ + + + + +SA G G +++ +L Sbjct: 320 VDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYS-------VYRISAKTGLGVEELKQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|126663301|ref|ZP_01734299.1| GTP-binding protein EngA [Flavobacteria bacterium BAL38] gi|126624959|gb|EAZ95649.1| GTP-binding protein EngA [Flavobacteria bacterium BAL38] Length = 436 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 7/184 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + VA+VG N GKST NR + + +IV TR G + +DT G Sbjct: 2 NNIVAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYI 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + IR I AD + VVD + ++ K + K ++L++NK+ Sbjct: 62 KGSDDIFEAEIRKQVELAIDEADAIIFVVDVEEGITPMDDEVAKLLRKVKKPVLLVINKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+ + E N + + + F +S G G ++L+ L LP P V +++ Sbjct: 122 DNAMREK--DAVEFYN--LGLGEYFTISGMSGSGTGELLDKLVEVLPEMPEV--TEEVEP 175 Query: 201 LPMF 204 LP F Sbjct: 176 LPRF 179 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FNA 83 +VG NAGKS+ +N +G +VT TTR + + + +DT GI Sbjct: 181 VVGRPNAGKSSFINALIGEDRFVVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRKAKV 240 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K+ + S I+H+D+ LV+D+ R + + K +++++NK D V Sbjct: 241 KEDLEFYSVMRSVRAIEHSDVCLLVIDATRGFEGQDQSIFWLAEKNRKGVVILVNKWDLV 300 Query: 144 KPERL 148 + + + Sbjct: 301 EKDTM 305 >gi|119964121|ref|YP_947439.1| GTP-binding protein EngA [Arthrobacter aurescens TC1] gi|254783134|sp|A1R5C7|DER_ARTAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119950980|gb|ABM09891.1| putative GTP-binding protein Era [Arthrobacter aurescens TC1] Length = 491 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR +G + ++V TR V +DT G + Sbjct: 55 VLAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSARWNGRNFTLVDTGGWEHD 114 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + ++ AD V VVDS ++K + K +I++ NK+D Sbjct: 115 AKGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRKSKKPVIMVANKVDD- 173 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++A+ A L F E + VSA G G D+L+++ TLP Sbjct: 174 ----FAQEADSATLWGLGFGE-PYPVSALHGRGVADLLDHVMDTLP 214 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 15/153 (9%) Query: 21 RSGC---VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 RSG +AL+G N GKS+L+N+ G++ +V TTR V + + F+DT Sbjct: 224 RSGGPRRIALIGRPNVGKSSLLNKLAGSERVVVDPLAGTTRDPVDEFIELGDRTWRFVDT 283 Query: 78 PGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 GI D Y L + + + A ++ V + E V I L E + Sbjct: 284 AGIRRRQHMAQGADFYASLRTQAALEKAEVAVVLLAVDEVLSEQDVRILQLAIESGR--- 340 Query: 132 RLILILNKIDCVKPE--RLLEQAEIANKLVFIE 162 L+L NK D + E R LE+ EI L +E Sbjct: 341 ALVLAFNKWDLLDDERRRYLER-EIEQDLAHVE 372 >gi|329115888|ref|ZP_08244605.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020] gi|326906293|gb|EGE53207.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020] Length = 458 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD+V LV+++ +L H LL ++++ S+R+IL LNK Sbjct: 282 IRDTEDIVEKIGVERSKKALNEADLVLLVLNASEKLTEQDHILL-DLSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|312962901|ref|ZP_07777388.1| GTP-binding protein EngA [Pseudomonas fluorescens WH6] gi|311282928|gb|EFQ61522.1| GTP-binding protein EngA [Pseudomonas fluorescens WH6] Length = 489 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R LI NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYLIANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P EQA + + ++ G G +L P Sbjct: 124 DP----EQARAEFSPMGLGDAIPIAGAHGRGITQMLEVALRDFP 163 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 10/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + + + +DT G+ Sbjct: 197 IAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAGVRKRG 256 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ +NK Sbjct: 257 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIAINK 314 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 D + P ER + E+ +L F+E +SA G G ++ Sbjct: 315 WDGMTPSERDFVKIELQRRLFFVEFADIHFISALHGTGVGNL 356 >gi|88703668|ref|ZP_01101384.1| GTP-binding protein engA [Congregibacter litoralis KT71] gi|88702382|gb|EAQ99485.1| GTP-binding protein engA [Congregibacter litoralis KT71] Length = 495 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 11/176 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VA+VG N GKSTLVNR +G + +V + TTR V + +DT G+ Sbjct: 201 VAIVGRPNVGKSTLVNRILGEERVVVYDQPGTTRDSVYIKFVREGRPYTLIDTAGVRRRK 260 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N +++ K I + S I A++V L+VD L LL + L+L +NK D Sbjct: 261 NVREAIEKFSIIKTLSAISDANVVVLLVDGQEGLVDQDLHLLGHCLEAGRALVLAVNKWD 320 Query: 142 CVKP-ERLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVLN-----YLCSTLPLA 189 + P ++ + ++E+ +L F+E M +SA G G + Y + P+ Sbjct: 321 GLDPDQKEMIRSELDRRLRFVEFADMHFISALHGSGVGTLFGSIDAAYAAAMQPMG 376 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V + TR G + + +DT G+ Sbjct: 4 SIALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGRSDDRAFIVIDTGGVSGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV L+VD+ L L++ + ++S L++NKID Sbjct: 64 EEGIDAAMAEQSLLAIEEADIVLLLVDARDGLNPVDEQLVQYLRQQSRDFHLVVNKIDGR 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + + I ++A+ G G ++ + T+P Sbjct: 124 DPDVAVSDFHA----LGIASMHAIAASHGRGVRQMIESVLETIP 163 >gi|113460278|ref|YP_718336.1| tRNA modification GTPase TrmE [Haemophilus somnus 129PT] gi|122945114|sp|Q0I0Z2|MNME_HAES1 RecName: Full=tRNA modification GTPase mnmE gi|112822321|gb|ABI24410.1| tRNA modification GTPase trmE [Haemophilus somnus 129PT] Length = 452 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNTLAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ IR +W I+ AD + L++DS Sbjct: 278 DEVEKIGIRRAWDEIEQADRILLILDS 304 >gi|329955507|ref|ZP_08296415.1| tRNA modification GTPase TrmE [Bacteroides clarus YIT 12056] gi|328525910|gb|EGF52934.1| tRNA modification GTPase TrmE [Bacteroides clarus YIT 12056] Length = 461 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TNAGKSTL+N + + +IV+ TTR I+ V+ F+DT GI Sbjct: 224 VAIVGETNAGKSTLLNVLLNEEKAIVSDIHGTTRDIIEDTVNIGGITFRFIDTAGIRETN 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILNKIDC 142 D+ + I ++ + A+IV ++D+ + + I L ++ R R LIL+ NK D Sbjct: 284 DTIESIGIERTFQKLDQAEIVLWIIDA-TDAQTQITQLAGQLLPRCERKQLILVYNKADL 342 Query: 143 V 143 V Sbjct: 343 V 343 >gi|317051763|ref|YP_004112879.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5] gi|316946847|gb|ADU66323.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5] Length = 458 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 VA+VG N GKS+L+N ++ SIVT TTR IV +S I LDT GI Sbjct: 221 GAAVAIVGKPNVGKSSLLNALSRSERSIVTAIPGTTRDIVEQYISVHGLPIRLLDTAGIR 280 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++D+ ++ I + S I+ ADI+ ++D+ R H++ + + + +++LNK D Sbjct: 281 QSQDAVEQIGIERTRSAIQQADIILWLLDTSRPADEEDHEIARLVQGKPC--LVLLNKSD 338 >gi|144899662|emb|CAM76526.1| thiophene and furan oxidation protein ThdF [Magnetospirillum gryphiswaldense MSR-1] Length = 435 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 21/162 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++GA NAGKS+L+NR G +V+IV+ K TTR ++ + +V DT G+ A Sbjct: 216 IAILGAPNAGKSSLMNRIAGREVAIVSAKAGTTRDVIETHLDLHGWPVVLADTAGLREAA 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + I + + + AD+ LV D+ E ++ E + I++ NK D Sbjct: 276 EDIEAEGIARALARAESADLKMLVFDASLLPERDAQTQAMIDEAS------IVVFNKADM 329 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 P V + MVSA G G D +L L S Sbjct: 330 ANP-------------VDSDAGIMVSARTGLGLDALLARLES 358 >gi|160901486|ref|YP_001567068.1| tRNA modification GTPase TrmE [Delftia acidovorans SPH-1] gi|160367070|gb|ABX38683.1| tRNA modification GTPase TrmE [Delftia acidovorans SPH-1] Length = 473 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 17/174 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 233 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESS 292 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVN--IHDLLKEIAKRSSRLILIL 137 D ++ I +W I AD V + D H L + I + L + R +I + Sbjct: 293 DEVERIGIARAWDEIAAADAVLFLHDLTRMGEHDYLAADAAIAETLAQKLPRQVPVIDVW 352 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 NK D +P R+ E E + +SA G G D + L L +A W Sbjct: 353 NKTDRAEPARMQEHG-------GREGSVALSARTGDGLDALRRRL---LDVAGW 396 >gi|86606766|ref|YP_475529.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab] gi|123505609|sp|Q2JSU8|MNME_SYNJA RecName: Full=tRNA modification GTPase mnmE gi|86555308|gb|ABD00266.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab] Length = 459 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 10/159 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + G +IVT TTR +V + + + LDT G Sbjct: 223 RTGVKVAIVGRPNVGKSSLLNAWSGQDRAIVTDLPGTTRDVVESQLVVRGIPVQLLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D +L + S + AD++ LV+D+ + I R LIL++NK Sbjct: 283 IRATDDPVERLGVERSQRLAQTADVLVLVIDAQAGWTEADAAIYASIRHRP--LILVINK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D +++ EIA ++ + A +G G ++ Sbjct: 341 TDLAPADKIRLPPEIAYRVPAV-------AAQGQGIPEL 372 >gi|312143158|ref|YP_003994604.1| small GTP-binding protein [Halanaerobium sp. 'sapolanicus'] gi|311903809|gb|ADQ14250.1| small GTP-binding protein [Halanaerobium sp. 'sapolanicus'] Length = 409 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G NAGKS+L+N K+++V+ TT + + + ++ +DT GI ++ Sbjct: 12 IAVFGRRNAGKSSLINSLCNQKLALVSEVPGTTTDPVYKAMELLPLGPVMMIDTAGIDDS 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D ++ ++ S+ I+ D+ LV+D+ E LL K ++ ++ ++NKID Sbjct: 72 GD-LGEMRVKKSYEIIRKTDLAVLVIDNQVEFGKYEQKLLDNFNKTNTPVVAVINKIDLA 130 Query: 144 KPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++ E+ +KL + K ++SA G G +++ + + +P Sbjct: 131 -----FDKTEVVDKLQREYDLKPILLSAESGQGIEELRDKIAEKMP 171 >gi|161485612|ref|YP_386558.2| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 455 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 12/172 (6%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ R +A++G NAGKS+LVN G++ IV+ TTR V V + VF+D Sbjct: 183 EEEERPLKLAMLGRPNAGKSSLVNALSGSRRMIVSDVAGTTRDSVDIAVELGGRRYVFVD 242 Query: 77 TPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ +D + + S + AD+ +V+D+ L L+ + +R + Sbjct: 243 TAGVRRRAKIQDPVERYSVNSSLKSTTKADVTLVVLDAVEGLTQQDKRLIDLLDERKTPF 302 Query: 134 ILILNKIDCVKPE------RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +L++NKID V + RL + A K V I +SA G G D +L Sbjct: 303 MLVINKIDLVPRDGLTALKRLYDDALTFCKHVPI---MYISARSGRGVDKLL 351 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 11/128 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKSTL NR + + +I + TR + G V + + + +DT GI Sbjct: 5 IALIGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGYVKVGDRKFIIIDTGGITLDE 64 Query: 82 --------NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 + + ++R + I + +CLVVD L L + K + Sbjct: 65 HAAVAEGPDELRGFEAEILRQTEEAIADSVALCLVVDGREGLTPFDESLAAYVRKSGKPV 124 Query: 134 ILILNKID 141 +L +NK+D Sbjct: 125 LLAVNKVD 132 >gi|153953981|ref|YP_001394746.1| GTP-binding protein EngA [Clostridium kluyveri DSM 555] gi|219854595|ref|YP_002471717.1| hypothetical protein CKR_1252 [Clostridium kluyveri NBRC 12016] gi|189037142|sp|A5N7W7|DER_CLOK5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783148|sp|B9E1C8|DER_CLOK1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146346862|gb|EDK33398.1| Hypothetical protein CKL_1356 [Clostridium kluyveri DSM 555] gi|219568319|dbj|BAH06303.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 438 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 5/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G ++SIV TR V +DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRVYAQAEWLNYNFTIIDTGGIEPEN 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R + I+ A+++ +VD L ++ + + K ++L++NKID + Sbjct: 66 NDVIISKMRRQAQVAIETANVIIFIVDGREGLTAADKEVAQMLRKSKKPIVLVVNKIDNM 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K E + E N + I + +SA++G G D+L+ L Sbjct: 126 KQENYI--YEFYN--LGIGEPISISASQGLGLGDMLDKLVENF 164 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A +G N GKS+L+N+ +G + IV+ TTR + + E + + +DT G+ Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDAIDSYLETDEGKFLLIDTAGVRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ K + +++ ++ AD+ L++D+ ++ ++ + + +++++NK D Sbjct: 239 KVKEEIEKYSVIRTYTAVERADVCILMLDATHDISEQDEKIIGYAHELNKAIMVVINKWD 298 Query: 142 CV 143 V Sbjct: 299 LV 300 >gi|120556798|ref|YP_961149.1| tRNA modification GTPase TrmE [Marinobacter aquaeolei VT8] gi|166200483|sp|A1U7J3|MNME_MARAV RecName: Full=tRNA modification GTPase mnmE gi|120326647|gb|ABM20962.1| tRNA modification GTPase trmE [Marinobacter aquaeolei VT8] Length = 456 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ ++ Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSP 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI---AKRSSRLILILNKID 141 D ++ I +W I+ AD + L+VD+ K H++ + RS+ + +I NK+D Sbjct: 279 DEVEQIGIARAWEEIRQADRILLMVDATTTDKTEPHEIWPDFIDQLPRSAPVTVIRNKVD 338 >gi|291543431|emb|CBL16540.1| tRNA modification GTPase TrmE [Ruminococcus sp. 18P13] Length = 454 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKSTL+NR G + SIVT TTR +V V + + DT G+ + D Sbjct: 224 IVGRPNVGKSTLMNRLSGFERSIVTDIAGTTRDVVEESVRLGDLTLRLSDTAGLRDTPDR 283 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 +L + +++ ++ A+++ V DS L +L+ I KR R + I NK D Sbjct: 284 IEQLGVEIAYRRLEEAELILAVFDSTAPLLPQDRELISRIGKR--RAVAICNKSDAGSS- 340 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L E++ ++ +SA G G + + + L Sbjct: 341 --LTPDELSAHFAYV---IPISAKTGEGMEQLSSAL 371 >gi|37528711|ref|NP_932056.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp. laumondii TTO1] gi|46577344|sp|Q7MAX1|MNME_PHOLL RecName: Full=tRNA modification GTPase mnmE gi|36788150|emb|CAE17277.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp. laumondii TTO1] Length = 454 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 203 VRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + +DT G+ A D ++ I +W I+ AD V +VDS V ++ E Sbjct: 263 GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDSTTTNAVEPVEIWPEFMA 322 Query: 129 R---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 R S + ++ NK D E + AE++ +SA G G D + ++L T Sbjct: 323 RLPKSLPITVVRNKTDMTDEETSI--AEVSGY-----SLIRLSARSGEGIDLLRDHLKET 375 Query: 186 L 186 + Sbjct: 376 M 376 >gi|315924473|ref|ZP_07920695.1| ribosome-associated GTPase EngA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622352|gb|EFV02311.1| ribosome-associated GTPase EngA [Pseudoramibacter alactolyticus ATCC 23263] Length = 440 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 9/164 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--F 81 VA+VG N GKSTL N+ VG +++IV + TR + + + +DT GI Sbjct: 4 IVAVVGKPNVGKSTLFNKLVGERIAIVENTPGVTRDRIIADAEWQNHRFTLIDTGGIELK 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 H++ ++ + I+ AD++ L+ D + D+ + K+ ++I+++NK+D Sbjct: 64 TGNTIMHQMRVQAEIA-IETADLILLLCDGREGMTAADEDVADMLRKQHKKVIVVVNKLD 122 Query: 142 CVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 VK ERL E + + +SA +G G D+L+ + Sbjct: 123 SVKLEERLYEFYNLG-----LGDPLPISAEQGLGLGDLLDAIVD 161 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 8/174 (4%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 D S +A+VG NAGKSTLVN+ +G IV+ TTR + + + F Sbjct: 169 LADDEDGSLHIAVVGKPNAGKSTLVNQLIGENRMIVSDIPGTTRDAIDSKIERGGVEYTF 228 Query: 75 LDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +DT G+ D + I + + + AD+V ++V++ + + R Sbjct: 229 IDTAGLRRKSKIADEVERYSIIRAIAAVDRADVVLMMVNAQTGVTEQDSKIAGIAHNRFI 288 Query: 132 RLILILNKIDCVKPERLLEQ---AEIANKLVFIEKTFM--VSATKGHGCDDVLN 180 I+++NK D ++ + Q +I N L F+ M +SA G + + + Sbjct: 289 PTIIVVNKWDLIEKDTKTMQKMTGDIRNSLAFMPYAPMLFISAKTGKRAEKIYD 342 >gi|310642585|ref|YP_003947343.1| gtp-binding protein enga [Paenibacillus polymyxa SC2] gi|309247535|gb|ADO57102.1| GTP-binding protein engA [Paenibacillus polymyxa SC2] Length = 440 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKST+ NR +G ++SIV K TR + GI +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIIGDRLSIVEDKPGITRDRIYGISEWNGKSFSIIDTGGIEID 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D K + + I+ AD++ + D+ + ++ + + + +I+ +NK+D Sbjct: 65 GEDVILKSIRMQAELAIEEADVIVFMSDAKAGITQADEEVAQMLYRSGKPIIVAVNKVDN 124 Query: 143 VKPERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLNYLCSTLP 187 + L+ + F F VS + G G D+L+ + S LP Sbjct: 125 LSRADLIYE--------FYSYGFGDPIAVSGSHGTGIGDLLDAITSNLP 165 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 10/148 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL+G N GKS+LVN +G + IV+ TTR + + + V +DT G+ Sbjct: 179 VALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDTPFEKDGQKYVLIDTAGMRKRG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I+ AD+V +V++ E +I E K S + ++N Sbjct: 239 KVYETTEKYSVMRAMRAIERADVVLVVINGEEGIIEQDKHIAGYAYEAGKAS---LFVVN 295 Query: 139 KIDCV-KPERLLEQAEIANKLVFIEKTF 165 K D V K ++ + Q E + F+ T+ Sbjct: 296 KWDVVDKDDKTMHQFETKIRDHFLFMTY 323 >gi|304382194|ref|ZP_07364702.1| ribosome-associated GTPase EngA [Prevotella marshii DSM 16973] gi|304336659|gb|EFM02887.1| ribosome-associated GTPase EngA [Prevotella marshii DSM 16973] Length = 437 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 5/169 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR ++ +IV+ + TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTKSRRAIVSDEAGTTRDRQYGKCEWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N+ D + + + + AD+V +VD L D+ K + + +IL+ NK Sbjct: 62 VNSDDIFEDAIRKQVIVATEEADLVLFLVDITNGLTDWDEDVAKILRRAKLPVILVANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 D E++ + AE + + + +SA G G D+L+++ +P + Sbjct: 122 DS--NEQIYDAAEFYR--LGLGDPYCISAATGSGTGDLLDFVLQKMPAS 166 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S I+++D+ L++D+ R ++ ++ + I K S L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRAIENSDVCILMLDATRGIEAQDMNIFQLIQKNSKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 >gi|302393075|ref|YP_003828895.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501] gi|302205152|gb|ADL13830.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501] Length = 463 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 11/174 (6%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+L+N + +IVT TTR ++ +++ + +DT GI A++ Sbjct: 229 AIIGKPNVGKSSLLNALLRENRAIVTEVPGTTRDVIEEVINIDGIPLKIIDTAGIREAEN 288 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILNKIDCV 143 K+ I S +K AD+V LV+D+H I D ++I I+++NK D + Sbjct: 289 EVEKIGIEKSEKFLKRADLVLLVLDAH----CGITDEDRKIIGLAEGKDTIIVVNKTD-L 343 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +P+ +E E+ +L +E SAT+G G + L L S + + S DQ Sbjct: 344 EPKLAVE--ELKEEL-DMEAVVETSATEGIGIKE-LEELISDMVFGGQIKSTDQ 393 >gi|205422224|sp|A3DAS7|MNME_SHEB5 RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ ++ I +W+ I AD V +VD V+ H + + Sbjct: 260 LDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFMVDGTTTAAVDPHAIWPDF 319 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + +I NK D + ++ + + + + +SA G G +++ +L Sbjct: 320 VDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYS-------VYRISAKTGLGVEELKQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|184156315|ref|YP_001844655.1| GTPase [Lactobacillus fermentum IFO 3956] gi|227514112|ref|ZP_03944161.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum ATCC 14931] gi|183227659|dbj|BAG28175.1| GTPase [Lactobacillus fermentum IFO 3956] gi|227087483|gb|EEI22795.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum ATCC 14931] gi|299783731|gb|ADJ41729.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum CECT 5716] Length = 462 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 RDGLATAIIGRPNVGKSSLLNALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D+ K+ + S I+ AD++ L++DS R L L++ A++ ++I NK Sbjct: 281 IRHTDDTVEKIGVERSKQAIETADLILLLIDSSRPLTEEDRALIEATAQKPR--MVIFNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM 166 D L E E+ N I+ + + Sbjct: 339 TDLPAQVDLAELTELVNGDPVIQTSIL 365 >gi|320546578|ref|ZP_08040893.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812] gi|320448963|gb|EFW89691.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812] Length = 457 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD+V LV++S L LL E++K S+R+IL LNK Sbjct: 281 IRETDDVVEKIGVERSKKALEEADLVLLVLNSSEPLTDQDRALL-ELSKDSNRIIL-LNK 338 Query: 140 IDCVKPERL 148 D PE++ Sbjct: 339 TDL--PEKI 345 >gi|126739021|ref|ZP_01754715.1| GTP-binding protein EngA [Roseobacter sp. SK209-2-6] gi|126719638|gb|EBA16346.1| GTP-binding protein EngA [Roseobacter sp. SK209-2-6] Length = 489 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V + TR + G + + +DT G+ +A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLEDA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-SSRLILILNKID 141 D S M RL+ + ADI +VD+ + + ++ EI +R S+ +IL NK + Sbjct: 64 TDNSLEGRMRRLTERAVDMADICLFMVDARAGI-TPVDEVFAEILRRKSAHVILAANKAE 122 Query: 142 CVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E +LE + + + +S G G D+ + L +PLA Sbjct: 123 GNAAEAGVLEAYGLG-----LGEPIPLSGEHGEGMPDLYSVL---MPLA 163 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 33/233 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + TR + V + + DT G+ Sbjct: 206 VAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQVDWSGTPMRIFDTAGMRKKA 265 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ ++ DL + ++A+R R +++ +NK Sbjct: 266 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDA--DIPFEQQDLRIADLAEREGRAVVVAVNK 323 Query: 140 --IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 I+ K E+L + E +L+ + VSA G G + DV N Sbjct: 324 WDIEDNKQEKLRDLKEAFGRLLPQLRGAPLITVSAKTGKGLERLHDAIMRAYDVWNRRIP 383 Query: 185 TLPLAPWVYS--------ADQISDLPMFHFTAEITREKLFLHL--HKE-IPYS 226 T L W+ A Q + + + T TR F+ + H E IP S Sbjct: 384 TAALNRWLTGMLEQHPPPAPQGKRIKLRYMTQAKTRPPGFVVMCSHPEKIPAS 436 >gi|50122138|ref|YP_051305.1| GTP-binding protein EngA [Pectobacterium atrosepticum SCRI1043] gi|81827050|sp|Q6D280|DER_ERWCT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|49612664|emb|CAG76114.1| probable GTP-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 495 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + K + R +L+ NK D + Sbjct: 64 EDGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKMTVLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 P+ + A+ + + + + + ++A+ G G +L Sbjct: 124 DPD--MVTADFYS--LGMGEVYAIAASHGRGVTSLL 155 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + + +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYILIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 270 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVMNKWD 329 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E R + + +L FI+ + +SA G G ++ Y C+T Sbjct: 330 GLSQEVRDQVKDTLDLRLGFIDFARIHFISALHGSGVGNLFESVTEAYSCAT 381 >gi|251788752|ref|YP_003003473.1| GTP-binding protein EngA [Dickeya zeae Ech1591] gi|247537373|gb|ACT05994.1| small GTP-binding protein [Dickeya zeae Ech1591] Length = 497 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + ++ + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L H + + + R L+ NKID + Sbjct: 64 EDGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADHAIAQHLRTREKDTFLVANKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ++ + + + + ++A+ G G +L + LP A Sbjct: 124 D----IDTGTADFYSLGLGEVYPIAASHGRGVTALLEKVL--LPFA 163 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + V +DT G+ Sbjct: 212 LAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGRDYVLIDTAGVRKRG 271 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 272 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 331 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + E + +L FI+ + +SA G G ++ Y CST Sbjct: 332 GLSQEVKEQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCST 383 >gi|237809900|ref|YP_002894340.1| tRNA modification GTPase TrmE [Tolumonas auensis DSM 9187] gi|237502161|gb|ACQ94754.1| tRNA modification GTPase TrmE [Tolumonas auensis DSM 9187] Length = 453 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 54/105 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 VVIAGRPNAGKSSLLNALAGRESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTD 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 D+ K+ I +W+ I+ AD V +VD N HDL + R Sbjct: 278 DTVEKIGIERAWAEIEQADRVLFMVDGTTTDARNPHDLWPDFVDR 322 >gi|157144555|ref|YP_001451874.1| GTP-binding protein EngA [Citrobacter koseri ATCC BAA-895] gi|166224326|sp|A8AD75|DER_CITK8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157081760|gb|ABV11438.1| hypothetical protein CKO_00275 [Citrobacter koseri ATCC BAA-895] Length = 490 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYALGLGEIHPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KVTDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLTQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|145630099|ref|ZP_01785881.1| tRNA modification GTPase [Haemophilus influenzae R3021] gi|144984380|gb|EDJ91803.1| tRNA modification GTPase [Haemophilus influenzae R3021] Length = 452 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS V++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESVDLTKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|238022844|ref|ZP_04603270.1| hypothetical protein GCWU000324_02764 [Kingella oralis ATCC 51147] gi|237865652|gb|EEP66790.1| hypothetical protein GCWU000324_02764 [Kingella oralis ATCC 51147] Length = 390 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 3/129 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G ++IVTH TTR VR ++ I DT G+ Sbjct: 226 VVLVGAPNVGKSSLLNALAGDDIAIVTHIAGTTRDTVREHITLDGVPIHITDTAGLRETD 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K+ I S +++AD+ +++D + +L ++ +R I+I NK D Sbjct: 286 DLVEKIGIERSEKAVQNADVALILIDPAEGINAATQAILNKLPSSLTR-IVIHNKADLRN 344 Query: 145 --PERLLEQ 151 P R+ Q Sbjct: 345 ETPSRVDNQ 353 >gi|257068697|ref|YP_003154952.1| cytidylate kinase [Brachybacterium faecium DSM 4810] gi|256559515|gb|ACU85362.1| cytidylate kinase [Brachybacterium faecium DSM 4810] Length = 755 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V + TR V +DT G Sbjct: 323 VVAVVGRPNVGKSTLVNRILGRREAVVEDRPGVTRDRVFYEAEWTGKDFWLVDTGGW--- 379 Query: 84 KDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D + R++ + AD+V +VD++ + LLK + K + ++L+ NK+ Sbjct: 380 EDRVQGIAYRVAEQAEVAVSLADVVLFIVDANVGVTTTDEQLLKVLRKANVPIVLVANKV 439 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + E LE A + N + + + VSA G G D+L+ + + +P Sbjct: 440 DDQRGE--LEAAALWN--LGLGEPHAVSALHGRGSGDLLDAVVAAMP 482 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+NR G + +V TTR V +S F+DT GI Sbjct: 497 VALVGRPNVGKSSLLNRLAGEQRVVVDDIAGTTRDPVDEKISLGGKDWTFVDTAGIRRRV 556 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L R + + A++ +++++ L ++ + + L+L N Sbjct: 557 LQSQGADYYASLRTR---AALDRAEVAVVLLEASEPLSTQDLKIIDMVLESGRALVLAFN 613 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 614 KWDLIDEER 622 >gi|312867712|ref|ZP_07727918.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405] gi|311096775|gb|EFQ55013.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405] Length = 457 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD+V LV+++ L LL EI++ S+R+IL LNK Sbjct: 281 IRETEDILEQIGVERSKKALKEADLVLLVLNASEPLTDQDRQLL-EISQDSNRIIL-LNK 338 Query: 140 IDCVKPERL 148 +D PE++ Sbjct: 339 VDL--PEKI 345 >gi|293410925|ref|ZP_06654501.1| ribosome-associated GTPase EngA [Escherichia coli B354] gi|291471393|gb|EFF13877.1| ribosome-associated GTPase EngA [Escherichia coli B354] Length = 499 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 ENGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L ++ L PW+ Sbjct: 133 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHV-----LLPWM 172 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|260893088|ref|YP_003239185.1| ribosome-associated GTPase EngA [Ammonifex degensii KC4] gi|260865229|gb|ACX52335.1| ribosome-associated GTPase EngA [Ammonifex degensii KC4] Length = 447 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V +VG N GKSTL NR VG V+IV + TR + V + V +DT G+ + Sbjct: 5 VVVIVGRPNVGKSTLFNRLVGKGVAIVEEEPGVTRDRLYREVEWCGREFVLVDTGGVVES 64 Query: 84 KDSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S ++ IR ++ AD+V VVD + + + + +L++NK+D Sbjct: 65 PESPLEVAIRRQVEQALEEADLVLFVVDYKTGVTAEDQAIASMLRRTGKPTLLVVNKVDK 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P +L L + VSA +G D+L+ + LP Sbjct: 125 FDPPPVLSD---FYALGLSTEPIPVSAAQGLNVGDLLDAVIDRLP 166 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 12/173 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVN +G + IV+ TTR V + + + +DT G+ Sbjct: 181 AVAIVGRPNVGKSSLVNALLGEERVIVSDIPGTTRDAVDTFFTWEGQPYILIDTAGLRRR 240 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ + + ++ A + LV+D + + + I + +++ +NK Sbjct: 241 SRIKEEAERQSCLRARQALRRAHVAVLVLDGAEGVTMQDKRIAGLIEEAGRAVVIAVNKW 300 Query: 141 DCVK-----PERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYLCSTL 186 D V R LE + +L FI +V A +G G VL + L Sbjct: 301 DLVPSSRKDAPRYLEA--LRRELYFINYAPVVFTVAPEGFGVTQVLTEVERAL 351 >gi|188587902|ref|YP_001920548.1| GTP-binding protein EngA [Clostridium botulinum E3 str. Alaska E43] gi|238689667|sp|B2V3Z1|DER_CLOBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188498183|gb|ACD51319.1| ribosome-associated GTPase EngA [Clostridium botulinum E3 str. Alaska E43] Length = 438 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N+ G ++SIV TR V +DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K M R + I+ AD++ +VD L ++ + K ++L++NKID + Sbjct: 66 DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVLVVNKIDSL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +SA++ G D+L+ Sbjct: 126 KYEE--NSWEFYN--LGIGDPITISASQALGLGDMLD 158 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/131 (22%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKS+L+N+ +G + IV+ TTR + + ++ + + +DT G+ Sbjct: 179 IAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDSYLETEQGKFILIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++I+ AD+ L++D+ + ++ + + +++++NK D Sbjct: 239 KVKEEIERYSVIRTYASIEKADVCILMIDAQDGVTEQDEKIIGYAHELNKAIMVLVNKWD 298 Query: 142 CV-KPERLLEQ 151 V K ++ +E+ Sbjct: 299 LVEKDDKTMEK 309 >gi|193063795|ref|ZP_03044882.1| tRNA modification GTPase TrmE [Escherichia coli E22] gi|194428063|ref|ZP_03060607.1| tRNA modification GTPase TrmE [Escherichia coli B171] gi|260846509|ref|YP_003224287.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009] gi|293464030|ref|ZP_06664444.1| tRNA modification GTPase TrmE [Escherichia coli B088] gi|300815046|ref|ZP_07095271.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1] gi|192930510|gb|EDV83117.1| tRNA modification GTPase TrmE [Escherichia coli E22] gi|194413821|gb|EDX30099.1| tRNA modification GTPase TrmE [Escherichia coli B171] gi|257761656|dbj|BAI33153.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009] gi|291321662|gb|EFE61098.1| tRNA modification GTPase TrmE [Escherichia coli B088] gi|300531938|gb|EFK53000.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1] gi|323161042|gb|EFZ46961.1| tRNA modification GTPase TrmE [Escherichia coli E128010] gi|323182501|gb|EFZ67905.1| tRNA modification GTPase TrmE [Escherichia coli 1357] gi|324115941|gb|EGC09867.1| tRNA modification GTPase TrmE [Escherichia coli E1167] Length = 454 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|325499511|gb|EGC97370.1| tRNA modification GTPase TrmE [Escherichia fergusonii ECD227] Length = 454 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|288941004|ref|YP_003443244.1| ribosome-associated GTPase EngA [Allochromatium vinosum DSM 180] gi|288896376|gb|ADC62212.1| ribosome-associated GTPase EngA [Allochromatium vinosum DSM 180] Length = 467 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK---ESQIVFLDTPGI- 80 VA+VG NAGKSTL+NR +G + + TTR + I E+ + + +DT G+ Sbjct: 180 VAVVGRPNAGKSTLINRLLGEERQVTFDSPGTTRDSIF-IPFERPGHDQRYTLIDTAGLR 238 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D K + + I+ A+++ LV+D+H + L I + L++ +N Sbjct: 239 RRARVHDPIEKFSVIKTLQAIEEANVIILVIDAHEGIGEQDATLAGHIIESGRALVVAIN 298 Query: 139 KIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 K D + P+ R + + A KL F++ K VSA G G VL+ Sbjct: 299 KWDGLDPDARNRVRDQFARKLAFLDFAKLHRVSALYGSGVGHVLD 343 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 4/173 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L+G N GKSTL NR + ++V TR GI V +DT GI A Sbjct: 4 VITLIGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRQYGIGRIGPRPYVIVDTGGIGTA 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + LM R ++ AD + +VD+ D+ + + + + L++NK D + Sbjct: 64 AEGIEALMERQVQRAVEEADHLLFMVDTRDGCTPEDIDIAQRLRRLGKPITLVVNKSDTM 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 P A + + + SAT+G G +++++ LP + +AD Sbjct: 124 DP----TLAVTDFHRLGLGDPWAASATQGLGVRGLIDHVFEHLPESAEEDAAD 172 >gi|228994203|ref|ZP_04154103.1| tRNA modification GTPase mnmE [Bacillus pseudomycoides DSM 12442] gi|229000273|ref|ZP_04159842.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock3-17] gi|229007799|ref|ZP_04165384.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock1-4] gi|228753459|gb|EEM02912.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock1-4] gi|228759605|gb|EEM08582.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock3-17] gi|228765655|gb|EEM14309.1| tRNA modification GTPase mnmE [Bacillus pseudomycoides DSM 12442] Length = 458 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 8/177 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A R I+I+NK Sbjct: 278 IRETEDIVERIGVERSKEMMGQADLVLIVVNYSEALTNEDEDLFR--AVRGKDFIVIVNK 335 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D K + E+A K + S + G D+ L + L + SAD Sbjct: 336 TDLPKQIDMKRVTELAGK----NRMITTSLIEEKGVDE-LEKAIADLFFEGTIESAD 387 >gi|15804300|ref|NP_290339.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 EDL933] gi|12518545|gb|AAG58903.1|AE005601_9 GTP-binding protein in thiophene and furan oxidation [Escherichia coli O157:H7 str. EDL933] Length = 454 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSAKTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|285018364|ref|YP_003376075.1| GTP-binding protein enga [Xanthomonas albilineans GPE PC73] gi|283473582|emb|CBA16085.1| probable gtp-binding protein enga [Xanthomonas albilineans] Length = 465 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 VALVG N GKSTL N ++ ++V + TR G+ + E+ V +DT GI Sbjct: 5 VALVGRPNVGKSTLFNALTRSRDALVHDQPGVTRDRHYGVCRLQPETPFVIVDTGGISGE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 ++ + + AD+V VVD RE ++ D +L + K + IL++NKID Sbjct: 65 EEGLAGATASQARAAAGEADLVLFVVDG-REGASSLDDEILSWLRKLARPTILLINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +++ +AE A + + VSA G DD+L+++ + LP Sbjct: 124 TDEDQV--RAEFAR--YGLGEAIAVSAAHRQGIDDLLDHVLARLP 164 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + + +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASDVPGTTRDSIAVDLERDDRPYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + + I+ ++ L++D+ + +L I L++ +NK D Sbjct: 241 RVEEAVEKFSVFKTLQAIEQCEVAVLLLDASEGVTDQDASVLGAILDAGRALVVAVNKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + EQAE ++ KL F+ + +SA G G ++ + + A +S + Sbjct: 301 GLT-DYQREQAEALLSRKLGFVPWAEAVRISAKHGSGLRELFRAIHNAHASAVREFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|218702556|ref|YP_002410185.1| tRNA modification GTPase TrmE [Escherichia coli IAI39] gi|254811479|sp|B7NR09|MNME_ECO7I RecName: Full=tRNA modification GTPase mnmE gi|218372542|emb|CAR20417.1| GTPase [Escherichia coli IAI39] Length = 454 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWSEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|205355511|ref|ZP_03222282.1| GTP-binding protein ERA [Campylobacter jejuni subsp. jejuni CG8421] gi|205346745|gb|EDZ33377.1| GTP-binding protein ERA [Campylobacter jejuni subsp. jejuni CG8421] Length = 245 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 117/242 (48%), Gaps = 19/242 (7%) Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLK 124 +++QI+F+DTPG+ + + ++L+++ + ++ D++ V DS ++ + N L Sbjct: 3 EKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYE-NFLSL-- 59 Query: 125 EIAKRSSRLILILNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGC-DDVL 179 + I+ LNK+D LL E A+ + I + G D+++ Sbjct: 60 ---NPQAPHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDEIV 116 Query: 180 NYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD 239 YL + Y + +S + E ++ +L E+PYSS V+ ++ + Sbjct: 117 KYLDE----HEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINHTKDTPN 172 Query: 240 GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 IL +I + S K +++GK G +K I +A+ +I+++ ++ V L LFV V+K+W Sbjct: 173 LLILEANII-TDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNWQ 231 Query: 300 HD 301 D Sbjct: 232 KD 233 >gi|156932946|ref|YP_001436862.1| GTP-binding protein EngA [Cronobacter sakazakii ATCC BAA-894] gi|166198713|sp|A7MGU7|DER_ENTS8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|156531200|gb|ABU76026.1| hypothetical protein ESA_00749 [Cronobacter sakazakii ATCC BAA-894] Length = 492 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 9/173 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSRQKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 P +QA + + + ++A+ G G +L ++ L PW+ D Sbjct: 124 DP----DQAVSDFYSLGLGEIHPIAASHGRGVTSLLEHV-----LVPWMDDVD 167 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + + V +DT G+ Sbjct: 207 LAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREFVLIDTAGVRKRG 266 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 267 KITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 326 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E E E + +L FI+ + +SA G G ++ Sbjct: 327 GLSQEVKEEVKETLDYRLGFIDFARVHFISALHGSGVGNLF 367 >gi|170718319|ref|YP_001785331.1| tRNA modification GTPase TrmE [Haemophilus somnus 2336] gi|205829154|sp|B0URU2|MNME_HAES2 RecName: Full=tRNA modification GTPase mnmE gi|168826448|gb|ACA31819.1| tRNA modification GTPase TrmE [Haemophilus somnus 2336] Length = 452 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNTLAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ IR +W I+ AD + L++DS Sbjct: 278 DEVEKIGIRRAWDEIEQADRILLILDS 304 >gi|289579530|ref|YP_003478157.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9] gi|289529243|gb|ADD03595.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9] Length = 460 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 9/128 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ ++ K I +DT G Sbjct: 220 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILI 136 I + + K+ + S + AD++ V+D+ REL I D+L E +I + Sbjct: 280 IRDTDELVEKIGVERSKEVLAEADLILFVLDASRELSEEDYQIFDILTE-----KNIIFV 334 Query: 137 LNKIDCVK 144 LNKID K Sbjct: 335 LNKIDLPK 342 >gi|193069233|ref|ZP_03050190.1| tRNA modification GTPase TrmE [Escherichia coli E110019] gi|260857883|ref|YP_003231774.1| GTPase TrmE [Escherichia coli O26:H11 str. 11368] gi|192957557|gb|EDV88003.1| tRNA modification GTPase TrmE [Escherichia coli E110019] gi|257756532|dbj|BAI28034.1| GTPase TrmE [Escherichia coli O26:H11 str. 11368] gi|323155383|gb|EFZ41566.1| tRNA modification GTPase TrmE [Escherichia coli EPECa14] Length = 454 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|260870437|ref|YP_003236839.1| GTPase TrmE [Escherichia coli O111:H- str. 11128] gi|257766793|dbj|BAI38288.1| GTPase TrmE [Escherichia coli O111:H- str. 11128] gi|323177718|gb|EFZ63302.1| tRNA modification GTPase TrmE [Escherichia coli 1180] Length = 454 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|297545652|ref|YP_003677954.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843427|gb|ADH61943.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 462 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 9/128 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ ++ K I +DT G Sbjct: 222 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILI 136 I + + K+ + S + AD++ V+D+ REL I D+L E +I + Sbjct: 282 IRDTDELVEKIGVERSKEVLAEADLILFVLDASRELSEEDYQIFDILTE-----KNIIFV 336 Query: 137 LNKIDCVK 144 LNKID K Sbjct: 337 LNKIDLPK 344 >gi|300984421|ref|ZP_07176985.1| tRNA modification GTPase TrmE [Escherichia coli MS 45-1] gi|300408377|gb|EFJ91915.1| tRNA modification GTPase TrmE [Escherichia coli MS 45-1] Length = 479 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 226 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 285 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 286 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 345 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 346 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 398 Query: 184 STL 186 ++ Sbjct: 399 QSM 401 >gi|251778692|ref|ZP_04821612.1| ribosome-associated GTPase EngA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083007|gb|EES48897.1| ribosome-associated GTPase EngA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 438 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N+ G ++SIV TR V +DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K M R + I+ AD++ +VD L ++ + K ++L++NKID + Sbjct: 66 DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVLVVNKIDSL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +SA++ G D+L+ Sbjct: 126 KYEE--NSWEFYN--LGIGDPITISASQALGLGDMLD 158 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/131 (22%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKS+L+N+ +G + IV+ TTR + + ++ + + +DT G+ Sbjct: 179 IAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDSYLETEQGKFILIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++I+ AD+ L++D+ + ++ + + +++++NK D Sbjct: 239 KVKEEIERYSVIRTYASIEKADVCILMIDAQDGVTEQDEKIIGYAHELNKAIMVLVNKWD 298 Query: 142 CV-KPERLLEQ 151 V K ++ +E+ Sbjct: 299 LVEKDDKTMEK 309 >gi|126176560|ref|YP_001052709.1| tRNA modification GTPase TrmE [Shewanella baltica OS155] gi|125999765|gb|ABN63840.1| tRNA modification GTPase trmE [Shewanella baltica OS155] Length = 479 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 226 DLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 285 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ ++ I +W+ I AD V +VD V+ H + + Sbjct: 286 LDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFMVDGTTTAAVDPHAIWPDF 345 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + +I NK D + ++ + + + + +SA G G +++ +L Sbjct: 346 VDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYS-------VYRISAKTGLGVEELKQHLK 398 Query: 184 STL 186 S + Sbjct: 399 SLM 401 >gi|323975226|gb|EGB70330.1| tRNA modification GTPase TrmE [Escherichia coli TW10509] Length = 454 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|262192496|ref|ZP_06050647.1| GTP-binding protein EngA [Vibrio cholerae CT 5369-93] gi|262031655|gb|EEY50242.1| GTP-binding protein EngA [Vibrio cholerae CT 5369-93] Length = 494 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 7/179 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L V + + + + IL++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QISDL 201 + AE + +++ + ++A G G +++ + P A + S Q+ DL Sbjct: 124 DAD--AASAEFWQ--LGMDQMYQIAAAHGRGVGTLIDRALN--PFAEQMESEQAQLEDL 176 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ K Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRK 267 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLSLDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|288575053|ref|ZP_06393410.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570794|gb|EFC92351.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 444 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 V +VG N GKS+L NR +G + +IV TR + G V + + +DT G + Sbjct: 4 VTIVGRPNVGKSSLFNRLIGERRAIVDDVPGVTRDRLYGQVEWRGNSFYLVDTGGLLLRD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 +D + M ++ +D++ L VD L D+ I K + + +I+++NK+D Sbjct: 64 EDPIMEGMKGQIVQAMEESDVILLSVDGREGLTWMDEDIAMVIRKSAPKPVIVVVNKLDD 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +K + L+ + A L F + +SA G DD+L+ +C LP Sbjct: 124 MKFDELVYE---AYGLGF-QDVVGISAIHARGIDDLLDRVCELLP 164 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 VALVG N GKS+++NR +G S+V+ TTR + ++ + ++ +DT G+ Sbjct: 178 VALVGRPNVGKSSILNRLLGENRSLVSDVPGTTRDSIDSLMELDDGRKLRLIDTAGLRRK 237 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 KD + +I +D+ LVVD+ + L I +R ++L++NK Sbjct: 238 SRFKDDIEYYSFVRTMESIDRSDVSILVVDAVEGVTDQDKKLASSIVERGKGIVLVMNKW 297 Query: 141 DCVK--PERLLEQAE--IANKLVFIEKTFMV--SATKGHGC 175 D +K ER+ ++ + + LVF++ +V SA G G Sbjct: 298 DLLKGDGERIGDEKRDSVRDSLVFVDHAPLVFCSALTGRGV 338 >gi|24114984|ref|NP_709494.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 301] gi|30065014|ref|NP_839185.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T] gi|110807604|ref|YP_691124.1| tRNA modification GTPase TrmE [Shigella flexneri 5 str. 8401] gi|46577445|sp|Q83PL3|MNME_SHIFL RecName: Full=tRNA modification GTPase mnmE gi|123146522|sp|Q0SYP6|MNME_SHIF8 RecName: Full=tRNA modification GTPase mnmE gi|24054236|gb|AAN45201.1| GTP-binding protein in thiophene and furan oxidation [Shigella flexneri 2a str. 301] gi|30043275|gb|AAP18996.1| GTP-binding protein in thiophene and furan oxidation [Shigella flexneri 2a str. 2457T] gi|110617152|gb|ABF05819.1| GTP-binding protein in thiophene and furan oxidation [Shigella flexneri 5 str. 8401] gi|281603067|gb|ADA76051.1| tRNA modification GTPase trmE [Shigella flexneri 2002017] gi|313647714|gb|EFS12162.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T] gi|332750527|gb|EGJ80936.1| tRNA modification GTPase TrmE [Shigella flexneri K-671] gi|332750698|gb|EGJ81106.1| tRNA modification GTPase TrmE [Shigella flexneri 4343-70] gi|332751721|gb|EGJ82119.1| tRNA modification GTPase TrmE [Shigella flexneri 2747-71] gi|332764077|gb|EGJ94314.1| tRNA modification GTPase TrmE [Shigella flexneri 2930-71] gi|332996037|gb|EGK15664.1| tRNA modification GTPase TrmE [Shigella flexneri VA-6] gi|332997083|gb|EGK16699.1| tRNA modification GTPase TrmE [Shigella flexneri K-218] gi|332997872|gb|EGK17480.1| tRNA modification GTPase TrmE [Shigella flexneri K-272] gi|333013208|gb|EGK32581.1| tRNA modification GTPase TrmE [Shigella flexneri K-304] gi|333013667|gb|EGK33032.1| tRNA modification GTPase TrmE [Shigella flexneri K-227] Length = 454 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|26250447|ref|NP_756487.1| tRNA modification GTPase TrmE [Escherichia coli CFT073] gi|91213231|ref|YP_543217.1| tRNA modification GTPase TrmE [Escherichia coli UTI89] gi|110644049|ref|YP_671779.1| tRNA modification GTPase TrmE [Escherichia coli 536] gi|117625981|ref|YP_859304.1| tRNA modification GTPase TrmE [Escherichia coli APEC O1] gi|191170442|ref|ZP_03031995.1| tRNA modification GTPase TrmE [Escherichia coli F11] gi|218560782|ref|YP_002393695.1| tRNA modification GTPase TrmE [Escherichia coli S88] gi|227883929|ref|ZP_04001734.1| tRNA modification GTPase TrmE [Escherichia coli 83972] gi|237703508|ref|ZP_04533989.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA] gi|306815940|ref|ZP_07450078.1| tRNA modification GTPase TrmE [Escherichia coli NC101] gi|331660050|ref|ZP_08360988.1| tRNA modification GTPase TrmE [Escherichia coli TA206] gi|32171844|sp|Q8FBV3|MNME_ECOL6 RecName: Full=tRNA modification GTPase mnmE gi|122421834|sp|Q1R4M8|MNME_ECOUT RecName: Full=tRNA modification GTPase mnmE gi|123048671|sp|Q0TB01|MNME_ECOL5 RecName: Full=tRNA modification GTPase mnmE gi|166200477|sp|A1AHP0|MNME_ECOK1 RecName: Full=tRNA modification GTPase mnmE gi|254811476|sp|B7MGC8|MNME_ECO45 RecName: Full=tRNA modification GTPase mnmE gi|26110877|gb|AAN83061.1|AE016769_176 Probable tRNA modification GTPase trmE [Escherichia coli CFT073] gi|91074805|gb|ABE09686.1| probable tRNA modification GTPase TrmE [Escherichia coli UTI89] gi|110345641|gb|ABG71878.1| probable tRNA modification GTPase TrmE [Escherichia coli 536] gi|115515105|gb|ABJ03180.1| tRNA modification GTPase [Escherichia coli APEC O1] gi|190909250|gb|EDV68836.1| tRNA modification GTPase TrmE [Escherichia coli F11] gi|218367551|emb|CAR05336.1| GTPase [Escherichia coli S88] gi|226902772|gb|EEH89031.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA] gi|227839207|gb|EEJ49673.1| tRNA modification GTPase TrmE [Escherichia coli 83972] gi|294489502|gb|ADE88258.1| tRNA modification GTPase TrmE [Escherichia coli IHE3034] gi|305850336|gb|EFM50793.1| tRNA modification GTPase TrmE [Escherichia coli NC101] gi|307555847|gb|ADN48622.1| tRNA modification GTPase TrmE [Escherichia coli ABU 83972] gi|307628783|gb|ADN73087.1| tRNA modification GTPase TrmE [Escherichia coli UM146] gi|323949951|gb|EGB45835.1| tRNA modification GTPase TrmE [Escherichia coli H252] gi|323954998|gb|EGB50776.1| tRNA modification GTPase TrmE [Escherichia coli H263] gi|331053265|gb|EGI25298.1| tRNA modification GTPase TrmE [Escherichia coli TA206] Length = 454 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|15833895|ref|NP_312668.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. Sakai] gi|168748574|ref|ZP_02773596.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4113] gi|168753599|ref|ZP_02778606.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4401] gi|168759896|ref|ZP_02784903.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4501] gi|168766197|ref|ZP_02791204.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4486] gi|168772255|ref|ZP_02797262.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4196] gi|168779932|ref|ZP_02804939.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4076] gi|168786540|ref|ZP_02811547.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869] gi|168798745|ref|ZP_02823752.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508] gi|195936329|ref|ZP_03081711.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4024] gi|208808040|ref|ZP_03250377.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4206] gi|208814185|ref|ZP_03255514.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4045] gi|208820072|ref|ZP_03260392.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4042] gi|209395938|ref|YP_002273234.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4115] gi|217324903|ref|ZP_03440987.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. TW14588] gi|254795709|ref|YP_003080546.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. TW14359] gi|261225860|ref|ZP_05940141.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia coli O157:H7 str. FRIK2000] gi|261258905|ref|ZP_05951438.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia coli O157:H7 str. FRIK966] gi|291285125|ref|YP_003501943.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615] gi|21363001|sp|Q8XB41|MNME_ECO57 RecName: Full=tRNA modification GTPase mnmE gi|254811478|sp|B5YXB0|MNME_ECO5E RecName: Full=tRNA modification GTPase mnmE gi|13364116|dbj|BAB38064.1| GTP-binding protein in thiophene and furan oxidation [Escherichia coli O157:H7 str. Sakai] gi|187771576|gb|EDU35420.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4196] gi|188016998|gb|EDU55120.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4113] gi|189002302|gb|EDU71288.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4076] gi|189359120|gb|EDU77539.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4401] gi|189364418|gb|EDU82837.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4486] gi|189369584|gb|EDU88000.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4501] gi|189373460|gb|EDU91876.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869] gi|189378836|gb|EDU97252.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508] gi|208727841|gb|EDZ77442.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4206] gi|208735462|gb|EDZ84149.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4045] gi|208740195|gb|EDZ87877.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4042] gi|209157338|gb|ACI34771.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4115] gi|209754068|gb|ACI75341.1| hypothetical protein ECs4641 [Escherichia coli] gi|209754070|gb|ACI75342.1| hypothetical protein ECs4641 [Escherichia coli] gi|209754072|gb|ACI75343.1| hypothetical protein ECs4641 [Escherichia coli] gi|209754074|gb|ACI75344.1| hypothetical protein ECs4641 [Escherichia coli] gi|209754076|gb|ACI75345.1| hypothetical protein ECs4641 [Escherichia coli] gi|217321124|gb|EEC29548.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. TW14588] gi|254595109|gb|ACT74470.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia coli O157:H7 str. TW14359] gi|290764998|gb|ADD58959.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615] gi|320191194|gb|EFW65844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli O157:H7 str. EC1212] gi|320639432|gb|EFX09047.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. G5101] gi|320644875|gb|EFX13911.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str. 493-89] gi|320650139|gb|EFX18635.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str. H 2687] gi|320655487|gb|EFX23422.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661113|gb|EFX28549.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. USDA 5905] gi|320666239|gb|EFX33245.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. LSU-61] gi|326337245|gb|EGD61080.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli O157:H7 str. 1044] gi|326341616|gb|EGD65405.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli O157:H7 str. 1125] Length = 454 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSAKTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|170681108|ref|YP_001746036.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5] gi|170767097|ref|ZP_02901550.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627] gi|194431305|ref|ZP_03063598.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012] gi|218551237|ref|YP_002385029.1| tRNA modification GTPase TrmE [Escherichia fergusonii ATCC 35469] gi|218691995|ref|YP_002400207.1| tRNA modification GTPase TrmE [Escherichia coli ED1a] gi|300824308|ref|ZP_07104424.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7] gi|300903017|ref|ZP_07120959.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1] gi|301305947|ref|ZP_07212029.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1] gi|331649534|ref|ZP_08350620.1| tRNA modification GTPase TrmE [Escherichia coli M605] gi|331665357|ref|ZP_08366258.1| tRNA modification GTPase TrmE [Escherichia coli TA143] gi|331679805|ref|ZP_08380475.1| tRNA modification GTPase TrmE [Escherichia coli H591] gi|205829138|sp|B1LL33|MNME_ECOSM RecName: Full=tRNA modification GTPase mnmE gi|254811480|sp|B7N211|MNME_ECO81 RecName: Full=tRNA modification GTPase mnmE gi|254811485|sp|B7LK49|MNME_ESCF3 RecName: Full=tRNA modification GTPase mnmE gi|170124535|gb|EDS93466.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627] gi|170518826|gb|ACB17004.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5] gi|194420760|gb|EDX36836.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012] gi|218358779|emb|CAQ91437.1| GTPase [Escherichia fergusonii ATCC 35469] gi|218429559|emb|CAR10382.1| GTPase [Escherichia coli ED1a] gi|222035421|emb|CAP78166.1| tRNA modification GTPase trmE [Escherichia coli LF82] gi|281180761|dbj|BAI57091.1| GTP-binding protein [Escherichia coli SE15] gi|284923790|emb|CBG36888.1| probable tRNA modification GTPase [Escherichia coli 042] gi|300404923|gb|EFJ88461.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1] gi|300523195|gb|EFK44264.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7] gi|300838798|gb|EFK66558.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1] gi|312948274|gb|ADR29101.1| tRNA modification GTPase TrmE [Escherichia coli O83:H1 str. NRG 857C] gi|315254605|gb|EFU34573.1| tRNA modification GTPase TrmE [Escherichia coli MS 85-1] gi|320193747|gb|EFW68380.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli WV_060327] gi|323944179|gb|EGB40259.1| tRNA modification GTPase TrmE [Escherichia coli H120] gi|323965768|gb|EGB61219.1| tRNA modification GTPase TrmE [Escherichia coli M863] gi|324111604|gb|EGC05585.1| tRNA modification GTPase TrmE [Escherichia fergusonii B253] gi|327250849|gb|EGE62551.1| tRNA modification GTPase TrmE [Escherichia coli STEC_7v] gi|330908023|gb|EGH36542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli AA86] gi|331042032|gb|EGI14176.1| tRNA modification GTPase TrmE [Escherichia coli M605] gi|331057867|gb|EGI29853.1| tRNA modification GTPase TrmE [Escherichia coli TA143] gi|331072977|gb|EGI44302.1| tRNA modification GTPase TrmE [Escherichia coli H591] gi|332083996|gb|EGI89203.1| tRNA modification GTPase TrmE [Shigella dysenteriae 155-74] gi|332084896|gb|EGI90079.1| tRNA modification GTPase TrmE [Shigella boydii 5216-82] Length = 454 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|300956287|ref|ZP_07168590.1| tRNA modification GTPase TrmE [Escherichia coli MS 175-1] gi|300316885|gb|EFJ66669.1| tRNA modification GTPase TrmE [Escherichia coli MS 175-1] Length = 462 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 209 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 268 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 269 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 328 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 329 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 381 Query: 184 STL 186 ++ Sbjct: 382 QSM 384 >gi|300214038|gb|ADJ78454.1| tRNA modification GTPase mnmE [Lactobacillus salivarius CECT 5713] Length = 464 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR ++ V+ + + +DT G Sbjct: 224 REGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S I+ AD+V LV+++ EL +L++ A + I+ILNK Sbjct: 284 IRETEDKVERIGVERSRKAIEQADLVMLVLNASEELTDEDKELIQ--ATSGKKRIVILNK 341 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + +LV ++ S K G D Sbjct: 342 TDL--PRKL--NMDEVRELVPEDELITTSVLKKTGVD 374 >gi|218885988|ref|YP_002435309.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756942|gb|ACL07841.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 478 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 10/127 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+N +G + +IVT TTR + V + +DT G+ + Sbjct: 224 VVLAGHVNAGKSSLMNALLGRRRAIVTDMPGTTRDFIEEPVQLAGLPVRLVDTAGLRDTG 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-------SHRELKVNIHDLLKEI---AKRSSRLI 134 D + +R+S + AD+V LVVD + REL ++ D ++ + R++ Sbjct: 284 DIVEQEGVRISRDLVAQADLVLLVVDAAAGLGHAERELLRHVRDQHAQVGRPGRPGGRVL 343 Query: 135 LILNKID 141 ++LNK D Sbjct: 344 VVLNKTD 350 >gi|187935025|ref|YP_001885401.1| GTP-binding protein EngA [Clostridium botulinum B str. Eklund 17B] gi|238691598|sp|B2THQ9|DER_CLOBB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187723178|gb|ACD24399.1| ribosome-associated GTPase EngA [Clostridium botulinum B str. Eklund 17B] Length = 438 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N+ G ++SIV TR V +DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K M R + I+ AD++ +VD L ++ + K ++L++NKID + Sbjct: 66 DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVLVVNKIDSL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +SA++ G D+L+ Sbjct: 126 KYEE--NSWEFYN--LGIGDPITISASQALGLGDMLD 158 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKS+L+N+ +G + IV+ TTR + + ++ + + +DT G+ Sbjct: 179 IAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDSYLETEQGKFILIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++I+ AD+ L++D+ + ++ + + +I+++NK D Sbjct: 239 KVKEEIERYSVIRTYASIEKADVCILMIDAQDGVTEQDEKIIGYAHELNKAIIVLVNKWD 298 Query: 142 CV-KPERLLEQ 151 V K ++ +E+ Sbjct: 299 LVEKDDKTMEK 309 >gi|301047527|ref|ZP_07194602.1| tRNA modification GTPase TrmE [Escherichia coli MS 185-1] gi|300300576|gb|EFJ56961.1| tRNA modification GTPase TrmE [Escherichia coli MS 185-1] gi|315292850|gb|EFU52202.1| tRNA modification GTPase TrmE [Escherichia coli MS 153-1] Length = 477 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 224 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 283 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 284 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 343 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 344 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 396 Query: 184 STL 186 ++ Sbjct: 397 QSM 399 >gi|171464336|ref|YP_001798449.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193874|gb|ACB44835.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 454 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 9/122 (7%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L GA N GKS+L+NR VG +V+IVT TTR VR ++ + +DT G+ D Sbjct: 225 LAGAPNVGKSSLINRLVGEEVAIVTPIAGTTRDRVRESITIDGVPMHIMDTAGLRETADL 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHR-----ELKVNIHDLLKEIAKRSSRLILILNKID 141 I SW +I+ AD+V + D+ +LK I LKE+ + + ++ ++NK D Sbjct: 285 VEAKGIERSWDSIRLADLVIFLTDAQSGAQKDDLKTQI---LKELPSKCA-VLEVVNKAD 340 Query: 142 CV 143 + Sbjct: 341 LL 342 >gi|149926362|ref|ZP_01914623.1| GTP-binding protein EngA [Limnobacter sp. MED105] gi|149824725|gb|EDM83939.1| GTP-binding protein EngA [Limnobacter sp. MED105] Length = 441 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 5/168 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR + ++V ++ TR G+ + + +DT G+ Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVANQPGLTRDRHYGVGRIGPREYLVVDTGGLEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD + M + S I +D+V +VD + + + H + E+ K +IL++NK + Sbjct: 64 AKDGIYAEMAKQSRQAIVESDLVLFLVDGRQGVTPHDHVIAAELRKAKREVILVVNKTEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + A+ + + + +SA+ G G +++ C LP+ P Sbjct: 124 YT--HSMAAADFFE--LGLGEPETISASHGDGVRQLMDIACEKLPVLP 167 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 10/158 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G N GKST+VN +G + I TTR + + +DT G+ Sbjct: 178 VAIAGRPNVGKSTMVNTLLGEERVIAFDLPGTTRDSIYIDFERNDKPYTLIDTAGLRKRG 237 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK-- 139 +S K + + I+ A++V L++D+ +++ + I + L+L +NK Sbjct: 238 KVFESVEKFSVIKTLQAIEDANVVILMLDAQQDISDQDASIAGFIVEAGRSLVLAVNKWD 297 Query: 140 -IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHG 174 +D + ER+ +AE+ KL F+ K VSATK G Sbjct: 298 SLDDYRKERI--KAEVGRKLTFLNYAKFHYVSATKPFG 333 >gi|188535566|ref|YP_001909363.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99] gi|254811484|sp|B2VCE7|MNME_ERWT9 RecName: Full=tRNA modification GTPase mnmE gi|188030608|emb|CAO98503.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99] Length = 454 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+ AD V +VD N ++ + R S + ++ NK D Sbjct: 279 DEVERIGIERAWHEIEQADHVLFMVDGTTTEATNPAEIWPDFIARLPESLPVTVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 R +E+ V +SA G G +++ ++L S++ Sbjct: 339 ITGETRGVEE-------VNGHSLIRLSARTGEGIENLRDHLKSSM 376 >gi|300940893|ref|ZP_07155419.1| tRNA modification GTPase TrmE [Escherichia coli MS 21-1] gi|300454323|gb|EFK17816.1| tRNA modification GTPase TrmE [Escherichia coli MS 21-1] Length = 478 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 225 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 284 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 285 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 344 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 345 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 397 Query: 184 STL 186 ++ Sbjct: 398 QSM 400 >gi|294781805|ref|ZP_06747138.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA] gi|294481915|gb|EFG29683.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA] Length = 455 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 15/156 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININSIPLLLVDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D+ RE+ I++++ + ++I ILNKID Sbjct: 283 IVENIGVEKSKELINSADLILYVIDTSREIDEEDFRIYEII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 K L +K I+K +SA G D++ Sbjct: 338 KKEIDL-------SKFSKIDKWIEISALSKIGIDNL 366 >gi|254788525|ref|YP_003075954.1| tRNA modification GTPase TrmE [Teredinibacter turnerae T7901] gi|237685930|gb|ACR13194.1| tRNA modification GTPase TrmE [Teredinibacter turnerae T7901] Length = 449 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 11/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N ++IVT TTR ++R + + +DT G+ A Sbjct: 215 VVIAGRPNAGKSSLLNALAQRDIAIVTDIEGTTRDVLREQIHIDGMPLHIVDTAGLRAAT 274 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL---ILILNKID 141 D ++ I +W I AD + L+VDS R ++ D ++++K L +I NKID Sbjct: 275 DKVEQIGIERAWQEIDQADRILLMVDSTRLPDLSREDYWQQLSKHQPTLEKVTVIYNKID 334 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + + K +SA G G D ++ +L S + Sbjct: 335 --------DSGFTLPDTPAVYKEIALSAKTGAGIDALIAHLKSVM 371 >gi|205422290|sp|A9MJT6|MNME_SALAR RecName: Full=tRNA modification GTPase mnmE Length = 454 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHVIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPGDIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + + ++ NK D +L +E+ + LV +SA G G D + N+L Sbjct: 321 IARLPKNLPITVVRNKADITG--EMLGISEVNGHSLV------RLSARTGEGVDVLRNHL 372 Query: 183 CSTL 186 ++ Sbjct: 373 KQSM 376 >gi|254496744|ref|ZP_05109603.1| tRNA modification GTPase TrmE [Legionella drancourtii LLAP12] gi|254354039|gb|EET12715.1| tRNA modification GTPase TrmE [Legionella drancourtii LLAP12] Length = 411 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 24/172 (13%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + + G NAGKSTL+N G ++IVT TTR ++R + + + +DT G Sbjct: 178 REGLSLVIAGRPNAGKSTLINNLAGRDIAIVTEIAGTTRDVMREHILLDDIPLHIIDTAG 237 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSRLILI 136 + + D K I+ +W +K AD V LVVD + + H L KEI +I + Sbjct: 238 LRESDDVVEKEGIKRAWQELKKADCVLLVVDIND--SEHHHLLTKEIRAALPTDVPIITV 295 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD-------DVLNY 181 NKID V + A++ V++ SA G G + DV+ Y Sbjct: 296 FNKIDTVA-----QAAQVQEHAVYL------SAKSGDGINGLKQVIKDVVGY 336 >gi|56461736|ref|YP_157017.1| tRNA modification GTPase TrmE [Idiomarina loihiensis L2TR] gi|81821749|sp|Q5QZJ5|MNME_IDILO RecName: Full=tRNA modification GTPase mnmE gi|56180746|gb|AAV83468.1| ThdF [Idiomarina loihiensis L2TR] Length = 458 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 38/207 (18%) Query: 6 ITFFNEHKDFVQDNSRSGCVA--------------------------LVGATNAGKSTLV 39 I F +E DF+ D SG +A + G NAGKS+L+ Sbjct: 178 IDFPDEEIDFLSDGKVSGDLAEIIDQLFHIEQEAKQGTLMREGMRIVIAGRPNAGKSSLL 237 Query: 40 NRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 N G + +IVT TTR ++R + + +DT G+ + D K+ I +W I Sbjct: 238 NALAGRESAIVTEIAGTTRDVLREHIQIDSMPLHIIDTAGLRESPDHVEKIGIERAWDEI 297 Query: 100 KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LILILNKIDCV-KPERLLEQAEIA 155 + AD V +VDS ++ D+ E + +I NK+D +P + E I Sbjct: 298 RQADRVLFMVDSQETSAIHPDDIWPEFFAQLPEDMPYTVIRNKVDLSEEPTGIDEHNNI- 356 Query: 156 NKLVFIEKTFMVSATKGHGCDDVLNYL 182 +SA GHG + + +L Sbjct: 357 -------PVIHLSAKTGHGIELLREHL 376 >gi|322391875|ref|ZP_08065340.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris ATCC 700780] gi|321145355|gb|EFX40751.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris ATCC 700780] Length = 457 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNSLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E AE+ + ++ I Sbjct: 339 TDL--PEA-IETAELPDDVIRI 357 >gi|119773150|ref|YP_925890.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B] gi|166234819|sp|A1S1G4|MNME_SHEAM RecName: Full=tRNA modification GTPase mnmE gi|119765650|gb|ABL98220.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B] Length = 453 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DEVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTDIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D ++ I +WS I AD V +VD V+ H++ + Sbjct: 260 LDGMPLHIIDTAGLRDTTDEVERIGIERAWSEIASADRVLFMVDGTDTAAVDPHEIWPDF 319 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D LE E V + +SA G G D + +L Sbjct: 320 IDRLPKAMGVTVVRNKADLTGEP--LEATEEQGYSV-----YRISAKTGLGVDALKQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|114565212|ref|YP_752726.1| tRNA modification GTPase TrmE [Shewanella frigidimarina NCIMB 400] gi|122298225|sp|Q07VS7|MNME_SHEFN RecName: Full=tRNA modification GTPase mnmE gi|114336505|gb|ABI73887.1| tRNA modification GTPase trmE [Shewanella frigidimarina NCIMB 400] Length = 453 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ ++ I +W+ I AD V +VD VN H++ + Sbjct: 260 LDGMPLHIIDTAGLRDTLDTVEQIGIERAWAEIASADRVLFMVDGTTTDAVNPHEIWPDF 319 Query: 127 AKR-SSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R ++L ++ NK D L++ E V + +SA G G D++ +L Sbjct: 320 IDRLPAKLGVTVVRNKADLTG--ETLDKTEEQGSCV-----YRISAKTGLGIDELKQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|16131574|ref|NP_418162.1| GTPase [Escherichia coli str. K-12 substr. MG1655] gi|82546029|ref|YP_409976.1| tRNA modification GTPase TrmE [Shigella boydii Sb227] gi|89110306|ref|AP_004086.1| GTPase [Escherichia coli str. K-12 substr. W3110] gi|170022257|ref|YP_001727211.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739] gi|170083208|ref|YP_001732528.1| GTPase [Escherichia coli str. K-12 substr. DH10B] gi|187732019|ref|YP_001882460.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94] gi|188493740|ref|ZP_03001010.1| tRNA modification GTPase TrmE [Escherichia coli 53638] gi|209921183|ref|YP_002295267.1| tRNA modification GTPase TrmE [Escherichia coli SE11] gi|218556273|ref|YP_002389187.1| tRNA modification GTPase TrmE [Escherichia coli IAI1] gi|238902797|ref|YP_002928593.1| GTPase [Escherichia coli BW2952] gi|254038925|ref|ZP_04872977.1| tRNA modification GTPase TrmE [Escherichia sp. 1_1_43] gi|256021275|ref|ZP_05435140.1| tRNA modification GTPase TrmE [Shigella sp. D9] gi|256025562|ref|ZP_05439427.1| tRNA modification GTPase TrmE [Escherichia sp. 4_1_40B] gi|293413161|ref|ZP_06655827.1| tRNA modification GTPase TrmE [Escherichia coli B354] gi|300917463|ref|ZP_07134124.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1] gi|301020896|ref|ZP_07184953.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1] gi|301644379|ref|ZP_07244380.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1] gi|307140407|ref|ZP_07499763.1| tRNA modification GTPase TrmE [Escherichia coli H736] gi|331644431|ref|ZP_08345560.1| tRNA modification GTPase TrmE [Escherichia coli H736] gi|331675198|ref|ZP_08375951.1| tRNA modification GTPase TrmE [Escherichia coli TA280] gi|331685431|ref|ZP_08386017.1| tRNA modification GTPase TrmE [Escherichia coli H299] gi|332282504|ref|ZP_08394917.1| tRNA modification GTPase TrmE [Shigella sp. D9] gi|2851487|sp|P25522|MNME_ECOLI RecName: Full=tRNA modification GTPase mnmE gi|123558283|sp|Q31UW0|MNME_SHIBS RecName: Full=tRNA modification GTPase mnmE gi|189036202|sp|B1IX32|MNME_ECOLC RecName: Full=tRNA modification GTPase mnmE gi|205829137|sp|B1X9T5|MNME_ECODH RecName: Full=tRNA modification GTPase mnmE gi|254811481|sp|B7M559|MNME_ECO8A RecName: Full=tRNA modification GTPase mnmE gi|254811483|sp|B6I3T9|MNME_ECOSE RecName: Full=tRNA modification GTPase mnmE gi|254811497|sp|B2TUS2|MNME_SHIB3 RecName: Full=tRNA modification GTPase mnmE gi|259495841|sp|C4ZYY4|MNME_ECOBW RecName: Full=tRNA modification GTPase mnmE gi|2367268|gb|AAC76729.1| GTPase [Escherichia coli str. K-12 substr. MG1655] gi|81247440|gb|ABB68148.1| ThdF [Shigella boydii Sb227] gi|85676337|dbj|BAE77587.1| GTPase [Escherichia coli str. K12 substr. W3110] gi|169757185|gb|ACA79884.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739] gi|169891043|gb|ACB04750.1| GTPase [Escherichia coli str. K-12 substr. DH10B] gi|187429011|gb|ACD08285.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94] gi|188488939|gb|EDU64042.1| tRNA modification GTPase TrmE [Escherichia coli 53638] gi|209914442|dbj|BAG79516.1| GTP-binding protein [Escherichia coli SE11] gi|218363042|emb|CAR00681.1| GTPase [Escherichia coli IAI1] gi|226838890|gb|EEH70917.1| tRNA modification GTPase TrmE [Escherichia sp. 1_1_43] gi|238861389|gb|ACR63387.1| GTPase [Escherichia coli BW2952] gi|260451436|gb|ACX41858.1| tRNA modification GTPase TrmE [Escherichia coli DH1] gi|291468294|gb|EFF10789.1| tRNA modification GTPase TrmE [Escherichia coli B354] gi|300398391|gb|EFJ81929.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1] gi|300415307|gb|EFJ98617.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1] gi|301077320|gb|EFK92126.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1] gi|309704154|emb|CBJ03501.1| probable tRNA modification GTPase [Escherichia coli ETEC H10407] gi|315138291|dbj|BAJ45450.1| tRNA modification GTPase TrmE [Escherichia coli DH1] gi|315618588|gb|EFU99174.1| tRNA modification GTPase TrmE [Escherichia coli 3431] gi|320174820|gb|EFW49943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella dysenteriae CDC 74-1112] gi|320185529|gb|EFW60295.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella flexneri CDC 796-83] gi|323934942|gb|EGB31320.1| tRNA modification GTPase TrmE [Escherichia coli E1520] gi|331036725|gb|EGI08951.1| tRNA modification GTPase TrmE [Escherichia coli H736] gi|331067643|gb|EGI39045.1| tRNA modification GTPase TrmE [Escherichia coli TA280] gi|331077802|gb|EGI49014.1| tRNA modification GTPase TrmE [Escherichia coli H299] gi|332089435|gb|EGI94539.1| tRNA modification GTPase TrmE [Shigella boydii 3594-74] gi|332104856|gb|EGJ08202.1| tRNA modification GTPase TrmE [Shigella sp. D9] gi|332345697|gb|AEE59031.1| tRNA modification GTPase TrmE [Escherichia coli UMNK88] Length = 454 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|326791286|ref|YP_004309107.1| GTP-binding proten HflX [Clostridium lentocellum DSM 5427] gi|326542050|gb|ADZ83909.1| GTP-binding proten HflX [Clostridium lentocellum DSM 5427] Length = 418 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 33/222 (14%) Query: 4 GEITFFNEHKDFVQ---DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 E+ +H+ ++ D + + VA+VG TNAGKSTL+N+ G+ V + T Sbjct: 179 AELAEVEKHRQLIRSRRDKNNTPVVAIVGYTNAGKSTLLNQLSGSDVYVQNQLFATLDPT 238 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI---KHADIVCLVVD------- 110 RGI S+I+ DT G F K +H +++ +ST+ K+ADI+ V+D Sbjct: 239 TRGITLPSGSEILLTDTVG-FIRKLPHH--LVKAFYSTLEEAKYADIILHVMDVSSPHLE 295 Query: 111 SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 +H+++ +++ L + ++ + NKID E K +SA Sbjct: 296 THQQV---VYETLSRLQISDIPIVAVYNKIDT--------HVEDYPKDEHATYETYISAK 344 Query: 171 KGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITR 212 +G GC+ +L+ L L YS Q D+ + + +I R Sbjct: 345 EGIGCEHLLSVLEEIL------YSNMQAFDIDVPYTNQDIVR 380 >gi|218707353|ref|YP_002414872.1| tRNA modification GTPase TrmE [Escherichia coli UMN026] gi|293407346|ref|ZP_06651268.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412] gi|298383087|ref|ZP_06992682.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302] gi|254811482|sp|B7NF24|MNME_ECOLU RecName: Full=tRNA modification GTPase mnmE gi|218434450|emb|CAR15378.1| GTPase [Escherichia coli UMN026] gi|291425637|gb|EFE98673.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412] gi|298276923|gb|EFI18441.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302] Length = 454 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|300896036|ref|ZP_07114596.1| tRNA modification GTPase TrmE [Escherichia coli MS 198-1] gi|300360060|gb|EFJ75930.1| tRNA modification GTPase TrmE [Escherichia coli MS 198-1] Length = 462 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 209 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 268 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 269 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 328 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 329 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 381 Query: 184 STL 186 ++ Sbjct: 382 QSM 384 >gi|291521111|emb|CBK79404.1| tRNA modification GTPase trmE [Coprococcus catus GD/7] Length = 458 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N +G +IVT TTR + VS + +DT GI +D Sbjct: 226 ILGKPNAGKSSLMNVLLGENRAIVTEIAGTTRDTLEEHVSIHGIPLNIIDTAGIRQTEDV 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ +R + + AD++ VVDS E+ N D+++ I +S ++I+++NK D Sbjct: 286 VEKIGVRKAIDFAEEADLIIYVVDSSTEMDQNDDDIIRMI--QSKKVIVLMNKSD 338 >gi|320451137|ref|YP_004203233.1| ribosome-associated GTPase EngA [Thermus scotoductus SA-01] gi|320151306|gb|ADW22684.1| ribosome-associated GTPase EngA [Thermus scotoductus SA-01] Length = 432 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 11/144 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKS+L+N +G + IV+ + TTR + + + V +DT GI Sbjct: 176 LAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVHFTFRGQPFVLVDTAGIRKRP 235 Query: 85 DSY-HKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNK 139 +S +L IR S I+ AD+V LVVD RELK+ H L + ++L++ K Sbjct: 236 ESLVEELAIRRSLKAIEEADVVLLVVDPFQVGDRELKLANHAL-----EAGKPVLLVITK 290 Query: 140 IDCVKPERLLE-QAEIANKLVFIE 162 D V+ E + + E+ KL +E Sbjct: 291 WDLVRKEEAPKVRRELKEKLAHLE 314 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 1/125 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L NR +G + ++V TR + G+V ++ + + +DT G+++ Sbjct: 4 VVIVGRPNVGKSSLFNRLLGKRSAVVADVPGVTRDLKEGVVESEKGRFLLVDTGGLWSG- 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + K + ++ A++V VD EL +++ + + K+ +IL+ K+D K Sbjct: 63 DRWEKKIQEKVDQALEDAEVVLFAVDGRSELTQADYEVAEYLRKKGRPVILVATKVDDPK 122 Query: 145 PERLL 149 E L Sbjct: 123 HEHYL 127 >gi|254251057|ref|ZP_04944375.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158] gi|124893666|gb|EAY67546.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158] Length = 495 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 21/205 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 232 GKLAKIREQLTHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 291 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ D ++ I +WS I+ AD+V ++DS + Sbjct: 292 TRDKVAQTIQVEGIPLHIIDTAGLRETDDEVERIGIARTWSEIERADVVLHLLDSRTGMT 351 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 + + IA R ++ +LNK D +E L + +SA +G Sbjct: 352 ADD----ERIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGDLTDVH----LSAKRGD 403 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 404 GIDLLRAEL---LRIAGWQAGAEGV 425 >gi|282901593|ref|ZP_06309512.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii CS-505] gi|281193519|gb|EFA68497.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii CS-505] Length = 460 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 10/159 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG VA+VG N GKS+L+N + +IVT TTR IV + I LDT G Sbjct: 223 RSGLKVAIVGRPNVGKSSLLNAWSQCDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D KL + S AD+V L +D+ + ++ +++ R LIL++NK Sbjct: 283 IRETVDQVEKLGVERSRQAANSADLVLLTIDATAGWQSGDEEIYQQVKHRP--LILVINK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 ID V+ + I + IEK +A + G +D+ Sbjct: 341 IDLVE-----DLGGICSP--NIEKAVKTAAAQNRGIEDL 372 >gi|254486973|ref|ZP_05100178.1| GTP-binding proten HflX [Roseobacter sp. GAI101] gi|214043842|gb|EEB84480.1| GTP-binding proten HflX [Roseobacter sp. GAI101] Length = 412 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 8/167 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR GA V T +R +V +I+ DT G + Sbjct: 194 VALVGYTNAGKSTLFNRLTGADVMAKDMLFATLDPTMRSLVLPDGPEIILSDTVGFISDL 253 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIA-KRSSRLILILNK 139 + R + + ADI+C V D SH E + N+ D+L + + +R + NK Sbjct: 254 PTELVAAFRATLEEVLAADIICHVRDISHAETEEQAQNVRDILASLGVPKETRSFEVWNK 313 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +D + P+R + + +SA G G + + + + L Sbjct: 314 LDLLAPDR---ADAVRARAERDPNVLAISAITGEGLEQMQSVIAEAL 357 >gi|322389428|ref|ZP_08062982.1| thiophene and furan oxidation protein ThdF [Streptococcus parasanguinis ATCC 903] gi|321143916|gb|EFX39340.1| thiophene and furan oxidation protein ThdF [Streptococcus parasanguinis ATCC 903] Length = 466 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + +DT G Sbjct: 230 REGISTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAG 289 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD+V LV+++ L LL EI++ S+R+IL LNK Sbjct: 290 IRETEDIVEQIGVERSKKALKEADLVLLVLNASEPLTDQDRQLL-EISQDSNRIIL-LNK 347 Query: 140 IDCVKPERL 148 +D PE++ Sbjct: 348 VDL--PEKI 354 >gi|261820577|ref|YP_003258683.1| GTP-binding protein EngA [Pectobacterium wasabiae WPP163] gi|261604590|gb|ACX87076.1| ribosome-associated GTPase EngA [Pectobacterium wasabiae WPP163] Length = 495 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + K + R +L+ NK D + Sbjct: 64 EDGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKMTVLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 P+ + A+ + + + + + ++A+ G G +L Sbjct: 124 DPD--MVTADFYS--LGMGEVYAIAASHGRGVTSLL 155 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + + +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYILIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 270 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L FI+ + +SA G G ++ Y C+T Sbjct: 330 GLSQEVRDQVKDMLDLRLGFIDFARIHFISALHGSGVGNLFESVMEAYSCAT 381 >gi|161505627|ref|YP_001572739.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866974|gb|ABX23597.1| hypothetical protein SARI_03803 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 472 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 219 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 278 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 279 IDGMPLHVIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPGDIWPDF 338 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + + ++ NK D +L +E+ + LV +SA G G D + N+L Sbjct: 339 IARLPKNLPITVVRNKADITG--EMLGISEVNGHSLV------RLSARTGEGVDVLRNHL 390 Query: 183 CSTL 186 ++ Sbjct: 391 KQSM 394 >gi|170723482|ref|YP_001751170.1| GTP-binding protein EngA [Pseudomonas putida W619] gi|229784138|sp|B1JDV4|DER_PSEPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169761485|gb|ACA74801.1| small GTP-binding protein [Pseudomonas putida W619] Length = 487 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G S + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD V +VD+ + + + + KR+ IL+ NKID + Sbjct: 64 EVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKSAILVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + +AE + + + V+ ++G G + ++ + +P Sbjct: 124 DAD--VARAEFSP--LGMGNAIPVAGSQGRGINQLMESVLGHIP 163 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + +V + TTR + + F+DT G+ Sbjct: 195 IAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTTRDSIYIPFERDNEKYTFIDTAGVRKRG 254 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R I+I LNK Sbjct: 255 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRAIVIALNK 312 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D ++ ER + E+ +L F++ +SA G G Sbjct: 313 WDGMESGERDYVKTELERRLFFVDFADIHFISALHGTGV 351 >gi|297581162|ref|ZP_06943086.1| GTP-binding protein [Vibrio cholerae RC385] gi|297534478|gb|EFH73315.1| GTP-binding protein [Vibrio cholerae RC385] Length = 494 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 7/179 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L V + + + + IL++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QISDL 201 + AE + +++ + ++A G G +++ + P A + S Q+ DL Sbjct: 124 DAD--AASAEFWQ--LGMDQMYQIAAAHGRGVGALIDRALN--PFAEQMESEQAQLEDL 176 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ K Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRK 267 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLSLDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|300983699|ref|ZP_07176709.1| tRNA modification GTPase TrmE [Escherichia coli MS 200-1] gi|300306872|gb|EFJ61392.1| tRNA modification GTPase TrmE [Escherichia coli MS 200-1] gi|315285497|gb|EFU44942.1| tRNA modification GTPase TrmE [Escherichia coli MS 110-3] Length = 475 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 222 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 281 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 282 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 341 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 342 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 394 Query: 184 STL 186 ++ Sbjct: 395 QSM 397 >gi|229551112|ref|ZP_04439837.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus LMS2-1] gi|258541097|ref|YP_003175596.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus Lc 705] gi|229315504|gb|EEN81477.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus LMS2-1] gi|257152773|emb|CAR91745.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus Lc 705] Length = 462 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATAIVGRPNVGKSSLLNHMLHEEKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S I AD++ LV+D L LL A + + I++LNK Sbjct: 282 IHDTTDKVEKIGVERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADK--KRIIVLNK 339 Query: 140 IDCVKPERL 148 D P RL Sbjct: 340 QDL--PARL 346 >gi|227112682|ref|ZP_03826338.1| GTP-binding protein EngA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 495 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + K + R +L+ NK D + Sbjct: 64 EDGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKTTVLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 P+ + A+ + + + + + ++A+ G G +L Sbjct: 124 DPD--MVTADFYS--LGMGEVYAIAASHGRGVTSLL 155 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 270 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + E + +L FI+ + +SA G G ++ Y C+T Sbjct: 330 GLSQEVREQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVTEAYSCAT 381 >gi|153828302|ref|ZP_01980969.1| GTP-binding protein [Vibrio cholerae 623-39] gi|254285481|ref|ZP_04960445.1| GTP-binding protein [Vibrio cholerae AM-19226] gi|148876256|gb|EDL74391.1| GTP-binding protein [Vibrio cholerae 623-39] gi|150424343|gb|EDN16280.1| GTP-binding protein [Vibrio cholerae AM-19226] Length = 494 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 7/179 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L V + + + + IL++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QISDL 201 + AE + +++ + ++A G G +++ + P A + S Q+ DL Sbjct: 124 DAD--AASAEFWQ--LGMDQMYQIAAAHGRGVGALIDRALN--PFAEQMESEQAQLEDL 176 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ K Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRK 267 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLSFDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|296876607|ref|ZP_06900657.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis ATCC 15912] gi|296432426|gb|EFH18223.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis ATCC 15912] Length = 466 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + +DT G Sbjct: 230 REGISTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAG 289 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD+V LV+++ L LL EI++ S+R+IL LNK Sbjct: 290 IRETEDIVEQIGVERSKKALKEADLVLLVLNASEPLTDQDRQLL-EISQDSNRIIL-LNK 347 Query: 140 IDCVKPERL 148 +D PE++ Sbjct: 348 VDL--PEKI 354 >gi|300947531|ref|ZP_07161709.1| tRNA modification GTPase TrmE [Escherichia coli MS 116-1] gi|300452880|gb|EFK16500.1| tRNA modification GTPase TrmE [Escherichia coli MS 116-1] Length = 460 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 207 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 266 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 267 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 326 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 327 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 379 Query: 184 STL 186 ++ Sbjct: 380 QSM 382 >gi|153216257|ref|ZP_01950357.1| GTP-binding protein [Vibrio cholerae 1587] gi|124114402|gb|EAY33222.1| GTP-binding protein [Vibrio cholerae 1587] Length = 494 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 7/179 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L V + + + + IL++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QISDL 201 + AE + +++ + ++A G G +++ + P A + S Q+ DL Sbjct: 124 DAD--AASAEFWQ--LGMDQMYQIAAAHGRGVGALIDRALN--PFAEQMESEQAQLEDL 176 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ K Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRK 267 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLSLDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|153800614|ref|ZP_01955200.1| GTP-binding protein [Vibrio cholerae MZO-3] gi|153824529|ref|ZP_01977196.1| GTP-binding protein [Vibrio cholerae MZO-2] gi|229513098|ref|ZP_04402564.1| GTP-binding protein EngA [Vibrio cholerae TMA 21] gi|229523415|ref|ZP_04412822.1| GTP-binding protein EngA [Vibrio cholerae TM 11079-80] gi|229525408|ref|ZP_04414813.1| GTP-binding protein EngA [Vibrio cholerae bv. albensis VL426] gi|229530107|ref|ZP_04419497.1| GTP-binding protein EngA [Vibrio cholerae 12129(1)] gi|254225026|ref|ZP_04918640.1| GTP-binding protein [Vibrio cholerae V51] gi|124123903|gb|EAY42646.1| GTP-binding protein [Vibrio cholerae MZO-3] gi|125622413|gb|EAZ50733.1| GTP-binding protein [Vibrio cholerae V51] gi|149741747|gb|EDM55776.1| GTP-binding protein [Vibrio cholerae MZO-2] gi|229333881|gb|EEN99367.1| GTP-binding protein EngA [Vibrio cholerae 12129(1)] gi|229338989|gb|EEO04006.1| GTP-binding protein EngA [Vibrio cholerae bv. albensis VL426] gi|229339778|gb|EEO04793.1| GTP-binding protein EngA [Vibrio cholerae TM 11079-80] gi|229349991|gb|EEO14945.1| GTP-binding protein EngA [Vibrio cholerae TMA 21] gi|327483547|gb|AEA77954.1| GTP-binding protein EngA [Vibrio cholerae LMA3894-4] Length = 494 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 7/179 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L V + + + + IL++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QISDL 201 + AE + +++ + ++A G G +++ + P A + S Q+ DL Sbjct: 124 DAD--AASAEFWQ--LGMDQMYQIAAAHGRGVGALIDRALN--PFAEQMESEQAQLEDL 176 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ K Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRK 267 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLSLDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|326793316|ref|YP_004311137.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427] gi|326544080|gb|ADZ85939.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427] Length = 460 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR +V ++ LDT G Sbjct: 220 REGVKTAIVGRPNVGKSSLLNALLEENKAIVTDIPGTTRDVVEAYLNIDGIPFQLLDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S S+I+ AD+V ++VDSH L ++L+++ ++ +I I NK Sbjct: 280 IRETEDIVEKIGVERSKSSIEEADLVLMLVDSHVGLLDKDQEILEQV--KNKHVIYIFNK 337 Query: 140 ID 141 D Sbjct: 338 TD 339 >gi|32034848|ref|ZP_00134954.1| COG0486: Predicted GTPase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208954|ref|YP_001054179.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae L20] gi|166200465|sp|A3N2D8|MNME_ACTP2 RecName: Full=tRNA modification GTPase mnmE gi|126097746|gb|ABN74574.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 452 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 212 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 271 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + S + + Sbjct: 272 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQ-SIPVTV 330 Query: 136 ILNKIDC 142 I NK+D Sbjct: 331 IRNKVDL 337 >gi|293572712|ref|ZP_06683676.1| tRNA modification GTPase TrmE [Enterococcus faecium E980] gi|291607204|gb|EFF36562.1| tRNA modification GTPase TrmE [Enterococcus faecium E980] Length = 465 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ L LL+ A + I++LNK Sbjct: 285 IRETEDVVERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATSGLKRIILLNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D P +L + E NK E F +S K G D Sbjct: 343 TDL--PAQL--EQEKLNKWNENEPVFSISVAKNDGLD 375 >gi|227328671|ref|ZP_03832695.1| GTP-binding protein EngA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 495 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + K + R +L+ NK D + Sbjct: 64 EDGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKTTVLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 P+ + A+ + + + + + ++A+ G G +L Sbjct: 124 DPD--MVTADFYS--LGMGEVYAIAASHGRGVTSLL 155 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 270 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + E + +L FI+ + +SA G G ++ Y C+T Sbjct: 330 GMSQEAREQVKETLDMRLGFIDFARIHFISALHGSGVGNLFESVTEAYSCAT 381 >gi|332977201|gb|EGK13997.1| ribosome-associated GTPase EngA [Desmospora sp. 8437] Length = 455 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV--RGIVSEKESQIVFLDTPGI- 80 VA+VG N GKSTL NR G +++IV K TR + RG S + ++ DT G+ Sbjct: 20 VVAIVGRPNVGKSTLFNRIAGERIAIVEDKPGITRDRIYTRGDWSGRHFHVI--DTGGLE 77 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F KD + + + I+ AD++ +VD H + ++ + + + + ++L +NK+ Sbjct: 78 FGKKDEVVEHIRHQAELAIEEADVILFMVDGHDGVTSTDEEVSRILHRSNKPVVLAVNKL 137 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D VK E +L F ++ +S+ G G D+L+ + LP Sbjct: 138 DDVKHH---ENVYEFYRLGF-DEPIGISSLHGTGTGDLLDAVVDRLP 180 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 8/138 (5%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E +++ D R V+++G N GKS+LVNR +G + IV+ TTR V + + Sbjct: 183 EEEEYDSDTIR---VSIIGRPNVGKSSLVNRILGEERVIVSPVAGTTRDAVDTPFTHEGQ 239 Query: 71 QIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 V +DT G+ Y K + + I+ AD+V +V+D E + IA Sbjct: 240 DYVIVDTAGMRKRGKVYETTEKYSVLRALRAIERADVVLIVLDG-TEGVTEQDKRVAGIA 298 Query: 128 KRSSR-LILILNKIDCVK 144 + R + ++NK D V+ Sbjct: 299 HDAGRGAVFVVNKWDAVE 316 >gi|315296896|gb|EFU56184.1| tRNA modification GTPase TrmE [Escherichia coli MS 16-3] Length = 475 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 222 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 281 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 282 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 341 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 342 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 394 Query: 184 STL 186 ++ Sbjct: 395 QSM 397 >gi|308050453|ref|YP_003914019.1| ribosome-associated GTPase EngA [Ferrimonas balearica DSM 9799] gi|307632643|gb|ADN76945.1| ribosome-associated GTPase EngA [Ferrimonas balearica DSM 9799] Length = 495 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR G + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTGTRDALVADFPGLTRDRKYGQANLAGHDFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R R +L+ NK D + Sbjct: 64 EEGIETKMAEQSLRAIEEADVVLFLVDARAGLTAADEAISKHLRSREKRTLLVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 20/197 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ K Sbjct: 209 LAIIGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRK 268 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK-- 139 Y K + + I+ A++V LVVD+ L LL L++ +NK Sbjct: 269 SVYEAVEKFSVIKTLQAIEDANVVLLVVDAREGLSDQDLSLLGFTLNAGRALVVAVNKWD 328 Query: 140 -IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCD----------DVLNYLCSTL 186 +D E + + E+ +L FI+ K +SA G G D CST Sbjct: 329 GLDMTVKEDI--KRELDRRLGFIDFAKLHFISALHGTGVGHLFESVQEAYDSATRRCSTS 386 Query: 187 PLAPWVYSADQISDLPM 203 L ++ A PM Sbjct: 387 LLTKIMHMAQDDHQPPM 403 >gi|227833144|ref|YP_002834851.1| cytidylate kinase [Corynebacterium aurimucosum ATCC 700975] gi|227454160|gb|ACP32913.1| cytidylate kinase [Corynebacterium aurimucosum ATCC 700975] Length = 528 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 14/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR V + + DT G Sbjct: 95 TVAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFFVQDTGGWDPN 154 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + + AD++ VVD+ KV I + +A++ R +IL+ NK Sbjct: 155 VKGIHAAIARQAEQAMDTADVIVFVVDT----KVGITETDAVMARKLQRSEVPVILVSNK 210 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D E + A++A + + VSA G G DVL+ + P P Sbjct: 211 FDS---ETMY--ADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRLFPEEP 257 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ + S+V + TT V +V + F+DT G + Sbjct: 269 VALVGKPNVGKSSLLNKLTAEERSVVDNAAGTTVDPVDSLVQLDQRLWKFIDTAGLRKKV 328 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ +++D+ +E+ +L I + L++ NK Sbjct: 329 KNAQGHEYYASLRTR-GVIDAAEVCIMLIDASQEVSEQDQRVLNMILEAGKALVIAFNKW 387 Query: 141 DCVKPER 147 D V +R Sbjct: 388 DLVDEDR 394 >gi|156843181|ref|XP_001644659.1| hypothetical protein Kpol_1056p1 [Vanderwaltozyma polyspora DSM 70294] gi|156115307|gb|EDO16801.1| hypothetical protein Kpol_1056p1 [Vanderwaltozyma polyspora DSM 70294] Length = 505 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 12/154 (7%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E + +QD R + L+G N GKS+L+N+ ++SIV+ TTR + I++ Sbjct: 245 EKANILQDGIR---MTLIGVPNTGKSSLINKITSDEISIVSDIPGTTRDSIDAIININGY 301 Query: 71 QIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRE--LKVNIHDLLKE 125 +++ DT GI KD+ K L I S +DI +++D + + L I DLL+ Sbjct: 302 KVIISDTAGI--RKDTNEKIEVLGIERSKKMASRSDICLVLIDPNNKPLLSNEIIDLLQA 359 Query: 126 IAKRSSRLILILNKIDCVKPERLLE--QAEIANK 157 + L +I+NK D +K E +LE Q EI K Sbjct: 360 PEIKRKHLRIIVNKTDLIKNENILENLQEEIVTK 393 >gi|307261970|ref|ZP_07543627.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868331|gb|EFN00151.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 452 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 212 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 271 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + S + + Sbjct: 272 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQ-SIPVTV 330 Query: 136 ILNKIDC 142 I NK+D Sbjct: 331 IRNKVDL 337 >gi|120602958|ref|YP_967358.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris DP4] gi|205829135|sp|A1VER5|MNME_DESVV RecName: Full=tRNA modification GTPase mnmE gi|120563187|gb|ABM28931.1| tRNA modification GTPase trmE [Desulfovibrio vulgaris DP4] Length = 457 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 14/211 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+N +G + +IVT TTR + ++ I DT G+ Sbjct: 223 VVLAGQVNAGKSSLMNALLGRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETG 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + +R+S + AD+V LV D+ + L+ +LL+ R++++ NK D ++ Sbjct: 283 DIVEQEGVRMSRDLVAQADLVLLVTDATQGLQGPELELLRHAGP--ERVLVVFNKTDLLE 340 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 R+L A + V V+A G G + ++ + + + A + P Sbjct: 341 -GRILPSAPEGCRSVH------VAAASGDGVESLVTAIRAAVLAATGAGEPEAGELAPNM 393 Query: 205 HFTAEITR-----EKLFLHLHKEIPYSSCVV 230 A + + ++L + +PY C V Sbjct: 394 RQAAALDKAATILDELAGDIRAHVPYDLCGV 424 >gi|225871164|ref|YP_002747111.1| GTP-binding protein EngA [Streptococcus equi subsp. equi 4047] gi|225700568|emb|CAW95070.1| GTP-binding protein EngA [Streptococcus equi subsp. equi 4047] Length = 446 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 15 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDV 74 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + ++ R+++ +IL++NK+D Sbjct: 75 DAPFMEQIKHQAHIAMDEADVIVFVV-SGKEGVTDADEYVSKLLYRTNKPVILVVNKVD- 132 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + + + + + +F VS+ G G DVL+ + LP+ V + D I Sbjct: 133 -NPEMRNDIYDFYS--LGLGDSFPVSSVHGIGTGDVLDAIIDNLPIEEPVENDDVI 185 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 12/127 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + +++ Q +DT G+ + Sbjct: 188 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTSFTDESGQAYTMIDTAGMRKSG 247 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 Y K + + I +DIV +V+++ I D K IA + +I+++ Sbjct: 248 KVYENTEKYSVMRAMRAIDRSDIVLMVINAEE----GIRDYDKRIAGFAHEAGKGMIIVV 303 Query: 138 NKIDCVK 144 NK D ++ Sbjct: 304 NKWDTIE 310 >gi|161723129|ref|YP_443727.2| tRNA modification GTPase TrmE [Burkholderia thailandensis E264] gi|167620891|ref|ZP_02389522.1| tRNA modification GTPase TrmE [Burkholderia thailandensis Bt4] gi|205829163|sp|Q2STM2|MNME_BURTA RecName: Full=tRNA modification GTPase mnmE Length = 467 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 20/206 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ L Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDARSGLG 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKG 172 + + IA R ++ +LNK D + P + A + E +SA +G Sbjct: 321 PDD----EAIAARFPAGVPVVRVLNKTDLTEAPASVARVGSGAERADLCE--VRLSAKRG 374 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 375 DGIDLLRGEL---LRIAGWQAGAESV 397 >gi|225848630|ref|YP_002728793.1| GTP-binding protein EngA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644538|gb|ACN99588.1| ribosome-associated GTPase EngA [Sulfurihydrogenibium azorense Az-Fu1] Length = 443 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG NAGKS+L+N + + +V+ TTR V + + + +FLDT GI + Sbjct: 183 VAIVGKPNAGKSSLLNAILNEERVLVSDIPGTTRDTVDTLFEKDSQRFLFLDTAGIRKRS 242 Query: 84 KDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K Y + S I+ AD+V LV+D+ + I +R ++++NKID Sbjct: 243 KVEYGVEFFSVGRSIEAIEKADVVVLVIDAIIGATEQDQKIAGLIQRRYKPAVIVINKID 302 Query: 142 CVKPERLLEQA--EIANKLVFIEKTFMV--SATKGHGCDDVLNYLC 183 +K E+ +E+ ++ KL F++ +V SA K G +++LN + Sbjct: 303 MLK-EKDIEKVIRQVKEKLYFLDYAPIVLTSAYKKIGIEELLNQIV 347 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 27/175 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV---FLDTPG-I 80 VA+VG N GKS+L NR +G + +IV TR I+S+ E + V +DT G I Sbjct: 4 VAIVGRPNVGKSSLFNRLIGKRKAIVEDIPGVTRD---RIISQTEWRGVKFEVVDTGGYI 60 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 + +D + + + ++ AD++ VVD K + L KEIA + +I+ Sbjct: 61 TSDEDKFAPYIRKQVEKELQEADLLVFVVDG----KQGLTPLDKEIATLLHRTEKPVIVA 116 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLP 187 +NKID + E+L + F E F +S + G D+L+ + +P Sbjct: 117 VNKIDDPEKEKLAYE--------FYELGFQDVIPISTIQKLGIADLLDKIYEYIP 163 >gi|86130381|ref|ZP_01048981.1| tRNA modification GTPase, ThdF family [Dokdonia donghaensis MED134] gi|85819056|gb|EAQ40215.1| tRNA modification GTPase, ThdF family [Dokdonia donghaensis MED134] Length = 462 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 14/164 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + +S F+DT GI + Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELSIGGIGFRFIDTAGIRETE 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCL------VVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D L I+ ++ IK A +V L V+ +K+ I + + + L+++ N Sbjct: 284 DVIEGLGIKKTFEKIKQAQVVVLLHTASEVIHQTASVKLEIEKIKNQFPLKP--LLVVAN 341 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 KID + P L EIA K I+ ++SA + G D + N L Sbjct: 342 KIDALSPTEL---NEIATK---IDNLHLLSAKENQGVDALKNKL 379 >gi|241889088|ref|ZP_04776392.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379] gi|241864337|gb|EER68715.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379] Length = 460 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+L+N + +IVT TTR ++ V+ K I +DT GI D Sbjct: 226 AIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDD 285 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 ++ ++ S ++ AD+V +++S EL + +LLK +++ I+ILNK+D Sbjct: 286 IVEQIGVKRSKEALEKADLVLFLLNSSEELTEDDKELLKLTEGKTT--IVILNKLDL--- 340 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 E ++ AE+ KL + S T G D++ Sbjct: 341 ETKIDIAEV-EKLAYNHPIIKTSMTTYKGIDEL 372 >gi|218290942|ref|ZP_03494999.1| small GTP-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|218239107|gb|EED06310.1| small GTP-binding protein [Alicyclobacillus acidocaldarius LAA1] Length = 442 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR VG +VSIV TR + G +DT GI + Sbjct: 5 VVAIVGRANVGKSTLFNRLVGRRVSIVEDTPGVTRDRIYGKSEWNGVPFRVIDTGGIEMD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +D L+ + I AD++ VVD R+ + + ++ +R+ + ++L +NK+D Sbjct: 65 EEDEIGNLIRVQAQIAIDEADVILFVVDG-RQGVTQADEHVAQVLRRAHKPVVLGVNKLD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V+ L + +L F E SA G G D+L+ + + LP Sbjct: 124 HVEQHALSYE---FYRLGFGE-PIPFSAEHGRGTGDLLDAVVAALP 165 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A +G N GKS+LVNR +G + +V+ TTR V + V +DT G+ Sbjct: 179 IAFIGRPNVGKSSLVNRLLGEERVMVSPVAGTTRDAVDTPLERDGQSYVLVDTAGMRRKG 238 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSH 112 Y ++ + + + AD+ +V+D+ Sbjct: 239 KVYERIEKYSVLRALRALDRADVAFVVLDAQ 269 >gi|332800542|ref|YP_004462041.1| tRNA modification GTPase mnmE [Tepidanaerobacter sp. Re1] gi|332698277|gb|AEE92734.1| tRNA modification GTPase mnmE [Tepidanaerobacter sp. Re1] Length = 462 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 7/167 (4%) Query: 21 RSGCVALV-GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G L+ G TN GKS+L+N + + +IVT TTR I+ + + I +DT G Sbjct: 222 REGLSTLILGNTNVGKSSLLNALLQEERAIVTDIPGTTRDIIEEYIDIQGIPIKIIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ I + ++ A++V L++D R+L + L++ + +++ I ++NK Sbjct: 282 IRQTTDEVEKIGINRAMKHLQEAELVLLMIDVSRKLTDDDKRLIELVGDKTT--ITVINK 339 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +D +++ EI KLV K VSA K G D++ + T+ Sbjct: 340 VDLPVA---VDEYEI-KKLVPEAKIVKVSALKQEGIDELKTVIYDTI 382 >gi|300925531|ref|ZP_07141405.1| tRNA modification GTPase TrmE [Escherichia coli MS 182-1] gi|300418356|gb|EFK01667.1| tRNA modification GTPase TrmE [Escherichia coli MS 182-1] Length = 478 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 225 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 284 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 285 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 344 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 345 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 397 Query: 184 STL 186 ++ Sbjct: 398 QSM 400 >gi|193215037|ref|YP_001996236.1| GTP-binding protein EngA [Chloroherpeton thalassium ATCC 35110] gi|238692727|sp|B3QZ96|DER_CHLT3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193088514|gb|ACF13789.1| small GTP-binding protein [Chloroherpeton thalassium ATCC 35110] Length = 435 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE---SQIVFLDTPGI 80 VA+VG N GKSTL NR + +V+IV TR R SE E Q +DT G Sbjct: 4 TVAIVGRPNVGKSTLFNRILNKRVAIVDDVPGVTRD--RNF-SEAEWCGKQFSLIDTGGY 60 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILIL 137 D++ ++ S ++ A+I+ LVVD ++ + I +LL++ A + + L + Sbjct: 61 SRTGDTFSAAVLEQSLIALQEANIIILVVDLRTGITDIDLEITELLRKQASEKT-VFLAV 119 Query: 138 NKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D L+E A++ KL E F VSA G G ++L+ + + +P Sbjct: 120 NKVD----NNLMESDAQLFRKLGLSEPYF-VSALDGRGVAELLDAVIAHIP 165 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 + ++G N GKS+ VN +G IVT TTR V + +DT G+ Sbjct: 178 LTVIGRPNVGKSSFVNAILGQNRQIVTDIPGTTRDAVDSRFKRNGQDFLLIDTAGLRRKA 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + I+ D+ +++D+ + L+ ++ A++ +++ +NK D Sbjct: 238 KVDDNIELFSALRTEKAIERCDVAIILLDATQGLENQDLKVINAAAQKKRGMVIAVNKWD 297 Query: 142 CVKPE 146 ++ + Sbjct: 298 LIEKD 302 >gi|187925952|ref|YP_001897594.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN] gi|187717146|gb|ACD18370.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN] Length = 464 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 8/145 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++T E V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLTRIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ + +D K+ I +WS I+ AD+V ++D+ + Sbjct: 261 TRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTWSEIERADVVLHLLDARTGMT 320 Query: 117 VNIHDLLKEIAKRSSRLILILNKID 141 D + R ++ +LNK D Sbjct: 321 AE-DDAIAGRFPRGVPVVRVLNKTD 344 >gi|55821017|ref|YP_139459.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMG 18311] gi|81560616|sp|Q5M4H3|MNME_STRT2 RecName: Full=tRNA modification GTPase mnmE gi|55737002|gb|AAV60644.1| thiophene and furan oxidation protein [Streptococcus thermophilus LMG 18311] Length = 456 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 220 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L LL +I++ S+R+IL LNK Sbjct: 280 IRDTDDVVEKIGVERSKKALEEADLVLLVLNSSEPLTDQDRTLL-DISQNSNRIIL-LNK 337 Query: 140 ID---CVKPERLLE 150 D ++ E L E Sbjct: 338 TDLPQAIQTEELPE 351 >gi|324008034|gb|EGB77253.1| tRNA modification GTPase TrmE [Escherichia coli MS 57-2] Length = 481 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 228 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 287 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 288 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 347 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 348 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 400 Query: 184 STL 186 ++ Sbjct: 401 QSM 403 >gi|91762518|ref|ZP_01264483.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1002] gi|91718320|gb|EAS84970.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1002] Length = 443 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 70/122 (57%), Gaps = 5/122 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G TNAGKS+L+N +IV+ TTR ++ ++ +V DT GI ++K Sbjct: 217 IAIIGPTNAGKSSLLNHLSNRDAAIVSEIAGTTRDVIEIHLNIDGYPVVVSDTAGIRDSK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + K I+L+ ++AD+ +V+D+ ++ +LKE+ S+ IL++NK D +K Sbjct: 277 NEIEKKGIKLALDKAENADLKLIVIDAKN---IDFKGVLKELMDESA--ILVVNKSDLLK 331 Query: 145 PE 146 + Sbjct: 332 ED 333 >gi|77968732|gb|ABB10112.1| tRNA modification GTPase trmE [Burkholderia sp. 383] Length = 489 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ + Sbjct: 254 VVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETE 313 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +WS I+ AD+V ++DS + + + IA R ++ +LNK D Sbjct: 314 DEVERIGIARTWSEIERADVVLHLLDSRNGMTADD----ETIAARFPGGVPVVRVLNKTD 369 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +E L + +SA +G G D + L L +A W A+ + Sbjct: 370 LTGVAACVEHPAAEGDLTEVH----LSAKRGDGIDMLRAEL---LRIAGWQAGAEGV 419 >gi|37522021|ref|NP_925398.1| tRNA modification GTPase TrmE [Gloeobacter violaceus PCC 7421] gi|46577365|sp|Q7NHT3|MNME_GLOVI RecName: Full=tRNA modification GTPase mnmE gi|35213020|dbj|BAC90393.1| glr2452 [Gloeobacter violaceus PCC 7421] Length = 453 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 3/126 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + +IVT TTR +V +++ + + LDT G Sbjct: 216 RTGLKVAIVGRPNVGKSSLLNAWSRTDRAIVTDLPGTTRDVVESMLNVQGIPVQVLDTAG 275 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I A D+ ++ I S + + AD+V LV+D D+ ++ +R +I+++NK Sbjct: 276 IREATDTVERIGIERSHAAAREADLVLLVIDRTEGWTCADSDIFAQVRERP--VIVVVNK 333 Query: 140 IDCVKP 145 D P Sbjct: 334 SDLEGP 339 >gi|159902748|ref|YP_001550092.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9211] gi|159887924|gb|ABX08138.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9211] Length = 455 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 21/184 (11%) Query: 6 ITFFNEHKDFVQDNSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR 58 I NE + V D ++ GC+ AL+G N GKS+++NR + +IVT TTR Sbjct: 204 IKINNELQQLVID-AKQGCIFRNGLKIALIGLPNVGKSSVLNRLSKRERAIVTALPGTTR 262 Query: 59 SIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN 118 ++ + + I LDT GI + D K+ + S + + ADIV + D Sbjct: 263 DLLESEIILEGIPITLLDTAGIRSTNDEVEKIGVAKSKNALMTADIVLFIFDMSIGWTTA 322 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 DL +I K+ L LI NK D +K ++ QAEI + SA G G +++ Sbjct: 323 DQDLFDQIPKQMPTL-LIGNKAD-IKVQQDTNQAEI-----------IFSALTGQGENNL 369 Query: 179 LNYL 182 + L Sbjct: 370 IQAL 373 >gi|330807651|ref|YP_004352113.1| GTP-binding protein engA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375759|gb|AEA67109.1| GTP-binding protein engA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 490 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRTYILVDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NK+D + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDAKAGFTAADQMIAEHLRKRNKRSYVVANKVDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +AE A + + + ++ G G +L + P Sbjct: 124 DPD--MARAEFAP--LGMGQAIPIAGAHGRGITQMLKIALESFP 163 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 10/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ +NK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIAINK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 D + P ER + E+ +L F++ +SA G G ++ Sbjct: 316 WDGMTPSERDFVKIELQRRLFFVDFADIHFISALHGTGVGNL 357 >gi|289209758|ref|YP_003461824.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. K90mix] gi|288945389|gb|ADC73088.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. K90mix] Length = 437 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 18/162 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVGA N GKS+L+NR ++V+IVT + TTR ++R ++ + +DT G+ + Sbjct: 220 LALVGAPNVGKSSLMNRLAESEVAIVTDRPGTTRDVLRSPIAIHGIPVELIDTAGLHASD 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K+ ++ + AD++ + D R V + EI + + + NK DCV Sbjct: 280 DPVEKIGMQRAREAATGADLILDLRDLTRPEAVPELEAPPEIPR-----LTVWNKQDCVA 334 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 R E ++SA G G D++ + L Sbjct: 335 DSRSTE-------------GIVISARTGAGIDELKQAIVERL 363 >gi|324012741|gb|EGB81960.1| tRNA modification GTPase TrmE [Escherichia coli MS 60-1] Length = 481 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 228 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 287 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 288 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 347 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 348 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 400 Query: 184 STL 186 ++ Sbjct: 401 QSM 403 >gi|301324999|ref|ZP_07218552.1| tRNA modification GTPase TrmE [Escherichia coli MS 78-1] gi|300848114|gb|EFK75874.1| tRNA modification GTPase TrmE [Escherichia coli MS 78-1] Length = 479 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 226 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 285 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 286 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 345 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 346 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 398 Query: 184 STL 186 ++ Sbjct: 399 QSM 401 >gi|215489046|ref|YP_002331477.1| tRNA modification GTPase TrmE [Escherichia coli O127:H6 str. E2348/69] gi|312967884|ref|ZP_07782096.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75] gi|254811475|sp|B7UMH3|MNME_ECO27 RecName: Full=tRNA modification GTPase mnmE gi|215267118|emb|CAS11565.1| GTPase [Escherichia coli O127:H6 str. E2348/69] gi|312287445|gb|EFR15353.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75] Length = 454 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEL-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|218437880|ref|YP_002376209.1| GTP-binding protein EngA [Cyanothece sp. PCC 7424] gi|226741132|sp|B7KHD2|DER_CYAP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218170608|gb|ACK69341.1| small GTP-binding protein [Cyanothece sp. PCC 7424] Length = 452 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N G +IV+ TTR + +V E Q +DT GI K Sbjct: 179 VAIVGRPNVGKSSLLNALTGENRAIVSPISGTTRDAIDMVVQRNEQQYRLIDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ AD+V V+D+ + L I+ +L++NK D Sbjct: 239 NVEYGAEFFSINRAFKAIRRADVVLFVIDALDGITDQDLKLAGRISDEGRATVLVINKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 V + Q + ++L F++ + VSA G + +L+ Sbjct: 299 AVDKDSYTIYEYQKMLESRLYFMDWAEMIFVSALTGKRVEKILD 342 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKSTLVNR G + +IV + TR ++ +DT G +F+ Sbjct: 6 VAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLVFDD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + + + A VVD ++ + +S +IL +NK + V Sbjct: 66 DTEFLPLIREQAMTALAEAHAAIFVVDGQTGPTPADEEIANWLRSQSVPIILAVNKCESV 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + L++ +E + + + + +S+ G G ++L+ L LP Sbjct: 126 E-QGLIQASEFWQ--LGLGEPYPISSIHGSGTGELLDKLIIYLP 166 >gi|262182365|ref|ZP_06041786.1| GTP-binding protein EngA [Corynebacterium aurimucosum ATCC 700975] Length = 537 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 14/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR V + + DT G Sbjct: 104 TVAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFFVQDTGGWDPN 163 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + + AD++ VVD+ KV I + +A++ R +IL+ NK Sbjct: 164 VKGIHAAIARQAEQAMDTADVIVFVVDT----KVGITETDAVMARKLQRSEVPVILVSNK 219 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D E + A++A + + VSA G G DVL+ + P P Sbjct: 220 FDS---ETMY--ADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRLFPEEP 266 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ + S+V + TT V +V + F+DT G + Sbjct: 278 VALVGKPNVGKSSLLNKLTAEERSVVDNAAGTTVDPVDSLVQLDQRLWKFIDTAGLRKKV 337 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ +++D+ +E+ +L I + L++ NK Sbjct: 338 KNAQGHEYYASLRTR-GVIDAAEVCIMLIDASQEVSEQDQRVLNMILEAGKALVIAFNKW 396 Query: 141 DCVKPER 147 D V +R Sbjct: 397 DLVDEDR 403 >gi|330723544|gb|AEC45914.1| GTP-binding protein Der [Mycoplasma hyorhinis MCLD] Length = 433 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 12/166 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKSTL N+ VG KVSI+ TR + V + +DT GI Sbjct: 4 IVALIGKPNVGKSTLFNKLVGKKVSIIHDSPGVTRDRIYSKVEWAGKEFYLIDTGGIEIE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 S+ + + + I+ A+++ +VD E+ + H ++ + K S ++++ NK Sbjct: 64 NKSFQEQIRIQTQIAIEEANLIIFLVDGRVEIDSDDHFVIDLLRKSSKKVLIAANK---- 119 Query: 144 KPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTL 186 LE + + ++ E F +SA G G D+L+ +L Sbjct: 120 -----LEGNKFFDTSIYSLGFEHIFPISAIHGEGVGDLLDETIRSL 160 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 6/138 (4%) Query: 14 DFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 DF ++ +A++G NAGKSTL+N+ SIV+ TTR V + + Sbjct: 161 DFTKEKENEAFRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDSVSSFIKIDKIDF 220 Query: 73 VFLDTPGIFN----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +DT GI A+ ++R +++++ A + +++D+ +EL L + Sbjct: 221 EIIDTAGIIRKSKIAQSVDFYALLR-AFNSLDDAQLSLILIDATQELSHFDARLAGYAFE 279 Query: 129 RSSRLILILNKIDCVKPE 146 + +IL++NK D ++ E Sbjct: 280 KQKPIILVVNKWDLIEKE 297 >gi|329768091|ref|ZP_08259600.1| tRNA modification GTPase mnmE [Gemella haemolysans M341] gi|328838246|gb|EGF87858.1| tRNA modification GTPase mnmE [Gemella haemolysans M341] Length = 460 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+L+N + +IVT TTR ++ V+ K I +DT GI D Sbjct: 226 AIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDD 285 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 ++ ++ S ++ AD+V +++S EL + +LLK +++ I+ILNK+D Sbjct: 286 IVEQIGVKRSKEALEKADLVLFLLNSSEELTEDDKELLKLTEGKTT--IVILNKLDL--- 340 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 E ++ AE+ KL + S T G D++ Sbjct: 341 ETKIDIAEV-EKLAYNHPIIKTSMTTYKGIDEL 372 >gi|324018442|gb|EGB87661.1| tRNA modification GTPase TrmE [Escherichia coli MS 117-3] Length = 479 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 226 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 285 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 286 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 345 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 346 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLK 398 Query: 184 STL 186 ++ Sbjct: 399 QSM 401 >gi|304405894|ref|ZP_07387552.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9] gi|304345137|gb|EFM10973.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9] Length = 461 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 8/177 (4%) Query: 21 RSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V A+VG N GKS+L+N + +IVT TTR ++ V+ + LDT G Sbjct: 221 REGIVTAIVGRPNVGKSSLLNALTQSNKAIVTDIPGTTRDVIEEFVTVNGIPLRLLDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S S ++ AD++ V++ + +L + L++++A R ++++I NK Sbjct: 281 IRETADVVERIGVERSNSALEEADLILYVLNRNEKLHDDDRQLMEKLAGR--QVVVIFNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D P++ LE AE+ VF + + + G D L + S L + S D Sbjct: 339 TDL--PQQ-LETAEVEQ--VFPAERIVPMSVLGEEGIDRLEEVISELFFEGRIESND 390 >gi|322387781|ref|ZP_08061390.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis ATCC 700779] gi|321141648|gb|EFX37144.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis ATCC 700779] Length = 457 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGIATAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDVVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ + ++ I Sbjct: 339 TDL--PEA-IETSELPDDVIRI 357 >gi|221212776|ref|ZP_03585752.1| GTP-binding protein HflX [Burkholderia multivorans CGD1] gi|221166989|gb|EED99459.1| GTP-binding protein HflX [Burkholderia multivorans CGD1] Length = 396 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 242 EAGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|258512903|ref|YP_003186337.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479629|gb|ACV59948.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 465 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 8/185 (4%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 MGEI + + A+VG N GKS+L+N V + +IVT TTR ++ Sbjct: 208 MGEIDALIRSAELGRVLRDGVATAIVGRPNVGKSSLLNALVERERAIVTDLPGTTRDVLE 267 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 ++ + + +DT GI +D ++ + S +++ A++V LV+D + Sbjct: 268 EYINLRGIPLRLIDTAGIRETEDVVERIGVARSRQSMQEAELVLLVLDGSEPPSPEDEAI 327 Query: 123 LKEIAKRSSRLILILNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 +E SR I++LNK+D + P + A A++L E VSA +G G D + + Sbjct: 328 ARE--SDGSRRIVVLNKVDRGIHP----DAARFADELAP-EGAVRVSAREGTGLDTLRDA 380 Query: 182 LCSTL 186 + + + Sbjct: 381 MVNKI 385 >gi|92115430|ref|YP_575358.1| tRNA modification GTPase TrmE [Chromohalobacter salexigens DSM 3043] gi|122419006|sp|Q1QS99|MNME_CHRSD RecName: Full=tRNA modification GTPase mnmE gi|91798520|gb|ABE60659.1| tRNA modification GTPase trmE [Chromohalobacter salexigens DSM 3043] Length = 458 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N +IVT TTR ++R + + +DT G+ + Sbjct: 223 VVIAGRPNAGKSSLLNALTERDSAIVTDIEGTTRDVLREYIHIDGMPLHVIDTAGLRDTP 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D+ K+ + +W I+ AD V L+VD+ + + L E R RL L+ NKID Sbjct: 283 DAIEKIGVARAWEEIEKADRVLLLVDATTTTQTDPMQLWPEFVARLPHPERLTLVRNKID 342 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 EQ++++ + +SA G G D++ +L + + Sbjct: 343 ESGE---TEQSDLSTSPPIVR----LSAKTGLGVDNLKEHLKAVM 380 >gi|55822936|ref|YP_141377.1| tRNA modification GTPase TrmE [Streptococcus thermophilus CNRZ1066] gi|116627781|ref|YP_820400.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMD-9] gi|81559421|sp|Q5LZW3|MNME_STRT1 RecName: Full=tRNA modification GTPase mnmE gi|122267622|sp|Q03KR8|MNME_STRTD RecName: Full=tRNA modification GTPase mnmE gi|55738921|gb|AAV62562.1| thiophene and furan oxidation protein [Streptococcus thermophilus CNRZ1066] gi|116101058|gb|ABJ66204.1| tRNA modification GTPase trmE [Streptococcus thermophilus LMD-9] gi|312278338|gb|ADQ62995.1| tRNA modification GTPase mnmE [Streptococcus thermophilus ND03] Length = 456 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 220 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L LL +I++ S+R+IL LNK Sbjct: 280 IRDTDDVVEKIGVERSKKALEEADLVLLVLNSSEPLTDQDRTLL-DISQNSNRIIL-LNK 337 Query: 140 ID---CVKPERLLE 150 D ++ E L E Sbjct: 338 TDLPQAIQTEELPE 351 >gi|254460403|ref|ZP_05073819.1| GTP-binding protein [Rhodobacterales bacterium HTCC2083] gi|206676992|gb|EDZ41479.1| GTP-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 490 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLADLRFTVIDTAGLEEA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D S M RL+ + ADI ++D+ + + + KRS+ +IL NK + Sbjct: 64 TDESLQGRMRRLTERAVDMADICLFMIDARAGVTPADQVFAEILRKRSAHVILAANKGEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + I + + + +SA G G +D+ L +PLA Sbjct: 124 SA----ADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTQL---MPLA 163 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 28/179 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG NAGKSTL+N +G + + TR + + I DT G+ Sbjct: 204 IAVVGRPNAGKSTLINMIMGEDRLLTGPEAGITRDAISLRSEWNGTHIRIFDTAGMRKKA 263 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 +D KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 264 KVQDKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVIVAVNK 321 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTF-------------MVSATKGHGCDDVLNYLCST 185 D + + NKL + ++F VSA G G D + + + S Sbjct: 322 WDI--------EDDKQNKLRDLRESFERLLPQLRGAPLVTVSAKTGRGLDRLHDAILSA 372 >gi|66472790|ref|NP_001018605.1| tRNA modification GTPase GTPBP3, mitochondrial precursor [Danio rerio] gi|82192604|sp|Q501Z5|GTPB3_DANRE RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial; AltName: Full=GTP-binding protein 3; Flags: Precursor gi|63100959|gb|AAH95801.1| GTP binding protein 3 [Danio rerio] Length = 500 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 10/176 (5%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V + G+TNAGKS+L+N +IV+ TTR ++ + ++ DT G Sbjct: 246 RSGVHVVIAGSTNAGKSSLLNLLTQRPAAIVSPTAGTTRDVLEVPLDIGGYPVLLSDTAG 305 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD------SHRELKVNIHDLLKEIAKRSSRL 133 + + DS + +R + ++ AD+ +VVD R + V + LK I +RSS+ Sbjct: 306 LRDTSDSVEQEGVRRARQRVEQADLSLVVVDLTQLPSERRHVPVFLRGHLKNILERSSQQ 365 Query: 134 ---ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ILILN+ D V E+ +L +S G +++L L +TL Sbjct: 366 QQHILILNESDLVSAEQQRSIQTSLQELSGAPSACFLSCHSRDGLEELLTLLHNTL 421 >gi|317504953|ref|ZP_07962902.1| ribosome-associated GTPase EngA [Prevotella salivae DSM 15606] gi|315663945|gb|EFV03663.1| ribosome-associated GTPase EngA [Prevotella salivae DSM 15606] Length = 437 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 13/171 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKSTL NR ++ +IV+ TTR G S + +DT G + Sbjct: 2 SNLVAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNSKEFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRL--ILI 136 N+ D + + R + AD+V +VD + + D +++A R ++L IL+ Sbjct: 62 VNSDDIFEDAIRRQVLVATEEADLVLFLVD----VSTGVTDWDEDVAMILRRAKLPVILV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D E AE KL E +SA G G D+L+ + LP Sbjct: 118 ANKVD--NNSEYYEAAEFY-KLGLGEPQ-CISAATGGGTGDLLDLIIDKLP 164 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S I+++D+ L++D+ R ++ ++ + I K L++++NK D Sbjct: 239 VSEDLEFYSVMRSIRAIENSDVCILMLDATRGVEAQDMNIFQLIQKNKKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 >gi|304372871|ref|YP_003856080.1| Predicted GTPase protein [Mycoplasma hyorhinis HUB-1] gi|304309062|gb|ADM21542.1| Predicted GTPase protein [Mycoplasma hyorhinis HUB-1] Length = 433 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 12/166 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKSTL N+ VG KVSI+ TR + V + +DT GI Sbjct: 4 IVALIGKPNVGKSTLFNKLVGKKVSIIHDSPGVTRDRIYSKVEWAGKEFYLIDTGGIEIE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 S+ + + + I+ A+++ +VD E+ + H ++ + K S ++++ NK Sbjct: 64 NKSFQEQIRIQTQIAIEEANLIIFLVDGRVEIDSDDHFVIDLLRKSSKKVLIAANK---- 119 Query: 144 KPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTL 186 LE + + ++ E F +SA G G D+L+ +L Sbjct: 120 -----LEGNKFFDTSIYSLGFEHIFPISAIHGEGVGDLLDETIRSL 160 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 6/138 (4%) Query: 14 DFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 DF ++ +A++G NAGKSTL+N+ SIV+ TTR V + + Sbjct: 161 DFTKEKENEAFRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDSVSSFIKIDKIDF 220 Query: 73 VFLDTPGIFN----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +DT GI A+ ++R +++++ A + +++D+ +EL L + Sbjct: 221 EIIDTAGIIRKSKIAQSVDFYALLR-AFNSLDDAQLSLILIDATQELSHFDARLAGYAFE 279 Query: 129 RSSRLILILNKIDCVKPE 146 + +IL++NK D ++ E Sbjct: 280 KQKPIILVVNKWDLIEKE 297 >gi|315638574|ref|ZP_07893748.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis JV21] gi|315481198|gb|EFU71828.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis JV21] Length = 442 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 1/122 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKS+L+N + + +IV+ TTR + + + +DT GI ++ Sbjct: 217 IAIIGKPNAGKSSLLNALLAYERAIVSPLAGTTRDFIEESLKIGTHLVKIMDTAGIRESE 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + K+ I LS ++ ADI+ + DS RE ++L + ++ +LNK D +K Sbjct: 277 EELEKIGIELSKKSLNEADIILALFDSSREFDEEDKEILNLLKNSEKKVFYLLNKCD-LK 335 Query: 145 PE 146 P+ Sbjct: 336 PQ 337 >gi|189460549|ref|ZP_03009334.1| hypothetical protein BACCOP_01190 [Bacteroides coprocola DSM 17136] gi|189432793|gb|EDV01778.1| hypothetical protein BACCOP_01190 [Bacteroides coprocola DSM 17136] Length = 487 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TNAGKSTL+N + + +IV+ TTR ++ ++ F+DT GI Sbjct: 228 VAIVGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGVTFRFIDTAGIRETT 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKID 141 D+ L I S+ ++ A+IV V+D+ + H L ++I R L+++LNK D Sbjct: 288 DTIESLGIERSFQKLEQANIVLWVIDATCA-EEQYHQLAEKILPRCQGKHLVIVLNKTD 345 >gi|320180048|gb|EFW54990.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella boydii ATCC 9905] Length = 454 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLHNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|311113301|ref|YP_003984523.1| ribosome-associated GTPase EngA [Rothia dentocariosa ATCC 17931] gi|310944795|gb|ADP41089.1| ribosome-associated GTPase EngA [Rothia dentocariosa ATCC 17931] Length = 529 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 6/176 (3%) Query: 14 DFVQDNSR--SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 DF +DN + VA+VG N GKST++NR +G + ++V K TR V + Sbjct: 65 DFDEDNEQFADPVVAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKR 124 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +DT G + + + ++ AD+V LVVD+ + + +++ + + Sbjct: 125 FTLVDTGGWESDARGIDAQVADQAEIAVEQADVVILVVDARVGITASDEQIVRMLRRVKK 184 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +IL+ NKID + LE + + + + F VS G G D L+ L +P Sbjct: 185 PIILMANKID----DSHLEPEIYSLWSLGMGQPFPVSGLHGRGLADALDELLEVMP 236 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 12/186 (6%) Query: 11 EHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 EH + Q + G VAL+G N GKS+L+N+ G++ ++V TTR + ++ Sbjct: 237 EHSQYAQPEAPGGPRRVALIGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDEVIDLG 296 Query: 69 ESQIVFLDTPGIFN----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 F+DT GI AK + +R + ++ +++ +++D L +++ Sbjct: 297 GYPWRFIDTAGIRRRQHMAKGAEFYSSLRTQ-TALERSEVAVVLLDVSEPLSEQDVRIIQ 355 Query: 125 EIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 ++L NK D + ER +LE+ EI L ++ +SA G D ++ Sbjct: 356 TTIDSGRAMVLAFNKWDTLDEERRDMLER-EIDRDLAHVKWAPRVNISAKTGWHKDKLVP 414 Query: 181 YLCSTL 186 L +L Sbjct: 415 ALERSL 420 >gi|170697748|ref|ZP_02888835.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10] gi|170137363|gb|EDT05604.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10] Length = 464 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 15/202 (7%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLAKIREQLAQVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D ++ I +WS I+ AD+V ++DS + Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSEIERADVVLHLLDSRTGMT 320 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +++ ++ +LNK D +E L + +SA +G G D Sbjct: 321 AD-DEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAEGDLTEVH----LSAKRGDGID 375 Query: 177 DVLNYLCSTLPLAPWVYSADQI 198 + L L +A W A+ + Sbjct: 376 MLRTEL---LRIAGWQAGAEGV 394 >gi|120613418|ref|YP_973096.1| tRNA modification GTPase TrmE [Acidovorax citrulli AAC00-1] gi|205829049|sp|A1TWI4|MNME_ACIAC RecName: Full=tRNA modification GTPase mnmE gi|120591882|gb|ABM35322.1| tRNA modification GTPase trmE [Acidovorax citrulli AAC00-1] Length = 482 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 11/192 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 234 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESD 293 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-------ILIL 137 D ++ I +W I AD V + D R + + EIA R +R+ + + Sbjct: 294 DEVERIGIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLARMAPAHVPVVDVW 353 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D + Q +A + +SA G G D + L L +A W + + Sbjct: 354 NKSDRAEGSAAAGQGGVATASASGRAAAVRLSARTGEGLDGLRRVL---LDIAGWQSAPE 410 Query: 197 QISDLPMFHFTA 208 I H A Sbjct: 411 GIYTARARHLEA 422 >gi|313202487|ref|YP_004041145.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688] gi|312441803|gb|ADQ85909.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688] Length = 446 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 15/176 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L+N+ G +V+IVT TTR ++ +V + + +DT G+ + Sbjct: 218 VVLVGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRETE 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID--C 142 D K I +W +++A+ L+VD+ + +L+ + + I + NKID Sbjct: 278 DEVEKQGIARTWRALENANAALLLVDAAHGITETEKSILERLPANLPK-IWVHNKIDLHS 336 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +P + + E+ +SA G G D + +L L +A W + + I Sbjct: 337 EQPRQREHEGEL---------HLYISAKLGLGLDALKAHL---LKIAGWQPAGESI 380 >gi|294140150|ref|YP_003556128.1| GTP-binding protein EngA [Shewanella violacea DSS12] gi|293326619|dbj|BAJ01350.1| GTP-binding protein EngA [Shewanella violacea DSS12] Length = 490 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G S + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRASLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L H + + +R ++ NK+D + Sbjct: 64 EEGIEVHMAEQSLAAIEEADVVLFLTDARAGLTAADHAIADHLRRRDKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + AE + + + + ++A++G G +++ Y LAP+ Sbjct: 124 DADSAC--AEFW--ALGLGEVYQMAASQGRGVTNMIEY-----ALAPYA 163 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL+NR +G + +V TTR + + + + V +DT G+ Sbjct: 202 LAIIGKPNVGKSTLINRILGEERVVVYDSPGTTRDSIYIPMEREGREYVLIDTAGVRRRS 261 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ ++V L++D+ + LL L++ +NK D Sbjct: 262 KVHETVEKFSVIKTLKAIEDCNVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNKWD 321 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + ++E+ +L FI+ + +SA G G Sbjct: 322 GINQEIKDRVKSELDRRLGFIDFARIHFISALHGTGV 358 >gi|253689379|ref|YP_003018569.1| small GTP-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645883|sp|C6DBH0|DER_PECCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|251755957|gb|ACT14033.1| small GTP-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 495 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + K + R +L+ NK D + Sbjct: 64 EDGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKTTVLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 P+ + A+ + + + + + ++A+ G G +L Sbjct: 124 DPD--MVTADFYS--LGMGEVYPIAASHGRGVTSLL 155 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 270 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + E + +L FI+ + +SA G G ++ Y C+T Sbjct: 330 GLSQEVREQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVTEAYACAT 381 >gi|167759571|ref|ZP_02431698.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704] gi|167662798|gb|EDS06928.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704] Length = 471 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N +G +IVT TTR ++ ++ + + +DT GI + KD Sbjct: 228 ILGKPNAGKSSLLNVLLGQDKAIVTEIAGTTRDVLEEHINLQGISLNIMDTAGIRDTKDV 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + S AD++ V+D+ EL N +++L I + S I++LNK D Sbjct: 288 VEKIGVEKAKSHADKADLIIYVIDASTELDENDYEILSLIKGKPS--IILLNKSD 340 >gi|262402852|ref|ZP_06079413.1| GTP-binding protein EngA [Vibrio sp. RC586] gi|262351634|gb|EEZ00767.1| GTP-binding protein EngA [Vibrio sp. RC586] Length = 494 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 7/179 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVVDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L V + + + + IL++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QISDL 201 + AE + +++ + ++A G G +++ + P A + S Q+ DL Sbjct: 124 DAD--AASAEFWQ--LGMDQMYQIAAAHGRGVGALIDRALN--PFAEQMESEQAQLEDL 176 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ K Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRK 267 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLSIDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|190171248|gb|ACE63694.1| ThdF [Escherichia vulneris] Length = 439 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 19/184 (10%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 IA+ ++L ++ NK D L +E+ + LV +SA G G D + N+L Sbjct: 313 IARLPAKLPITVVRNKADLTG--ETLGISEVNGHSLV------RLSAYTGEGIDVLRNHL 364 Query: 183 CSTL 186 ++ Sbjct: 365 KQSM 368 >gi|237738571|ref|ZP_04569052.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 2_1_31] gi|229424054|gb|EEO39101.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 2_1_31] Length = 455 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N + +IVTH TTR I+ +++ ++ +DT GI N D Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKIDC 142 + + S I AD++ V+D RE+ I+D++ + ++I ILNKID Sbjct: 283 IVENIGVEKSKELINSADLILYVIDISREIDEEDFRIYDII-----NTDKVIGILNKIDI 337 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 K L +K I+K +SA G D++ Sbjct: 338 KKEIDL-------SKFPKIDKWIEISALSKIGIDNL 366 >gi|161702952|ref|YP_370756.2| tRNA modification GTPase TrmE [Burkholderia sp. 383] gi|205829162|sp|Q39BQ4|MNME_BURS3 RecName: Full=tRNA modification GTPase mnmE Length = 464 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 14/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D ++ I +WS I+ AD+V ++DS + + + IA R ++ +LNK Sbjct: 288 EDEVERIGIARTWSEIERADVVLHLLDSRNGMTADD----ETIAARFPGGVPVVRVLNKT 343 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D +E L + +SA +G G D + L L +A W A+ + Sbjct: 344 DLTGVAACVEHPAAEGDLTEVH----LSAKRGDGIDMLRAEL---LRIAGWQAGAEGV 394 >gi|319940690|ref|ZP_08015032.1| tRNA modification GTPase mnmE [Sutterella wadsworthensis 3_1_45B] gi|319805841|gb|EFW02608.1| tRNA modification GTPase mnmE [Sutterella wadsworthensis 3_1_45B] Length = 462 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 9/138 (6%) Query: 19 NSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 N+R G VALVGA N GKS+L+N G +V+IVT TTR + + Sbjct: 214 NARRGVVLADGITVALVGAPNVGKSSLLNALAGDEVAIVTEIAGTTRDRIEHWTAFDGIP 273 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKR 129 + +DT G+ D + I + I ADIV +VD+ + + L ++E A+ Sbjct: 274 LRIVDTAGMRETNDIVEQKGIERTLKAISEADIVLHLVDASGRIPDDEALLTRVREYARP 333 Query: 130 SSRLILILNKIDCVKPER 147 + L+++ NKID + ER Sbjct: 334 GTPLLIVANKIDSISLER 351 >gi|78189608|ref|YP_379946.1| GTP-binding protein EngA [Chlorobium chlorochromatii CaD3] gi|123743429|sp|Q3AQ22|DER_CHLCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78171807|gb|ABB28903.1| Small GTP-binding protein domain [Chlorobium chlorochromatii CaD3] Length = 443 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 82/173 (47%), Gaps = 14/173 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +ALVG N GKSTL NR + + +IV T V R I G K Q +DT G Sbjct: 4 LLALVGRPNVGKSTLFNRILRQRSAIVDPTPGVTRDRHIAEGEWQGK--QFKLMDTGGYN 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRS---SRLILIL 137 D K M+ + + AD + + D+ L + DL L I +RS +L ++ Sbjct: 62 TDGDVLSKAMLEQTLHALADADSILFITDARAGL--SYEDLELARILQRSFQHKQLFFVV 119 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK++ P+ ++E AE K F F VSA G G D+L+ + LP AP Sbjct: 120 NKVES--PQLVIE-AESFIKTGFTTPYF-VSAKDGSGVADLLDDVLEALPEAP 168 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/158 (22%), Positives = 77/158 (48%), Gaps = 13/158 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A+VG N GKS+ VN +G IV++ TTR + + + + + +DT G+ Sbjct: 180 LAIVGRPNVGKSSFVNALLGTNRHIVSNIPGTTRDAIDSRLMRNQQEYLLIDTAGLRKRT 239 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +A Y+ + S I+ ++ +++D+ + ++ ++ +R ++L++NK Sbjct: 240 KIDAGIEYYSSL--RSERAIERCEVAIVMLDAEQGIEKQDLKIINMAIERKKGVLLLVNK 297 Query: 140 IDCVKPE-----RLLEQAEIA-NKLVFIEKTFMVSATK 171 D ++ + R EQ +A L ++ F+ + TK Sbjct: 298 WDLIEKDSKTSIRYEEQLRMAMGNLSYVPVLFVSAMTK 335 >gi|166032899|ref|ZP_02235728.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC 27755] gi|166027256|gb|EDR46013.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC 27755] Length = 470 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N +G + +IVT TTR ++ ++ + + +DT GI + +D Sbjct: 227 IVGKPNAGKSSLLNVLLGEERAIVTEIAGTTRDVLEEHMNLQGISLNIVDTAGIRDTEDV 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + K AD++ V+D+ L N D+++ I R + I++LNK D Sbjct: 287 VEKIGVDRAKENAKDADLIMYVIDASAPLDENDDDIMRMIYGR--KAIILLNKAD 339 >gi|297539957|ref|YP_003675726.1| tRNA modification GTPase TrmE [Methylotenera sp. 301] gi|297259304|gb|ADI31149.1| tRNA modification GTPase TrmE [Methylotenera sp. 301] Length = 449 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 12/215 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L+N+ G +++IVT TTR ++ + + +DT G+ Sbjct: 221 VVLVGQPNVGKSSLMNQLAGEEIAIVTSIAGTTRDTIKNAIQINGVPLHVIDTAGLRETD 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K I +W + A+I L+VD+ + +L + + R I + NKID Sbjct: 281 DEVEKFGIERTWRAAQSANIALLLVDAAHGITETEKSILARLPQE-IRKIWVHNKIDVAN 339 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 L+ + + A + +SA G G D + ++L L LA + +++ + Sbjct: 340 EPALVAEKDGAMHI-------YLSAKTGAGLDLLKSHL---LKLAGYENNSEGVFMARAR 389 Query: 205 HFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD 239 H A +++ ++ L+ E S+ ++ E+ +D Sbjct: 390 HLEA-LSQVQIHLNFASEQINSAELIAEELRISQD 423 >gi|237752638|ref|ZP_04583118.1| GTP-binding protein engA [Helicobacter winghamensis ATCC BAA-430] gi|229376127|gb|EEO26218.1| GTP-binding protein engA [Helicobacter winghamensis ATCC BAA-430] Length = 462 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 2/139 (1%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG NAGKS+L NRF +++I + TTR + + + ++ + DT G+ + Sbjct: 6 GSIAIVGRPNAGKSSLFNRFCKQRIAITSEIAGTTRDVKKARILLQDLPFLLFDTGGL-D 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ + + + S T + AD++ +VD + ++ + K++ + L++NKID Sbjct: 65 DKDALFQSVSKHSQRTGESADLILYLVDGKTPPEQADKEIFYSLEKKNPNIFLVINKIDN 124 Query: 143 VK-PERLLEQAEIANKLVF 160 K + E E K VF Sbjct: 125 DKEKQNAWEFMEFGAKNVF 143 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 17/179 (9%) Query: 9 FNEH--KDFVQDNSRSGC-----VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 FN+ +DF+++ + + ++G N GKS+L+N + + S+V++ TT V Sbjct: 177 FNDESLEDFLENETEKTINELINIGIIGRVNVGKSSLLNALLKEERSVVSNVAGTTIDPV 236 Query: 62 RGIVSEKESQIVFLDTPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELK 116 I ++ F+DT GI + K + + + ++ DI LV+D+ EL Sbjct: 237 DEIGEINGRRVNFVDTAGIRRRGKIEGLEKFALNRTRTILERTDIAILVLDASVPFVELD 296 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPE--RLLEQAEIANKLVFIEKTFMVSATKGH 173 I L+ E +I++ NK D + ++E ++ K + +SA G Sbjct: 297 EKIAGLIDEF---KLGVIVVFNKWDIAHKDFKGIMEDFKLRFKFLEYAPILTISAKNGR 352 >gi|307267081|ref|ZP_07548594.1| ribosome-associated GTPase EngA [Thermoanaerobacter wiegelii Rt8.B1] gi|306917912|gb|EFN48173.1| ribosome-associated GTPase EngA [Thermoanaerobacter wiegelii Rt8.B1] Length = 439 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 10/181 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 V++VG N GKSTL N+ +G ++SIV K TR + G + + + +DT G+ Sbjct: 3 GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62 Query: 81 FNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 NA+D + K+ +++ + I +D++ +VD+ L ++ + + +IL+ NK Sbjct: 63 PNAEDILFSKVRLQVE-AAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNK 121 Query: 140 IDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D K P + + + +SA+ G G ++L+ + LP Y+ + Sbjct: 122 VDSFKEMPPTYYDFFSLG-----LGNPIPISASNGLGIGELLDEVVKKLPQEELEYTEET 176 Query: 198 I 198 I Sbjct: 177 I 177 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+LVN+ +G + IV++ TTR + S+ V +DT GI Sbjct: 179 IAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + + + I+ +DI L++D+ + + +I+++NK D Sbjct: 239 RISESIERYSVLRALAAIERSDICLLMIDATEGPTEQDTKIAGYAFENGKGIIIVVNKWD 298 Query: 142 CVK 144 +K Sbjct: 299 AIK 301 >gi|254000528|ref|YP_003052591.1| tRNA modification GTPase TrmE [Methylovorus sp. SIP3-4] gi|253987207|gb|ACT52064.1| tRNA modification GTPase TrmE [Methylovorus sp. SIP3-4] Length = 446 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 15/176 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L+N+ G +V+IVT TTR ++ +V + + +DT G+ + Sbjct: 218 VVLVGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRETE 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID--C 142 D K I +W +++A+ L+VD+ + +L+ + + I + NKID Sbjct: 278 DEVEKQGIARTWRALENANAALLLVDAAHGITETEKSILERLPANLPK-IWVHNKIDLHS 336 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 +P + + E+ +SA G G D + +L L +A W + + I Sbjct: 337 EQPRQREHEGEL---------HLYISAKLGLGLDALKAHL---LKIAGWQPAGESI 380 >gi|85703427|ref|ZP_01034531.1| GTP-binding protein EngA [Roseovarius sp. 217] gi|85672355|gb|EAQ27212.1| GTP-binding protein EngA [Roseovarius sp. 217] Length = 487 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V ++ TR + G + + +DT G+ A Sbjct: 4 SLAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGAARLGDLRFTVIDTAGLEEA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D S M +L+ + AD+ ++D+ + L + + KRS+ +IL NK + Sbjct: 64 TDESLQGRMRKLTERAVDMADVCLFLIDARAGVTPTDEILAEILRKRSAHVILAANKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + I + + + +SA G G +D+ + L +PL+ Sbjct: 124 SA----ADAGVIEAWGLGLGEPIRLSAEHGEGLNDLYSQL---MPLS 163 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 12/167 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R VA+VG NAGKSTL+N+ +G + + + TR + + + DT G Sbjct: 198 ARPMQVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLQIDWDGLPVRIFDTAG 257 Query: 80 IFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLIL 135 + +D KL + +K A++V +++D+ + DL + ++A+R R ++ Sbjct: 258 MRKKARIQDKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVV 315 Query: 136 I-LNKIDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD 176 + +NK D K +++ E E +L+ + VSA G G D Sbjct: 316 VAINKWDMEPDKSDKIRELREAFERLLPQLRGAPLVTVSAKTGKGLD 362 >gi|241764499|ref|ZP_04762520.1| small GTP-binding protein [Acidovorax delafieldii 2AN] gi|241366083|gb|EER60680.1| small GTP-binding protein [Acidovorax delafieldii 2AN] Length = 462 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 8/179 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR ++ +IV TR G + + + + +DT G + Sbjct: 19 VIALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKQGKHEYIVIDTGGFEPD 78 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A ++ M + + + AD+V VVD+ + HD+ + + +L+ NK Sbjct: 79 ASSGIYREMAKQTQQAVAEADVVIFVVDARAGVSAQDHDIANYLRRLGKPCVLVANKA-- 136 Query: 143 VKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 E +L+ ++A + + + + VSA G G +++ L L P A+Q +D Sbjct: 137 ---EGMLQGGQLAEFYELGLGEVYPVSAAHGQGIRGLVDLALEPLHL-PEPDDAEQAAD 191 Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 6/156 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTL+N ++G + + TTR + + +DT G+ Sbjct: 197 LAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQRFELVDTAGLRRKG 256 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L++D+ + + + I + ++L +NK D Sbjct: 257 KVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAVNKWD 316 Query: 142 CVKP-ERLLEQAEIANKLVFIEKTFM--VSATKGHG 174 V +R L + I +L F++ + +SA K G Sbjct: 317 AVDEYQRQLLERSIETRLAFLKFAALHFISAKKRQG 352 >gi|294138797|ref|YP_003554775.1| tRNA modification GTPase TrmE [Shewanella violacea DSS12] gi|293325266|dbj|BAI99996.1| tRNA modification GTPase TrmE [Shewanella violacea DSS12] Length = 453 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 VVIAGRPNAGKSSLLNALAGKESAIVTEVAGTTRDVLREHIHIDGMPLHIIDTAGLRDTS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-SSRL--ILILNKID 141 D+ K+ I +W+ I+ AD V +VD V+ H++ + R S+L ++ NK D Sbjct: 278 DTVEKIGIERAWAEIETADQVLFMVDGTTTDAVDPHEIWPDFIDRLPSKLGITVVRNKAD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 L Q + +SA G G D V +L S + Sbjct: 338 LTGESLELTQDH-------GHPVYRISAKTGLGIDSVKQHLKSLM 375 >gi|18044650|gb|AAH19728.1| Eral1 protein [Mus musculus] Length = 174 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%) Query: 160 FIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHL 219 + ++ FM+SA + + YL + PW + + ++ A REKL +L Sbjct: 38 YFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLTSQTPEEICANKIREKLLEYL 97 Query: 220 HKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIA 279 +E+PY T WEE G ++I+Q + V + S +I++G+ G I I+ E +++ Sbjct: 98 PEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGLLISQIAQEVGRDLM 157 Query: 280 EILEQPVHLILFVKVQK 296 +I V + L VK+ K Sbjct: 158 DIFHCDVLIRLSVKLLK 174 >gi|149193806|ref|ZP_01870904.1| tRNA modification GTPase TrmE [Caminibacter mediatlanticus TB-2] gi|149135759|gb|EDM24237.1| tRNA modification GTPase TrmE [Caminibacter mediatlanticus TB-2] Length = 443 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 5/119 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+++N+ + + +IV+ TTR + + I +DT GI AK Sbjct: 216 VAIVGKPNVGKSSILNKLLNKQRAIVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRAAK 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILNKID 141 D K+ + S +IK ADIV V D K + I DL+K + K +I+++NK+D Sbjct: 276 DEIEKIGVERSKESIKKADIVLAVFDGSEFNKEDEEILDLIKNLDK---DVIIVINKVD 331 >gi|254487934|ref|ZP_05101139.1| GTP-binding protein [Roseobacter sp. GAI101] gi|214044803|gb|EEB85441.1| GTP-binding protein [Roseobacter sp. GAI101] Length = 491 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +A+VG N GKSTL NR VG K+++V + TR + G + + +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLEEV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE--IAKRSSRLILILNKI 140 DS M RL+ + ADI ++D+ + V DL+ + K+S+ +IL NK Sbjct: 64 TDDSLQGRMRRLTERAVDMADICLFMIDAR--VGVTPSDLVFADILRKKSAHVILAANKG 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + R + + + + + +SA G G +D+ +L +P+A Sbjct: 122 EG----RAADAGVLEAYSLGLGEPIRMSAEHGEGLNDLYTHL---MPIA 163 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 36/204 (17%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V N++ VA+VG NAGKSTL+N+ +G + + TR + + + Sbjct: 197 VPTNAKPLQVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLRTVWEGVPMRIF 256 Query: 76 DTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSS 131 DT G+ ++ KL + +K A++V +++D+ E+ DL + ++A+R Sbjct: 257 DTAGMRKKAKIQEKLEKLSVSDGLRAVKFAEVVVVLLDA--EIPFEQQDLRIADLAEREG 314 Query: 132 RLILI-LNKIDCVKP------------ERLLEQAEIANKLVFIEKTFMVSATKGHGCD-- 176 R +++ +NK D ERLL Q + A VSA G G D Sbjct: 315 RAVVVAVNKWDLETDKQGKLKDLRESFERLLPQLKGA-------PLVTVSAKTGRGLDRL 367 Query: 177 --------DVLNYLCSTLPLAPWV 192 DV N +T L W+ Sbjct: 368 HNAIMRAYDVWNRRVTTAQLNRWL 391 >gi|77166532|ref|YP_345057.1| tRNA modification GTPase TrmE [Nitrosococcus oceani ATCC 19707] gi|123593187|sp|Q3J6L9|MNME_NITOC RecName: Full=tRNA modification GTPase mnmE gi|76884846|gb|ABA59527.1| tRNA modification GTPase trmE [Nitrosococcus oceani ATCC 19707] Length = 458 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L NR G + +IVT TTR ++R ++ I DT G+ N+K Sbjct: 227 VVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLRENITIDGLPIHLSDTAGLHNSK 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + +R + + HAD V LV D L +L E+ + LI NKID Sbjct: 287 DTIEQEGMRRTREELIHADHVLLVADDQSGLTEAEQAILDELPDDVT-YTLIFNKID 342 >gi|306825270|ref|ZP_07458612.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432706|gb|EFM35680.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 457 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRDTDDIVEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ ++ I Sbjct: 339 TDL--PET-IETSELPEDVIRI 357 >gi|251800245|ref|YP_003014976.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2] gi|247547871|gb|ACT04890.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2] Length = 459 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 7/157 (4%) Query: 21 RSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + A+VG N GKS+L+N +IVT TTR ++ V+ + LDT G Sbjct: 219 REGIMTAIVGRPNVGKSSLLNMLAQENKAIVTDIPGTTRDVIEEYVTLNHIPLRLLDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + ++ AD++ V++++ + + LL+++ R +LILI+NK Sbjct: 279 IRETNDVVERIGVERSHNALEEADLILFVLNNNEPIHEDDRALLEKVKDR--QLILIINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D E LE AEI L+ E+ +S + G D Sbjct: 337 SDL---ESKLEMAEI-EALIDEERIVRMSVREEDGLD 369 >gi|116670099|ref|YP_831032.1| GTP-binding protein EngA [Arthrobacter sp. FB24] gi|116610208|gb|ABK02932.1| small GTP-binding protein [Arthrobacter sp. FB24] Length = 516 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR +G + ++V TR V + +DT G + Sbjct: 80 VLAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSATWNGRNFTVVDTGGWEHD 139 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + ++ AD V VVDS ++K + K +I++ NK+D Sbjct: 140 ARGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEAVVKMLRKSKKPVIMVANKVDD- 198 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++A+ A L F E + VSA G G D+L+++ TLP Sbjct: 199 ----FAQEADSATLWGLGFGEP-YPVSALHGRGVADLLDHVMDTLP 239 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 24/142 (16%) Query: 21 RSGC---VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 RSG +AL+G N GKS+L+N+ G++ +V + TTR V + F+DT Sbjct: 249 RSGGPRRIALIGRPNVGKSSLLNKLAGSERVVVDNTAGTTRDPVDEFIELGGRTWRFVDT 308 Query: 78 PGI------FNAKDSYHKLMIRLSWSTIKHAD--IVCLVVD---SHRELKVNIHDLLKEI 126 GI D Y L + S ++ A+ +V L VD S +++++ ++ Sbjct: 309 AGIRRRQHMAQGADFYASLRTQ---SALEKAEVAVVLLAVDEVLSEQDVRI------LQL 359 Query: 127 AKRSSR-LILILNKIDCVKPER 147 A S R L+L NK D + ER Sbjct: 360 AIESGRALVLAFNKWDLLDDER 381 >gi|326391582|ref|ZP_08213112.1| ribosome-associated GTPase EngA [Thermoanaerobacter ethanolicus JW 200] gi|325992364|gb|EGD50826.1| ribosome-associated GTPase EngA [Thermoanaerobacter ethanolicus JW 200] Length = 439 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 10/181 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 V++VG N GKSTL N+ +G ++SIV K TR + G + + + +DT G+ Sbjct: 3 GAIVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62 Query: 81 FNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 NA+D + K+ +++ + I +D++ +VD+ L ++ + + +IL+ NK Sbjct: 63 PNAEDILFSKVRLQVE-AAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNK 121 Query: 140 IDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D K P + + + +SA+ G G ++L+ + LP Y+ + Sbjct: 122 VDSFKEMPPTYYDFFSLG-----LGNPIPISASNGLGIGELLDEVVKKLPQEELEYTEET 176 Query: 198 I 198 I Sbjct: 177 I 177 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+LVN+ +G + IV++ TTR + S+ V +DT GI Sbjct: 179 IAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + + + I+ +DI L++D+ + + +I+++NK D Sbjct: 239 RISESIERYSVLRALAAIERSDICLLMIDATEGPTEQDTKIAGYAFENGKGIIIVVNKWD 298 Query: 142 CVK 144 +K Sbjct: 299 AIK 301 >gi|258509933|ref|YP_003172684.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus GG] gi|257149860|emb|CAR88833.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus GG] gi|259651193|dbj|BAI43355.1| tRNA modification GTPase [Lactobacillus rhamnosus GG] Length = 462 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATAIVGRPNVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S I AD++ LV+D L LL A + + I++LNK Sbjct: 282 IHDTTDKVEKIGVERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADK--KRIIVLNK 339 Query: 140 IDCVKPERL 148 D P RL Sbjct: 340 QDL--PARL 346 >gi|199598240|ref|ZP_03211661.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001] gi|199590843|gb|EDY98928.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001] Length = 462 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATAIVGRPNVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S I AD++ LV+D L LL A + + I++LNK Sbjct: 282 IHDTTDKVEKIGVERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADK--KRIIVLNK 339 Query: 140 IDCVKPERL 148 D P RL Sbjct: 340 QDL--PARL 346 >gi|312884308|ref|ZP_07744017.1| GTP-binding protein EngA [Vibrio caribbenthicus ATCC BAA-2122] gi|309368081|gb|EFP95624.1| GTP-binding protein EngA [Vibrio caribbenthicus ATCC BAA-2122] Length = 495 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 14/186 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR ++ ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ M S + I AD+V +VD L + I + L+++AK S +L++NK+ Sbjct: 64 EEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPADIAISNHLRKLAKPS---MLVVNKV 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ--I 198 D + + A + ++ + ++A G G +++ + P A + + +Q I Sbjct: 121 DGIDA----DAASADFWQLGVDDMYQIAAAHGRGVGALIDRALN--PFAEEMIAQEQGVI 174 Query: 199 SDLPMF 204 DL F Sbjct: 175 EDLTDF 180 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ K Sbjct: 209 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRK 268 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL ++L +NK D Sbjct: 269 RINETVEKFSVVKTLKAIEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 328 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 329 GLDMDVKEHVKKELDRRLGFVDFARLHFISALHGTGV 365 >gi|260912765|ref|ZP_05919251.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325] gi|260633143|gb|EEX51308.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325] Length = 476 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 241 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAT 300 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +WS I+ AD + L++DS + N+ ++ E +AK S++ ++ NK D Sbjct: 301 DEVERIGIVRAWSEIEQADRILLMLDSTEQDNQNLDNVWPEFLAKLPSQIPVTIVRNKAD 360 >gi|225377579|ref|ZP_03754800.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM 16841] gi|225210555|gb|EEG92909.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM 16841] Length = 457 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 7/155 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +VG NAGKS+L+N VG + +IVT TTR ++ ++ + +DT GI + Sbjct: 222 STVIVGKPNAGKSSLLNFLVGEEKAIVTDIAGTTRDVLEEQINLNGILLNIIDTAGIRDT 281 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D K+ + + + +AD+V VVD+ L N H++++ + R + I++LNK D + Sbjct: 282 EDVVEKIGVERAKKYLNNADLVIYVVDTSTALDENDHEIMELLKDRHA--IVLLNKSD-L 338 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 P +E +I L +K +SA + G DD+ Sbjct: 339 SPVTTVE--DIRKHLD--KKMISISAKEQTGMDDL 369 >gi|254449216|ref|ZP_05062665.1| GTP-binding protein EngA [gamma proteobacterium HTCC5015] gi|198261193|gb|EDY85489.1| GTP-binding protein EngA [gamma proteobacterium HTCC5015] Length = 472 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 13/197 (6%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 EH D V+ +A+VG N GKSTL+NR +G + TTR + + Sbjct: 174 EHDDSVR-------IAVVGRPNVGKSTLINRILGETRVLAYDAPGTTRDSIFVPFESELG 226 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +DT G+ ++ K + + I A +V V+D+ R + LL+E+ Sbjct: 227 RYTLIDTAGVRKRGKIHETVEKFSVVKALQAIAEAHVVLQVIDARRGVAEQDLTLLREVL 286 Query: 128 KRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCS 184 + S L+ ++NK D + P ER + +++ +L FI + +SA G G +L + Sbjct: 287 HQGSALVFVINKWDGLSPEERDFIKEDLSRRLNFISFPEFHFISALHGTGVGHILEAVNR 346 Query: 185 TLPLAPWVYSADQISDL 201 A Q++D+ Sbjct: 347 AYDSAMIKLGTKQLTDV 363 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL N + ++V TR G + V +DT G+ Sbjct: 4 VIAIVGRPNVGKSTLFNCLTRTRDALVADMPGLTRDRKYGNGKLGDRAYVVVDTGGLSTD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D LM + + ADI+ +VDS + ++ +EI K+ + L+ NK+D Sbjct: 64 QDEMDNLMASQAQQAMDEADILLFMVDSREGINPIDENIAREIRKKGKPVFLVANKMDGC 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +A+ + + + ++A+ G ++ L TLP Sbjct: 124 DPDVI--RADFYQ--LGLGEPLTIAASHNRGVHSLIETLFETLP 163 >gi|270292694|ref|ZP_06198905.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143] gi|270278673|gb|EFA24519.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143] Length = 475 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 239 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 298 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ +L LL EI++ ++R+IL LNK Sbjct: 299 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEQLTAQDRQLL-EISQDTNRIIL-LNK 356 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ ++ I Sbjct: 357 TDL--PE-AIETSELPEDVIRI 375 >gi|315230562|ref|YP_004070998.1| GTP-binding Era-like protein [Thermococcus barophilus MP] gi|315183590|gb|ADT83775.1| GTP-binding Era-like protein [Thermococcus barophilus MP] Length = 188 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 25/180 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE------------KESQI 72 VA++GA N GKSTL+N +G +VS TT+SI+R + + Sbjct: 4 VAIIGAENVGKSTLMNALLGKRVSETAEIPGTTKSIIRKTFGKIKIPKTMKNPFGGADEF 63 Query: 73 VFLDTPGIFNAKDSYHKLMI-----RLSWSTIKHADIVCLVVDS----HRELKVNIHDLL 123 V +DT G+F+ K + ++ + I ADI+ ++D+ HR ++ +H +L Sbjct: 64 VLIDTAGLFDPKYEFRGKVLSEEKFKEILDEITSADIIIHMIDAQYGLHRGME-KLHHIL 122 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 K + +I+++NKID V ER+ E +I K + ++ ++S G +D+L L Sbjct: 123 K--FRYEKPIIVVINKIDLVPRERVEELRQIVKKRLE-QEPILLSLVTYEGFNDLLKALV 179 >gi|312139844|ref|YP_004007180.1| gtpase [Rhodococcus equi 103S] gi|325674279|ref|ZP_08153968.1| ribosome-associated GTPase EngA [Rhodococcus equi ATCC 33707] gi|311889183|emb|CBH48497.1| GTPase [Rhodococcus equi 103S] gi|325554959|gb|EGD24632.1| ribosome-associated GTPase EngA [Rhodococcus equi ATCC 33707] Length = 481 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + + + DT G Sbjct: 44 TLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYDANWAGRRFMVQDTGGWEPD 103 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + R + + AD + LVVD+ ++ + + + +IL+ NK+D Sbjct: 104 AKGLQQSVARQAELAMNTADAILLVVDAVVGATATDEAAVRVLRRSKTPVILVANKVDDA 163 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E E A + + + + + MVSAT G G D+L+ + LP P Sbjct: 164 RTE--AEAAALWS--LGLGEPHMVSATHGRGTGDLLDEVLRVLPETP 206 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 6/168 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V +V F+DT G+ Sbjct: 218 VALVGKPNVGKSSLLNKLSGDERSVVHDVAGTTVDPVDSLVELGGKVWKFVDTAGLRKKV 277 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L + S I+ A++ L++D+ + + +L +A L+L NK D Sbjct: 278 SHASGHEFYASLRTKSAIEAAEVAILLIDASKPITEQDLRVLSMVADTGRALVLAFNKWD 337 Query: 142 CVKPE-RLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTL 186 V + RL+ + EI +LV + + +SA G ++ L + L Sbjct: 338 LVDEDRRLMLEKEIDRELVRVPWAQRVNISAHTGRAVQKLVPALDTAL 385 >gi|227810188|gb|ACP41241.1| tRNA modification GTPase [Actinobacillus minor] Length = 416 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 194 REGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 253 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + +A D ++ I+ +W I AD V L++DS + K + L ++ + + + Sbjct: 254 LRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKTEWAEFLAKLPQNIP-VTV 312 Query: 136 ILNKIDCVKPERLLEQ 151 I NK+D LEQ Sbjct: 313 IRNKVDLSGESEGLEQ 328 >gi|225858807|ref|YP_002740317.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585] gi|225720545|gb|ACO16399.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585] Length = 457 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D+ ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDTVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|167582764|ref|ZP_02375638.1| tRNA modification GTPase TrmE [Burkholderia thailandensis TXDOH] Length = 467 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 20/206 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ L Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDARSGLG 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKG 172 + + IA R ++ +LNK D + P + A + E +SA +G Sbjct: 321 PDD----EAIAARFPAGVPVVRVLNKTDLTEAPASVARVGGGAERADLCE--VRLSAKRG 374 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 375 DGIDLLRGEL---LRIAGWQAGAESV 397 >gi|14195296|sp|Q9RL97|MNME_STRAG RecName: Full=tRNA modification GTPase mnmE gi|6448626|emb|CAB61255.1| thiophene degradation protein F [Streptococcus agalactiae] Length = 462 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A +G N GKS L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 226 REGLSTAKIGRPNVGKSQLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAG 285 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV++S L + LL E++K S+R++L LNK Sbjct: 286 IRDTDDIVEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLL-ELSKESNRIVL-LNK 343 Query: 140 IDCVKPERL 148 D P+++ Sbjct: 344 TDL--PQKI 350 >gi|309804827|ref|ZP_07698889.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c] gi|309809783|ref|ZP_07703637.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D] gi|308165766|gb|EFO67987.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c] gi|308169962|gb|EFO72001.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D] Length = 461 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 3/124 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG A+VG N GKS+L+N + +IVT+ TTR + VS K + +DT G Sbjct: 222 RSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L+++S EL LLK + + I+ILNK Sbjct: 282 IRQTDDIVEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLLK--LTQDKKRIVILNK 339 Query: 140 IDCV 143 D V Sbjct: 340 ADQV 343 >gi|154490812|ref|ZP_02030753.1| hypothetical protein PARMER_00729 [Parabacteroides merdae ATCC 43184] gi|154088560|gb|EDN87604.1| hypothetical protein PARMER_00729 [Parabacteroides merdae ATCC 43184] Length = 460 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 8/136 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETH 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNKIDC 142 D+ + I ++ + ADIV ++D+ + + I L ++I RS +LIL+ NK D Sbjct: 284 DAIESIGIERTFQKLDQADIVLWMIDA-ADASLQIAQLSEKILPRSEGKQLILVFNKADL 342 Query: 143 V-----KPERLLEQAE 153 + KP L E + Sbjct: 343 LTDRQFKPTDLPENVQ 358 >gi|146312646|ref|YP_001177720.1| GTP-binding protein EngA [Enterobacter sp. 638] gi|166920100|sp|A4WD89|DER_ENT38 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145319522|gb|ABP61669.1| small GTP-binding protein [Enterobacter sp. 638] Length = 490 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADIVLFMVDARAGLMPADTAIAKHLRSREKPTFLVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +QA + + + + ++A+ G G +L + L PWV Sbjct: 124 D----ADQAVADFWALGLGEIYPIAASHGRGVTSLLETV-----LMPWV 163 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRG 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDVVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + + + E+ + +L FI+ + +SA G G ++ Sbjct: 325 GLSNDVREQVKEMLDFRLGFIDFARIHFISALHGSGVGNLF 365 >gi|83655357|gb|ABC39420.1| tRNA modification GTPase TrmE [Burkholderia thailandensis E264] Length = 540 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 20/206 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 274 GKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 333 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ L Sbjct: 334 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDARSGLG 393 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKG 172 + + IA R ++ +LNK D + P + A + E +SA +G Sbjct: 394 PDD----EAIAARFPAGVPVVRVLNKTDLTEAPASVARVGSGAERADLCE--VRLSAKRG 447 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 448 DGIDLLRGEL---LRIAGWQAGAESV 470 >gi|71065252|ref|YP_263979.1| GTP-binding protein EngA [Psychrobacter arcticus 273-4] gi|123649239|sp|Q4FTW3|DER_PSYA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71038237|gb|AAZ18545.1| putative GTP-binding protein, HSR1-related [Psychrobacter arcticus 273-4] Length = 473 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKSTL N+F ++ ++V TR G + ++ + +DT GI A Sbjct: 6 VVALIGRPNVGKSTLFNQFTKSRQALVADLSGLTRDRQYGDATYEDKAFIVVDTGGIGEA 65 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + M S++ I ADI+ VVD+ + ++ K + + ++ NK+ Sbjct: 66 DDGRGDIDDYMSEQSYTAIHEADIIVFVVDARAGMIGADAEIGKFLHTLGKPVYVVANKV 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D V + A + + + + ++A+ G G ++L L + +P Sbjct: 126 DGVH-----DSAPAEFYALGLGEPYPMAASHGRGVGNLLEVLTADMP 167 Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 6/160 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTLVNR +G +V TTR + V +DT G+ Sbjct: 180 LAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPYKRDGKDYVLIDTAGVRRRG 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ +++ +V+D+H + ++ L++ +NK D Sbjct: 240 KIDEKVEKFSVIKTLQAIEDSNVTVIVIDAHEGIVDQDLHMIGYALDAGRALVVAINKWD 299 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 + ++ + E+ + FI K +SA G G ++ Sbjct: 300 GLTADQKNYIKIEMDRRFNFIPYVKVHQISALHGTGVGNL 339 >gi|116511562|ref|YP_808778.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris SK11] gi|125624594|ref|YP_001033077.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris MG1363] gi|123320527|sp|Q030L6|DER_LACLS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166198724|sp|A2RM49|DER_LACLM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116107216|gb|ABJ72356.1| Predicted GTPase [Lactococcus lactis subsp. cremoris SK11] gi|124493402|emb|CAL98376.1| putative phosphoglycerate dehydrogenase [Lactococcus lactis subsp. cremoris MG1363] gi|300071385|gb|ADJ60785.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris NZ9000] Length = 436 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VVD + + + + I R+ + +ILI+NK+D Sbjct: 65 DEPFMTEIRAQAEIAMTEADVIIAVVDGETGI-TDADEAVANILYRTDKPVILIVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PER +E + + + + + VSA G G DVL+ + LP Sbjct: 123 -NPERRMEIFDFYS--LGLGDPYPVSAVHGIGTGDVLDAIVQNLP 164 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR +I V ++ + V +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +DIV +V+++ RE + I E K +++++N Sbjct: 238 KIYENTEKYSVMRAMRAIDRSDIVLMVINAEEGIREYDMRIAGFAHEAGK---GILIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|329118565|ref|ZP_08247269.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC BAA-1200] gi|327465300|gb|EGF11581.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC BAA-1200] Length = 454 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G ++IVT TTR VR ++ + DT G+ + Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHITDTAGLRDTD 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K+ I S + AD+ +++D L D+L + + I + NKID Sbjct: 280 DTVEKIGIERSGKALAQADVALILIDPAEGLNQKTRDILAALPGNLKK-IEVHNKID 335 >gi|148826352|ref|YP_001291105.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE] gi|166200480|sp|A5UD71|MNME_HAEIE RecName: Full=tRNA modification GTPase mnmE gi|148716512|gb|ABQ98722.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE] Length = 452 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|145640677|ref|ZP_01796260.1| tRNA modification GTPase [Haemophilus influenzae R3021] gi|145274603|gb|EDK14466.1| tRNA modification GTPase [Haemophilus influenzae 22.4-21] Length = 452 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|327460276|gb|EGF06613.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1057] Length = 457 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 9/132 (6%) Query: 18 DNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D +R G A++G N GKS+L+N + +IVT TTR ++ V+ K Sbjct: 212 DTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGV 271 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + +DT GI D ++ + S ++ AD+V LV++++ L LL EI+K S Sbjct: 272 PLKLIDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNANEPLTDQDRQLL-EISKDS 330 Query: 131 SRLILILNKIDC 142 +R+IL LNK D Sbjct: 331 NRIIL-LNKTDL 341 >gi|296117980|ref|ZP_06836563.1| ribosome-associated GTPase EngA [Corynebacterium ammoniagenes DSM 20306] gi|295969211|gb|EFG82453.1| ribosome-associated GTPase EngA [Corynebacterium ammoniagenes DSM 20306] Length = 539 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR + I + DT G Sbjct: 105 TVAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYIGDWNGQRFFVQDTGGWDPN 164 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + ++ AD++ VVD+ KV I + +A++ R +IL+ NK Sbjct: 165 AKGIHGAIARQAEVAMETADVIVFVVDT----KVGITETDSVMARKLQRSDVPVILVANK 220 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D + AE + + + VSA G G DVL+ + P P Sbjct: 221 FDS--DSMYADMAEF--YALGLGDPWPVSAQHGRGGADVLDEVLKLFPEQP 267 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ G + S+V + TT V +V + F+DT G + Sbjct: 279 VALVGKPNVGKSSLLNKITGQERSVVDNVSGTTVDPVDSLVQLDKQLWRFVDTAGLRKKV 338 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ +++D+ +E+ +L + + L++ NK Sbjct: 339 KNAQGHEYYASLRTR-GVIDAAEVCVMLIDASQEISEQDQRVLNMVLEAGKALVIAFNKW 397 Query: 141 DCVKPER 147 D + +R Sbjct: 398 DLMDEDR 404 >gi|257455160|ref|ZP_05620398.1| tRNA modification GTPase TrmE [Enhydrobacter aerosaccus SK60] gi|257447493|gb|EEV22498.1| tRNA modification GTPase TrmE [Enhydrobacter aerosaccus SK60] Length = 463 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 18/179 (10%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+NR G + +IVT TTR I++ + + DT G Sbjct: 221 RDGVSVVIAGRPNAGKSSLLNRLAGQERAIVTDIAGTTRDILQETIVLNGLTLNLTDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE---LKVNIHDLLKEIAKRSSRLILI 136 + D + I + I AD++ +V D+HRE L++ +L + +S +++I Sbjct: 281 LRQTDDIVEQAGIERARQAITQADLLLMVYDAHREHEPLRLAT-ELFGSLPNANS-ILMI 338 Query: 137 LNKIDCVK-----PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID P++ Q +I + + VS G ++++N +C + P Sbjct: 339 ANKIDLSDNHQNLPKQFSSQEQIYHPV-------YVSCKYDTGLEELVNQICDKVGFHP 390 >gi|254436182|ref|ZP_05049689.1| tRNA modification GTPase TrmE [Nitrosococcus oceani AFC27] gi|207089293|gb|EDZ66565.1| tRNA modification GTPase TrmE [Nitrosococcus oceani AFC27] Length = 431 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L NR G + +IVT TTR ++R ++ I DT G+ N+K Sbjct: 200 VVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLRENITIDGLPIHLSDTAGLHNSK 259 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + +R + + HAD V LV D L +L E+ + LI NKID Sbjct: 260 DTIEQEGMRRTREELIHADHVLLVADDQSGLTEAEQAILDELPDDVT-YTLIFNKID 315 >gi|309973499|gb|ADO96700.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2846] Length = 461 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 226 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 286 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 345 Query: 142 C 142 Sbjct: 346 L 346 >gi|254506757|ref|ZP_05118897.1| GTP-binding protein EngA [Vibrio parahaemolyticus 16] gi|219550338|gb|EED27323.1| GTP-binding protein EngA [Vibrio parahaemolyticus 16] Length = 494 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 4/181 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L + K + K +L++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTAADEAIAKHLRKLEKPSMLVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 + AE + +E + ++A G G ++ + S ++ DL Sbjct: 124 DAD--AASAEFWQ--LGVENMYQIAAAHGRGVTALIELALNPFAEKLLDESKGELEDLTE 179 Query: 204 F 204 F Sbjct: 180 F 180 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRT 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLDMDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|90194078|gb|ABD92600.1| ThdF [Phocoenobacter uteri] Length = 436 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 4/126 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI---LI 136 + +A D ++ I +W I+ AD V L++DS NI ++ R I +I Sbjct: 263 LRDASDEVERIGIERAWGEIEQADHVLLMIDSTESSTENIQTEWQDFLTRLPENIPVTVI 322 Query: 137 LNKIDC 142 NK+D Sbjct: 323 RNKVDL 328 >gi|83943023|ref|ZP_00955483.1| GTP-binding protein EngA [Sulfitobacter sp. EE-36] gi|83846031|gb|EAP83908.1| GTP-binding protein EngA [Sulfitobacter sp. EE-36] Length = 491 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +A+VG N GKSTL NR VG K+++V + TR + G + + +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVVDTAGLEEV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE--IAKRSSRLILILNKI 140 DS M RL+ + ADI ++D+ + V DL+ + K+S+ +IL NK Sbjct: 64 TDDSLQGRMRRLTERAVDMADICLFMIDAR--VGVTPSDLVFADILRKKSAHVILAANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + + + I + + + +SA G G +D+ ++L +P+A Sbjct: 122 EG----KAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYSHL---MPIA 163 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 26/175 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + TR + + + DT G+ Sbjct: 206 VAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLQTDWFDVPMRIFDTAGMRKRA 265 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ ++ DL + ++A+R R +++ +NK Sbjct: 266 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDA--DIPFEQQDLRIADLAEREGRAVVVAVNK 323 Query: 140 IDCVKP------------ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D ERLL Q + A VSA G G D + N + Sbjct: 324 WDLETDKQGKLKDLRESFERLLPQLKGA-------PLVTVSAKTGRGMDRLHNAI 371 >gi|227810186|gb|ACP41240.1| tRNA modification GTPase [Actinobacillus minor] Length = 420 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 195 REGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 254 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + +A D ++ I+ +W I AD V L++DS + K + L ++ + + + Sbjct: 255 LRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKTEWAEFLAKLPQNIP-VTV 313 Query: 136 ILNKIDCVKPERLLEQ 151 I NK+D LEQ Sbjct: 314 IRNKVDLSGESEGLEQ 329 >gi|188997363|ref|YP_001931614.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|229807528|sp|B2V5W6|DER_SULSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188932430|gb|ACD67060.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 445 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 10/163 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VA+VG NAGKS+L+N + + +V+ TTR V I+ EK+ Q +FLDT G+ Sbjct: 184 VAIVGKPNAGKSSLINALLNEERVLVSEIPGTTRDTV-DILYEKDGQKFLFLDTAGMRKK 242 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 L + + I+ AD+V LV+D+++ + I +R ++++NKI Sbjct: 243 SKVDFGLEFFSVGRTIEAIEKADVVVLVIDANQGATEQDTKIAGLIQRRYKPAVIVINKI 302 Query: 141 DCVKPERLLEQAE--IANKLVFIEKTFMV--SATKGHGCDDVL 179 D V ++ LE+ E + +L FI +V SA G D++L Sbjct: 303 DTVD-KKTLEKVEKQVRERLYFISYAPIVFTSAKTKEGLDELL 344 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 15/169 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKS+L NR +G + +IV TR + + + +DT G I Sbjct: 4 VAIVGIPNVGKSSLFNRIIGQRKAIVEDIPGVTRDRIVSTAEWRGVKFEVVDTGGYITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 +D + + + ++ +D+ VVD K + L KEIA R+ + +I+ +NK Sbjct: 64 EDKFAPYIRKQVEKELELSDLFIFVVDG----KQGLTPLDKEIANILHRTEKPVIVAVNK 119 Query: 140 IDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ID + E+L E E+ E +SA + G ++L+ + +P Sbjct: 120 IDDPEKEKLAYEFYELG-----FENIIPISAIQKLGLAELLDKVVEYIP 163 >gi|145634177|ref|ZP_01789888.1| tRNA modification GTPase [Haemophilus influenzae PittAA] gi|145268621|gb|EDK08614.1| tRNA modification GTPase [Haemophilus influenzae PittAA] Length = 452 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|167040606|ref|YP_001663591.1| GTP-binding protein EngA [Thermoanaerobacter sp. X514] gi|300914647|ref|ZP_07131963.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X561] gi|307724119|ref|YP_003903870.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X513] gi|238687595|sp|B0K3E4|DER_THEPX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166854846|gb|ABY93255.1| small GTP-binding protein [Thermoanaerobacter sp. X514] gi|300889582|gb|EFK84728.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X561] gi|307581180|gb|ADN54579.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X513] Length = 439 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 10/181 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 V++VG N GKSTL N+ +G ++SIV K TR + G + + + +DT G+ Sbjct: 3 GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62 Query: 81 FNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 NA+D + K+ +++ + I +D++ +VD+ L ++ + + +IL+ NK Sbjct: 63 PNAEDILFSKVRLQVE-AAIDTSDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNK 121 Query: 140 IDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +D K P + + + +SA+ G G ++L+ + LP Y+ + Sbjct: 122 VDSFKEMPPTYYDFFSLG-----LGNPIPISASNGLGIGELLDEVVKRLPQEELEYTEET 176 Query: 198 I 198 I Sbjct: 177 I 177 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+LVN+ +G + IV++ TTR + S+ V +DT GI Sbjct: 179 IAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + + + I+ +DI L++D+ + + +I+++NK D Sbjct: 239 RISESIERYSVLRALAAIERSDICLLMIDATEGPTEQDTKIAGYAFENGKGIIIVVNKWD 298 Query: 142 CVK 144 +K Sbjct: 299 AIK 301 >gi|254478023|ref|ZP_05091407.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM 12653] gi|214036027|gb|EEB76717.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM 12653] Length = 460 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 71/132 (53%), Gaps = 5/132 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ ++ K I +DT G Sbjct: 220 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYLNVKGIPIRLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD+V V+D+ REL +++ + ++ +I +LNK Sbjct: 280 IRDTDELVEKIGVERSKEVLGEADLVLFVIDASRELSKEDYEIFDILTGKN--IIFVLNK 337 Query: 140 IDCVKPERLLEQ 151 ID P+++ E+ Sbjct: 338 IDL--PKKIDEE 347 >gi|320536777|ref|ZP_08036777.1| ribosome-associated GTPase EngA [Treponema phagedenis F0421] gi|320146373|gb|EFW37989.1| ribosome-associated GTPase EngA [Treponema phagedenis F0421] Length = 473 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 12/166 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +AL+G N GKSTL N + SIV+ TTR +V G S K V DT GI Sbjct: 207 LALLGKPNTGKSTLANYLTKSSASIVSDIAGTTRDVVHGNFSYKGMHFVLADTAGIRKKN 266 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 A Y+ ++ + ++ DIV ++D+ L ++ + +KR +I +LNK Sbjct: 267 KVTAGIEYYSVLRAI--KSLDSTDIVFYLIDAQEGLSEQDKKIIVQASKRGLGIIFLLNK 324 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLN 180 D + + + ++AE K++F + ++ + A G G L+ Sbjct: 325 WDMMAQDPKTFQEAERQIKIMFAKMEYVPVLPICAQTGKGVKKALD 370 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 25/179 (13%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR------SIVRGIVSEKESQIVFLDT 77 + +VG N GKSTL NRF+ + +I TR +IV G+ + +DT Sbjct: 27 LIVIVGRPNVGKSTLFNRFLRKRRAITDSVQGVTRDPIEEQAIVNGL------PVRLMDT 80 Query: 78 PGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 G +D L++ + ++ AD + L++D+ L + + ++ + S Sbjct: 81 GGFKLTRSGLQDEDVMDSLVVEKTIEALERADRILLLLDAGHALPED-EEFIQFLRPYWS 139 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +LI +NK + + E AE N + E +SA G ++ + L + Sbjct: 140 KLIAAVNKTEGGRLE-----AEAYNYFKYGFEHLVFISAEHGDNISELGELMTEGLDFS 193 >gi|113866134|ref|YP_724623.1| tRNA modification GTPase TrmE [Ralstonia eutropha H16] gi|113524910|emb|CAJ91255.1| Predicted GTPase [Ralstonia eutropha H16] Length = 488 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 8/126 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 V L G N GKS+L+N GA+++IVT TTR VR + + +DT G+ + Sbjct: 235 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREH 294 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-------IHDLLKEIAKRSSRLIL 135 A D ++ I +W I+ ADIV +VD+ L+ I D L S ++ Sbjct: 295 AADEVERIGIERTWDAIRRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVR 354 Query: 136 ILNKID 141 I+NKID Sbjct: 355 IVNKID 360 >gi|90194088|gb|ABD92605.1| ThdF [Actinobacillus porcitonsillarum] Length = 436 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + +A D ++ I+ +W I AD V L++DS + K + L ++ + + + Sbjct: 263 LRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKTEWAEFLAKLPQNIP-VTV 321 Query: 136 ILNKIDCVKPERLLEQ 151 I NK+D LEQ Sbjct: 322 IRNKVDLSGESEGLEQ 337 >gi|323499818|ref|ZP_08104777.1| GTP-binding protein Der [Vibrio sinaloensis DSM 21326] gi|323315059|gb|EGA68111.1| GTP-binding protein Der [Vibrio sinaloensis DSM 21326] Length = 494 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 4/181 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L + + + K +L++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTAADEAIAQHLRKLEKPSMLVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 + AE + +E + ++A G G +++ + S ++ DL Sbjct: 124 DAD--AASAEFWQ--LGVENMYQIAAAHGRGVTALIDLALNPFAEKLLEESKGELEDLTG 179 Query: 204 F 204 F Sbjct: 180 F 180 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 209 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRT 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL +++ +NK D Sbjct: 269 RINETVEKFSVVKTLKAVEDANVVMLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWD 328 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 329 GLDTDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 365 >gi|121997392|ref|YP_001002179.1| GTP-binding protein EngA [Halorhodospira halophila SL1] gi|166198720|sp|A1WUL5|DER_HALHL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|121588797|gb|ABM61377.1| small GTP-binding protein [Halorhodospira halophila SL1] Length = 472 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 5/183 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S +ALVG N GKSTL NR G++ ++V TR GIV + V +DT G+ Sbjct: 2 SAVIALVGRPNVGKSTLFNRLTGSRDALVADHPGLTRDRQYGIVRHQGGHAVVVDTGGMG 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + M + + I AD V +VD V ++ E+ + + L +NK D Sbjct: 62 EELEGVGGCMHEQARAAIAGADAVVFLVDGQAGATVGDEEIAAELRRAQVPVFLAVNKTD 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA-PWVYSADQISD 200 + + + A+ + ++ ++AT+G G ++L+ + + LP A P +D Sbjct: 122 GL--DAGVAAADFHG--LGLQPVHAIAATRGRGVGELLDAVFALLPPAEPDAVGSDGPGG 177 Query: 201 LPM 203 +P+ Sbjct: 178 IPV 180 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 14 DFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ- 71 D V + G VA++G N GKSTLVNR +G + +V + TTR + + E++ Q Sbjct: 168 DAVGSDGPGGIPVAMIGRPNVGKSTLVNRLLGEERVVVYDEPGTTRDSI-AVPFERDGQH 226 Query: 72 IVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +DT G+ +++ K + + I+ A +V LV D+ + L + + Sbjct: 227 YTLIDTAGVRRRARVQETVEKFSVVKTLEAIERASVVMLVTDAQEGITEQDAHLAGHVLQ 286 Query: 129 RSSRLILILNKIDCVKP-ERLLEQAEIANKLVFI--EKTFMVSATKGHGC 175 L+L++NK D + P +R + ++ + F+ + VSA G G Sbjct: 287 AGRALVLVINKWDGLDPDQRRKVRRDLDLRFAFLGFARHHFVSALHGSGV 336 >gi|289826410|ref|ZP_06545522.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 426 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 19/184 (10%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + + ++ NK D L +E+ + LV +SA G G D + N+L Sbjct: 321 IARLPKNLPITVVRNKADITG--ETLGISEVNGHSLV------RLSARTGEGVDVLRNHL 372 Query: 183 CSTL 186 ++ Sbjct: 373 KQSM 376 >gi|313635544|gb|EFS01763.1| tRNA modification GTPase TrmE [Listeria seeligeri FSL N1-067] Length = 457 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S +K AD + LV++ + EL + L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALKDADFILLVLNQNEELTIEDEALFE--AASGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|301169727|emb|CBW29328.1| GTPase [Haemophilus influenzae 10810] Length = 452 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|282895428|ref|ZP_06303565.1| GTP-binding protein engA [Raphidiopsis brookii D9] gi|281199461|gb|EFA74324.1| GTP-binding protein engA [Raphidiopsis brookii D9] Length = 453 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 9/186 (4%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 + E+ + + +Q+NS VA+VG N GKS+L+N FVG + +IV+ TTR + Sbjct: 158 LDELIKYTPQVEDLQENSEV-KVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTID 216 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ + +DT GI K + I ++ I+ AD+V LV+D+ + Sbjct: 217 TLIEREGQAYRLIDTAGIRKKKHVEYGTEFFSINRAFKAIRRADVVLLVLDALDGVTEQD 276 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHG 174 L I + I+++NK D V+ + + + +L F E T VSA G Sbjct: 277 QKLAGRIIEDGRACIIVVNKWDAVEKDSYTIYDHEKSLEARLHFTEWADTIFVSAVTGQR 336 Query: 175 CDDVLN 180 + +L+ Sbjct: 337 VEKILD 342 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKST VNR G + +IV + TR + + + +DT G +FN Sbjct: 6 VAIIGRPNVGKSTFVNRLAGDQTAIVHDEPGVTRDRTYRPAFWQNREFLVVDTGGLVFND 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + + + + A VVD L ++ + + +++ +L +NK C Sbjct: 66 NTEFLPLIRQQAITALSEACAAIFVVDGQAGLTPADEEIAEWLRQQTVPTLLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P++ + QA +L E + +SA G G D+L+ L P Sbjct: 124 SPDQGVIQASEFWELGLGEP-YPISAIHGSGTGDLLDELIKYTP 166 >gi|204928462|ref|ZP_03219661.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321895|gb|EDZ07093.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 454 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 321 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|126658269|ref|ZP_01729419.1| GTP-binding protein EngA [Cyanothece sp. CCY0110] gi|126620418|gb|EAZ91137.1| GTP-binding protein EngA [Cyanothece sp. CCY0110] Length = 452 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+++G N GKS+L+N F+G + +IV+ TTR + +V E+ +DT GI K Sbjct: 179 VSIIGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDTIDTVVERGENTYRLIDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ AD+V LV+D+ + L I I+++NK D Sbjct: 239 NVNYGAEFFSINRAFKAIRRADVVLLVIDAIDGVTDQDIKLADRIIDEGRAAIIVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V+ + + + ++L F+E VSA G +++ Sbjct: 299 AVEKDSYTIYEYKQRVMDRLYFMEWADIIFVSAMSGKRVENIF 341 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFN 82 VA++G N GKSTLVNR + +IV + TR ++ +DT G +F+ Sbjct: 5 IVAIIGRPNVGKSTLVNRLAKDRQAIVHDQPGITRDRTYRPAFWRDRDFQVVDTGGLVFD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + L+ + + + A VVD ++ + ++ ++L +NK C Sbjct: 65 DDTEFLPLIREQAMAALTEASAAIFVVDGQLGPTAGDREISDWLRRQQVPVLLAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 PE+ L QA +L E + +S G G ++L+ L + LP S D++ D Sbjct: 123 ESPEQGLMQAAEFWELGLGEP-YPISGIHGSGTGELLDELITYLP------SPDELPD 173 >gi|93005486|ref|YP_579923.1| GTP-binding protein EngA [Psychrobacter cryohalolentis K5] gi|122415786|sp|Q1QD14|DER_PSYCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|92393164|gb|ABE74439.1| Small GTP-binding protein domain [Psychrobacter cryohalolentis K5] Length = 480 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKSTL N+F ++ ++V TR G + ++ + +DT GI A Sbjct: 6 VVALIGRPNVGKSTLFNQFTKSRQALVADLSGLTRDRQYGDATYEDKAFIVVDTGGIGEA 65 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + M S++ I ADI+ VVD+ + ++ K + + ++ NK+ Sbjct: 66 DDGRGDIDDYMSEQSYTAIHEADIIVFVVDARAGMIGADAEIGKFLHTLGKPVYVVANKV 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D V + A + + + + ++A+ G G ++L L + +P Sbjct: 126 DGVH-----DSAPAEFYALGLGEPYPMAASHGRGVGNLLEVLTADMP 167 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 6/160 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKSTLVNR +G +V TTR + + + V +DT G+ Sbjct: 180 LAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPYTREGKDYVLIDTAGVRRRG 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ +++ +V+D+H + ++ L++ +NK D Sbjct: 240 KIDEKVEKFSVIKTLQAIEDSNVTVIVIDAHEGIVDQDLHMIGYALDAGRALVVAINKWD 299 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 + ++ + E+ + FI K +SA G G ++ Sbjct: 300 GLTADQKNYIKIEMDRRFNFIPYVKVHQISALHGTGVGNL 339 >gi|299133685|ref|ZP_07026879.1| ribosome-associated GTPase EngA [Afipia sp. 1NLS2] gi|298591521|gb|EFI51722.1| ribosome-associated GTPase EngA [Afipia sp. 1NLS2] Length = 461 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 12/180 (6%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +DF D +R VA++G NAGKSTL+N +G + + + + TTR + V K ++ Sbjct: 180 EDFEDDPTRPIRVAVLGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVDVEWKGRKL 239 Query: 73 VFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAK 128 DT G+ D KL + + ++ A++V LVVD+ + DL L ++ + Sbjct: 240 RVFDTAGLRRRSRIDDKLEKLSVSDALRAVRFAEVVVLVVDAQNRFEE--QDLRLADLVE 297 Query: 129 RSSR-LILILNKIDCVK--PERLLEQAEIANKL---VFIEKTFMVSATKGHGCDDVLNYL 182 R R L+L +NK D V+ P + + E A+ L V +S G G D ++ + Sbjct: 298 REGRALVLAVNKWDLVERAPSAIGKLRETADHLLPQVRGAPVVAISGLMGEGIDRLIGAI 357 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL NR VG K+++V + TR G+ + + +DT G+ + Sbjct: 4 TIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRREGLGRLGDLEFTIIDTAGLDSG 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + S M + + I AD + V+D+ L N + A+R+++ +L+L Sbjct: 64 PRGSLTARMQEQTETAIAAADALMFVIDARAGLTPNDR-AFADFARRANKPVLLL----A 118 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E +A IA + +SA G G D+ + L +P Sbjct: 119 NKSEGKQGEAGIAESYALGLGDPIGISAEHGEGLGDLYDALRELMP 164 >gi|260662533|ref|ZP_05863428.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN] gi|260553224|gb|EEX26167.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN] Length = 462 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 RDGLATAIIGRPNVGKSSLLNALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D+ K+ + S I+ AD++ L++DS R L L++ A++ ++I NK Sbjct: 281 IRHTDDTVEKIGVERSKQAIETADLILLLIDSSRLLTEEDRALIEATAQKPR--MVIFNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM 166 D L E E+ N I+ + + Sbjct: 339 TDLPAQVDLAELTELVNGDPVIQTSIL 365 >gi|242240151|ref|YP_002988332.1| GTP-binding protein EngA [Dickeya dadantii Ech703] gi|242132208|gb|ACS86510.1| small GTP-binding protein [Dickeya dadantii Ech703] Length = 494 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 56/120 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L H + + + R L+ NK+D + Sbjct: 64 EDGVETRMAEQSLQAIEEADIVLFLVDARDGLMPADHAIAQHLRTREKATFLVANKVDGI 123 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + E + + +DT G+ Sbjct: 209 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYILIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 269 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 328 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + EQ + + +L FI+ + +SA G G ++ Y CST Sbjct: 329 GLSQE-IKEQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVDEAYECST 380 >gi|68249586|ref|YP_248698.1| tRNA modification GTPase TrmE [Haemophilus influenzae 86-028NP] gi|81335985|sp|Q4QLQ9|MNME_HAEI8 RecName: Full=tRNA modification GTPase mnmE gi|68057785|gb|AAX88038.1| probable tRNA modification GTPase TrmE [Haemophilus influenzae 86-028NP] Length = 452 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 >gi|297724335|ref|NP_001174531.1| Os05g0567300 [Oryza sativa Japonica Group] gi|255676585|dbj|BAH93259.1| Os05g0567300 [Oryza sativa Japonica Group] Length = 180 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 38/53 (71%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 N RSG VA++G N GKSTL+N+ VG K+SIVT K QTTR + GI SE E Q Sbjct: 122 NHRSGYVAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQ 174 >gi|240949809|ref|ZP_04754138.1| tRNA modification GTPase TrmE [Actinobacillus minor NM305] gi|240295726|gb|EER46421.1| tRNA modification GTPase TrmE [Actinobacillus minor NM305] Length = 452 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 212 REGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 271 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + +A D ++ I+ +W I AD V L++DS + K + L ++ + + + Sbjct: 272 LRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKTEWAEFLAKLPQNIP-VTV 330 Query: 136 ILNKIDCVKPERLLEQ 151 I NK+D LEQ Sbjct: 331 IRNKVDLSGESEGLEQ 346 >gi|205354570|ref|YP_002228371.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|254811492|sp|B5RFY2|MNME_SALG2 RecName: Full=tRNA modification GTPase mnmE gi|205274351|emb|CAR39376.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629706|gb|EGE36049.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 454 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 321 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|168464825|ref|ZP_02698717.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632244|gb|EDX50728.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 454 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 321 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|167754411|ref|ZP_02426538.1| hypothetical protein ALIPUT_02705 [Alistipes putredinis DSM 17216] gi|167659036|gb|EDS03166.1| hypothetical protein ALIPUT_02705 [Alistipes putredinis DSM 17216] Length = 461 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 18/183 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+NR +G + ++V+ TTR + ++ F+DT G+ + Sbjct: 221 AVAIVGEPNVGKSTLLNRLLGEERALVSDIAGTTRDTIEETLNIDGVLFRFIDTAGLHDT 280 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D ++ I + I+ A IV VVD+ + I +I +RL LI+NK C Sbjct: 281 ADRLEQMGIDRTQEMIRRAQIVLQVVDATCPIPPAI-----QITSEQTRL-LIVNK--CD 332 Query: 144 KPERLLEQAEIANKLVFIE--------KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 P+ + ++++++ IE T +SA G G + +L L +T +Y Sbjct: 333 SPDARITESKVSSG-CGIEYRVSSANPDTLFISAKTGEGIERLLARLRATFDTG-SIYDG 390 Query: 196 DQI 198 D + Sbjct: 391 DPV 393 >gi|317496611|ref|ZP_07954958.1| tRNA modification GTPase TrmE [Gemella moribillum M424] gi|316913276|gb|EFV34775.1| tRNA modification GTPase TrmE [Gemella moribillum M424] Length = 460 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 6/153 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+L+N + +IVT TTR ++ V+ K I +DT GI +D Sbjct: 226 AIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEHVNIKGVPIKLIDTAGIRETED 285 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 K+ + S ++ AD+V +++S EL + +LLK +++ I+ILNK+D Sbjct: 286 VVEKIGVERSKEALEKADLVLFLLNSSEELTDDDRELLKLTEGKTT--IIILNKLDL--- 340 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 E ++ EI KL + S T G D++ Sbjct: 341 ETKIDIEEI-EKLTYNHPIIKTSMTTYKGIDEL 372 >gi|62182330|ref|YP_218747.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168234430|ref|ZP_02659488.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235485|ref|ZP_02660543.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260372|ref|ZP_02682345.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194444972|ref|YP_002043092.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194473009|ref|ZP_03078993.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736496|ref|YP_002116786.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262577|ref|ZP_03162651.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207859069|ref|YP_002245720.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|75479674|sp|Q57HZ6|MNME_SALCH RecName: Full=tRNA modification GTPase mnmE gi|205422295|sp|A9MX84|MNME_SALPB RecName: Full=tRNA modification GTPase mnmE gi|254811491|sp|B5QUQ5|MNME_SALEP RecName: Full=tRNA modification GTPase mnmE gi|254811493|sp|B4SYB2|MNME_SALNS RecName: Full=tRNA modification GTPase mnmE gi|254811496|sp|B4TN11|MNME_SALSV RecName: Full=tRNA modification GTPase mnmE gi|62129963|gb|AAX67666.1| GTPase for tRNA modification and thiophene and furan oxidation [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194403635|gb|ACF63857.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194459373|gb|EDX48212.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711998|gb|ACF91219.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197240832|gb|EDY23452.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291436|gb|EDY30788.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205331633|gb|EDZ18397.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205350463|gb|EDZ37094.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710872|emb|CAR35236.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|322617245|gb|EFY14150.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619067|gb|EFY15953.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625134|gb|EFY21962.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630185|gb|EFY26956.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634389|gb|EFY31123.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635274|gb|EFY31989.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642902|gb|EFY39486.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322650576|gb|EFY46983.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656398|gb|EFY52690.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661578|gb|EFY57801.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661659|gb|EFY57878.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668227|gb|EFY64385.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672843|gb|EFY68951.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674975|gb|EFY71061.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683665|gb|EFY79678.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687741|gb|EFY83710.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716821|gb|EFZ08392.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192044|gb|EFZ77279.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200526|gb|EFZ85604.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204951|gb|EFZ89936.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206694|gb|EFZ91651.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211767|gb|EFZ96600.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218629|gb|EGA03336.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220030|gb|EGA04500.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224800|gb|EGA09065.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232491|gb|EGA16593.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235266|gb|EGA19351.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241054|gb|EGA25091.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241396|gb|EGA25428.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248627|gb|EGA32557.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252074|gb|EGA35934.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258622|gb|EGA42285.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262347|gb|EGA45905.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268183|gb|EGA51659.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270597|gb|EGA54042.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625578|gb|EGE31923.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 454 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 321 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|302871345|ref|YP_003839981.1| ribosome-associated GTPase EngA [Caldicellulosiruptor obsidiansis OB47] gi|302574204|gb|ADL41995.1| ribosome-associated GTPase EngA [Caldicellulosiruptor obsidiansis OB47] Length = 440 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 15/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR +G + +IV TR + G + +DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGEAEWRGITFNVIDTGGIEPY 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILN 138 ++D K M R + I +D++ +VD K + D KE+A R+S+ ++L +N Sbjct: 64 SEDIILKQMRRQAQFAIDMSDVIIFIVDG----KTGLTDADKEVANMLRTSKKPIVLAVN 119 Query: 139 KIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID + E ++ E E+ + +SA G G DVL+ + + L Sbjct: 120 KIDNISQEPMIYEFYELG-----LSDPIAMSAEHGTGVGDVLDAVVNYL 163 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 10/157 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+LVN +G + IV+ TTR + + I +DT G+ Sbjct: 178 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEGIPITLIDTAGLRRKS 237 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + M+R + I+ +DI +++D + + + I+ +NK Sbjct: 238 KIYDNVERYSMLR-TLQAIERSDICIILLDGTEGVSEQDAKVAGYAYEAGKGCIVAVNKW 296 Query: 141 DCV-KPERLLEQ--AEIANKLVFIE--KTFMVSATKG 172 D V K E+ ++ +I KL F++ +SA G Sbjct: 297 DAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTG 333 >gi|223041689|ref|ZP_03611885.1| tRNA modification GTPase TrmE [Actinobacillus minor 202] gi|198246542|gb|ACH82231.1| tRNA modification GTPase TrmE [Actinobacillus minor 202] Length = 452 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 212 REGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 271 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + +A D ++ I+ +W I AD V L++DS + K + L ++ + + + Sbjct: 272 LRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKTEWAEFLAKLPQNIP-VTV 330 Query: 136 ILNKIDCVKPERLLEQ 151 I NK+D LEQ Sbjct: 331 IRNKVDLSGESEGLEQ 346 >gi|139439670|ref|ZP_01773083.1| Hypothetical protein COLAER_02111 [Collinsella aerofaciens ATCC 25986] gi|133775011|gb|EBA38831.1| Hypothetical protein COLAER_02111 [Collinsella aerofaciens ATCC 25986] Length = 444 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 6/150 (4%) Query: 6 ITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 + E +D V D VA++G NAGKS+L NR +GA SIV++ TTR + + Sbjct: 162 VALLPEEEDEVADEFPDALNVAIIGRPNAGKSSLFNRILGADRSIVSNIAGTTRDAIDTV 221 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 V +DT GI Y + M+R I AD+ LVVD+ + Sbjct: 222 VERNGKHYRMVDTAGIRKKSTVYENIEYYSMVR-GLRAIDRADVALLVVDASVGVTEQDQ 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLE 150 ++ +R ++++LNK D + +R E Sbjct: 281 KVMGLAIERGCAIVVLLNKWDLLDDDRKRE 310 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 5/165 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 VA+VG N GKSTLVNR +IV TR + +DT GI Sbjct: 5 VAVVGRPNVGKSTLVNRLAQTSDAIVHESRGVTRDRSYHTADWNGREFTIVDTGGIEPLK 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D + + + + + A ++ VVD + + + + + + L++NK+D Sbjct: 65 SDDVFATSIRDQALAAAEEAAVILFVVDGRTGVTEEDESVARMLKRCDKPVFLLVNKLD- 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+R + L E T + SA GHG D+L+ + + LP Sbjct: 124 -NPDRENDSIWEFYSLGIGEPTPL-SALHGHGTGDLLDDIVALLP 166 >gi|16762483|ref|NP_458100.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143971|ref|NP_807313.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052691|ref|ZP_03345569.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424947|ref|ZP_03357697.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580794|ref|ZP_03362620.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213865392|ref|ZP_03387511.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|21363008|sp|Q8Z2N8|MNME_SALTI RecName: Full=tRNA modification GTPase mnmE gi|25319370|pir||AE0957 thiophene and furan oxidation protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504788|emb|CAD03153.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139607|gb|AAO71173.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 454 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 321 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|308051500|ref|YP_003915066.1| tRNA modification GTPase trmE [Ferrimonas balearica DSM 9799] gi|307633690|gb|ADN77992.1| tRNA modification GTPase trmE [Ferrimonas balearica DSM 9799] Length = 455 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 17/177 (9%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 V+ ++R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 204 VRRSARQGALMREGMKVVIAGRPNAGKSSLLNALAGRESAIVTDIAGTTRDVLREHIHID 263 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + +DT G+ +A D ++ I +WS I AD V L+VD + + E+ Sbjct: 264 GMPLHIIDTAGLRDASDEVERIGIERAWSEIAQADRVLLMVDGTETDATDPAAIWPELID 323 Query: 129 RSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + L LI NK D L + + F +SA G G + + +L Sbjct: 324 RLPQEMGLTLIRNKAD-------LTGEAVDHGQAGGHPMFRLSAKTGEGVEALKQHL 373 >gi|218129883|ref|ZP_03458687.1| hypothetical protein BACEGG_01465 [Bacteroides eggerthii DSM 20697] gi|217987993|gb|EEC54318.1| hypothetical protein BACEGG_01465 [Bacteroides eggerthii DSM 20697] Length = 461 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ V+ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNVLLNEEKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETN 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDC 142 D+ L I ++ + A+IV ++D+ + I L ++ R+ +LIL+ NK+D Sbjct: 284 DTIESLGIERTFQKLDQAEIVLWMIDA-TNAQTQITQLSSQLLPRCRAKQLILVYNKVDL 342 Query: 143 V 143 V Sbjct: 343 V 343 >gi|161616963|ref|YP_001590928.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194447879|ref|YP_002047875.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197250655|ref|YP_002148780.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243069|ref|YP_002217792.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387122|ref|ZP_03213734.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205359076|ref|ZP_02666996.2| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|161366327|gb|ABX70095.1| hypothetical protein SPAB_04784 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406183|gb|ACF66402.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197214358|gb|ACH51755.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197937585|gb|ACH74918.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604220|gb|EDZ02765.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205338960|gb|EDZ25724.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|322647617|gb|EFY44104.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] Length = 467 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 214 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 273 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 274 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 333 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 334 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 386 Query: 184 STL 186 ++ Sbjct: 387 QSM 389 >gi|134299023|ref|YP_001112519.1| GTP-binding protein EngA [Desulfotomaculum reducens MI-1] gi|172044273|sp|A4J3P1|DER_DESRM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134051723|gb|ABO49694.1| small GTP-binding protein [Desulfotomaculum reducens MI-1] Length = 439 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VGA+++IV TR + + + +DT G+ A Sbjct: 5 IVAIVGRPNVGKSTLFNRIVGARIAIVEDMPGVTRDRLYQDAEWQGREFTLVDTGGLDFA 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D + + + I ADI+ VVD+ L ++ + + + +IL+ NK++ Sbjct: 65 EDIITAQIRKQAELAIYEADIILFVVDAREGLTAIDEEVGRTLRRADKPVILVANKVEHF 124 Query: 144 K--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P Q + + + VSA +G D+L+ L LP Sbjct: 125 DKIPYYDFYQLGLGDPV-------PVSAAEGLNTGDLLDELVKNLP 163 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+LVN +G + IV++ TTR + + V +DT G+ K Sbjct: 177 IAVIGRPNVGKSSLVNTILGEERVIVSNIPGTTRDAIDSSFEKNGKNYVLVDTAGMRRRK 236 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + + D+ +V D+ + ++ ++ +ILI+NK D Sbjct: 237 KIDLPTERYSVVRALRAVDRCDVALMVFDATEGIAEQDKRIVGYAHEKGKAIILIINKWD 296 Query: 142 CV-KPERLLEQAE--IANKLVFIE--KTFMVSA 169 + K ++ + + E I +L F++ T +SA Sbjct: 297 LIEKDDKTMNRFEKKIREELAFLDYVPTLYISA 329 >gi|289436062|ref|YP_003465934.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172306|emb|CBH28852.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 457 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S +K AD + LV++ + EL + L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALKDADFILLVLNQNEELTIEDEALFE--AASGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|224585642|ref|YP_002639441.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254811494|sp|C0Q2L4|MNME_SALPC RecName: Full=tRNA modification GTPase mnmE gi|224470170|gb|ACN48000.1| tRNA modification GTPase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 454 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 321 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|205360204|ref|ZP_02835285.2| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340459|gb|EDZ27223.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088264|emb|CBY98026.1| tRNA modification GTPase mnmE [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 467 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 214 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 273 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 274 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 333 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 334 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 386 Query: 184 STL 186 ++ Sbjct: 387 QSM 389 >gi|167548868|ref|ZP_02342627.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325776|gb|EDZ13615.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 454 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 321 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|94676730|ref|YP_588490.1| GTP-binding protein EngA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166224308|sp|Q1LU74|DER_BAUCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94219880|gb|ABF14039.1| GTP-binding protein EngA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 472 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 4/156 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ +IV TR G K + +DT GI + Sbjct: 4 IIALVGRPNVGKSTLFNKLTHTNDAIVADYSGLTRDRKYGHAKWKNYNFIVIDTGGIGIS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K +I+ S IK AD++ VVD+ L + + K + K +I+NKID + Sbjct: 64 KKGLAIHIIKQSLLAIKEADVIFFVVDAITGLMIEDQSIAKYLRKLQKPTFIIINKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + Q ++ + I + F ++A +G G + +L Sbjct: 124 D----ITQVKLQFYAINIGQIFPIAALQGRGINILL 155 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG++N GKSTL N F+G + +V TTR + E + V +DT G+ Sbjct: 190 LAIVGSSNVGKSTLANSFLGEERVVVFDMPGTTRDSTYIPMIRAEREYVLIDTAGLRKRS 249 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D KL + +I+ +++V LV+D+H+ + LL I ++++NK D Sbjct: 250 KITDIAEKLSTVKTLQSIEESNVVLLVLDAHKGISDQDLSLLSLIIDSGRAFVIVVNKWD 309 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + ER + +A +L FI + +SA G D + Y CST Sbjct: 310 NLSIERRNSIKDTLAYRLSFINFARIHFISALYGTNIDQIFQSVNEAYHCST 361 >gi|150016018|ref|YP_001308272.1| GTP-binding protein EngA [Clostridium beijerinckii NCIMB 8052] gi|189037141|sp|A6LSI6|DER_CLOB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149902483|gb|ABR33316.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052] Length = 438 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G ++SIV TR V +DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLRYNFTMIDTGGIEPEN 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K M R + I+ AD++ +VD L +++ + K ++L++NK+D + Sbjct: 66 NDIIIKQMRRQANIAIETADVIIFIVDGKEGLTAADNEVATMLRKSKKPVVLVVNKVDNL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +SA +G G D+L+ Sbjct: 126 KDEN--NAYEFYN--LGIGDPMAISAGQGLGLGDMLD 158 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 84/163 (51%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKS+L+N+ +G + IV+ TTR + + +E + + +DT G+ Sbjct: 179 IAMIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDSIDSHLETEEGKFILVDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + +++ I+ AD+ L++D+ + ++ + +++I+NK D Sbjct: 239 KVKEEIERYSVIRTYAAIERADVCILMIDATEGITEQDEKIIGYAHELRKAIMVIVNKWD 298 Query: 142 CV-KPERLLE--QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V K ++ L+ + ++ + L F+ + +SA G + VL Sbjct: 299 LVEKDDKTLDKFKKDLQSNLKFLSYAEYLFISALTGQRTNKVL 341 >gi|331266427|ref|YP_004326057.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5] gi|326683099|emb|CBZ00717.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5] Length = 457 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLAAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +EI ++ I Sbjct: 339 TDL--PE-AIETSEIPEDVIRI 357 >gi|145628055|ref|ZP_01783856.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21] gi|144979830|gb|EDJ89489.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21] Length = 452 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 >gi|90194106|gb|ABD92614.1| ThdF [Actinobacillus equuli subsp. haemolyticus] Length = 436 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL----KVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS ++ K D L ++ + + + Sbjct: 263 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQIAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|229843939|ref|ZP_04464080.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1] gi|229812933|gb|EEP48621.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1] Length = 452 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 >gi|317125285|ref|YP_004099397.1| GTP-binding protein HflX [Intrasporangium calvum DSM 43043] gi|315589373|gb|ADU48670.1| GTP-binding protein HflX [Intrasporangium calvum DSM 43043] Length = 495 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 15/191 (7%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI H+D + + G VA+ G TNAGKS+L+NR GA V + T + V Sbjct: 255 EIADMKTHRDTKRSTRKKGGVPSVAIAGYTNAGKSSLLNRLTGAGVLVENQLFATLDTTV 314 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI- 119 R ++ + DT G + ++ R + + AD++ VVD SH + + I Sbjct: 315 RRSETKDGREFTLTDTVGFVRSLPTHLVEAFRSTLEEVGDADLLLHVVDGSHPDPEGQIT 374 Query: 120 --HDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 ++L ++ + ++++NK D P ++ +++ EK + VSA G G Sbjct: 375 AVREVLADVEAADVKEVIVVNKADIADP-------DVLDRIRRHEKHSIAVSARTGAGIQ 427 Query: 177 DVLNYLCSTLP 187 ++++ + LP Sbjct: 428 ELIDLIARELP 438 >gi|119494580|ref|ZP_01624713.1| GTP-binding protein EngA [Lyngbya sp. PCC 8106] gi|119452086|gb|EAW33297.1| GTP-binding protein EngA [Lyngbya sp. PCC 8106] Length = 453 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N F+G +IV+ TTR + +V +DT GI K Sbjct: 179 VAIVGRPNVGKSSLLNAFLGENRAIVSPISGTTRDAIDTVVERNGKTYRLVDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ ++IV L++D+ + L +++ ++++NK D Sbjct: 239 NVEYGAEFFGINRAFKAIRRSNIVLLIIDAIDRVTEQDLKLANRVSEEGRACVIVVNKWD 298 Query: 142 CVKPE--RLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 ++ + +LE + E+ +L F++ KT VSA G + +++ Sbjct: 299 IIEKDTYTILEYEREVKARLYFMDWAKTIFVSAMTGQRVEKIID 342 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 4/175 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTLVNR + SIV + TR ++ + +DT G IF+ Sbjct: 6 VAIVGRPNVGKSTLVNRLSETQDSIVHDQPGITRDRTYRYAYWQDREFSVVDTGGLIFDD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + A + VVD L + + + S ++L +NK C Sbjct: 66 DTEFLPLIREQVMVALAEATVAIFVVDGQTGLTGGDEAIASWLREHSVPVLLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 P L Q+ +L + F +S+ G G ++L+ L +P A + +++I Sbjct: 124 SPTTGLIQSMQFWEL-GLGNPFPLSSIHGSGTGELLDELIKYIPKADELEESEEI 177 >gi|329897033|ref|ZP_08271805.1| GTP-binding protein EngA [gamma proteobacterium IMCC3088] gi|328921473|gb|EGG28859.1| GTP-binding protein EngA [gamma proteobacterium IMCC3088] Length = 463 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 15/178 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VA+VG N GKSTLVNR +G + +V TTR V + Q +DT G+ Sbjct: 178 VAIVGRPNVGKSTLVNRMLGEERVVVYDHPGTTRDSVYIDFEREGEQYTLIDTAGVRRRK 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK-- 139 N K+S K I + I +++V L++D+H + LL + L++++NK Sbjct: 238 NVKESVEKFSIVKTLKAIDDSNVVLLLMDAHEGIVDQDMHLLGHCIEAGRALVVVVNKWD 297 Query: 140 -IDCVKPERLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVLN-----YLCSTLPLA 189 +D + +R+ + I+ +L F+E M +SA G G + YL +T L+ Sbjct: 298 GLDDYQKDRI--KDSISRRLKFVEFAQMHFISALHGSGVGHLYQAIHTAYLAATQKLS 353 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G E V +DT GI Sbjct: 4 VIALMGRPNVGKSTLFNQLTRSRDALVADFSGLTRDRKYGEGKVGERPYVVIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + ADIV L++D+ L +L+ + ++S +++NKID + Sbjct: 64 ENGIDLPMAQQSMAAADEADIVLLILDARAGLTGVDQELVSLLRRQSIPFHVVVNKIDGM 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + I+ + ++A+ G ++ + + P Sbjct: 124 NSDTAMGDF----YSLGIDPLYRIAASHNRGVRSMIEEVLAPFP 163 >gi|296133088|ref|YP_003640335.1| ribosome-associated GTPase EngA [Thermincola sp. JR] gi|296031666|gb|ADG82434.1| ribosome-associated GTPase EngA [Thermincola potens JR] Length = 440 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 12/180 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--F 81 VA+VG N GKSTL NR G++++IV K TR + + + +DT GI Sbjct: 5 IVAIVGRPNVGKSTLFNRIAGSRIAIVEDKPGVTRDRIYKDAVWLDKEFTLVDTGGIEFR 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K S L+++ + I+ A+++ VVD+ L ++ + + +IL+ NK+ Sbjct: 65 DDKGSMSDLILQQARLAIEEAEVILFVVDARSGLTATDEEVARMLRNTKKPVILVANKV- 123 Query: 142 CVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 E ++ + + + MVSA+ G D+L+ + LP Y+A++ D Sbjct: 124 ----EDFTGNMDVYDFYRLGLGDPIMVSASHGLNVGDLLDEVVKHLP----EYAAEEYGD 175 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 6/144 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS++VN +G + IV+ TTR + + + +DT G+ Sbjct: 180 IAVIGRPNVGKSSIVNALLGEERVIVSDVAGTTRDAIDTYFERGGQRYLLIDTAGMRKKG 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + S + +D+V +++D+ + + + ++L++NK D Sbjct: 240 KIDEPTERYSVLRSLKAVDRSDVVLMIIDAQEVVTEQDKKIAGYAHEAGKAMVLVVNKWD 299 Query: 142 CVKPE---RLLEQAEIANKLVFIE 162 +K + L EI +L F++ Sbjct: 300 LIKKDDKTTLRYTEEIRQELGFVQ 323 >gi|307110642|gb|EFN58878.1| hypothetical protein CHLNCDRAFT_19706 [Chlorella variabilis] Length = 477 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VALVG N GKS+L+N G + +IVTH TTR IV V I LDT G Sbjct: 240 RTGLQVALVGRPNVGKSSLLNALSGTERAIVTHIAGTTRDIVEAGVVIGGIPITLLDTAG 299 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH 112 + + D ++ + S + + ADIV +V+D+ Sbjct: 300 LRESVDLVEQIGVERSMAAARQADIVLMVLDAQ 332 >gi|212632921|ref|YP_002309446.1| tRNA modification GTPase TrmE [Shewanella piezotolerans WP3] gi|212554405|gb|ACJ26859.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Shewanella piezotolerans WP3] Length = 453 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 10/140 (7%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ K+ I +W IK AD V +VD V+ H++ + Sbjct: 260 LDGMPLHIIDTAGLRDTADTVEKIGIERAWDEIKTADQVLFMVDGTTTNAVDPHEIWPDF 319 Query: 127 AKRSSR---LILILNKIDCV 143 R + + ++ NK D Sbjct: 320 IDRLPKNLGVTVVRNKADLT 339 >gi|150021499|ref|YP_001306853.1| GTP-binding protein EngA [Thermosipho melanesiensis BI429] gi|166225930|sp|A6LNG7|DER_THEM4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149794020|gb|ABR31468.1| small GTP-binding protein [Thermosipho melanesiensis BI429] Length = 437 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 4/158 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 V +VG +N GKSTL N+ +G K SIV +K TR V VS +DT GIF Sbjct: 2 ATVLIVGKSNVGKSTLFNKLIGKKKSIVDNKEGVTRDAVSDRVSYFGKSFKLIDTCGIFE 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D + + L+ + + DI+ VVD L + L + K +S +IL++NK + Sbjct: 62 RPEDIISERLKNLTLNMLSEGDIIIFVVDGKYGLTSEDYHLADLLRKSNSDVILVVNKSE 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 K ++ + L F E F +SA +G D ++ Sbjct: 122 NEK--KVFVNFDDFYSLGFGEPLF-ISAEQGKNIDRLI 156 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 13/153 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VAL+G NAGKSTL N + + ++VT TTR + +V + +F+DT G+ Sbjct: 182 VALIGRPNAGKSTLFNGILERERALVTPIPGTTRDAIDELVEINGKKYLFIDTAGLRRKS 241 Query: 81 ---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + D Y + S +I+ +D+V V+DS + + R +++ Sbjct: 242 KVEYKSIDMYSNVR---SIKSIELSDVVVFVIDSLEGITHQDQKIAGIAENRGKATVVVF 298 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 NKID VK + +Q I + F+E+ + VS + Sbjct: 299 NKIDLVKNFKYRKQEFIEH---FMERLYFVSYS 328 >gi|78066576|ref|YP_369345.1| small GTP-binding protein [Burkholderia sp. 383] gi|77967321|gb|ABB08701.1| GTP-binding protein HflX [Burkholderia sp. 383] Length = 396 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|319947147|ref|ZP_08021381.1| thiophene and furan oxidation protein ThdF [Streptococcus australis ATCC 700641] gi|319747195|gb|EFV99454.1| thiophene and furan oxidation protein ThdF [Streptococcus australis ATCC 700641] Length = 457 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD+V LV+++ L LL EI++ S+R+IL LNK Sbjct: 281 IRETEDIVERIGVERSRKALKEADLVLLVLNASEPLTDQDRQLL-EISQDSNRIIL-LNK 338 Query: 140 IDC 142 +D Sbjct: 339 VDL 341 >gi|319954737|ref|YP_004166004.1| tRNA modification gtpase trme [Cellulophaga algicola DSM 14237] gi|319423397|gb|ADV50506.1| tRNA modification GTPase trmE [Cellulophaga algicola DSM 14237] Length = 470 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 18/166 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + +IV+ TTR + +S F+DT GI + Sbjct: 224 VAIVGEPNVGKSTLLNSLLNEDRAIVSDIAGTTRDTIEDELSIDGIGFRFIDTAGIRETQ 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--------RELKVNIHDLLKEIAKRSSRLILI 136 D + I+ ++ IK A++V ++D LK+ I + + ++S ++L+ Sbjct: 284 DIVEGIGIKKTFEKIKQAEVVLYLIDGALIKEKKQIDALKIEIEKIKNQFPQKS--ILLL 341 Query: 137 LNKIDCVKPERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +NK D + E E A ++ +L KT ++A G G +D+ Sbjct: 342 VNKADKIATETTTLISSEMASLSAQL----KTIFIAAKTGEGVEDL 383 >gi|300176248|emb|CBK23559.2| unnamed protein product [Blastocystis hominis] Length = 492 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 26/184 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+N G++ +IV+ TTR +++ + + +++ DT G+ +++ Sbjct: 223 VTLFGPPNVGKSSLLNVLTGSEEAIVSAIPGTTRDVLKVDLDLEGWKVILQDTAGLHDSE 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSSRL------ 133 + + + + + + + + +VVD R+ K N+ +++EI A+R ++ Sbjct: 283 EVVEREGMNRARAAVAESSVRMVVVDVARDAKENVESMMREIEGKGEAERKGKMGESCLE 342 Query: 134 --------------ILILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDV 178 +++LNK D V E++ E E + NK F++ +S + G + V Sbjct: 343 GKENTKKSQLEGEVLVVLNKSDLVSKEQVEEVREFVLNKYPFVQNVLSISCKQKQGIEAV 402 Query: 179 LNYL 182 L L Sbjct: 403 LTAL 406 >gi|299135837|ref|ZP_07029021.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX8] gi|298601961|gb|EFI58115.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX8] Length = 631 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 5/169 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R VA+ G N GKSTL NR + SIV + TR + G V + +DT G Sbjct: 132 TRLPLVAICGRPNVGKSTLFNRLTQTRRSIVGDEPGITRDRIYGEVEWAGRDVRLVDTGG 191 Query: 80 IFNAKDSYHKLMI-RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + ++ I R + ++ AD++ +VVD EL +L + + + + L +N Sbjct: 192 VIPDDEALIPAEIFRQAKVGLEEADVIIMVVDGRTELAAPDIELARLLLRGGKPIFLAVN 251 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K+D PE L AE +L F +SA G D+L+ + + LP Sbjct: 252 KMDT--PE-LEAGAENFRRLGF-RNVLPISAEHAAGIGDLLDEVWAALP 296 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 20/180 (11%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR +A++G N GKSTL+N G+ +IV+ TTR V +V+ + F+DT G Sbjct: 351 SRETKIAIIGRPNVGKSTLLNALTGSDRAIVSPIAGTTRDAVDEVVTREGHDFRFIDTAG 410 Query: 80 IFNAKDS---YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 I + KL + +S ++ AD+ LV+D+ + ++ + +I+I Sbjct: 411 IRRKGKTKLLAEKLSVIMSRKHLEAADVALLVIDAAEGVAAADANIGGYAHESGRSVIII 470 Query: 137 LNKIDC---VKPE--RLLEQAEIANKLVFIEKT------------FMVSATKGHGCDDVL 179 +NK D V P+ RLL+ A++ V+ ++ VSA++ G + V Sbjct: 471 VNKWDLMTEVGPDGKRLLDGKPPADQKVYEQQVRDSLKYLDYAPLLFVSASESQGIEQVF 530 >gi|218887353|ref|YP_002436674.1| GTP-binding protein EngA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758307|gb|ACL09206.1| small GTP-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 506 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKS+LVN G + IV+ TTR V + I F+DT G+ Sbjct: 245 LAMLGRPNAGKSSLVNALTGQQRMIVSDMAGTTRDSVDVSFESGDKTITFVDTAGVRRRS 304 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS + + S + A + LV+D+ + + L+ + +R + ++++NKID Sbjct: 305 RITDSVERYSVNASLKSTTKAHVTLLVLDALQGVTQQDKRLVDLLDERKTPFMVLVNKID 364 Query: 142 CVKPERLLEQAEIANK--LVFIEKT--FMVSATKGHGCDDVL 179 V P +LL E + K L F VSA G G VL Sbjct: 365 LV-PRKLLPDLEASFKGMLEFCPHVPLLYVSAKSGKGLGPVL 405 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 16/188 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI-FN 82 +ALVG N GKSTL NR + A +I + TR + G V + Q +DT GI + Sbjct: 20 IALVGRPNVGKSTLFNRLIRANRAITHDRPGVTRDRMEGQVRSRGKQTFAIVDTGGITLD 79 Query: 83 AKDS----------YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 A + + ++R + + + A +CLVVD L L + + Sbjct: 80 AHAAVAEGPEGIRGFEAEILRQAEAAMAEAAGICLVVDGRDGLTPFDEHLAAHLRRAGKP 139 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +++++NK+D V ER E + L F VSA GH + + + LP P Sbjct: 140 VLVVVNKVDGV--EREDEMLAEFHALGF--PLLPVSAAHGHNVRVLEDEMREMLPDEPEE 195 Query: 193 YSADQISD 200 A D Sbjct: 196 EGAANGED 203 >gi|116072006|ref|ZP_01469274.1| tRNA modification GTPase [Synechococcus sp. BL107] gi|116065629|gb|EAU71387.1| tRNA modification GTPase [Synechococcus sp. BL107] Length = 451 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+NR + +IVT TTR ++ + I +DT GI Sbjct: 225 VALVGRPNVGKSSLLNRLSRRERAIVTELPGTTRDLLESEIVLDGVPITLMDTAGIRATN 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D+ +L I S + AD+V L+VD H LL I R +++ NK D Sbjct: 285 DAVEQLGIARSEEALMSADLVLLIVDGHAGWTETDAQLLARIPNAVPR-VVVANKSDLDG 343 Query: 145 P 145 P Sbjct: 344 P 344 >gi|307718005|ref|YP_003873537.1| tRNA modification GTPase [Spirochaeta thermophila DSM 6192] gi|306531730|gb|ADN01264.1| tRNA modification GTPase [Spirochaeta thermophila DSM 6192] Length = 449 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G TNAGKS+L N F+ +IV+ TTR + G +S K ++ DT GI + Sbjct: 222 VVLAGRTNAGKSSLFNLFMREDRAIVSEVHGTTRDYLEGWISLKGVPVLLYDTAGIRDGG 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D IR + + HAD V +VD L+ E+ LI + NK+D Sbjct: 282 DPVETEGIRRTREILSHADAVIYLVDGTEGFSEGEEALIAELGAERP-LIPVWNKVDA 338 >gi|229820636|ref|YP_002882162.1| small GTP-binding protein [Beutenbergia cavernae DSM 12333] gi|229566549|gb|ACQ80400.1| small GTP-binding protein [Beutenbergia cavernae DSM 12333] Length = 495 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR +G + ++V TR VR V +DT G + Sbjct: 60 VLAVIGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVRYTAEWAGRPFVLVDTGGWEHD 119 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + ++ AD V VVD+ +++ + K ++L+ NK+D Sbjct: 120 ARGLHARVAEQAEIAVELADAVMFVVDAAVGATDTDERVVRILRKSGKPVLLVANKVDDA 179 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + A + N + + + F SA G G D+L+ + LP Sbjct: 180 RGE--ADAAALWN--LGLGEPFATSALHGRGSGDLLDAALAILP 219 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 18/194 (9%) Query: 6 ITFFNEHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 + E + + R G VALVG N GKS+L+N G++ +V TTR V Sbjct: 215 LAILPERSAVARPSGRGGPRRVALVGKPNVGKSSLLNSLTGSERVVVDDVAGTTRDPVDE 274 Query: 64 IVSEKESQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV 117 ++ VF+DT GI D Y L + + I+ A++ +VVD+ L Sbjct: 275 LIELGGRPWVFVDTAGIRRRVHQAQGADFYASLRTQ---AAIEKAEVAVVVVDASVPLTE 331 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIE---KTFMVSATKG 172 +++E+ L++ NK D + PER LE+ EI LV ++ + + + T+ Sbjct: 332 QDIRVVQEVIDAGRALVIAYNKWDLMDPERRPFLER-EIELDLVQVQWAPRVNISAKTRW 390 Query: 173 HGCDDVLNYLCSTL 186 H D V +L + L Sbjct: 391 H-VDRVAKHLDTAL 403 >gi|195941645|ref|ZP_03087027.1| GTP-binding protein EngA [Borrelia burgdorferi 80a] gi|312149483|gb|ADQ29554.1| ribosome-associated GTPase EngA [Borrelia burgdorferi N40] Length = 433 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + + +++ + SS+++L+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRTYSSKVVLVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KECL---AHEFHNLGF-KRYFLVSAAHCRGITKLRDFL 159 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 7/124 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G +++IV+ + TTR ++ + +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFARNGKVFEVVDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D +L + + K+ ++++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYVTKKGKGIVIVFSK 293 Query: 140 IDCV 143 D V Sbjct: 294 WDLV 297 >gi|167762630|ref|ZP_02434757.1| hypothetical protein BACSTE_00987 [Bacteroides stercoris ATCC 43183] gi|167699736|gb|EDS16315.1| hypothetical protein BACSTE_00987 [Bacteroides stercoris ATCC 43183] Length = 461 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR I+ V+ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDIIEDTVNIGGITFRFIDTAGIRETS 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILNKIDC 142 D+ L I ++ + A+IV ++D+ + I L ++ R R LIL+ NK D Sbjct: 284 DTIESLGIERTFQKLDQAEIVLWMIDA-TNAQAQITQLAGQLLPRCERKQLILVYNKADL 342 Query: 143 V 143 V Sbjct: 343 V 343 >gi|330446667|ref|ZP_08310319.1| small GTP-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490858|dbj|GAA04816.1| small GTP-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 500 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 57/123 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L + K + R L++NK+D + Sbjct: 64 EEGVETKMAEQSLAAIEEADVVLFLVDGRAGLTAADEAIAKHLRSRDKPTFLVVNKVDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + V +DT GI K Sbjct: 214 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRK 273 Query: 85 DSYH---KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + K + + ++ A++V LV+D+ + LL L++ +NK D Sbjct: 274 NMHQAVEKFSVIQTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSLVIAVNKWD 333 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + ++E+ +L F++ + +SA G G Sbjct: 334 GLDNEVKERVKSELDRRLGFVDFARIHFISALHGTGV 370 >gi|320353154|ref|YP_004194493.1| ribosome-associated GTPase EngA [Desulfobulbus propionicus DSM 2032] gi|320121656|gb|ADW17202.1| ribosome-associated GTPase EngA [Desulfobulbus propionicus DSM 2032] Length = 445 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 17/188 (9%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N + VAL+G N GKSTL NR V + ++V TR VS +E + +DT Sbjct: 3 NDNATLVALIGRPNVGKSTLFNRMVKRRDALVDPTPGVTRDRHYARVSWEEHPFILVDTG 62 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLIL 135 GI + D+ + + I+ AD++ ++D L + I DLL+ K ++ Sbjct: 63 GIDDEDDTITNHIRHQALLAIEEADVIFFLMDGREGLTPSDIEIVDLLRRTEK---KVFF 119 Query: 136 ILNKIDCVKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 I+NKID PE +E A +A + +++ + +S G+G ++ L P++ Sbjct: 120 IVNKIDS--PE--IEDALLAPFWELGVDQLWALSGDHGYGYQTLMEGLL------PYLEK 169 Query: 195 ADQISDLP 202 D ++LP Sbjct: 170 TDLQTELP 177 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A +G N GKS++VN +G + +V+ TTR V +V+ + +DT GI Sbjct: 183 IAFLGRPNVGKSSMVNAIIGQERMVVSDIAGTTRDSVDTLVTRDPYTYLLIDTAGIRRKG 242 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + + DI +++D+ + ++ + LI+++NK D Sbjct: 243 KTTDKLEKFSVLKALKALGRCDIALVLIDAEEGITEQDTKVIGYTQDQGRALIVLINKWD 302 Query: 142 CVKP-----ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +K E+L+++ EIA K + VSA G G Sbjct: 303 LIKDDKKRQEQLMQEVEIAIKFIPFAPVLKVSALTGTG 340 >gi|222099393|ref|YP_002533961.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359] gi|221571783|gb|ACM22595.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359] Length = 455 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R + +VG N GKSTL+NR + +IVT TTR ++ + K +DT G Sbjct: 214 NRGLRMVIVGKPNVGKSTLLNRLLKEDRAIVTDIPGTTRDVISEEIVIKGILFRVVDTAG 273 Query: 80 IFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + +D +L I ++ I+ ADIV V+D+ L +L+ I + R ++++N Sbjct: 274 VRSETRDLVERLGIERTFQEIEKADIVLFVLDASSPLDDEDRLILERI--KHKRYLVVIN 331 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 K+D V ER+ E+ E+ KL +SA KG G + Sbjct: 332 KVDIV--ERIDEE-ELKRKLGTDRHIVKISALKGEGLE 366 >gi|170767411|ref|ZP_02901864.1| GTP-binding protein EngA [Escherichia albertii TW07627] gi|170123745|gb|EDS92676.1| GTP-binding protein EngA [Escherichia albertii TW07627] Length = 499 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 13 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGT 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 73 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGL 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + + ++A+ G G +L + L PW+ Sbjct: 133 DP----DQAVVDFYSLGLGEIYPIAASHGRGVLSLLERV-----LLPWM 172 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + V +DT G+ Sbjct: 214 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 274 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 333 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 334 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 374 >gi|90194110|gb|ABD92616.1| ThdF [Actinobacillus pleuropneumoniae serovar 1] Length = 436 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 263 LREANDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|56477029|ref|YP_158618.1| tRNA modification GTPase TrmE [Aromatoleum aromaticum EbN1] gi|81821140|sp|Q5P4P5|MNME_AZOSE RecName: Full=tRNA modification GTPase mnmE gi|56313072|emb|CAI07717.1| Thiophene and furan oxidation protein ThdF [Aromatoleum aromaticum EbN1] Length = 451 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 4/131 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V LVG N GKS+L+N G + +IVT TTR VR ++ + I +DT G Sbjct: 218 RSGMNVVLVGQPNVGKSSLLNCLAGDERAIVTDIAGTTRDAVRETIAIEGIPIHVIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + D +L + +W I AD++ +VD+ + D + I I NK Sbjct: 278 LRETADPVERLGVERTWREIARADVILRIVDARVGPQPG-DDAIDAALPEGVERITIFNK 336 Query: 140 IDC--VKPERL 148 ID ++P RL Sbjct: 337 IDLCGLEPARL 347 >gi|83954198|ref|ZP_00962918.1| GTP-binding protein EngA [Sulfitobacter sp. NAS-14.1] gi|83841235|gb|EAP80405.1| GTP-binding protein EngA [Sulfitobacter sp. NAS-14.1] Length = 491 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +A+VG N GKSTL NR VG K+++V + TR + G + + +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVVDTAGLEEV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE--IAKRSSRLILILNKI 140 DS M RL+ + ADI ++D+ + V DL+ + K+S+ +IL NK Sbjct: 64 TDDSLQGRMRRLTERAVDMADICLFMIDAR--VGVTPSDLVFADILRKKSAHVILAANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + + + I + + + +SA G G +D+ +L +P+A Sbjct: 122 EG----KAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTHL---MPIA 163 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 26/175 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + TR + + + DT G+ Sbjct: 206 VAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLQTDWFDVPMRIFDTAGMRKRA 265 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ ++ DL + ++A+R R +++ +NK Sbjct: 266 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDA--DIPFEQQDLRIADLAEREGRAVVVAVNK 323 Query: 140 IDCVKP------------ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D ERLL Q + A VSA G G D + N + Sbjct: 324 WDLETDKQGKLKDLRESFERLLPQLKGA-------PLVTVSAKTGRGMDRLHNAI 371 >gi|312873279|ref|ZP_07733334.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d] gi|311091159|gb|EFQ49548.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d] Length = 461 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG A+VG N GKS+L+N + +IVT+ TTR + VS K + +DT G Sbjct: 222 RSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L+++S EL LL E+ + R I+ILNK Sbjct: 282 IRQTDDIVEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLL-ELTQDKKR-IIILNK 339 Query: 140 IDCV 143 D V Sbjct: 340 ADQV 343 >gi|296114112|ref|YP_003628050.1| tRNA modification GTPase TrmE [Moraxella catarrhalis RH4] gi|295921806|gb|ADG62157.1| tRNA modification GTPase TrmE [Moraxella catarrhalis RH4] Length = 466 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR + + + DT G+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE--------------LKVNIHDLLKEIAKRS 130 D K+ I+ ++ I+ AD++ +V D E + ++ D++++ Sbjct: 283 DHVEKIGIKRAFDAIRQADVLMMVYDVTTETDPLALADQLFCEGVTEDVGDIIRQ----- 337 Query: 131 SRLILILNKIDCVKPERLLE---QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +LIL+ NK D + + +L+ + + A KLV+ VS G G D+++ L + Sbjct: 338 -KLILVANKSDLLVSKPVLQVSCETKSAPKLVY------VSCETGEGLDELIEILTQKVG 390 Query: 188 LAP 190 P Sbjct: 391 FHP 393 >gi|283778508|ref|YP_003369263.1| small GTP-binding protein [Pirellula staleyi DSM 6068] gi|283436961|gb|ADB15403.1| small GTP-binding protein [Pirellula staleyi DSM 6068] Length = 407 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 8/177 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG NAGKS L+N+ VG ++V + TTR +V+ + + DT G+ Sbjct: 198 VTIVGRPNAGKSALLNQLVGYARAMVFDQPGTTRDVVQVTTALGGYAVEISDTAGVRETS 257 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-SSRLILILNKIDCV 143 + + I + ++I D+ LV D L + L ++ R ++ LI++ NK D + Sbjct: 258 EPIEREGIERTLASIATCDLALLVFDQSAPLTADDQAFLAQVLPRLTAALIVVGNKSD-L 316 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL---PLA---PWVYS 194 P+ EQ N + + SA G G ++L L L PLA P ++S Sbjct: 317 PPQCSFEQLAAINTTIARAPSLSASALTGAGIRELLALLEKQLVPTPLAQGSPLLFS 373 >gi|205422374|sp|Q0KFG6|MNME_RALEH RecName: Full=tRNA modification GTPase mnmE Length = 475 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 8/126 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 V L G N GKS+L+N GA+++IVT TTR VR + + +DT G+ + Sbjct: 222 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREH 281 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-------IHDLLKEIAKRSSRLIL 135 A D ++ I +W I+ ADIV +VD+ L+ I D L S ++ Sbjct: 282 AADEVERIGIERTWDAIRRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVR 341 Query: 136 ILNKID 141 I+NKID Sbjct: 342 IVNKID 347 >gi|163746867|ref|ZP_02154224.1| GTP-binding protein EngA [Oceanibulbus indolifex HEL-45] gi|161379981|gb|EDQ04393.1| GTP-binding protein EngA [Oceanibulbus indolifex HEL-45] Length = 493 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 13/182 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAAKLADLRFTVIDTAGLEEV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL--KEIAKRSSRLILILNKI 140 DS M RL+ + ADI ++D+ + V D++ + + K+S+ +IL NK Sbjct: 64 TDDSLQGRMRRLTERAVDMADICLFMIDAR--VGVTPSDMVFAEILRKKSAHVILAGNKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + + I + + + +SA G G +D+ + L +PLA Y + D Sbjct: 122 EG----KAADAGMIEAYSLGLGEPIRLSAEHGEGLNDLYSML---MPLAD-EYEDRAVQD 173 Query: 201 LP 202 P Sbjct: 174 AP 175 Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 19/168 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR------GIVSEKESQIVFLDTP 78 VA+VG NAGKSTL+N+ +G + + TR + G + +F DT Sbjct: 204 VAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISLMTEWAGPDGDPVPMRIF-DTA 262 Query: 79 GIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLI 134 G+ ++ KL + +K A++V +++D+ E+ DL + ++A+R R + Sbjct: 263 GMRKKAKIQEKLEKLSVSDGLRAVKFAEVVVVLLDA--EIPFEQQDLRIADLAEREGRAV 320 Query: 135 LI-LNKIDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD 176 ++ +NK D + ++L E E +L+ + VSA G G D Sbjct: 321 VVAVNKWDIEENRQDKLRELKESFERLLPQLRGAPLITVSAKTGRGLD 368 >gi|317476897|ref|ZP_07936140.1| tRNA modification GTPase TrmE [Bacteroides eggerthii 1_2_48FAA] gi|316907072|gb|EFV28783.1| tRNA modification GTPase TrmE [Bacteroides eggerthii 1_2_48FAA] Length = 461 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ V+ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNVLLNEEKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETN 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDC 142 D+ L I ++ + A+IV ++D+ + I L ++ R+ +LIL+ NK+D Sbjct: 284 DTIESLGIERTFQKLDQAEIVLWMIDA-TNAQTQITQLSSQLLPRCRAKQLILVYNKVDL 342 Query: 143 V 143 V Sbjct: 343 V 343 >gi|222153198|ref|YP_002562375.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J] gi|222114011|emb|CAR42339.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J] Length = 458 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD+V LV+++ L LL +++K S+R+IL LNK Sbjct: 282 IRDTDDIVEKIGVERSKKALNEADLVLLVLNASESLTEQDRVLL-DLSKESNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|90579361|ref|ZP_01235171.1| GTP-binding protein EngA [Vibrio angustum S14] gi|90440194|gb|EAS65375.1| GTP-binding protein EngA [Vibrio angustum S14] Length = 500 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 57/123 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L + K + R L++NK+D + Sbjct: 64 EEGVETKMAEQSLAAIEEADVVLFLVDGRAGLTAADEAIAKHLRSREKPTFLVVNKVDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + V +DT GI K Sbjct: 214 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRK 273 Query: 85 DSYH---KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + K + + ++ A++V LV+D+ + LL L++ +NK D Sbjct: 274 NMHQAVEKFSVIQTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSLVIAVNKWD 333 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + ++E+ +L F++ + +SA G G Sbjct: 334 GLDNEVKERVKSELDRRLGFVDFARIHFISALHGTGV 370 >gi|326560694|gb|EGE11062.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 46P47B1] Length = 466 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR + + + DT G+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLVLNGLTVHLTDTAGLRKTD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE--------------LKVNIHDLLKEIAKRS 130 D K+ I+ ++ I+ AD++ +V D E + ++ D++++ Sbjct: 283 DHVEKIGIKRAFDAIRQADVLIMVYDVTTETDPLALADQLFCEGVTEDVGDIIRQ----- 337 Query: 131 SRLILILNKIDCVKPERLLE---QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +LIL+ NK D + + +L+ + + A KLV+ VS G G D+++ L + Sbjct: 338 -KLILVANKSDLLISKPVLQVSCETKSAPKLVY------VSCETGEGLDELIEILTQKVG 390 Query: 188 LAP 190 P Sbjct: 391 FHP 393 >gi|309791206|ref|ZP_07685738.1| small GTP-binding protein [Oscillochloris trichoides DG6] gi|308226768|gb|EFO80464.1| small GTP-binding protein [Oscillochloris trichoides DG6] Length = 525 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 11/170 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKST NR +G + +IV TTR + G +DT G+ Sbjct: 71 VALVGRPNVGKSTFFNRLIGERRAIVEDMPGTTRDRIYGDTFWNGRDFTVVDTAGLLFGG 130 Query: 85 DSYHKLMIRLSWST-------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 D + + +S T I+ AD V +VD + +++ + S ++L + Sbjct: 131 DDPNLPVAEMSRRTREQANLAIEEADAVIFMVDGREGMTAADNEVADVLRGTSKPVVLAV 190 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D V ER L+ E + + + +SA G DVL+ L P Sbjct: 191 NKCDSV--ERNLDAVEF--YALNLGEPIPMSAFHSLGTGDVLDRLVEAFP 236 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R +A+VG N GKS+L+N+ +G + S+V+ TTR + ++ ++ +DT Sbjct: 243 DTERHLHIAIVGRPNVGKSSLLNKLLGQERSVVSAIPGTTRDSIDTEITFHGERVTLIDT 302 Query: 78 PGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 GI + + K + + I+ D+ L++D+ + + + + Sbjct: 303 AGIRRSGRIEQGIEKYSVMRTLRAIERCDVALLLIDAEEGITAQDTHIAGMVLDAKKGIA 362 Query: 135 LILNKIDCVKP-----ERLLEQAEIANKLVFIEKTFMVSATKGH 173 +++NK D ++ + +Q A K + +SA G Sbjct: 363 ILVNKWDVIEKDNETFQEYEDQVRQAFKFIDYAPVLFISALSGQ 406 >gi|297571444|ref|YP_003697218.1| ribosome-associated GTPase EngA [Arcanobacterium haemolyticum DSM 20595] gi|296931791|gb|ADH92599.1| ribosome-associated GTPase EngA [Arcanobacterium haemolyticum DSM 20595] Length = 504 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR VG +V++V TR V+ +DT G Sbjct: 68 VLAILGRPNVGKSTLVNRIVGQRVAVVQDTPGVTRDRVKYDAEWAGVDFTIMDTGGWEAV 127 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + S I AD+V LVVD+ +++ + + +IL NK+D Sbjct: 128 VEGIDKSVSDSSEQAINEADVVMLVVDATVGATDTDERMVRLLRRSGKPVILAANKVDS- 186 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + A + N + + + +SA G G D+L+ LP Sbjct: 187 -PQGESDAAALWN--LGLGEPHPISALHGRGTGDLLHAAVKMLP 227 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 10/145 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G+ +V TTR V ++ F+DT G+ Sbjct: 244 VALVGRPNVGKSSLLNQLAGSNRVVVNELAGTTRDPVDEVIELDGQPWTFVDTAGVRRRV 303 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + S I+ A++ +++D+ + +++++ +++I+N Sbjct: 304 HLTKGADYYATLRTQ---SAIEKAELGLVLMDASEPMAEQDIRVVQQVIDAGRAVVVIMN 360 Query: 139 KIDCVKPERLLE-QAEIANKLVFIE 162 K D V+ ER LE E +LV I+ Sbjct: 361 KWDLVEEERRLELDREFERELVQIQ 385 >gi|209963483|ref|YP_002296398.1| GTP-binding protein hflX, putative [Rhodospirillum centenum SW] gi|209956949|gb|ACI97585.1| GTP-binding protein hflX, putative [Rhodospirillum centenum SW] Length = 430 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R I +I+ DT G + Sbjct: 183 VVALVGYTNAGKSTLFNRMAGADVFAKDLLFATLDPTMRAITLPSNRKIILSDTVGFIS- 241 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHREL---KVNIHDLLKEIA---KRSSRLI 134 D H L+ R + ++ ADIV V D SH + K ++ +L+E+ +R++ Sbjct: 242 -DLPHGLVEAFRATLEEVQAADIVLHVRDVSHPDTEAQKADVETVLRELGIEVDSDARVV 300 Query: 135 LILNKIDCV-KPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +LNKID V + ER LL QA T +SA G G + + + Sbjct: 301 EVLNKIDLVPEGERDALLRQARRTG------DTVAISALTGEGLGGLFDLI 345 >gi|224533510|ref|ZP_03674099.1| ribosome-associated GTPase EngA [Borrelia burgdorferi CA-11.2a] gi|224513183|gb|EEF83545.1| ribosome-associated GTPase EngA [Borrelia burgdorferi CA-11.2a] Length = 433 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + + +DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ D++ LV+D + E+ + + +++ + SS+++L+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRTYSSKVVLVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KECL---AHEFHNLGF-KRYFLVSAAHCRGITKLRDFL 159 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 7/124 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G +++IV+ + TTR ++ + +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D +L + + K+ ++++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVQEKLTSQDKKIAHYVTKKGKGIVIVFSK 293 Query: 140 IDCV 143 D V Sbjct: 294 WDLV 297 >gi|90194112|gb|ABD92617.1| ThdF [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 434 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 263 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|83311472|ref|YP_421736.1| GTPase [Magnetospirillum magneticum AMB-1] gi|82946313|dbj|BAE51177.1| GTPase [Magnetospirillum magneticum AMB-1] Length = 435 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 81/173 (46%), Gaps = 18/173 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL N+ A+V T +R +V +I+ DT G + Sbjct: 208 VALVGYTNAGKSTLFNQLTRAEVLAKDMLFATLDPTMRDLVLPSGRKIILSDTVGFIS-- 265 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNIHDL--------LKEIAKRSSRL 133 D H+L+ R + + AD+V V D SH + + D+ L E+ R L Sbjct: 266 DLPHELVAAFRATLEEVLEADVVVHVRDVSHPDTEAQAADVDTVLKELGLAEVVDRG--L 323 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + LNKID + ER + E+ N+ E +SA G G D++L L L Sbjct: 324 VEALNKIDLLDDER---RQEVLNQARRREGVMALSAVTGQGVDELLAELDRRL 373 >gi|255321133|ref|ZP_05362299.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SK82] gi|262380178|ref|ZP_06073333.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SH164] gi|255301687|gb|EET80938.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SK82] gi|262298372|gb|EEY86286.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SH164] Length = 469 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + +DT GI + Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGES 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I AD++ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EQGIDSYMAEQSKTAIHEADLIIFVVDARAGLLASDEQIARELRTLGKKVFLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E A + + + + V+A+ G G +L + + +P Sbjct: 124 HA----EAAVVEFYKLGLGEPMHVAASHGRGVAQMLEEVLADVP 163 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 15/179 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTLVNR +G + + + TTR V Q +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEERVVAYDEPGTTRDSVYIPFERDGRQYTLIDTAGVRRKG 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE--LKVNIHDLLKEIAKRSSRLILILNK 139 + K + + +K A +V +V+D+ RE ++ ++H L+ + +++ +NK Sbjct: 239 KVDEMIEKFSVVKTLQAMKDAHVVVVVLDA-REGVVEQDLH-LIGYALEAGRAMVIAINK 296 Query: 140 IDCVKP-ERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL-----NYLCSTLPLAP 190 D + +R + ++ + FI + ++SA G G D+ Y S L ++P Sbjct: 297 WDNMSEYDRKQCKLDVDRRFDFIPWARIHLISALHGTGVGDLYPSIHRAYDSSHLKVSP 355 >gi|82779236|ref|YP_405585.1| tRNA modification GTPase TrmE [Shigella dysenteriae Sd197] gi|293417178|ref|ZP_06659805.1| tRNA modification GTPase TrmE [Escherichia coli B185] gi|309784244|ref|ZP_07678883.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617] gi|123561062|sp|Q329B1|MNME_SHIDS RecName: Full=tRNA modification GTPase mnmE gi|81243384|gb|ABB64094.1| GTP-binding protein [Shigella dysenteriae Sd197] gi|291431209|gb|EFF04202.1| tRNA modification GTPase TrmE [Escherichia coli B185] gi|308927751|gb|EFP73219.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617] Length = 454 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGISEV-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|125973539|ref|YP_001037449.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405] gi|256003357|ref|ZP_05428348.1| small GTP-binding protein [Clostridium thermocellum DSM 2360] gi|281417743|ref|ZP_06248763.1| ribosome-associated GTPase EngA [Clostridium thermocellum JW20] gi|166224331|sp|A3DE77|DER_CLOTH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|125713764|gb|ABN52256.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405] gi|255992647|gb|EEU02738.1| small GTP-binding protein [Clostridium thermocellum DSM 2360] gi|281409145|gb|EFB39403.1| ribosome-associated GTPase EngA [Clostridium thermocellum JW20] gi|316940220|gb|ADU74254.1| ribosome-associated GTPase EngA [Clostridium thermocellum DSM 1313] Length = 440 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 14/188 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKS+L+NR +G + IV+ TTR + V + + VF+DT GI Sbjct: 180 VAVVGKPNVGKSSLINRILGEERVIVSDIPGTTRDAIDTFVENEHGKFVFIDTAGIRRQS 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 + K I SW+ I+ AD+ +++D+ E I E K S I+++N Sbjct: 240 KINEKIEKYSIIRSWTAIERADVCLILIDAKEGVTEQDTKIAGYAHEQGKAS---IIVVN 296 Query: 139 KIDCV-KPERLLEQAE--IANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K D + K LE+ + KL F+ +SA G D + + A Sbjct: 297 KWDLIEKQTGTLEEYRRTVHEKLGFMLYAPVIFISALTGQRVDRIYGLIKHVADQAAMRI 356 Query: 194 SADQISDL 201 S ++DL Sbjct: 357 STGVLNDL 364 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKST N VG ++SIV TR + V + + +DT GI Sbjct: 5 VVAVVGRPNVGKSTFFNYLVGKRISIVEDTPGVTRDRIYAEVEWRNKKFTLIDTGGIEPY 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D + M R + I+ ADI+ +VD + + ++ + K +I+ +NK+D Sbjct: 65 SEDKIMQQMKRQAEIAIETADIIIFMVDVKDGVTASDKEVATLLRKTKKPVIVAVNKVDK 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + E N L F E +S+ G G D+L+ + P Sbjct: 125 IG-ELPADFYEFYN-LGFGE-LMAISSIHGLGMGDLLDEIFKYFP 166 >gi|169351641|ref|ZP_02868579.1| hypothetical protein CLOSPI_02422 [Clostridium spiroforme DSM 1552] gi|169291863|gb|EDS73996.1| hypothetical protein CLOSPI_02422 [Clostridium spiroforme DSM 1552] Length = 444 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + + +IVT+ TTR IV G +S + +DT GI D Sbjct: 222 IIGKPNVGKSSLLNALLQEEKAIVTNIAGTTRDIVEGSISIDGIVLNMIDTAGIRETDDI 281 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + S I AD+V LV+D +L +LL E+ S+R I++LNK D Sbjct: 282 IESMGVEKSKELINQADLVLLVIDGSLKLDQGDQELL-ELTNDSNR-IIVLNKAD 334 >gi|16767128|ref|NP_462743.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|21363010|sp|Q8ZKY3|MNME_SALTY RecName: Full=tRNA modification GTPase mnmE gi|16422417|gb|AAL22702.1| GTPase for tRNA modification and thiophene and furan oxidation [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261248984|emb|CBG26841.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996130|gb|ACY91015.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312914972|dbj|BAJ38946.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225561|gb|EFX50616.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132204|gb|ADX19634.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990693|gb|AEF09676.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 454 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 321 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGIDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|115351795|ref|YP_773634.1| small GTP-binding protein [Burkholderia ambifaria AMMD] gi|115281783|gb|ABI87300.1| GTP-binding protein HflX [Burkholderia ambifaria AMMD] Length = 396 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|319789668|ref|YP_004151301.1| ribosome-associated GTPase EngA [Thermovibrio ammonificans HB-1] gi|317114170|gb|ADU96660.1| ribosome-associated GTPase EngA [Thermovibrio ammonificans HB-1] Length = 479 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKSTL+N VG + +IV+ TTR + V + + +F+DT GI Sbjct: 224 VAIVGRPNMGKSTLLNALVGEERAIVSDIPGTTRDAIDTYVRVGDDEFIFIDTAGIRRRG 283 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 KD + +R S I AD+V L+VD+ + ++ +++ +NKID Sbjct: 284 KIKDIEYYSYLR-SLDAIDRADVVVLMVDAQEGPTERDAKIAGMALEKFKPIVIAVNKID 342 Query: 142 CVKP----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +K ERL + ++ + +SA + G ++L Sbjct: 343 TLKDQKEWERLQRELDLVFDFIPFAPRVFISAKERKGLKELL 384 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 11/127 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R VA+VG N GKS+L NR +G KV+I+ + TR V E ++V +DT G+ Sbjct: 3 RLPVVAIVGRPNVGKSSLFNRLLGRKVAIIDNTPGVTRDRVVQEADIDEHKVVLVDTGGV 62 Query: 81 FNAKDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LI 134 KD+ + K + ++ AD++ VVD I+ L +E+AK R +I Sbjct: 63 VE-KDAHEFAKETTEQAKRAMEEADVIVFVVDGQE----GINPLDEEVAKLLRRWKKPVI 117 Query: 135 LILNKID 141 + +NKID Sbjct: 118 VAVNKID 124 >gi|253991869|ref|YP_003043225.1| tRNA modification GTPase TrmE [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783319|emb|CAQ86484.1| trna modification gtpase trme [Photorhabdus asymbiotica] Length = 454 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G +IVT TTR ++R + Sbjct: 201 DRVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ A D ++ I +W I+ AD V +VDS V ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDSTTTDAVEPVEIWPEF 320 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R S + ++ NK D E + + V +SA G G D + ++L Sbjct: 321 MARLPESLPITVVRNKTDMTNEETSITE-------VRGYSLIRLSAHSGEGIDLLRDHLK 373 Query: 184 STL 186 T+ Sbjct: 374 ETM 376 >gi|238913095|ref|ZP_04656932.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 467 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 214 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 273 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 274 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 333 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 334 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 386 Query: 184 STL 186 ++ Sbjct: 387 QSM 389 >gi|312871302|ref|ZP_07731400.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a] gi|312874855|ref|ZP_07734874.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b] gi|311089600|gb|EFQ48025.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b] gi|311093316|gb|EFQ51662.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a] Length = 461 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG A+VG N GKS+L+N + +IVT+ TTR + VS K + +DT G Sbjct: 222 RSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L+++S EL LL E+ + R I+ILNK Sbjct: 282 IRQTDDIVEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLL-ELTQDKKR-IIILNK 339 Query: 140 IDCV 143 D V Sbjct: 340 ADQV 343 >gi|171321329|ref|ZP_02910288.1| GTP-binding proten HflX [Burkholderia ambifaria MEX-5] gi|171093386|gb|EDT38574.1| GTP-binding proten HflX [Burkholderia ambifaria MEX-5] Length = 396 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|170702833|ref|ZP_02893682.1| GTP-binding proten HflX [Burkholderia ambifaria IOP40-10] gi|170132251|gb|EDT00730.1| GTP-binding proten HflX [Burkholderia ambifaria IOP40-10] Length = 396 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|312872669|ref|ZP_07732734.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1] gi|311091711|gb|EFQ50090.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1] Length = 461 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG A+VG N GKS+L+N + +IVT+ TTR + VS K + +DT G Sbjct: 222 RSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L+++S EL LL E+ + R I+ILNK Sbjct: 282 IRQTDDIVEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLL-ELTQDKKR-IIILNK 339 Query: 140 IDCV 143 D V Sbjct: 340 ADQV 343 >gi|253682586|ref|ZP_04863383.1| ribosome-associated GTPase EngA [Clostridium botulinum D str. 1873] gi|253562298|gb|EES91750.1| ribosome-associated GTPase EngA [Clostridium botulinum D str. 1873] Length = 438 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G +++IV TR + ++ +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAQAEWLNNKFTIIDTGGIEPES 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M R + I+ AD+V +VD + L ++ + + K + ++L +NKID Sbjct: 66 EDVIVAQMRRQAQMAIEMADVVLFIVDGKQGLADADREVAQMLRKANKSIVLAVNKID-- 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R L+ + + +SA++G G D+L+ + P Sbjct: 124 --RRQLDDNIYEFYNLGLGDPMAISASQGLGLGDLLDEVVDKFP 165 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+L+NR +G + IV++ TTR V + +E + +DT G+ Sbjct: 179 IAMVGRPNVGKSSLINRILGEEKHIVSNIPGTTRDSVDSYIEREEGKFALIDTAGLRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++I++AD+ L++D+ + + ++ + + +I+I+NK D Sbjct: 239 KIKEQVERYSAVRTIASIENADVCILMLDAEQGIAEQDEKIIGYAHELNKAIIVIVNKWD 298 Query: 142 CVKPE 146 ++ + Sbjct: 299 LIEKD 303 >gi|255690104|ref|ZP_05413779.1| tRNA modification GTPase TrmE [Bacteroides finegoldii DSM 17565] gi|260624386|gb|EEX47257.1| tRNA modification GTPase TrmE [Bacteroides finegoldii DSM 17565] Length = 466 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 4/127 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG VA++G TNAGKSTL+N + +IV+ TTR ++ +S F+DT G Sbjct: 219 KSGVPVAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTISIGGVTFRFIDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILIL 137 I D L I ++ ++ A+IV +VDS I L K+I R LI++ Sbjct: 279 IRETNDKIESLGIERTFQKLEQAEIVLWMVDSVNAAS-QIEQLSKKIIPRCEGKHLIVVF 337 Query: 138 NKIDCVK 144 NK D ++ Sbjct: 338 NKADLIE 344 >gi|301160376|emb|CBW19901.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 458 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 205 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 264 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 265 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 324 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 325 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGIDVLRNHLK 377 Query: 184 STL 186 ++ Sbjct: 378 QSM 380 >gi|302388592|ref|YP_003824414.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1] gi|302199220|gb|ADL06791.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1] Length = 459 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG + +IVT TTR ++ + ++ + +DT GI + +D Sbjct: 227 ILGKPNAGKSSLLNVLVGEERAIVTDIAGTTRDTLKEQIRLEDLSLNIIDTAGIRDTQDV 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K+ + + S + AD++ VVD L N ++L I R + +++LNK D + Sbjct: 287 VEKIGVEKARSAAQEADLIIYVVDGSCPLDENDEEILTFIESRKA--VVLLNKTDLI 341 >gi|220912306|ref|YP_002487615.1| GTP-binding protein EngA [Arthrobacter chlorophenolicus A6] gi|219859184|gb|ACL39526.1| small GTP-binding protein [Arthrobacter chlorophenolicus A6] Length = 516 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR +G + ++V TR V S +DT G + Sbjct: 80 VLAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSASWNGRNFTLVDTGGWEHD 139 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + ++ AD V VVDS ++K + + +I++ NK+D Sbjct: 140 ARGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRRSKKPVIMVANKVDD- 198 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++A+ A L F E + VSA G G D+L+++ LP Sbjct: 199 ----FAQEADSAALWGLGFGEP-YPVSALHGRGVADLLDHVMDVLP 239 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 15/158 (9%) Query: 16 VQDNSRSGC---VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 V+ RSG +AL+G N GKS+L+N+ G + +V + TTR V + + Sbjct: 244 VEGVERSGGPRRIALIGRPNVGKSSLLNKLAGTERVVVDNTAGTTRDPVDEFIELGDRTW 303 Query: 73 VFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 F+DT GI D Y L + + + A ++ V + E V I L E Sbjct: 304 RFVDTAGIRRRQHMAQGADYYASLRTQAALEKAEVAVVLLAVDEVLSEQDVRILQLAIES 363 Query: 127 AKRSSRLILILNKIDCVKPE--RLLEQAEIANKLVFIE 162 + L+L NK D + E R LE+ EI L +E Sbjct: 364 GR---ALVLAFNKWDLLDDERRRYLER-EIEQDLAHVE 397 >gi|90194108|gb|ABD92615.1| ThdF [Actinobacillus lignieresii] gi|90194114|gb|ABD92618.1| ThdF [Actinobacillus pleuropneumoniae] gi|90194116|gb|ABD92619.1| ThdF [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|90194118|gb|ABD92620.1| ThdF [Actinobacillus pleuropneumoniae] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 263 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|281418695|ref|ZP_06249714.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20] gi|281407779|gb|EFB38038.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20] Length = 459 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 21 RSGCVA-LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A ++G N GKS+L+N G +IVT TTR I+ ++ + +DT G Sbjct: 219 REGIDAVIIGKPNVGKSSLLNELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + + I AD+V +++D+ R + + + +L + + +LI+++NK Sbjct: 279 IRETEDVVEKIGVEKTHRAIDEADLVIMMIDAKRGMDEDDNRILTMLGDK--KLIILINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 ID V +++ E L+ K S +G G ++ N + Sbjct: 337 IDLVDEKQINE----IESLLKGRKCIRTSVKEGTGISELENAIT 376 >gi|116689827|ref|YP_835450.1| small GTP-binding protein [Burkholderia cenocepacia HI2424] gi|170733166|ref|YP_001765113.1| GTP-binding proten HflX [Burkholderia cenocepacia MC0-3] gi|206560241|ref|YP_002231005.1| putative GTP-binding protein [Burkholderia cenocepacia J2315] gi|116647916|gb|ABK08557.1| GTP-binding protein HflX [Burkholderia cenocepacia HI2424] gi|169816408|gb|ACA90991.1| GTP-binding proten HflX [Burkholderia cenocepacia MC0-3] gi|198036282|emb|CAR52178.1| putative GTP-binding protein [Burkholderia cenocepacia J2315] Length = 395 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|309800286|ref|ZP_07694459.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302] gi|308116070|gb|EFO53573.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302] Length = 457 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ + ++ I Sbjct: 339 TDL--PEA-IETSELPDAVIRI 357 >gi|190150819|ref|YP_001969344.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264169|ref|ZP_07545762.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915950|gb|ACE62202.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870489|gb|EFN02240.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 452 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 212 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 271 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 272 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 330 Query: 136 ILNKIDC 142 I NK+D Sbjct: 331 IRNKVDL 337 >gi|307246406|ref|ZP_07528481.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255391|ref|ZP_07537200.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259841|ref|ZP_07541558.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852686|gb|EFM84916.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861648|gb|EFM93633.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866087|gb|EFM97958.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 452 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 212 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 271 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 272 LREANDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 330 Query: 136 ILNKIDC 142 I NK+D Sbjct: 331 IRNKVDL 337 >gi|160942963|ref|ZP_02090201.1| hypothetical protein FAEPRAM212_00440 [Faecalibacterium prausnitzii M21/2] gi|158445657|gb|EDP22660.1| hypothetical protein FAEPRAM212_00440 [Faecalibacterium prausnitzii M21/2] gi|295103496|emb|CBL01040.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii SL3/3] Length = 447 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 4/175 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ G +++IV TR + + + +DT GI A Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWNGHEFLLVDTGGIEPKA 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M + I AD + +V D L D+ + + +IL +NK D V Sbjct: 66 TEGILAHMREQAQIAIDTADCIIMVTDVRNGLTAADEDVAHMLRRSHKPIILAVNKCDKV 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 E +E E N + ++ +S+ GHG D+L+ +C+ L + V D+I Sbjct: 126 G-EAPMELYEFYN--LGFDEVMPISSVHGHGTGDLLDAVCAHLDFSETVVEEDRI 177 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+L NR +G IV ++ TTR + V + +F DT G+ Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N D + M+ + + ++ + + ++VD+ + ++ I+++NK D Sbjct: 239 NISDGLERYMVVRALAAVERSRVALILVDATVGFTEQDSKVAGYAHEQGKACIIVVNKWD 298 Query: 142 CVK 144 V+ Sbjct: 299 AVE 301 >gi|90194098|gb|ABD92610.1| ThdF [Actinobacillus suis ATCC 33415] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 263 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|125974850|ref|YP_001038760.1| tRNA modification GTPase TrmE [Clostridium thermocellum ATCC 27405] gi|256003893|ref|ZP_05428880.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360] gi|205829145|sp|A3DHY8|MNME_CLOTH RecName: Full=tRNA modification GTPase mnmE gi|125715075|gb|ABN53567.1| tRNA modification GTPase trmE [Clostridium thermocellum ATCC 27405] gi|255992231|gb|EEU02326.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360] gi|316941972|gb|ADU76006.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 1313] Length = 459 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 21 RSGCVA-LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A ++G N GKS+L+N G +IVT TTR I+ ++ + +DT G Sbjct: 219 REGIDAVIIGKPNVGKSSLLNELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + + I AD+V +++D+ R + + + +L + + +LI+++NK Sbjct: 279 IRETEDVVEKIGVEKTHRAIDEADLVIMMIDAKRGMDEDDNRILTMLGDK--KLIILINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 ID V +++ E L+ K S +G G ++ N + Sbjct: 337 IDLVDEKQINE----IESLLKGRKCIRTSVKEGTGISELENAIT 376 >gi|238753871|ref|ZP_04615231.1| GTP-binding protein engA [Yersinia ruckeri ATCC 29473] gi|238707859|gb|EEQ00217.1| GTP-binding protein engA [Yersinia ruckeri ATCC 29473] Length = 496 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSRQKATFLVANKTDGM 123 Query: 144 KPE 146 +PE Sbjct: 124 EPE 126 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + + +DT G+ Sbjct: 212 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMIRDEREYILIDTAGVRKRG 271 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 272 KVTETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 331 Query: 142 CVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN-----YLCST 185 + E ++ + E+ V + +SA G G ++ Y CST Sbjct: 332 GMTEEARTQVKDMLELRLGFVDFARIHFISALHGSGVGNLFESILEAYDCST 383 >gi|195978761|ref|YP_002124005.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975466|gb|ACG62992.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 446 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 15 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDV 74 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + ++ R+++ +IL++NK+D Sbjct: 75 DAPFMEQIKHQAHIAMDEADVIVFVV-SGKEGVTDADEYVSKLLYRTNKPVILVVNKVD- 132 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + + + + + F VS+ G G DVL+ + LP+ V + D I Sbjct: 133 -NPEMRNDIYDFYS--LGLGDPFPVSSVHGIGTGDVLDAIIDNLPVEEIVENDDVI 185 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 12/127 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + +++ Q +DT G+ + Sbjct: 188 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTSFTDESGQAYTMIDTAGMRKSG 247 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 Y K + + I +DIV +V+++ I D K IA + +I+++ Sbjct: 248 KVYENTEKYSVMRAMRAIDRSDIVLMVINAEE----GIRDYDKRIAGFAHEAGKGMIIVV 303 Query: 138 NKIDCVK 144 NK D ++ Sbjct: 304 NKWDTIE 310 >gi|90194104|gb|ABD92613.1| ThdF [Actinobacillus equuli subsp. equuli] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 263 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|89068274|ref|ZP_01155684.1| GTP-binding protein EngA [Oceanicola granulosus HTCC2516] gi|89046191|gb|EAR52249.1| GTP-binding protein EngA [Oceanicola granulosus HTCC2516] Length = 488 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLADLRFTVIDTAGLEEA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D S M RL+ ++ AD+ ++D+ + + K+S+ +IL NK + Sbjct: 64 TDESLQGRMRRLTERAVEMADVCLFLIDARTGVTPTDEVFADILRKKSAYVILGANKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R E + + + + +SA G G D+L L Sbjct: 124 ----RAGEGGLLEAYALGLGEPIGLSAEHGEGMADLLEAL 159 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 12/176 (6%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E D+ +R VA+VG NAGKSTL+NR +G + + + TR + + + + Sbjct: 188 ELPDWRPTEARPLQVAVVGRPNAGKSTLINRILGEERLLTGPEAGITRDSISLTLEWEGT 247 Query: 71 QIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEI 126 + DT G+ +D KL + ++ A++V +++D + DL + ++ Sbjct: 248 PVRLFDTAGMRKRAKVQDKLEKLSVADGLRAVRFAEVVVVLLDVE--IPFEQQDLRIADL 305 Query: 127 AKRSSRLILI-LNKIDC--VKPERLLE-QAEIANKLVFIEKTFM--VSATKGHGCD 176 A+R R ++I +NK D K ++L E +AE L + + VSA G G D Sbjct: 306 AEREGRAVVIAVNKWDLEGEKQDKLRELRAEFERLLPQLRGAPLVTVSARTGRGLD 361 >gi|320539280|ref|ZP_08038950.1| ribosome-associated GTPase [Serratia symbiotica str. Tucson] gi|320030672|gb|EFW12681.1| ribosome-associated GTPase [Serratia symbiotica str. Tucson] Length = 495 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 6/167 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + ++ + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTQTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGH 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L++NK D + Sbjct: 64 EDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRNRQKATFLVVNKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P+ + A+ + + + + + ++A+ G G ++ ++ +P P Sbjct: 124 DPD--VVTADFYS--LGLGEVYAIAASHGRGVRQLIEHVL--MPFLP 164 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKHG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 270 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDRDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E+ + +L F++ + +SA G G ++ Y C+T Sbjct: 330 GMSEEERTHVKEMLDLRLGFVDFARVHFISALHGSGVGNLFESVLEAYACAT 381 >gi|225028844|ref|ZP_03718036.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353] gi|224953840|gb|EEG35049.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353] Length = 471 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 2/153 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+ +N +G + +IVT TTR + V+ + +DT GI + +D Sbjct: 234 IVGKPNAGKSSFLNALLGEERAIVTDIAGTTRDTLEESVTIDGITLNIVDTAGIRDTEDK 293 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + + + I+ AD++ ++D+ ++ ++L+ I R + I++LNK D E Sbjct: 294 VESIGVERAKKEIESADLILFLMDTSVQISEEDIEILQRI--RDKKKIILLNKSDKATEE 351 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 EQ+ + + +SA G G D+ + Sbjct: 352 SGFEQSALKEYISEETPVISISAKYGDGIDNFI 384 >gi|188524409|ref|ZP_03004430.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273778|ref|ZP_03206312.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195660088|gb|EDX53468.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249533|gb|EDY74315.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 442 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+L NR + + SIV + TR + + + + +DT GI ++ Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISS 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 +D+Y + I A+ + +V + + + I +LKE AK ++IL++NK+ Sbjct: 63 EDTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAK-DKKVILVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + K + E+ + K F +SA G G D+L+ L +P+ Sbjct: 122 ESEK--YYFNEGELYS--FGFGKFFKISAEHGIGMGDLLDELVKDMPI 165 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-- 84 ++G N GKS+L N +G + IV + +TR + S + +DT G+ Sbjct: 179 IIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRDSIDNDFSYHNKKYTIIDTAGVRRKGKI 238 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 ++ K + + I+ + ++ LV+D K Sbjct: 239 VEAVEKYAVLRTQKAIERSQLILLVLDGSEPFK 271 >gi|168494446|ref|ZP_02718589.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06] gi|221231770|ref|YP_002510922.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC 700669] gi|225854518|ref|YP_002736030.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA] gi|183575548|gb|EDT96076.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06] gi|220674230|emb|CAR68765.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC 700669] gi|225724002|gb|ACO19855.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA] gi|332075364|gb|EGI85833.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41301] Length = 457 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ +L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEQLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|218708645|ref|YP_002416266.1| GTP-binding protein EngA [Vibrio splendidus LGP32] gi|254783178|sp|B7VJU2|DER_VIBSL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218321664|emb|CAV17618.1| GTP-binding protein engA [Vibrio splendidus LGP32] Length = 493 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ M S + I AD+V +VD L V I L+++ K S +L++NK+ Sbjct: 64 EEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPS---MLVVNKV 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QIS 199 D + P + A + +E + ++A G G +++ + P A + + + ++S Sbjct: 121 DGIDP----DAASADFWQLGVEDMYQIAAAHGRGVTALIDLALN--PFAEALKAENGEVS 174 Query: 200 DL 201 DL Sbjct: 175 DL 176 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRRK 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N ++ K + + I+ A++V L++D+ + LL +++ +NK D Sbjct: 268 NINETVEKFSVVKTLKAIEDANVVLLLIDARENISDQDLSLLGFALNAGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLDNDVKDRVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|326571730|gb|EGE21743.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC8] gi|326574355|gb|EGE24298.1| tRNA modification GTPase TrmE [Moraxella catarrhalis CO72] Length = 466 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR + + + DT G+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE--------------LKVNIHDLLKEIAKRS 130 D K+ I+ ++ I+ AD++ +V D E + ++ D++++ Sbjct: 283 DHVEKIGIKRAFDAIRQADVLMMVYDVTTETDPLALADQLFCEGVTEDVGDIIRQ----- 337 Query: 131 SRLILILNKIDCVKPERLLE---QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +LIL+ NK D + + +L+ + + A KLV+ VS G G D+++ L + Sbjct: 338 -KLILVANKSDLLISKPVLQVSCETKSAPKLVY------VSCETGEGLDELIEILTQKVG 390 Query: 188 LAP 190 P Sbjct: 391 FHP 393 >gi|322374354|ref|ZP_08048868.1| tRNA modification GTPase TrmE [Streptococcus sp. C300] gi|321279854|gb|EFX56893.1| tRNA modification GTPase TrmE [Streptococcus sp. C300] Length = 457 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRDTDDIVEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLL-EISQVTNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ ++ I Sbjct: 339 TDL--PEA-IETSELPEDIIRI 357 >gi|157364503|ref|YP_001471270.1| small GTP-binding protein [Thermotoga lettingae TMO] gi|166920104|sp|A8F7S2|DER_THELT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157315107|gb|ABV34206.1| small GTP-binding protein [Thermotoga lettingae TMO] Length = 435 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 8/167 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ-TTRSIVRGIVSEKESQIVFLDTPGIF 81 V + G N GKSTL NR +G + +I T K++ TR I++G+V E+ + DT G+F Sbjct: 2 ATVVIAGRANVGKSTLFNRLIGRRKAI-TEKIEGVTRDIIKGLVVYNETSFLLYDTCGVF 60 Query: 82 NA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + +D M ++ + AD++ VVD + + +++ K + ++++++NK Sbjct: 61 ESTRDPVLLAMRDKAFEAFRKADLILFVVDGRSGITSEDEYVAQQLRKIAKKVLMVINKS 120 Query: 141 DCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + + E+ L KL F E VSA G+ D++L+ + + L Sbjct: 121 ENMSVVEKNLPDIM---KLGFAE-YIPVSAQHGNNIDELLDKITNLL 163 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 18/212 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+L N + + VT TTR V ++ + + +DT G+ Sbjct: 180 IAIVGKPNVGKSSLFNALLNMDRATVTPVPGTTRDPVDEMIEINGKKYILVDTAGMRRKS 239 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + I + TI+ AD+V LV+D+ + + I ++ ++NK Sbjct: 240 RIERKTIEQFSISRTIDTIQSADVVLLVIDATEGVTRQDKRIADLILSSGRAMVCVINKF 299 Query: 141 DCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYL-------CSTLPLAPW 191 D V + +A + ++ FI + SA K G + + N + C +P Sbjct: 300 DLVNVRKKDYEAALFTEMPFINFCRIVFTSAVKKSGLEKLFNAIDEAYESYCRKVPQQLL 359 Query: 192 VYSADQISDLPMFHFTAEITREKLFLHLHKEI 223 A Q LP+ + ++R+ L ++ K+I Sbjct: 360 SKLASQ---LPL--LSPALSRKNLRIYSIKQI 386 >gi|161524642|ref|YP_001579654.1| GTP-binding proten HflX [Burkholderia multivorans ATCC 17616] gi|189350602|ref|YP_001946230.1| GTP-binding protein [Burkholderia multivorans ATCC 17616] gi|221198074|ref|ZP_03571120.1| GTP-binding protein HflX [Burkholderia multivorans CGD2M] gi|221204368|ref|ZP_03577385.1| GTP-binding protein HflX [Burkholderia multivorans CGD2] gi|160342071|gb|ABX15157.1| GTP-binding proten HflX [Burkholderia multivorans ATCC 17616] gi|189334624|dbj|BAG43694.1| GTP-binding protein [Burkholderia multivorans ATCC 17616] gi|221175225|gb|EEE07655.1| GTP-binding protein HflX [Burkholderia multivorans CGD2] gi|221182006|gb|EEE14407.1| GTP-binding protein HflX [Burkholderia multivorans CGD2M] Length = 396 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|90194132|gb|ABD92627.1| ThdF [Mannheimia ruminalis] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 5/135 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILI 136 + +A D ++ I+ +W I AD V L++DS + E +AK + + +I Sbjct: 263 LRDASDEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVI 322 Query: 137 LNKIDCV-KPERLLE 150 NK+D +PE L++ Sbjct: 323 RNKVDLSGEPEGLIQ 337 >gi|46579492|ref|YP_010300.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str. Hildenborough] gi|81830466|sp|Q72D51|MNME_DESVH RecName: Full=tRNA modification GTPase mnmE gi|46448906|gb|AAS95559.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str. Hildenborough] gi|311233307|gb|ADP86161.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris RCH1] Length = 457 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 14/211 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+N +G + +IVT TTR + ++ I DT G+ Sbjct: 223 VVLAGQVNAGKSSLMNALLGRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETG 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + +R+S + AD+V LV D+ + L+ +LL+ R++++ NK D ++ Sbjct: 283 DIVEQEGVRMSRDLVAQADLVLLVTDATQGLQGPELELLRHAGP--ERVLVVFNKTDLLE 340 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 L E ++ V+A G G + ++ + + + A + P Sbjct: 341 GRILPSTPEGC-------RSVHVAAASGDGVESLVTAIRAAVLAATGAGEPEAGELAPNM 393 Query: 205 HFTAEITR-----EKLFLHLHKEIPYSSCVV 230 A + + ++L + +PY C V Sbjct: 394 RQAAALDKAATILDELAGDIRAHVPYDLCGV 424 >gi|206558831|ref|YP_002229591.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia J2315] gi|198034868|emb|CAR50740.1| putative tRNA modification GTPase [Burkholderia cenocepacia J2315] Length = 464 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 14/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D ++ I +WS I+ AD+V ++DS + + + IA R ++ +LNK Sbjct: 288 EDEVERIGIARTWSEIERADVVLHLLDSRTGMTADD----ETIAARFPAGVPVVRVLNKT 343 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D +E L + +SA +G G D + L L +A W A+ + Sbjct: 344 DLTGVPACVEHPAAEGDLTEVH----LSAKRGDGIDMLRAEL---LRIAGWQAGAEGV 394 >gi|90194102|gb|ABD92612.1| ThdF [Actinobacillus capsulatus] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 263 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|90194120|gb|ABD92621.1| ThdF [Actinobacillus pleuropneumoniae serovar 8 str. 405] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 263 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|58617258|ref|YP_196457.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Gardel] gi|58416870|emb|CAI27983.1| Probable GTP-binding protein engA [Ehrlichia ruminantium str. Gardel] Length = 439 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 16/197 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +++VG NAGKST VNR VG IV+ + TTR V + + + +DT G+ Sbjct: 176 ISIVGRPNAGKSTFVNRLVGEDRMIVSSEPGTTRDAVDIEYEYQGQKFILIDTAGMRKKA 235 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + S +I +DIV L++DS ++ + + I ++ +I+ LNK D Sbjct: 236 KITENIELTSVYKSIESINRSDIVILMIDSVYSIEQQDLSIAELIIQKGKAIIIALNKWD 295 Query: 142 CVKPER---LLEQAEIANKLVFIEKTFMVSATKGHGCDDVL-------NYLC---STLPL 188 + E LL NKL F +SA K C+ VL YL ST L Sbjct: 296 VISKEHRLGLLRDIRNYNKLSFDVPIIEISALKNINCNMVLEKSIELYKYLTMRISTPML 355 Query: 189 APWVYSADQISDLPMFH 205 W+ A P+F+ Sbjct: 356 NKWLRFAVDHHRPPLFN 372 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 6/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST+ NR V + +IV++ TR G + +DT G+ + + Sbjct: 4 VAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGV-DYR 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 L++ I+ D++ VVD+ E + + K + K + + +ILI NK + Sbjct: 63 IKLSVLILDQVKLAIEACDVIFFVVDARVERDIKNIEFAKYLRKNTQKPIILIANKCESR 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K ++ E N FI + +SA G D+ + L +P Sbjct: 123 KKCSEVDYLEYFN---FIGPIY-ISAEHNLGMVDLYDALIPFIP 162 >gi|54023981|ref|YP_118223.1| GTP-binding protein EngA [Nocardia farcinica IFM 10152] gi|54015489|dbj|BAD56859.1| putative GTP-binding protein [Nocardia farcinica IFM 10152] Length = 472 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + + + DT G Sbjct: 37 TLAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYEATWAGRRFLVQDTGGWEPD 96 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + R + + AD + LVVD+ +K++ + +IL+ NK+D Sbjct: 97 AKGLQQAVARQAELAMATADAILLVVDATVGATATDEAAVKKLRRSQIPVILVANKVD-- 154 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++ LE A + + + MVSA G G D+L+ + LP P Sbjct: 155 --DQRLEAEAAALWSLGLGEPRMVSAAHGRGTGDLLDDVLEVLPETP 199 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ G + S+V TT V +V F+DT G + Sbjct: 211 VALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVDPVDSLVELGGKIWKFVDTAGLRRKV 270 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA + +R S ++ +++ +++D+ + + ++ +A L+L NK Sbjct: 271 SNASGTEFYASLRTK-SALEASEVAIMLIDASQPITEQDLRVISLVADSGRALVLAFNKW 329 Query: 141 DCVKPERLLE-QAEIANKLVFI 161 D V +R L+ + E+ +LV + Sbjct: 330 DLVDEDRRLQLEKEVDRELVRV 351 >gi|78486532|ref|YP_392457.1| tRNA modification GTPase TrmE [Thiomicrospira crunogena XCL-2] gi|78364818|gb|ABB42783.1| tRNA modification GTPase trmE [Thiomicrospira crunogena XCL-2] Length = 475 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 4/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V ++G NAGKS+L+N G + +IVT TTR IV+ + + LDT G Sbjct: 239 REGMSVVILGRPNAGKSSLLNALSGRESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTAG 298 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + A D+ ++ I+ +W+ I+ AD + ++V ++ + +L+++ + LI NK Sbjct: 299 LREATDAVEQIGIQRAWAAIEEADRILVMVQANEAIHPEDQAILEKMPSHIP-VTLIHNK 357 Query: 140 IDCVK--PE 146 ID ++ PE Sbjct: 358 IDLIEKSPE 366 >gi|333031364|ref|ZP_08459425.1| tRNA modification GTPase mnmE [Bacteroides coprosuis DSM 18011] gi|332741961|gb|EGJ72443.1| tRNA modification GTPase mnmE [Bacteroides coprosuis DSM 18011] Length = 465 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 5/186 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV++ TTR ++ ++ F+DT GI Sbjct: 224 VAIIGETNAGKSTLLNALLNEDKAIVSNIHGTTRDVIEDTMNIGGITFRFIDTAGIRETH 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV V+D+ + I L ++I R S +LIL+ NK + Sbjct: 284 DTIESLGIERTFQKLDQAEIVLWVIDAPTATE-QIQQLAEKIVPRAQSKQLILVFNKSEL 342 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 + +A + +SA + G + + L ++ L P V D I Sbjct: 343 INESERKGLEALAQTHYPSLTSIFISAKEKEGVEQLEKLLTNSANL-PTVTQNDVIV-TN 400 Query: 203 MFHFTA 208 M H+ A Sbjct: 401 MRHYEA 406 >gi|172060766|ref|YP_001808418.1| GTP-binding proten HflX [Burkholderia ambifaria MC40-6] gi|171993283|gb|ACB64202.1| GTP-binding proten HflX [Burkholderia ambifaria MC40-6] Length = 396 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|160882059|ref|YP_001561027.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg] gi|189036198|sp|A9KLX9|MNME_CLOPH RecName: Full=tRNA modification GTPase mnmE gi|160430725|gb|ABX44288.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg] Length = 458 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 15/227 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ +E+ +++ R+ ++G NAGKS+L+N VG + +IVT TTR + Sbjct: 204 ELSELINTSENGRMIKEGIRT---VILGRPNAGKSSLLNLMVGEERAIVTEIAGTTRDTI 260 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 V + +DT GI D KL + S + K AD++ V+D+ L + + Sbjct: 261 EETVFLNGLCLNLIDTAGIRETSDLVEKLGVEKSLKSAKEADLIICVIDASTPLNQDDKE 320 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 +L+ I R + I++LNK D + ++E+ +I L+ + +SA G D L Sbjct: 321 ILEFIKDR--KAIVLLNKSDL---DSVIEEEKI--NLLTNKPILKISAIDQTGIKD-LEQ 372 Query: 182 LCSTLPLAPWVYSADQISDLPMFH----FTAEITREKLFLHLHKEIP 224 + + + D+I M H A+++ E++ + + E+P Sbjct: 373 TITEMFFEGNISFNDEIYITNMRHKNALVEAKVSLEQVIVSIENEMP 419 >gi|86145598|ref|ZP_01063928.1| GTP-binding protein EngA [Vibrio sp. MED222] gi|85836569|gb|EAQ54695.1| GTP-binding protein EngA [Vibrio sp. MED222] Length = 493 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ M S + I AD+V +VD L V I L+++ K S +L++NK+ Sbjct: 64 EEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPS---MLVVNKV 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QIS 199 D + P + A + +E + ++A G G +++ + P A + + + ++S Sbjct: 121 DGIDP----DAASADFWQLGVEDMYQIAAAHGRGVTALIDLALN--PFAEALKAENGEVS 174 Query: 200 DL 201 DL Sbjct: 175 DL 176 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRRK 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N ++ K + + I+ A++V L++D+ + LL +++ +NK D Sbjct: 268 NINETVEKFSVVKTLKAIEDANVVLLLIDARENISDQDLSLLGFALNAGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLDNDVKDRVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|313886089|ref|ZP_07819824.1| ribosome biogenesis GTPase Der [Porphyromonas asaccharolytica PR426713P-I] gi|312924435|gb|EFR35209.1| ribosome biogenesis GTPase Der [Porphyromonas asaccharolytica PR426713P-I] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 13/171 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKSTL NR ++ +IVT + TTR G V+ E +DT G + Sbjct: 2 SNLVAIVGRPNVGKSTLFNRLTRSRQAIVTEEAGTTRDRQYGHVTWCERTFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 + D + + + + ++ AD++ VVD + + DL EIA + + +IL+ Sbjct: 62 LRSDDVFEEEINKQVRIAVEEADLILFVVD----ILNGVTDLDDEIALMLRQTNKPVILV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D + AE + + I + +SA G D+L+++ LP Sbjct: 118 ANKADNFTQHN--DAAEFYS--LGIGDPYPISAINGSSTGDLLDHILELLP 164 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 72/137 (52%), Gaps = 12/137 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS+L+N +G + +IVT + TTR + + +DT GI Sbjct: 179 AIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFAEYDKFNQHFYLVDTAGIRKKGK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ + I++AD+ +++D+ R ++ ++ + I + + L++ +NK Sbjct: 239 VNEDLEYYSVIRAI--RAIENADVCIMLIDATRGIEAQDANIFRVIQRNNKGLVVCVNKW 296 Query: 141 DCVKP-----ERLLEQA 152 D V+ +R +E+A Sbjct: 297 DLVEDKSMPVQRTMEEA 313 >gi|296445792|ref|ZP_06887744.1| GTP-binding proten HflX [Methylosinus trichosporium OB3b] gi|296256620|gb|EFH03695.1| GTP-binding proten HflX [Methylosinus trichosporium OB3b] Length = 462 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 7/170 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R I ++++ DT G + Sbjct: 219 VVALVGYTNAGKSTLFNRLTKAGVLAEDMLFATLDPTLRQIRLPHGAKVLLSDTVGFISD 278 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEI---AKRSSRLILI 136 + R + + AD+V V D SH + + D +L E+ + +R++ + Sbjct: 279 LPTMLITAFRATLEEVMLADVVLHVRDVSHEDWEAQAEDVEAILAELGLSGEAGARILEV 338 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + PERL A A E+ +VSA G G + +L + L Sbjct: 339 WNKIDALDPERLAALAVAAESAQGRERPSLVSALTGEGLEALLERIEQRL 388 >gi|225867922|ref|YP_002743870.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus] gi|225701198|emb|CAW98121.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus] Length = 446 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 15 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDV 74 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + ++ R+++ +IL++NK+D Sbjct: 75 DAPFMEQIKHQAHIAMDEADVIVFVV-SGKEGVTDADEYVSKLLYRTNKPVILVVNKVD- 132 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + + + + + F VS+ G G DVL+ + LP+ V + D I Sbjct: 133 -NPEMRNDIYDFYS--LGLGDPFPVSSVHGIGTGDVLDAIIDNLPVEEIVENDDVI 185 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 12/127 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + +++ Q +DT G+ + Sbjct: 188 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTSFTDESGQAYTMIDTAGMRKSG 247 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 Y K + + I +DIV +V+++ I D K IA + +I+++ Sbjct: 248 KVYENTEKYSVMRAMRAIDRSDIVLMVINAEE----GIRDYDKRIAGFAHEAGKGMIIVV 303 Query: 138 NKIDCVK 144 NK D ++ Sbjct: 304 NKWDTIE 310 >gi|185178903|ref|ZP_02964672.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|195867881|ref|ZP_03079880.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225551179|ref|ZP_03772125.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209162|gb|EDU06205.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|195660458|gb|EDX53716.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225378994|gb|EEH01359.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 442 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+L NR + + SIV + TR + + + + +DT GI ++ Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISS 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 +D+Y + I A+ + +V + + + I +LKE AK ++IL++NK+ Sbjct: 63 EDTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAK-DKKVILVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + K + E+ + K F +SA G G D+L+ L +P+ Sbjct: 122 ESEK--YYFNEGELYS--FGFGKFFKISAEHGIGMGDLLDELVKDMPI 165 Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-- 84 ++G N GKS+L N +G + IV + +TR + S + +DT G+ Sbjct: 179 IIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRRKGKI 238 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 ++ K + + I+ + ++ LV+D K Sbjct: 239 VEAVEKYAVLRTQKAIERSQLILLVLDGSEPFK 271 >gi|159037045|ref|YP_001536298.1| small GTP-binding protein [Salinispora arenicola CNS-205] gi|157915880|gb|ABV97307.1| small GTP-binding protein [Salinispora arenicola CNS-205] Length = 515 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T +R ++ F DT G Sbjct: 277 AVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTIRKATTQDGRHFTFSDTVGFV-- 334 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H+++ R + + AD+V VVD E + +L E+ +L++ Sbjct: 335 RHLPHQIVEAFRSTLEEVAEADLVVHVVDGTHPDPEEQVRAVRAVLAEVGADRLPELLVV 394 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D E LL K ++ E +VSA GHG DD+ + + LP Sbjct: 395 NKTDAADEETLLRL-----KRLWPE-AILVSAHSGHGVDDLRRVVEARLP 438 >gi|257452996|ref|ZP_05618295.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_5R] gi|257466623|ref|ZP_05630934.1| tRNA modification GTPase TrmE [Fusobacterium gonidiaformans ATCC 25563] gi|315917778|ref|ZP_07914018.1| thiophene and furan oxidation protein THDF [Fusobacterium gonidiaformans ATCC 25563] gi|317059536|ref|ZP_07924021.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 3_1_5R] gi|313685212|gb|EFS22047.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 3_1_5R] gi|313691653|gb|EFS28488.1| thiophene and furan oxidation protein THDF [Fusobacterium gonidiaformans ATCC 25563] Length = 457 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + + +IVT TTR I+ +++ K +V +DT GI N D Sbjct: 225 IIGKPNVGKSSLLNSILREERAIVTQVAGTTRDIIEEVINIKGIPLVLVDTAGIRNTTDL 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + + S ++ AD+V V+D+ +EL ++ + + + ++I ILNK D K Sbjct: 285 VENIGVMKSKEFLQKADLVLFVLDASQELSKEDEEIYASL-QENQKVIGILNKTDLEKKI 343 Query: 147 RLLEQAEIAN 156 ++ ++I N Sbjct: 344 QISSLSKIKN 353 >gi|269837313|ref|YP_003319541.1| small GTP-binding protein [Sphaerobacter thermophilus DSM 20745] gi|269786576|gb|ACZ38719.1| small GTP-binding protein [Sphaerobacter thermophilus DSM 20745] Length = 445 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 11/171 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG + +IV TTR + S +DT G+ + Sbjct: 5 LVAIVGRPNTGKSTLFNRLVGERRAIVEDLPGTTRDRIYAEASWGGVTFDVVDTGGLLSE 64 Query: 84 KDSYHKLMIRLSWST-------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 ++ ++ +T I+ AD++ +VD + H++ I + ++L Sbjct: 65 QEIERASAAEIAQATQEQAELAIEQADVIVFMVDGQAGVTAGDHEVADLIRRAKRPVLLA 124 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +NK + R ++ A + + + + +SA G G D+L+ + + LP Sbjct: 125 VNKAEA----RNIQDAAVEFYELGLGDPYPISALHGTGVGDLLDAIIAHLP 171 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS L+N +G IV+ TTR V ++ +++V +DT GI Sbjct: 183 SIAIVGRPNVGKSALLNALLGQSRQIVSSIPGTTRDAVDTEITWAGNRVVLVDTAGIRRP 242 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + S ++ AD+ LV+D+ + IA+ +I+ +NK Sbjct: 243 GRIERGIEKYSVLRSTRAVERADVAVLVIDATEPFTAQDQAIAGAIAEAKKGIIVAVNKW 302 Query: 141 DCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 D V+ + E+A A + +SA G + V+ Sbjct: 303 DLVEKDHRTMKEFTEKAREAFHFISYAPIVFISALTGQRVNQVM 346 >gi|171920931|ref|ZP_02932078.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|225550855|ref|ZP_03771804.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903162|gb|EDT49451.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|225380009|gb|EEH02371.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 442 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+L NR + + SIV + TR + + + + +DT GI ++ Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISS 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 +D+Y + I A+ + +V + + + I +LKE AK ++IL++NK+ Sbjct: 63 EDTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAK-DKKVILVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + K + E+ + K F +SA G G D+L+ L +P+ Sbjct: 122 ESEK--YYFNEGELYS--FGFGKFFKISAEHGIGMGDLLDELVKDMPI 165 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-- 84 ++G N GKS+L N +G + IV + +TR + S + +DT G+ Sbjct: 179 IIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRDSIDNDFSYHNKKYTIIDTAGVRRKGKI 238 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 ++ K + + I+ + ++ LV+D K Sbjct: 239 VEAVEKYAVLRTQKAIERSQLILLVLDGSEPFK 271 >gi|189425185|ref|YP_001952362.1| GTP-binding protein EngA [Geobacter lovleyi SZ] gi|238692111|sp|B3E421|DER_GEOLS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189421444|gb|ACD95842.1| small GTP-binding protein [Geobacter lovleyi SZ] Length = 449 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 6/178 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 VA+VG N GKSTL NR VG + +IV TR +V + + +DT G Sbjct: 5 VAIVGRPNVGKSTLFNRIVGERRAIVDDMPGVTRDRNYAVVERYDKPFILVDTGGFEPVT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D + M S ++ AD++ ++D+ + L +++ + + + ++NK+D Sbjct: 65 EDRMLQQMREQSLLAMEEADVILFLMDAKQGLTPADNEVASMLRRVDKPVFYVVNKVDGE 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 K E E AE + I+ +SA G D+L+ + + LP P + D+++++ Sbjct: 125 KVEN--EAAEFY--ALGIDNMHTISAAHNRGIRDLLDEIMALLPDEP-LPGEDEVTNI 177 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+LVNR +G + + TTR V + + + +DT GI Sbjct: 177 IAVVGRPNVGKSSLVNRLLGFERVVANPVAGTTRDSVDTFFTCNKKRYCLIDTAGIRRKG 236 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + KL + + +I+ AD+ +V+++ + + + + + ++NK D Sbjct: 237 KTSQKLEKYSVVDALKSIERADVALIVLNAEDGITEQDKHIAGYVYEAGRACVFVVNKWD 296 Query: 142 CVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGH 173 ++ + + +EQ + K + VSA G Sbjct: 297 TLEKDNKTIGKFVEQIQYEFKFLAFAPIVFVSARTGQ 333 >gi|90194074|gb|ABD92598.1| ThdF [Avibacterium gallinarum] Length = 435 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +A D ++ IR +W I+ AD + L++DS Sbjct: 263 LRDATDEVERIGIRRAWDEIEQADRIILMLDS 294 >gi|107024092|ref|YP_622419.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia AU 1054] gi|116691178|ref|YP_836801.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia HI2424] gi|123371157|sp|Q1BSF9|MNME_BURCA RecName: Full=tRNA modification GTPase mnmE gi|205829125|sp|A0KBN1|MNME_BURCH RecName: Full=tRNA modification GTPase mnmE gi|105894281|gb|ABF77446.1| tRNA modification GTPase trmE [Burkholderia cenocepacia AU 1054] gi|116649267|gb|ABK09908.1| tRNA modification GTPase trmE [Burkholderia cenocepacia HI2424] Length = 464 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 14/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D ++ I +WS I+ AD+V ++DS + + + IA R ++ +LNK Sbjct: 288 EDEVERIGIARTWSEIERADVVLHLLDSRTGMTADD----ETIAARFPAGVPVVRVLNKT 343 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D +E L + +SA +G G D + L L +A W A+ + Sbjct: 344 DLTGVPACVEHPAAEGDLTEVH----LSAKRGDGIDMLRAEL---LRIAGWQAGAEGV 394 >gi|326571815|gb|EGE21821.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC7] Length = 466 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR + + + DT G+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE--------------LKVNIHDLLKEIAKRS 130 D K+ I+ ++ I+ AD++ +V D E + ++ D++++ Sbjct: 283 DHVEKIGIKRAFDAIRQADVLMMVYDVTTETDPLALADQLFCEGVTEDVGDIIRQ----- 337 Query: 131 SRLILILNKIDCVKPERLLE---QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +LIL+ NK D + + +L+ + + A KLV+ VS G G D+++ L + Sbjct: 338 -KLILVANKSDLLISKPVLQVSCETKSAPKLVY------VSCETGEGLDELIEILTQKVG 390 Query: 188 LAP 190 P Sbjct: 391 FHP 393 >gi|309804055|ref|ZP_07698136.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d] gi|308163823|gb|EFO66089.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d] Length = 461 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG A+VG N GKS+L+N + +IVT+ TTR + VS K + +DT G Sbjct: 222 RSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L+++S EL LL E+ + R I+ILNK Sbjct: 282 IRQTDDIVEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLL-ELTQDKKR-IVILNK 339 Query: 140 IDCV 143 D V Sbjct: 340 ADQV 343 >gi|227499570|ref|ZP_03929677.1| GTPase [Anaerococcus tetradius ATCC 35098] gi|227218329|gb|EEI83583.1| GTPase [Anaerococcus tetradius ATCC 35098] Length = 437 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V LVG TN GKSTL NR VG + SI TR + V + + + +DT G+ Sbjct: 5 IVTLVGRTNVGKSTLFNRLVGKRKSITEDISGVTRDRIVDKVEWQNKEFLLVDTGGL--- 61 Query: 84 KDSYHKLMIRLSWSTIKHA----DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 S ++M S ++ A D+V VVD + D+ E+ K + +I++ NK Sbjct: 62 DISNKEIMNAEVKSQVEKALLETDLVLFVVDGREGPNPHDVDIANEVRKYNKPVIIVANK 121 Query: 140 IDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ID K P+ + + + + M+SA + G D+L+ + S + + Sbjct: 122 IDSFKMPDEIYDFYQFG-----FDDLLMISAEQSKGLGDLLDKIVSYIDFEAY 169 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++D +R +A++G NAGKS+LVN + + IVT TTR V + + V + Sbjct: 172 IEDETR---IAIIGKPNAGKSSLVNLLLNEERMIVTDIAGTTRDAVDSYWTYNGNNYVLI 228 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH 112 DT G+ K+S + ++ + A+I ++D++ Sbjct: 229 DTAGLRRKSKVKESVEYYANQRTFDAVDSAEICLFLIDAN 268 >gi|90194126|gb|ABD92624.1| ThdF [Haemophilus parasuis] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGKPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH 112 + A D K+ I+ +W I+ AD V L++DS+ Sbjct: 263 LREASDEVEKIGIKRAWDEIEQADHVLLMIDSN 295 >gi|90194086|gb|ABD92604.1| ThdF [Actinobacillus minor NM305] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVMPGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + +A D ++ I+ +W I AD V L++DS + K + L ++ + + + Sbjct: 263 LRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKTEWAEFLAKLPQNIP-VTV 321 Query: 136 ILNKIDCVKPERLLEQ 151 I NK+D LEQ Sbjct: 322 IRNKVDLSGESEGLEQ 337 >gi|152998479|ref|YP_001343314.1| tRNA modification GTPase TrmE [Marinomonas sp. MWYL1] gi|205415779|sp|A6W3V0|MNME_MARMS RecName: Full=tRNA modification GTPase mnmE gi|150839403|gb|ABR73379.1| tRNA modification GTPase TrmE [Marinomonas sp. MWYL1] Length = 459 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G+ ++ Sbjct: 224 VVIAGRPNAGKSSLLNALSGKESAIVTNIEGTTRDVLREHIHLDGMPLHIIDTAGLRDSP 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I+ +W I AD + ++VDS + +++ E ++ + L L+ NK+D Sbjct: 284 DEVERIGIQRAWDEISKADRILMMVDSQSIDSKDPNEIWPEFMEKLGDTKHLTLVRNKVD 343 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K +E V +SA G G D+ +L + + Sbjct: 344 LTKEGTGIET-------VSGVPVVSLSAKTGEGVTDLTEHLKAVM 381 >gi|78357435|ref|YP_388884.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552067|sp|Q30YQ7|MNME_DESDG RecName: Full=tRNA modification GTPase mnmE gi|78219840|gb|ABB39189.1| tRNA modification GTPase trmE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 468 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+N +G K +IVT TTR + ++ + +DT G+ Sbjct: 229 VVLAGQVNAGKSSLLNALLGRKRAIVTDVPGTTRDFLEESITLDGLAVRLVDTAGLRETG 288 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + +R+S AD+V LVVDS L H+ A + ++++LNK D Sbjct: 289 DIVEQEGVRMSRDLAAQADLVLLVVDSR--LGTGPHEQELMAAMEAGSVLVVLNKTDAAT 346 Query: 145 PERL 148 + L Sbjct: 347 EDEL 350 >gi|254246829|ref|ZP_04940150.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184] gi|124871605|gb|EAY63321.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184] Length = 464 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 14/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D ++ I +WS I+ AD+V ++DS + + + IA R ++ +LNK Sbjct: 288 EDEVERIGIARTWSEIERADVVLHLLDSRTGMTADD----ETIAARFPAGVPVVRVLNKT 343 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D +E L + +SA +G G D + L L +A W A+ + Sbjct: 344 DLTGVPACVEHPAAEGDLTEVH----LSAKRGDGIDMLRAEL---LRIAGWQAGAEGV 394 >gi|254248076|ref|ZP_04941397.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184] gi|124872852|gb|EAY64568.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184] Length = 390 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 177 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 236 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 237 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 294 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 295 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 348 >gi|326563099|gb|EGE13372.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 12P80B1] Length = 466 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR + + + DT G+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE--------------LKVNIHDLLKEIAKRS 130 D K+ I+ ++ I+ AD++ +V D E + ++ D++++ Sbjct: 283 DHVEKIGIKRAFDAIRQADVLIMVYDVTTETDPLALADQLFCEGVTEDVGDIIRQ----- 337 Query: 131 SRLILILNKIDCVKPERLLE---QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +LIL+ NK D + + +L+ + + A KLV+ VS G G D+++ L + Sbjct: 338 -KLILVANKSDLLISKPVLQVSCETKSAPKLVY------VSCETGEGLDELIEILTQKVG 390 Query: 188 LAP 190 P Sbjct: 391 FHP 393 >gi|315634810|ref|ZP_07890092.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393] gi|315476362|gb|EFU67112.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393] Length = 451 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 19/138 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI---------- 134 D ++ I +W+ I+ AD + L++DS D +++AK S + Sbjct: 277 DEVERIGISRAWNEIEQADRILLMLDS--------SDSEQDLAKVRSEFLAKLPNNIPVT 328 Query: 135 LILNKIDCV-KPERLLEQ 151 +I NK D + ERL EQ Sbjct: 329 IIRNKADLTGETERLYEQ 346 >gi|261213270|ref|ZP_05927552.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341] gi|260837544|gb|EEX64247.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341] Length = 453 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D+ K+ I +W I+ AD V +VD + D+ + R + + +I NK D Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDRLPENIGITVIRNKAD 337 Query: 142 CV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +P + N+ I +SA GHG D + +L Sbjct: 338 QTGEPLGICH----VNQPTLIR----LSAKTGHGVDALRQHL 371 >gi|225873776|ref|YP_002755235.1| tRNA modification GTPase TrmE [Acidobacterium capsulatum ATCC 51196] gi|225794461|gb|ACO34551.1| tRNA modification GTPase TrmE [Acidobacterium capsulatum ATCC 51196] Length = 486 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 4/141 (2%) Query: 12 HKDFVQDN-SRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 H+ F + SG +A+VG N GKS+L NR V + +IVT TTR +V VS Sbjct: 220 HRSFARGRLVHSGLTLAIVGRPNVGKSSLFNRLVERERAIVTAMPGTTRDLVSERVSLGG 279 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 + +DT G+ D + I+ S + A +V LVV+ + L L +A R Sbjct: 280 IPLELVDTAGLREGADEAETIGIQKSREALADAHLVMLVVEGNTPLSEEEQALAASLAGR 339 Query: 130 SSRLILILNKIDCVKPERLLE 150 R +L+ NK D V+ + LL+ Sbjct: 340 --RALLVRNKSDLVQQKSLLD 358 >gi|304398581|ref|ZP_07380453.1| ribosome-associated GTPase EngA [Pantoea sp. aB] gi|304353792|gb|EFM18167.1| ribosome-associated GTPase EngA [Pantoea sp. aB] Length = 496 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + V +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRA 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+H + LL I L++++NK D Sbjct: 270 KISDTVEKFSVIKTLQAIEDANVVMLVIDAHAGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E E + +L FI+ + +SA G G ++ Y CST Sbjct: 330 GLSQEVRDEVKETLDFRLGFIDFARIHFISALHGSGVGNLFESITEAYDCST 381 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ + + K + R L+ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGMMAADQQIAKHLRSRQKATFLVANKTDGM 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + ++A+ G G ++ L PW+ Sbjct: 124 DP----DQAIVDFYSLGLGEIHAIAASHGRGVSSLIEE-----ALLPWM 163 >gi|171316351|ref|ZP_02905571.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5] gi|171098480|gb|EDT43282.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5] Length = 464 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 15/202 (7%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLARIREQLVHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D ++ I +WS I+ AD+V ++DS + Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSEIERADVVLHLLDSRTGMT 320 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +++ ++ +LNK D +E L + +SA +G G D Sbjct: 321 AE-DEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPSAEGDLTEVH----LSAKRGDGID 375 Query: 177 DVLNYLCSTLPLAPWVYSADQI 198 + L L +A W A+ + Sbjct: 376 MLRAEL---LRIAGWQAGAEGV 394 >gi|90194122|gb|ABD92622.1| ThdF [Actinobacillus indolicus] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGKPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH 112 + A D K+ I+ +W I+ AD V L++DS+ Sbjct: 263 LREASDEVEKIGIKRAWDEIEQADHVLLMIDSN 295 >gi|77463363|ref|YP_352867.1| putative GTP-binding protein [Rhodobacter sphaeroides 2.4.1] gi|77387781|gb|ABA78966.1| Putative GTP-binding protein [Rhodobacter sphaeroides 2.4.1] Length = 416 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 14/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +RG+ +++ DT G + Sbjct: 197 IVALVGYTNAGKSTLFNRMTGADVLAKDMLFATLDPTMRGVTLPSGRKVILSDTVGFISD 256 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHREL---KVNIHDLLKEIA-KRSSRLILILN 138 + R + + AD++ V D +H E ++ ++L+ + K ++ + + N Sbjct: 257 LPTQLVAAFRATLEEVLEADLILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEVWN 316 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K+D V+ E+LL QA + E F +SA G G D+L + +T Sbjct: 317 KLDLVEGAAHEQLLAQAAKS------ETIFALSALTGEGLPDLLEAVSATF 361 >gi|53802988|ref|YP_115285.1| GTPase family protein [Methylococcus capsulatus str. Bath] gi|81823578|sp|Q603B5|DER_METCA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|53756749|gb|AAU91040.1| GTPase family protein [Methylococcus capsulatus str. Bath] Length = 463 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 6/162 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTLVNR +G + +V + TTR + + + +DT GI Sbjct: 179 IAVVGRPNVGKSTLVNRILGEERVVVYDQPGTTRDSIYIPFERRGERYTLIDTAGIRRRA 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + S+ I+ A +V +VD+ L +LL + + L++ NK D Sbjct: 239 RVNEGVEKFSVIKSFQAIEKAHVVIYLVDASEGLTDQDANLLGMVLEIGRGLLIGFNKWD 298 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 ++PE R + +I KL F+E K + +SA G G +++ Sbjct: 299 GLEPEQREKVKRQIDVKLPFLEFAKKYFISALHGTGVGVLMD 340 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 10/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G TN GKSTL N + ++V TR G V E +DT GI A Sbjct: 4 VVALIGRTNVGKSTLFNYLTRTRDALVADFPGLTRDRQYGRVQRGERDYFVVDTGGIIEA 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 + ++ + AD++ +VD H + I D L+ I K ++L+ NKI Sbjct: 64 AEGIDDQAMKQVDHVLDEADVILFLVDVHAGMTAGDELIADRLRRINK---PVLLVANKI 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + L+ AE + + ++SA G G +L + + LP Sbjct: 121 DGTQA--LIAGAEF--HAFGLGEPLLISAAHGTGVHALLERVEALLP 163 >gi|15674224|ref|NP_268399.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. lactis Il1403] gi|14195270|sp|Q9CDH8|MNME_LACLA RecName: Full=tRNA modification GTPase mnmE gi|12725311|gb|AAK06340.1|AE006453_4 GTP-binding protein ThdF [Lactococcus lactis subsp. lactis Il1403] gi|326407874|gb|ADZ64945.1| tRNA modification GTPase [Lactococcus lactis subsp. lactis CV56] Length = 455 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR ++ + + +DT G Sbjct: 220 REGLKTAIIGRPNVGKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D + + S + AD+V LV+D+ EL +LL E++K S+R++L LNK Sbjct: 280 IRETDDLVEAIGVERSKKALAEADLVLLVLDASNELTDKDLELL-ELSKNSNRIVL-LNK 337 Query: 140 IDCVKPERL 148 D PE++ Sbjct: 338 TDL--PEKI 344 >gi|126462218|ref|YP_001043332.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029] gi|126103882|gb|ABN76560.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029] Length = 447 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 14/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +RG+ +++ DT G + Sbjct: 228 IVALVGYTNAGKSTLFNRMTGADVLAKDMLFATLDPTMRGVTLPSGRKVILSDTVGFISD 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHREL---KVNIHDLLKEIA-KRSSRLILILN 138 + R + + AD++ V D +H E ++ ++L+ + K ++ + + N Sbjct: 288 LPTQLVAAFRATLEEVLEADLILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEVWN 347 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K+D V+ E+LL QA + E F +SA G G D+L + +T Sbjct: 348 KLDLVEGAAHEQLLAQAAKS------ETIFALSALTGEGLPDLLEAVSATF 392 >gi|325524781|gb|EGD02755.1| GTP-binding proten HflX [Burkholderia sp. TJI49] Length = 396 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 182 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 241 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 242 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 299 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 300 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|324329435|gb|ADY24695.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar finitimus YBT-020] Length = 458 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 7/143 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQAEIANKLV 159 D + ER++E A N+++ Sbjct: 336 TDLPQAIDMERVIELAA-GNRII 357 >gi|322372979|ref|ZP_08047515.1| tRNA modification GTPase TrmE [Streptococcus sp. C150] gi|321278021|gb|EFX55090.1| tRNA modification GTPase TrmE [Streptococcus sp. C150] Length = 456 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 220 REGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S ++ AD+V LV+++ L LL +I++ S+R+IL LNK Sbjct: 280 IRDTDDVVEKIGVERSKKALEEADLVLLVLNNSEPLTEQDRTLL-DISQNSNRIIL-LNK 337 Query: 140 IDCVKPERLLEQAE 153 D + +L E E Sbjct: 338 TDLPQAIQLEELPE 351 >gi|315613122|ref|ZP_07888032.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296] gi|315314684|gb|EFU62726.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296] Length = 471 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 235 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 294 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 295 IRDTDDIVEQIGVERSKKALKEADLVLLVLNASDPLTAQDRQLL-EISQDTNRIIL-LNK 352 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ ++ I Sbjct: 353 TDL--PE-AIETSELPEDVIRI 371 >gi|206975796|ref|ZP_03236707.1| tRNA modification GTPase TrmE [Bacillus cereus H3081.97] gi|217962976|ref|YP_002341554.1| tRNA modification GTPase TrmE [Bacillus cereus AH187] gi|222098961|ref|YP_002533019.1| tRNA modification gtpase trme [Bacillus cereus Q1] gi|229142233|ref|ZP_04270757.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST26] gi|229199692|ref|ZP_04326335.1| tRNA modification GTPase mnmE [Bacillus cereus m1293] gi|206745890|gb|EDZ57286.1| tRNA modification GTPase TrmE [Bacillus cereus H3081.97] gi|217065834|gb|ACJ80084.1| tRNA modification GTPase TrmE [Bacillus cereus AH187] gi|221243020|gb|ACM15730.1| tRNA modification GTPase TrmE [Bacillus cereus Q1] gi|228583787|gb|EEK41962.1| tRNA modification GTPase mnmE [Bacillus cereus m1293] gi|228641251|gb|EEK97558.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST26] Length = 458 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER++E A Sbjct: 336 TDLPQAIDMERVIELA 351 >gi|307706532|ref|ZP_07643339.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321] gi|307617987|gb|EFN97147.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321] Length = 457 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQETNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ ++ I Sbjct: 339 TDL--PEA-IETSELPEDVIRI 357 >gi|165976918|ref|YP_001652511.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251175|ref|ZP_07337358.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252998|ref|ZP_07339152.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248533|ref|ZP_07530550.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250764|ref|ZP_07532696.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253139|ref|ZP_07535019.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307257560|ref|ZP_07539322.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|205829051|sp|B0BR82|MNME_ACTPJ RecName: Full=tRNA modification GTPase mnmE gi|165877019|gb|ABY70067.1| tRNA modification GTPase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648130|gb|EFL78332.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649975|gb|EFL80148.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854956|gb|EFM87142.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857200|gb|EFM89324.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859382|gb|EFM91415.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863936|gb|EFM95857.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 452 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 212 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 271 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D K+ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 272 LREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 330 Query: 136 ILNKIDC 142 I NK+D Sbjct: 331 IRNKVDL 337 >gi|154503056|ref|ZP_02040116.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149] gi|153796297|gb|EDN78717.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149] Length = 458 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 5/128 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N G + +IVT TTR ++ + + + +DT GI + +D Sbjct: 223 IVGKPNAGKSSLLNVLSGRERAIVTDIEGTTRDVLEEQIHLQGLSLNIIDTAGIRDTEDV 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID---CV 143 K+ + + K AD+V VVD+ R L N +L + + + I++LNK D V Sbjct: 283 IEKMGVEKAKEYAKSADLVIYVVDASRSLDENDQKILNLVLDK--KAIILLNKTDLETVV 340 Query: 144 KPERLLEQ 151 E L EQ Sbjct: 341 SKEMLAEQ 348 >gi|90408840|ref|ZP_01216982.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3] gi|90310067|gb|EAS38210.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3] Length = 455 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N VGA +IVT TTR ++R + + +DT G Sbjct: 215 RDGMKVVIAGRPNAGKSSLLNSLVGADRAIVTEIAGTTRDVMREYIHIDGMPLHIIDTAG 274 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH----DLLKEIAKRSSRLIL 135 + + D K+ I +W IK AD V ++D+ + + D +K++ + S L + Sbjct: 275 LRESADEVEKIGIERAWKEIKTADRVLFMLDATTTDSTDPYAIWPDFMKQLPE-SVGLTV 333 Query: 136 ILNKIDCVKPERLLEQA 152 + NK D L+++ Sbjct: 334 VRNKADLTGESVLVKEG 350 >gi|313114942|ref|ZP_07800438.1| ribosome-associated GTPase EngA [Faecalibacterium cf. prausnitzii KLE1255] gi|310622735|gb|EFQ06194.1| ribosome-associated GTPase EngA [Faecalibacterium cf. prausnitzii KLE1255] Length = 447 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 4/175 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ G +++IV TR + + +DT GI A Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWNGHDFLLVDTGGIEPKA 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M + I AD + +VVD L D+ + + +IL +NK D V Sbjct: 66 TEGILAHMREQAQIAIDTADCIIMVVDVRDGLTAADEDVAHMLRRSHKPIILAVNKCDKV 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + +E E N + ++ +S+ GHG D+L+ +C+ L + V D+I Sbjct: 126 G-DAPMEMYEFYN--LGFDEVMPISSVHGHGTGDLLDAVCAHLDFSETVVEEDRI 177 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+L NR +G IV ++ TTR + V + +F DT G+ Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N D + M+ + + ++ + + ++VD+ + + I+++NK D Sbjct: 239 NITDGLERYMVVRALAAVERSRVALILVDATVGFTEQDSKVAGYAHDQGKACIIVVNKWD 298 Query: 142 CVK 144 V+ Sbjct: 299 AVE 301 >gi|283836140|ref|ZP_06355881.1| hypothetical protein CIT292_10562 [Citrobacter youngae ATCC 29220] gi|291068330|gb|EFE06439.1| tRNA modification GTPase TrmE [Citrobacter youngae ATCC 29220] Length = 454 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPANIWPDF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L + + LV +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITGETLGLSEVN-GHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|261252182|ref|ZP_05944755.1| GTP-binding protein EngA [Vibrio orientalis CIP 102891] gi|260935573|gb|EEX91562.1| GTP-binding protein EngA [Vibrio orientalis CIP 102891] Length = 495 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 13/195 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ M S + I AD+V +VD L + I + L++I K S +L++NK+ Sbjct: 64 EEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDIAISNHLRKIEKPS---MLVVNKV 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + + A + +E + ++A G G +++ + + +I D Sbjct: 121 DGIDA----DAASADFWQLGVENMYQIAAAHGRGVGALIDRALNPFAEKMAEEAKGEIED 176 Query: 201 LPMFHFTAEITREKL 215 L F ++ EKL Sbjct: 177 LTEFE---DLDEEKL 188 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ K Sbjct: 209 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRK 268 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 269 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 328 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 329 GLDTDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 365 >gi|42784680|ref|NP_981927.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 10987] gi|81408275|sp|Q72WU3|MNME_BACC1 RecName: Full=tRNA modification GTPase mnmE gi|42740612|gb|AAS44535.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 10987] Length = 458 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 7/143 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQAEIANKLV 159 D + ER++E A N+++ Sbjct: 336 TDLPQAIDMERVIELAA-GNRII 357 >gi|256751460|ref|ZP_05492338.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus CCSD1] gi|256749679|gb|EEU62705.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus CCSD1] Length = 462 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 222 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ +I +LNK Sbjct: 282 IRDTDELVEKIGVTKSKEVLAEADLILFVLDASRELTKEDYEIFDILTGKN--IIFVLNK 339 Query: 140 IDCVK 144 ID K Sbjct: 340 IDLPK 344 >gi|205829220|sp|Q31DJ0|MNME_THICR RecName: Full=tRNA modification GTPase mnmE Length = 451 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 4/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V ++G NAGKS+L+N G + +IVT TTR IV+ + + LDT G Sbjct: 215 REGMSVVILGRPNAGKSSLLNALSGRESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTAG 274 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + A D+ ++ I+ +W+ I+ AD + ++V ++ + +L+++ + LI NK Sbjct: 275 LREATDAVEQIGIQRAWAAIEEADRILVMVQANEAIHPEDQAILEKMPSHIP-VTLIHNK 333 Query: 140 IDCVK--PE 146 ID ++ PE Sbjct: 334 IDLIEKSPE 342 >gi|78185703|ref|YP_378137.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9902] gi|123580994|sp|Q3AVY3|MNME_SYNS9 RecName: Full=tRNA modification GTPase mnmE gi|78169997|gb|ABB27094.1| tRNA modification GTPase trmE [Synechococcus sp. CC9902] Length = 451 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+NR + +IVT TTR ++ + I +DT GI Sbjct: 225 VALVGRPNVGKSSLLNRLSRRERAIVTELPGTTRDLLESEIVLDGVPITLMDTAGIRATN 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D+ +L I S + AD+V L+VD H LL I R +++ NK D Sbjct: 285 DAVEQLGIARSEEALISADVVVLIVDGHAGWTETDAQLLARIPNDVPR-VVVANKSDLDG 343 Query: 145 P 145 P Sbjct: 344 P 344 >gi|84387629|ref|ZP_00990646.1| GTP-binding protein EngA [Vibrio splendidus 12B01] gi|84377474|gb|EAP94340.1| GTP-binding protein EngA [Vibrio splendidus 12B01] Length = 493 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ M S + I AD+V +VD L V I L+++ K S +L++NK+ Sbjct: 64 EEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPS---MLVVNKV 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QIS 199 D + P + A + +E + ++A G G +++ + P A + + + ++S Sbjct: 121 DGIDP----DAASADFWQLGVEDMYQIAAAHGRGVTALIDLALN--PFAEALKAENGEVS 174 Query: 200 DL 201 DL Sbjct: 175 DL 176 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRRK 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N ++ K + + I+ A++V L++D+ + LL +++ +NK D Sbjct: 268 NINETVEKFSVVKTLKAIEDANVVLLLIDARDNISDQDLSLLGFALNAGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLDSDVKDRVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|332296332|ref|YP_004438255.1| small GTP-binding protein [Thermodesulfobium narugense DSM 14796] gi|332179435|gb|AEE15124.1| small GTP-binding protein [Thermodesulfobium narugense DSM 14796] Length = 418 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV-RGIVSEKESQIVFLDTPGIFNA 83 +AL+G TN GKS+ +N G VSI++ TT +V + + ++FLDT G F+ Sbjct: 12 IALLGRTNVGKSSFLNMITGQDVSIISSIPGTTTDVVEKAMELLPIGPVLFLDTAG-FDD 70 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + L ++ +++ AD+ L+++ ++LKE KR LI I+NKID Sbjct: 71 KSTLANLRLKKTYNVFNRADVAVLLLEPEVWTDYE-EEILKETQKREIPLIAIINKIDLK 129 Query: 144 KP 145 +P Sbjct: 130 EP 131 >gi|323706096|ref|ZP_08117665.1| ribosome-associated GTPase EngA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534540|gb|EGB24322.1| ribosome-associated GTPase EngA [Thermoanaerobacterium xylanolyticum LX-11] Length = 439 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 V +VG N GKSTL N+ G ++SIV + TR + + + + +DT G+ + Sbjct: 5 MVGIVGRPNVGKSTLFNKITGQRISIVEDQPGVTRDRIYFETEWMDKRFILVDTGGLEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D + + + +K D++ V+D + D+ + K +++L+LNK+D Sbjct: 65 SEDEFFSKIKMQVEAALKTVDLILFVIDGKEGVSPVDEDIAAMLRKSRKKVLLVLNKVDN 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E + + + +L F E +SA+ G G D+L+ + +P Sbjct: 125 FK-EMPISYYD-SMRLGFGE-PIAISASNGLGIGDLLDEVIENIP 166 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 ++ +G N GKS+LVN+ +G + +IV+ TTR + + + + V +DT G+ Sbjct: 179 ISFIGKPNVGKSSLVNKILGEERAIVSDIPGTTRDALDTYFEKDDRKYVIIDTAGMRKKG 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D + + + + I +DI LV+D+ + +++ +I+ +NK D Sbjct: 239 RIEDKIERYSVLRALAAIDRSDICILVIDATEGPTEQDTKIAGYAFEQNKAMIIAVNKWD 298 Query: 142 CVK 144 ++ Sbjct: 299 LIE 301 >gi|282900427|ref|ZP_06308377.1| Small GTP-binding protein domain protein [Cylindrospermopsis raciborskii CS-505] gi|281194740|gb|EFA69687.1| Small GTP-binding protein domain protein [Cylindrospermopsis raciborskii CS-505] Length = 453 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N FVG + +IV+ TTR + ++ + +DT GI K Sbjct: 179 VAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTIDTLIEREGQAYRLIDTAGIRKKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I ++ I+ AD+V LV+D+ + L I + I+++NK D Sbjct: 239 HVEYGTEFFSINRAFKAIRRADVVLLVLDALDGVTEQDQKLAGRIVEDGRACIIVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 V+ + + + +L F E T VSA G + +L+ Sbjct: 299 VVEKDSYTIYDHEKSLEARLHFTEWADTIFVSAITGQRVEKILD 342 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKST VNR G + +IV + TR + + + +DT G +FN Sbjct: 6 VAIIGRPNVGKSTFVNRLAGDQTAIVHDEPGVTRDRTYRPAFWQNREFLVVDTGGLVFND 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + + + + A VVD L ++ + + ++ +L +NK C Sbjct: 66 DTEFLPLIRQQAITALSEACAAIFVVDGQTGLTPADEEIAEWLRQQPVPTLLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P++ + QA +L E + +SA G G D+L+ L +P Sbjct: 124 SPDQGIIQASEFWELGLGEP-YPISAIHGSGTGDLLDDLIQYIP 166 >gi|169348409|ref|ZP_02866347.1| hypothetical protein CLOSPI_00124 [Clostridium spiroforme DSM 1552] gi|169293878|gb|EDS76011.1| hypothetical protein CLOSPI_00124 [Clostridium spiroforme DSM 1552] Length = 434 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 14/182 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G VA+VG N GKST+ NR VG ++SIV TR + S + +DT GI Sbjct: 2 AGVVAIVGRANVGKSTIFNRIVGERISIVEDIAGVTRDRIYATASWLTKEFRLIDTGGI- 60 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 KD+ I++ I+ AD++ VV+ + + + + K ++L +NKI Sbjct: 61 ELKDASFTTQIKMQAEIAIEEADLIIFVVNGREGVTQEDEYVARLLQKNKKPILLAVNKI 120 Query: 141 DCVKPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D + A I + F I VS + G G D+L+ + L ++ D Sbjct: 121 D--------DGAFINDIYDFYSLGIGDPIPVSGSHGIGIGDLLDEVIKKLDFTEEEFAED 172 Query: 197 QI 198 +I Sbjct: 173 EI 174 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 7/146 (4%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 ++F +D R +++G N GKS+L N +G + IV++ TTR + + + + Sbjct: 166 EEEFAEDEIR---FSIIGRPNVGKSSLTNSILGEERVIVSNIEGTTRDAIDTVFEKDGQK 222 Query: 72 IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +DT G+ Y K + + S+I+ +D++ +V+D R + + + Sbjct: 223 YRVIDTAGMRKKGKIYENVEKYSVLRALSSIEKSDVIVVVIDGERGVIEQDKHVAGYAHE 282 Query: 129 RSSRLILILNKIDCV-KPERLLEQAE 153 +IL++NK D V K E+ +++ E Sbjct: 283 AGKGVILVVNKWDLVEKDEKTMQKKE 308 >gi|167587873|ref|ZP_02380261.1| tRNA modification GTPase TrmE [Burkholderia ubonensis Bu] Length = 464 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 21/205 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D ++ I +WS I+ AD+V ++D+ + Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSEIERADVVLHLLDARGGMT 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 + + IA R ++ +LNK D + L + +SA +G Sbjct: 321 ADD----EAIAARFPAGVPVVRVLNKTDLTGAPASVAHPAAQGDLTEVR----LSAKRGD 372 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 373 GIDLLRGEL---LRIAGWQAGAEGV 394 >gi|281491251|ref|YP_003353231.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147] gi|281374992|gb|ADA64510.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147] Length = 436 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VVD + + + + I R+ + +IL++NK+D Sbjct: 65 DEPFMTEIRAQAEIAMTEADVIITVVDGETGI-TDADEAVANILYRTDKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PER +E + + + + + VSA G G DVL+ + LP Sbjct: 123 -NPERRMEIFDFYS--LGLGDPYPVSAVHGIGTGDVLDAIVQNLP 164 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR +I V ++ + V +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +DIV +V+++ RE + I E K +++++N Sbjct: 238 KIYENTEKYSVMRAMRAIDRSDIVLMVINAEEGIREYDMRIAGFAHEAGK---GILIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|282895353|ref|ZP_06303554.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9] gi|281199604|gb|EFA74465.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9] Length = 460 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG VA+VG N GKS+L+N + +IVT TTR IV + I LDT G Sbjct: 223 RSGLKVAIVGRPNVGKSSLLNAWSQCDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S AD+V L +D+ + ++ +++ R LIL++NK Sbjct: 283 IRETVDQVEKIGVERSRQAANSADLVLLTIDAKAGWQSGDEEIYQQVKHRP--LILVINK 340 Query: 140 IDCVK 144 ID V+ Sbjct: 341 IDLVE 345 >gi|221639215|ref|YP_002525477.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides KD131] gi|221159996|gb|ACM00976.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides KD131] Length = 447 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 14/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +RG+ +++ DT G + Sbjct: 228 IVALVGYTNAGKSTLFNRMTGADVLAKDMLFATLDPTMRGVTLPSGRKVILSDTVGFISD 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHREL---KVNIHDLLKEIA-KRSSRLILILN 138 + R + + AD++ V D +H E ++ ++L+ + K ++ + + N Sbjct: 288 LPTQLVAAFRATLEEVLEADLILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEVWN 347 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K+D V+ E+LL QA + E F +SA G G D+L + +T Sbjct: 348 KLDLVEGATHEQLLAQAAKS------ETIFALSALTGEGLPDLLEAVSATF 392 >gi|254252263|ref|ZP_04945581.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] gi|124894872|gb|EAY68752.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] Length = 391 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 177 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 236 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 237 EVGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 294 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 295 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 348 >gi|58696986|ref|ZP_00372467.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila simulans] gi|58698319|ref|ZP_00373236.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58535192|gb|EAL59274.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58536766|gb|EAL60014.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila simulans] Length = 399 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 22/212 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 G I FNE+ + + +A++G N GKST +N + I + + TTR V Sbjct: 115 GVIENFNENTELPNNELSRLRIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDI 174 Query: 64 IVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 I +DT GI N D + S +IK + +V L++DS ++ Sbjct: 175 TYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDL 234 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE------RLLEQAEIANKLVFIE-KTFMVSATKGH 173 + + K +I++LNK D + + + ++Q E+ +F+E T +SA KG Sbjct: 235 SIGEAAIKGGKGIIVVLNKWDLIGKDDRSRLIKFVKQQEVTR--LFLEVPTITISALKGM 292 Query: 174 GCDDV----------LNYLCSTLPLAPWVYSA 195 C DV LN ST L W+ A Sbjct: 293 RCGDVIDKCLEVSESLNKKISTAKLNKWLIDA 324 >gi|323189559|gb|EFZ74839.1| tRNA modification GTPase TrmE [Escherichia coli RN587/1] Length = 454 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L E+ N I +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMNEL-NGHALIR----LSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|89072706|ref|ZP_01159271.1| GTP-binding protein EngA [Photobacterium sp. SKA34] gi|89051526|gb|EAR56980.1| GTP-binding protein EngA [Photobacterium sp. SKA34] Length = 500 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 57/123 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L + K + R L++NK+D + Sbjct: 64 EEGVETKMAEQSLAAIEEADVVLFLVDGRAGLTAADEAIAKHLRSREKPTFLVVNKVDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + V +DT GI K Sbjct: 214 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRK 273 Query: 85 DSYH---KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + K + + ++ A++V L++D+ + LL L++ +NK D Sbjct: 274 NMHQAVEKFSVIQTLKAVEDANVVLLIIDARENISDQDLSLLGFALNAGRSLVIAVNKWD 333 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + ++E+ +L F++ + +SA G G Sbjct: 334 GLDNEVKERVKSELDRRLGFVDFARIHFISALHGTGV 370 >gi|329919799|ref|ZP_08276750.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G] gi|328937146|gb|EGG33574.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G] Length = 461 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG A+VG N GKS+L+N + +IVT+ TTR + VS K + +DT G Sbjct: 222 RSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L+++S EL LL E+ + R I+ILNK Sbjct: 282 IRQTDDIVEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLL-ELTQDKKR-IVILNK 339 Query: 140 IDCV 143 D V Sbjct: 340 ADQV 343 >gi|259500781|ref|ZP_05743683.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335] gi|302190768|ref|ZP_07267022.1| tRNA modification GTPase TrmE [Lactobacillus iners AB-1] gi|309805912|ref|ZP_07699944.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b] gi|315654126|ref|ZP_07907042.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195] gi|325913694|ref|ZP_08176056.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B] gi|259167475|gb|EEW51970.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335] gi|308167688|gb|EFO69835.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b] gi|315488822|gb|EFU78468.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195] gi|325477053|gb|EGC80203.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B] Length = 461 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG A+VG N GKS+L+N + +IVT+ TTR + VS K + +DT G Sbjct: 222 RSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L+++S EL LL E+ + R I+ILNK Sbjct: 282 IRQTDDIVEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLL-ELTQDKKR-IVILNK 339 Query: 140 IDCV 143 D V Sbjct: 340 ADQV 343 >gi|213021691|ref|ZP_03336138.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 309 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 56 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 115 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 116 IDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 175 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N+L Sbjct: 176 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 228 Query: 184 STL 186 ++ Sbjct: 229 QSM 231 >gi|15672737|ref|NP_266911.1| GTP-binding protein EngA [Lactococcus lactis subsp. lactis Il1403] gi|26006736|sp|Q9CHH6|DER_LACLA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|12723672|gb|AAK04853.1|AE006309_2 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|326406306|gb|ADZ63377.1| GTP-binding protein [Lactococcus lactis subsp. lactis CV56] Length = 436 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VVD + + + + I R+ + +IL++NK+D Sbjct: 65 DEPFMTEIRAQAEIAMTEADVIIAVVDGETGI-TDADEAVANILYRTDKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PER +E + + + + + VSA G G DVL+ + LP Sbjct: 123 -NPERRMEIFDFYS--LGLGDPYPVSAVHGIGTGDVLDAIVQNLP 164 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR +I V ++ + V +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +DIV +V+++ RE + I E K +++++N Sbjct: 238 KIYENTEKYSVMRAMRAIDRSDIVLMVINAEEGIREYDMRIAGFAHEAGK---GILIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|308187766|ref|YP_003931897.1| GTP-binding protein engA [Pantoea vagans C9-1] gi|308058276|gb|ADO10448.1| GTP-binding protein engA [Pantoea vagans C9-1] Length = 496 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + V +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRA 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+H + LL I L++++NK D Sbjct: 270 KISDTVEKFSVIKTLQAIEDANVVMLVIDAHAGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E E + +L FI+ + +SA G G ++ Y CST Sbjct: 330 GLSQEVRDEVKETLDFRLGFIDFARIHFISALHGSGVGNLFESITEAYDCST 381 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ + + K + R L+ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGMMAADQQIAKHLRSRQKATFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + ++A+ G G ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIHAIAASHGRGVSSLIEE-----ALLPWM 163 >gi|15900887|ref|NP_345491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae TIGR4] gi|111658245|ref|ZP_01408937.1| hypothetical protein SpneT_02000559 [Streptococcus pneumoniae TIGR4] gi|21363022|sp|Q97R24|MNME_STRPN RecName: Full=tRNA modification GTPase mnmE gi|14972489|gb|AAK75131.1| thiophene and furan oxidation protein ThdF [Streptococcus pneumoniae TIGR4] Length = 457 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQETNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ ++ I Sbjct: 339 TDL--PET-IETSELPEDVIRI 357 >gi|300913770|ref|ZP_07131087.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561] gi|307725544|ref|YP_003905295.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513] gi|300890455|gb|EFK85600.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561] gi|307582605|gb|ADN56004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513] Length = 462 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 222 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ +I +LNK Sbjct: 282 IRDTDELVEKIGVTKSKEVLAEADLILFVLDASRELTKEDYEIFDILTGKN--IIFVLNK 339 Query: 140 IDCVK 144 ID K Sbjct: 340 IDLPK 344 >gi|148245045|ref|YP_001219739.1| tRNA modification GTPase TrmE [Candidatus Vesicomyosocius okutanii HA] gi|166234830|sp|A5CVJ3|MNME_VESOH RecName: Full=tRNA modification GTPase mnmE gi|146326872|dbj|BAF62015.1| tRNA modification GTPase [Candidatus Vesicomyosocius okutanii HA] Length = 447 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKS+L+N +IVT TTR +++ + + +DT G+ N+ Sbjct: 219 VAIAGKPNAGKSSLLNALTQESSAIVTDIAGTTRDVLKETIHVNGVPLSIIDTAGLRNSH 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K I+ + I+HAD+V +V D+ + K ++ L K I +S L+LI NK+D Sbjct: 279 DKIEKEGIKRANFEIEHADVVLMVFDAQDD-KPDLSILPKNINDQS--LLLIKNKVD 332 >gi|219871858|ref|YP_002476233.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165] gi|219692062|gb|ACL33285.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165] Length = 452 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 217 VVIAGKPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH 112 D K+ I+ +W I+ AD V L++DS+ Sbjct: 277 DEVEKIGIKRAWDEIEQADHVLLMIDSN 304 >gi|167855706|ref|ZP_02478462.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755] gi|167853162|gb|EDS24420.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755] Length = 452 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 217 VVIAGKPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH 112 D K+ I+ +W I+ AD V L++DS+ Sbjct: 277 DEVEKIGIKRAWDEIEQADHVLLMIDSN 304 >gi|332967862|gb|EGK06958.1| tRNA modification GTPase TrmE [Kingella kingae ATCC 23330] Length = 459 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 1/152 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G V+IVT+ TTR VR ++ I DT G+ Sbjct: 223 VVLVGAPNVGKSSLLNALAGDDVAIVTNIAGTTRDTVREQITLDGVPIHITDTAGLRQTD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K+ I S +++AD+ +++D + +L ++ R I + NKID Sbjct: 283 DVVEKIGIERSEKAVQNADVALILIDPAEGINPTTQAILDKLPTSLQR-IEVHNKIDLRD 341 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 L L + +SA G G D Sbjct: 342 ESASLHNESAGCFLSGADVLIKLSAKTGAGLD 373 >gi|319794354|ref|YP_004155994.1| ribosome-associated GTPase enga [Variovorax paradoxus EPS] gi|315596817|gb|ADU37883.1| ribosome-associated GTPase EngA [Variovorax paradoxus EPS] Length = 447 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 15/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VALVG N GKSTL NR + +IV TR G + + + +DT G + Sbjct: 4 VVALVGRPNVGKSTLFNRLTQTRDAIVADYAGLTRDRHYGNGRLGKHEFIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A +K M + + + AD+V VVD+ L HD+ E+ + +L NK + Sbjct: 64 AGSGIYKEMAKQTRQAVAEADVVIFVVDAREGLSAQDHDIANELRRLGKPCVLAANKAEG 123 Query: 143 VKPERLLEQAEIANKLV-FIEKTF----MVSATKGHGCDDVLNYLCSTLPL 188 + KLV F E F VSA G G D++ L L Sbjct: 124 MHD---------GTKLVDFYELGFGDVHGVSAAHGQGMRDLVELALEPLNL 165 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 6/160 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTL+N ++G + + TTR + + +DT G+ Sbjct: 183 LAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQRFELIDTAGLRRKG 242 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L++D+ + + + I + +++ +NK D Sbjct: 243 KVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVIAINKWD 302 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 V +R Q +I +L F++ +SA K G V Sbjct: 303 AVDSYQREQIQRQIETRLPFLKFASLHFISAIKRQGLGPV 342 >gi|320117061|ref|YP_004187220.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319930152|gb|ADV80837.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 462 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 222 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ +I +LNK Sbjct: 282 IRDTDELVEKIGVTKSKEVLAEADLILFVLDASRELTKEDYEIFDILTGKN--IIFVLNK 339 Query: 140 IDCVK 144 ID K Sbjct: 340 IDLPK 344 >gi|125625274|ref|YP_001033757.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris MG1363] gi|205415771|sp|A2RP37|MNME_LACLM RecName: Full=tRNA modification GTPase mnmE gi|124494082|emb|CAL99083.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris MG1363] gi|300072084|gb|ADJ61484.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris NZ9000] Length = 455 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR ++ + + +DT G Sbjct: 220 REGLKTAIIGRPNVGKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D + I S + AD+V LV+D+ EL +LL E++K ++R++L LNK Sbjct: 280 IRETDDLVEAIGIERSKKALAEADLVLLVLDASLELTDKDLELL-ELSKNANRIVL-LNK 337 Query: 140 IDCVKPERL 148 D PE+L Sbjct: 338 TDL--PEKL 344 >gi|167041019|ref|YP_001664004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514] gi|205829185|sp|B0K5N4|MNME_THEPX RecName: Full=tRNA modification GTPase mnmE gi|166855259|gb|ABY93668.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514] Length = 460 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 220 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ +I +LNK Sbjct: 280 IRDTDELVEKIGVTKSKEVLAEADLILFVLDASRELTKEDYEIFDILTGKN--IIFVLNK 337 Query: 140 IDCVK 144 ID K Sbjct: 338 IDLPK 342 >gi|167038669|ref|YP_001666247.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|205829184|sp|B0K8H9|MNME_THEP3 RecName: Full=tRNA modification GTPase mnmE gi|166857503|gb|ABY95911.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 460 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 220 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ +I +LNK Sbjct: 280 IRDTDELVEKIGVTKSKEVLAEADLILFVLDASRELTKEDYEIFDILTGKN--IIFVLNK 337 Query: 140 IDCVK 144 ID K Sbjct: 338 IDLPK 342 >gi|325519719|gb|EGC99039.1| tRNA modification GTPase TrmE [Burkholderia sp. TJI49] Length = 464 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 21/205 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNVLAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D ++ I +WS I+ AD+V ++DS + Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSEIERADVVLHLLDSRTGMT 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 + D+ IA R ++ +LNK D +E L + +SA +G Sbjct: 321 AD--DV--AIAARFPDGVPVVRVLNKTDLTGVPASVEHPAAEGDLTDVH----LSAKRGD 372 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 373 GIDLLRAEL---LRIAGWQAGAEGV 394 >gi|42520904|ref|NP_966819.1| GTP-binding protein EngA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410645|gb|AAS14753.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 441 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 22/212 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 G I FNE+ + + +A++G N GKST +N + I + + TTR V Sbjct: 157 GVIENFNENTELPNNELSRLRIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDI 216 Query: 64 IVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 I +DT GI N D + S +IK + +V L++DS ++ Sbjct: 217 TYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDL 276 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE------RLLEQAEIANKLVFIE-KTFMVSATKGH 173 + + K +I++LNK D + + + ++Q E+ +F+E T +SA KG Sbjct: 277 SIGEAAIKGGKGIIVVLNKWDLIGKDDRSRLIKFVKQQEVTR--LFLEVPTITISALKGM 334 Query: 174 GCDDV----------LNYLCSTLPLAPWVYSA 195 C DV LN ST L W+ A Sbjct: 335 RCGDVIDKCLEVSESLNKKISTAKLNKWLIDA 366 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL NR VG K ++V++ TR G+ + + +DT G +N + Sbjct: 4 IAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGG-WNDQ 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 ++ +I ++ +++I+ +VD+ + + N + K + ++ ++ +IL+ NK + Sbjct: 63 TNFSLQVIEQIEFSLSNSNIIFFLVDAKVQNERN-EEFAKWLKRKINKPVILVANKCESH 121 Query: 144 KPERL 148 K E + Sbjct: 122 KSENV 126 >gi|163803610|ref|ZP_02197476.1| tRNA modification GTPase TrmE [Vibrio sp. AND4] gi|159172604|gb|EDP57462.1| tRNA modification GTPase TrmE [Vibrio sp. AND4] Length = 453 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD N D+ + R S + +I NK D Sbjct: 278 DEVEKIGIERAWDEIAQADRVLFMVDGTTTDATNPKDIWPDFVDRLPNSIGMTVIRNKAD 337 Query: 142 CVKPE 146 E Sbjct: 338 QTGEE 342 >gi|290477349|ref|YP_003470270.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Xenorhabdus bovienii SS-2004] gi|289176703|emb|CBJ83512.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Xenorhabdus bovienii SS-2004] Length = 454 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 7/108 (6%) Query: 11 EHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R Sbjct: 198 EELDHVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLRE 257 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + + +DT G+ A D ++ I +W I+ AD V +VDS Sbjct: 258 HIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDS 305 >gi|228942633|ref|ZP_04105165.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975563|ref|ZP_04136115.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982199|ref|ZP_04142488.1| tRNA modification GTPase mnmE [Bacillus thuringiensis Bt407] gi|228777551|gb|EEM25829.1| tRNA modification GTPase mnmE [Bacillus thuringiensis Bt407] gi|228784173|gb|EEM32200.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817059|gb|EEM63152.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943282|gb|AEA19178.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar chinensis CT-43] Length = 458 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFH--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQAEIANKLV 159 D + ER+ E AE N+++ Sbjct: 336 TDLPQAIDMERVTELAE-GNRVI 357 >gi|198425019|ref|XP_002124408.1| PREDICTED: similar to Era-like 1 [Ciona intestinalis] Length = 413 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 4/145 (2%) Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFH 205 E++L Q + + F++SA +G D + NYL W Y D ++ + Sbjct: 268 EKMLRQMRSCRGWPYFKDVFVISALRGWETDRLRNYLNREAKNGNWNYPCDSVTTESSYD 327 Query: 206 FTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQ 265 +I R L +L EIPY + VV +W +K +G + ++ + ++ + ++M Q Sbjct: 328 IIRDIVRSALLDNLPYEIPYHTEVVISEWRKKDNGLLDLQFDLVCQKYAHARLM----NQ 383 Query: 266 NIKTISLEAKKEIAEILEQPVHLIL 290 N+ TI AK I +L L+L Sbjct: 384 NMTTILYSAKTRIETLLNCETELVL 408 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 8/134 (5%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+R V ++G N GKSTLVN + +V + ++ TT GI+++ E QI F D+P Sbjct: 68 NTRRLRVGVIGMPNVGKSTLVNAMINKQVMATSTRIDTTVKNSLGILTDGEVQIEFEDSP 127 Query: 79 GIFNAKDS--YHKLMIRLSW--STIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRS 130 GIFN S +H + + S +D+ +VVD + N L++ I R Sbjct: 128 GIFNKSKSKRFHGKIKGKDFPSSCFAESDLCMVVVDLSMKRTTNGFLDPEVLVELIKHRH 187 Query: 131 SRLILILNKIDCVK 144 IL++NKID VK Sbjct: 188 IPSILVINKIDKVK 201 >gi|188024473|ref|ZP_02997121.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|209554037|ref|YP_002284819.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|238058980|sp|B5ZBM9|DER_UREU1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188018583|gb|EDU56623.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|209541538|gb|ACI59767.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 442 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+L NR + + SIV + TR + + + + +DT GI ++ Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISS 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 +D+Y + I A+ + +V + + + I +LKE AK ++IL++NK+ Sbjct: 63 EDTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAK-DKKVILVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + K + E+ + K F +SA G G D+L+ L +P+ Sbjct: 122 ESEK--YYFNEGELYS--FGFGKFFKISAEHGIGMGDLLDELVKDMPI 165 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-- 84 ++G N GKS+L N +G + IV + +TR + S + +DT G+ Sbjct: 179 IIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRRKGKI 238 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 ++ K + + I+ + ++ LV+D K Sbjct: 239 VEAVEKYAVLRTQKAIERSQLILLVLDGSEPFK 271 >gi|110590301|pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Rb+ gi|110590302|pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Rb+ gi|110590303|pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Rb+ gi|110590304|pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Rb+ gi|110590305|pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Nh4+ gi|110590306|pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Nh4+ Length = 172 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W I+ AD V +VD V+ ++ E IA+ ++L ++ NK D Sbjct: 67 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 L +E+ N I +SA G G D + N+L ++ Sbjct: 127 ITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLKQSM 164 >gi|227504288|ref|ZP_03934337.1| GTP-binding protein EngA [Corynebacterium striatum ATCC 6940] gi|227199127|gb|EEI79175.1| GTP-binding protein EngA [Corynebacterium striatum ATCC 6940] Length = 541 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 8/169 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL-DTPGIFN 82 VA+VG N GKS+LVNRF+G + ++V TR V V+E Q F+ DT G Sbjct: 105 TVAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRV-SYVAEWNGQRFFVQDTGGWDP 163 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 H + R + + AD++ VVD+ + + +++ K +IL+ NK D Sbjct: 164 NVKGIHAAIARQAELAMNTADVIVFVVDTKVGITETDAVMARKLQKSEVPVILVSNKFDS 223 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E + A++A + + VSA G G DVL+ + P P Sbjct: 224 ---ETMY--ADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRLFPEEP 267 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ + S+V + TT V +V + F+DT G + Sbjct: 279 VALVGKPNVGKSSLLNKLTSEERSVVDNAAGTTVDPVDSLVQLDQRLWKFIDTAGLRKKV 338 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ +++D+ E+ +L + + L++ NK Sbjct: 339 KNAQGHEYYASLRTR-GVIDAAEVCIMLIDASEEVSEQDQRVLNMVLEAGKALVIAFNKW 397 Query: 141 DCVKPER 147 D + +R Sbjct: 398 DLMDEDR 404 >gi|56461130|ref|YP_156411.1| GTP-binding protein EngA [Idiomarina loihiensis L2TR] gi|81821723|sp|Q5QYB3|DER_IDILO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56180140|gb|AAV82862.1| GTPase EngA [Idiomarina loihiensis L2TR] Length = 479 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 4/156 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + Q + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYQFIVIDTGGIHGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M + S + AD+V +VD+ + V + + K++ ++ L+ NKID + Sbjct: 64 EEGIDEEMAKQSLLAVDEADVVLFMVDARDGVTVGDQAIADHLRKQNKKVYLVCNKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + A+ + + + + + ++A G G + +L Sbjct: 124 DAHSAM--ADFYS--LSLGELYGIAAAHGRGVEQLL 155 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL+NR +G + +V TTR V + E + V +DT G+ Sbjct: 194 LAIVGRPNVGKSTLINRILGEERVVVYDMPGTTRDSVYIPMQRNEREYVLIDTAGVRRRG 253 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V +VVD+ + +L+ +++ +NK D Sbjct: 254 RIGEAIEKFSVVKTLQAIEDANVVLIVVDARETISDQDLNLIGFALNAGRSIVIAVNKWD 313 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGC 175 ++ + E + E+ +L F++ + +SA G G Sbjct: 314 GLQNDHKEEIKRELDRRLGFVDFARLHFISALHGTGV 350 >gi|302874737|ref|YP_003843370.1| ribosome-associated GTPase EngA [Clostridium cellulovorans 743B] gi|307690648|ref|ZP_07633094.1| GTP-binding protein EngA [Clostridium cellulovorans 743B] gi|302577594|gb|ADL51606.1| ribosome-associated GTPase EngA [Clostridium cellulovorans 743B] Length = 438 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 13/167 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G +++IV K TR + + +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVEDKPGVTRDRIYASSEWVGQEFTIIDTGGIEPKS 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R + I+ A+++ +VD L ++ + + K ++L +NK+D + Sbjct: 66 DDIILAQMRRQALIAIETANVIIFIVDGKSGLTDTDREVAQMLRKSKKSIVLAVNKVDSI 125 Query: 144 KPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVLNYLCSTL 186 K E NK F + +SA++G G D+L+ + Sbjct: 126 KEEE--------NKFEFYNLGLGDPVAISASQGLGLGDMLDMVVDNF 164 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKS+L+N+ +G + +IV++ TTR + + + + + +DT G+ Sbjct: 179 IAMIGKPNVGKSSLINKLLGEERNIVSNIPGTTRDAIDSPLETEIGKFMLIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + + I+ AD+ L++D+ EL ++ + + +++I+NK D Sbjct: 239 KVKEEIERYSVIRTLTAIERADVCILMLDATEELSEQDEKIIGYAHELNKAIMVIVNKWD 298 Query: 142 CVKPE 146 ++ + Sbjct: 299 LIEKD 303 >gi|99034460|ref|ZP_01314456.1| hypothetical protein Wendoof_01000738 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 405 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 22/212 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 G I FNE+ + + +A++G N GKST +N + I + + TTR V Sbjct: 157 GVIENFNENTELPNNELSRLRIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDI 216 Query: 64 IVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 I +DT GI N D + S +IK + +V L++DS ++ Sbjct: 217 TYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDL 276 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE------RLLEQAEIANKLVFIE-KTFMVSATKGH 173 + + K +I++LNK D + + + ++Q E+ +F+E T +SA KG Sbjct: 277 SIGEAAIKGGKGIIVVLNKWDLIGKDDRSRLIKFVKQQEVTR--LFLEVPTITISALKGM 334 Query: 174 GCDDV----------LNYLCSTLPLAPWVYSA 195 C DV LN ST L W+ A Sbjct: 335 RCGDVIDKCLEVSESLNKKISTAKLNKWLIDA 366 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL NR VG K ++V++ TR G+ + + +DT G +N + Sbjct: 4 IAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGG-WNDQ 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 ++ +I ++ +++I+ +VD+ + + N + K + ++ ++ +IL+ NK + Sbjct: 63 TNFSLQVIEQIEFSLSNSNIIFFLVDAKVQNERN-EEFAKWLKRKINKPVILVANKCESH 121 Query: 144 KPERL 148 K E + Sbjct: 122 KSENV 126 >gi|147679252|ref|YP_001213467.1| tRNA modification GTPase TrmE [Pelotomaculum thermopropionicum SI] gi|189036204|sp|A5CY46|MNME_PELTS RecName: Full=tRNA modification GTPase mnmE gi|146275349|dbj|BAF61098.1| predicted GTPase [Pelotomaculum thermopropionicum SI] Length = 459 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 90/172 (52%), Gaps = 6/172 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + +IVT TTR I+ ++ + + +DT G+ D+ Sbjct: 225 IIGRPNVGKSSLLNALLRENRAIVTDIPGTTRDIIEEYINIRGIPLKIIDTAGLRETGDA 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ + + ++ AD+V LV+D+ R L + +++++ + ++I I+NK D V+ + Sbjct: 285 VERIGVEKAREAVEQADLVLLVLDAARGLTEEDYAIIEKVGGK--KVIFIVNKAD-VREK 341 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ++ +E A ++ +SA +G G D + + + + VY D++ Sbjct: 342 KI--SSEGAARIAGGRPVLWISALEGTGLDKLEEKIVEMV-MGGQVYPKDEL 390 >gi|89054660|ref|YP_510111.1| GTP-binding protein EngA [Jannaschia sp. CCS1] gi|122498632|sp|Q28QC6|DER_JANSC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|88864209|gb|ABD55086.1| Small GTP-binding protein domain [Jannaschia sp. CCS1] Length = 479 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 9/162 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V + TR + G + + +DT G+ +A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGRKLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLEDA 63 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL-KEIAKRSSR-LILILNKI 140 DS M RL+ + AD V+D+ V +DL+ +I ++S R ++L NK Sbjct: 64 NDDSLEGRMRRLTERAVSMADATLFVMDAR--AGVTTNDLVFADILRKSGRPVVLAANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + + L A + + + +SA G G D++ L Sbjct: 122 EGNAGQSGLLDAYS----LGLGEPLALSAEHGEGMADLVQVL 159 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 20/180 (11%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E +D V +S+ +A+VG NAGKSTL+N+ +G + + TR + + Sbjct: 179 EGEDRVITHSKPLQIAVVGRPNAGKSTLINQIIGEDRLLTGPEAGITRDAIGLTFEWDDV 238 Query: 71 QIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEI 126 + DT G+ ++ KL + +K A++V +++D+ + DL + ++ Sbjct: 239 PMRIFDTAGMRKRAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDA--AIPFESQDLRIADL 296 Query: 127 AKRSSRLILI-LNKIDCVKPERLLEQAEIANKLVFIEKTF---------MVSATKGHGCD 176 A+R R ++I +NK D V+PE+ Q ++ + V +E+ VSA G G D Sbjct: 297 AEREGRAVVIAVNKWD-VEPEK---QQKLKDLRVGLERLLPQLRGAPLVTVSAKTGKGLD 352 >gi|309792496|ref|ZP_07686960.1| GTP-binding proten HflX [Oscillochloris trichoides DG6] gi|308225484|gb|EFO79248.1| GTP-binding proten HflX [Oscillochloris trichoides DG6] Length = 458 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 13/225 (5%) Query: 15 FVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 + Q SG VALVG TNAGKSTL+N GA V T R + I Sbjct: 224 YRQRRKGSGVPVVALVGYTNAGKSTLLNALSGADVLTQDQLFATLDPTTRQVTLPGNHHI 283 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAK 128 + DT G + R + I AD++ VVD + +E + L+E+ Sbjct: 284 LLTDTVGFIQKLPTQLVAAFRATLEEINEADLLLHVVDLTHPNAQEHAQTVEKTLEELGV 343 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP- 187 + +LNK+D ++ E A++ ++ VSA +G G D + + + L Sbjct: 344 SRKATLTVLNKVDKLEGVAAGEVADLVREMGLPSDVIAVSAQRGWGLDQLGERIVTALSE 403 Query: 188 --LAPWVYSADQISDL-PMFHFTAEITREKLF---LHLHKEIPYS 226 +A V Q +DL ++H I RE+ H+ IP + Sbjct: 404 GMVALKVLIPYQRNDLVSLWHRRGVIDREEYIGEGTHIQGRIPRT 448 >gi|225630952|ref|YP_002727743.1| GTP-binding protein [Wolbachia sp. wRi] gi|225592933|gb|ACN95952.1| GTP-binding protein [Wolbachia sp. wRi] Length = 441 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 22/212 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 G I FNE+ + + +A++G N GKST +N + I + + TTR V Sbjct: 157 GVIENFNENTELPNNELSRLRIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDI 216 Query: 64 IVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 I +DT GI N D + S +IK + +V L++DS ++ Sbjct: 217 TYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDL 276 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE------RLLEQAEIANKLVFIE-KTFMVSATKGH 173 + + K +I++LNK D + + + ++Q E+ +F+E T +SA KG Sbjct: 277 SIGEAAIKGGKGIIVVLNKWDLIGKDDRSRLIKFVKQQEVTR--LFLEVPTITISALKGM 334 Query: 174 GCDDV----------LNYLCSTLPLAPWVYSA 195 C DV LN ST L W+ A Sbjct: 335 RCGDVIDKCLEVSESLNKKISTAKLNKWLIDA 366 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 11/129 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL NR VG K ++V++ TR G+ + + +DT G +N + Sbjct: 4 IAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGG-WNDQ 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-----LILILNK 139 S+ +I ++ ++I+ +VD+ + + N KE AK R +ILI NK Sbjct: 63 TSFSLQVIEQIEFSLSSSNIIFFLVDAKVQNERN-----KEFAKWLKRKINKPVILIANK 117 Query: 140 IDCVKPERL 148 + K E + Sbjct: 118 CESHKSENV 126 >gi|329565815|gb|AEB92244.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 185 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 244 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ ++ +LNK Sbjct: 245 IRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNK 302 Query: 140 IDCVK 144 ID K Sbjct: 303 IDLPK 307 >gi|325479528|gb|EGC82624.1| ribosome biogenesis GTPase Der [Anaerococcus prevotii ACS-065-V-Col13] Length = 439 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 13/173 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V LVG TN GKSTL NR VG K SI TR + V + ++ + +DT G+ Sbjct: 5 MVTLVGRTNVGKSTLFNRLVGKKKSITEDVSGVTRDRIVDKVEWQNNEFLLVDTGGL--- 61 Query: 84 KDSYHKLMIRLSWSTIKHA----DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 S ++M S ++ A D++ VVD + D+ EI K + +I++ NK Sbjct: 62 DISNKEIMNTEVKSQVEKALLETDMILFVVDGKEGVNPYDIDIANEIRKYNKPVIIVANK 121 Query: 140 IDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 +D K P+ + + + + M+SA + G D+L+ + S + + + Sbjct: 122 LDSFKIPDDIYDFYQFG-----FDDLSMISAEQSKGLGDLLDKIISFIDFSAY 169 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++D +R +A++G NAGKS+LVN + IVT TTR V + ++ V + Sbjct: 172 IEDETR---IAIIGKPNAGKSSLVNLLLNEDRMIVTDIAGTTRDAVDSYWTYNDNNYVLI 228 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH 112 DT G+ K++ + ++ + A++ ++D++ Sbjct: 229 DTAGLRRKSKVKENVEYYANQRTFDAVDSAEVCLFLIDAN 268 >gi|322376714|ref|ZP_08051207.1| tRNA modification GTPase TrmE [Streptococcus sp. M334] gi|321282521|gb|EFX59528.1| tRNA modification GTPase TrmE [Streptococcus sp. M334] Length = 457 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQETNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|188518230|ref|ZP_03003765.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188998276|gb|EDU67373.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 442 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+L NR + + SIV + TR + + + + +DT GI ++ Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISS 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 +D+Y + I A+ + +V + + + I +LKE AK ++IL++NK+ Sbjct: 63 EDTYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAK-DKKVILVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + K + E+ + K F +SA G G D+L+ L +P+ Sbjct: 122 ESEK--YYFNEGELYS--FGFGKFFKISAEHGIGMGDLLDELVKDMPI 165 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-- 84 ++G N GKS+L N +G + IV + +TR + S + +DT G+ Sbjct: 179 IIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRRKGKI 238 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 ++ K + + I+ + ++ LV+D K Sbjct: 239 VEAVEKYAVLRTQKAIERSQLILLVLDGSEPFK 271 >gi|90581133|ref|ZP_01236932.1| tRNA modification GTPase [Vibrio angustum S14] gi|90437654|gb|EAS62846.1| tRNA modification GTPase [Vibrio angustum S14] Length = 455 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 14/163 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I HAD V +VDS + ++ + +R L +I NK + Sbjct: 280 DEVERIGIERAWDEIAHADRVLFMVDSTTTDATDPKEIWPDFIERLPADMGLTVIRNKAE 339 Query: 142 CVKPERLLEQAEI--ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 EQA I AN I +SA G G D + +L Sbjct: 340 LTG-----EQAGICHANNPTLIR----LSARTGDGVDALREHL 373 >gi|71083056|ref|YP_265775.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1062] gi|123647187|sp|Q4FNR7|MNME_PELUB RecName: Full=tRNA modification GTPase mnmE gi|71062169|gb|AAZ21172.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1062] Length = 443 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 69/122 (56%), Gaps = 5/122 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G TNAGKS+L+N V+IV+ TTR ++ ++ +V DT GI ++K Sbjct: 217 IAIIGPTNAGKSSLLNHLSNRDVAIVSEIAGTTRDVIETHLNIDGYPVVVSDTAGIRDSK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + K I+L+ +AD+ +V+D+ ++ +LKE+ ++ IL++NK D + Sbjct: 277 NEIEKKGIKLALDKADNADLKLIVIDAK---SIDFKGVLKELMDENA--ILVINKSDLLN 331 Query: 145 PE 146 + Sbjct: 332 KD 333 >gi|332663276|ref|YP_004446064.1| GTP-binding protein engA [Haliscomenobacter hydrossis DSM 1100] gi|332332090|gb|AEE49191.1| GTP-binding protein engA [Haliscomenobacter hydrossis DSM 1100] Length = 434 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 13/170 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKST NR +G + SIV + TR G +DT G Sbjct: 2 SNIVAIVGRPNVGKSTFFNRLIGERQSIVDNISGVTRDRQYGASYWNGKNFTVVDTGGFV 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILI 136 D + IR + A ++ +VD + I DL +E+A +RS + + L+ Sbjct: 62 PHSDDVFEAAIREQVKIAVDEASVIIFLVD----VTTGITDLDEEVANLLRRSKKPVFLV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +NK+D +RL E E + + E T +SA G G ++L+ + L Sbjct: 118 VNKVD--NGQRLFEANEFWS--LGFENTLFLSALTGSGSGEILDAVADHL 163 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+L N +G +IVT TTR + + ++ + + + +DT GI Sbjct: 178 AIVGQPNVGKSSLTNALLGEDRNIVTEIAGTTRDSIDALYTKFDKEFILVDTAGIRKKAK 237 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + L + + I+ D+ L++D+ ++ + + +R+ +++++NK D Sbjct: 238 VHENLEFYSVLRAIKAIEDCDVCILMIDAQTGVESQDQAIFRLAQRRNKGIVILVNKWDL 297 Query: 143 VK 144 V+ Sbjct: 298 VE 299 >gi|304317178|ref|YP_003852323.1| ribosome-associated GTPase EngA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778680|gb|ADL69239.1| ribosome-associated GTPase EngA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 439 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 V +VG N GKSTL N+ G ++SIV K TR + + + +DT G+ + Sbjct: 5 MVGIVGRPNVGKSTLFNKITGQRISIVEDKPGVTRDRIYYETEWLGRKFILVDTGGLEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D + + + +K D++ V+D+ L D+ + K ++IL+LNK+D Sbjct: 65 SEDEFFSKIRMQVEAALKTVDLILFVIDAKDGLSPVDEDIANMLRKSHKKVILVLNKVDS 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E + + + +L F E +SA+ G G ++L+ + +P Sbjct: 125 FK-EMPISYYD-SMRLGFGE-PIAISASNGLGIGELLDEVIKNIP 166 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 + +G N GKS+LVN+ +G + +IV+ TTR + + + V +DT G+ Sbjct: 179 ICFIGKPNVGKSSLVNKILGEERAIVSDIPGTTRDALDTYFEKDNKKYVIIDTAGMRKKG 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDS 111 +D + + + S I +DI LV+D+ Sbjct: 239 RIEDKIERYSVLRALSAIDRSDICILVIDA 268 >gi|307152641|ref|YP_003888025.1| ribosome-associated GTPase EngA [Cyanothece sp. PCC 7822] gi|306982869|gb|ADN14750.1| ribosome-associated GTPase EngA [Cyanothece sp. PCC 7822] Length = 452 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 4/176 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFN 82 VA++G N GKSTLVNR G + +IV + TR ++ +DT G +F+ Sbjct: 5 IVAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLVFD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + L+ + + + A+ VVD ++ + +S ++L +NK C Sbjct: 65 DDTEFLPLIREQAMAALTEANAAIFVVDGQSGPTAGDQEIADWLRSQSVPVLLAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 E+ + QA +L E + +SA G+G D+L+ L + LPL+ V D+I Sbjct: 123 ESVEQGIIQASQFWELGLGEP-YPISAIHGNGTGDLLDQLITYLPLSGEVPENDEI 177 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N F G + +IV+ TTR + I+ +DT GI K Sbjct: 179 VAIVGRPNVGKSSLLNAFTGQQRAIVSPISGTTRDTIDTIIERNGQHYRLIDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ +D+V VVD+ + L I IL++NK D Sbjct: 239 NVEYGAEFFGINRAFKAIRRSDVVLFVVDALDGITDQDLKLAGRIIDEGRATILVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIEKTFM--VSATKGHGCDDVLN 180 V+ + Q + ++L F++ M VSA G + +L+ Sbjct: 299 AVEKDSYTIYEYQKILGSRLYFMDWAEMIFVSALTGQRVEKILD 342 >gi|306829480|ref|ZP_07462670.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249] gi|304428566|gb|EFM31656.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249] Length = 457 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ ++ I Sbjct: 339 TDL--PEA-IETSELPEDVIRI 357 >gi|298384325|ref|ZP_06993885.1| tRNA modification GTPase TrmE [Bacteroides sp. 1_1_14] gi|298262604|gb|EFI05468.1| tRNA modification GTPase TrmE [Bacteroides sp. 1_1_14] Length = 465 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 5/177 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTINISGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VDS + I L ++I R +LI++ NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDSS-DASSQIKQLSEKIIPRCEEKQLIVVFNKADL 341 Query: 143 VKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ++ ++ E A + N K+ +SA + D++ L + L P V D I Sbjct: 342 IEEKQKEELSALLKNFPKEYTKSIFISAKERKQTDELQKMLINAAHL-PTVTQNDII 397 >gi|225569437|ref|ZP_03778462.1| hypothetical protein CLOHYLEM_05522 [Clostridium hylemonae DSM 15053] gi|225161645|gb|EEG74264.1| hypothetical protein CLOHYLEM_05522 [Clostridium hylemonae DSM 15053] Length = 404 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 2/132 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+++N G ++IV+ K TT +++ + +V +DTPG+ + Sbjct: 14 IGIFGKRNAGKSSVINALTGQDLAIVSDIKGTTTDPVLKAMELLPLGPVVMIDTPGL-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L ++ ++ + DI LVVD + H +LK I ++ +++LNK D Sbjct: 73 EGELGTLRVQKAYQILNKTDIAVLVVDGTVGMTEADHAILKRIKEKKLPSVVVLNKADIA 132 Query: 144 KPERLLEQAEIA 155 P+R + A + Sbjct: 133 VPDRYKDAASLG 144 >gi|118588128|ref|ZP_01545538.1| GTP-binding protein EngA [Stappia aggregata IAM 12614] gi|118439750|gb|EAV46381.1| GTP-binding protein EngA [Stappia aggregata IAM 12614] Length = 473 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 9/164 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 VA++G N GKSTL NR VG ++++V TR G + + +DT G+ Sbjct: 2 GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGDARLGDLRFTIIDTAGLE 61 Query: 82 NA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSR-LILILN 138 +A K+S M R + I+ AD V V+D+ + ++ H E+A++++R +IL+ N Sbjct: 62 DADKESLEGRMRRQTEEAIETADAVLFVIDARAGVTPLDAH--FAEVARKTTRPVILLAN 119 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K + R E + + + +SA G G D+ + L Sbjct: 120 KAEG----RAGESGLYESYSLGLGDPIAISAEHGEGLADLYDAL 159 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 18/186 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+NR +G + + TR + ++ I DT GI Sbjct: 205 VAIVGRPNAGKSTLINRMLGEDRMLTGPEAGITRDSISVDWVWRDRHIKLFDTAGIRKKA 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ KL + + IK A++V + +D+ + ++ +A+ L++ +NK D Sbjct: 265 RVQEKLEKLSVADALRAIKFAEVVVVTLDATMSFEKQDLQIIDLVAREGRALVVAINKWD 324 Query: 142 CVKP-ERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVL----------NYLCSTL 186 ++ E ++ + AN+ F + + +S +G G D ++ N ST Sbjct: 325 LIEDREEAWKKIKDANERYFNQIRGVQIATLSGQQGQGIDRLIESVFTAYEAWNARVSTA 384 Query: 187 PLAPWV 192 L W+ Sbjct: 385 KLNRWL 390 >gi|188586247|ref|YP_001917792.1| small GTP-binding protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|226741142|sp|B2A4M9|DER_NATTJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|179350934|gb|ACB85204.1| small GTP-binding protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 440 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 5/168 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S VALVG N GKS L NR VG ++SIV TR + G +DT G Sbjct: 2 SVKATVALVGRPNVGKSALFNRIVGQRISIVDDTPGVTRDRIDGKGEWSGHSFNLIDTGG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 IF+ +D K ++ + I AD++ V D + ++ + K +++ +NK Sbjct: 62 IFDEEDDILKQVVIQAEVAIDEADVIVFVTDGRDGITPADEEVAATLRKTKKPVLVAVNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + +E ++ E+ +SA G +L+ + LP Sbjct: 122 SEGNYDQYAMEFYQLG-----FEQVISISALHGTNTGQLLDEIVELLP 164 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 69/139 (49%), Gaps = 10/139 (7%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 N H+D + ++++G N GKS+L+N+ + + IV++ TTR + ++ + Sbjct: 171 LNYHEDDI-------MLSVIGRPNVGKSSLINKILNKERLIVSNMPGTTRDAIDTVIERE 223 Query: 69 ESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 + + VF+DT G+ + K + S ++ ++I L++D + + + Sbjct: 224 DQKYVFIDTAGLRKKSKIDERLEKYSVIRSIKGMERSNIALLLIDVTKGILEQDKKIAGL 283 Query: 126 IAKRSSRLILILNKIDCVK 144 ++ LI++LNK D ++ Sbjct: 284 AEEKGKGLIILLNKWDAIE 302 >gi|213027904|ref|ZP_03342351.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 153 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 6/140 (4%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F NE + V VALVG N GKSTL NR + ++V TR G Sbjct: 5 FLNEALNMVP------VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEV 58 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + + + +DT GI +D M S I+ AD+V +VD+ L + K + Sbjct: 59 EGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLR 118 Query: 128 KRSSRLILILNKIDCVKPER 147 R L+ NK D + P++ Sbjct: 119 SREKPTFLVANKTDGLDPDQ 138 >gi|307069505|ref|YP_003877982.1| tRNA modification GTPase mnmE (trmE) [Candidatus Zinderia insecticola CARI] gi|306482765|gb|ADM89636.1| tRNA modification GTPase mnmE (trmE) [Candidatus Zinderia insecticola CARI] Length = 455 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 8/137 (5%) Query: 29 GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 G TN GKS+L+N +KVSIVT TT ++ + K + I +DT GI K Y+ Sbjct: 227 GRTNMGKSSLMNILSKSKVSIVTSISGTTIDKIKNSIFFKNNLINLIDTAGI--KKKIYN 284 Query: 89 K---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 K + I+ SW IK ++I+ + +S++ L + ++ ++ K+ ++I I NKID +K Sbjct: 285 KIERISIKKSWKEIKKSNIILYLFESYKGLLKKDYYIINKLPKK--KIIFIGNKIDLIKY 342 Query: 146 ERLLEQAEIANKLVFIE 162 + +++ NK+++I Sbjct: 343 KPFIKKFN-NNKIIYIS 358 >gi|16272938|ref|NP_439164.1| tRNA modification GTPase TrmE [Haemophilus influenzae Rd KW20] gi|1574033|gb|AAC22664.1| thiophene and furan oxidation protein (thdF) [Haemophilus influenzae Rd KW20] Length = 461 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 226 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAI 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 286 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 345 Query: 142 C 142 Sbjct: 346 L 346 >gi|167587057|ref|ZP_02379445.1| GTP-binding proten HflX [Burkholderia ubonensis Bu] Length = 387 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Query: 11 EHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSE 67 +H + +RSG V+LVG TNAGKSTL N A+ T + R + + + Sbjct: 177 QHSTQRRQRARSGTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGD 236 Query: 68 KESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHD 121 + QIV DT G ++ H+L+ R + HAD++ VVD+ +++ ++ Sbjct: 237 EIGQIVVSDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLEQIEQVNG 294 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 295 VLHEIGADTIRQVLVFNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 348 >gi|122700655|emb|CAL87916.1| GTPase [Helicobacter pylori] gi|122702851|emb|CAL88615.1| GTPase [Helicobacter pylori] gi|122702855|emb|CAL88617.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + STL L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLNLNP 170 >gi|25028117|ref|NP_738171.1| GTP-binding protein EngA [Corynebacterium efficiens YS-314] gi|259507174|ref|ZP_05750074.1| ribosome-associated GTPase EngA [Corynebacterium efficiens YS-314] gi|23493401|dbj|BAC18371.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165255|gb|EEW49809.1| ribosome-associated GTPase EngA [Corynebacterium efficiens YS-314] Length = 552 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 14/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + + + DT G Sbjct: 115 TVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLSDWGGQRFWVQDTGGWDPN 174 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + + + AD++ VVD+ KV I + +A++ R +IL+ NK Sbjct: 175 VKGIHASIAHQAELAMASADVIVFVVDT----KVGITETDAVMARKLKRADVPVILVANK 230 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D + A++A + F VSA G G DVL+ + + P P Sbjct: 231 FDSDS-----QWADMAEFYALGLGDPFPVSAQHGRGGADVLDKILESFPEEP 277 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+F G + S+V + TT V I+ + F+DT G+ Sbjct: 289 VALVGKPNVGKSSLLNKFAGEERSVVDNVAGTTVDPVDSIIQLDQKMWKFIDTAGLRKKV 348 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + Y L R S I A++ L++DS + +L I L++ N Sbjct: 349 KTATGHEFYASLRTR---SVIDSAEVCVLLIDSSEPITEQDQRVLAMITDAGKALVVAFN 405 Query: 139 KIDCVKPERLLE 150 K D + +R E Sbjct: 406 KWDLMDEDRRWE 417 >gi|332300532|ref|YP_004442453.1| GTP-binding protein engA [Porphyromonas asaccharolytica DSM 20707] gi|332177595|gb|AEE13285.1| GTP-binding protein engA [Porphyromonas asaccharolytica DSM 20707] Length = 436 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKSTL NR ++ +IVT + TTR G V+ E +DT G + Sbjct: 2 SNLVAIVGRPNVGKSTLFNRLTRSRQAIVTEEAGTTRDRQYGHVTWCERTFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 + D + + + + ++ AD++ VVD + + DL EIA + + +IL+ Sbjct: 62 LRSDDVFEEEINKQVRIAVEEADLILFVVD----ILNGVTDLDDEIALMLRQTNKPVILV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D + AE + I + +SA G D+L+++ LP Sbjct: 118 ANKADNFTQHN--DAAEFYT--LGIGDPYPISAINGSSTGDLLDHILELLP 164 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 72/137 (52%), Gaps = 12/137 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS+L+N +G + +IVT + TTR + + +DT GI Sbjct: 179 AIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFAEYDKFNQHFYLVDTAGIRKKGK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ + I++AD+ +++D+ R ++ ++ + I + + L++ +NK Sbjct: 239 VNEDLEYYSVIRAI--RAIENADVCIMLIDATRGIEAQDANIFRVIQRNNKGLVVCVNKW 296 Query: 141 DCVKP-----ERLLEQA 152 D V+ +R +E+A Sbjct: 297 DLVEDKSMPVQRTMEEA 313 >gi|239815182|ref|YP_002944092.1| GTP-binding protein EngA [Variovorax paradoxus S110] gi|259645888|sp|C5CXH0|DER_VARPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239801759|gb|ACS18826.1| small GTP-binding protein [Variovorax paradoxus S110] Length = 447 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 15/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VALVG N GKSTL NR + +IV TR G + + + +DT G + Sbjct: 4 VVALVGRPNVGKSTLFNRLTQTRDAIVADFAGLTRDRHYGNGRLGKHEFIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A +K M + + + AD+V VVD+ L HD+ E+ + +L NK + Sbjct: 64 AGSGIYKEMAKQTRQAVAEADVVIFVVDAREGLSAQDHDIANELRRLGKPCVLAANKAEG 123 Query: 143 VKPERLLEQAEIANKLV-FIEKTF----MVSATKGHGCDDVLNYLCSTLPL 188 + KLV F E F VSA G G D++ + L L Sbjct: 124 MHD---------GTKLVDFYELGFGDVHGVSAAHGQGMRDLVELALAPLNL 165 Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 6/160 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTL+N ++G + + TTR + + +DT G+ Sbjct: 183 LAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERNGQRFELIDTAGLRRKG 242 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A +V L++D+ + + + I + +++ +NK D Sbjct: 243 KVFEAIEKFSVVKTLQAIESASVVLLLLDATQGVTDQDAHIAGYILESGRAVVIAINKWD 302 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 V +R Q +I +L F++ +SA K G V Sbjct: 303 AVDSYQREQIQRQIETRLPFLKFASLHFISAIKRQGLGPV 342 >gi|302389542|ref|YP_003825363.1| ribosome-associated GTPase EngA [Thermosediminibacter oceani DSM 16646] gi|302200170|gb|ADL07740.1| ribosome-associated GTPase EngA [Thermosediminibacter oceani DSM 16646] Length = 436 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKSTL NR +G ++SIV K TR + G V + + +DT GI Sbjct: 2 SFTVAIVGRPNVGKSTLFNRIIGKRISIVDDKPGVTRDRIYGQVEWRGKKFTLVDTGGID 61 Query: 82 -NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + R I +D++ ++DS L ++ + K +I ++NK+ Sbjct: 62 PEGSDVMTSHIRRQVEFAIDSSDLILFLLDSKEGLLPTDKEVAALLRKSGKPIIPVINKV 121 Query: 141 D--CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 D KPE L E ++ + + +SA G D+L+ + Sbjct: 122 DDYAAKPE-LYEFYQLG-----LGEPVFISAIHGSNVGDLLDQIVG 161 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA+VG N GKS+LVN +G + IV+ TTR + + ++V +DT G+ Sbjct: 178 VAVVGKPNVGKSSLVNAILGEERVIVSDIPGTTRDAIDTPFEYEGQKMVLIDTAGMRRKS 237 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D IR + ++ ADIV +V+D+ +E+ + + +I+++NK Sbjct: 238 RVKEDIEFYSNIR-ALGAVERADIVLVVLDATQEISEQDKKIAGIAHEAGKAVIIVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 >gi|269103271|ref|ZP_06155968.1| GTP-binding protein EngA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163169|gb|EEZ41665.1| GTP-binding protein EngA [Photobacterium damselae subsp. damselae CIP 102761] Length = 499 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEINEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD L + K + R+ L++NKID + Sbjct: 64 EEGVETKMAEQSLMAIEEADVVLFLVDGRAGLTAADEAIAKHLRSRNKPTFLVVNKIDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A++G N GKSTL NR +G + +V TTR + + + V +DT GI Sbjct: 213 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRK 272 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N ++ K + + ++ A++V L++D+ + LL L++ +NK D Sbjct: 273 NMHEAVEKFSVIQTLKAVEDANVVLLIIDARENISDQDLSLLGFALNAGRSLVIAVNKWD 332 Query: 142 CVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + ER+ + E+ +L F++ + +SA G G Sbjct: 333 GLDNDVKERV--KTELDRRLGFVDFARIHFISALHGTGV 369 >gi|157155417|ref|YP_001465191.1| tRNA modification GTPase TrmE [Escherichia coli E24377A] gi|166991107|sp|A7ZTR2|MNME_ECO24 RecName: Full=tRNA modification GTPase mnmE gi|157077447|gb|ABV17155.1| tRNA modification GTPase TrmE [Escherichia coli E24377A] Length = 454 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G + + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVEVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|260774545|ref|ZP_05883458.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii CIP 69.14] gi|260610451|gb|EEX35657.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii CIP 69.14] Length = 453 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W IK AD V +VD + D+ + R + +I NK+D Sbjct: 278 DEVEKIGIERAWEEIKQADRVLFMVDGTTTEATDPKDIWPDFVDRLPDQMGMTVIRNKVD 337 >gi|260580092|ref|ZP_05847922.1| tRNA modification GTPase TrmE [Haemophilus influenzae RdAW] gi|205371770|sp|P43730|MNME_HAEIN RecName: Full=tRNA modification GTPase mnmE gi|260093376|gb|EEW77309.1| tRNA modification GTPase TrmE [Haemophilus influenzae RdAW] Length = 452 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAI 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|145632387|ref|ZP_01788122.1| tRNA modification GTPase [Haemophilus influenzae 3655] gi|144987294|gb|EDJ93824.1| tRNA modification GTPase [Haemophilus influenzae 3655] Length = 452 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAI 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|302206113|gb|ADL10455.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis C231] Length = 540 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR V + + DT G Sbjct: 107 TVAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRVSYLADWGGQRFWVQDTGGWDPN 166 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + + AD++ +VVD+ KV I + +A++ R ++L+ NK Sbjct: 167 VKGIHGAIARQAEVAMATADVIIMVVDT----KVGITETDSVMARKLQRAEVPVLLVANK 222 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D + + AE + + + VSA G G DVL + + P P Sbjct: 223 FDS--DSQYADMAEF--YALALGDPWPVSAQHGRGGADVLEQVLAAFPEEP 269 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ G S+V + TT V +V + F+DT G + Sbjct: 281 VALVGKPNVGKSSLLNKISGEDRSVVDNASGTTVDPVDSLVQLDQKLWKFIDTAGLRKKV 340 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ ++DS + +L I + L+L+ NK Sbjct: 341 KNAQGHEYYASLRTR-GVIDAAEVCVFMIDSSEPVSEQDQRVLAMILEAGKALVLVFNKW 399 Query: 141 DCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 D + +R E EI +L I K +SA G + Y+ L Sbjct: 400 DLMDEDRRWELDREIDQQLAHIPWVKRVNISAKTGRALQKLEPYMLEAL 448 >gi|154248312|ref|YP_001419270.1| small GTP-binding protein [Xanthobacter autotrophicus Py2] gi|154162397|gb|ABS69613.1| small GTP-binding protein [Xanthobacter autotrophicus Py2] Length = 457 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR A+V T +R + ++I+ DT G + Sbjct: 225 VALVGYTNAGKSTLFNRLTRAEVMAKDLLFATLDPTLRAVDLPHGTRIILSDTVGFISEL 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHREL---KVNIHDLLKEIA---KRSSRLILIL 137 + R + + AD++ V D SH + ++ D+L+++ + R+I + Sbjct: 285 PTQLVAAFRATLEEVLEADLILHVRDISHPDTDAQAADVSDVLEDLGVDPQPGGRVIEVW 344 Query: 138 NKIDCVKPERLLEQAEIANKLV--FIEKTFMVSATKGHGCDDVLNYL 182 NKID + P+ E+ ++ N+ E VSA G G DD+L + Sbjct: 345 NKIDRLAPD---EREQVENRAARGGAEAPVPVSALTGEGTDDLLGLI 388 >gi|325962917|ref|YP_004240823.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3] gi|323469004|gb|ADX72689.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3] Length = 516 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR +G + ++V TR V + +DT G + Sbjct: 80 VLAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSANWNGRNFTLVDTGGWEHD 139 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + ++ AD V VVDS ++K + + +I++ NK+D Sbjct: 140 ARGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRRSKKPVIMVANKVDD- 198 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++A+ A L F E + VSA G G D+L+++ LP Sbjct: 199 ----FAQEADSATLWGLGFGEP-YPVSALHGRGVADLLDHVMDVLP 239 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 20/145 (13%) Query: 16 VQDNSRSGC---VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 ++ RSG +AL+G N GKS+L+N+ G + +V + TTR V + Sbjct: 244 IEGTDRSGGPRRIALIGRPNVGKSSLLNKLAGTERVVVDNTAGTTRDPVDEFIELGGRTW 303 Query: 73 VFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLL 123 F+DT GI D Y L + + + A +V L VD S +++++ Sbjct: 304 RFVDTAGIRRRQHMAQGADFYASLRTQAALEKAEVA-VVLLAVDEVLSEQDVRI------ 356 Query: 124 KEIAKRSSR-LILILNKIDCVKPER 147 ++A S R L+L NK D + ER Sbjct: 357 LQLAIESGRALVLAFNKWDLLDDER 381 >gi|319897487|ref|YP_004135684.1| tRNA modification gtpase mnme [Haemophilus influenzae F3031] gi|317432993|emb|CBY81364.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3031] Length = 452 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAI 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 277 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 336 Query: 142 C 142 Sbjct: 337 L 337 >gi|307243432|ref|ZP_07525588.1| tRNA modification GTPase TrmE [Peptostreptococcus stomatis DSM 17678] gi|306493156|gb|EFM65153.1| tRNA modification GTPase TrmE [Peptostreptococcus stomatis DSM 17678] Length = 459 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 11/159 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N +G +IVT TTR ++ V+ K + +DT G Sbjct: 219 REGLKTAILGKPNVGKSSLMNLILGEDRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S +K AD+ +V+DS R L +L+ I + S ++ILNK Sbjct: 279 IRATDDLVEKIGVEKSREHMKLADLALVVLDSSRPLDQEDIQILENIDQAKS--LVILNK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCD 176 D L Q +I + +++ +SA KG G D Sbjct: 337 TD------LACQMDIESLKSYVDTKNIINISALKGQGID 369 >gi|17232169|ref|NP_488717.1| tRNA modification GTPase TrmE [Nostoc sp. PCC 7120] gi|21363007|sp|Q8YN91|MNME_ANASP RecName: Full=tRNA modification GTPase mnmE gi|17133814|dbj|BAB76376.1| thiophen / furan oxidation protein [Nostoc sp. PCC 7120] Length = 459 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 17/134 (12%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------ 73 R+G VA+VG N GKS+L+N + + +IVT TTR +V ESQ+V Sbjct: 219 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV-------ESQLVVGGIPV 271 Query: 74 -FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 LDT GI D K+ + S AD+V L +D+ ++ +++ R Sbjct: 272 QVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRP-- 329 Query: 133 LILILNKIDCVKPE 146 LIL++NKID V+ + Sbjct: 330 LILVMNKIDLVEKQ 343 >gi|329565799|gb|AEB92236.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565803|gb|AEB92238.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565805|gb|AEB92239.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 185 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 244 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ ++ +LNK Sbjct: 245 IRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNK 302 Query: 140 IDCVKPERLLEQAEIAN 156 ID K +++ E+ N Sbjct: 303 IDLPKK---IDEKELKN 316 >gi|329123024|ref|ZP_08251595.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116] gi|327471955|gb|EGF17395.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116] Length = 461 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 226 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAI 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W+ I+ AD + L++DS ++ + E +AK S L ++ NKID Sbjct: 286 DEVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKID 345 Query: 142 C 142 Sbjct: 346 L 346 >gi|326390368|ref|ZP_08211927.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW 200] gi|325993645|gb|EGD52078.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW 200] Length = 462 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 15/145 (10%) Query: 13 KDFVQD------NSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS 59 K+ V+D +S SG + A++G N GKS+L+N + +IVT TTR Sbjct: 202 KEIVEDIDKLIASSESGMIIREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRD 261 Query: 60 IVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 I+ V+ K I +DT GI + + K+ + S + AD++ V+D+ REL Sbjct: 262 IIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKED 321 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 +++ + ++ ++ +LNKID K Sbjct: 322 YEIFDILVGKN--IVFVLNKIDLPK 344 >gi|299068431|emb|CBJ39655.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Ralstonia solanacearum CMR15] Length = 481 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 213 GQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 272 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V+ + + + +DT G+ + +D ++ I +W+ I AD+V ++D+ Sbjct: 273 TRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDAA---D 329 Query: 117 VNIHDLLKEIAKRSSRL----------ILILNKID---CVKPERLLEQ 151 H L E A +R+ + ++NKID P+R+ Q Sbjct: 330 YRAHGLSAEDATIDARIAEHVPSGVPTLRVINKIDLAGTAAPDRVDAQ 377 >gi|159162931|pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme Protein Length = 172 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 10/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 69 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W I+ AD V +VD V+ ++ E IA+ ++L ++ NK D Sbjct: 70 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 129 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 L +E+ N I +SA G G D + N+L ++ + Sbjct: 130 ITG--ETLGMSEV-NGHALIR----LSARTGEGVDVLRNHLKQSMGI 169 >gi|329565795|gb|AEB92234.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 185 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 244 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ ++ +LNK Sbjct: 245 IRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNK 302 Query: 140 IDCVK 144 ID K Sbjct: 303 IDLPK 307 >gi|329114596|ref|ZP_08243355.1| GTP-binding protein EngA [Acetobacter pomorum DM001] gi|326696076|gb|EGE47758.1| GTP-binding protein EngA [Acetobacter pomorum DM001] Length = 479 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 5/168 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 V + G N GKSTL NR VG + ++V TR G+ + + +DT G+ Sbjct: 21 VVVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEGVALIRGRYVRLIDTAGLEEA 80 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A DS M S S ++ AD+V VD+ + + I +++ ++L+ NK + Sbjct: 81 APDSLFGRMRFSSESAVREADLVLFCVDARAGITPADEHFAQWIRRQNRPVLLVANKTEG 140 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 RL + + + + + +SA G G D++ + LP P Sbjct: 141 ----RLGTASAMEAYALGLGEPLALSAEHGEGVTDLMWEIADRLPAEP 184 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 8/139 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N +G + I + TR + + + + +DT G+ Sbjct: 215 VAIVGRPNAGKSTLMNALLGEERMITGPEAGLTRDSIAVTLRDGDDTFEIVDTAGLRKKA 274 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRL-ILILNK 139 +S K+ + + +K A++ LV+D+ L V+ DL + + +R R +L LNK Sbjct: 275 RIDESLEKMSVSAAIEALKMAEVAVLVLDAT--LGVHEQDLQIARLIEREGRACVLALNK 332 Query: 140 IDCVKPERLLEQAEIANKL 158 D V+ +R+ + I ++L Sbjct: 333 WDAVQ-DRVATRNAILDRL 350 >gi|323164682|gb|EFZ50477.1| tRNA modification GTPase TrmE [Shigella sonnei 53G] Length = 454 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G + + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVEVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|282862300|ref|ZP_06271362.1| GTP-binding proten HflX [Streptomyces sp. ACTE] gi|282562639|gb|EFB68179.1| GTP-binding proten HflX [Streptomyces sp. ACTE] Length = 506 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 20/207 (9%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + ++ VA+ G TNAGKS+L+NR GA V + T V Sbjct: 264 EIAEMKTGREIKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 323 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKV 117 R + DT G + R + + +D++ VVD E Sbjct: 324 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGAHPVPEEQLA 383 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++++ R I+++NK D P E+ +L+ EK VSA G G D Sbjct: 384 AVREVIRDVGAVDVREIVVVNKADAADP-------EVLQRLLRNEKYAIAVSARTGAGID 436 Query: 177 DVLNYLCSTLP--------LAPWVYSA 195 ++L + + LP L P+V A Sbjct: 437 ELLALIDAELPRPSVEIEALVPYVQGA 463 >gi|57167879|ref|ZP_00367019.1| tRNA modification GTPase TrmE [Campylobacter coli RM2228] gi|305432095|ref|ZP_07401262.1| tRNA modification GTPase TrmE [Campylobacter coli JV20] gi|57021001|gb|EAL57665.1| tRNA modification GTPase TrmE [Campylobacter coli RM2228] gi|304445179|gb|EFM37825.1| tRNA modification GTPase TrmE [Campylobacter coli JV20] Length = 442 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 62/117 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + K +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYKRAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ I LS +I+ ADI+ + D+ R+ ++ K +++ ++ +LNK D Sbjct: 277 DEIEQIGIELSKKSIEDADIILAIFDNSRKKDEEDENIFKLLSQSDKKIFYLLNKSD 333 >gi|262118592|pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp, Folinic Acid And Zn Length = 462 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 17/134 (12%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------ 73 R+G VA+VG N GKS+L+N + + +IVT TTR +V ESQ+V Sbjct: 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV-------ESQLVVGGIPV 274 Query: 74 -FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 LDT GI D K+ + S AD+V L +D+ ++ +++ R Sbjct: 275 QVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRP-- 332 Query: 133 LILILNKIDCVKPE 146 LIL++NKID V+ + Sbjct: 333 LILVMNKIDLVEKQ 346 >gi|229181730|ref|ZP_04309053.1| tRNA modification GTPase mnmE [Bacillus cereus 172560W] gi|228601763|gb|EEK59261.1| tRNA modification GTPase mnmE [Bacillus cereus 172560W] Length = 458 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKEFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER+ E A Sbjct: 336 TDLPQAIDMERVTELA 351 >gi|226326927|ref|ZP_03802445.1| hypothetical protein PROPEN_00787 [Proteus penneri ATCC 35198] gi|225204764|gb|EEG87118.1| hypothetical protein PROPEN_00787 [Proteus penneri ATCC 35198] Length = 454 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 17/179 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DDVRAQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ A D ++ I +W I+ AD V +VDS D+ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDSTTTDATTPEDIWPEF 320 Query: 127 AKRSSRLI---LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + +I NK D E AEI + + +SA G G + + ++L Sbjct: 321 MARLPNTLPVTVIRNKSDLTG-----ENAEITAQGNY--PMIRLSARDGMGIELLRDHL 372 >gi|157163187|ref|YP_001460505.1| tRNA modification GTPase TrmE [Escherichia coli HS] gi|194435686|ref|ZP_03067789.1| tRNA modification GTPase TrmE [Escherichia coli 101-1] gi|218697429|ref|YP_002405096.1| tRNA modification GTPase TrmE [Escherichia coli 55989] gi|253775659|ref|YP_003038490.1| tRNA modification GTPase TrmE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163658|ref|YP_003046766.1| tRNA modification GTPase TrmE [Escherichia coli B str. REL606] gi|297520056|ref|ZP_06938442.1| tRNA modification GTPase TrmE [Escherichia coli OP50] gi|307313225|ref|ZP_07592850.1| tRNA modification GTPase TrmE [Escherichia coli W] gi|309795744|ref|ZP_07690159.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7] gi|312972002|ref|ZP_07786176.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70] gi|331655368|ref|ZP_08356367.1| tRNA modification GTPase TrmE [Escherichia coli M718] gi|331670551|ref|ZP_08371390.1| tRNA modification GTPase TrmE [Escherichia coli TA271] gi|166991108|sp|A8A6G8|MNME_ECOHS RecName: Full=tRNA modification GTPase mnmE gi|254811477|sp|B7L851|MNME_ECO55 RecName: Full=tRNA modification GTPase mnmE gi|157068867|gb|ABV08122.1| tRNA modification GTPase TrmE [Escherichia coli HS] gi|194425229|gb|EDX41213.1| tRNA modification GTPase TrmE [Escherichia coli 101-1] gi|218354161|emb|CAV00765.1| GTPase [Escherichia coli 55989] gi|242379246|emb|CAQ34051.1| GTP-binding protein with a role in modification of tRNA, subunit of complex involved in modification of tRNA [Escherichia coli BL21(DE3)] gi|253326703|gb|ACT31305.1| tRNA modification GTPase TrmE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975559|gb|ACT41230.1| tRNA modification GTPase [Escherichia coli B str. REL606] gi|253979715|gb|ACT45385.1| tRNA modification GTPase [Escherichia coli BL21(DE3)] gi|306906908|gb|EFN37417.1| tRNA modification GTPase TrmE [Escherichia coli W] gi|308120623|gb|EFO57885.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7] gi|310334379|gb|EFQ00584.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70] gi|315063012|gb|ADT77339.1| GTPase [Escherichia coli W] gi|320201266|gb|EFW75847.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli EC4100B] gi|323380926|gb|ADX53194.1| tRNA modification GTPase TrmE [Escherichia coli KO11] gi|323939230|gb|EGB35443.1| tRNA modification GTPase TrmE [Escherichia coli E482] gi|323959772|gb|EGB55422.1| tRNA modification GTPase TrmE [Escherichia coli H489] gi|323971184|gb|EGB66430.1| tRNA modification GTPase TrmE [Escherichia coli TA007] gi|331047383|gb|EGI19461.1| tRNA modification GTPase TrmE [Escherichia coli M718] gi|331062613|gb|EGI34533.1| tRNA modification GTPase TrmE [Escherichia coli TA271] Length = 454 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G + + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVEVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|218291088|ref|ZP_03495111.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius LAA1] gi|218238973|gb|EED06180.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius LAA1] Length = 465 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 10/186 (5%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 MGEI + + A+VG N GKS+L+N V +IVT TTR ++ Sbjct: 208 MGEIDSLIRSAELGRVLRDGVATAIVGRPNVGKSSLLNALVERDRAIVTDLPGTTRDVLE 267 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 ++ + + +DT GI +D ++ + S +++ A++V LV+D + Sbjct: 268 EYINLRGIPLRLIDTAGIRETEDVVERIGVARSRESMQKAELVLLVLDGSEPPSPEDEAI 327 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLL--EQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +E SR I++LNKID R + E A +A++L E VSA +G G D + + Sbjct: 328 ARE--SDGSRRIVVLNKID-----RGIHAEAARLADELAP-EGAVRVSAREGTGLDTLRD 379 Query: 181 YLCSTL 186 + + + Sbjct: 380 AIVNKI 385 >gi|37999700|sp|Q8FTK5|DER_COREF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 528 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 14/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + + + DT G Sbjct: 91 TVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLSDWGGQRFWVQDTGGWDPN 150 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + + + AD++ VVD+ KV I + +A++ R +IL+ NK Sbjct: 151 VKGIHASIAHQAELAMASADVIVFVVDT----KVGITETDAVMARKLKRADVPVILVANK 206 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D + A++A + F VSA G G DVL+ + + P P Sbjct: 207 FDSDS-----QWADMAEFYALGLGDPFPVSAQHGRGGADVLDKILESFPEEP 253 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+F G + S+V + TT V I+ + F+DT G+ Sbjct: 265 VALVGKPNVGKSSLLNKFAGEERSVVDNVAGTTVDPVDSIIQLDQKMWKFIDTAGLRKKV 324 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + Y L R S I A++ L++DS + +L I L++ N Sbjct: 325 KTATGHEFYASLRTR---SVIDSAEVCVLLIDSSEPITEQDQRVLAMITDAGKALVVAFN 381 Query: 139 KIDCVKPERLLE 150 K D + +R E Sbjct: 382 KWDLMDEDRRWE 393 >gi|332702562|ref|ZP_08422650.1| tRNA modification GTPase mnmE [Desulfovibrio africanus str. Walvis Bay] gi|332552711|gb|EGJ49755.1| tRNA modification GTPase mnmE [Desulfovibrio africanus str. Walvis Bay] Length = 521 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%) Query: 21 RSGCVA-LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V L G NAGKS+L+N +G + +IV+ TTR + +S + +DT G Sbjct: 226 REGAVVVLAGPVNAGKSSLLNALLGRERAIVSDTPGTTRDWLEESISLDGLPVRLVDTAG 285 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + D+ +R S ++ AD+V LV+D + L E+ + RL+L++NK Sbjct: 286 LRETADAVELEGVRRSRELLERADLVLLVLDGGQPADPAALALAHEVGPQ--RLLLVMNK 343 Query: 140 IDCVKPE 146 ID + PE Sbjct: 344 ID-LAPE 349 >gi|329565801|gb|AEB92237.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 185 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 244 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ ++ +LNK Sbjct: 245 IRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNK 302 Query: 140 IDCVK 144 ID K Sbjct: 303 IDLPK 307 >gi|238028966|ref|YP_002913197.1| tRNA modification GTPase TrmE [Burkholderia glumae BGR1] gi|237878160|gb|ACR30493.1| TRNA modification GTPase TrmE [Burkholderia glumae BGR1] Length = 472 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 25/211 (11%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLARIRERLARVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ L Sbjct: 261 TRDKVAQTIQIEGIPLHIVDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDAREGLG 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVKPERLL------EQAEIANKLVFIEKTFMV 167 + + IA R ++ + NK D + QA+ A L E + Sbjct: 321 ADD----RAIAGRFPAGVPVVRVFNKTDLTDAPPAVAHLGGHAQADAAGGLDLSE--VRL 374 Query: 168 SATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 SA +G G D + L L +A W A+ + Sbjct: 375 SAKRGDGIDLLRAEL---LRIAGWQAGAESV 402 >gi|227484953|ref|ZP_03915269.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172] gi|227237108|gb|EEI87123.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172] Length = 439 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 7/175 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 V LVG TN GKSTL NR VG + SI TR + + ++ + +DT GI ++ Sbjct: 6 VTLVGRTNVGKSTLFNRLVGKRKSITEDVSGVTRDRIVDKAEWQNNEFLLVDTGGIDISS 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 KD + + + +++ VVD + + D+ EI K + +I++ NK+D + Sbjct: 66 KDMMNVEIRGQVEKALLETNLILFVVDGKEGVNPHDVDIANEIRKYNKPVIIVANKVDNM 125 Query: 144 K-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + P+ L + + M+SA + G D+L+ + S + + + + D+ Sbjct: 126 QVPDDLYDFYSFG-----FDNLVMISAEQAKGLGDLLDAIISYIDFSQFEGNDDE 175 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 14 DFVQ--DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 DF Q N +A++G NAGKS+LVN + IVT TTR V + + Sbjct: 165 DFSQFEGNDDETRIAIIGKPNAGKSSLVNLLLNEDRMIVTDIAGTTRDAVDSYWTYNDHN 224 Query: 72 IVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 V +DT G+ K++ + ++ + A+I ++D+ Sbjct: 225 YVLIDTAGLRRKSKVKENIEYYANQRTFDAVDSAEICLFLIDA 267 >gi|254451323|ref|ZP_05064760.1| GTP-binding proten HflX [Octadecabacter antarcticus 238] gi|198265729|gb|EDY89999.1| GTP-binding proten HflX [Octadecabacter antarcticus 238] Length = 449 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 78/170 (45%), Gaps = 12/170 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + +++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRLSGADVFAHDMLFATLDPTMRKVELPNGDEVIMSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEI-AKRSSRLILILN 138 + R + + ADI+ V D SH E K + D L+++ +I +LN Sbjct: 264 LPTQLVASFRATLEEVLEADIILHVRDISHPQSAEQKKAVLDTLRQLDVNPDVPMIEVLN 323 Query: 139 KIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID ++PE L+ N +K F +SA G G D +LN + L Sbjct: 324 KIDLLEPEDAGYLQALHKDN-----DKVFGISAVTGEGLDRLLNDVTDHL 368 >gi|74314021|ref|YP_312440.1| tRNA modification GTPase TrmE [Shigella sonnei Ss046] gi|123615900|sp|Q3YWA7|MNME_SHISS RecName: Full=tRNA modification GTPase mnmE gi|73857498|gb|AAZ90205.1| GTP-binding protein in thiophene and furan oxidation [Shigella sonnei Ss046] gi|323173325|gb|EFZ58954.1| tRNA modification GTPase TrmE [Escherichia coli LT-68] Length = 454 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G + + N+L Sbjct: 321 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVEVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|325567648|ref|ZP_08144315.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC 12755] gi|325159081|gb|EGC71227.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC 12755] Length = 481 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 241 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 300 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + A+++ LV++ L LL+ A SR I++LNK Sbjct: 301 IRETEDVVEKIGVERSRKALAEAELILLVLNQSEGLTQEDKQLLELTA--GSRRIILLNK 358 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D ++P+ L AE+A + E F VS G D + Sbjct: 359 TD-LEPK--LAPAELA-QYAADEPIFSVSVLTNEGLDQL 393 >gi|293394879|ref|ZP_06639169.1| ribosome-associated GTPase EngA [Serratia odorifera DSM 4582] gi|291422630|gb|EFE95869.1| ribosome-associated GTPase EngA [Serratia odorifera DSM 4582] Length = 497 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + ++ + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSRRKATFLVANKTDGM 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 211 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRG 270 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL I L++ +NK D Sbjct: 271 KVTETVEKFSVIKTLQAIEDANVVLLVVDAREGISDQDLSLLGFILNSGRSLVIAVNKWD 330 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E+ + +L F++ + +SA G G ++ Y C+T Sbjct: 331 GMSEEDRDHVKEMLDLRLGFVDFARVHFISALHGSGVGNLFESVQEAYECAT 382 >gi|257875886|ref|ZP_05655539.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20] gi|257810052|gb|EEV38872.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20] Length = 481 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 241 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 300 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + A+++ LV++ L LL+ A SR I++LNK Sbjct: 301 IRETEDVVEKIGVERSRKALAEAELILLVLNQSEGLTQEDKQLLELTA--GSRRIILLNK 358 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D ++P+ L AE+A + E F VS G D + Sbjct: 359 TD-LEPK--LAPAELA-QYAADEPIFSVSVLTSEGLDQL 393 >gi|258515338|ref|YP_003191560.1| GTP-binding protein EngA [Desulfotomaculum acetoxidans DSM 771] gi|257779043|gb|ACV62937.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771] Length = 443 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR VGA+V+IV + TR + + +DT GI F Sbjct: 5 IVAIVGRPNVGKSTLFNRIVGARVAIVEGQPGITRDRLYQEAEWSGRSFMLVDTGGIDFQ 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + + I+ AD+V VVD+ L + ++ + + + ++L+ NK++ Sbjct: 65 ENDEIVSNVRHQARLAIEEADLVLFVVDARSGLLGSDEEVANILRRTDTPVLLVANKVEN 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 E + E + + + + VSA +G D+L+ + + LPL Sbjct: 125 FSLEDNPQFLEFYS--LGLGEPIPVSAAEGKNTGDLLDQVITLLPL 168 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 11/127 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+LVN +G + IV++ TTR + + V +DT GI Sbjct: 181 IAVIGRPNVGKSSLVNSILGQERVIVSNVPGTTRDAIDTPFERDDKHYVLIDTAGIRRKS 240 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 Y K + S I +D+ +V+D+ + D K IA ++ I+I+ Sbjct: 241 RIYISTEKYSVLRSLKAIDRSDVALIVLDAEE----GVTDQDKRIAGYAHEKGKASIIII 296 Query: 138 NKIDCVK 144 NK D ++ Sbjct: 297 NKWDLIE 303 >gi|229087972|ref|ZP_04220079.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-44] gi|228695341|gb|EEL48219.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-44] Length = 326 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 8/177 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 86 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 145 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L + +L + A + I+I+NK Sbjct: 146 IRETEDVVERIGVERSKEMMGQADLVLIVVNYSEALTIEDEELFR--AVQGKDFIVIVNK 203 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D P+++ E KL + S + G D+ L + L + SAD Sbjct: 204 TDL--PKQI--DMERVTKLAGDNRIITTSLIEEKGVDE-LEKAIADLFFEGAIESAD 255 >gi|46445656|ref|YP_007021.1| tRNA modification GTPase TrmE [Candidatus Protochlamydia amoebophila UWE25] gi|81829092|sp|Q6MFA3|MNME_PARUW RecName: Full=tRNA modification GTPase mnmE gi|46399297|emb|CAF22746.1| probable GTP-binding protein in thiophene and furan oxidation [Candidatus Protochlamydia amoebophila UWE25] Length = 458 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 3/124 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L+G N GKS+L+N + +IV+ TTR ++ + I DT GI A Sbjct: 228 ICLIGCPNVGKSSLMNALLDKDRAIVSPIPGTTRDVLEDHLRLNGLHIKLSDTAGIREAN 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 +S + IR S ++ AD++ LV+D+H+ L+ +LLK++ + I+I NKID + Sbjct: 288 ESVEQEGIRRSKKAMQEADLILLVLDAHKGLEKEDQELLKQVPFH--KTIVIWNKID-LN 344 Query: 145 PERL 148 P L Sbjct: 345 PRNL 348 >gi|282851786|ref|ZP_06261149.1| conserved domain protein [Lactobacillus gasseri 224-1] gi|282557028|gb|EFB62627.1| conserved domain protein [Lactobacillus gasseri 224-1] Length = 95 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 2/90 (2%) Query: 39 VNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWST 98 +N VG KV+I++ + QTTR+ + GI ++ + QIVF+DTPGI K+ M + S+S Sbjct: 1 MNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPKNKLDDFMDKSSYSA 60 Query: 99 IKHADIVCLVVDSHRELKVN--IHDLLKEI 126 + D+V +V+ K + I +LLK+I Sbjct: 61 LDEVDVVLFMVEPEPAGKGDQYIAELLKKI 90 >gi|255021269|ref|ZP_05293318.1| GTP-binding protein EngA [Acidithiobacillus caldus ATCC 51756] gi|254969280|gb|EET26793.1| GTP-binding protein EngA [Acidithiobacillus caldus ATCC 51756] Length = 447 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTLVN +G + IV TTR +R V +DT GI Sbjct: 180 IAVLGRPNVGKSTLVNAMLGEQRVIVYDAPGTTRDSIRIPYERAGRPYVMIDTAGIRRRA 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + KL + + + +K AD+V +V+D+ + L+ A+ +IL+LNK D Sbjct: 240 RVGEGLEKLSVLKTLAALKEADVVLMVLDARDGVTDQDAHLVGVAAELWRPMILLLNKWD 299 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 + R + +A + L F+ + +SA G G D+ Sbjct: 300 GLDARARQMAKAALERHLGFLSYAPVYTISALHGSGVGDL 339 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 13/170 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 + +ALVG N GKSTL NR ++ ++V TR G+ + + +DT G Sbjct: 2 AAVIALVGRPNVGKSTLFNRLTRSREALVADLPGLTRDRHYGVAQHGTQRFLVIDTGGFE 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ M + I AD VC +VD+ L ++ E+ + + L++NK+ Sbjct: 62 PEEREGLVAAMAAQTRQAIAEADAVCFLVDAKEGLSAQDEEIAAELRRSGKTVYLVVNKM 121 Query: 141 DCVKPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVLNYLCSTL 186 D + +A F + + ++A+ GHG + +L+ + + L Sbjct: 122 DV--------RGAVAELPEFHRLGLGMPYTIAASHGHGVETLLDAIFADL 163 >gi|300858400|ref|YP_003783383.1| hypothetical protein cpfrc_00982 [Corynebacterium pseudotuberculosis FRC41] gi|300685854|gb|ADK28776.1| hypothetical protein cpfrc_00982 [Corynebacterium pseudotuberculosis FRC41] gi|302330667|gb|ADL20861.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis 1002] gi|308276351|gb|ADO26250.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis I19] Length = 540 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNRF+G + ++V TR V + + DT G Sbjct: 107 TVAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRVSYLADWGGQRFWVQDTGGWDPN 166 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 H + R + + AD++ +VVD+ KV I + +A++ R ++L+ NK Sbjct: 167 VKGIHGAIARQAEVAMATADVIIMVVDT----KVGITETDSVMARKLQRAEVPVLLVANK 222 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D + + AE + + + VSA G G DVL + + P P Sbjct: 223 FDS--DSQYADMAEF--YALGLGDPWPVSAQHGRGGADVLEQVLAAFPEEP 269 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ G S+V + TT V +V + F+DT G + Sbjct: 281 VALVGKPNVGKSSLLNKISGEDRSVVDNASGTTVDPVDSLVQLDQKLWKFIDTAGLRKKV 340 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 NA+ + +R I A++ ++DS + +L I + L+L+ NK Sbjct: 341 KNAQGHEYYASLRTR-GVIDAAEVCVFMIDSSEPVSEQDQRVLAMILEAGKALVLVFNKW 399 Query: 141 DCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 D + +R E EI +L I K +SA G + Y+ L Sbjct: 400 DLMDEDRRWELDREIDQQLAHIPWVKRVNISAKTGRALQKLEPYMLEAL 448 >gi|298373119|ref|ZP_06983109.1| ribosome-associated GTPase EngA [Bacteroidetes oral taxon 274 str. F0058] gi|298276023|gb|EFI17574.1| ribosome-associated GTPase EngA [Bacteroidetes oral taxon 274 str. F0058] Length = 438 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 9/183 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKSTL NR ++ +IV + TTR G V + +DT G + Sbjct: 2 SNIVAIVGRPNVGKSTLFNRLTKSRRAIVNDEAGTTRDRHYGKVEWNGKEFSVIDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 ++D + + + R I+ AD++ VVD + ++ + ++ ++S + +I++ NK Sbjct: 62 VGSEDIFEEEINRQVSIAIEEADVILFVVDVLSGV-TDLDMFVAQVLRKSGKNVIVVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D L QA L + F++S+ G G D+L+ + + P A+ + Sbjct: 121 VDTFD---LQYQATEFYSLG-LGDPFILSSVNGLGSGDLLDEVLNRFPKNE--KEAENLD 174 Query: 200 DLP 202 DLP Sbjct: 175 DLP 177 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A+VG NAGKS+LVN F+ +IVT TTR + ++ +DT GI Sbjct: 179 LAVVGRPNAGKSSLVNAFLDDNRNIVTEIAGTTRDSIYTRYNKFGYDFYLVDTAGIRKKA 238 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ ++ + I+++D+ L++D+ R ++ ++ I K L++ +NK Sbjct: 239 KVNEDVEYYSVIRAI--RAIENSDVCVLMIDAERGIESQDLNIFSLIQKNKKGLVVCVNK 296 Query: 140 IDCVK 144 D ++ Sbjct: 297 WDLIE 301 >gi|13508214|ref|NP_110163.1| GTP-binding protein EngA [Mycoplasma pneumoniae M129] gi|8247924|sp|P75309|DER_MYCPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|11379528|gb|AAG34744.1|AE000034_1 GTPase [Mycoplasma pneumoniae M129] gi|301633464|gb|ADK87018.1| ribosome-associated GTPase EngA [Mycoplasma pneumoniae FH] Length = 449 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 117/270 (43%), Gaps = 34/270 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKS+L NR + +I++ TTR + G+ QI F+DT G+ + Sbjct: 3 TVAIIGRPNVGKSSLFNRLIQKPYAIISDTPNTTRDRIYGVGEWLTRQIAFIDTGGLISQ 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 K + + + + A+ + +V ++ + + +LK+I + ++L++NK Sbjct: 63 KTPLQQQIEVQVRAALSQANAIIFLVSYQEQISSDDFYVAKVLKKIKDKP--ILLVVNKS 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + +KP+ + F + VSA+ G G ++++ L + Sbjct: 121 ENLKPDAYEPNLQQFYSFGF-GQPVCVSASHGIGIGNLMDRLVKD-------------NQ 166 Query: 201 LPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKK----DGSILIRQVIYVERPSQK 256 LP +H ++E E F + K S ++ + ++ + D S R I Sbjct: 167 LPPYHGSSETNPEVRFCVIGKPNVGKSSLINQLVQQNRVLVSDESGTTRDAI-------- 218 Query: 257 KIMLGKNGQN---IKTISLEAKKEIAEILE 283 I L NGQN I T + K +IA +E Sbjct: 219 DIPLRVNGQNYLLIDTAGIRRKGKIAPGIE 248 >gi|325912241|ref|ZP_08174638.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D] gi|325475900|gb|EGC79069.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D] Length = 461 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 3/124 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG A+VG N GKS+L+N + +IVT TTR + VS K + +DT G Sbjct: 222 RSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTSIAGTTRDTLEEYVSLKGILLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L+++S EL LL E+ + R I+ILNK Sbjct: 282 IRQTDDIVEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLL-ELTQDKKR-IIILNK 339 Query: 140 IDCV 143 D V Sbjct: 340 ADQV 343 >gi|256846327|ref|ZP_05551784.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_36A2] gi|256718096|gb|EEU31652.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_36A2] Length = 440 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 3/134 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +++ +A++G NAGKS+LVN+ G + +IV+ TTR + ++ K+++ + Sbjct: 168 DFPEEDEEVLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYM 227 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT GI ++S + + IK AD+ L++D+ L + A+ Sbjct: 228 IIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEEL 287 Query: 131 SRLILILNKIDCVK 144 +I+++NK D VK Sbjct: 288 KPIIIVMNKWDLVK 301 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG K++IV TR + S+ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDAEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ +VD K ++ L +EIA K++ +IL + Sbjct: 65 NDF--LMAKIKEQAEVAMNEADVILFIVDG----KSGLNPLDEEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|323491635|ref|ZP_08096814.1| GTP-binding protein Der [Vibrio brasiliensis LMG 20546] gi|323314211|gb|EGA67296.1| GTP-binding protein Der [Vibrio brasiliensis LMG 20546] Length = 494 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 4/181 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L + + K +L++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTAADEAIASHLRKIEKPSMLVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 + AE + +E + ++A G G +++ + ++ +I DL Sbjct: 124 DAD--AASAEFWQ--LGVENMYQIAAAHGRGVTALIDLALNPFAEKLMEETSGEIEDLTD 179 Query: 204 F 204 F Sbjct: 180 F 180 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRT 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLKAVEDANVVMLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWD 327 Query: 142 CVKPERLLEQA--EIANKLVFIE--KTFMVSATKGHGC 175 + + + EQ E+ +L F++ + +SA G G Sbjct: 328 GLDMD-VKEQVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|120600873|ref|YP_965447.1| tRNA modification GTPase TrmE [Shewanella sp. W3-18-1] gi|166991118|sp|A1RQE8|MNME_SHESW RecName: Full=tRNA modification GTPase mnmE gi|120560966|gb|ABM26893.1| tRNA modification GTPase trmE [Shewanella sp. W3-18-1] gi|319428592|gb|ADV56666.1| tRNA modification GTPase TrmE [Shewanella putrefaciens 200] Length = 453 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 VVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D+ ++ I +W+ I AD V +VD V+ HD+ + R + + +I NK D Sbjct: 278 DTVEQIGIERAWNEINSADRVLFMVDGTTTDAVDPHDIWPDFINRLPANLGVTVIRNKAD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E ++ + + + +SA G G D++ +L S + Sbjct: 338 LTG-----ENLDMTEEKGY--SVYRISAKTGLGVDELKLHLKSLM 375 >gi|73543138|ref|YP_297658.1| tRNA modification GTPase TrmE [Ralstonia eutropha JMP134] gi|123623715|sp|Q46VM0|MNME_RALEJ RecName: Full=tRNA modification GTPase mnmE gi|72120551|gb|AAZ62814.1| tRNA modification GTPase trmE [Ralstonia eutropha JMP134] Length = 475 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 8/128 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 V L G N GKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 222 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVKETIQIEGIPLHIIDTAGLRDE 281 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-------SSRLIL 135 A D ++ I +W I+ ADIV +VD+ L+ + ++ I R + ++ Sbjct: 282 ATDEVERIGIERTWDAIRRADIVLHLVDATDYLRHGLSEIDDAIDDRLSGQLPPGAPIVR 341 Query: 136 ILNKIDCV 143 ++NKID Sbjct: 342 VVNKIDVA 349 >gi|146295079|ref|YP_001185503.1| tRNA modification GTPase TrmE [Shewanella putrefaciens CN-32] gi|166991116|sp|A4YCM1|MNME_SHEPC RecName: Full=tRNA modification GTPase mnmE gi|145566769|gb|ABP77704.1| tRNA modification GTPase trmE [Shewanella putrefaciens CN-32] Length = 453 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 VVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D+ ++ I +W+ I AD V +VD V+ HD+ + R + + +I NK D Sbjct: 278 DTVEQIGIERAWNEINSADRVLFMVDGTTTDAVDPHDIWPDFINRLPANLGVTVIRNKAD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E ++ + + + +SA G G D++ +L S + Sbjct: 338 LTG-----ENLDMTEEKGY--SVYRISAKTGLGVDELKLHLKSLM 375 >gi|330969066|gb|EGH69132.1| GTP-binding protein Der [Pseudomonas syringae pv. aceris str. M302273PT] Length = 490 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 316 WDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSA 368 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGGHGRGISQMLEIALREFP 163 >gi|309389060|gb|ADO76940.1| ribosome-associated GTPase EngA [Halanaerobium praevalens DSM 2228] Length = 438 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG + +IV + TR + G + +DT GI Sbjct: 5 TVAIVGRPNVGKSTLFNRLVGGRRAIVEGEPNVTRDRIYGETEWLGKKFNVIDTGGIVLH 64 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + K I+ ++ AD++ VVDS + D+ + + + + +IL++NK+ Sbjct: 65 DNDKIKNQIKYQAEIAMEEADLILFVVDSRTGMTGVDEDIAQLLYRTNKEVILVVNKV-- 122 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E Q EI + + F++SA G +L+ + + LP Sbjct: 123 ---EDFSNQEEIGWEFYSLGFGTPFLISAEHGKNTGQLLDQVKANLP 166 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 18/171 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A++G N GKS+LVN +G K IV+ TTR V ++ K+ F+DT G+ Sbjct: 180 IAVIGKPNVGKSSLVNHLIGKKRVIVSDMPGTTRDAVDTMIKWKDISFNFIDTAGLRRKS 239 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 +D + +R + ++ AD V +++D+ + D K+IA +++ Sbjct: 240 RVKEDVEYYSNLR-ALRSVDRADAVLMMIDAQE----GVTDQDKKIAGYAHDEGKAMVIA 294 Query: 137 LNKIDCVKP-----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +NK D ++ +R ++ K + +SA G D++L+ L Sbjct: 295 INKWDLMEKDSGTMDRYTDEVYYQLKFLNYVPVTYISALTGERIDELLSLL 345 >gi|182416744|ref|ZP_02948141.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521] gi|237669621|ref|ZP_04529599.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379401|gb|EDT76896.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521] gi|237654855|gb|EEP52417.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E BL5262] Length = 460 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 14/161 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + +VG N GKS+L+N + K +IVT TTR I+ ++ I DT G Sbjct: 224 RDGLNIVIVGKPNVGKSSLLNSLLREKRAIVTDIPGTTRDIIEEYINLDGIPIKITDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D+ K+ + S I+ AD+V L++D+ R L ++ I + + I +LNK Sbjct: 284 IRDTEDTVEKIGVERSKEKIEEADLVILMLDTSRALDDEDRVIIDAINDK--KYIALLNK 341 Query: 140 ID--CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +D C E ++ + +T +SA G G +++ Sbjct: 342 VDLECKLSEEVITS---------LNRTIEISAKTGFGIENL 373 >gi|307709441|ref|ZP_07645898.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564] gi|307619755|gb|EFN98874.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564] Length = 457 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGIPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQETNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|331092106|ref|ZP_08340937.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 2_1_46FAA] gi|330402307|gb|EGG81878.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 2_1_46FAA] Length = 463 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N VG + +IVT TTR ++ + + + +DT GI KD Sbjct: 231 IVGKPNAGKSSLLNVLVGEERAIVTDIEGTTRDVLEENIQLQGVSLNIMDTAGIRETKDV 290 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + + AD++ V D+ R L N ++++ I R + I++LNK D Sbjct: 291 VEKIGVDKAKNHANEADLIIYVADASRPLDDNDEEIIEMI--RDKQAIVLLNKSDL 344 >gi|329565793|gb|AEB92233.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565813|gb|AEB92243.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 185 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 244 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ ++ +LNK Sbjct: 245 IRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNK 302 Query: 140 IDCVKPERLLEQAEIAN 156 ID K +++ E+ N Sbjct: 303 IDLPKK---IDEKELKN 316 >gi|307731534|ref|YP_003908758.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003] gi|307586069|gb|ADN59467.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003] Length = 464 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 7/123 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D K+ I +WS I+ AD+V ++D+ + + IAKR ++ +LNK Sbjct: 288 EDEVEKIGIARTWSEIERADVVLHLLDARTGMTAED----ETIAKRFPAGVPVVRVLNKT 343 Query: 141 DCV 143 D V Sbjct: 344 DLV 346 >gi|329769256|ref|ZP_08260673.1| tRNA modification GTPase TrmE [Gemella sanguinis M325] gi|328839250|gb|EGF88833.1| tRNA modification GTPase TrmE [Gemella sanguinis M325] Length = 460 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+L+N + +IVT TTR ++ V+ K I +DT GI D Sbjct: 226 AIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDD 285 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ ++ S ++ AD+V +++S EL + +LLK +++ I+ILNK+D Sbjct: 286 IVEQIGVQRSKDALEKADLVLFLLNSSEELTEDDKELLKLTKGKTT--IVILNKLD 339 >gi|300932339|ref|ZP_07147606.1| tRNA modification GTPase TrmE [Escherichia coli MS 187-1] gi|300459909|gb|EFK23402.1| tRNA modification GTPase TrmE [Escherichia coli MS 187-1] Length = 474 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 221 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 280 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ E Sbjct: 281 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 340 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D L +E+ N I +SA G G + + N+L Sbjct: 341 IARLPAKLPITVVRNKADITG--ETLGMSEV-NGHALIR----LSARTGEGVEVLRNHLK 393 Query: 184 STL 186 ++ Sbjct: 394 QSM 396 >gi|22298421|ref|NP_681668.1| GTP-binding protein EngA [Thermosynechococcus elongatus BP-1] gi|34222551|sp|Q8DKI1|DER_THEEB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|22294600|dbj|BAC08430.1| GTP-binding protein [Thermosynechococcus elongatus BP-1] Length = 449 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G N GKS+L+N +G+ +IV+ TTR + ++ +Q F+DT GI Sbjct: 179 VAIAGRPNVGKSSLLNALIGSDRAIVSPISGTTRDAIDTVIEHGGTQYRFIDTAGIRKRT 238 Query: 85 D-SYHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +Y M + ++ I +D+V LV+D+ E+ L IA + +LI+NK D Sbjct: 239 HVAYGPEMFSVHRAFKAIHRSDVVLLVLDALEEITEQDQRLAGHIADQGRACVLIVNKWD 298 Query: 142 CV 143 V Sbjct: 299 AV 300 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 6/176 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKST VNR G + +IV + TR ++ + + +DT G +F+ Sbjct: 6 VAVVGRPNVGKSTFVNRLAGERDAIVHDEPGVTRDRTYRPAFWQDREFLVVDTGGLVFDD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + + ++ A VVD +++ + + S +++ +NK + Sbjct: 66 DSDFLPLIRQQAELALQEATAAIFVVDGQAGPTALDYEIAAWLRQLSLPVLVAVNKCES- 124 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 R + Q + A + + + +S+ G G ++L+ L + LP + A +I Sbjct: 125 ---RQMGQVQAAEFWSLGLGEPYPISSIHGSGTGELLDQLITYLPAGETLPEAPEI 177 >gi|7994696|sp|O51830|MNME_BUCMP RecName: Full=tRNA modification GTPase mnmE gi|2754806|gb|AAC04235.1| ThdF [Buchnera aphidicola (Myzus persicae)] Length = 453 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 10/162 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G NAGKS+L+N + +IVT TTR ++ +S +DT G+ + K Sbjct: 219 IVIAGPPNAGKSSLLNALSHSNRAIVTKIPGTTRDLLYENISINGISCQLIDTAGLRDTK 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + ++ I +W IK AD V V+D E K ++ ++ I+ + ++ ILNK D Sbjct: 279 NEIERIGIFRAWEVIKKADHVLFVIDKTTKQSEQKKICNEFIQNISVNNIQITFILNKND 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 V+ + E+ E L+FI +SA G G D + ++ Sbjct: 339 LVQDKFNTEKIE---SLLFIN----ISARTGQGIDKLRKHIV 373 >gi|85060406|ref|YP_456108.1| tRNA modification GTPase TrmE [Sodalis glossinidius str. 'morsitans'] gi|123518608|sp|Q2NQ72|MNME_SODGM RecName: Full=tRNA modification GTPase mnmE gi|84780926|dbj|BAE75703.1| thiophene and furan oxidation protein [Sodalis glossinidius str. 'morsitans'] Length = 454 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 19/126 (15%) Query: 5 EITFFNEHK------------DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGA 45 EI F +E K + V+ +R G V + G NAGKS+L+N G Sbjct: 180 EIDFLSEGKIEASLNDVIARLERVRTEARQGSLLREGMKVVIAGKPNAGKSSLLNALAGR 239 Query: 46 KVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV 105 + +IVT TTR ++R + + +DT G+ NA D ++ I +W I+ AD V Sbjct: 240 EAAIVTAIAGTTRDVLREHIHLDGMPLHIIDTAGLRNAGDEVERIGIERAWREIEQADHV 299 Query: 106 CLVVDS 111 L+VD Sbjct: 300 LLMVDG 305 >gi|323345523|ref|ZP_08085746.1| thiophene and furan oxidation protein ThdF [Prevotella oralis ATCC 33269] gi|323093637|gb|EFZ36215.1| thiophene and furan oxidation protein ThdF [Prevotella oralis ATCC 33269] Length = 453 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 15 FVQDNS-RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 F DN+ + G VA+VG TN GKSTL+NR + +IV+ TTR ++ + Sbjct: 211 FETDNALKKGVPVAIVGKTNVGKSTLLNRLLHEDKAIVSDIHGTTRDVIEDTTEIHDITF 270 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RS 130 F+DT GI + D L I ++ I A I+ ++D K ++ + EI K R Sbjct: 271 RFIDTAGIRHTDDKIELLGIERTYQKINEATIILWLID-----KQPTNEEISEIKKNIRG 325 Query: 131 SRLILILNKIDCVKP 145 +LI + NKID P Sbjct: 326 KKLITVWNKIDLENP 340 >gi|309807783|ref|ZP_07701715.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 01V1-a] gi|308168885|gb|EFO70971.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 01V1-a] Length = 386 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG A+VG N GKS+L+N + +IVT+ TTR + VS K + +DT G Sbjct: 222 RSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L+++S EL LL E+ + R I+ILNK Sbjct: 282 IRQTDDIVEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLL-ELTQDKKR-IVILNK 339 Query: 140 IDCV 143 D V Sbjct: 340 ADQV 343 >gi|260776629|ref|ZP_05885524.1| GTP-binding protein EngA [Vibrio coralliilyticus ATCC BAA-450] gi|260607852|gb|EEX34117.1| GTP-binding protein EngA [Vibrio coralliilyticus ATCC BAA-450] Length = 495 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 10/184 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ M S + I AD+V +VD L + I + L++I K S +L++NK+ Sbjct: 64 EEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDIAISNHLRKIEKPS---MLVVNKV 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + + A + +E + ++A G G +++ + + +I D Sbjct: 121 DGIDA----DAASADFWQLGVESMYQIAAAHGRGVGALIDRALNPFAEKMAEEARGEIED 176 Query: 201 LPMF 204 L F Sbjct: 177 LTDF 180 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ K Sbjct: 209 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRK 268 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL +++ +NK D Sbjct: 269 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWD 328 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 329 GLDMDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 365 >gi|224531730|ref|ZP_03672362.1| ribosome-associated GTPase EngA [Borrelia valaisiana VS116] gi|224511195|gb|EEF81601.1| ribosome-associated GTPase EngA [Borrelia valaisiana VS116] Length = 433 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 5/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR + K SI TR +V + +DT G + Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFSFKLIDTGGFTILR 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K++++ S+++ +++ LV+D + L + + +++++ K SS++IL+LNK+D Sbjct: 67 DEISKIVVQKVLSSLEKVNLILLVLDVNEILPED-YQIIEKLRKYSSKVILVLNKVDTKD 125 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L A + L F ++ F+VSA G + ++L Sbjct: 126 KEIL---AHEFHNLGF-KRYFLVSAVHCRGITKLRDFL 159 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 7/124 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V ++G N+GKSTL+N G ++SIV+ + TTR ++ + +DT GI Sbjct: 176 VGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKFTSNGKVFEIIDTAGIRRRA 235 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ + + I DIV L++D EL + +AK+ +I++ +K Sbjct: 236 RVNEIVEYYS--VNRALKVIDMVDIVFLLIDVKEELTSQDKKIAHYVAKKGKGIIIVFSK 293 Query: 140 IDCV 143 D V Sbjct: 294 WDLV 297 >gi|52627366|gb|AAU84697.1| tRNA modification GTPase TrmE [Prevotella intermedia] Length = 467 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TN GKSTL+NR + +IV++ TTR I+ +S F+DT GI Sbjct: 228 VAIIGKTNVGKSTLLNRLLRDNRAIVSNIHGTTRDIIEDTISINGVDFHFIDTAGIRKTT 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI-DCV 143 D +L I + +T++ A IV VVD+ + ++L + + LIL+ NK+ D Sbjct: 288 DYVEQLGIERTLATLEKAQIVLWVVDN-EPTESEKKEILAQCTDK--HLILVHNKVDDLT 344 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD--DVLNYLCSTLP 187 +P A ++ + +S G + + L Y + LP Sbjct: 345 EPTNQQNHAATSHDSTYTYHEIAISGKYNLGINQLEALIYKVADLP 390 >gi|66044500|ref|YP_234341.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae B728a] gi|81308464|sp|Q4ZX19|DER_PSEU2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|63255207|gb|AAY36303.1| Small GTP-binding protein domain:GTP-binding [Pseudomonas syringae pv. syringae B728a] Length = 490 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 316 WDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSA 368 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 >gi|261212137|ref|ZP_05926423.1| GTP-binding protein EngA [Vibrio sp. RC341] gi|260838745|gb|EEX65396.1| GTP-binding protein EngA [Vibrio sp. RC341] Length = 494 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 7/179 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L V + + + + IL++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD-QISDL 201 + AE + +++ + ++ G G +++ + P A + S Q+ DL Sbjct: 124 DAD--AASAEFWQ--LGMDQMYQIATAHGRGVGALIDRALN--PFAEQMESEQAQLEDL 176 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + E + V +DT G+ K Sbjct: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRK 267 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL +++ +NK D Sbjct: 268 RINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSLLGFALNSGRSIVIAVNKWD 327 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 328 GLSIDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 364 >gi|253988871|ref|YP_003040227.1| GTP-binding protein EngA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780321|emb|CAQ83482.1| gtp-binding protein enga (double era-like domain protein) [Photorhabdus asymbiotica] Length = 499 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 54/120 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 9 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGT 68 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L H + K + R L+ NK D + Sbjct: 69 EDGVETHMAAQSLMAIEEADIVLFMVDARAGLMPADHAIAKHLRSREKATFLVANKTDGI 128 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 215 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 274 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++ +NK D Sbjct: 275 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIAVNKWD 334 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + E+ + +L F++ + +SA G G ++ + Y C+T Sbjct: 335 GMSQEDKEQVKEMLDYRLGFVDFARVHFISALHGSGVGNLFDSILEAYDCAT 386 >gi|224538904|ref|ZP_03679443.1| hypothetical protein BACCELL_03800 [Bacteroides cellulosilyticus DSM 14838] gi|224519482|gb|EEF88587.1| hypothetical protein BACCELL_03800 [Bacteroides cellulosilyticus DSM 14838] Length = 466 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 4/176 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ + F+DT GI Sbjct: 225 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTTNIGGITFRFIDTAGIRETN 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILNKIDC 142 D+ L I ++ ++ A+IV ++D+ + ++ L +I R R LIL+ NK D Sbjct: 285 DTIESLGIERTFQKLEQAEIVLWMIDA-TDATSQMNQLSGQILPRLERKHLILVFNKADL 343 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + E A+ ++ + +SA K D + L + L P + D I Sbjct: 344 LGTAHSGEVLSAASSIIPDAECIFISAKKRQNTDVLQKKLIAAANL-PTITQNDVI 398 >gi|209519685|ref|ZP_03268474.1| tRNA modification GTPase TrmE [Burkholderia sp. H160] gi|209499902|gb|EDZ99968.1| tRNA modification GTPase TrmE [Burkholderia sp. H160] Length = 464 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++T E V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLTRIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ + Sbjct: 261 TRDKVAQTIQIEGIPLHVIDTAGLRETEDEVEKIGIERTWGEIERADVVLHLLDARAGMT 320 Query: 117 VNIHDLLKEIAKRSSR---LILILNKID 141 + + IA R R ++ +LNK D Sbjct: 321 ADD----ETIAGRFPRGVPVVRVLNKTD 344 >gi|115668685|ref|XP_786056.2| PREDICTED: similar to Era (G-protein)-like 1 [Strongylocentrotus purpuratus] gi|115964572|ref|XP_001195826.1| PREDICTED: similar to Era (G-protein)-like 1 [Strongylocentrotus purpuratus] Length = 562 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 ++SR V +VG N+GKSTL+N +G ++ V+ KV TT S +++ K +Q+V LDT Sbjct: 70 EDSRISRVTIVGTPNSGKSTLINSLLGRRICAVSQKVHTTMSKALAVITHKNTQVVLLDT 129 Query: 78 PGIFN-AKDSYHKL 90 PG+ + + HKL Sbjct: 130 PGLISYTQGRRHKL 143 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 4/132 (3%) Query: 165 FMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIP 224 +MVSA G G +D+ +L + W Y D +++L + REKL L +E+P Sbjct: 435 YMVSALHGDGVNDLKEFLVTNAKPGDWEYHEDVVTNLTPEEIVRDAIREKLLETLPQEVP 494 Query: 225 YSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQ 284 Y+ TE W ++G + I Q++ + S +++ K + I +A +++ + Sbjct: 495 YNISQSTELWRTGENGELHIVQILICHKKSHVRMLEKK----LAWIGRQATQDLMDAFHC 550 Query: 285 PVHLILFVKVQK 296 V L L V+ +K Sbjct: 551 DVKLSLHVRFKK 562 >gi|37222112|gb|AAP49306.1| Uvs063 [uncultured bacterium] Length = 435 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 8/184 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + VA+VG N GKSTL NR + + +IV TR G + +DT G Sbjct: 2 NNIVAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYV 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + IR I AD++ VVD + + K + K + ++L +NK+ Sbjct: 62 RGSDDVFEGEIRKQVELAIDEADVIIFVVDVEEGITPMDETVAKLLRKVTKPVLLAVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+ + E N + + F ++ G G D+L+ L P P V + + D Sbjct: 122 DNAMREK--DAIEFYN--LGLGDYFTFASISGSGTGDLLDALIDAFPEKPEVEAKE---D 174 Query: 201 LPMF 204 LP F Sbjct: 175 LPRF 178 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSFINALIGQDRYIVTDIAGTTRDAIDTKFDRFGFEFNLVDTAGIRRKAK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I+HADI LV+D+ R + + K +++++NK D Sbjct: 239 VKEDLEFYSVMRSVRAIEHADICILVIDATRGFEGQDQSIFWLAEKNRKGVVILVNKWDL 298 Query: 143 VKPERL 148 V+ + + Sbjct: 299 VEKDTM 304 >gi|53717720|ref|YP_106706.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei K96243] gi|53724896|ref|YP_104852.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344] gi|126440482|ref|YP_001057151.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668] gi|126454342|ref|YP_001064396.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a] gi|134281363|ref|ZP_01768071.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305] gi|167717471|ref|ZP_02400707.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei DM98] gi|167736506|ref|ZP_02409280.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 14] gi|167813583|ref|ZP_02445263.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 91] gi|167822125|ref|ZP_02453596.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 9] gi|167843730|ref|ZP_02469238.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei B7210] gi|167892208|ref|ZP_02479610.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 7894] gi|167900719|ref|ZP_02487924.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei NCTC 13177] gi|167908938|ref|ZP_02496029.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 112] gi|167916978|ref|ZP_02504069.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei BCC215] gi|217423934|ref|ZP_03455434.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576] gi|226193161|ref|ZP_03788771.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan 9] gi|237810287|ref|YP_002894738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346] gi|242317582|ref|ZP_04816598.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b] gi|254184155|ref|ZP_04890746.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655] gi|254194641|ref|ZP_04901072.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13] gi|254298579|ref|ZP_04966030.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e] gi|81380766|sp|Q63YV9|MNME_BURPS RecName: Full=tRNA modification GTPase mnmE gi|81603688|sp|Q62EM6|MNME_BURMA RecName: Full=tRNA modification GTPase mnmE gi|205829148|sp|A3NPX5|MNME_BURP0 RecName: Full=tRNA modification GTPase mnmE gi|205829149|sp|A3N480|MNME_BURP6 RecName: Full=tRNA modification GTPase mnmE gi|205829160|sp|A1V7D3|MNME_BURMS RecName: Full=tRNA modification GTPase mnmE gi|205829167|sp|A3MS17|MNME_BURM7 RecName: Full=tRNA modification GTPase mnmE gi|205829168|sp|A2S8D8|MNME_BURM9 RecName: Full=tRNA modification GTPase mnmE gi|52208134|emb|CAH34064.1| putative tRNA modification GTPase [Burkholderia pseudomallei K96243] gi|52428319|gb|AAU48912.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344] gi|126219975|gb|ABN83481.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668] gi|126227984|gb|ABN91524.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a] gi|134247030|gb|EBA47116.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305] gi|157808553|gb|EDO85723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e] gi|169651391|gb|EDS84084.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13] gi|184214687|gb|EDU11730.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655] gi|217392997|gb|EEC33019.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576] gi|225934761|gb|EEH30738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan 9] gi|237505603|gb|ACQ97921.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346] gi|242140821|gb|EES27223.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b] Length = 467 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 20/206 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ L Sbjct: 261 TRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDARSGLG 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKG 172 + IA R ++ +LNK D P + A + E +SA +G Sbjct: 321 PGD----EAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGAARADVCE--VRLSAKRG 374 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 375 DGIDLLRGEL---LRIAGWQAGAESV 397 >gi|330874711|gb|EGH08860.1| GTP-binding protein Der [Pseudomonas syringae pv. glycinea str. race 4] Length = 440 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 316 WDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSA 368 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 >gi|329565809|gb|AEB92241.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 185 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 244 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ ++ +LNK Sbjct: 245 IRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNK 302 Query: 140 IDCVKPERLLEQAEIAN 156 ID K +++ E+ N Sbjct: 303 IDLPKK---IDEKELKN 316 >gi|301154697|emb|CBW14160.1| GTPase [Haemophilus parainfluenzae T3T1] Length = 452 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 10/139 (7%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ ++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 199 DLVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 258 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ A D ++ I +W+ I+ AD + L++DS NI + E Sbjct: 259 IDGMPLHIIDTAGLREATDEVERIGISRAWTEIEQADRIILMLDSSDPDSQNIEKVRSEF 318 Query: 127 AKR---SSRLILILNKIDC 142 + + + ++ NK+D Sbjct: 319 LSKLPNNMPVTIVRNKVDL 337 >gi|167753390|ref|ZP_02425517.1| hypothetical protein ALIPUT_01664 [Alistipes putredinis DSM 17216] gi|167658015|gb|EDS02145.1| hypothetical protein ALIPUT_01664 [Alistipes putredinis DSM 17216] Length = 433 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL NR VG + +IV TTR G + +DT G N+ Sbjct: 4 VAIVGRPNVGKSTLFNRLVGQRKAIVDATAGTTRDRHYGKTDWNGREFSVIDTGGYSVNS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNKIDC 142 D + + R I+ AD++ +V+ + + ++ ++ +I +R+S +++L+ NK+D Sbjct: 64 DDIFEDDIRRQVMLAIEEADVILFLVEVNTGI-TDLDQMMADILRRTSKKVLLVCNKVDN 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + E + + + + + +S+ G G D+++ + LP Sbjct: 123 Y--DLIYSSHEFYS--LGLGEPYCISSMSGSGTGDLMDEIVRDLP 163 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + +VG N GKS+L N +G + +IVT TTR + ++ +DT G+ Sbjct: 176 ITIVGRPNVGKSSLTNALLGEERNIVTPIAGTTRDAIHSRYNKYGLDFYLVDTAGMRKKG 235 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILN 138 L + S I+ +D+ L++D+ + L+ +NIH+L I + ++++N Sbjct: 236 KVTEDLEFYSVMRSIRAIEESDVCILMLDAQQGLESQDLNIHNL---IVRNRKGCVIVVN 292 Query: 139 KIDCVK 144 K D V+ Sbjct: 293 KWDLVE 298 >gi|170734511|ref|YP_001766458.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3] gi|205829124|sp|B1K0Y2|MNME_BURCC RecName: Full=tRNA modification GTPase mnmE gi|169817753|gb|ACA92336.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3] Length = 464 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 14/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D ++ I +WS I+ AD+V ++DS + + + IA R ++ +LNK Sbjct: 288 EDEVERIGIARTWSEIERADVVLHLLDSRTGMTPDD----ETIAARFPAGVPVVRVLNKT 343 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D +E L + +SA +G G D + L L +A W A+ + Sbjct: 344 DLTGVPACVEHPAAEGDLTEVH----LSAKRGDGIDMLRAEL---LRIAGWQAGAEGV 394 >gi|90194082|gb|ABD92602.1| ThdF [Mannheimia haemolytica] Length = 436 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +A D ++ I+ +W I AD V L++DS Sbjct: 263 LRDASDEVERIGIQRAWEEIAQADHVLLMIDS 294 >gi|91790726|ref|YP_551678.1| tRNA modification GTPase TrmE [Polaromonas sp. JS666] gi|123164107|sp|Q121L2|MNME_POLSJ RecName: Full=tRNA modification GTPase mnmE gi|91699951|gb|ABE46780.1| tRNA modification GTPase trmE [Polaromonas sp. JS666] Length = 478 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 24/164 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V ++ + + +DT G+ A Sbjct: 234 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVSELIQIEGVPLHVVDTAGLREAL 293 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAK-------------RS 130 D K+ + +W+ I+ AD V + D S R+ + D + IA + Sbjct: 294 DEVEKIGVERAWAEIESADAVLFLHDLSRRDAALPAQDTINYIAADDRIARTLANKLPEN 353 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + +I + NK D P L + ++ ++SA G G Sbjct: 354 TAIIDVWNKSDLTSPAGLQQ----------VQGGVLISAKTGAG 387 >gi|76811890|ref|YP_331723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b] gi|254186626|ref|ZP_04893143.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur 52237] gi|254261025|ref|ZP_04952079.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a] gi|123600728|sp|Q3JXI0|MNME_BURP1 RecName: Full=tRNA modification GTPase mnmE gi|76581343|gb|ABA50818.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b] gi|157934311|gb|EDO89981.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur 52237] gi|254219714|gb|EET09098.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a] Length = 467 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 20/206 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ L Sbjct: 261 TRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDARSGLG 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKG 172 + IA R ++ +LNK D P + A + E +SA +G Sbjct: 321 PGD----EAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGAARADVCE--VRLSAKRG 374 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 375 DGIDLLRGEL---LRIAGWQAGAESV 397 >gi|260773381|ref|ZP_05882297.1| GTP-binding protein EngA [Vibrio metschnikovii CIP 69.14] gi|260612520|gb|EEX37723.1| GTP-binding protein EngA [Vibrio metschnikovii CIP 69.14] Length = 496 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 11/169 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E++ + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGENEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S + I AD+V +VD L + + + + IL++NK+D + Sbjct: 64 EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTSADEAIAQHLRRIEKNAILVVNKVDGI 123 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGC----DDVLNYLCSTL 186 + A A +L + + ++A G G D LN L + Sbjct: 124 DAD-----AACAEFWQLGMGSQMYQIAAAHGRGVAVLIDRALNPLAEQM 167 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + + V +DT G+ K Sbjct: 210 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDDREYVLIDTAGVRRRK 269 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL +++ +NK D Sbjct: 270 SINETVEKFSVVKTLKAIEDANVVLLVIDARENISDQDLSLLGFTLNAGRSVVIAINKWD 329 Query: 142 CVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + ER+ + E+ +L F++ + +SA G G Sbjct: 330 GLSNDIKERV--KKELDRRLGFVDFARIHFISALHGTGV 366 >gi|298241878|ref|ZP_06965685.1| small GTP-binding protein [Ktedonobacter racemifer DSM 44963] gi|297554932|gb|EFH88796.1| small GTP-binding protein [Ktedonobacter racemifer DSM 44963] Length = 409 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 16/142 (11%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 M I + +D +Q S VA+VG N GKSTL N+ G +S V+ +V TTR++VR Sbjct: 59 MKAINWNQAQQDVIQ--GLSNTVAIVGMPNTGKSTLFNQMKGQTLSPVSAQVGTTRTLVR 116 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 +DTPG H + + S ++ A +V ++D+ R L+ +L Sbjct: 117 ----TDFGPFTLIDTPG--------H--LPDVMESGMEQASVVVFLLDAARGLQAEDREL 162 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 I K I+ +NK+D ++ Sbjct: 163 YNSIRKLEKPTIIAVNKVDTLR 184 >gi|71735846|ref|YP_273582.1| GTP-binding protein EngA [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487194|ref|ZP_05641235.1| GTP-binding protein EngA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|123637657|sp|Q48LZ0|DER_PSE14 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71556399|gb|AAZ35610.1| GTP-binding protein engA [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322917|gb|EFW79007.1| GTP-binding protein EngA [Pseudomonas syringae pv. glycinea str. B076] gi|320329960|gb|EFW85948.1| GTP-binding protein EngA [Pseudomonas syringae pv. glycinea str. race 4] gi|330985018|gb|EGH83121.1| GTP-binding protein Der [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009189|gb|EGH89245.1| GTP-binding protein Der [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 490 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 316 WDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSA 368 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 >gi|291457893|ref|ZP_06597283.1| tRNA modification GTPase TrmE [Oribacterium sp. oral taxon 078 str. F0262] gi|291419437|gb|EFE93156.1| tRNA modification GTPase TrmE [Oribacterium sp. oral taxon 078 str. F0262] Length = 459 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 65/115 (56%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N +G + +IVT TTR + +S K+ + +DT GI +D Sbjct: 227 IVGKPNAGKSSLLNALLGEERAIVTEIEGTTRDTLEEELSLKDLNLRAIDTAGIRETEDP 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + + + AD++ VVD+ R L + ++L+ + + + +L+LNK D Sbjct: 287 VERIGVERAKKAAEDADLIIYVVDASRPLDSSDEEILRFLPGKKA--LLLLNKSD 339 >gi|194291282|ref|YP_002007189.1| tRNA modification gtpase trme [Cupriavidus taiwanensis LMG 19424] gi|193225117|emb|CAQ71128.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Cupriavidus taiwanensis LMG 19424] Length = 475 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 8/126 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 V L G N GKS+L+N GA+++IVT TTR VR + + +DT G+ Sbjct: 222 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREE 281 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSH-------RELKVNIHDLLKEIAKRSSRLIL 135 A D ++ I +W I+ ADIV +VD+ E+ I D L + ++ Sbjct: 282 AADEVERIGIERTWDAIRRADIVLHLVDATDYLRHGLSEIDDAIDDKLSGQLPPGAPIVR 341 Query: 136 ILNKID 141 I+NKID Sbjct: 342 IVNKID 347 >gi|90194090|gb|ABD92606.1| ThdF [Actinobacillus genomosp. 2] gi|90194096|gb|ABD92609.1| ThdF [Actinobacillus arthritidis] Length = 436 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D ++ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 263 LREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|57639947|ref|YP_182425.1| GTP-binding protein [Thermococcus kodakarensis KOD1] gi|57158271|dbj|BAD84201.1| GTP-binding protein [Thermococcus kodakarensis KOD1] Length = 185 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 24/154 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE------------KESQI 72 VA++GA N GKSTL+N +G KVS V + TT+ ++R + + Sbjct: 4 VAIIGAENVGKSTLMNALIGGKVSEVENLPGTTKGVIRRRFGKLKIPKGMKNPYGGADEF 63 Query: 73 VFLDTPGIFNAKDSYHKLMI-----RLSWSTIKHADIVCLVVDS----HRELKVNIHDLL 123 V +DT G+F+ + ++ R + I ADI+ +VD+ HR ++ +H +L Sbjct: 64 VLIDTAGLFDPERELRGKVLSEEKFREIINEITSADIIIHMVDATVGLHRGME-KLHHML 122 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANK 157 K + +I+++NKID V ER+ E EI K Sbjct: 123 K--FRYEKPIIVVINKIDLVPRERVEELREIIKK 154 >gi|329565807|gb|AEB92240.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565811|gb|AEB92242.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 185 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 244 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ ++ +LNK Sbjct: 245 IRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNK 302 Query: 140 IDCVKPERLLEQAEIAN 156 ID K +++ E+ N Sbjct: 303 IDLPKK---IDEKELKN 316 >gi|329565797|gb|AEB92235.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 185 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 244 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ ++ +LNK Sbjct: 245 IRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNK 302 Query: 140 IDCVKPERLLEQAEIAN 156 ID K +++ E+ N Sbjct: 303 IDLPKK---IDEKELKN 316 >gi|283786127|ref|YP_003365992.1| GTP-binding protein [Citrobacter rodentium ICC168] gi|282949581|emb|CBG89199.1| GTP-binding protein [Citrobacter rodentium ICC168] Length = 490 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + + + R L+ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIARHLRSREKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P +QA + + + + ++A+ G G +L ++ L PW+ Sbjct: 124 DP----DQAVVDFYSLGLGEIHPIAASHGRGVLSLLEHV-----LLPWM 163 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 205 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 264 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 265 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 324 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 325 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 365 >gi|90194124|gb|ABD92623.1| ThdF [Actinobacillus porcinus] Length = 436 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 10/139 (7%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 190 DNVRREARQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 249 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W+ I+ AD V L++DS ++ + E Sbjct: 250 IDGMPLHIIDTAGLRDATDEVERIGITRAWNEIEQADRVLLMLDSSDPASNDLEKVRSEF 309 Query: 126 IAKRSSRL--ILILNKIDC 142 +AK + L +I NK D Sbjct: 310 LAKLPANLPVTIIRNKTDL 328 >gi|81429490|ref|YP_396491.1| tRNA modification GTPase TrmE [Lactobacillus sakei subsp. sakei 23K] gi|123563597|sp|Q38UE9|MNME_LACSS RecName: Full=tRNA modification GTPase mnmE gi|78611133|emb|CAI56186.1| tRNA modification GTPase trmE [Lactobacillus sakei subsp. sakei 23K] Length = 462 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + I AD++ LV++ L + +L+ A + I+ILNK Sbjct: 282 IHDTEDKVEKIGVERSRAAITKADLILLVLNQSEPLTIEDRELIT--ATTDKKRIIILNK 339 Query: 140 IDCVKPERL 148 D P +L Sbjct: 340 TDL--PNQL 346 >gi|319760649|ref|YP_004124587.1| GTP-binding protein engA [Candidatus Blochmannia vafer str. BVAF] gi|318039363|gb|ADV33913.1| GTP-binding protein engA [Candidatus Blochmannia vafer str. BVAF] Length = 478 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 6/160 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKSTL NR ++V TR G + K + + +DT G+ + Sbjct: 9 VVLVGQKNVGKSTLFNRLTQNYRALVADYFGVTRDRQYGYIQHKNDKCIIVDTGGVDESS 68 Query: 85 DSYHKLMIRLSWS-TIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNKI 140 DS+ + I + I+ ADIV VV+ + NI L+++ K + + +++NKI Sbjct: 69 DSFLQNAINYQTNLAIREADIVLFVVNGRAYESSIDYNIIGNLRKLGK--NNIFVVINKI 126 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D + + + + + I++ ++SA G+G D +L+ Sbjct: 127 DNFRFKNKNLETKYSYYSFGIKEVIVISAMHGYGIDILLD 166 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 13/164 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N+GKST +N V I + TTR V + + + +DT GI Sbjct: 206 LAVVGRPNSGKSTFINYVVQESRVITSSIPGTTRDSVYIPIICYNQKYMLIDTAGIRRGN 265 Query: 85 DSY-----HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + Y ++ + ++ IK A ++ L++D + + LL I + L++ LNK Sbjct: 266 NKYIDNLPERISVLKTFQVIKDAHVILLIIDINEGIVDQDLSLLNFIIRHGRSLVIALNK 325 Query: 140 IDCVKP----ERLLEQAEIANKLVFIE----KTFMVSATKGHGC 175 D P + + + KL F+ K +S+ G+G Sbjct: 326 WDNFSPLIKNSKSIILQSLTRKLNFLGFSTVKMHFISSLYGYGV 369 >gi|307265442|ref|ZP_07546998.1| tRNA modification GTPase TrmE [Thermoanaerobacter wiegelii Rt8.B1] gi|306919556|gb|EFN49774.1| tRNA modification GTPase TrmE [Thermoanaerobacter wiegelii Rt8.B1] Length = 462 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR I+ V+ K I +DT G Sbjct: 222 REGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ REL +++ + ++ ++ +LNK Sbjct: 282 IRDTDELVEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNK 339 Query: 140 IDCVK 144 ID K Sbjct: 340 IDLPK 344 >gi|83747145|ref|ZP_00944188.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Ralstonia solanacearum UW551] gi|83726120|gb|EAP73255.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Ralstonia solanacearum UW551] Length = 491 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 223 GQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 282 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V+ + + + +DT G+ + +D ++ I +W+ I AD+V ++D+ Sbjct: 283 TRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDA---AD 339 Query: 117 VNIHDLLKEIAKRSSRL----------ILILNKID---CVKPERLLEQ 151 H L E A +R+ + ++NKID P R+ Q Sbjct: 340 YRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAATPARVDAQ 387 >gi|190171190|gb|ACE63665.1| ThdF [Enterobacter cancerogenus] Length = 439 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D E I++ V +SA G G + + N+L Sbjct: 313 IARLPAKLPITVVRNKADVTG-----ETLGISD--VNGHSLIRLSARTGEGVEALRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|148984971|ref|ZP_01818214.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71] gi|182683965|ref|YP_001835712.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14] gi|147922669|gb|EDK73786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71] gi|182629299|gb|ACB90247.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14] Length = 479 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 243 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 302 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 303 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 360 Query: 140 IDCVKPE 146 D PE Sbjct: 361 TDL--PE 365 >gi|47217399|emb|CAG00759.1| unnamed protein product [Tetraodon nigroviridis] Length = 470 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 31/233 (13%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V + GATNAGKS+L+N +IV+ TTR +V + ++ DT G Sbjct: 214 RSGVQVVIAGATNAGKSSLLNTLCQRPAAIVSPIAGTTRDVVETPLDIGGFPVLLSDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRE-----LKVNIHDL--LKEIA 127 + ++ D + +R + ++ AD+ +VVD SH+ LK ++ + L+E Sbjct: 274 LRDSLDLVEREGVRRARERLEQADLTLVVVDCALLPSHQPEAAGFLKRHLRSVLSLQEHP 333 Query: 128 KRSSRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +R R++L+LNK D + PER E+A + + ++S G G D L L S++ Sbjct: 334 ER-GRVLLVLNKTDLLPHPERQNLARELA-RASGLPPVCLISCHTGEGLQDFLAALHSSV 391 Query: 187 PLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKD 239 AD ++ P +T+ + HL + C +++ +D Sbjct: 392 ----RNLCADPLAGAP------SLTQARHRAHLQQ-----CCAALAQYQSYRD 429 >gi|37525336|ref|NP_928680.1| GTP-binding protein EngA [Photorhabdus luminescens subsp. laumondii TTO1] gi|41017002|sp|Q7N702|DER_PHOLL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|36784763|emb|CAE13673.1| GTP-binding protein EngA [Photorhabdus luminescens subsp. laumondii TTO1] Length = 493 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 54/120 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L H + K + R L+ NK D V Sbjct: 64 EDGVETHMAAQSLLAIEEADIVLFMVDARAGLMPADHAIAKHLRGREKATFLVANKTDGV 123 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + + +DT G+ Sbjct: 209 LAIVGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYILIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++ +NK D Sbjct: 269 KITETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIAVNKWD 328 Query: 142 CVK---PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN-----YLCST 185 + ER+ E + V + +SA G G ++ + Y C+T Sbjct: 329 GMSQEDKERVKEMLDYRLGFVDFARVHFISALHGSGVGNLFDSILEAYDCAT 380 >gi|88799909|ref|ZP_01115481.1| predicted GTPase [Reinekea sp. MED297] gi|88777340|gb|EAR08543.1| predicted GTPase [Reinekea sp. MED297] Length = 458 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 57/123 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NRF + ++V TR G E + +DT G+ Sbjct: 4 VIALVGRPNVGKSTLFNRFTRTRDALVADWSGLTRDRKYGDGKLGERPFIVIDTGGVSGF 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M R S++ I AD V +VD + L + + K + L++NK D Sbjct: 64 EEGLDEAMARQSFAAIDEADAVLFLVDGQSGITSADSFLAEHLRKTQKSVTLVVNKTDGR 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 9/142 (6%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGA-KVSIVTHKVQTTRSIVRGIVSEKE 69 E D ++D+S +A++G N GKSTLVNR +G +V + H T SI I E+ Sbjct: 167 EQIDPMEDDSIR--LAIIGRPNVGKSTLVNRMLGEDRVVVYDHPGTTMDSIY--IPYERH 222 Query: 70 SQ-IVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 + +DT G+ N ++ K I + I+ A++V LV+D+ L +L Sbjct: 223 GKAYTLIDTAGVRRRKNITEAVEKFSIVKTLQAIQDANVVVLVIDAQDGLVDQDMHMLGF 282 Query: 126 IAKRSSRLILILNKIDCVKPER 147 + L++ +NK D + E+ Sbjct: 283 ALESGRALVIAINKWDGLSEEK 304 >gi|283768664|ref|ZP_06341576.1| tRNA modification GTPase TrmE [Bulleidia extructa W1219] gi|283105056|gb|EFC06428.1| tRNA modification GTPase TrmE [Bulleidia extructa W1219] Length = 441 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N + +IVT TTR IV G + + +DT GI ++ D Sbjct: 222 IVGRPNVGKSSLLNALLEEDKAIVTDIAGTTRDIVEGNIRIGSFSLHLIDTAGIRDSNDR 281 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ I S I+ A ++ LV+D +EL + +LL++ ++ I+I NK D Sbjct: 282 IEQMGIEKSKKMIEKAQLILLVMDGSQELTIEDQELLEQTKDKTR--IIIYNKKD 334 >gi|239993743|ref|ZP_04714267.1| tRNA modification GTPase [Alteromonas macleodii ATCC 27126] Length = 367 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 14/169 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR +++ + + +DT G+ + Sbjct: 128 VVIAGRPNAGKSSLLNALAGRDSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAGLRESP 187 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI---LILNKID 141 D ++ I +W I AD V VVDS ++ +++ E R + I ++ NK D Sbjct: 188 DKVEQIGIERAWQAINEADHVLFVVDSTATAVIDPYEIWPEFMARLPQGIPVTVVRNKAD 247 Query: 142 CVKPERLLEQAEIANKLVFIEK----TFMVSATKGHGCDDVLNYLCSTL 186 L +I V E+ +SA +G G D + +L T+ Sbjct: 248 -------LSTLDIGQSTVATEQGDISVINLSAKEGSGVDTLKAHLAKTM 289 >gi|261856983|ref|YP_003264266.1| tRNA modification GTPase TrmE [Halothiobacillus neapolitanus c2] gi|261837452|gb|ACX97219.1| tRNA modification GTPase TrmE [Halothiobacillus neapolitanus c2] Length = 448 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKS+L+N+ G +IVT TTR ++R + + +DT G+ + Sbjct: 220 VAIVGQPNAGKSSLLNQLAGDDRAIVTDIPGTTRDVLRAEIQIDGLPVHIIDTAGLRESD 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + IR +W ++ AD V + D HR + + ++ + I + NKID Sbjct: 280 EPIEREGIRRAWREVEQADAVLFLQDDHRNNPDEDEKIRAMLPRKHT--IWVFNKID 334 >gi|170694075|ref|ZP_02885231.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M] gi|170141147|gb|EDT09319.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M] Length = 464 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 7/123 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D K+ I +WS I+ AD+V ++D+ + + IAKR ++ +LNK Sbjct: 288 EDEVEKIGIARTWSEIERADVVLHLLDARTGMTAED----ETIAKRFPSGVPVVRVLNKT 343 Query: 141 DCV 143 D V Sbjct: 344 DLV 346 >gi|116513181|ref|YP_812088.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris SK11] gi|123025076|sp|Q02VP7|MNME_LACLS RecName: Full=tRNA modification GTPase mnmE gi|116108835|gb|ABJ73975.1| tRNA modification GTPase trmE [Lactococcus lactis subsp. cremoris SK11] Length = 455 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR ++ + + +DT G Sbjct: 220 REGLKTAIIGRPNVGKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D + + S + AD+V LV+D+ EL +LL E++K ++R++L LNK Sbjct: 280 IRETDDLVEAIGVERSKKALAEADLVLLVLDASLELTDKDLELL-ELSKNANRIVL-LNK 337 Query: 140 IDCVKPERL 148 D PE+L Sbjct: 338 TDL--PEKL 344 >gi|186684424|ref|YP_001867620.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102] gi|186466876|gb|ACC82677.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102] Length = 464 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 22/165 (13%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------ 73 R+G VA+VG N GKS+L+N + + +IVT TTR +V ESQ+V Sbjct: 223 RTGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVV-------ESQLVVGGIPV 275 Query: 74 -FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 LDT GI D K+ + S AD+V L +D+ ++ +++ R Sbjct: 276 QVLDTAGIRETTDQVEKIGVERSRRAANAADLVLLTIDASAGWTEGDREIYEQVQHRP-- 333 Query: 133 LILILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 LIL++NKID V+ +R Q++I N +A + G D Sbjct: 334 LILVINKIDLVEERQRKTLQSQIPNP----NSKIATAAAQNQGID 374 >gi|289677942|ref|ZP_06498832.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae FF5] Length = 391 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 316 WDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSA 368 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 >gi|221632863|ref|YP_002522085.1| putative GTPase [Thermomicrobium roseum DSM 5159] gi|221155423|gb|ACM04550.1| putative GTPase of unknown function subfamily [Thermomicrobium roseum DSM 5159] Length = 424 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL-DTPGIFN 82 +ALVG TNAGKSTL+N GA V + K+ T + +SQ+ L DT G + Sbjct: 195 VIALVGYTNAGKSTLLNALTGADV-LAADKLFATLDPTTRRLRLSDSQVALLTDTVGFIH 253 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLILILN 138 + R + I A ++ VVD +H E + +L+E+ I +LN Sbjct: 254 KLPTTLVAAFRATLEEILDAHLLLHVVDITHPKAAEQAAAVRQVLRELGADRYPTITVLN 313 Query: 139 KID----CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID + P+RL + +I VF VSA G+G + + + + TL Sbjct: 314 KIDRLEPTIDPDRLARELDIPTNAVF------VSAATGYGLETLRDRIARTL 359 >gi|160931619|ref|ZP_02079014.1| hypothetical protein CLOLEP_00451 [Clostridium leptum DSM 753] gi|156869490|gb|EDO62862.1| hypothetical protein CLOLEP_00451 [Clostridium leptum DSM 753] Length = 440 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 4/157 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 VA+VG N GKSTL N+ +G +V+IV TR + G + ++ +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLIGQRVAIVNDTPGVTRDRIYGECEWRSRKVTLVDTGGIEPYS 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R + I AD++ LV D + ++ + K ++L +NK D + Sbjct: 66 DDVILSQMRRQAELAIDTADVIVLVTDVKTGVVATDSEVAAMLLKSGRPVVLCVNKCDGI 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 E E E N + + VS+ GHG D+L+ Sbjct: 126 G-EPPAEFYEFYN--LGLGDPIQVSSVHGHGTGDLLD 159 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 13/152 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G NAGKS+L+N+ G IV+ TTR + + + +DT GI Sbjct: 180 VAVIGKPNAGKSSLINQIAGEDRCIVSDIAGTTRDAIDTQIENDYGRFTLIDTAGIRRKS 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 D K + + I +D+ +++D+ E + L E K ++ +N Sbjct: 240 RVDDEIEKYSVIRAQMAIDRSDVCVIMIDATEGFTEQDSKVAGLAHEAGK---GCVIAVN 296 Query: 139 KIDCV-KPERLLEQAEIANKLVFIEKTFMVSA 169 K D V K R +++ K + ++ +FM A Sbjct: 297 KWDAVEKDGRTMQEYR---KKLEVDFSFMAYA 325 >gi|15458528|gb|AAK99724.1| Thiophene and furan oxidation protein [Streptococcus pneumoniae R6] Length = 479 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 243 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 302 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 303 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 360 Query: 140 IDCVKPE 146 D PE Sbjct: 361 TDL--PE 365 >gi|239944771|ref|ZP_04696708.1| putative ATP/GTP-binding protein [Streptomyces roseosporus NRRL 15998] gi|239991235|ref|ZP_04711899.1| putative ATP/GTP-binding protein [Streptomyces roseosporus NRRL 11379] gi|291448234|ref|ZP_06587624.1| ATP/GTP-binding protein [Streptomyces roseosporus NRRL 15998] gi|291351181|gb|EFE78085.1| ATP/GTP-binding protein [Streptomyces roseosporus NRRL 15998] Length = 506 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 24/209 (11%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + ++ VA+ G TNAGKS+L+NR GA V + T V Sbjct: 264 EIAEMKTGREIKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 323 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 324 RRAETPSGRIYTLADTVGFVRHLPHHLVEAFRSTMEEVGESDLILHVVDGSHPVPEEQLA 383 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + ++++++ + R I+++NK D P +RLL + A VSA G G Sbjct: 384 AVREVIRDVGAVNVREIVVINKADAADPLVLQRLLRNEKYA---------ITVSARTGEG 434 Query: 175 CDDVLNYLCSTLP--------LAPWVYSA 195 D++L + + LP L P++ A Sbjct: 435 IDELLALIDAELPRPSVEIEVLVPYIQGA 463 >gi|207727483|ref|YP_002255877.1| trna modification gtpase trme protein [Ralstonia solanacearum MolK2] gi|206590720|emb|CAQ56332.1| trna modification gtpase trme protein [Ralstonia solanacearum MolK2] Length = 491 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 223 GQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 282 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V+ + + + +DT G+ + +D ++ I +W+ I AD+V ++D+ Sbjct: 283 TRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDA---AD 339 Query: 117 VNIHDLLKEIAKRSSRL----------ILILNKID---CVKPERLLEQ 151 H L E A +R+ + ++NKID P R+ Q Sbjct: 340 YRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAATPARVDAQ 387 >gi|124028408|ref|YP_001013728.1| GTPase [Hyperthermus butylicus DSM 5456] gi|123979102|gb|ABM81383.1| predicted GTPase [Hyperthermus butylicus DSM 5456] Length = 375 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 21/193 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G +AGKSTLV R A+ I ++ TT+SI+ G + +DTPGI Sbjct: 182 VVVVAGIPSAGKSTLVRRISTAEPEIASYPF-TTKSIIVGKARHQGMVFYVVDTPGILER 240 Query: 84 KDSYHKLMIRLSWSTIKH-ADIVCLVVDSHRELKV----NIHDLLKEIAK-----RSSRL 133 H + R + + +K DIV +++D E KV N LL+ I + R + L Sbjct: 241 PLELHNEIERKALAALKTLPDIVLVLLDPSPE-KVQSLENQERLLRSIYEGIVKPREAGL 299 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVF--------IEKTFMVSATKGHGCDDVLNYLCST 185 I+ +NK+D E + + E+A+ L+ + K +SA G G ++L+ + Sbjct: 300 IIAVNKVDASAREEVEKAIEMASSLLRDVNQSVRCVNKPIPISALHGQGVGELLDVVIEC 359 Query: 186 LPL-APWVYSADQ 197 L PW++ + Sbjct: 360 LKRKTPWLFPGAE 372 >gi|319945013|ref|ZP_08019275.1| tRNA modification GTPase TrmE [Lautropia mirabilis ATCC 51599] gi|319741583|gb|EFV94008.1| tRNA modification GTPase TrmE [Lautropia mirabilis ATCC 51599] Length = 518 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 7/96 (7%) Query: 18 DNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D ++SG V L GA N GKS+L+N GA+V+IVT TTR V +S + Sbjct: 213 DTAQSGARLRQGLNVVLTGAPNVGKSSLLNALAGAEVAIVTPIAGTTRDRVIEQISIEGV 272 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVC 106 I +DT G+ + D K+ I+ +W+ I+ AD+V Sbjct: 273 PINLIDTAGLRDTDDPVEKIGIQRTWAEIEKADVVV 308 >gi|307704774|ref|ZP_07641670.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597] gi|307621683|gb|EFO00724.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597] Length = 457 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 6/142 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTSQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFI 161 D PE +E +E+ ++ I Sbjct: 339 TDL--PET-IETSELPEDIIRI 357 >gi|255521612|ref|ZP_05388849.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-175] Length = 301 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 61 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 120 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 121 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 178 Query: 140 IDC 142 D Sbjct: 179 TDL 181 >gi|227498485|ref|ZP_03928631.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226903943|gb|EEH89861.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 405 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L G NAGKS+L+N G +SIV+ K TT + + + ++ DTPG+ + Sbjct: 16 IGLFGCRNAGKSSLINALTGQDLSIVSDFKGTTTDPVSKAMEILPLGPVLITDTPGL-DD 74 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + ++ + ++ DI LVVD+ L LLKE +R +LI+NKID + Sbjct: 75 EGALGEKRVKKARFVLRSTDIALLVVDAALGLSEADQRLLKEFKERKVPYLLIVNKID-I 133 Query: 144 KPERLLEQAEIANKLVFI 161 LL QAE + L+F+ Sbjct: 134 YSAPLLPQAE-KDHLLFV 150 >gi|186682120|ref|YP_001865316.1| GTP-binding protein EngA [Nostoc punctiforme PCC 73102] gi|238691263|sp|B2J1L2|DER_NOSP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|186464572|gb|ACC80373.1| small GTP-binding protein [Nostoc punctiforme PCC 73102] Length = 456 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N FVG + +IV+ TTR + ++ +DT GI K Sbjct: 179 VAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDAIDTVIERDGQTYRLIDTAGIRKKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I ++ I+ AD+V LV+D+ + L I + I+++NK D Sbjct: 239 HIEYGTEFFSINRAFKAIRRADVVLLVLDAVDGVTEQDQKLAGRIIEEGRACIIVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V+ + + + ++L F E +T VSA G + +L Sbjct: 299 AVEKDSYTIYDYEKTLQSRLHFTEWAETIFVSALSGQRVEKIL 341 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKSTLVNR G + +IV + TR + + +DT G +FN Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPAFWNGREFLVVDTGGLVFND 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + + + + A VVD ++ + + ++ ++L +NK C Sbjct: 66 DTEFLPLIRQQAMTALAEACAAIFVVDGQTGPTSADQEIAEWMRQQRVPVLLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P++ L QA +L E + +SA G G ++L+ L + +P Sbjct: 124 SPDQGLMQAAEFWELGLGEP-YPISAIHGSGTGELLDELVNHIP 166 >gi|147677944|ref|YP_001212159.1| GTP-binding protein EngA [Pelotomaculum thermopropionicum SI] gi|189037152|sp|A5D1U6|DER_PELTS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146274041|dbj|BAF59790.1| predicted GTPase [Pelotomaculum thermopropionicum SI] Length = 440 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR VG +V+IV + TR + +DT G+ F Sbjct: 5 VVAIVGRPNVGKSTLFNRIVGNRVAIVEGEPGVTRDRLYQDAEWSGRSFTLVDTGGLDFK 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + + R + I+ AD V LVVD+ L ++ I + +L+ NK++ Sbjct: 65 ESDEIIQGVRRQAEIAIREADAVLLVVDAKAGLNPGDEEVASIIRRAEKPALLVANKVEK 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 LEQ +L + VSA +G D+L+ L LP Sbjct: 125 FDS---LEQIYDFYRL-GLGDPLPVSAAEGLNTGDLLDRLVEMLP 165 >gi|309775110|ref|ZP_07670122.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 3_1_53] gi|308917065|gb|EFP62793.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 3_1_53] Length = 443 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+L+N + + +IVT TTR IV G + + + +DT GI D Sbjct: 223 AIVGKPNVGKSSLLNALLEEEKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRETSD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 ++ I+ S I A +V +V+D+ R L +LLK R I++ NK D K Sbjct: 283 VVEQIGIQRSLKAITDAQLVIVVLDNSRALDEQDRELLK--LTRDKTRIIVYNKTDVSK 339 >gi|90194128|gb|ABD92625.1| ThdF [Mannheimia glucosida] Length = 428 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +A D ++ I+ +W I AD V L++DS Sbjct: 263 LRDASDEVERIGIQRAWEEIAQADHVLLMIDS 294 >gi|330975909|gb|EGH75975.1| GTP-binding protein Der [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 490 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 316 WDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSA 368 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 >gi|330894498|gb|EGH27159.1| GTP-binding protein Der [Pseudomonas syringae pv. mori str. 301020] Length = 490 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 316 WDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSA 368 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S IK AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIKEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 >gi|222530701|ref|YP_002574583.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM 6725] gi|222457548|gb|ACM61810.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM 6725] Length = 455 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 4/122 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG +VG N GKS+L+NR + + +IVT TTR ++ ++ + I+ DT G Sbjct: 218 KSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +D K+ ++ + +I+ AD+V +V+S L+ DL A ++ R I+I+NK Sbjct: 278 VRKTEDIVEKIGVKKTLESIERADLVLFMVESSGILQ---EDLEIFEAIKNKRFIVIVNK 334 Query: 140 ID 141 ID Sbjct: 335 ID 336 >gi|149375642|ref|ZP_01893411.1| tRNA modification GTPase TrmE [Marinobacter algicola DG893] gi|149360044|gb|EDM48499.1| tRNA modification GTPase TrmE [Marinobacter algicola DG893] Length = 456 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ ++ Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTAVEGTTRDVLREHIHIDGMPLHIIDTAGLRDSP 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+ AD + L+VD+ + H L + + + L +I NK+D Sbjct: 279 DEVEQIGIARAWDEIRQADRILLMVDATTTPETEPHQLWPDFIDQLPSGAPLTVIRNKVD 338 >gi|253569670|ref|ZP_04847079.1| tRNA modification GTPase mnmE [Bacteroides sp. 1_1_6] gi|251840051|gb|EES68133.1| tRNA modification GTPase mnmE [Bacteroides sp. 1_1_6] Length = 465 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VDS + I L ++I R +LI++ NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDSS-DASSQIKQLSEKIIPRCEEKQLIVVFNKADL 341 Query: 143 VKPER 147 ++ ++ Sbjct: 342 IEEKQ 346 >gi|190171176|gb|ACE63658.1| ThdF [Citrobacter koseri] Length = 439 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 19/184 (10%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 IA+ ++L ++ NK D L +E+ + LV +SA G G D + N+L Sbjct: 313 IARLPAKLPITVVRNKADITG--ETLGISEVNGHSLV------RLSARTGEGVDVLRNHL 364 Query: 183 CSTL 186 ++ Sbjct: 365 KQSM 368 >gi|257866268|ref|ZP_05645921.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30] gi|257873216|ref|ZP_05652869.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10] gi|257800226|gb|EEV29254.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30] gi|257807380|gb|EEV36202.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10] Length = 481 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 241 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 300 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + A+++ LV++ L LL+ A SR I++LNK Sbjct: 301 IRETEDIVEKIGVERSRKALAEAELILLVLNQSEGLTQEDKQLLELTA--GSRRIILLNK 358 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D ++P+ L AE+A + E F VS G D Sbjct: 359 TD-LEPK--LATAELA-QYAADEPIFSVSVLTSEGLD 391 >gi|255657633|ref|ZP_05403042.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-23m63] Length = 459 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N +G +IVT TTR ++ V+ K + +DT G Sbjct: 219 REGLKTVIVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD++ +V+D+ R+L ++L+++ + + I++LNK Sbjct: 279 IRDTDDIVEKIGVERSKESFTSADLIVMVLDASRKLSEEDIEILEKL--KDKQTIVLLNK 336 Query: 140 IDC---VKPERLLEQAE 153 D ++ E++L+ E Sbjct: 337 NDLKQEIEEEKILKYVE 353 >gi|172035176|ref|YP_001801677.1| GTP-binding protein EngA [Cyanothece sp. ATCC 51142] gi|226706247|sp|B1X0B0|DER_CYAA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|171696630|gb|ACB49611.1| GTP-binding protein [Cyanothece sp. ATCC 51142] Length = 452 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+++G N GKS+L+N F+G + +IV+ TTR + +V ++ +DT GI K Sbjct: 179 VSIIGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDAIDTVVERGDNTYRLIDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ AD+V LV+D+ + L I I+++NK D Sbjct: 239 NVNYGAEFFSINRAFKAIRRADVVLLVIDAIDGVTDQDIKLADRIIDEGRAAIIVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V+ + + ++ ++L F+E VSA G +++ Sbjct: 299 AVEKDSYTIYDYKQKVMDRLYFMEWADIIFVSAMSGKRVENIF 341 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 14/179 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPG-IF 81 VA++G N GKSTLVNR + +IV + T R+ +++ Q+V DT G +F Sbjct: 6 VAIIGRPNVGKSTLVNRLAKDRQAIVHDQPGITRDRTYRPAFWCDRDFQVV--DTGGLVF 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + L+ + + + A VVD ++ + ++ ++L +NK Sbjct: 64 DDDTEFLPLIREQAMAALTEASAAIFVVDGQLGPTAGDREISDWLRRQKVPVLLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 C PE L QA +L E + +S G G ++L+ L + LP S D++ D Sbjct: 122 CESPEMGLIQAAEFWELGLGEP-YPISGIHGSGTGELLDQLITYLP------SPDELPD 173 >gi|238926048|ref|YP_002939566.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656] gi|238877725|gb|ACR77432.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656] Length = 458 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 9/153 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG +IVT TTR ++ ++ + +DT GI + +D Sbjct: 226 IIGKPNAGKSSLLNVLVGTDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDV 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ ++ + AD++ VVDS L N +D++ I + + +++LNK D Sbjct: 286 VEKIGVKKAMEHANGADLIIYVVDSSVALDDNDYDIINFI--KDKKAVILLNKSDLASK- 342 Query: 147 RLLEQAEIANKLVFIEKTFM-VSATKGHGCDDV 178 A+ KLV +KT + VSA + G D++ Sbjct: 343 ---VSADDIKKLV--DKTVISVSAKESSGIDEL 370 >gi|197364644|ref|YP_002144281.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|254811495|sp|B5BIL9|MNME_SALPK RecName: Full=tRNA modification GTPase mnmE gi|197096121|emb|CAR61717.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 454 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N L Sbjct: 321 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNNLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|254360929|ref|ZP_04977075.1| possible tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica PHL213] gi|261493844|ref|ZP_05990356.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495110|ref|ZP_05991574.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092408|gb|EDN73471.1| possible tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica PHL213] gi|261309180|gb|EEY10419.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310446|gb|EEY11637.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 452 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 212 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 271 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +A D ++ I+ +W I AD V L++DS Sbjct: 272 LRDASDEVERIGIQRAWEEIAQADHVLLMIDS 303 >gi|300692994|ref|YP_003753989.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Ralstonia solanacearum PSI07] gi|299080054|emb|CBJ52729.2| GTPase involved in tRNA modification and in thiophene and furan oxidation [Ralstonia solanacearum PSI07] Length = 474 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 20/155 (12%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 206 GQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 265 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V+ + + + +DT G+ + +D ++ I +W+ I AD+V ++D+ Sbjct: 266 TRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDAA---D 322 Query: 117 VNIHDLLKEIAKRSSRL----------ILILNKID 141 H L E A +R+ + ++NKID Sbjct: 323 YRAHGLCAEDAAIDARIAGHVPSGVPTLRVINKID 357 >gi|300705596|ref|YP_003747199.1| GTPase [Ralstonia solanacearum CFBP2957] gi|299073260|emb|CBJ44619.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Ralstonia solanacearum CFBP2957] Length = 434 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 9/127 (7%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 166 GQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 225 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS--HRE 114 TR V+ + + + +DT G+ + +D ++ I +W+ I AD+V ++D+ +R Sbjct: 226 TRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDAADYRA 285 Query: 115 LKVNIHD 121 L ++ D Sbjct: 286 LGLSAED 292 >gi|282890013|ref|ZP_06298547.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500105|gb|EFB42390.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 493 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 13/180 (7%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 KD + SR +ALVG N GKS L N+ G K++IV TR + Sbjct: 2 KDLIM--SRLPKLALVGRPNVGKSALFNKICGKKIAIVDEAEGVTRDRLYAEADLFGRHF 59 Query: 73 VFLDTPGIFNAKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +DT GI D+ +++ + R + I+ AD + +VVDSH L H++ + + + S Sbjct: 60 QVIDTGGINPRSDAPFNEEVKRQAEIAIEEADTIVMVVDSHVGLTALDHEVAQILLRTSK 119 Query: 132 RLILILNKIDCVKPERLLEQAE---IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 L L +NKID E L+ + + I NK+ VSAT+ ++L L L Sbjct: 120 PLCLAVNKIDHPSQEHLIYEFQSLGITNKVA-------VSATQSWRIAELLEAALDPLSL 172 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 10/171 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ + +A++G N GKS+L+N + + IV+ TTR V + E +D Sbjct: 177 EETDKPLAIAIIGRPNVGKSSLINYLLDEQRCIVSPIPGTTRDSVDVSFTHNEHAYTLID 236 Query: 77 TPGIFNAKDSYHKLMIRLSW----STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 T GI K S H+++ + + I ADI LV+DS + + V + I + Sbjct: 237 TAGI-RRKHSEHEVVDKFAAIRTERAIARADICLLVLDSQQGITVQEKRIANLIEEAGKG 295 Query: 133 LILILNKIDCVKPERLLE-QAEIANKLVFIE---KTFMVSATKGHGCDDVL 179 IL+ NK D VK R+ EI ++ F+ K FM SA G + + Sbjct: 296 CILLFNKWDLVKGFRMEHCLKEIESEASFLNHCPKIFM-SAKTGRNVEKIF 345 >gi|326316284|ref|YP_004233956.1| ribosome-associated GTPase EngA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373120|gb|ADX45389.1| ribosome-associated GTPase EngA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 447 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR ++ +IV TR G + + + +DT G + Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKLGKHEYIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A ++ M + + + AD+V VVD+ L HD+ + + +L+ NK + Sbjct: 64 ASSGIYREMAKQTQQAVAEADVVIFVVDARAGLSAQDHDIANYLRRLGKPCLLVGNKAEG 123 Query: 143 VKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++ E A++A + + + VSA G G +L TL L Sbjct: 124 MR-----EGAQLAEFYELGLGEVLPVSAAHGQGVRSLLETALETLQL 165 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTL+N ++G + + TTR + Q +DT G+ Sbjct: 182 LAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQQFELIDTAGLRRKG 241 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L++D+ + + + I + ++L +NK D Sbjct: 242 KVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAVNKWD 301 Query: 142 CVK--PERLLEQAEIANKLVFIE--KTFMVSATKGHG 174 V ++LE++ I +L F++ +SA K G Sbjct: 302 AVDDYGRQMLERS-IETRLSFLKFASLHFISAKKRQG 337 >gi|229494892|ref|ZP_04388645.1| ribosome-associated GTPase EngA [Rhodococcus erythropolis SK121] gi|229318250|gb|EEN84118.1| ribosome-associated GTPase EngA [Rhodococcus erythropolis SK121] Length = 475 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + + + DT G Sbjct: 40 TLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWAGRRFLVQDTGGWEPD 99 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + R + + AD + LVVD+ + + + + + +IL+ NK+D Sbjct: 100 AKGLQQAVARQAELAMGTADAILLVVDAVVGATATDEAVARVLRRSKTPVILVANKVDDG 159 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E +E+A + + + VSAT G G D+L+ + LP P Sbjct: 160 RTE-----SEVAALWSLGLGQPYSVSATHGRGTGDLLDEVLEKLPETP 202 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 12/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G + S+V + TT V IV F+DT G+ Sbjct: 214 VALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKRV 273 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + Y L + S I+ A++ L++D+H + +L +A L++ N Sbjct: 274 SHASGAEFYASLRTK---SAIEAAEVAILLIDAHEPITEQDLRVLSMVADTGRALVIAFN 330 Query: 139 KIDCVKPE-RLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTL 186 K D V + RL+ E+ LV + + +SA G ++ L + L Sbjct: 331 KWDLVDEDRRLMLDKEVDRDLVRVPWAQRVNISAHTGRAVAKLVPALDTAL 381 >gi|190171174|gb|ACE63657.1| ThdF [Citrobacter koseri] Length = 439 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 19/184 (10%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 IA+ ++L ++ NK D L +E+ + LV +SA G G D + N+L Sbjct: 313 IARLPAKLPITVVRNKADITG--ETLGISEVNGHSLV------RLSARTGEGVDVLRNHL 364 Query: 183 CSTL 186 ++ Sbjct: 365 KQSM 368 >gi|56415716|ref|YP_152791.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|81361369|sp|Q5PKU1|MNME_SALPA RecName: Full=tRNA modification GTPase mnmE gi|56129973|gb|AAV79479.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 454 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ +A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 261 IDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 320 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + E L + LV +SA G G D + N L Sbjct: 321 IARLPKNLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNNLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|32491325|ref|NP_871579.1| hypothetical protein WGLp576 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166532|dbj|BAC24722.1| b2511 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 456 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N+GKSTL+N + S V++ TT+ ++ + S KE +F+DT G+ K Sbjct: 196 IAIIGRPNSGKSTLMNCILRQNRSTVSNSPGTTKDVLYSLYSNKEKTYLFIDTAGLVKKK 255 Query: 85 DSYH--KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + H K +I+ + + IK D+ LV+DS + L I K + LI+ +NK+D Sbjct: 256 NFVHINKSVIKNTLNVIKKIDVSILVIDSCVGITKQDLFFLNYILKYNKSLIIAVNKLD 314 >gi|332360300|gb|EGJ38113.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK355] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL EI++ S+R++L LNK Sbjct: 281 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEQLTDQDRQLL-EISQDSNRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|307132056|ref|YP_003884072.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Dickeya dadantii 3937] gi|306529585|gb|ADM99515.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Dickeya dadantii 3937] Length = 495 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 56/120 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + ++ + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L H + + + R L+ NK+D + Sbjct: 64 EDGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADHAIAQHLRMREKDTFLVANKVDGI 123 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + V +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGRDYVLIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 270 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + E + +L FI+ + +SA G G ++ Y CST Sbjct: 330 GLTQEIKDQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCST 381 >gi|293365349|ref|ZP_06612066.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis ATCC 35037] gi|307703891|ref|ZP_07640832.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037] gi|291316799|gb|EFE57235.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis ATCC 35037] gi|307622726|gb|EFO01722.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|28868645|ref|NP_791264.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato str. DC3000] gi|213971514|ref|ZP_03399625.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato T1] gi|301386119|ref|ZP_07234537.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato Max13] gi|302060181|ref|ZP_07251722.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato K40] gi|302135124|ref|ZP_07261114.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999588|sp|Q886Y6|DER_PSESM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28851883|gb|AAO54959.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato str. DC3000] gi|213923706|gb|EEB57290.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato T1] gi|330872875|gb|EGH07024.1| GTP-binding protein Der [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965919|gb|EGH66179.1| GTP-binding protein Der [Pseudomonas syringae pv. actinidiae str. M302091] gi|331019376|gb|EGH99432.1| GTP-binding protein Der [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 489 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 197 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 256 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 257 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 314 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 315 WDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSA 367 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 >gi|302185741|ref|ZP_07262414.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae 642] gi|330950783|gb|EGH51043.1| GTP-binding protein Der [Pseudomonas syringae Cit 7] Length = 490 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 316 WDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSA 368 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 >gi|242255838|gb|ACS88903.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + V TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|67922213|ref|ZP_00515727.1| Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] gi|67855916|gb|EAM51161.1| Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] Length = 465 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+++G N GKS+L+N F+G K +IV+ TTR + +V E +DT GI K Sbjct: 192 VSIIGRPNVGKSSLLNAFLGKKRAIVSPISGTTRDAIDTVVERGEKTYRLIDTAGIRRKK 251 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ AD+V LV+D+ + L I I+++NK D Sbjct: 252 NVNYGAEFFSINRAFKAIRRADVVLLVIDAIEGVTDQDIKLADRIIDEGRAAIIVVNKWD 311 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + + + ++ ++L F+E VSA G + + Sbjct: 312 AIDKDSYTIYEYKKKVMSRLYFMEWADLIFVSAMSGKRVEKIF 354 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 14/179 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPG-IF 81 VA++G N GKST VNR + +IV + T R+ ++++ Q+V DT G +F Sbjct: 19 VAIIGRPNVGKSTFVNRLAKDRQAIVHDEPGITRDRTYRPAFWADRDFQVV--DTGGLVF 76 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + L+ + + + A + VVD L ++ + ++ ++L +NK Sbjct: 77 DDETEFLPLIREQAMAALTEASVAIFVVDGQLGLTAGDSEIADWLRQQEVPVLLAVNK-- 134 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 C P++ L QA +L E + VS G+G ++L+ L + LP S D++ D Sbjct: 135 CESPDQGLIQAAEFWELGLGE-PYPVSGIHGNGTGELLDELITYLP------SPDELPD 186 >gi|289626149|ref|ZP_06459103.1| GTP-binding protein EngA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649055|ref|ZP_06480398.1| GTP-binding protein EngA [Pseudomonas syringae pv. aesculi str. 2250] gi|298486027|ref|ZP_07004101.1| GTP-binding protein EngA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159504|gb|EFI00551.1| GTP-binding protein EngA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869573|gb|EGH04282.1| GTP-binding protein Der [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 490 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 316 WDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSA 368 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 >gi|284031167|ref|YP_003381098.1| small GTP-binding protein [Kribbella flavida DSM 17836] gi|283810460|gb|ADB32299.1| small GTP-binding protein [Kribbella flavida DSM 17836] Length = 460 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V +DT G Sbjct: 26 VLAIVGRPNVGKSTLVNRIIGRREAVVEDTPGVTRDRVSYDADWAGRAFTVVDTGGWDPD 85 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 L+ + I AD V VVD+ + +++ + K ++L NK+D Sbjct: 86 AVGMAALVAAQAEVAIHAADAVLFVVDATVGITDADEAVVRVLRKSGKPVVLAANKVDDQ 145 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E AE N I + F +SA G G D+L+ + + LP AP Sbjct: 146 RVE-----AEAMNLWSLGIGEPFPISAMHGRGTGDMLDAVLAALPEAP 188 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VA+VG N GKS+L+N+ +V+ TT V +++ Q F+DT GI Sbjct: 201 VAIVGKPNVGKSSLLNKVAKEDRVVVSDVSGTTVDPVDELITLAGRQWRFIDTAGIRRKV 260 Query: 82 -NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N + + +R + S I+ A++V +V+D+ + ++ + + L++ NK Sbjct: 261 KNVQGHEYYASLRTN-SAIERAEVVVVVIDASEPMTEQDLRIMNTVEEAGKALVIAYNKW 319 Query: 141 DCVKPER 147 D V +R Sbjct: 320 DLVDEDR 326 >gi|190171178|gb|ACE63659.1| ThdF [Citrobacter koseri] Length = 439 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 19/184 (10%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEI-ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 IA+ ++L ++ NK D L +E+ + LV +SA G G D + N+L Sbjct: 313 IARLPAKLPITVVRNKADITG--ETLGISEVNGHSLV------RLSARTGEGVDVLRNHL 364 Query: 183 CSTL 186 ++ Sbjct: 365 KQSM 368 >gi|30023508|ref|NP_835139.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 14579] gi|218234443|ref|YP_002370259.1| tRNA modification GTPase TrmE [Bacillus cereus B4264] gi|228924229|ref|ZP_04087500.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228961748|ref|ZP_04123351.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pakistani str. T13001] gi|229112897|ref|ZP_04242428.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-15] gi|229130730|ref|ZP_04259683.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-Cer4] gi|229148034|ref|ZP_04276373.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST24] gi|296505912|ref|YP_003667612.1| tRNA modification GTPase TrmE [Bacillus thuringiensis BMB171] gi|46577419|sp|Q814F6|MNME_BACCR RecName: Full=tRNA modification GTPase mnmE gi|29899069|gb|AAP12340.1| Thiophene and furan oxidation protein ThdF [Bacillus cereus ATCC 14579] gi|218162400|gb|ACK62392.1| tRNA modification GTPase TrmE [Bacillus cereus B4264] gi|228635459|gb|EEK91950.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST24] gi|228652747|gb|EEL08632.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-Cer4] gi|228670576|gb|EEL25889.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-15] gi|228797942|gb|EEM44952.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228835447|gb|EEM80817.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296326964|gb|ADH09892.1| tRNA modification GTPase TrmE [Bacillus thuringiensis BMB171] Length = 458 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER+ E A Sbjct: 336 TDLPQAIDMERVTELA 351 >gi|298243292|ref|ZP_06967099.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963] gi|297556346|gb|EFH90210.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963] Length = 451 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 76/169 (44%), Gaps = 13/169 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL+NR GA+ T R E + + DT G Sbjct: 218 VALVGYTNAGKSTLLNRLSGAQKLAEDKLFATLDPTTRRARIEGGQEFLLTDTVGFVQRL 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS------HRELKVNIHDLLKEIAKRSSRLILILN 138 R + + AD++ VVDS H+ L V ++L+EI +++ LN Sbjct: 278 PHTLVAAFRATLEEVNAADLLVHVVDSSHPHVNHQILAVE--EVLEEIGAGGMPIVIALN 335 Query: 139 KIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K D ++P L E IA L ++ VSA KG G D+L + L Sbjct: 336 KSDNLEPGTTLPPLEGIAATLPQVQ----VSALKGTGISDLLRCISQAL 380 >gi|296452686|ref|ZP_06894377.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08] gi|296880062|ref|ZP_06904031.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07] gi|296258468|gb|EFH05372.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08] gi|296428929|gb|EFH14807.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07] Length = 462 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N +G +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLKTVIVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD++ +V+D+ R+L ++L+++ + + I++LNK Sbjct: 282 IRDTDDIVEKIGVERSKESFTSADLIVMVLDASRKLSEEDIEILEKL--KDKQTIVLLNK 339 Query: 140 IDC---VKPERLLEQAE 153 D ++ E++L+ E Sbjct: 340 NDLKQEIEEEKILKYVE 356 >gi|226306741|ref|YP_002766701.1| GTP-binding protein EngA [Rhodococcus erythropolis PR4] gi|226185858|dbj|BAH33962.1| probable GTP-binding protein EngA [Rhodococcus erythropolis PR4] Length = 475 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + + + DT G Sbjct: 40 TLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWAGRRFLVQDTGGWEPD 99 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + R + + AD + LVVD+ + + + + + +IL+ NK+D Sbjct: 100 AKGLQQAVARQAELAMGTADAILLVVDAVVGATTTDEAVARVLRRSKTPVILVANKVDDG 159 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E +E+A + + + VSAT G G D+L+ + LP P Sbjct: 160 RTE-----SEVAALWSLGLGQPYSVSATHGRGTGDLLDEVLEKLPETP 202 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 12/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G + S+V + TT V IV F+DT G+ Sbjct: 214 VALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKRV 273 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + Y L + S I+ A++ L++D+H + +L +A L++ N Sbjct: 274 SHASGAEFYASLRTK---SAIEAAEVAILLIDAHEPITEQDLRVLSMVADTGRALVIAFN 330 Query: 139 KIDCVKPE-RLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTL 186 K D V + RL+ E+ LV + + +SA G ++ L + L Sbjct: 331 KWDLVDEDRRLMLDKEVDRDLVRVPWAQRVNISAHTGRAVAKLVPALDTAL 381 >gi|207741910|ref|YP_002258302.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609] gi|206593296|emb|CAQ60223.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609] Length = 292 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 24 GQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 83 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V+ + + + +DT G+ + +D ++ I +W+ I AD+V ++D+ Sbjct: 84 TRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDAA---D 140 Query: 117 VNIHDLLKEIAKRSSRL----------ILILNKID---CVKPERLLEQ 151 H L E A +R+ + ++NKID P R+ Q Sbjct: 141 YRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAATPARVDAQ 188 >gi|313683277|ref|YP_004061015.1| ribosome-associated GTPase enga [Sulfuricurvum kujiense DSM 16994] gi|313156137|gb|ADR34815.1| ribosome-associated GTPase EngA [Sulfuricurvum kujiense DSM 16994] Length = 511 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR + + +I + + TTR + + + + ++ LDT G+ Sbjct: 4 LAIIGRPNVGKSSLFNRLLKQRDAITSEQAGTTRDVKKRVAVVVDKEVEILDTGGLDEGC 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + Y ++ + S ADI+ +VD + + L E+ + L++NKID K Sbjct: 64 ELYDRIKEK-SLKAAHEADIILFMVDGKSLPEEDDKKLFYELESMGKAIALVVNKIDNDK 122 Query: 145 -PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+L E E ++ F +S +LN++ S LP Sbjct: 123 MQEKLWEYYEFGT-----DRIFGISVAHNRSLLPLLNWIASELP 161 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 10/128 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N +G S+V+ TT + V + +I F+DT GI Sbjct: 242 VAIIGRVNVGKSSLLNALLGEDRSVVSSVAGTTIDPIDETVEYNDKKITFIDTAGIRKRG 301 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRL--ILILN 138 K + + ++ ADI LV+D+ + DL ++IA +RL +++LN Sbjct: 302 KILGIEKYALMRTEEMLETADIALLVLDASQPF----MDLDEKIAGFVDKNRLACLIVLN 357 Query: 139 KIDCVKPE 146 K D E Sbjct: 358 KWDMAPRE 365 >gi|15606214|ref|NP_213591.1| tRNA modification GTPase TrmE [Aquifex aeolicus VF5] gi|6647876|sp|O67030|MNME_AQUAE RecName: Full=tRNA modification GTPase mnmE gi|2983408|gb|AAC06992.1| thiophene and furan oxidation protein [Aquifex aeolicus VF5] Length = 448 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 13/160 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +A+VG N GKS+L N + + +IVT TTR + + K + +DT G Sbjct: 213 REGVKLAIVGRPNVGKSSLFNALLKEERAIVTDIAGTTRDFIEETLQIKGVPVRLVDTAG 272 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I KD ++ + S +K AD++ V+D+ +E+ + +EI ++ I++ NK Sbjct: 273 IRETKDLVERIGVERSKQKVKEADLILFVIDASQEITEEDLRIYEEIKEKDH--IVVANK 330 Query: 140 IDCVKPERLLEQAEIANKLVFI-EKTFMVSATKGHGCDDV 178 +D AN F EK VSA KG G +++ Sbjct: 331 VDL---------GIRANLEKFKGEKIVKVSALKGTGLEEL 361 >gi|291526551|emb|CBK92138.1| tRNA modification GTPase trmE [Eubacterium rectale DSM 17629] Length = 458 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 9/151 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG++ +IVT TTR ++ ++ + +DT GI + +D Sbjct: 226 IIGKPNAGKSSLLNVLVGSERAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDV 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ ++ + AD++ VVDS L N +D++ I + + +++LNK D Sbjct: 286 VEKIGVKKAMEHADEADLIIYVVDSSVVLDDNDYDIINFI--KDKKAVILLNKSDLASK- 342 Query: 147 RLLEQAEIANKLVFIEKTFM-VSATKGHGCD 176 A+ KLV +KT + VSA + G D Sbjct: 343 ---VSADDIKKLV--DKTVISVSAKESSGID 368 >gi|312112752|ref|YP_003991068.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1] gi|311217853|gb|ADP76457.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1] Length = 461 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 221 REGLATVIIGRPNVGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + SW +K AD++ LV++ H L L + + I+I+NK Sbjct: 281 IRETEDIVERIGVERSWQMLKEADLILLVLNYHEPLTAEDEKLFDMV--KGMDFIVIVNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|229072949|ref|ZP_04206145.1| tRNA modification GTPase mnmE [Bacillus cereus F65185] gi|228710195|gb|EEL62173.1| tRNA modification GTPase mnmE [Bacillus cereus F65185] Length = 458 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER+ E A Sbjct: 336 TDLPQAIDMERVTELA 351 >gi|223985795|ref|ZP_03635838.1| hypothetical protein HOLDEFILI_03144 [Holdemania filiformis DSM 12042] gi|223962243|gb|EEF66712.1| hypothetical protein HOLDEFILI_03144 [Holdemania filiformis DSM 12042] Length = 434 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VG N GKST+ NR +G +VSIV TR + G + +DT GI Sbjct: 4 GVVAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKGTWLTQDFRLIDTGGIQL 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + + + I+ AD++ VV+ R+ + + + +RS + ++L +NKID Sbjct: 64 ENQPFQEEIKAQVEIAIEEADVILFVVNG-RDGVTGDDEFIARMLRRSGKPVVLAVNKID 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L+ + + + VS + G G DV++ L P Sbjct: 123 ----DATLQGNIYEFYALGLSEPIAVSGSHGIGIGDVMDALVGAFP 164 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+LVN + + IV+ TTR V Q V +DT GI Sbjct: 177 AIIGRPNVGKSSLVNALLKEERVIVSDIEGTTRDAVDTPFEHDGKQYVVVDTAGIRKRGK 236 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + S I+ D+V V+D ++ + + +I++ NK D Sbjct: 237 VYENIEKYSVLRAMSAIERCDVVLFVIDGESGIREQDKHVAGYAHEAGKPIIIVYNKWDA 296 Query: 143 VK 144 V+ Sbjct: 297 VE 298 >gi|223937585|ref|ZP_03629488.1| small GTP-binding protein [bacterium Ellin514] gi|223893748|gb|EEF60206.1| small GTP-binding protein [bacterium Ellin514] Length = 519 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 19/198 (9%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG +A+VG N GKS L NR G +++IV TR V V +DT GI Sbjct: 2 SGLIAIVGRPNVGKSALFNRIAGRRIAIVHDMPGVTRDRVSAEVEWGGHAFTLVDTGGIG 61 Query: 82 -----NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSRL 133 A D K + I+ A ++ L + ++ I L +E+A +RS + Sbjct: 62 LLRREKAADVITKAALEQVDLAIEAAHVIILAAN----VQEGIVPLDQEVADKLRRSGKP 117 Query: 134 ILI-LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +L+ NK+D K +E A + + +K F VSA G G D++N + LP + Sbjct: 118 VLVAANKVDTQK----VEAAALEFTELGFDKVFPVSAIHGEGIVDLMNAATALLPPREIL 173 Query: 193 YSADQISDLPMFHFTAEI 210 A+ D +F T E+ Sbjct: 174 EKAEVDED--VFEGTPEV 189 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 9/128 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-----IVFLDTPG 79 +A+VG N GKS+++N ++ IV+ TTR V + E E+ + +DT G Sbjct: 203 LAIVGRPNVGKSSIINALTQSERVIVSPIPGTTRDAV-DVPFEVEADGIRQSYLLIDTAG 261 Query: 80 IFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + ++ DS ++ + +I ADI LV+D+ + + +I + I++ Sbjct: 262 LRKSRRVDDSVEFYSVKRTEDSIARADICVLVLDAEAGITEQDKKVADKIVEERRACIVV 321 Query: 137 LNKIDCVK 144 +NK D V+ Sbjct: 322 VNKWDLVE 329 >gi|157144348|ref|YP_001451667.1| tRNA modification GTPase TrmE [Citrobacter koseri ATCC BAA-895] gi|157081553|gb|ABV11231.1| hypothetical protein CKO_00052 [Citrobacter koseri ATCC BAA-895] Length = 466 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 213 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 272 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 273 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 332 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D + E L + LV +SA G G D + N+L Sbjct: 333 IARLPAKLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 385 Query: 184 STL 186 ++ Sbjct: 386 QSM 388 >gi|260685218|ref|YP_003216503.1| tRNA modification GTPase TrmE [Clostridium difficile CD196] gi|260688877|ref|YP_003220011.1| tRNA modification GTPase TrmE [Clostridium difficile R20291] gi|260211381|emb|CBA67036.1| putative tRNA modification GTPase [Clostridium difficile CD196] gi|260214894|emb|CBE07700.1| putative tRNA modification GTPase [Clostridium difficile R20291] Length = 462 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N +G +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLKTVIVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD++ +V+D+ R+L ++L+++ + + I++LNK Sbjct: 282 IRDTDDIVEKIGVEKSKESFTSADLIVMVLDASRKLSEEDIEILEKL--KDKQTIVLLNK 339 Query: 140 IDC---VKPERLLEQAE 153 D ++ E++L+ E Sbjct: 340 NDLKQEIEEEKILKYVE 356 >gi|77919007|ref|YP_356822.1| GTP-binding protein EngA [Pelobacter carbinolicus DSM 2380] gi|123574290|sp|Q3A4Q5|DER_PELCD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77545090|gb|ABA88652.1| putative Era-like GTP-binding protein [Pelobacter carbinolicus DSM 2380] Length = 439 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 7/158 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR +G + +IV TR V+ + V +DT G A Sbjct: 3 VVAIVGRPNVGKSTLFNRILGTRRAIVEDYPGVTRDRNYAQVTRYGTPFVLIDTGGFEPA 62 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL-ILNKID 141 ++ K M S ++ AD++ VVD+ L + D + + +RS + +L ++NK+D Sbjct: 63 SQNRLLKQMREQSELAVEEADVILFVVDAKEGLTPS-DDEVAGMLRRSGKPVLYVVNKVD 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 E A + +++ + VSA G G DD++ Sbjct: 122 GDSH----EAAASEFYALGVDQLYTVSAEHGRGMDDLM 155 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 38/208 (18%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGI--- 80 +A++G N GKS+L+NR +G + + TTR SI V K+S V +DT GI Sbjct: 178 LAVIGRPNVGKSSLINRMIGVERLVANPTAGTTRDSIDTPFVYNKKS-YVLIDTAGIRRK 236 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + S ++ A +V +V+D+ + + +R ++L++NK Sbjct: 237 GRVQQKLEKYSVIQSLKAMERAHVVLVVIDAEEGVTEQDLTVAGYALERGRAVLLVVNKW 296 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC----DDVLNYLCSTLPLAPWVYSAD 196 D V TK HG + + + LP AP ++ Sbjct: 297 DLV--------------------------TKDHGTMKQYTEKVRHAFKFLPFAPIIF-VS 329 Query: 197 QISDLPMFHFTAEITREKLFLHLHKEIP 224 +S + AE+ EK+ + ++++P Sbjct: 330 ALSGQRVSKIMAEV--EKVAIEFNRQVP 355 >gi|261340815|ref|ZP_05968673.1| ribosome-associated GTPase EngA [Enterobacter cancerogenus ATCC 35316] gi|288317241|gb|EFC56179.1| ribosome-associated GTPase EngA [Enterobacter cancerogenus ATCC 35316] Length = 491 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADSAIAKHLRSREKPTFLVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +QA + + + ++A+ G G +L + L PWV Sbjct: 124 D----ADQAVADFWSLGLGNIYPIAASHGRGVTSLLETV-----LLPWV 163 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 206 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREFVLIDTAGVRKRG 265 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 266 KITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 325 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 326 GLSNEVREQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 366 >gi|205829165|sp|A8ACL8|MNME_CITK8 RecName: Full=tRNA modification GTPase mnmE Length = 454 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D + E L + LV +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKAD-ITGETLGISEVNGHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|206970179|ref|ZP_03231132.1| tRNA modification GTPase TrmE [Bacillus cereus AH1134] gi|228955734|ref|ZP_04117729.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229082698|ref|ZP_04215145.1| tRNA modification GTPase mnmE [Bacillus cereus Rock4-2] gi|229193735|ref|ZP_04320676.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 10876] gi|206734756|gb|EDZ51925.1| tRNA modification GTPase TrmE [Bacillus cereus AH1134] gi|228589760|gb|EEK47638.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 10876] gi|228700610|gb|EEL53149.1| tRNA modification GTPase mnmE [Bacillus cereus Rock4-2] gi|228803962|gb|EEM50586.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 458 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER+ E A Sbjct: 336 TDLPQAIDMERVTELA 351 >gi|146308511|ref|YP_001188976.1| GTP-binding protein EngA [Pseudomonas mendocina ymp] gi|166225842|sp|A4XY28|DER_PSEMY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145576712|gb|ABP86244.1| small GTP-binding protein [Pseudomonas mendocina ymp] Length = 492 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDAIVGDLSGLTRDRQYGEAKWQGRTYIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD V +VD+ + + + + + +R+ R L++NK+D + Sbjct: 64 EEGIDAKMAEQSLQAIEEADAVLFLVDARAGMTASDQMIGEHLRRRNKRSFLVVNKVDNL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + + ++ G G +L + P Sbjct: 124 DVD--LARAEFSP--MGLGEPLAIAGAHGRGITQMLEAVLGIFP 163 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + IV + TTR + + + +DT G+ Sbjct: 199 LAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDDEKYTLIDTAGVRRRG 258 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 ++ K + + I+ +++V V+D+ RE V+ HD LL + + L++ LNK Sbjct: 259 KIFEAVEKFSVVKTLQAIQDSNVVVFVMDA-REGVVD-HDLNLLGFVLESGRALVIALNK 316 Query: 140 IDCV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + + ++ + E+ +L F++ +SA G G Sbjct: 317 WDGMDQGQKDYVKTELERRLFFVDFADIHFISALHGTGV 355 >gi|29349959|ref|NP_813462.1| tRNA modification GTPase TrmE [Bacteroides thetaiotaomicron VPI-5482] gi|32171810|sp|Q89Z26|MNME_BACTN RecName: Full=tRNA modification GTPase mnmE gi|29341870|gb|AAO79656.1| putative GTPase, ThdF family [Bacteroides thetaiotaomicron VPI-5482] Length = 465 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VDS + I L ++I R +LI++ NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDSS-DASSQIKQLSEKIIPRCEEKQLIVVFNKADL 341 Query: 143 VK 144 ++ Sbjct: 342 IE 343 >gi|296104190|ref|YP_003614336.1| GTP-binding protein EngA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058649|gb|ADF63387.1| GTP-binding protein EngA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 511 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 9/179 (5%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 +F + ++ VALVG N GKSTL NR + ++V TR G + + + Sbjct: 14 EFYEASNMVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFI 73 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DT GI +D M S I+ AD+V +VD+ L + K + R Sbjct: 74 CIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADSAIAKHLRSREKPT 133 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 L+ NK D + +QA + + + ++A+ G G +L + L PWV Sbjct: 134 FLVANKTDGIDA----DQAIADFWSLGLGDIYPIAASHGRGVTSLLETV-----LLPWV 183 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 6/162 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 226 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 285 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 286 KITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 345 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN 180 + E + E + +L FI+ + +SA G G ++ + Sbjct: 346 GLSNEVREQVKETLDFRLGFIDFARVHFISALHGSGVGNLFD 387 >gi|253578391|ref|ZP_04855663.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850709|gb|EES78667.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 441 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G K+SIV TR + V+ + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVTWLDKTFTMIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + D M + I AD++ + D H+ L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SSDIILSQMREQAQIAIDTADVIIFITDVHQGL-VDSDAKVADMLRRSGKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++ + +++ E N + I + +SA G D+L+ + P Sbjct: 124 SIQ-KFMMDVYEFYN--LGIGEPIPISAANRMGLGDMLDEVAKHFP 166 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKS+LVN+ +G IV+ TTR V V + +F+DT G+ Sbjct: 180 IAIVGKPNVGKSSLVNKLLGEDRVIVSDIAGTTRDAVDTRVKWQGKDYIFIDTAGLRRKG 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + + ++ AD+V +++D+ + + +R +I+ +NK D Sbjct: 240 KVKEEIERYSVIRTVTAVERADVVIVMIDASEGVTEQDAKIAGIAHERGKGVIIAVNKWD 299 Query: 142 CVK 144 ++ Sbjct: 300 AIE 302 >gi|218437570|ref|YP_002375899.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424] gi|218170298|gb|ACK69031.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424] Length = 458 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 12/186 (6%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 +E+ +I E + +++ + VA+VG N GKS+L+N + + +IVT TTR + Sbjct: 205 VEVNQILATAERGELLRNGLK---VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDV 261 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 V + I LDT GI +D K+ + S + AD++ L +D+ Sbjct: 262 VESQLVVGGIPIQVLDTAGIRETQDRVEKIGVERSRQAAQRADLILLTIDAQTGWTGEDE 321 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 ++ +++ R LILI+NK D L A+ N I + A K G +D+ Sbjct: 322 EIYQQVKHRP--LILIINKTD-------LASADTINYPWEITQIVTTVAAKSEGIEDLEQ 372 Query: 181 YLCSTL 186 + +++ Sbjct: 373 MILNSV 378 >gi|260771040|ref|ZP_05879968.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP 102972] gi|260613929|gb|EEX39120.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP 102972] gi|315178633|gb|ADT85547.1| tRNA modification GTPase trmE [Vibrio furnissii NCTC 11218] Length = 453 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + D+ + R S + +I NK+D Sbjct: 278 DEVEKIGIERAWDEIAQADRVLFMVDGTTTSATDPKDIWPDFVDRLPDSMGMTVIRNKVD 337 >gi|229051153|ref|ZP_04194697.1| tRNA modification GTPase mnmE [Bacillus cereus AH676] gi|228722216|gb|EEL73617.1| tRNA modification GTPase mnmE [Bacillus cereus AH676] Length = 458 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER+ E A Sbjct: 336 TDLPQAIDMERVTELA 351 >gi|153854261|ref|ZP_01995560.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814] gi|149753036|gb|EDM62967.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814] Length = 460 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 7/156 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N +G +IVT TTR ++ ++ K + +DT GI + +D Sbjct: 228 ILGKPNAGKSSLLNVLLGEDRAIVTDIAGTTRDVLEEHLNLKGISLNIMDTAGIRDTEDV 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + + AD++ V+D+ R L N ++L I + R I++LNK D + + Sbjct: 288 VEKIGVDRAKEYADKADLILYVIDASRPLDENDAEILHLI--KGKRAIILLNKSD-LDMQ 344 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 EQ E+ + IE +SA G +++ + L Sbjct: 345 VTKEQEELPEEFPVIE----ISAKNVQGIEELEDTL 376 >gi|117619237|ref|YP_858697.1| tRNA modification GTPase TrmE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166200466|sp|A0KQZ6|MNME_AERHH RecName: Full=tRNA modification GTPase mnmE gi|117560644|gb|ABK37592.1| tRNA modification GTPase TrmE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 453 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + + Sbjct: 218 VVIAGRPNAGKSSLLNALAGRESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQ 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LILILNKID 141 D ++ I +W+ I+ AD V +VD V+ ++ E R + L ++ NK D Sbjct: 278 DKVEQIGIERAWAEIEQADRVLFMVDGTTTAAVDPREIWPEFVDRLPKKIGLTVVRNKAD 337 >gi|126701303|ref|YP_001090200.1| tRNA modification GTPase TrmE [Clostridium difficile 630] gi|255102894|ref|ZP_05331871.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-63q42] gi|255308714|ref|ZP_05352885.1| tRNA modification GTPase TrmE [Clostridium difficile ATCC 43255] gi|123362962|sp|Q181S7|MNME_CLOD6 RecName: Full=tRNA modification GTPase mnmE gi|115252740|emb|CAJ70585.1| transfer RNA modification GTPase MnmE [Clostridium difficile] Length = 459 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N +G +IVT TTR ++ V+ K + +DT G Sbjct: 219 REGLKTVIVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD++ +V+D+ R+L ++L+++ + + I++LNK Sbjct: 279 IRDTDDIVEKIGVEKSKESFTSADLIVMVLDASRKLSEEDIEILEKL--KDKQTIVLLNK 336 Query: 140 IDC---VKPERLLEQAE 153 D ++ E++L+ E Sbjct: 337 NDLKQEIEEEKILKYVE 353 >gi|110639446|ref|YP_679655.1| GTP-binding protein EngA [Cytophaga hutchinsonii ATCC 33406] gi|123354325|sp|Q11QK1|DER_CYTH3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110282127|gb|ABG60313.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406] Length = 435 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 13/168 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKST NR VGA+++I+ + TR G +DT G Sbjct: 2 SNIVAIVGRPNVGKSTFFNRLVGARIAIMDDESGVTRDRHYGEAEWCGKFFTVIDTGGYV 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILI 136 D + IR I AD++ +VDS V +H L +E A + R +IL+ Sbjct: 62 TGSDDIFEGQIRDQVDIAIDEADVILFLVDSD----VGVHHLDQEFANKIRRSKKPVILV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 NK D K RL AE + + + + +S+ G G ++L+ + S Sbjct: 118 ANKSDNNK--RLHMSAEFYE--LGMGEVWPISSQNGTGTGELLDEVIS 161 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 65/130 (50%), Gaps = 3/130 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G NAGKS+ VN +G SIVT + TTR + + + +F+DT GI Sbjct: 178 IAVLGRPNAGKSSYVNALLGTNRSIVTDQAGTTRDSITSHYNVFGKEFIFVDTAGIRKKS 237 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ I S ++ +D+ +++D+ R ++ +++ +++++NK D Sbjct: 238 RIKEDVEYYSILRSVKALEESDVCVIMIDAERGIESQDMNIIWMAHNNKKGIVILVNKWD 297 Query: 142 CVKPERLLEQ 151 ++ + Q Sbjct: 298 LIEKDSKTAQ 307 >gi|330957531|gb|EGH57791.1| GTP-binding protein Der [Pseudomonas syringae pv. maculicola str. ES4326] Length = 489 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 197 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 256 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 257 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 314 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 315 WDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSA 367 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M + S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAKQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L S P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALSEFP 163 >gi|322831770|ref|YP_004211797.1| ribosome-associated GTPase EngA [Rahnella sp. Y9602] gi|321166971|gb|ADW72670.1| ribosome-associated GTPase EngA [Rahnella sp. Y9602] Length = 494 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + ++ + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTKTRDALVADFPGLTRDRKYGRAEIEGNEFIIVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGL 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 209 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 269 KVTETVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 328 Query: 142 CVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN-----YLCST 185 + E ++ +Q ++ V + +SA G G ++ Y C+T Sbjct: 329 GMSEEARAQVKDQLDLRLGFVDFARIHFISALHGSGVGNLFESVNEAYTCAT 380 >gi|312134636|ref|YP_004001974.1| ribosome-associated gtpase enga [Caldicellulosiruptor owensensis OL] gi|311774687|gb|ADQ04174.1| ribosome-associated GTPase EngA [Caldicellulosiruptor owensensis OL] Length = 440 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 15/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR +G + +IV TR + G + +DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPY 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILN 138 ++D K M R + + +D++ +VD K + D +E+A R+S+ ++L +N Sbjct: 64 SEDIILKQMRRQAQFAVDMSDVIIFIVDG----KTGLTDADREVANMLRASKKPIVLAVN 119 Query: 139 KIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID + E ++ E E+ + +SA G G DVL+ + + L Sbjct: 120 KIDNISQEPMIYEFYELG-----LSDPIAMSAEHGTGVGDVLDAVVNYL 163 Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 10/157 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+LVN +G + IV+ TTR + + I +DT G+ Sbjct: 178 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEGIPITLIDTAGLRRKS 237 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + M+R + I+ +DI +++D + + + I+ +NK Sbjct: 238 KIYDNVERYSMLR-TLQAIERSDICIILLDGTEGVSEQDAKIAGYAYEAGKGCIIAVNKW 296 Query: 141 DCV-KPERLLEQ--AEIANKLVFIE--KTFMVSATKG 172 D V K E+ ++ +I KL F++ +SA G Sbjct: 297 DAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTG 333 >gi|304414053|ref|ZP_07395421.1| GTP-binding protein [Candidatus Regiella insecticola LSR1] gi|304283267|gb|EFL91663.1| GTP-binding protein [Candidatus Regiella insecticola LSR1] Length = 491 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + IV TTR + ++ E Q + +DT G+ Sbjct: 207 LAIVGRPNVGKSTLTNRILGEERVIVYDLPGTTRDSIYIPMTRNERQYILIDTAGVRKRG 266 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ +++V LV+D+ + LL I L++++NK D Sbjct: 267 KVTQTVEKFSVIKTLKAIEDSNVVLLVIDAQDGISDQDLSLLGFILNSGRSLVIVINKWD 326 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLC 183 ++ E R + E+ +L FI+ + +SA + G ++ +C Sbjct: 327 GIQAEDRQRVKNELDLRLNFIDFARIHFISALRVSGVGNLFKSVC 371 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 11/170 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL N + ++V+ TR G + + + +DT G+ Sbjct: 4 VVALVGRPNVGKSTLFNHLTRTRSALVSDFPGLTRDRQYGRAEFESHEFIVIDTGGVDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + LM + I+ ADIV +VD + ++ + + R L++NK D + Sbjct: 64 EQGVETLMASQALLAIEEADIVLFIVDGRAGMLPADQEITQHLRNRQKSTFLLVNKTDGI 123 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + + IA+ + + + ++A+ G G +L + +AP++ Sbjct: 124 NSD-----SAIADFYSLGLGEVYAIAASHGRGVAQLLERV-----MAPFI 163 >gi|291615448|ref|YP_003525605.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1] gi|291585560|gb|ADE13218.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 1/94 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V LVGA NAGKS+L+NRF G ++++V+ TTR +R + + + +DT G Sbjct: 214 REGAQVVLVGAPNAGKSSLLNRFAGEEIALVSEIPGTTRDSIRQALQVRGVPLHLIDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 + D+ ++ I + + AD+V +++D R Sbjct: 274 LRETNDAVEQMGIARTKLALTRADVVLVLLDESR 307 >gi|194337753|ref|YP_002019547.1| tRNA modification GTPase TrmE [Pelodictyon phaeoclathratiforme BU-1] gi|194310230|gb|ACF44930.1| tRNA modification GTPase TrmE [Pelodictyon phaeoclathratiforme BU-1] Length = 473 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 8/163 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKSTL+N +G + SIV+H TTR + +++ DT G+ + Sbjct: 235 IAGLPNAGKSTLLNVLLGEERSIVSHMPGTTRDYIEECFLYEKTMFRLTDTAGLREGGEE 294 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNKID-CV 143 IR S+ I AD++ ++D E ++ L++++ +R+S R+I+ NKID Sbjct: 295 VEHEGIRRSFKKISEADLLVYLLDISLESYLDEVPLIRDLLERNSNARMIVAANKIDLAT 354 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E L++ A + +SA KG G + L L ST+ Sbjct: 355 GSEERLQKLRAATGC----EVCALSAAKGEGL-EALKRLMSTM 392 >gi|110590297|pdb|2GJ8|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And K+ gi|110590298|pdb|2GJ8|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And K+ gi|110590299|pdb|2GJ8|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And K+ gi|110590300|pdb|2GJ8|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And K+ Length = 172 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 10/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREAS 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W I+ AD V VD V+ ++ E IA+ ++L ++ NK D Sbjct: 67 DEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L +E+ N I +SA G G D + N+L Sbjct: 127 ITG--ETLGXSEV-NGHALIR----LSARTGEGVDVLRNHL 160 >gi|148656272|ref|YP_001276477.1| GTP-binding protein EngA [Roseiflexus sp. RS-1] gi|148568382|gb|ABQ90527.1| small GTP-binding protein [Roseiflexus sp. RS-1] Length = 493 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 15/175 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR +G + +IV TTR + G +DT G+ Sbjct: 4 IVALVGRPNVGKSTLFNRLIGERRAIVEDIPGTTRDRLYGDTEWNGRVFTVVDTAGLLLD 63 Query: 84 KDSYHKLMIRLSWS---------TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-L 133 +D +L + I+ AD + +VDS RE + E+ +R+S+ + Sbjct: 64 EDDLTPGTPQLEIARRVREQAEIAIEEADAIIFIVDS-REGLTAADAAVAEVLRRASKPV 122 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +L NK D ER L+ E + + + +SA G G DVL+ + LP+ Sbjct: 123 VLAANKAD--NRERALDAVEF--YALNLGEPIPMSAYHGIGVGDVLDRVTDVLPI 173 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+L+NR +G + S+V+ TTR + V + + +DT GI Sbjct: 185 IAIVGRPNVGKSSLLNRLIGQERSVVSDVPGTTRDSIDTPVEIDGIKALLIDTAGIRRRG 244 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + + I+ AD+ L++D+ + + I + + +++NK D Sbjct: 245 KIERGLERYSVMRALRAIERADVALLLIDATEGVTAQDTHIAGMILESLKGVAILVNKWD 304 Query: 142 CVKPERLLEQA-----EIANKLVFIEKTFMVSATKGHGCDDVL 179 V + A A K + +SA G D VL Sbjct: 305 LVVKDNTTFDAFSRHVREAFKFISYAPLLFISAKTGQRVDKVL 347 >gi|70732274|ref|YP_262030.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf-5] gi|123653208|sp|Q4K6V3|DER_PSEF5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|68346573|gb|AAY94179.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf-5] Length = 490 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 10/173 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + + + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 D ++P ER + E+ +L F++ +SA G G ++ + ++ A Sbjct: 316 WDGMQPSERDYVKTELQRRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSA 368 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRTYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ +I NK+D + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDAKAGFTAADQMIGEHLRKRNKTSYVIANKVDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +AE A + + ++ G G +L S P Sbjct: 124 DPD--MARAEFAP--LGMGDAIPIAGAHGRGITQMLEIALSEFP 163 >gi|75908210|ref|YP_322506.1| tRNA modification GTPase TrmE [Anabaena variabilis ATCC 29413] gi|123758831|sp|Q3MBM5|MNME_ANAVT RecName: Full=tRNA modification GTPase mnmE gi|75701935|gb|ABA21611.1| tRNA modification GTPase trmE [Anabaena variabilis ATCC 29413] Length = 463 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 17/131 (12%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------ 73 R+G VA+VG N GKS+L+N + + +IVT TTR +V ESQ+V Sbjct: 223 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV-------ESQLVVGGIPV 275 Query: 74 -FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 LDT GI D K+ + S AD+V L +D+ ++ +++ R Sbjct: 276 QVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRP-- 333 Query: 133 LILILNKIDCV 143 LIL++NKID V Sbjct: 334 LILVMNKIDLV 344 >gi|303255573|ref|ZP_07341624.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455] gi|303260461|ref|ZP_07346429.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293] gi|303262818|ref|ZP_07348755.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292] gi|303265288|ref|ZP_07351198.1| tRNA modification GTPase [Streptococcus pneumoniae BS397] gi|303266495|ref|ZP_07352382.1| tRNA modification GTPase [Streptococcus pneumoniae BS457] gi|303268386|ref|ZP_07354182.1| tRNA modification GTPase [Streptococcus pneumoniae BS458] gi|301801851|emb|CBW34569.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV200] gi|302597429|gb|EFL64524.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455] gi|302636016|gb|EFL66514.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292] gi|302638373|gb|EFL68840.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293] gi|302642107|gb|EFL72458.1| tRNA modification GTPase [Streptococcus pneumoniae BS458] gi|302643946|gb|EFL74206.1| tRNA modification GTPase [Streptococcus pneumoniae BS457] gi|302645153|gb|EFL75390.1| tRNA modification GTPase [Streptococcus pneumoniae BS397] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|237747715|ref|ZP_04578195.1| HflX GTP-binding protein [Oxalobacter formigenes OXCC13] gi|229379077|gb|EEO29168.1| HflX GTP-binding protein [Oxalobacter formigenes OXCC13] Length = 379 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 17/161 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A + T + R I E+ +V DT G Sbjct: 192 SVSLVGYTNAGKSTLFNAMTKAGTYVADQLFATLDTTSRRIYIEETGNVVISDTVGFV-- 249 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK------VNIHDLLKEIAKRSSRLIL 135 ++ H+L+ R + HAD++ VVD+ ++ VN+ +LKEI + +L Sbjct: 250 RELPHQLVAAFRATLEETIHADLLLHVVDAANPMRKEQIEQVNL--VLKEIGAENVPQLL 307 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + NKID E LE+ E I + F VSA G G D Sbjct: 308 VWNKIDLAGLEPGLERDEYGR----ISRVF-VSAGTGAGLD 343 >gi|254977337|ref|ZP_05273809.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-66c26] gi|255094668|ref|ZP_05324146.1| tRNA modification GTPase TrmE [Clostridium difficile CIP 107932] gi|255316421|ref|ZP_05358004.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-76w55] gi|255519081|ref|ZP_05386757.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-97b34] gi|255652264|ref|ZP_05399166.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-37x79] gi|306521979|ref|ZP_07408326.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-32g58] Length = 459 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 6/137 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N +G +IVT TTR ++ V+ K + +DT G Sbjct: 219 REGLKTVIVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S + AD++ +V+D+ R+L ++L+++ + + I++LNK Sbjct: 279 IRDTDDIVEKIGVEKSKESFTSADLIVMVLDASRKLSEEDIEILEKL--KDKQTIVLLNK 336 Query: 140 IDC---VKPERLLEQAE 153 D ++ E++L+ E Sbjct: 337 NDLKQEIEEEKILKYVE 353 >gi|297559956|ref|YP_003678930.1| ribosome-associated GTPase EngA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844404|gb|ADH66424.1| ribosome-associated GTPase EngA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 478 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 14/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNR +G + ++V TR V + ++ +DT G + Sbjct: 24 VVAVVGRPNVGKSSLVNRIIGRREAVVEDVPGVTRDRVAYDAEWQNTRFTLVDTGGWETS 83 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILNK 139 ++ R + + AD++ VVD+ V + D + + RS++ ++L NK Sbjct: 84 VSGLAAMVARQAEYAAQTADVILFVVDA----TVGVTDADAAVTRVLRSTKRPVVLAANK 139 Query: 140 IDCVKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +D +++A+ + + + + F +SA G G D+L+ L + P P Sbjct: 140 VDGS-----MQEADALDLWQLGVGQPFPISALHGRGTGDLLDALVAEFPEQP 186 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 5/144 (3%) Query: 9 FNEHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 F E +D+ G +AL+G N GKS+L+NR G +V TTR V ++ Sbjct: 182 FPEQPLGEEDDGEDGPPRIALLGRPNVGKSSLLNRLAGEDRVVVDAVAGTTRDAVDELIE 241 Query: 67 EKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 F+DT GI F A + + ++ A+ +++D L ++ Sbjct: 242 LGGKTWKFIDTAGIRRRFRALQGADYYATMRTGTALERAEAAVVLMDVSEPLAEQDIRVV 301 Query: 124 KEIAKRSSRLILILNKIDCVKPER 147 +++ + L+L NK D + ER Sbjct: 302 EQVVEAGRGLVLAFNKWDILDEER 325 >gi|193214522|ref|YP_001995721.1| tRNA modification GTPase TrmE [Chloroherpeton thalassium ATCC 35110] gi|193087999|gb|ACF13274.1| tRNA modification GTPase TrmE [Chloroherpeton thalassium ATCC 35110] Length = 483 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 A+VG NAGKSTL+N +G + +IV+H TTR + +DT G+ + Sbjct: 242 ATAIVGRPNAGKSTLLNALLGKERAIVSHVPGTTRDYIEESFVLDGVPFRLIDTAGLRLS 301 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRLILILNKID 141 D+ IR S+ I AD+V V D+ ++ + + K+S ++ ++ NKID Sbjct: 302 DDALESEGIRRSYEKITEADLVIFVHDATEKITEAERTEILALRKKSAHAKFFIVANKID 361 Query: 142 CV 143 CV Sbjct: 362 CV 363 >gi|325687543|gb|EGD29564.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK72] gi|327474426|gb|EGF19832.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK408] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI+K S+R++L LNK Sbjct: 281 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISKDSNRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|312174334|emb|CBX82587.1| tRNA modification GTPase trmE [Erwinia amylovora ATCC BAA-2158] Length = 474 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 17/179 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 221 DAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIQ 280 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ A D ++ I +W I+ AD V +VD + ++ + Sbjct: 281 IDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADHVLFMVDGTTTDATDPAEIWPDF 340 Query: 127 AKRSSRLI---LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + ++ NK D R E +E+ L+ +SA G G +++ N+L Sbjct: 341 IARLPETLPVTVVRNKADITGEIR--EISEVNGHLL-----IRLSARTGEGIENLRNHL 392 >gi|225856671|ref|YP_002738182.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031] gi|225725175|gb|ACO21027.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|167560998|ref|ZP_02353914.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis EO147] Length = 467 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 20/206 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ L Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDARSRLG 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKG 172 + + IA R ++ +LNK D P + E +SA +G Sbjct: 321 ADD----QAIAARFPAGVPVVRVLNKTDLTDVPASVARGGGEEGGAEVCE--VRLSAKRG 374 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 375 DGIDLLRGEL---LRIAGWQAGAESV 397 >gi|148988468|ref|ZP_01819915.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73] gi|147926149|gb|EDK77223.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|149003876|ref|ZP_01828699.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69] gi|237650073|ref|ZP_04524325.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI 1974] gi|237822158|ref|ZP_04598003.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI 1974M2] gi|147758106|gb|EDK65110.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69] gi|301799983|emb|CBW32573.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae OXC141] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|116516848|ref|YP_816380.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39] gi|161410748|ref|NP_358514.2| tRNA modification GTPase TrmE [Streptococcus pneumoniae R6] gi|168491911|ref|ZP_02716054.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04] gi|32171825|sp|Q8DPZ8|MNME_STRR6 RecName: Full=tRNA modification GTPase mnmE gi|122278734|sp|Q04KR8|MNME_STRP2 RecName: Full=tRNA modification GTPase mnmE gi|116077424|gb|ABJ55144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39] gi|183573804|gb|EDT94332.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|329960747|ref|ZP_08299071.1| tRNA modification GTPase TrmE [Bacteroides fluxus YIT 12057] gi|328532462|gb|EGF59260.1| tRNA modification GTPase TrmE [Bacteroides fluxus YIT 12057] Length = 461 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 4/136 (2%) Query: 12 HKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 H V + +SG VA++G TNAGKSTL+N + + +IV+ TTR ++ + Sbjct: 210 HSFSVGNAIKSGVPVAIIGETNAGKSTLLNVLLNEEKAIVSDIHGTTRDVIEDTANIGGI 269 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-- 128 F+DT GI D+ L I ++ + A+IV ++D+ + I L ++I Sbjct: 270 TFRFIDTAGIRETSDAIENLGIERTFQKLDQAEIVLWMIDA-TDASAQISQLSEQILPHC 328 Query: 129 RSSRLILILNKIDCVK 144 +LIL+LNK D V+ Sbjct: 329 EGKQLILVLNKADLVE 344 >gi|325955496|ref|YP_004239156.1| tRNA modification GTPase mnmE [Weeksella virosa DSM 16922] gi|323438114|gb|ADX68578.1| tRNA modification GTPase mnmE [Weeksella virosa DSM 16922] Length = 463 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 64/128 (50%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VGA NAGKSTL+N + + +IV+ TTR + ++ F+DT GI A Sbjct: 225 VAIVGAPNAGKSTLLNALLNEERAIVSDVEGTTRDTIEEVLYINGIGFRFIDTAGIREAG 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I ++ I A IV + DS+ I + L+ + + + I NKID Sbjct: 285 DKIEQIGIEKTFEKIDKASIVLYLYDSNIMADNQIANQLEALISKGKIVFNIANKIDIES 344 Query: 145 PERLLEQA 152 ++ QA Sbjct: 345 DRDVIPQA 352 >gi|242241426|ref|YP_002989607.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703] gi|242133483|gb|ACS87785.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703] Length = 453 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 18/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G +IVT TTR ++R + Sbjct: 201 DAVRAQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ A D ++ I +W I+ AD V +VD V + E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVEPSAIWPEF 320 Query: 127 AKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + +I NK D +EQ N I +SA G G D + ++L Sbjct: 321 MARLPATLPITVIRNKADTTGEPLGMEQ----NTHTLIR----LSARTGAGVDLLRDHLK 372 Query: 184 STL 186 ++ Sbjct: 373 QSM 375 >gi|190171194|gb|ACE63667.1| ThdF [Enterobacter cowanii] Length = 439 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ D+ + Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCV 143 IA+ ++L ++ NK D Sbjct: 313 IARLPAKLPITVVRNKADVT 332 >gi|319936667|ref|ZP_08011080.1| tRNA modification GTPase mnmE [Coprobacillus sp. 29_1] gi|319808224|gb|EFW04789.1| tRNA modification GTPase mnmE [Coprobacillus sp. 29_1] Length = 444 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + +IVT TTR IV G + + +DT GI D Sbjct: 222 IIGKPNVGKSSLLNALLNEDKAIVTDIAGTTRDIVEGTIRLDNIILNMIDTAGIRETNDI 281 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + + S I AD+V LV+DS EL ++L+ E+++ ++R+I++ K +K E Sbjct: 282 VENIGVNKSKELIHKADLVLLVLDSSSELTKEDYELI-ELSQDTNRIIVMNKKDQGIKYE 340 >gi|148998838|ref|ZP_01826274.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70] gi|168576255|ref|ZP_02722149.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016] gi|307067807|ref|YP_003876773.1| putative GTPase [Streptococcus pneumoniae AP200] gi|147755265|gb|EDK62316.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70] gi|183577997|gb|EDT98525.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016] gi|306409344|gb|ADM84771.1| Predicted GTPase [Streptococcus pneumoniae AP200] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|119946045|ref|YP_943725.1| GTP-binding protein, HSR1-related [Psychromonas ingrahamii 37] gi|119864649|gb|ABM04126.1| GTP-binding protein, HSR1-related [Psychromonas ingrahamii 37] Length = 443 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 13/138 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CVALVG TNAGKS+L+ ++V + T + VR + + +I+ DT G Sbjct: 223 CVALVGYTNAGKSSLMRALTDSEVLVEDKLFATLDTTVRTLQPPTQPRILISDTVGFI-- 280 Query: 84 KDSYHKLMIRL--SWSTIKHADIVCLVVDSHRE-----LKVNIHDLLKEIAKRSSRLILI 136 K H L+ + K AD++ VVD+ E L V H +L E+ +S +L+ Sbjct: 281 KKLPHDLVASFHSTLEEAKDADLLLYVVDASDENFTAQLAVVDH-VLAELNVDASNRLLL 339 Query: 137 LNKIDCVKPER---LLEQ 151 LNK+DC+ ER LLEQ Sbjct: 340 LNKVDCISEERQLALLEQ 357 >gi|293610300|ref|ZP_06692601.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827532|gb|EFF85896.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 469 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + + +DT GI + Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGES 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+AT G G +L + + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPLQVAATHGRGVQQMLEDVLAEVP 163 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 11/177 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTLVNR +G + + TTR + + + +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKG 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K I + +K A +V +VVD+ + L+ + +++ +NK D Sbjct: 239 KVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWD 298 Query: 142 CVKP-ERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL-----NYLCSTLPLAP 190 + +R + ++ + FI K ++SA G G D+ Y + L ++P Sbjct: 299 NMSEYDRKQCKLDVERRFDFIPWAKIHLISALHGTGVGDLYPSIHRAYESANLKVSP 355 >gi|189485147|ref|YP_001956088.1| GTP-binding protein EngA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287106|dbj|BAG13627.1| GTP-binding protein EngA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 441 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 12/166 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR +G K +I+ TTR VS ++ + DT G Sbjct: 7 VAIVGRPNVGKSALFNRLIGRKKAIIHETPGTTRDRNDHEVSWRDKNFIATDTAGWSTDI 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 ++ K M R ++ +DIV VVD + ++I + + IL++NKID Sbjct: 67 SAFSKDMSRQLDIAVEKSDIVLFVVDGKTGAHPTDVQIAQQIRLKRKKTILVVNKIDT-- 124 Query: 145 PERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLNYLCSTL 186 QAE F E F VSA G D+L+ + + Sbjct: 125 ------QAEEIKGYEFYELGFDDVIFVSANHGRSVHDLLDKIWENI 164 Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 15/139 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 + LVG N GKS+ +N + SIV TTR + + + + DT G+ Sbjct: 179 IILVGKPNVGKSSFINTVAKEERSIVHDTPGTTRDSLTARIQSDGKEYILTDTAGLHRGN 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 KD L + I+ AD+ L+ D+ + E +V I LL E + +I+ +N Sbjct: 239 KTKDGMEYLSNLSTGHAIEDADVAVLIADASQGIGETEVKIARLLLE---KKKPVIVTVN 295 Query: 139 KIDCVKPERLLEQAEIANK 157 K D L+E+ E A K Sbjct: 296 KWD------LIEEKEEAAK 308 >gi|168487704|ref|ZP_02712212.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00] gi|169834150|ref|YP_001694460.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Hungary19A-6] gi|225861000|ref|YP_002742509.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Taiwan19F-14] gi|298230463|ref|ZP_06964144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255333|ref|ZP_06978919.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502963|ref|YP_003724903.1| tRNA modification GTP-binding protein TrmE [Streptococcus pneumoniae TCH8431/19A] gi|205415808|sp|B1IBH5|MNME_STRPI RecName: Full=tRNA modification GTPase mnmE gi|168996652|gb|ACA37264.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Hungary19A-6] gi|183569534|gb|EDT90062.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00] gi|225727603|gb|ACO23454.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Taiwan19F-14] gi|298238558|gb|ADI69689.1| tRNA modification GTP-binding protein TrmE [Streptococcus pneumoniae TCH8431/19A] gi|327389399|gb|EGE87744.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04375] gi|332200613|gb|EGJ14685.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41317] gi|332201488|gb|EGJ15558.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47368] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|254827379|ref|ZP_05232066.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165] gi|258599757|gb|EEW13082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|194398466|ref|YP_002037652.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54] gi|194358133|gb|ACF56581.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|125718082|ref|YP_001035215.1| tRNA modification GTPase TrmE [Streptococcus sanguinis SK36] gi|166234828|sp|A3CNB0|MNME_STRSV RecName: Full=tRNA modification GTPase mnmE gi|125497999|gb|ABN44665.1| tRNA modification GTPase, possibly iron-binding, putative [Streptococcus sanguinis SK36] Length = 457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI+K S+R++L LNK Sbjct: 281 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISKDSNRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|90194130|gb|ABD92626.1| ThdF [Mannheimia varigena] Length = 436 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 5/135 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILI 136 + +A D ++ I +W I AD V L++DS + + + +AK + + +I Sbjct: 263 LRDASDEVERIGIARAWDEIAQADHVLLMIDSTEQTADQFRNEWADFLAKLPANMPVTVI 322 Query: 137 LNKIDCV-KPERLLE 150 NK+D +PE L++ Sbjct: 323 RNKVDLSGEPEGLIQ 337 >gi|253573863|ref|ZP_04851205.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786 str. D14] gi|251846340|gb|EES74346.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786 str. D14] Length = 459 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N +IVT TTR ++ V+ + LDT G Sbjct: 219 REGITTAIVGRPNVGKSSLMNALARENKAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + + AD++ LV++S L + L++++ RS+ I++LNK Sbjct: 279 IRETMDVVEQIGVERSKAAVSEADLILLVLNSAEALHEDEIALMEQLKGRST--IVLLNK 336 Query: 140 IDCVKPERL 148 ID P++L Sbjct: 337 IDL--PQQL 343 >gi|168483087|ref|ZP_02708039.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00] gi|172043445|gb|EDT51491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00] Length = 457 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K AD+V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|167568262|ref|ZP_02361136.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis C6786] Length = 467 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 20/206 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ L Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDARSRLG 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKG 172 + + IA R ++ +LNK D P + E +SA +G Sbjct: 321 ADD----QAIAARFPAGVPVVRVLNKTDLTDVPASVARGGGGEGGAEVCE--VRLSAKRG 374 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 375 DGIDLLRGEL---LRIAGWQAGAESV 397 >gi|260655716|ref|ZP_05861189.1| tRNA modification GTPase TrmE [Jonquetella anthropi E3_33 E1] gi|260629633|gb|EEX47827.1| tRNA modification GTPase TrmE [Jonquetella anthropi E3_33 E1] Length = 454 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 9/162 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 VALVG NAGKS+L+N + SIVT TTR IV +++ + + +DT G+ + Sbjct: 220 VALVGRPNAGKSSLLNALLKESRSIVTSVPGTTRDIVEAVLTYRGVPLRLVDTAGMGEPS 279 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D L + + +K AD+ ++D R L+ + A S +L+++K D Sbjct: 280 HDEVELLGVERAKKAMKSADVRVWIIDGSRPADDLDMKLIADAAAGSH--VLVISKSDL- 336 Query: 144 KPERLLEQAEIANKLVFIEKTFMV-SATKGHGCDDVLNYLCS 184 ER ++ E+A + F + +V SA KG G D++ + S Sbjct: 337 --ERKFDEKELAEQ--FPDSPLVVLSAKKGAGLDELKEAIVS 374 >gi|57239243|ref|YP_180379.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Welgevonden] gi|58579205|ref|YP_197417.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Welgevonden] gi|57161322|emb|CAH58245.1| putative GTP binding protein EngA [Ehrlichia ruminantium str. Welgevonden] gi|58417831|emb|CAI27035.1| Probable GTP-binding protein engA [Ehrlichia ruminantium str. Welgevonden] Length = 439 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +++VG NAGKST VNR VG IV+ + TTR V ++ + + +DT G+ Sbjct: 176 ISIVGRPNAGKSTFVNRLVGEDRMIVSSEPGTTRDAVDIEYEYQDQKFILIDTAGMRKKA 235 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + S +I +DI+ L++DS ++ + + + ++ +I+ LNK D Sbjct: 236 KITENIEVTSVYKSIESINRSDIIILMIDSVCGMEQQDLSIAELVIQKGKAIIIALNKWD 295 Query: 142 CVKPER---LLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + E LL NKL F +SA K C+ VL Sbjct: 296 VISKEHRLGLLRDIRNYNKLSFDVPIIEISALKNINCNMVL 336 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 6/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST+ NR V + +IV++ TR G + +DT G+ + + Sbjct: 4 VAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGV-DYR 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 L++ I+ D++ VVD+ E + + K + K + + +ILI NK + Sbjct: 63 IKLSVLILDQVKLAIEACDVIFFVVDARVERDIKNIEFAKYLRKNTHKPIILIANKCESR 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K ++ E N FI + +SA G D+ + L +P Sbjct: 123 KKCSEVDYLEYFN---FIGPIY-ISAEHNLGMVDLYDALIPFIP 162 >gi|46909000|ref|YP_015389.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b str. F2365] gi|47093270|ref|ZP_00231041.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b H7858] gi|290891992|ref|ZP_06554989.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071] gi|67461967|sp|Q71VV0|MNME_LISMF RecName: Full=tRNA modification GTPase mnmE gi|46882273|gb|AAT05566.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b str. F2365] gi|47018344|gb|EAL09106.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b H7858] gi|290558586|gb|EFD92103.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071] Length = 457 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|295697832|ref|YP_003591070.1| tRNA modification GTPase TrmE [Bacillus tusciae DSM 2912] gi|295413434|gb|ADG07926.1| tRNA modification GTPase TrmE [Bacillus tusciae DSM 2912] Length = 461 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+L+N G + +IVT TTR +V + + LDT GI +D Sbjct: 227 AIVGRPNVGKSSLLNALAGRERAIVTAIPGTTRDVVDEWIHVRGVAFQILDTAGIRTTED 286 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 ++ + S + AD+V V+D L+ +LL I R ++++NKID P Sbjct: 287 EVERIGVERSLKWVAEADLVLCVLDGSSPLEKEDLELLDRIKDRP--FLVVVNKIDL--P 342 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 RL + KL + VSA G G ++ + + + Sbjct: 343 GRLAGDGRL-EKLPQ-HRMVRVSARTGDGVQELADRMAQVV 381 >gi|254851886|ref|ZP_05241234.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503] gi|254992368|ref|ZP_05274558.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-064] gi|300763431|ref|ZP_07073429.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017] gi|258605181|gb|EEW17789.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503] gi|300515708|gb|EFK42757.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017] Length = 457 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|116874162|ref|YP_850943.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458786|sp|A0AMD2|MNME_LISW6 RecName: Full=tRNA modification GTPase mnmE gi|116743040|emb|CAK22164.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str. SLCC5334] Length = 457 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|327490071|gb|EGF21859.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1058] Length = 436 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + S + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + EI + + F VS+ G G DVL+ + LP V + D I Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVVENPDMI 175 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|269926863|ref|YP_003323486.1| small GTP-binding protein [Thermobaculum terrenum ATCC BAA-798] gi|269790523|gb|ACZ42664.1| small GTP-binding protein [Thermobaculum terrenum ATCC BAA-798] Length = 448 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 17/167 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST NR +G + +IV + TTR + G VS + +DT G+ + Sbjct: 6 IVAIVGRPNVGKSTFFNRLLGERAAIVQDEPGTTRDRLYGEVSWRGRTFTIVDTGGLETS 65 Query: 84 KDSYH------KLMIR-LSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRL 133 DS + M+R + I+ AD++ ++D I DLL+ K + Sbjct: 66 VDSSSDEPDPIRRMVREQAEQAIREADLIVFMIDVKTGPTPSDYEIADLLRRTNKPT--- 122 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 IL +NK D P+R E E + + + VSA G G +L+ Sbjct: 123 ILAVNKADS--PQREYEAVEFYS--LGMGDPIPVSAYHGMGITPLLD 165 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKS L+N +G + +IV+ TTR V + + +IV +DT GI Sbjct: 188 IAIVGRPNVGKSRLLNAILGQERAIVSDVPGTTRDPVDTEIQWGDQRIVLIDTAGIRRRG 247 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + + I +D+V L++D+ L + + + L+L++NK D Sbjct: 248 KVESGIEQYSVFRTLRAIGRSDVVLLLIDAQEGLTAQDEHIAGYVLEEYKGLVLVVNKWD 307 Query: 142 CVK 144 V+ Sbjct: 308 LVE 310 >gi|217965982|ref|YP_002351660.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23] gi|226225361|ref|YP_002759468.1| GTPase [Listeria monocytogenes Clip81459] gi|254824824|ref|ZP_05229825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194] gi|254930915|ref|ZP_05264274.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262] gi|284800302|ref|YP_003412167.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578] gi|284993487|ref|YP_003415255.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923] gi|217335252|gb|ACK41046.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23] gi|225877823|emb|CAS06538.1| Putative GTPase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|284055864|gb|ADB66805.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578] gi|284058954|gb|ADB69893.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923] gi|293582461|gb|EFF94493.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262] gi|293594064|gb|EFG01825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194] gi|307572401|emb|CAR85580.1| tRNA modification GTPase [Listeria monocytogenes L99] gi|328469044|gb|EGF39998.1| tRNA modification GTPase TrmE [Listeria monocytogenes 220] gi|332313241|gb|EGJ26336.1| tRNA modification GTPase mnmE [Listeria monocytogenes str. Scott A] Length = 457 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|95930679|ref|ZP_01313413.1| Small GTP-binding protein domain [Desulfuromonas acetoxidans DSM 684] gi|95133331|gb|EAT14996.1| Small GTP-binding protein domain [Desulfuromonas acetoxidans DSM 684] Length = 436 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR +G + +IV TR V+ + +DT G Sbjct: 3 VVAIVGRPNVGKSTLFNRILGERKAIVEDYPGVTRDRNYADVTRYDKPFTLIDTGGFEPV 62 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + +R S I+ AD++ V+D L + ++ + + + ++ ++NK+D Sbjct: 63 SEVRMLVQMREQSQLAIEEADVILFVMDGRDGLTPSDEEVAEMLRRVDKPVLFVVNKVDG 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E EQA L IE F+ SA G G +++ + LP Sbjct: 123 DKQE---EQAAEFYSL-GIEHFFVTSAEHGRGMGELMAAILDELP 163 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V+D+S +A++G N GKS+LVN+ +G + + TTR V + + V + Sbjct: 168 VEDDSAEVRLAVIGRPNVGKSSLVNKLLGYERVVANPTAGTTRDSVDTPFTYNNQRYVLI 227 Query: 76 DTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI KL + + + A +V +V+D+ + + R Sbjct: 228 DTAGIRRKGKVSQKLEKYSVVQALKGMDRAHVVMVVIDAEEGITEQDLTIAGYAYDRGRA 287 Query: 133 LILILNKIDCV 143 ++L++NK D + Sbjct: 288 VVLVVNKWDTL 298 >gi|210614312|ref|ZP_03290160.1| hypothetical protein CLONEX_02374 [Clostridium nexile DSM 1787] gi|210150728|gb|EEA81737.1| hypothetical protein CLONEX_02374 [Clostridium nexile DSM 1787] Length = 457 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N VG +IVT TTR ++ + + + +DT GI N +D Sbjct: 225 IVGKPNAGKSSLLNVLVGEDRAIVTDIEGTTRDVLEESIQLQGISLNIMDTAGIRNTEDI 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + AD++ VVD+ R L N ++++ I + + +++LNK D Sbjct: 285 VEKIGVDKAKEHANEADLIIYVVDASRNLDENDMEIIQMIQDK--KAVILLNKSDL 338 >gi|257437744|ref|ZP_05613499.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii A2-165] gi|257199759|gb|EEU98043.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii A2-165] Length = 456 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKSTL+N G +IVT TTR +V V + ++ DT G+ +D Sbjct: 225 AIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVRLGDIRLNLFDTAGLRETED 284 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 + IR SW + A ++ V D L L + A R + I ++NK+D KP Sbjct: 285 AIEAEGIRRSWKKLDEAGLILAVFDGSEPLIREDLALAQRCAGRPA--IALVNKVD--KP 340 >gi|229099911|ref|ZP_04230834.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-29] gi|229118974|ref|ZP_04248319.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-3] gi|228664499|gb|EEL19995.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-3] gi|228683526|gb|EEL37481.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-29] Length = 458 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLIVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 IDC---VKPERLLEQA 152 D + ER+ E A Sbjct: 336 TDLPQGIDMERVAELA 351 >gi|229153643|ref|ZP_04281819.1| tRNA modification GTPase mnmE [Bacillus cereus m1550] gi|228629829|gb|EEK86482.1| tRNA modification GTPase mnmE [Bacillus cereus m1550] Length = 458 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDIVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER+ E A Sbjct: 336 TDLPQAIDMERVTELA 351 >gi|220935213|ref|YP_002514112.1| GTP-binding protein EngA [Thioalkalivibrio sp. HL-EbGR7] gi|254783176|sp|B8GTN1|DER_THISH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219996523|gb|ACL73125.1| GTP-binding protein EngA [Thioalkalivibrio sp. HL-EbGR7] Length = 464 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V TR G + +DT G+ Sbjct: 4 VIALVGRPNVGKSTLFNQLTRSRDALVADFPGLTRDRQYGPGRVGGFPYMVVDTGGLSGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ LM R + I +D+V +VD L + + + + +++L++NK D V Sbjct: 64 AETLDNLMARQTQQAIDESDVVLFLVDGREGLTAADQAIARSLRTQGKKVLLVVNKTDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +QA + ++AT G G ++N + + LP Sbjct: 124 D----ADQAMAEFHALGFGAPIPIAATHGRGVLGLMNAVHALLP 163 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 8/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG NAGKSTL+NR +G + + T TTR + Q +DT G+ Sbjct: 180 IAFVGRPNAGKSTLINRILGEERVVATEIPGTTRDSIFIPFERDGQQYTLIDTAGVRRRS 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I A +V +V+D+ + LL + L++ +NK D Sbjct: 240 RVHEAIEKFSVVKTLQAIDAAHVVVMVLDAREGISEQDAHLLGVVLDAGRALVVAINKWD 299 Query: 142 CVKP-ERLLEQAEIANKLVFI---EKTFMVSATKGHGCDDVLNYL 182 + P +R + E+ KL F+ EK F +SA G G D+ ++ Sbjct: 300 GLDPDQRDRIRHELDLKLPFLDFAEKRF-ISALHGTGVGDLFAHV 343 >gi|153811977|ref|ZP_01964645.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174] gi|149831876|gb|EDM86962.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174] Length = 486 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG +IVT TTR I+ +S + +DT GI +D Sbjct: 254 ILGKPNAGKSSLLNFLVGEDRAIVTEIAGTTRDILEEYISLNGITLRVIDTAGIRETEDV 313 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + ++AD++ VVDS L N ++++ ++ R S I+I NK D Sbjct: 314 VEKIGVGKAKQMAENADLILYVVDSSLPLDDNDREIMELLSGRKS--IVIYNKTDL 367 >gi|296269475|ref|YP_003652107.1| small GTP-binding protein [Thermobispora bispora DSM 43833] gi|296092262|gb|ADG88214.1| small GTP-binding protein [Thermobispora bispora DSM 43833] Length = 476 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 12/177 (6%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R VA+VG N GKSTLVNR +G + ++V TR V S + + +DT Sbjct: 34 DPGRLPVVAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYEASWQGRRFTLVDT 93 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILI 136 G + + + AD+V VVD+ + + + + + +RS + ++L+ Sbjct: 94 GGWDPDATGMALRIAEQAQVAAELADVVLFVVDATVGV-TDADEAVGSVLRRSGKPVLLV 152 Query: 137 LNKIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK D +Q E+ ++ + + + +SA G G D+L+ + LP P Sbjct: 153 ANKADN-------QQVELEATALWSLGLGEPYPISALHGRGTGDLLDAMLDALPTPP 202 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 12/143 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+NR G + +V TTR V ++ F+DT GI Sbjct: 215 VALVGRPNVGKSSLLNRMAGEERVLVDPMPGTTRDPVDELIELGGKTYRFVDTAGIRRRD 274 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y + R S ++ ++ +++D+ L ++ +A+ ++L N Sbjct: 275 RELKGADFYAAMRTR---SALERSEAAVVLIDASEPLTEQDLRIISLVAESGRAMVLAFN 331 Query: 139 KIDCVKPER--LLEQAEIANKLV 159 K D + ER LE+ EI KLV Sbjct: 332 KWDLLDEERRYYLEK-EIDRKLV 353 >gi|205371771|sp|Q8Y3H5|MNME_RALSO RecName: Full=tRNA modification GTPase mnmE Length = 474 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 20/155 (12%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 206 GQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 265 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V+ + + + +DT G+ + +D ++ I +W+ I AD+V ++D+ Sbjct: 266 TRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDAA---D 322 Query: 117 VNIHDLLKEIAKRSSRL----------ILILNKID 141 H L E A +R+ + ++NKID Sbjct: 323 YRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKID 357 >gi|160878692|ref|YP_001557660.1| GTP-binding proten HflX [Clostridium phytofermentans ISDg] gi|160427358|gb|ABX40921.1| GTP-binding proten HflX [Clostridium phytofermentans ISDg] Length = 420 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 15/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKSTL+NR A V T R + E Q++ DT G F Sbjct: 203 VVAIVGYTNAGKSTLLNRLTEADVLEANMLFATLDPTTRNLSLESGQQVLLTDTVG-FIR 261 Query: 84 KDSYHKL-MIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K +H + R + K+ADI+ VVD +++++ + +++ LK++ +I + Sbjct: 262 KLPHHLIDAFRSTLEEAKYADIIIHVVDASNPQAYKQMHI-VYETLKKLQVTDKTVITVF 320 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D V+ E + K + +KT +SA +G G ++L+ + L Sbjct: 321 NKQDLVQEEEPM-------KDLKADKTVKISAKQGVGVVELLDIIEEVL 362 >gi|16802002|ref|NP_472270.1| tRNA modification GTPase TrmE [Listeria innocua Clip11262] gi|21363013|sp|Q926U7|MNME_LISIN RecName: Full=tRNA modification GTPase mnmE gi|16415484|emb|CAC98168.1| lin2943 [Listeria innocua Clip11262] Length = 457 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|117928440|ref|YP_872991.1| small GTP-binding protein [Acidothermus cellulolyticus 11B] gi|117648903|gb|ABK53005.1| small GTP-binding protein [Acidothermus cellulolyticus 11B] Length = 458 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 4/163 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTLVNR VG + +IV TR V V+ + +DT G Sbjct: 17 VAVVGRPNVGKSTLVNRIVGRRQAIVEDVPGVTRDRVSYEVTWSGRRFTIVDTGGWQPGA 76 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + AD+V VVD+ + + K + + ++L+ NK+D Sbjct: 77 GGLSARVTAQAELAVAAADLVLFVVDATVGITETDAAVAKLLRRGDKPVLLVANKVDSAA 136 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L+ E+ + + + + + VSA G G D+L+ + + LP Sbjct: 137 GE--LDTGELWS--LGLGQPYTVSALHGRGSGDLLDAVITALP 175 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 8/159 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA+VG N GKS+L+NR G + ++V TTR V IV + + +DT G+ Sbjct: 193 VAIVGRPNVGKSSLLNRLAGEERALVDAVSGTTRDPVDAIVRIGDRRWRVVDTAGLRRRM 252 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +A + +R I+ A+ +++D+ + +++++ L+L NK Sbjct: 253 RDAVGAEFYAGLRTD-QAIRDAEAAVVLLDAAEPITEQDVRIVQKVIDAGRALVLAFNKW 311 Query: 141 DCVKPERLLEQA-EIANKL--VFIEKTFMVSATKGHGCD 176 D V +R L A EI +L V +SA G G + Sbjct: 312 DAVDADRRLALAREIETELGHVGWAPRLNISARTGRGVE 350 >gi|326573502|gb|EGE23468.1| tRNA modification GTPase TrmE [Moraxella catarrhalis O35E] Length = 466 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR + + + DT G+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE--------------LKVNIHDLLKEIAKRS 130 D K+ I+ ++ I+ AD++ +V D E + ++ D++++ Sbjct: 283 DHVEKIGIKRAFDAIRQADVLMMVYDVTTETDPLALADQLFCEGVTEDVGDIIRQ----- 337 Query: 131 SRLILILNKIDCVKPERLLE---QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +LIL+ NK D + + +L+ + + A KLV+ VS G G D+++ L + Sbjct: 338 -KLILVANKSDLLISKPVLQVSCETKSAPKLVY------VSCETGVGLDELIEILTQKVG 390 Query: 188 LAP 190 P Sbjct: 391 FHP 393 >gi|237739602|ref|ZP_04570083.1| GTP-binding protein engA [Fusobacterium sp. 2_1_31] gi|229423210|gb|EEO38257.1| GTP-binding protein engA [Fusobacterium sp. 2_1_31] Length = 441 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +++ +A++G NAGKS+LVN+ G++ +IV+ TTR + ++ K+++ + Sbjct: 168 DFPEEDEDVLKLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYM 227 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT GI ++S + + +IK AD+ L++D+ L + A+ Sbjct: 228 IIDTAGIRRKSKVEESLEYYSVLRALKSIKRADVCILMLDAKEGLTEQDKRIAGIAAEEL 287 Query: 131 SRLILILNKIDCVK 144 +I+++NK D V+ Sbjct: 288 KPIIIVMNKWDLVE 301 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL N +G K++IV TR + S+ V +DT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLIGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L EIA K++ +IL + Sbjct: 65 NDF--LMTKIKEQAEVAMNEADVILFVVDG----KAGLNPLDDEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|16804848|ref|NP_466333.1| tRNA modification GTPase TrmE [Listeria monocytogenes EGD-e] gi|47095618|ref|ZP_00233226.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a F6854] gi|224502775|ref|ZP_03671082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-561] gi|254899731|ref|ZP_05259655.1| tRNA modification GTPase TrmE [Listeria monocytogenes J0161] gi|254913066|ref|ZP_05263078.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818] gi|254937447|ref|ZP_05269144.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900] gi|255028100|ref|ZP_05300051.1| tRNA modification GTPase TrmE [Listeria monocytogenes LO28] gi|21363006|sp|Q8Y3M4|MNME_LISMO RecName: Full=tRNA modification GTPase mnmE gi|16412311|emb|CAD01024.1| lmo2811 [Listeria monocytogenes EGD-e] gi|47016048|gb|EAL06973.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a F6854] gi|258610049|gb|EEW22657.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900] gi|293591067|gb|EFF99401.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818] Length = 457 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|326562321|gb|EGE12647.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 103P14B1] gi|326575525|gb|EGE25450.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 101P30B1] Length = 466 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 30/188 (15%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V L G NAGKS+L+NR G + +IVT TTR + + + DT G Sbjct: 218 RDGVHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE--------------LKVNIHDLLKE 125 + D K+ I+ ++ I AD++ +V D E + ++ D++++ Sbjct: 278 LRKTDDHVEKIGIKRAFDAIHQADVLMMVYDVTTETDPLALADQLFCEDVTEDVGDIIRQ 337 Query: 126 IAKRSSRLILILNKIDCVKPERLLE---QAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +LIL+ NK D + + +L+ + + A KLV+ VS G G D+++ L Sbjct: 338 ------KLILVANKSDLLVSKPVLQVSCETKSAPKLVY------VSCETGEGLDELIEIL 385 Query: 183 CSTLPLAP 190 + P Sbjct: 386 TQKVGFHP 393 >gi|313621862|gb|EFR92546.1| tRNA modification GTPase MnmE [Listeria innocua FSL J1-023] Length = 340 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 100 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 159 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 160 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 217 Query: 140 IDC 142 D Sbjct: 218 TDL 220 >gi|311281727|ref|YP_003943958.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1] gi|308750922|gb|ADO50674.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1] Length = 454 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ + + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAQIWPDF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ + L ++ NK D L + V +SA +G G D + N+L Sbjct: 321 IARLPTNLPITVVRNKADMTGEAVGLSE-------VNGHSLIRLSARQGEGVDLLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|190171254|gb|ACE63697.1| ThdF [Leclercia adecarboxylata] Length = 439 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ + + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTAAVDPAAIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ + L ++ NK D L V +SA G G D++ ++L Sbjct: 313 IARLPANLPITVVRNKADVTGETLGLSD-------VNGHSLIRLSARTGEGVDELRDHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|122702859|emb|CAL88619.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKVNSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|319788687|ref|YP_004148162.1| tRNA modification GTPase TrmE [Pseudoxanthomonas suwonensis 11-1] gi|317467199|gb|ADV28931.1| tRNA modification GTPase TrmE [Pseudoxanthomonas suwonensis 11-1] Length = 445 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 16/175 (9%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+GE+ E ++D + L+G NAGKS+L+N G +IV TTR ++ Sbjct: 198 ELGELLARAERGRRLRDGLHA---VLLGPPNAGKSSLLNALAGDARAIVADVAGTTRDVL 254 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 R +V ++V DT G+ D+ + +R + + ++ AD+ LV+D+ R + + Sbjct: 255 REVVRIDGLELVLADTAGLREGGDAIEREGMRRARAEVERADLALLVLDA-RAPQAD-RA 312 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 L+E A+ + I NK D + RL E A VSA G G D Sbjct: 313 ALEEAARDVPLKLWIHNKADLLP--RLPADGEDA---------IHVSALTGQGLD 356 >gi|300868767|ref|ZP_07113378.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506] gi|300333328|emb|CBN58570.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506] Length = 464 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG VA+VG N GKS+L+N + +IVT TTR +V + I LDT G Sbjct: 223 RSGLKVAIVGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD+V L +D+ ++ +++ R +ILI+NK Sbjct: 283 IRETEDRVEKIGVARSRQAAESADLVLLAIDAAAGWTEGDREIYQQVKHRP--VILIVNK 340 Query: 140 IDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +D V + L + Q++I N + + +A G +D+ Sbjct: 341 VDLVSEKDLEILQSKIENP----QAKVLAAAAYNQGIEDL 376 >gi|254830753|ref|ZP_05235408.1| tRNA modification GTPase TrmE [Listeria monocytogenes 10403S] Length = 457 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|121598239|ref|YP_994136.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1] gi|124384367|ref|YP_001028207.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229] gi|126449818|ref|YP_001083053.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247] gi|238563702|ref|ZP_00438440.2| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4] gi|251767367|ref|ZP_04820085.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20] gi|254175200|ref|ZP_04881861.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399] gi|254201961|ref|ZP_04908325.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH] gi|254207294|ref|ZP_04913645.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU] gi|254359603|ref|ZP_04975874.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280] gi|121227049|gb|ABM49567.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1] gi|124292387|gb|ABN01656.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229] gi|126242688|gb|ABO05781.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247] gi|147747855|gb|EDK54931.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH] gi|147752836|gb|EDK59902.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU] gi|148028817|gb|EDK86749.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280] gi|160696245|gb|EDP86215.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399] gi|238520163|gb|EEP83625.1| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4] gi|243063001|gb|EES45187.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20] Length = 488 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 20/206 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 222 GKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 281 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ L Sbjct: 282 TRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDARSGLG 341 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKG 172 + IA R ++ +LNK D P + A + E +SA +G Sbjct: 342 PGD----EAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGAARADVCE--VRLSAKRG 395 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQI 198 G D + L L +A W A+ + Sbjct: 396 DGIDLLRGEL---LRIAGWQAGAESV 418 >gi|148654184|ref|YP_001281277.1| tRNA modification GTPase TrmE [Psychrobacter sp. PRwf-1] gi|172048596|sp|A5WI36|MNME_PSYWF RecName: Full=tRNA modification GTPase mnmE gi|148573268|gb|ABQ95327.1| tRNA modification GTPase trmE [Psychrobacter sp. PRwf-1] Length = 465 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 21/180 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+N G + +IVT TTR ++ + I DT G+ + Sbjct: 220 VVLAGRPNAGKSSLLNSLAGQERAIVTDVAGTTRDTLQETIVLNGLTIHLTDTAGLRDTT 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---------SRLIL 135 D+ ++ I + + I AD++ LV D +E V+ L E+ S+L+L Sbjct: 280 DAVERIGIERARTAINQADLLLLVYDLSQE--VDPLKLASELFGEGIDGTPNFDPSKLLL 337 Query: 136 ILNKIDCVKPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 I NK D V+ ++ E ANKL + + VS G ++ LC + P Sbjct: 338 IGNKRDLVE-----DKGESANKLADKADILGYEQVNVSCETSQGIPQLIASLCDKVGFHP 392 >gi|332158597|ref|YP_004423876.1| GTP-binding protein [Pyrococcus sp. NA2] gi|331034060|gb|AEC51872.1| GTP-binding protein [Pyrococcus sp. NA2] Length = 186 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 25/180 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE------------KESQI 72 VA++GA N GKSTL+N +G K S V+ TT+ +R + + ++ Sbjct: 4 VAIIGAENVGKSTLMNALLGGKFSEVSETPGTTKGTIRRVFGKIKLPKTMKNPFGGADEL 63 Query: 73 VFLDTPGIFNA-KDSYHKLMIRLSWS----TIKHADIVCLVVDS----HRELKVNIHDLL 123 V +DT G+F+ K+ K++ + I +ADI+ ++D+ HR ++ +H LL Sbjct: 64 VLIDTAGLFDPEKEVRGKVLSEEKFKELIREITNADIIIHMIDATKGLHRGME-KLHYLL 122 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 K + +I+++NKID V E++ E +I K + ++ ++S G +D+L L Sbjct: 123 K--FRYEKPIIVVINKIDLVPREKVEELRKIVKKRLE-QEPILLSLVTYEGFNDLLKALT 179 >gi|295108622|emb|CBL22575.1| tRNA modification GTPase trmE [Ruminococcus obeum A2-162] Length = 457 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG +IVT TTR I+ +S + +DT GI +D Sbjct: 225 ILGKPNAGKSSLLNFLVGEDRAIVTEIAGTTRDILEEYISLNGITLRMIDTAGIRETEDI 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + + AD++ VVDS L N ++++ ++ R S I+I NK D Sbjct: 285 VEKIGVGKAKQMAEDADLILYVVDSSLPLDENDREIMELLSGRKS--IVIYNKTDL 338 >gi|118582021|ref|YP_903271.1| tRNA modification GTPase TrmE [Pelobacter propionicus DSM 2379] gi|205415790|sp|A1AV43|MNME_PELPD RecName: Full=tRNA modification GTPase mnmE gi|118504731|gb|ABL01214.1| tRNA modification GTPase trmE [Pelobacter propionicus DSM 2379] Length = 456 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 13/170 (7%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 FNE + + S V ++G NAGKS+L+NR + +IVTH TTR I+ ++ Sbjct: 211 FNEGRLLREGIS----VLIIGKPNAGKSSLLNRLLNENRAIVTHLPGTTRDIIEETINLG 266 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + LDT GI + +D + I + I AD++ V+D R D L A Sbjct: 267 GLAVRLLDTAGIRHTEDVIEQEGINRALEKIPQADLILFVLDGSRPF--GPEDRLILDAL 324 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + +R + ++K D P L +E N + +F SA G G DD+ Sbjct: 325 QGNRFVAAISKADL--PRVLELPSECCN---LPQVSF--SAESGEGVDDL 367 >gi|302039510|ref|YP_003799832.1| GTP-binding protein EngA [Candidatus Nitrospira defluvii] gi|300607574|emb|CBK43907.1| GTP-binding protein EngA [Candidatus Nitrospira defluvii] Length = 464 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 5/171 (2%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 F + R +AL+G N GKSTL NR +G + +IV TR + + + Sbjct: 21 FTLEGGRLPIIALIGRPNVGKSTLFNRILGTRAAIVDDVPGVTRDRNYADSTYRNRRFRL 80 Query: 75 LDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DT G+ A + L+ + S I ADI+ LV+D+ L ++++ + + Sbjct: 81 VDTGGLDPTASEGMLSLIRQQSQLAIAEADILVLVLDARSGLTPADEEVVQTLRGSDKPV 140 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 ++NKID K + L+ + E+ + +SA G G ++L+ L S Sbjct: 141 YYVINKIDTPKADPLVADFYRLGQ----EQLYPLSAEHGIGVAELLDDLFS 187 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTLVN +G +V++ TTR V + + K+ Q V DT GI Sbjct: 204 IAIVGRPNVGKSTLVNSVLGEARVVVSNVPGTTRDPVDSVATFKDRQYVLTDTAGIRRRG 263 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + S I +DI L++D+ + + + K+ ILI+NK D Sbjct: 264 RVERGIEGYSVARSLRAIGRSDIAVLLLDAEEGVTEQDTKIAGLVLKQGRACILIVNKWD 323 Query: 142 C 142 Sbjct: 324 L 324 >gi|157149742|ref|YP_001450550.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis substr. CH1] gi|189036214|sp|A8AXP0|MNME_STRGC RecName: Full=tRNA modification GTPase mnmE gi|157074536|gb|ABV09219.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis substr. CH1] Length = 457 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI++ S+R++L LNK Sbjct: 281 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLL-EISQDSNRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|90194084|gb|ABD92603.1| ThdF [Bibersteinia trehalosi] Length = 436 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGNPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + A D K+ I+ +W I AD V L++DS Sbjct: 263 LREASDEVEKIGIQRAWDEIGQADHVLLMIDS 294 >gi|90194100|gb|ABD92611.1| ThdF [Actinobacillus genomosp. 1] Length = 436 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D ++ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 263 LREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|327474514|gb|EGF19919.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK408] Length = 436 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + S + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + EI + + F VS+ G G DVL+ + LP V + D I Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVVENPDMI 175 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|323143419|ref|ZP_08078104.1| tRNA modification GTPase TrmE [Succinatimonas hippei YIT 12066] gi|322416824|gb|EFY07473.1| tRNA modification GTPase TrmE [Succinatimonas hippei YIT 12066] Length = 456 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 9/177 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 + L G+ NAGKS+L+N G + +IVT+ TTR I+ + + DT GI + Sbjct: 218 IVLAGSPNAGKSSLLNALAGEERAIVTNIPGTTRDILSINIEIGGIPVTITDTAGIRDTP 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILNKID 141 D + I+ + +K AD+V L+VD+ H L LKEI ++ L+LI +K D Sbjct: 278 SDEIEAIGIKRAIEMLKKADLVLLMVDASSPAPEAEHTLKRLKEIFGDNTNLLLIKSKSD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKG-HGCDDVLNYLCSTLPLAP--WVYSA 195 PE E A++ N F + + S+TK G D++ L L P V+SA Sbjct: 338 L--PEN-KETAKLLNNPDFSQYKQISSSTKNPTGLDNLRAELKKALGEIPAEGVFSA 391 >gi|323527917|ref|YP_004230070.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001] gi|323384919|gb|ADX57010.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001] Length = 464 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 18/180 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D K+ I +WS I+ AD+V ++D+ + + IA+R ++ +LNK Sbjct: 288 EDEVEKIGIARTWSEIERADVVLHLLDARTGMTAED----ETIARRFPAGVPVVRVLNKT 343 Query: 141 DCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D V PE A+ F +SA +G G + L L +A W A+ + Sbjct: 344 DLVGLPPETRALDAD------FDLSEVRLSAKQGDGVGLLRGEL---LRIAGWQAGAESV 394 >gi|253702732|ref|YP_003023921.1| tRNA modification GTPase TrmE [Geobacter sp. M21] gi|251777582|gb|ACT20163.1| tRNA modification GTPase TrmE [Geobacter sp. M21] Length = 455 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 8/137 (5%) Query: 6 ITFFNEHKDFVQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 IT F+E + R G V + G N GKS+L+N + K +IVT TTR ++ + Sbjct: 208 ITGFDEGRVL-----RDGVSVVIAGKPNVGKSSLLNTLLKEKRAIVTSVPGTTRDLIEEV 262 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 V+ + LDT GI + D + +RLS I AD+V V+D V +L+ Sbjct: 263 VNINGLPVKLLDTAGIRESDDQVEQEGVRLSLDRIPKADLVLFVIDGSSVFGVEDATILQ 322 Query: 125 EIAKRSSRLILILNKID 141 + +S I++ NK D Sbjct: 323 AVGSKSC--IVVRNKSD 337 >gi|327470401|gb|EGF15857.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK330] Length = 436 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + S + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + EI + + F VS+ G G DVL+ + LP V + D I Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVVKNPDMI 175 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|325690931|gb|EGD32931.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK115] Length = 436 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + S + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + EI + + F VS+ G G DVL+ + LP V + D I Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVVENPDMI 175 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|225872683|ref|YP_002754140.1| putative GTP-binding protein HflX [Acidobacterium capsulatum ATCC 51196] gi|225792080|gb|ACO32170.1| putative GTP-binding protein HflX [Acidobacterium capsulatum ATCC 51196] Length = 432 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 14/177 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N GA V + T +R IV +++ DT G Sbjct: 211 TVALVGYTNAGKSTLFNALTGAGVLASSRMFATLDPKLRAIVLPSRRKVLLSDTVGFI-- 268 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILIL 137 +D L+ R + ++ A+++ V D + E + + +L E+ I +L Sbjct: 269 RDLPPTLISSFRATLEEVQKAEVLLHVQDCSSATREEHRAEVKHVLAELGAGDKPQIEVL 328 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 NK+D + PE EQ + + + +SA G G +D+L + L P V + Sbjct: 329 NKVDLLSPE---EQEGLRSGH---GRPMAISARTGMGLEDLLERIDEALQADPMVEA 379 >gi|154249072|ref|YP_001409897.1| tRNA modification GTPase TrmE [Fervidobacterium nodosum Rt17-B1] gi|205829140|sp|A7HK07|MNME_FERNB RecName: Full=tRNA modification GTPase mnmE gi|154153008|gb|ABS60240.1| tRNA modification GTPase TrmE [Fervidobacterium nodosum Rt17-B1] Length = 459 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 16/154 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL+NR + +IVT TTR +++G + K + DT GI Sbjct: 228 TMAIVGKPNVGKSTLLNRLLVEDRAIVTDIPGTTRDVIKGELKIKGVHFIISDTAGIRMT 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 +D K+ I + + K +D++ ++D+ I++L+K+ I + NKI Sbjct: 288 EDKVEKIGIEKALNEAKKSDVILFLLDATTGFTNEDEYIYNLIKD-----CNFIPVWNKI 342 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 D + ++ +VF+ + ++SA G G Sbjct: 343 DIAE--------KVDKDIVFLRNSVVISAETGRG 368 >gi|88798543|ref|ZP_01114127.1| tRNA modification GTPase [Reinekea sp. MED297] gi|88778643|gb|EAR09834.1| tRNA modification GTPase [Reinekea sp. MED297] Length = 455 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 5/122 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR +++ + + +DT G+ +A Sbjct: 219 TVVIAGRPNAGKSSLLNALSGQERAIVTDIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDA 278 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH----DLLKEIAKRSSRLILILNK 139 D+ ++ + +W+ I+ AD + L+VD+ V+ D + + +R ++L +I NK Sbjct: 279 PDAVERIGVERAWAEIETADRILLMVDATDTDAVDPETIWPDFMHRLPER-AQLTVIRNK 337 Query: 140 ID 141 ID Sbjct: 338 ID 339 >gi|322411159|gb|EFY02067.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 436 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV + TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVENVEGVTRDRIYATGEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + ++ AD++ VV S +E + + + +I R++ +IL +NK+D Sbjct: 65 DAPFMEQIKNQAQIAMEEADVIVFVV-SGKEGVTDADEYVSKILYRTNTPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G D+L+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDILDAIVENLPV 165 Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVF 74 V++N +L+G N GKS+L+N +G I + TTR + ++ + Q Sbjct: 168 VEENDDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTM 227 Query: 75 LDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAK 128 +DT G+ + Y K + + I +D+V +V+++ RE I E K Sbjct: 228 IDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK 287 Query: 129 RSSRLILILNKIDCV 143 +I+++NK D + Sbjct: 288 ---GMIIVVNKWDTI 299 >gi|17544724|ref|NP_518126.1| tRNA modification GTPase TrmE [Ralstonia solanacearum GMI1000] gi|17427013|emb|CAD13533.1| probable trna modification gtpase trme protein [Ralstonia solanacearum GMI1000] Length = 481 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 20/155 (12%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 213 GQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 272 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V+ + + + +DT G+ + +D ++ I +W+ I AD+V ++D+ Sbjct: 273 TRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDAA---D 329 Query: 117 VNIHDLLKEIAKRSSRL----------ILILNKID 141 H L E A +R+ + ++NKID Sbjct: 330 YRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKID 364 >gi|190171252|gb|ACE63696.1| ThdF [Leclercia adecarboxylata ATCC 23216] Length = 439 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ + + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTAAVDPAAIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ + L ++ NK D L V +SA G G D++ ++L Sbjct: 313 IARLPANLPITVVRNKADVTGETLGLSD-------VNGHSLIRLSARTGEGVDELRDHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|122702623|emb|CAL88501.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + I K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|46202523|ref|ZP_00053076.2| COG2262: GTPases [Magnetospirillum magnetotacticum MS-1] Length = 421 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 34/201 (16%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL N+ A+V T +R +V +I+ DT G + Sbjct: 194 VALVGYTNAGKSTLFNQLTRAEVLAKDMLFATLDPTMRTLVLPSGRKIILSDTVGFIS-- 251 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNIHDL--------LKEIAKRSSRL 133 D H+L+ R + + ADIV V D SH + + D+ L E+ R L Sbjct: 252 DLPHELVAAFRATLEEVLEADIVVHVRDISHPDTEAQSADVDTVLKELGLAEVVDRG--L 309 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS--------- 184 + LNKID + ER + E+ N+ + +SA G G D++L L Sbjct: 310 VEALNKIDLLDEER---RHEVLNQARRRDGVMALSAITGQGVDELLAELDRRLGHARETI 366 Query: 185 --TLPLA-----PWVYSADQI 198 LPL W+YS ++ Sbjct: 367 DVALPLGDGASIAWLYSHGEV 387 >gi|324991080|gb|EGC23014.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK353] Length = 457 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 9/132 (6%) Query: 18 DNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D +R G A++G N GKS+L+N + +IVT TTR ++ V+ K Sbjct: 212 DTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGV 271 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + +DT GI D ++ + S ++ AD+V LV+++ L LL EI++ S Sbjct: 272 PLKLIDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASESLTEQDRQLL-EISQDS 330 Query: 131 SRLILILNKIDC 142 +R++L LNK D Sbjct: 331 NRIVL-LNKTDL 341 >gi|190171236|gb|ACE63688.1| ThdF [Enterobacter radicincitans] Length = 439 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCV 143 IA+ +RL ++ NK D Sbjct: 313 IARLPARLPITVVRNKADVT 332 >gi|114332120|ref|YP_748342.1| tRNA modification GTPase TrmE [Nitrosomonas eutropha C91] gi|114309134|gb|ABI60377.1| tRNA modification GTPase trmE [Nitrosomonas eutropha C91] Length = 459 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+NR G +++IVT TTR +R + + + +DT G+ Sbjct: 226 VVLTGQPNVGKSSLLNRLAGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETS 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + I +++ I+ AD+V L+VD + H +L + K ++ + NKID Sbjct: 286 DIVEQHGIARAYAAIEQADLVLLLVDGRYGVTKEDHSVLARLPKELP-VLTVHNKID 341 >gi|282880433|ref|ZP_06289141.1| tRNA modification GTPase TrmE [Prevotella timonensis CRIS 5C-B1] gi|281305704|gb|EFA97756.1| tRNA modification GTPase TrmE [Prevotella timonensis CRIS 5C-B1] Length = 478 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TN GKSTL+N+ + +IV++ TTR ++ F+DT GI Sbjct: 235 VAIIGKTNVGKSTLLNQLLEEDKAIVSNIHGTTRDVIEDTTEINGITFRFIDTAGIRKTT 294 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D L I ++ I+ A IV + D K + DLLK I +S LI I NK+D Sbjct: 295 DEIENLGIERTYQKIEEAKIVLWLTD-EAPTKQEVDDLLKRIKDKS--LICIQNKMD 348 >gi|227498500|ref|ZP_03928646.1| small GTP-binding protein [Acidaminococcus sp. D21] gi|226903958|gb|EEH89876.1| small GTP-binding protein [Acidaminococcus sp. D21] Length = 403 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N F +++SIV TR + + + + +DT GI A Sbjct: 5 IVAIVGRPNVGKSTLFNIFADSRISIVEDTPGVTRDRLYAEAEWLDRRFMMVDTGGIEIA 64 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + IR IK AD++ V D+ + ++ K I ++L +NK D Sbjct: 65 NTDSIAVSIREQAKIAIKEADVILFVCDARTGVTTEDQEVAKLIRMAQKPVVLAVNKADT 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P + LE E N + I + +M+SA+ D+L+ + S P Sbjct: 125 --PTQELEAYEFYN--LGIGEPYMISASNRLNLGDLLDAVVSHFP 165 Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 3/127 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G N GKS++ N +G SIV+ TTR + V + +F+DT G+ Sbjct: 181 VAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDVPVMKDGQTYLFIDTAGMRRKG 240 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K I + + +D+V +V+D+ + + + ++L++NK D Sbjct: 241 KIDEPIEKYSIIRTLRAVDRSDVVLMVLDAVDGVTEQDKKIAGYAHEAGKGIVLVVNKWD 300 Query: 142 CVKPERL 148 + + + Sbjct: 301 LYQKDEM 307 >gi|295101869|emb|CBK99414.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii L2-6] Length = 455 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKSTL+N G +IVT TTR +V V + ++ DT G+ +D Sbjct: 225 AIVGKPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDVRLNLFDTAGLRQTED 284 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 IR SW + A ++ V D S R + ++ +L + A R + I ++NK D K Sbjct: 285 EIEAEGIRRSWKKLDEAGLILAVFDGSERPTREDL-ELAQRCAGRPA--IALVNKED--K 339 Query: 145 PERL 148 P R Sbjct: 340 PTRF 343 >gi|254456366|ref|ZP_05069795.1| tRNA modification GTPase TrmE [Candidatus Pelagibacter sp. HTCC7211] gi|207083368|gb|EDZ60794.1| tRNA modification GTPase TrmE [Candidatus Pelagibacter sp. HTCC7211] Length = 443 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 5/122 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G TNAGKS+L+N V+IV+ TTR ++ ++ ++ DT GI ++K Sbjct: 217 IAILGPTNAGKSSLLNHLSNRDVAIVSEIAGTTRDVIETHLNIDGYPVIVSDTAGIRDSK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + K I+LS + AD+ +VVD ++ D+L + ++S IL++NK D +K Sbjct: 277 NEIEKKGIKLSLNRADEADLKLVVVDVKN---LDFTDVLMGLLDQNS--ILVINKSDLLK 331 Query: 145 PE 146 + Sbjct: 332 GD 333 >gi|18976769|ref|NP_578126.1| GTP-binding protein [Pyrococcus furiosus DSM 3638] gi|18892360|gb|AAL80521.1| GTP-binding protein homologue [Pyrococcus furiosus DSM 3638] Length = 186 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 25/180 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE------------KESQI 72 VA++GA N GKSTL+N +G K+S V+ TT+ ++ + ++ Sbjct: 4 VAIIGAENVGKSTLMNALLGGKISEVSEVPGTTKGTIKRAFGKIKLPKTIKNPFGGADEL 63 Query: 73 VFLDTPGIFNA-KDSYHKLMIRLSW----STIKHADIVCLVVDS----HRELKVNIHDLL 123 V +DT G+F+ K+ K++ ++ + I ADI+ ++D+ HR ++ +H +L Sbjct: 64 VLIDTAGLFDPEKEIRGKVLSEEAFKELINEIIRADIIIHMIDATKGLHRGME-KLHYIL 122 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 K + +I+++NKID V E++ E A+I K + +K ++S G +D+L L Sbjct: 123 K--FRYEKPIIVVINKIDLVPREKVEELAKIVEKRLE-QKPILLSLVTYEGFNDLLKALV 179 >gi|226315527|ref|YP_002775423.1| tRNA modification GTPase [Brevibacillus brevis NBRC 100599] gi|226098477|dbj|BAH46919.1| probable tRNA modification GTPase [Brevibacillus brevis NBRC 100599] Length = 458 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V + +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGLSTAIIGRPNVGKSSLLNSLVQEEKAIVTDVAGTTRDVIEEYVNVRGVPLRLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S ++ AD+V LV++ + L + + + + A + +I+I+NK Sbjct: 278 IRDTEDIVEKIGVEKSRQLLQKADLVLLVINYNEPLSADDYAIFE--AAKGFHVIVIVNK 335 Query: 140 ID 141 D Sbjct: 336 FD 337 >gi|229917461|ref|YP_002886107.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b] gi|229468890|gb|ACQ70662.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b] Length = 459 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V +IVT TTR + V+ K + +DT G Sbjct: 219 REGLATAIIGRPNVGKSSLMNTLVQETKAIVTEIAGTTRDTIEEYVNVKGVPLKLIDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S ++ AD+V LV++ H L V L + A + I+I+NK Sbjct: 279 IRETEDIVERIGVEKSRKALEAADLVLLVLNGHEGLTVEDEALFE--AVKGMNAIIIINK 336 Query: 140 IDC 142 D Sbjct: 337 TDL 339 >gi|163783084|ref|ZP_02178079.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1] gi|159881764|gb|EDP75273.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1] Length = 448 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 20/159 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L N + +IVT TTR + ++ + + +DT GI ++ Sbjct: 218 LAIVGRPNVGKSSLFNALLKEDRAIVTDIEGTTRDYIEESLNLRGIPVRLIDTAGIRESE 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ + S I+ AD+V VVD+ EL+ + +++ + ++++ NKID Sbjct: 278 DPVERIGVERSMEKIEEADVVLFVVDASEELREEDSLIYEKLGDKD--IVVVFNKID--- 332 Query: 145 PERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDV 178 ++V +EK VSA KG+G D+ Sbjct: 333 ----------RGEVVPLEKFQGHSIIKVSALKGYGLKDL 361 >gi|57242376|ref|ZP_00370315.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis RM3195] gi|57017056|gb|EAL53838.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis RM3195] Length = 442 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 1/122 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKS+L+N + + +IV+ TTR + + + +DT GI ++ Sbjct: 217 IAIIGKPNAGKSSLLNALLAYERAIVSPLAGTTRDFIEESLKIGTHLVKIMDTAGIRESE 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + K+ I LS ++ ADI+ + DS R+ ++L + ++ +LNK D +K Sbjct: 277 EELEKIGIELSKKSLNEADIILALFDSSRKFDDEDKEILNLLRNSKKKVFYLLNKCD-LK 335 Query: 145 PE 146 P+ Sbjct: 336 PQ 337 >gi|225181151|ref|ZP_03734597.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1] gi|225168120|gb|EEG76925.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1] Length = 460 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+L+N + + +IVT TTR ++ V+ + +DT GI D Sbjct: 224 AIVGRPNVGKSSLLNALLKEQRAIVTDIPGTTRDVLEESVNLGGIALTMVDTAGIRETTD 283 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K+ + S + AD+V V+D+ +L +LL+ ++ LI+I+NK D V Sbjct: 284 TVEKMGVERSREALGQADLVLYVLDASDDLTAEDIELLQAAGEKP--LIVIVNKTDLV 339 >gi|332799113|ref|YP_004460612.1| GTP-binding protein engA [Tepidanaerobacter sp. Re1] gi|332696848|gb|AEE91305.1| GTP-binding protein engA [Tepidanaerobacter sp. Re1] Length = 439 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 6/177 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKSTL NR +G ++SIV K TR + G + +DT G+ Sbjct: 2 SFIVAVVGKPNVGKSTLFNRIIGKRISIVDDKPGVTRDRIYGEAEWNGKKFTMVDTGGVE 61 Query: 82 NA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A KD M R + I+ A+++ +VD L D+ + + + ++L++NK+ Sbjct: 62 PASKDIILSQMKRQADFAIETANLILFMVDGKEGLTPTDLDVAQILRRSGKPVLLVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + KL F + F +SA G D+L+ + + P + S D+ Sbjct: 122 DNYTNTAYDYEFY---KLGFGDPIF-ISAVHGLAVGDLLDKITDYIE-EPHILSEDE 173 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 18/168 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA++G N GKS+L+N +G + IV+ TTR + +++F+DT G+ Sbjct: 178 VAIIGKPNVGKSSLLNAILGEERVIVSDIPGTTRDAIDSYFEINGKKMLFIDTAGLRKKS 237 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 ++D + +R + I AD+V +V+D+ + NI + K IA + +I+I Sbjct: 238 RISEDVEYYSTVR-ALGAIDRADVVLMVLDASQ----NISEQDKRIAGIAHEAGKAVIII 292 Query: 137 LNKIDCVKPERLLEQ---AEIANKLVFIEKT--FMVSATKGHGCDDVL 179 +NK D + + +I N+L F++ VSA G +L Sbjct: 293 VNKWDLIDKDSHTTDEFSKKIKNELAFMQYAPIVYVSAKTGQRVGRIL 340 >gi|328794276|ref|XP_001123208.2| PREDICTED: tRNA modification GTPase mnmE-like, partial [Apis mellifera] Length = 342 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 3/154 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G ++IVT TTR VR ++ + +DT G+ + Sbjct: 106 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETE 165 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I S ++ AD+ +++D L +L ++ S I + NKID Sbjct: 166 DVVERIGIERSQQAVQQADVALILIDQCEGLNATTAAILAQLPA-SLHKIEVHNKIDLTG 224 Query: 145 PERLLEQAEIANKLVFIE--KTFMVSATKGHGCD 176 E F + + +SA G G D Sbjct: 225 EAASCVSRETGKLRAFTDAGQVIALSARTGEGLD 258 >gi|330831723|ref|YP_004394675.1| tRNA modification GTPase mnmE [Aeromonas veronii B565] gi|328806859|gb|AEB52058.1| tRNA modification GTPase mnmE [Aeromonas veronii B565] Length = 453 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + + Sbjct: 218 VVIAGRPNAGKSSLLNALAGRESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQ 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LILILNKID 141 D ++ I +W+ I+ AD V +VD V+ ++ E R + L +I NK D Sbjct: 278 DKVEQIGIERAWAEIEQADRVLFMVDGTTTDAVDPREIWPEFVDRLPKNIGLTVIRNKAD 337 >gi|270264725|ref|ZP_06192990.1| GTP-binding protein EngA [Serratia odorifera 4Rx13] gi|270041408|gb|EFA14507.1| GTP-binding protein EngA [Serratia odorifera 4Rx13] Length = 493 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + ++ + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRNRQKATFLVANKTDGM 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 208 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRG 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL I L++++NK D Sbjct: 268 KVTETVEKFSVIKTLQAIEDANVVLLVVDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 327 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL-----NYLCST 185 + E E+ + +L F++ + +SA G G ++ Y C+T Sbjct: 328 GMSEEDREHVKEMLDLRLGFVDFARIHFISALHGSGVGNLFVSVLEAYECAT 379 >gi|255023683|ref|ZP_05295669.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-208] Length = 273 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 33 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 92 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL V L + A +++LNK Sbjct: 93 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFE--AAAGHNYVVVLNK 150 Query: 140 IDC 142 D Sbjct: 151 TDL 153 >gi|160944275|ref|ZP_02091504.1| hypothetical protein FAEPRAM212_01784 [Faecalibacterium prausnitzii M21/2] gi|158444457|gb|EDP21461.1| hypothetical protein FAEPRAM212_01784 [Faecalibacterium prausnitzii M21/2] Length = 456 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKSTL+N G +IVT TTR +V V + ++ DT G+ +D Sbjct: 225 AIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDIRLNLFDTAGLRETED 284 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 + IR SW ++ A ++ V D L + A R + I ++NK D KP Sbjct: 285 AIEAEGIRRSWKKLEEAGLILAVFDGSEPPSREDLALAQRCAGRPA--IALVNKED--KP 340 Query: 146 ERL 148 R Sbjct: 341 TRF 343 >gi|253581093|ref|ZP_04858353.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847629|gb|EES75599.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 474 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 5/128 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N +G +IVT TTR I+ ++ + +DT GI KD Sbjct: 242 ILGKPNAGKSSLLNLLIGENRAIVTDIAGTTRDILEEYITLHGISLKIIDTAGIRETKDI 301 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC---V 143 K+ + + + AD++ VVDS L N ++++ + + + I++ NK D + Sbjct: 302 VEKIGVDRAREMAQKADLILYVVDSSVPLDENDEEIMEMLTGK--KAIILYNKTDLQPEI 359 Query: 144 KPERLLEQ 151 +PE L E+ Sbjct: 360 QPEILKEK 367 >gi|90194092|gb|ABD92607.1| ThdF [Actinobacillus hominis] Length = 435 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 28 VGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSY 87 G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G+ A D Sbjct: 210 AGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 269 Query: 88 HKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ I+ +W I+ AD V L++DS + K D L ++ + + +I NK+D Sbjct: 270 EKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTVIRNKVDL 327 >gi|332531204|ref|ZP_08407117.1| tRNA modification GTPase TrmE [Hylemonella gracilis ATCC 19624] gi|332039311|gb|EGI75724.1| tRNA modification GTPase TrmE [Hylemonella gracilis ATCC 19624] Length = 452 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 54/94 (57%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR +V+ + + + +DT G+ ++ Sbjct: 222 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDVVQQTIQIEGVPLHVVDTAGLRESQ 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN 118 D ++ I +W+ I AD V + D R+++ + Sbjct: 282 DEVERIGIERAWAQIASADAVLFLHDLTRQIQAD 315 >gi|219850590|ref|YP_002465023.1| GTP-binding protein EngA [Chloroflexus aggregans DSM 9485] gi|254783144|sp|B8GAY7|DER_CHLAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219544849|gb|ACL26587.1| small GTP-binding protein [Chloroflexus aggregans DSM 9485] Length = 449 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 8/187 (4%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 + +T + K F +D R VA+VG N GKS+L+NR +G + S+V+ TTR + Sbjct: 163 LDRLTEYFPPKTFEKDEERHLRVAIVGRPNVGKSSLLNRLLGKERSVVSPIPGTTRDPID 222 Query: 63 GIVSEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ I +DT GI A + K + + I+ D+ L+VD+ + Sbjct: 223 TTITYYGEPITLIDTAGIRRAGKIERGIEKYSVLRTLRAIERCDVAMLLVDATEGVTAQD 282 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHG 174 + + + LIL++NK D + + + A K V +SA G Sbjct: 283 THIAGMVIEAKKGLILVVNKWDAITKDSQTYYEFEHRVREAFKFVDYAPIVFISALTGQR 342 Query: 175 CDDVLNY 181 +L+Y Sbjct: 343 VSHLLDY 349 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 19/183 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST NR +G + +IV TTR + G + +DT G+ Sbjct: 6 VAIVGRPNVGKSTFFNRLIGERRAIVEDIPGTTRDRLYGDTFWNGREFTVVDTAGLLFGD 65 Query: 85 DSYHKLMIRLSWST-------IKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLI 134 + + ++ T I AD + +VD L ++ D+L+ AK ++ Sbjct: 66 EDPSLPEVEIARRTRVQAEHAIAEADAIIFMVDGRDGLTTADADVADILRTTAK---PVV 122 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 L +NK C ER+L+ E + + +SA G G DVL+ L P P + Sbjct: 123 LAVNK--CDSQERMLDAVEF--YALNLGDPIPMSAFHGLGTGDVLDRLTEYFP--PKTFE 176 Query: 195 ADQ 197 D+ Sbjct: 177 KDE 179 >gi|116074031|ref|ZP_01471293.1| tRNA modification GTPase [Synechococcus sp. RS9916] gi|116069336|gb|EAU75088.1| tRNA modification GTPase [Synechococcus sp. RS9916] Length = 463 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 13/184 (7%) Query: 18 DNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D R+G VALVG N GKS+L+NR + +IVT TTR ++ + + I LD Sbjct: 225 DALRTGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLD 284 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 T GI D+ +L I S + AD+V L+ D LL I + L L+ Sbjct: 285 TAGIRVTTDAVEQLGIARSHDALASADLVLLLFDLSEGWTAEDQALLARIPEGVEHL-LV 343 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL---CSTLPLAPWVY 193 NK D P QAE V ++ +SA G G +++ + C L P + Sbjct: 344 GNKADLAAP----VQAEGRPLAVDVQ----LSAQTGDGEAELVQAMLRRCGALSEQPLLL 395 Query: 194 SADQ 197 + +Q Sbjct: 396 ALNQ 399 >gi|229035142|ref|ZP_04189088.1| tRNA modification GTPase mnmE [Bacillus cereus AH1271] gi|228728208|gb|EEL79238.1| tRNA modification GTPase mnmE [Bacillus cereus AH1271] Length = 458 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER+ E A Sbjct: 336 TDLPQTIDMERVTELA 351 >gi|325694429|gb|EGD36338.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK150] Length = 457 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLCEDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI+K S+R++L LNK Sbjct: 281 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISKGSNRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|315646583|ref|ZP_07899701.1| GTP-binding proten HflX [Paenibacillus vortex V453] gi|315278226|gb|EFU41546.1| GTP-binding proten HflX [Paenibacillus vortex V453] Length = 429 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 10/136 (7%) Query: 21 RSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +SG V ALVG TNAGKSTL+NR A V I T R + ++V DT Sbjct: 204 KSGAVQVALVGYTNAGKSTLLNRLTAADVYIEDQLFATLDPTSRALELPSGKEVVLTDTV 263 Query: 79 GIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSR 132 G ++ H L+ R + AD++ VVDS ++ +H +L+++ Sbjct: 264 GFI--QNLPHDLVAAFRATLEEANEADLILHVVDSSSPMRDEQMAVVHSILQDLGAADKP 321 Query: 133 LILILNKIDCVKPERL 148 I++ NK D +PE+L Sbjct: 322 QIVLFNKKDACEPEQL 337 >gi|288928132|ref|ZP_06421979.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 317 str. F0108] gi|288330966|gb|EFC69550.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 317 str. F0108] Length = 460 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 11/122 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+NR + + +IV+ TTR ++ + F+DT GI Sbjct: 228 VAIVGKTNVGKSTLLNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFIDTAGIRKTS 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHREL----KVNIHDLLKEIAKRSSRLILILNKI 140 D L I ++ + A IV V+D L ++N H R RLI++ NK Sbjct: 288 DEIESLGIERTYQKLTEAAIVLWVIDKAPTLSEIEEMNAH-------TRGKRLIVVSNKT 340 Query: 141 DC 142 D Sbjct: 341 DA 342 >gi|257066409|ref|YP_003152665.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548] gi|256798289|gb|ACV28944.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548] Length = 439 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 11/179 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 V LVG TN GKSTL NR VG + SI TR + V + + + +DT G+ + Sbjct: 5 IVTLVGRTNVGKSTLFNRLVGKRKSITEDISGVTRDRIVDKVEWQNKEFLLVDTGGLDIS 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + + +++ VVD + D+ EI K + +I++ NK+D Sbjct: 65 NKEVMNTEIKAQVEKALIETNLILFVVDGKEGVNPYDVDIANEIRKYNKPVIIVANKLDS 124 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 K P+ + + + + M+SA + G D+L+ + S + + S DQI D Sbjct: 125 FKIPDDIYDFYQFG-----FDDMSMISAEQSKGLGDLLDKIVSFIDFS----SFDQIED 174 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 6/136 (4%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D ++D +R +A++G NAGKS+LVN + + IVT TTR V + V Sbjct: 170 DQIEDETR---IAIIGKPNAGKSSLVNLLLNEERMIVTDIAGTTRDAVDSYWQYNDHNYV 226 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ K++ + ++ + ++I ++D++ + + + Sbjct: 227 LIDTAGLRRKSKVKENVEYYANQRTFDAVDSSEICLFLIDANVGVTEQDAKIAGYAHNQK 286 Query: 131 SRLILILNKIDCVKPE 146 +I+ +NK D V E Sbjct: 287 KAIIIAVNKWDLVDKE 302 >gi|256370714|ref|YP_003108539.1| GTP-binding protein EngA [Candidatus Sulcia muelleri SMDSEM] gi|256009506|gb|ACU52866.1| GTP-binding protein EngA [Candidatus Sulcia muelleri SMDSEM] Length = 438 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 7/158 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V++VG +N GKSTL NR +G K SIV K TR G + +DT G N Sbjct: 5 VSIVGRSNVGKSTLFNRLIGYKKSIVNSKSGVTRDRNYGFCNWNGIDFCLIDTGGYTNKF 64 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ + K + + ++ +D++ +VD S++ L+++ +++ K + K + L++NKID Sbjct: 65 NNIFDKKICEQFFFALEESDLILFLVDPSNKILEID-YEISKILHKLKKTIYLVINKIDL 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +K + E KL F K + +S+ G G ++L+ Sbjct: 124 LKKK---ENISEFFKLGF-SKKYCISSINGAGTGELLD 157 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 8 FFNEHKDFV--QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 F N DF + N +A+VG N GKSTL+N + +IV++ TTR + Sbjct: 163 FKNTETDFFVKKKNQFIPKLAIVGRPNVGKSTLINTLLKKNQNIVSNISGTTRDSLEVFY 222 Query: 66 SEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + + + +DT GI K++ + + +IK++D+ L++DS ++ ++ Sbjct: 223 KKFGIECILVDTAGIRKKNKIKENIEFYSVMRAIKSIKNSDVCLLLIDSISGMESQDLNI 282 Query: 123 LKEIAKRSSRLILILNKIDCVKPERL 148 K I + +IL++NK D +K + L Sbjct: 283 FKIIENNNKGIILLINKCDLIKNKFL 308 >gi|126668974|ref|ZP_01739913.1| tRNA modification GTPase [Marinobacter sp. ELB17] gi|126626558|gb|EAZ97216.1| tRNA modification GTPase [Marinobacter sp. ELB17] Length = 456 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ ++ Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSP 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+ AD + L+VD+ + + H++ + + ++ + +I NK+D Sbjct: 279 DEVEQIGIARAWDEIRQADRILLMVDATTTDRTSPHEIWPDFIDQLPAAAPITVIRNKVD 338 >gi|122700685|emb|CAL87931.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G + +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGINALIDAILSALNLNP 170 >gi|86742193|ref|YP_482593.1| small GTP-binding protein domain-containing protein [Frankia sp. CcI3] gi|86569055|gb|ABD12864.1| GTP-binding protein HflX [Frankia sp. CcI3] Length = 486 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 14/192 (7%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ +T E K + VA+ G TNAGKS+L+NR GA V + T V Sbjct: 247 ELAAMTTVRETKRSARRRGEVPSVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTV 306 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVN 118 R DT G + H+++ R + + AD++ VVD S E Sbjct: 307 RRATLPDGRAFTLTDTVGFV--RHLPHQIVEAFRSTLEEVADADLILHVVDGSSPEPAAQ 364 Query: 119 I---HDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 I ++L +I ++++NK+D V+P + ++A VF VSA G G Sbjct: 365 ISAVREVLNDIDAGGVPELIVVNKVDAVEPTVVAGLRQLAPDAVF------VSARTGEGL 418 Query: 176 DDVLNYLCSTLP 187 +++ LC+ +P Sbjct: 419 AALVDALCARVP 430 >gi|313665711|ref|YP_004047582.1| tRNA modification GTPase TrmE [Mycoplasma leachii PG50] gi|312949836|gb|ADR24432.1| tRNA modification GTPase TrmE [Mycoplasma leachii PG50] Length = 452 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 NS A+VG TN GKS+++N + +IVT TTR IV G ++ + + +DT Sbjct: 214 NSEGIKTAIVGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTA 273 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL----LKEIAKRSSRLI 134 GI D L I S + I AD+V VV+ K NI+DL + E+ K + I Sbjct: 274 GIRKTSDVVENLGILKSKNLINEADLVLFVVN-----KENINDLDNQEIFELLKNKTY-I 327 Query: 135 LILNK 139 LI+NK Sbjct: 328 LIVNK 332 >gi|293400643|ref|ZP_06644788.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305669|gb|EFE46913.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 438 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 8/168 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG VA+VG N GKST+ NR +G + SIV TR + G + +DT GI Sbjct: 5 SGIVAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTKEFRVIDTGGIQ 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNKI 140 A + + + I AD + VV+ +E N + + + +RS ++IL +NK+ Sbjct: 65 LADQPFREEINMQVEIAIDEADTILFVVNG-KEGITNDDEYIARLLQRSQKKVILAVNKV 123 Query: 141 -DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + + + E + + VS G G D+L+ + ++ P Sbjct: 124 DDFAQSDSIYEFYNLG-----LSDPIAVSGAHGIGIGDILDAIVNSFP 166 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 16/150 (10%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 KD+ D CV +G N GKS+LVN + + IV++ TTR + + + Sbjct: 170 QKDY--DGMTRFCV--IGRPNVGKSSLVNALLNQERVIVSNIEGTTRDAIDTPFKREGKE 225 Query: 72 IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA- 127 V +DT GI Y K + + S I+ +D+V +V+D I D K +A Sbjct: 226 YVVIDTAGIRKRGKVYENIEKYSVLRAMSAIERSDVVLVVIDGES----GIRDQDKHVAG 281 Query: 128 ---KRSSRLILILNKIDCV-KPERLLEQAE 153 + +I++ NK D V K E+ + + E Sbjct: 282 FAHEAGKGVIIVYNKWDAVEKDEKTMNRIE 311 >gi|290475995|ref|YP_003468891.1| GTP-binding protein, essential for cell growth [Xenorhabdus bovienii SS-2004] gi|289175324|emb|CBJ82127.1| GTP-binding protein, essential for cell growth [Xenorhabdus bovienii SS-2004] Length = 496 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ + H + K + R L+ NK D + Sbjct: 64 EDGVETHMAAQSLMAIEEADIVLFMVDARSGMMPADHAIAKHLRSREKATFLVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + + + + + + ++A+ G G ++ ++ LP + Sbjct: 124 DTDTAIPEF----YSLGLGDIYSIAASHGRGVTQLIEHVL--LPFS 163 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 6/162 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + + +DT G+ Sbjct: 212 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYILIDTAGVRKRG 271 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L+VD+ + LL I L++ +NK D Sbjct: 272 KVTETVEKFSVIKTLQAIEDANVVLLIVDAREGVSDQDLSLLGFILNSGRSLVIAVNKWD 331 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN 180 + E ++ + +L F++ + +SA G G ++ + Sbjct: 332 GMSQEDRDHVKDMLDLRLGFVDFARVHFISALHGSGVGNLFD 373 >gi|229826871|ref|ZP_04452940.1| hypothetical protein GCWU000182_02255 [Abiotrophia defectiva ATCC 49176] gi|229788489|gb|EEP24603.1| hypothetical protein GCWU000182_02255 [Abiotrophia defectiva ATCC 49176] Length = 455 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+ +N G +V+IVT TTR + VS + + +DT GI + Sbjct: 223 IVGKPNVGKSSFLNYISGEEVAIVTDIPGTTRDALLQNVSLGDISLNIVDTAGIRETDNE 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ I + + AD+V +++D + L +LL EI +S + +LILNK D E Sbjct: 283 IERMGIERAKEHLSDADLVLMIIDVSKPLSTEDKELLAEI--KSKKTVLILNKTDL---E 337 Query: 147 RLLEQAE 153 R L E Sbjct: 338 RGLTDEE 344 >gi|50123364|ref|YP_052531.1| tRNA modification GTPase TrmE [Pectobacterium atrosepticum SCRI1043] gi|81643492|sp|Q6CYQ9|MNME_ERWCT RecName: Full=tRNA modification GTPase mnmE gi|49613890|emb|CAG77342.1| probable tRNA modification GTPase [Pectobacterium atrosepticum SCRI1043] Length = 454 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTAIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LILILNKID 141 D ++ I +W I+ AD V +VD + E R + + ++ NK D Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E IA+ V +SA G G D + ++L ++ Sbjct: 339 VTG-----ETLGIAD--VNTHSLIRLSARTGEGVDTLRDHLKQSM 376 >gi|227113121|ref|ZP_03826777.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 454 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LILILNKID 141 D ++ I +W I+ AD V +VD + E R + + ++ NK D Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +E+ V +SA G G D + ++L ++ Sbjct: 339 VTGETLGIEE-------VNTHSLIRLSARTGEGIDTLRDHLKQSM 376 >gi|159232408|emb|CAM96592.1| putative GTPase [Streptomyces ambofaciens] Length = 481 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL G TNAGKS+L+NR GA V + T + VR + DT G Sbjct: 263 SVALAGYTNAGKSSLLNRLTGAGVLVENALFATLDTTVRRATTPSGRPYTIADTVGFVRH 322 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIAKRSSRLILILNK 139 + R + + A +V VVD SH + ++ ++L+++ S ++++NK Sbjct: 323 LPHHLVEAFRSTIEEVADAHLVLHVVDGSHPDPGAQLASVREVLRDVGAGESTEVVVVNK 382 Query: 140 IDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D P+ RLLEQ A +VSA G G D++ + LP Sbjct: 383 ADVADPDVLARLLEQEPDA---------IVVSARSGRGIDELRELIDRLLP 424 >gi|120554059|ref|YP_958410.1| GTP-binding protein EngA [Marinobacter aquaeolei VT8] gi|166225823|sp|A1TZQ4|DER_MARAV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120323908|gb|ABM18223.1| small GTP-binding protein [Marinobacter aquaeolei VT8] Length = 473 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 13/167 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V TR G + + + + +DT G+ Sbjct: 4 VIALVGRPNVGKSTLFNQMTRSRDALVADFPGLTRDRKYGEGNYEGQKFIVIDTGGLTGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 + M R S ++ ADIV +VD L I D L++ K++ L++NK Sbjct: 64 EAGIDAEMARQSMQAVEEADIVLFLVDGRAGLTAGDEMIADYLRKSGKQAH---LVVNKT 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D P+ + A+ + + E TF+++A G +L+ L + LP Sbjct: 121 DGQDPD--VAAADFYS--LGFESTFLIAAAHNRG---ILSLLEALLP 160 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 + +VG N GKSTLVNR +G +V TTR V + + +DT G+ Sbjct: 179 IGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYERQGHEYTLIDTAGVRRRK 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N +++ K I + I A +V LV+D+ L L+ + L++ +NK D Sbjct: 239 NVREAVEKFSIIKTLQAIDDAHVVILVIDAREGLVDQDLHLIGFVLDAGRSLVIAINKWD 298 Query: 142 CVKPE---RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + PE R+ EQ +A +L F++ + +SA G G Sbjct: 299 GMDPEDRDRVKEQ--VARRLDFLDYADKYYISALHGTGV 335 >gi|281423258|ref|ZP_06254171.1| tRNA modification GTPase TrmE [Prevotella oris F0302] gi|281402594|gb|EFB33425.1| tRNA modification GTPase TrmE [Prevotella oris F0302] Length = 454 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 7/119 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TN GKSTL+N + +IV++ TTR ++ K F+DT GI K Sbjct: 224 VAIIGKTNVGKSTLLNCLLHEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRETK 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKID 141 D +L I ++ I A IV V D E IH L E +L+L+ NK+D Sbjct: 284 DVVEQLGIERAYKKISEATIVLWVADEQPTTEEYTEIHQLTAE-----KKLLLVFNKMD 337 >gi|257468935|ref|ZP_05633029.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] gi|317063183|ref|ZP_07927668.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] gi|313688859|gb|EFS25694.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 441 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS+LVNR G + +IV+ TTR + IV K+++ + +DT GI Sbjct: 179 LAIIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTIVQYKDNKYMIIDTAGIRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++S + + TIK AD+ L++D L + A+ +++++NK D Sbjct: 239 KVEESLEYYSVLRAIKTIKRADVCILMLDGKEGLTEQDKRIAGIAAEELKPIVVVVNKWD 298 Query: 142 CV 143 V Sbjct: 299 LV 300 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 9/122 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG +++IV TR + + V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDRIAIVDDMPGVTRDRLYRETEWNGVEFVVVDTGGLEPRN 64 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILNK 139 + + I+ + + AD++ VVD K ++ L +EIA K+ +IL +NK Sbjct: 65 NEFMMTKIKEQAEVAMNEADVILFVVDG----KSGVNPLDEEIAYILRKKQKPIILCVNK 120 Query: 140 ID 141 ID Sbjct: 121 ID 122 >gi|51473927|ref|YP_067684.1| tRNA modification GTPase TrmE [Rickettsia typhi str. Wilmington] gi|81389958|sp|Q68VZ0|MNME_RICTY RecName: Full=tRNA modification GTPase mnmE gi|51460239|gb|AAU04202.1| thiophene and furan oxidation protein; tRNA modification GTPase [Rickettsia typhi str. Wilmington] Length = 445 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 16/150 (10%) Query: 10 NEHKDFVQDNSRSGCV------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 NE +++ DN R + A++G N GKS+L+N + ++IV++ TTR I+ G Sbjct: 197 NEISNYLNDNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQRNIAIVSNIAGTTRDIIEG 256 Query: 64 IVSEKESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-ELKVN--I 119 + I+ DT GI + D + I+ + ++ K A+I ++ D+ + +L +N I Sbjct: 257 HLDIGGYPIILQDTAGIRAESTDIIEREGIKRAINSAKTANIKIIMFDAEKLDLSINNDI 316 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLL 149 DL+ E I+I+NKID ++P ++ Sbjct: 317 IDLIDE------NTIVIINKIDLIEPSQIF 340 >gi|114049515|ref|YP_740065.1| tRNA modification GTPase TrmE [Shewanella sp. MR-7] gi|123030127|sp|Q0HPE7|MNME_SHESR RecName: Full=tRNA modification GTPase mnmE gi|113890957|gb|ABI45008.1| tRNA modification GTPase trmE [Shewanella sp. MR-7] Length = 453 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 VVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D+ ++ I +W+ I AD V +VD V+ HD+ + R + + ++ NK D Sbjct: 278 DTVEQIGIERAWNEINSADRVLFMVDGTTTDAVDPHDIWPDFINRLPANLGVTVVRNKAD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E L E + + +SA G G +++ +L S + Sbjct: 338 LTG-ENLAMTEEKGYSV------YRISAKTGLGVEELKQHLKSLM 375 >gi|330447275|ref|ZP_08310925.1| tRNA modification GTPase TrmE [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491466|dbj|GAA05422.1| tRNA modification GTPase TrmE [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 455 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 14/163 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+HAD V +VDS + ++ + +R L +I NK + Sbjct: 280 DEVERIGIERAWDEIEHADRVLFMVDSTTTDATDPKEIWPDFIERLPADMGLTVIRNKAE 339 Query: 142 CVKPERLLEQAEI--ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 EQ I AN I +SA G G D + +L Sbjct: 340 LTG-----EQTGICHANNPTLIR----LSARTGDGVDALREHL 373 >gi|315168440|gb|EFU12457.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1341] Length = 465 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 13/160 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGPPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + +D++ LV++ EL LL+ A + + +++LNK Sbjct: 285 IRETEDIVERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLE--ATKGLKRVILLNK 342 Query: 140 IDC---VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D + P L E LV E+ VS G D Sbjct: 343 MDLPTKLDPNELQE-------LVPAEEILSVSVLSNTGLD 375 >gi|301613774|ref|XP_002936375.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Xenopus (Silurana) tropicalis] Length = 491 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 19/205 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L GATNAGKS+L+N +IV+ TTR +V +++ ++ DT G+ +++ Sbjct: 244 LVLAGATNAGKSSLLNLTSQKPAAIVSPIPGTTRDVVETVLNIGGYPVIMSDTAGLRDSE 303 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE--LKVNIHDLLKEIAKRSS------RLILI 136 D K +R + + +ADI+ VVD+ + +++I LK + S ++L+ Sbjct: 304 DPVEKEGVRRAKERLDNADILIAVVDASKVPITRISILAHLKSLLSFPSSEGKLREVLLV 363 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNK D + P + E+ F+ S G G D + L L + Sbjct: 364 LNKSDLLDPPGHAKVQELCKDPELPTACFL-SCQTGQGVGDFIYILKQKL---------E 413 Query: 197 QISDLPMFHFTAEITREKLFLHLHK 221 +I P+ H +T+ + LHL+K Sbjct: 414 KICGDPL-HGAPSLTQTRHRLHLNK 437 >gi|271501567|ref|YP_003334593.1| ribosome-associated GTPase EngA [Dickeya dadantii Ech586] gi|270345122|gb|ACZ77887.1| ribosome-associated GTPase EngA [Dickeya dadantii Ech586] Length = 498 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 56/120 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + ++ + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + + R L+ NK+D + Sbjct: 64 EDGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADYAIAQHLRSREKDTFLVANKVDGI 123 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + V +DT G+ Sbjct: 213 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGRDYVLIDTAGVRKRG 272 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 273 KITDTVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 332 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + E + +L FI+ + +SA G G ++ Y CST Sbjct: 333 GLTQEVKDQVKETLDLRLGFIDFARIHFISALHGSGVGNLFESVNEAYECST 384 >gi|117918464|ref|YP_867656.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3] gi|166991117|sp|A0KR31|MNME_SHESA RecName: Full=tRNA modification GTPase mnmE gi|117610796|gb|ABK46250.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3] Length = 453 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 VVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D+ ++ I +W+ I AD V +VD V+ HD+ + R + + ++ NK D Sbjct: 278 DTVEQIGIERAWNEINSADRVLFMVDGTTTDAVDPHDIWPDFINRLPANLGVTVVRNKAD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E L E + + +SA G G +++ +L S + Sbjct: 338 LTG-ENLAMTEEKGYSV------YRISAKTGLGVEELKQHLKSLM 375 >gi|262066723|ref|ZP_06026335.1| ribosome-associated GTPase EngA [Fusobacterium periodonticum ATCC 33693] gi|291379522|gb|EFE87040.1| ribosome-associated GTPase EngA [Fusobacterium periodonticum ATCC 33693] Length = 441 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 78/145 (53%), Gaps = 10/145 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +G++ F E +D ++ +A++G NAGKS+LVN+ G++ +IV+ TTR + Sbjct: 164 IGKMDFPEEDEDVLK-------LAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAID 216 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ K+++ + +DT GI ++S + + +IK AD+ L++D+ L Sbjct: 217 TLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKSIKRADVCILMLDAKEGLTEQD 276 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + A+ +I+++NK D V+ Sbjct: 277 KRIAGIAAEELKPIIVVMNKWDLVE 301 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL N +G K++IV + TR + S+ V +DT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLIGDKIAIVDNLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L EIA K++ +IL + Sbjct: 65 NDF--LMTKIKEQAEVAMNEADVILFVVDG----KAGLNPLDDEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|242309125|ref|ZP_04808280.1| GTP-binding protein engA [Helicobacter pullorum MIT 98-5489] gi|239524166|gb|EEQ64032.1| GTP-binding protein engA [Helicobacter pullorum MIT 98-5489] Length = 461 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 5/153 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A++G NAGKS+L NRF ++++I + TTR + + + ++ + LDT GI + Sbjct: 6 GSIAIMGRPNAGKSSLFNRFCKSRIAITSEVAGTTRDVKKANILILDTPFLLLDTGGI-D 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS + S ++AD++ +VD + + K++ + L++NKID Sbjct: 65 QSDSLFAKVSEHSHLAGENADLILYLVDGKMPPNEIDKKIFYSLQKKNPNVFLVVNKIDN 124 Query: 143 VKP-ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 K E+ E AE + +F VS +G G Sbjct: 125 EKEQEKAWEFAEFGTQNLFF---ISVSHNRGIG 154 Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 10/156 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + ++G N GKS+L+N + + S+V+ TT V + ++ F+DT GI Sbjct: 200 IGIIGRVNVGKSSLLNALLKQERSVVSEVAGTTIDPVDEKGEIEGRRVNFVDTAGIRRRG 259 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNK 139 + K + + +K DIV LV+D+ + EL I L+ E +I++LNK Sbjct: 260 KIEGLEKFALNRTREVLKRTDIVILVLDASKPFVELDEKIAGLIDEF---KLGVIVVLNK 316 Query: 140 IDCVKPE--RLLEQAEIANKLVFIEKTFMVSATKGH 173 D + +LE + K + +SA G Sbjct: 317 WDIAYKDYKAILEDFRLRFKFLEYAPILTISAKNGR 352 >gi|122700697|emb|CAL87937.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNSNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K + A + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKE----KDRAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|229164435|ref|ZP_04292363.1| tRNA modification GTPase mnmE [Bacillus cereus R309803] gi|228619040|gb|EEK75938.1| tRNA modification GTPase mnmE [Bacillus cereus R309803] Length = 458 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 14/180 (7%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D + ER+ E + N+++ S + G D++ N + L + SAD Sbjct: 336 TDLPQAIDMERVTELSA-GNRVI------TTSLIEEQGIDELENAIAE-LFFEGTIDSAD 387 >gi|205422392|sp|Q0AE55|MNME_NITEC RecName: Full=tRNA modification GTPase mnmE Length = 451 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+NR G +++IVT TTR +R + + + +DT G+ Sbjct: 218 VVLTGQPNVGKSSLLNRLAGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + I +++ I+ AD+V L+VD + H +L + K ++ + NKID Sbjct: 278 DIVEQHGIARAYAAIEQADLVLLLVDGRYGVTKEDHSVLARLPKELP-VLTVHNKID 333 >gi|307729255|ref|YP_003906479.1| GTP-binding proten HflX [Burkholderia sp. CCGE1003] gi|307583790|gb|ADN57188.1| GTP-binding proten HflX [Burkholderia sp. CCGE1003] Length = 390 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 20/165 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFN 82 V+LVG TNAGKSTL N A+ T + R + + ++ Q+V DT G Sbjct: 192 SVSLVGYTNAGKSTLFNALTKAQAYAANQLFATLDTTSRRVYLGDEAGQVVVSDTVGFI- 250 Query: 83 AKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILI 136 ++ H+L+ R + HAD++ VVD+ ++++ ++++L I + R +L+ Sbjct: 251 -RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNEVLHAIGADTIRQVLV 309 Query: 137 LNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID V PE +E+ E N I + F+ SA G G D Sbjct: 310 FNKIDAV-PELAARGEAVERDEYGN----ISRVFL-SARTGQGLD 348 >gi|315453615|ref|YP_004073885.1| putative thiophene and furan oxidation protein [Helicobacter felis ATCC 49179] gi|315132667|emb|CBY83295.1| putative thiophene and furan oxidation protein [Helicobacter felis ATCC 49179] Length = 457 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 3/135 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 C+ LVG N GKS+L+N + ++V+ TTR + + + + +DT GI A Sbjct: 220 CLGLVGKPNVGKSSLLNALLLKDRALVSSIAGTTRDTIEEYLELQGISLKLIDTAGIRTA 279 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D+ +L I S +++ +DIV + D L+ ++ + + + +I++ NK DC Sbjct: 280 QDAIEQLGIAKSLKSLQESDIVLAIFDLSTPLESQDRQVIALLLEHAKNIIVVFNKSDC- 338 Query: 144 KPERLLEQAEIANKL 158 P +L Q E+ N L Sbjct: 339 -PAQLDTQ-EVLNLL 351 >gi|290968160|ref|ZP_06559705.1| tRNA modification GTPase TrmE [Megasphaera genomosp. type_1 str. 28L] gi|290781835|gb|EFD94418.1| tRNA modification GTPase TrmE [Megasphaera genomosp. type_1 str. 28L] Length = 459 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 9/177 (5%) Query: 21 RSGCVALV-GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++ G NAGKS+L+NR + +IVT TTR ++ ++ +DT G Sbjct: 221 RDGITVVINGLPNAGKSSLLNRLLEEDKAIVTEVPGTTRDVIEAWITLSGIPFCLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + + S + ADI+ LV+D +L+ LL+EI +++ +ILNK Sbjct: 281 IRKTDDKVERIGVAKARSYMDTADIILLVLDGSHKLQEEEKALLQEIKDKTA--WVILNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D L+++ EI + + +SA G G + + L + W AD Sbjct: 339 SDI---SSLMDKKEIEAYGIPV---LSLSARTGKGIEALQKTLLRYVLSKGWDTGAD 389 >gi|158520121|ref|YP_001527991.1| tRNA modification GTPase TrmE [Desulfococcus oleovorans Hxd3] gi|158508947|gb|ABW65914.1| tRNA modification GTPase TrmE [Desulfococcus oleovorans Hxd3] Length = 462 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + R V + G NAGKSTL+NR +G ++V+ TTR +V G V + VF DT Sbjct: 221 EAGRGATVVIAGPPNAGKSTLLNRLLGTDRALVSEIPGTTRDLVDGRVWVSGTPFVFTDT 280 Query: 78 PGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 G+ ++ D+ + + + + + AD++ VVD+ + L E + + +++ Sbjct: 281 AGLRPDSGDAVEAMGMARARTAMDQADLILFVVDAAAGMGPESGALFCEASAKP--FVVV 338 Query: 137 LNKID 141 NK D Sbjct: 339 ANKSD 343 >gi|326561737|gb|EGE12072.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 7169] Length = 466 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 23/180 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR + + + DT G+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE--------------LKVNIHDLLKEIAKRS 130 D K+ I+ ++ I+ AD++ +V D E + ++ D++++ Sbjct: 283 DHVEKIGIKRAFDAIRQADVLMMVYDLTTETDPLALADQLFCEGVTEDVGDIIRQ----- 337 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +LIL+ NK D + + +L +++ + + K VS G G D+++ L + P Sbjct: 338 -KLILVANKSDLLVSKPVL---QVSCETKSVPKLVYVSCETGEGLDELIEILTQKVGFHP 393 >gi|122702221|emb|CAL88301.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER+ + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERVYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|113972266|ref|YP_736059.1| tRNA modification GTPase TrmE [Shewanella sp. MR-4] gi|123324470|sp|Q0HD65|MNME_SHESM RecName: Full=tRNA modification GTPase mnmE gi|113886950|gb|ABI41002.1| tRNA modification GTPase trmE [Shewanella sp. MR-4] Length = 453 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 VVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTT 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D+ ++ I +W+ I AD V +VD V+ HD+ + R + + ++ NK D Sbjct: 278 DTVEQIGIERAWNEINSADRVLFMVDGTTTDAVDPHDIWPDFIDRLPANLGVTVVRNKAD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E L E + + +SA G G +++ +L S + Sbjct: 338 LTG-ENLAMTEEKGYSV------YRISAKTGLGVEELKQHLKSLM 375 >gi|317014865|gb|ADU82301.1| tRNA modification GTPase TrmE [Helicobacter pylori Gambia94/24] Length = 450 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 3/142 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V++ TTR + Sbjct: 193 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSNIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKIDCV 143 L+ + + I++LNK D V Sbjct: 313 LMDTLNRAKKPCIVVLNKNDLV 334 >gi|294783341|ref|ZP_06748665.1| ribosome-associated GTPase EngA [Fusobacterium sp. 1_1_41FAA] gi|294480219|gb|EFG27996.1| ribosome-associated GTPase EngA [Fusobacterium sp. 1_1_41FAA] Length = 441 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +++ +A++G NAGKS+LVN+ G++ +IV+ TTR + ++ K+++ + Sbjct: 168 DFPEEDEDVLKLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYM 227 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT GI ++S + + +IK AD+ L++D+ L + A+ Sbjct: 228 IIDTAGIRRKSKVEESLEYYSVLRALKSIKRADVCILMLDAKEGLTEQDKRIAGIAAEEL 287 Query: 131 SRLILILNKIDCVK 144 +I+++NK D V+ Sbjct: 288 KPIIVVMNKWDLVE 301 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL N +G K++IV TR + S+ V +DT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLIGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L EIA K++ +IL + Sbjct: 65 NDF--LMTKIKEQAEVAMNEADVILFVVDG----KAGLNPLDDEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|218262398|ref|ZP_03476878.1| hypothetical protein PRABACTJOHN_02553 [Parabacteroides johnsonii DSM 18315] gi|218223401|gb|EEC96051.1| hypothetical protein PRABACTJOHN_02553 [Parabacteroides johnsonii DSM 18315] Length = 437 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR + +IV + TTR G V + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRQAIVNEEAGTTRDRQYGKVEWTSKEFSLIDTGGWVINS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILILNK 139 D + + + + ++ AD++ VVD + DL E+A +R+ + +I++ NK Sbjct: 65 DDVFEEEINKQVKIALEEADVILFVVDVLN----GVTDLDNEVAAILRRAKKPVIVVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + L + + F VSA G D+L+ + +TLP Sbjct: 121 ADNFE----LHPSSAEFYSFGLGDPFCVSAINGSCTGDLLDKIVATLP 164 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A++G NAGKS+L+N F+G IVT TTR + ++ +DT GI Sbjct: 178 IAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKKG 237 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ ++ S I+++D+ L++D+ R ++ ++ + K L++ +NK Sbjct: 238 KVNEDLEYYSVI--RSIRAIENSDVCVLMLDATRGIESQDLNIFSLVQKNKKGLVVCVNK 295 Query: 140 IDCVK 144 D V+ Sbjct: 296 WDLVE 300 >gi|237737857|ref|ZP_04568338.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229419737|gb|EEO34784.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 440 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS+LVNR G + +IV+ TTR + IV E + + +DT GI Sbjct: 179 LAIIGKPNAGKSSLVNRLAGEERTIVSDIAGTTRDAIDTIVEFDEKKYMIIDTAGIRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++S + + TIK AD+ L++D L + A+ +I+++NK D Sbjct: 239 KVEESLEYYSVLRAIKTIKRADVCLLMLDGKEGLSEQDKRIAGIAAEELKPIIVVVNKWD 298 Query: 142 CV 143 V Sbjct: 299 LV 300 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG +V+IV TR + ++ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDRVAIVDDMPGVTRDRLYRETEWNGTEFVVVDTGGLEPRN 64 Query: 85 DSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILNK 139 + + I+ + AD++ VVD K ++ L +EIA K++ +IL +NK Sbjct: 65 NDFMMTKIKQQAEVAMNEADVILFVVDG----KCGVNPLDEEIAYILRKKNKPIILCVNK 120 Query: 140 ID 141 ID Sbjct: 121 ID 122 >gi|120610115|ref|YP_969793.1| GTP-binding protein EngA [Acidovorax citrulli AAC00-1] gi|166224298|sp|A1TM31|DER_ACIAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120588579|gb|ABM32019.1| small GTP-binding protein [Acidovorax citrulli AAC00-1] Length = 447 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR ++ +IV TR G + + + +DT G + Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKLGKHEYIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A ++ M + + + AD+V VVD+ L HD+ + + +L+ NK + Sbjct: 64 ASSGIYREMAKQTQQAVAEADVVIFVVDARAGLSAQDHDIANYLRRLGKPCLLVGNKAEG 123 Query: 143 VKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++ +L E E+ + + VSA G G +L TL L Sbjct: 124 MREGVQLAEFYELG-----LGEVLPVSAAHGQGVRSMLESALDTLQL 165 Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTL+N ++G + + TTR + Q +DT G+ Sbjct: 182 LAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQQFELIDTAGLRRKG 241 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L++D+ + + + I + ++L +NK D Sbjct: 242 KVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAVNKWD 301 Query: 142 CVK--PERLLEQAEIANKLVFIE--KTFMVSATKGHG 174 V ++LE++ I +L F++ +SA K G Sbjct: 302 AVDDYGRQMLERS-IETRLSFLKFASLHFISAKKRQG 337 >gi|111017940|ref|YP_700912.1| GTP-binding protein EngA [Rhodococcus jostii RHA1] gi|110817470|gb|ABG92754.1| GTP-binding protein [Rhodococcus jostii RHA1] Length = 475 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + + + DT G Sbjct: 40 TLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWSGRRFMVQDTGGWEPD 99 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + R + ++ AD + LVVD+ + K + + + ++L+ NK+D Sbjct: 100 AKGLQQSVARQAELAMQTADAILLVVDAVVGATATDEAVAKVLRRSKTPVLLVANKVDDG 159 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E +E+A + + VSAT G G D+L+ + + LP P Sbjct: 160 RTE-----SEVAALWSLGLGQPHSVSATHGRGTGDLLDEVLAALPETP 202 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 12/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G + S+V + TT V IV F+DT G+ Sbjct: 214 VALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKRV 273 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + Y L + S I+ A++ L++D+ + +L +A L++ N Sbjct: 274 SHASGAEFYASLRTK---SAIEAAEVAILLIDASEPISEQDLRVLSMVADAGRALVIAFN 330 Query: 139 KIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 K D V +R L+ E+ LV + + +SA G ++ L + L Sbjct: 331 KWDLVDEDRRLQLDREVDRDLVRVPWAQRVNISAQTGRAVQKLVPALDTAL 381 >gi|85714095|ref|ZP_01045084.1| tRNA modification GTPase [Nitrobacter sp. Nb-311A] gi|85699221|gb|EAQ37089.1| tRNA modification GTPase [Nitrobacter sp. Nb-311A] Length = 456 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 17/178 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G NAGKSTL+NR V + +IV+ TTR I+ + + +DT GI Sbjct: 221 IAITGPPNAGKSTLLNRLVRREAAIVSPHAGTTRDIIEAYLDLDGYPVTLIDTAGIRETD 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + +R + AD+V + D + DL I L L+ NKID Sbjct: 281 DPVEQEGMRRARDRAASADLVLWLSDGE------MADLDPTIRVGDCSLWLVRNKIDLSG 334 Query: 145 PER---LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 PE Q E + F VSA +G G DD++ L V++ D++ Sbjct: 335 PENDEANPRQRETTTARGSRVRRFRVSARRGDGLDDLVAALT--------VFAGDRLG 384 >gi|116620165|ref|YP_822321.1| GTP-binding protein EngA [Candidatus Solibacter usitatus Ellin6076] gi|116223327|gb|ABJ82036.1| small GTP-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 441 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKSTL+N GA +IV+ TTR V VS + VF+DT GI Sbjct: 184 VAIIGRPNVGKSTLLNALTGADRAIVSPIAGTTRDAVDETVSHDGQEYVFVDTAGIRRKG 243 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKI 140 D KL + ++ I+ A +V LV+D+ E V + + A R ++I +NK Sbjct: 244 KTHDMAEKLSVVMARRHIRMAHVVLLVLDA-TEGVVALDTTIAGYAHEGGRAVIICVNKW 302 Query: 141 DCVKPERLLEQAEIANKL 158 D VK + ++ E ++ Sbjct: 303 DEVKGQAAQKKNEFEQQI 320 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 5/161 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V +VG N GKSTL NR G + +IV + TR + G +DT GI Sbjct: 7 TVVIVGRPNVGKSTLFNRITGQRRAIVGDEPGITRDRLHGAAEHDGRHFELIDTGGIVVH 66 Query: 84 KDSYHKLMI-RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y I + + +K AD + +VD E+ + DL + + K + L +NKID Sbjct: 67 DQEYIPAQILKQAEFALKAADHIIFLVDGRAEITGSDRDLAQMLKKLGKPVSLAVNKIDA 126 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + L+ + + I F +SA G G D +L+ + Sbjct: 127 QVRQDLVNEF----YGLGIADVFAISAEHGTGVDAMLDRVT 163 >gi|122701657|emb|CAL88218.1| GTPase [Helicobacter pylori] gi|242255818|gb|ACS88893.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F VS + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNVSVSHNRGISALIDAILSALNLNP 170 >gi|238794826|ref|ZP_04638427.1| GTP-binding protein engA [Yersinia intermedia ATCC 29909] gi|238725839|gb|EEQ17392.1| GTP-binding protein engA [Yersinia intermedia ATCC 29909] Length = 495 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ E + + +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 270 KITETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 330 GMTEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCST 381 >gi|326569041|gb|EGE19110.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC1] Length = 466 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 23/180 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+NR G + +IVT TTR + + + DT G+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE--------------LKVNIHDLLKEIAKRS 130 D K+ I+ ++ I+ AD++ +V D E + ++ D++++ Sbjct: 283 DHVEKIGIKRAFDAIRQADVLMMVYDLTTETDPLALADQLFCEGVTEDVGDIIRQ----- 337 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +LIL+ NK D + + +L +++ + + K VS G G D+++ L + P Sbjct: 338 -KLILVANKSDLLVSKPVL---QVSCETKSVPKLVYVSCETGEGLDELIEILTQKVGFHP 393 >gi|238752471|ref|ZP_04613947.1| GTP-binding protein engA [Yersinia rohdei ATCC 43380] gi|238709320|gb|EEQ01562.1| GTP-binding protein engA [Yersinia rohdei ATCC 43380] Length = 494 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ E + + +DT G+ Sbjct: 209 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 269 KITEAVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 328 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 329 GMSEEARTQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCST 380 >gi|94987514|ref|YP_595447.1| tRNA modification GTPase TrmE [Lawsonia intracellularis PHE/MN1-00] gi|205415772|sp|Q1MPF1|MNME_LAWIP RecName: Full=tRNA modification GTPase mnmE gi|94731763|emb|CAJ55126.1| predicted GTPase [Lawsonia intracellularis PHE/MN1-00] Length = 459 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 27/234 (11%) Query: 13 KDFVQDNSRSGC------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 + + RS C VAL GA NAGKS+L+N +G + +IVT TTR + + Sbjct: 204 QKLIHAAERSRCWKEGVTVALAGAVNAGKSSLLNALLGKERAIVTEHPGTTRDFLEECII 263 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS----HRELKVNIHDL 122 I +DT G+ D + I+ I AD++ ++D E K+ I++ Sbjct: 264 VNSLSIRLIDTAGLRVTSDPIEEQGIQKGREKIDEADVILFIIDGTVGVTEESKLLINNF 323 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL--- 179 E R IL+ NK+D P + ++++ I VSA G G +++L Sbjct: 324 GVE------RTILVWNKVDLKVPPSNWTELYTSSQVSGI----CVSAKTGSGIEELLVLL 373 Query: 180 -NYLCSTLPLAPWVYSA--DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVV 230 N++ S + + + +F E R L+ + IPY C V Sbjct: 374 YNFVLSQHNAQEPTFDTIVPNMRQVEVFSLVLEEIR-SLYEDIRSGIPYDLCAV 426 >gi|28210831|ref|NP_781775.1| GTP-binding protein EngA [Clostridium tetani E88] gi|37999662|sp|Q895X8|DER_CLOTE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28203269|gb|AAO35712.1| GTP-binding protein [Clostridium tetani E88] Length = 438 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G +++IV TR + +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVEDTPGVTRDRIYAQAEWLNHNFTIIDTGGIEPES 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M R + I+ AD++ +VD L +++ + K ++L++NKID + Sbjct: 66 EDIIVAQMRRQAEMAIEMADVIMFIVDGKEGLTPADNEVALMLRKSKKPIVLVVNKIDRI 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + E N + I + +SA++ G D+L+ + P Sbjct: 126 EEEDNM--YEFYN--LGIGEPTTISASQALGLGDMLDKIVENFP 165 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 12/166 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKS+L+N+ +G + +IV++ TTR + + E + + +DT G+ Sbjct: 179 IAFVGKPNVGKSSLINKILGEERNIVSNIPGTTRDAIDSFLERDEDKFILIDTAGLRRRS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 KD + +++ I AD+ L++D+ + ++ + + L++++NK D Sbjct: 239 KVKDQIERYSTVRTYAAIDRADVCILLIDAEEGISEQDKKIIGYAHELNKALMVVVNKWD 298 Query: 142 CVKPE-----RLLEQAEIANKLVFIEKT--FMVSATKGHGCDDVLN 180 ++ E R + E+ ++L F+ +SA G VL+ Sbjct: 299 LIEKETNTMNRF--KKELQSELSFMSYAPYIFISAKTGQRVGKVLD 342 >gi|302346393|ref|YP_003814691.1| tRNA modification GTPase TrmE [Prevotella melaninogenica ATCC 25845] gi|302151216|gb|ADK97477.1| tRNA modification GTPase TrmE [Prevotella melaninogenica ATCC 25845] Length = 462 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 3/130 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+N + + +IV+ TTR ++ K F+DT GI + Sbjct: 232 VAIVGKTNVGKSTLLNCLLHEEKAIVSDIHGTTRDVIEDTTEIKGVTFRFIDTAGIRHTD 291 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D KL I ++ + A IV V+D + ++ +AK LI I NKID + Sbjct: 292 DQIEKLGIERAYQKMDEAAIVLWVIDEQPTAEECAE--MQRLAK-GKHLIAIFNKIDSKE 348 Query: 145 PERLLEQAEI 154 ER L E+ Sbjct: 349 TERKLLNDEL 358 >gi|51597153|ref|YP_071344.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 32953] gi|186896248|ref|YP_001873360.1| GTP-binding protein EngA [Yersinia pseudotuberculosis PB1/+] gi|81825749|sp|Q668A3|DER_YERPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691441|sp|B2K9P6|DER_YERPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51590435|emb|CAH22075.1| putative GTP-binding protein [Yersinia pseudotuberculosis IP 32953] gi|186699274|gb|ACC89903.1| small GTP-binding protein [Yersinia pseudotuberculosis PB1/+] Length = 495 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ + + + +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDDREYILIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 270 KITETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 330 GMTEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESVQEAYDCST 381 >gi|14521819|ref|NP_127295.1| GTP-binding protein Era related [Pyrococcus abyssi GE5] gi|5459039|emb|CAB50525.1| Hypothetical protein, possibly GTP-binding [Pyrococcus abyssi GE5] Length = 186 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 25/180 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE------------KESQI 72 VA++GA N GKSTL+N +G KVS V+ TT++ ++ + +I Sbjct: 4 VAIIGAENVGKSTLMNALIGGKVSEVSETPGTTKTTIKRYFGKVKIPKTMKNPYGGADEI 63 Query: 73 VFLDTPGIFNA-KDSYHKLMIRLSW----STIKHADIVCLVVDS----HRELKVNIHDLL 123 + +DT G+F+ K+ K++ + I AD++ ++D+ HR ++ +H +L Sbjct: 64 ILIDTAGLFDPEKEVRGKVLSEEKFKELIEEIVKADVIIHMIDATKGLHRGME-KLHYML 122 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 K + +I+++NKID V ER+ + EI K + E M S G +++L L Sbjct: 123 K--FRYEKPIIVVINKIDLVPRERIEKLKEIVKKRLEQEPILM-SLVTYEGFNELLKALA 179 >gi|86138474|ref|ZP_01057048.1| GTP-binding protein EngA [Roseobacter sp. MED193] gi|85824999|gb|EAQ45200.1| GTP-binding protein EngA [Roseobacter sp. MED193] Length = 489 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V + TR + G + + +DT G+ + Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLEDV 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-SSRLILILNKID 141 D S M RL+ + ADI ++D+ R + ++ EI +R S+ +IL NK + Sbjct: 64 TDNSLEGRMRRLTERAVDMADICLFMIDA-RTGVTPVDEMFAEILRRKSAHVILAANKAE 122 Query: 142 CVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + +LE + + + +S G G D+ + L PLA Sbjct: 123 GNAADAGVLEAYGLG-----LGEPLRLSGEHGEGMADLFSELA---PLA 163 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 22/188 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG NAGKSTL+N+ +G + + TR + + + + DT G+ A Sbjct: 206 VAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWSGTPMRIFDTAGMRKKA 265 Query: 84 K--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 K + KL + +K A++V +++D+ E+ DL + ++A+R R +++ +NK Sbjct: 266 KVLEKLEKLSVSDGLRAVKFAEVVVILLDA--EIPFEQQDLRIADLAEREGRAVVVAVNK 323 Query: 140 IDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 D K E+L E +L+ + VSA G G D DV N Sbjct: 324 WDVEDNKQEKLAALKEAFGRLLPQLRGAPLVTVSAKTGKGLDRLHAAVMRAYDVWNRRIP 383 Query: 185 TLPLAPWV 192 T L W+ Sbjct: 384 TAALNRWL 391 >gi|116749242|ref|YP_845929.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB] gi|189037168|sp|A0LJ92|DER_SYNFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116698306|gb|ABK17494.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 446 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 5/168 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR ++V TR VS + V +DT G Sbjct: 3 VVAIVGRPNVGKSTLFNRISKDNSALVDDLPGVTRDRNYARVSWNDKPFVIIDTAGFVGQ 62 Query: 84 KDSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 S + + R + ADI+ V D+ L +L + + S + +NKID Sbjct: 63 DTSAFEELTREQILLALDEADILLFVADAKTGLHPGDAELADLLRRSSKPVFYAVNKIDG 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + R AE + +++ + +SA G G ++++ LC+ +P AP Sbjct: 123 SEQRR--HAAEFFE--LGLDRIYPISAAHGFGISELMDDLCAAIPEAP 166 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 V+++G N GKSTLVN +GA IV+ TTR V + + + V +DT GI Sbjct: 181 VSILGRPNVGKSTLVNHLLGAPRVIVSPVPGTTRDAVDSHIVKAGQEYVLIDTAGIRRKG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K+ I + +++ + +V L++D+ + + I +RS I+ +NK D Sbjct: 241 RTREKLEKISIIKALQSVERSHVVVLLLDAVEGVTDQDLHIAGYIKERSRACIVGINKWD 300 Query: 142 CV 143 Sbjct: 301 AA 302 >gi|284050435|ref|ZP_06380645.1| GTP-binding protein EngA [Arthrospira platensis str. Paraca] gi|291569696|dbj|BAI91968.1| GTP-binding protein [Arthrospira platensis NIES-39] Length = 453 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D++ VA+VG N GKS+L+N F+G + +IV+ TTR + IV + +DT Sbjct: 172 DDNEELRVAIVGRPNVGKSSLLNTFLGQERAIVSPISGTTRDAIDTIVEHNGNTYRLVDT 231 Query: 78 PGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 GI K + I ++ I+ AD+V V+D+ + L IA + Sbjct: 232 AGIRRKKHVEYGAEFFGINRAFKAIRRADVVLFVIDAVEGVTDQDQKLAGRIADDGRACV 291 Query: 135 LILNKIDCVKPER--LLEQAEIA-NKLVFIEKTFM--VSATKGH 173 +++NK D V+ + +LE ++ ++L F++ M VSA G Sbjct: 292 IVVNKWDAVEKDSYTILEYEKVMRSRLYFLDWADMIFVSAMTGQ 335 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKSTLVNR + +IV + TR ++ + + +DT G +F+ Sbjct: 6 VAIIGRPNVGKSTLVNRLTQTQDAIVHDQPGMTRDRTYRSAYWQDREFIVVDTGGLVFDD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + + A LVVD + + ++ ++L +NK C Sbjct: 66 DTEFVPLIREQALMALAEATAAILVVDGQTGPTGGDEAIASWLRQQKVPILLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P + L QA +L + F +S+ G+G ++L+ L LP Sbjct: 124 SPTQGLTQAAQFWEL-GLGTPFPISSIHGNGTGELLDTLIEHLP 166 >gi|154498134|ref|ZP_02036512.1| hypothetical protein BACCAP_02115 [Bacteroides capillosus ATCC 29799] gi|150273124|gb|EDN00281.1| hypothetical protein BACCAP_02115 [Bacteroides capillosus ATCC 29799] Length = 441 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 16/181 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR VG ++SIV TR + + + +DT GI Sbjct: 5 VAIVGRPNVGKSMLFNRLVGQRLSIVEDTPGVTRDRIYAECEWRNRKFDIVDTGGIEPNT 64 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 DS M + I++AD+ V D L + ++ + + ++L +NK+D Sbjct: 65 DSEILSFMREQAEIAIRNADVTVFVCDIKSGLTASDQEVANMLLRSGKPVVLAVNKMD-- 122 Query: 144 KPERLLEQAEIANKLVF------IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 Q + N +F + VSA GHG D+L+ P V D Sbjct: 123 -------QVGMTNPDIFEFYNLGLGDPIAVSAVHGHGTGDLLDACFQYFPPEDQVEEQDD 175 Query: 198 I 198 + Sbjct: 176 V 176 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 9/128 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+L+NR +G + IV++ TTR + + + + +DT G+ Sbjct: 179 VAVIGKPNVGKSSLINRILGEERVIVSNMAGTTRDAIDSYYENDKGKYILIDTAGMRKKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 D K + + I+ D+ ++VD+ E + L E K I+++N Sbjct: 239 KVDDRIEKFSVLRATMAIERCDVCLIMVDAQEGVTEQDTKVAGLAHEAGKAC---IIVVN 295 Query: 139 KIDCVKPE 146 K D ++ + Sbjct: 296 KWDAIEKD 303 >gi|149913922|ref|ZP_01902454.1| Small GTP-binding protein domain [Roseobacter sp. AzwK-3b] gi|149812206|gb|EDM72037.1| Small GTP-binding protein domain [Roseobacter sp. AzwK-3b] Length = 495 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLEEA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D S M +L+ + AD+ ++D+ + L + + KR+ R+IL NK + Sbjct: 64 TDESLQGRMRKLTERAVDMADVCLFLIDARAGVTPTDEVLAEILRKRADRVILGANKAE 122 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 22/188 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N +G + + TR + + + DT G+ Sbjct: 209 VAVVGRPNAGKSTLINTILGEDRLLTGPEAGITRDAISLQIDWDGLPVRIFDTAGMRKKA 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 +D KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 269 RVQDKVEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVVVAVNK 326 Query: 140 --IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 I+ K ++L + E +L+ + VSA G G D DV N Sbjct: 327 WDIEDDKQQKLRDLRESFERLLPQLRGAPLVTVSAKTGKGLDRLRDAVAKAYDVWNRRVP 386 Query: 185 TLPLAPWV 192 T L W+ Sbjct: 387 TAQLNRWL 394 >gi|313112541|ref|ZP_07798206.1| tRNA modification GTPase TrmE [Faecalibacterium cf. prausnitzii KLE1255] gi|310625141|gb|EFQ08431.1| tRNA modification GTPase TrmE [Faecalibacterium cf. prausnitzii KLE1255] Length = 475 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKSTL+N G +IVT TTR +V V + Q+ DT G+ +D Sbjct: 244 AIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDIQLNLFDTAGLRETED 303 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + IR SW ++ A ++ V D +L + R + I ++NK D Sbjct: 304 AIEAEGIRRSWKKLEEAGLILAVFDGSEPPTREDLELAQRCTGRPA--IALINKED 357 >gi|122701635|emb|CAL88207.1| GTPase [Helicobacter pylori] gi|122701665|emb|CAL88222.1| GTPase [Helicobacter pylori] gi|122701667|emb|CAL88223.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F VS + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNVSVSHNRGISALIDAILSALNLNP 170 >gi|300741227|ref|ZP_07071248.1| ribosome-associated GTPase EngA [Rothia dentocariosa M567] gi|300380412|gb|EFJ76974.1| ribosome-associated GTPase EngA [Rothia dentocariosa M567] Length = 529 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST++NR +G + ++V K TR V + +DT G + Sbjct: 77 VVAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRFTLVDTGGWESD 136 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + ++ AD+V LVVD+ + + +++ + + +IL+ NKID Sbjct: 137 ARGIDAQVADQAEIAVEQADVVILVVDARVGITASDEQIVRMLRRVKKPIILMANKID-- 194 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + LE + + + + F VS G G D L+ L +P Sbjct: 195 --DSHLEPEIYSLWSLGMGQPFPVSGLHGRGLADALDELLEVMP 236 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 12/186 (6%) Query: 11 EHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 EH + Q + G VAL+G N GKS+L+N+ G++ ++V TTR + ++ Sbjct: 237 EHSQYAQPEAPGGPRRVALIGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDEVIELG 296 Query: 69 ESQIVFLDTPGIFN----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 F+DT GI AK + +R + ++ +++ +++D L +++ Sbjct: 297 GYPWRFIDTAGIRRRQHMAKGAEFYSSLRTQ-TALERSEVAVVLLDVSEPLSEQDVRIIQ 355 Query: 125 EIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 ++L NK D + ER +LE+ EI L ++ +SA G D ++ Sbjct: 356 TTIDSGRAMVLAFNKWDTLDEERRDMLER-EIDRDLAHVKWAPRVNISAKTGWHKDKLVP 414 Query: 181 YLCSTL 186 L +L Sbjct: 415 ALERSL 420 >gi|226360071|ref|YP_002777849.1| GTP-binding protein EngA [Rhodococcus opacus B4] gi|226238556|dbj|BAH48904.1| GTP-binding protein EngA [Rhodococcus opacus B4] Length = 475 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + + + DT G Sbjct: 40 TLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWSGRRFMVQDTGGWEPD 99 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + R + ++ AD + LVVD+ + K + + + ++L+ NK+D Sbjct: 100 AKGLQQSVARQAELAMQTADAILLVVDAVVGATATDEAVAKVLRRSKTPVLLVANKVDDG 159 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E +E+A + + VSAT G G D+L+ + + LP P Sbjct: 160 RTE-----SEVAALWSLGLGQPHSVSATHGRGTGDLLDEVLAALPETP 202 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 12/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G + S+V + TT V IV F+DT G+ Sbjct: 214 VALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKRV 273 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + Y L + S I+ A++ L++D+ + +L +A L++ N Sbjct: 274 SHASGAEFYASLRTK---SAIEAAEVAILLIDASEPISEQDLRVLSMVADAGRALVIAFN 330 Query: 139 KIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 K D V +R L+ E+ LV + + +SA G ++ L + L Sbjct: 331 KWDLVDEDRRLQLDREVDRDLVRVPWAQRVNISAQTGRAVQKLVPALDTAL 381 >gi|254511655|ref|ZP_05123722.1| GTP-binding protein EngA [Rhodobacteraceae bacterium KLH11] gi|221535366|gb|EEE38354.1| GTP-binding protein EngA [Rhodobacteraceae bacterium KLH11] Length = 487 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ +A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEGRLGDLRFTVIDTAGLEDA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS M RL+ + AD+ ++D+ L + + KRS +IL NK + Sbjct: 64 TDDSLQSRMRRLTERAVDMADVCLFMIDARVGLTPTDEMFAEILRKRSKHVILAANKAE 122 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 27/195 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-----IVFLDTPG 79 VA+VG NAGKSTL+N+ +G + + TR + V + + + DT G Sbjct: 200 VAVVGRPNAGKSTLINKIMGEDRLLTGPEAGITRDAISLRVDWADPEGGSTPMRIFDTAG 259 Query: 80 I---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LI 134 + ++ KL + +K A++V +++D+ + DL + ++A+R R ++ Sbjct: 260 MRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVV 317 Query: 135 LILNKIDC--VKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVL 179 L +NK D K E+L + E +L+ + VSA G G + DV Sbjct: 318 LAVNKWDVEDSKQEKLRDLKESFERLLPQLRGAPLITVSAKTGRGLERLRAAILRAHDVW 377 Query: 180 NYLCSTLPLAPWVYS 194 N T L W+ + Sbjct: 378 NRRVPTAALNRWLTA 392 >gi|94989793|ref|YP_597893.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10270] gi|94993678|ref|YP_601776.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10750] gi|166225863|sp|Q1JIH4|DER_STRPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225864|sp|Q1J8C9|DER_STRPF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94543301|gb|ABF33349.1| GTP-binding protein [Streptococcus pyogenes MGAS10270] gi|94547186|gb|ABF37232.1| GTP-binding protein [Streptococcus pyogenes MGAS10750] Length = 436 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + ++ AD++ VV S +E + + + +I R++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAQIAMEEADVIVFVV-SGKEGVTDADEYVSKILYRTNTPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCV 143 K D + Sbjct: 295 KWDTL 299 >gi|84684686|ref|ZP_01012586.1| GTP-binding protein EngA [Maritimibacter alkaliphilus HTCC2654] gi|84667021|gb|EAQ13491.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2654] Length = 481 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 5/161 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V ++ TR + G E + +DT G+ +A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGEARLGEMRFTVIDTAGLEDA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS M RL+ ++ AD ++D+ + + K+++ +IL NK + Sbjct: 64 TDDSLEGRMRRLTERAVEMADACLFLIDARAGVLPTDEIFADILRKKNAHVILAANKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + E I + + + +SA G G D+ L Sbjct: 124 ----KAGEAGMIEAWGLGLGEPIALSAEHGEGMGDLAAALA 160 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 28/170 (16%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G NAGKSTL+NR +G + + + TR + + DT G+ Sbjct: 196 VAVIGRPNAGKSTLINRLIGEERLLTGPEAGITRDSISLAFDWDGTPTRIFDTAGMRKKA 255 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 256 KVQEKLEKLSVADGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVVVAVNK 313 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTF-------------MVSATKGHGCD 176 D +AE KL + F +SA G G D Sbjct: 314 WDV--------EAEKQQKLKHLRDGFEKLLPQLRGAPLVTISAKTGRGMD 355 >gi|15674498|ref|NP_268672.1| GTP-binding protein EngA [Streptococcus pyogenes M1 GAS] gi|19745453|ref|NP_606589.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS8232] gi|50913661|ref|YP_059633.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10394] gi|56808746|ref|ZP_00366464.1| COG1160: Predicted GTPases [Streptococcus pyogenes M49 591] gi|71910101|ref|YP_281651.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS5005] gi|94987918|ref|YP_596019.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS9429] gi|94991802|ref|YP_599901.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS2096] gi|209558845|ref|YP_002285317.1| GTP-binding protein EngA [Streptococcus pyogenes NZ131] gi|54037054|sp|P64065|DER_STRP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040977|sp|P64064|DER_STRP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|68052093|sp|Q5XDR3|DER_STRP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225861|sp|Q1JDF1|DER_STRPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225862|sp|Q1JNC4|DER_STRPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058978|sp|B5XJW0|DER_STRPZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|13621599|gb|AAK33393.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes M1 GAS] gi|19747567|gb|AAL97088.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes MGAS8232] gi|50902735|gb|AAT86450.1| GTP-binding protein [Streptococcus pyogenes MGAS10394] gi|71852883|gb|AAZ50906.1| GTP-binding protein [Streptococcus pyogenes MGAS5005] gi|94541426|gb|ABF31475.1| GTP-binding protein [Streptococcus pyogenes MGAS9429] gi|94545310|gb|ABF35357.1| GTP-binding protein [Streptococcus pyogenes MGAS2096] gi|209540046|gb|ACI60622.1| GTP-binding protein EngA [Streptococcus pyogenes NZ131] Length = 436 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + ++ AD++ VV S +E + + + +I R++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAQIAMEEADVIVFVV-SGKEGVTDADEYVSKILYRTNTPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCV 143 K D + Sbjct: 295 KWDTI 299 >gi|327462129|gb|EGF08456.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1] Length = 457 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 9/132 (6%) Query: 18 DNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D +R G A++G N GKS+L+N + +IVT TTR ++ V+ K Sbjct: 212 DTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGV 271 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + +DT GI D ++ + S ++ AD+V LV+++ L LL EI++ S Sbjct: 272 PLKLIDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISQDS 330 Query: 131 SRLILILNKIDC 142 +R++L LNK D Sbjct: 331 NRIVL-LNKTDL 341 >gi|160890563|ref|ZP_02071566.1| hypothetical protein BACUNI_03006 [Bacteroides uniformis ATCC 8492] gi|270295703|ref|ZP_06201903.1| ribosome-associated GTPase EngA [Bacteroides sp. D20] gi|317479893|ref|ZP_07939009.1| ribosome-associated GTPase EngA [Bacteroides sp. 4_1_36] gi|156859562|gb|EDO52993.1| hypothetical protein BACUNI_03006 [Bacteroides uniformis ATCC 8492] gi|270273107|gb|EFA18969.1| ribosome-associated GTPase EngA [Bacteroides sp. D20] gi|316903940|gb|EFV25778.1| ribosome-associated GTPase EngA [Bacteroides sp. 4_1_36] Length = 437 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S +I++AD+ L+VD+ R ++ ++ I K + L++++NK Sbjct: 239 VNEDLEYYSVI--RSIRSIENADVCILMVDATRGIESQDLNIFSLIQKNAKGLVVVVNKW 296 Query: 141 DCVK 144 D VK Sbjct: 297 DLVK 300 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 14/187 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 N+ D + + + + + AD++ VVD + ++ + + I +R+ + ++L+ NK Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGV-TDLDEQVAAILRRAKKPVLLVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI- 198 D E E + + + + +SA G G D+++ + S +D+I Sbjct: 121 TD--NHELQYNAPEFYS--LGLGDPYCISAVTGSGTGDMMDLIVSKFK-----KESDEIL 171 Query: 199 -SDLPMF 204 D+P F Sbjct: 172 DEDIPRF 178 >gi|323342077|ref|ZP_08082310.1| ribosome-associated GTPase EngA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464502|gb|EFY09695.1| ribosome-associated GTPase EngA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 436 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 6/178 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VG N GKS+L NR +G ++SIV + TR + G + + F+DT GI Sbjct: 4 GVVAIVGRPNVGKSSLFNRIMGERISIVHDEAGVTRDRLYGKTTWLTKDLRFIDTGGIQM 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + I ADI+ VV + + + + + + + + +I+ NK+D Sbjct: 64 EGQPFQEEIKMQVDIAIDEADIILFVVSAKEGMTTDDEFIARLLRQTNKPVIIAANKVDD 123 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 V+ + E + ++ F VS G G D+L+ + LP D++S Sbjct: 124 VQFVSDIYEFYALG-----YDEPFAVSCEHGIGLGDLLDEVIKKLPQDGITMYEDELS 176 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 28 VGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSY 87 +G N GKS+LVN + IV++ TTR + E V +DT GI Y Sbjct: 180 IGRPNVGKSSLVNAMLNQDRVIVSNIEGTTRDAIDTPFRMNERDYVIIDTAGIRKRGKVY 239 Query: 88 ---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 K + + S I +D+V ++D ++ ++ + +I++ NK D V Sbjct: 240 EDVEKYSVLRAMSAIDRSDVVLFLIDGEAGIRAQDKHVVGFAHEAGKPIIIVYNKWDVVD 299 Query: 145 PE 146 E Sbjct: 300 KE 301 >gi|148981048|ref|ZP_01816268.1| predicted GTPase [Vibrionales bacterium SWAT-3] gi|145961024|gb|EDK26347.1| predicted GTPase [Vibrionales bacterium SWAT-3] Length = 435 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 12/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 200 VSLVGYTNAGKSTLFNRITSAGVYAADQLFATLDPTLRKIDLSDVGPAILADTVGFIRHL 259 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + ADI+ VVD+ RE +HD+L+EI ++++NKI Sbjct: 260 PHDLVAAFKATLQETQEADILLHVVDASDDRFRENIQAVHDVLEEIDAHEVPTLVVMNKI 319 Query: 141 DCVKPE--RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 DC++ + R+ E A + V+ VSA +G G + + L L Sbjct: 320 DCMEDQKPRIDRDEEGAPRAVW------VSAMEGEGIELLFEALTERL 361 >gi|323479218|gb|ADX78657.1| tRNA modification GTPase TrmE [Enterococcus faecalis 62] Length = 460 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 13/160 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 220 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + +D++ LV++ EL LL+ A + + +++LNK Sbjct: 280 IRETEDIVERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLE--ATKGLKRVILLNK 337 Query: 140 IDC---VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D + P L E LV E+ VS G D Sbjct: 338 MDLPTKLDPNELQE-------LVPAEEILSVSVLSNTGLD 370 >gi|306827971|ref|ZP_07461238.1| ribosome-associated GTPase EngA [Streptococcus pyogenes ATCC 10782] gi|304429890|gb|EFM32932.1| ribosome-associated GTPase EngA [Streptococcus pyogenes ATCC 10782] Length = 436 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + ++ AD++ VV S +E + + + +I R++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAQIAMEEADVIVFVV-SGKEGVTDADEYVSKILYRTNTPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVF 74 V++N +L+G N GKS+L+N +G I + TTR + ++ + Q Sbjct: 168 VEENDDIIHFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTM 227 Query: 75 LDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAK 128 +DT G+ + Y K + + I +D+V +V+++ RE I E K Sbjct: 228 IDTAGMRKSGKIYENTEKYSVMRAIRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK 287 Query: 129 RSSRLILILNKIDCV 143 +I+++NK D + Sbjct: 288 ---GMIIVVNKWDTI 299 >gi|251781814|ref|YP_002996116.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390443|dbj|BAH80902.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126626|gb|ADX23923.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 436 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + ++ AD++ VV S +E + + + +I R++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAQIAMEEADVIVFVV-SGKEGVTDADEYVSKILYRTNTPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVF 74 V++N +L+G N GKS+L+N +G I + TTR + ++ + Q Sbjct: 168 VEENDDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTM 227 Query: 75 LDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAK 128 +DT G+ + Y K + + I +D+V +V+++ RE I E K Sbjct: 228 IDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK 287 Query: 129 RSSRLILILNKIDCV 143 +I+++NK D + Sbjct: 288 ---GMIIVVNKWDTI 299 >gi|269792400|ref|YP_003317304.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100035|gb|ACZ19022.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 443 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+L NR +G K++IV TR + + +DT GI +A Sbjct: 3 VVAIVGRPNVGKSSLFNRLIGRKLAIVEDIPGVTRDRLYAETEWDGKRFYLVDTGGIESA 62 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + ++ R +K D+V ++D + + + E+ +RSS+ +I+ +NKID Sbjct: 63 SPHPFQDVIARQVQMALKECDVVIFLLDGKEGVTAG-DEAIAEMLRRSSKPVIVAMNKID 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E + A L F +S G G D+L+ + S LP Sbjct: 122 NPKRE---DNVLDAYSLGF-HTVMGISVEHGIGIGDLLDSVVSALP 163 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 5/133 (3%) Query: 18 DNSRSGCVAL--VGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 D + G + L VG N GKS+L NR +G + ++V+ TTR V V + + + Sbjct: 169 DGTDDGVIKLSVVGRPNVGKSSLFNRLIGQERAVVSPIPGTTRDTVDVDVRLGDVDVRLM 228 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ D + + I +D+ +++D+ L L+ + +R Sbjct: 229 DTAGMRRKSRVDDPLEYYSVVRTLKAIDRSDVSLVLMDATELLTEQDKRLMLHVEERGKG 288 Query: 133 LILILNKIDCVKP 145 LI+ +NK D + P Sbjct: 289 LIIGVNKWDLLPP 301 >gi|270289896|ref|ZP_06196122.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4] gi|270281433|gb|EFA27265.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4] Length = 464 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 223 RDGLATAIIGHPNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S ++ AD+V LV+DS L+ LL + A + + I++LNK Sbjct: 283 IHETEDKVEKIGVDRSRKALQQADLVILVLDSSVPLRDEDRQLLDQTA--NMQRIVVLNK 340 Query: 140 IDC 142 D Sbjct: 341 TDL 343 >gi|122701651|emb|CAL88215.1| GTPase [Helicobacter pylori] gi|122701653|emb|CAL88216.1| GTPase [Helicobacter pylori] gi|122701669|emb|CAL88224.1| GTPase [Helicobacter pylori] gi|122702187|emb|CAL88284.1| GTPase [Helicobacter pylori] gi|122702191|emb|CAL88286.1| GTPase [Helicobacter pylori] gi|122702197|emb|CAL88289.1| GTPase [Helicobacter pylori] gi|122702201|emb|CAL88291.1| GTPase [Helicobacter pylori] gi|122702685|emb|CAL88532.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F VS + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNVSVSHNRGISALIDAILSALNLNP 170 >gi|56696948|ref|YP_167310.1| GTP-binding protein HflX [Ruegeria pomeroyi DSS-3] gi|56678685|gb|AAV95351.1| GTP-binding protein HflX [Ruegeria pomeroyi DSS-3] Length = 424 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 8/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R +V +++ DT G + Sbjct: 205 IVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRRVVLPDGPEVILSDTVGFISD 264 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLIL-ILN 138 + R + + AD++ V D H E ++ +L + R + N Sbjct: 265 LPTELVAAFRATLEEVLAADLIVHVRDIHHAATEEQARDVETILASLGVDEGRPKFEVWN 324 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K+D + P++ +A + + F VSA G G + +L + L Sbjct: 325 KVDLLDPDK---RAALRERTARDPSLFAVSAVTGEGLESLLTAIAEAL 369 >gi|332992293|gb|AEF02348.1| GTP-binding protein Der [Alteromonas sp. SN2] Length = 481 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G ++ Q + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEQRQFIVVDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M + S I+ AD+V L+VD+ L + I + + ++ ++ NK+D + Sbjct: 64 EEGIDAEMAQQSLLAIEEADVVLLLVDARAGLLPADQGIADHIRRLNKKVFVVANKVDGI 123 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR V + E + + +DT G+ + Sbjct: 196 LAIVGKPNVGKSTLTNRILGEERVVVFDLPGTTRDSVFIPMERDEREYILIDTAGVRKRR 255 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K I + I A++V +++D+ + LL + L++ +NK D Sbjct: 256 KVNEAVEKFSIVKTLQAIDEANVVLMIIDAREGITDQDLSLLGFVLNSGRSLVIAVNKWD 315 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + + E+ +L FI+ + +SA G G ++ YL +T Sbjct: 316 GLSTDIKNDIKRELDRRLGFIDFARLHFISAMHGTGVGNLFESVQEAYLSAT 367 >gi|217034119|ref|ZP_03439539.1| hypothetical protein HP9810_868g12 [Helicobacter pylori 98-10] gi|216943403|gb|EEC22859.1| hypothetical protein HP9810_868g12 [Helicobacter pylori 98-10] Length = 461 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 17/175 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 NKID K + E+A A + K+F +S + G +++ + S L L P + Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISTLIDAILSALNLNPII 173 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 4/149 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + IV LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIVLLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSAT 170 A + K F+E +++A+ Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITAS 349 >gi|21909785|ref|NP_664053.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS315] gi|28896522|ref|NP_802872.1| GTP-binding protein EngA [Streptococcus pyogenes SSI-1] gi|26006710|sp|Q8K8J8|DER_STRP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21903970|gb|AAM78856.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes MGAS315] gi|28811776|dbj|BAC64705.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes SSI-1] Length = 436 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + ++ AD++ VV S +E + + + +I R++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAQIAMEEADVIVFVV-SGKEGVTDADEYVSKILYRTNTPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCV 143 K D + Sbjct: 295 KWDAI 299 >gi|332360804|gb|EGJ38610.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK49] Length = 457 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 9/132 (6%) Query: 18 DNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D +R G A++G N GKS+L+N + +IVT TTR ++ V+ K Sbjct: 212 DTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGV 271 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + +DT GI D ++ + S ++ AD+V LV+++ L LL EI++ S Sbjct: 272 PLKLIDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISQDS 330 Query: 131 SRLILILNKIDC 142 +R++L LNK D Sbjct: 331 NRIVL-LNKTDL 341 >gi|312623584|ref|YP_004025197.1| tRNA modification GTPase trme [Caldicellulosiruptor kronotskyensis 2002] gi|312204051|gb|ADQ47378.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kronotskyensis 2002] Length = 455 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 72/122 (59%), Gaps = 4/122 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG +VG N GKS+L+NR + + +IVT TTR ++ ++ + I+ DT G Sbjct: 218 KSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +D K+ ++ + +I+ AD+V +V+S L+ ++ ++ + I ++ R I+I+NK Sbjct: 278 VRKTEDIVEKIGVKKTLESIERADLVLFMVESSGILQEDL-EIFETI--KNKRFIVIVNK 334 Query: 140 ID 141 ID Sbjct: 335 ID 336 >gi|311742420|ref|ZP_07716229.1| ribosome-associated GTPase EngA [Aeromicrobium marinum DSM 15272] gi|311314048|gb|EFQ83956.1| ribosome-associated GTPase EngA [Aeromicrobium marinum DSM 15272] Length = 450 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 6/181 (3%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 +EH D N +A++G N GKSTLVNR +G + ++V TR V + Sbjct: 4 SEHDDI--PNGPLPVLAVIGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYEATWNG 61 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 +DT G + + + ++ AD V VVD+ + + ++K + Sbjct: 62 RTFTVVDTGGWDPDARGLAERIAAQAEIAVQVADAVLFVVDATIGITDSDEAVVKILRAA 121 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ++L NK+D + E E A + N + + + F VSA G G D+L+ + LP A Sbjct: 122 GKPVVLAANKVDDQRTE--AEAASLWN--LGLGEPFPVSALHGRGSGDMLDAILGVLPDA 177 Query: 190 P 190 P Sbjct: 178 P 178 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 10/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA+VG N GKS+L+NR G + +V TT V +V F+DT GI Sbjct: 191 VAIVGKPNVGKSSLLNRLAGEERVVVDDASGTTVDPVDELVELGGGLWTFIDTAGIRRRV 250 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +A + +R S + I+ A++ +++D+ + L ++ +A+ L++ NK Sbjct: 251 RDASGHEYYASLRTS-AAIERAEVAVMIIDASQPLTEQDTRIISTVAETGRALVIAFNKW 309 Query: 141 DCVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 D V ER L++ EI +LV ++ ++A G D ++ L S L Sbjct: 310 DQVDEERRYYLDR-EIERELVQVQWAPRINIAALTGWHVDRLVRALDSAL 358 >gi|228470615|ref|ZP_04055472.1| ribosome-associated GTPase EngA [Porphyromonas uenonis 60-3] gi|228307742|gb|EEK16718.1| ribosome-associated GTPase EngA [Porphyromonas uenonis 60-3] Length = 436 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKSTL NR ++ +IVT + TTR G V+ E +DT G + Sbjct: 2 SNLVAIVGRPNVGKSTLFNRLTRSRQAIVTDEAGTTRDRQYGHVTWCERTFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 + D + + + + ++ AD++ VVD + + DL EIA + S +IL+ Sbjct: 62 LRSDDVFEEEINKQVRIAVEEADLILFVVD----ILNGVTDLDDEIALMLRQTSKPVILV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D + AE + + + +SA G D+L+++ LP Sbjct: 118 ANKADNFTQHN--DAAEFYS--LGLGDPHPISAINGSSTGDLLDHILGLLP 164 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 12/137 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS+L+N +G + +IVT + TTR + + +DT GI Sbjct: 179 AIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFAEYDKYNQHFYLVDTAGIRKKGK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ + I++AD+ +++D+ R ++ ++ + I + S L++ +NK Sbjct: 239 VNEDLEYYSVIRAI--RAIENADVCIMLIDATRGIEAQDANIFRVIQRNSKGLVVCVNKW 296 Query: 141 DCVKP-----ERLLEQA 152 D V+ +R +E+A Sbjct: 297 DLVEDKSLPVQRTMEEA 313 >gi|317478951|ref|ZP_07938098.1| small GTP-binding domain-containing protein [Bacteroides sp. 4_1_36] gi|316904928|gb|EFV26735.1| small GTP-binding domain-containing protein [Bacteroides sp. 4_1_36] Length = 396 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 17/169 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS-IVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G N+GKS+LVN G ++V+ TT + + + +F+DTPG + Sbjct: 12 IAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFIDTPGFDDD 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + T++ ADI L+ ++ L+ LK +A R +ILILNK D Sbjct: 72 EGELGGMRVERTLKTVEKADIALLLYEADGTLE---QQWLKLLAAREIPVILILNKAD-- 126 Query: 144 KPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCSTLP 187 + + A+ ++ IEK +VSA +G G + + + LP Sbjct: 127 ------SRQDTASVVLRIEKECGQAPVVVSAKEGTGIQGIFDAILEKLP 169 >gi|229176160|ref|ZP_04303652.1| tRNA modification GTPase mnmE [Bacillus cereus MM3] gi|228607319|gb|EEK64649.1| tRNA modification GTPase mnmE [Bacillus cereus MM3] Length = 458 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTHEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQAEIANKLV 159 D + ER+ E A N+++ Sbjct: 336 TDLSQVIDMERVTELAA-GNRII 357 >gi|156972770|ref|YP_001443677.1| tRNA modification GTPase TrmE [Vibrio harveyi ATCC BAA-1116] gi|166234831|sp|A7N0X8|MNME_VIBHB RecName: Full=tRNA modification GTPase mnmE gi|156524364|gb|ABU69450.1| hypothetical protein VIBHAR_00435 [Vibrio harveyi ATCC BAA-1116] Length = 453 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + D+ + R S + +I NK D Sbjct: 278 DEVEKIGIERAWDEIAQADRVLFMVDGTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKAD 337 Query: 142 CVKPE 146 E Sbjct: 338 QTGEE 342 >gi|156742840|ref|YP_001432969.1| tRNA modification GTPase TrmE [Roseiflexus castenholzii DSM 13941] gi|205415804|sp|A7NN19|MNME_ROSCS RecName: Full=tRNA modification GTPase mnmE gi|156234168|gb|ABU58951.1| tRNA modification GTPase TrmE [Roseiflexus castenholzii DSM 13941] Length = 464 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 21 RSGCVA-LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A LVG NAGKS+L+N + +IVT TTR + + +V DT G Sbjct: 214 RQGARATLVGRPNAGKSSLLNALLRIDRAIVTPIPGTTRDTLEETANLGGVPVVLTDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILN 138 I + D +L + S + AD++ LVV+ + + D + +A R R +LI+N Sbjct: 274 IVESVDPVERLGVERSRQAVAQADLLLLVVEG---VSQPVDDDREIVALTRDKRTVLIVN 330 Query: 139 KIDCVKPE-------RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 KID + + L+ A + V + T VSA G G D Sbjct: 331 KIDLIDGADAVQECMKFLKCAYENLRGVPFDATIAVSALTGQGLD 375 >gi|323136434|ref|ZP_08071516.1| GTP-binding proten HflX [Methylocystis sp. ATCC 49242] gi|322398508|gb|EFY01028.1| GTP-binding proten HflX [Methylocystis sp. ATCC 49242] Length = 444 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 7/170 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A+V T +R I ++++ DT G + Sbjct: 214 VVALVGYTNAGKSTLFNRLTKAEVLAQDMLFATLDPTLRQIRLPHGARVLLSDTVGFISD 273 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIAKRS---SRLILI 136 + R + + AD++ V D SH + + D +L E+ + R++ + Sbjct: 274 LPTMLVSAFRATLEEVTLADVILHVRDVSHEDSEAQARDVETILDELGLKGEAEGRILEV 333 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + PER + A + + SA G G D++L + + L Sbjct: 334 WNKIDALDPERQEALRQTARGFDPQRRPVLASALTGQGLDELLARIETIL 383 >gi|261868617|ref|YP_003256539.1| tRNA modification GTPase TrmE [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413949|gb|ACX83320.1| tRNA modification GTPase TrmE [Aggregatibacter actinomycetemcomitans D11S-1] Length = 451 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 19/138 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNTLAGREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----------LI 134 D ++ I +W I+ AD + L++DS D +++AK S L Sbjct: 277 DEVERIGISRAWHEIEQADRILLMLDS--------SDTEQDLAKVRSEFLAKLPNNIPLT 328 Query: 135 LILNKIDCV-KPERLLEQ 151 +I NK D + ERL E+ Sbjct: 329 IIRNKADLSGEAERLYEE 346 >gi|224541354|ref|ZP_03681893.1| hypothetical protein CATMIT_00514 [Catenibacterium mitsuokai DSM 15897] gi|224525688|gb|EEF94793.1| hypothetical protein CATMIT_00514 [Catenibacterium mitsuokai DSM 15897] Length = 435 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G VA+VG N GKSTL NR +G +VSIV TR + S + +DT GI Sbjct: 2 KKGIVAIVGRANVGKSTLFNRIIGERVSIVEDVPGVTRDRIYAKASWLTKEFRIIDTGGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + + I+ AD++ VV+ L + + + + K ++L +NKI Sbjct: 62 ELKNADFTEQIKTQAEIAIEEADVIIFVVNGREGLTSEDNFVARMLQKSGKPVLLAVNKI 121 Query: 141 DCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D V + + + + I + VS+ G G D+L+ + LP Sbjct: 122 DDVAFRDNIYDFYSLG-----IGEPIPVSSAHGIGVGDLLDEVIRVLP 164 Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+++G N GKS+L N +G IV++ TTR + + + +DT G+ Sbjct: 177 VSIIGRPNVGKSSLTNAILGEDRVIVSNIEGTTRDAIDTAFEKDGYKYRIIDTAGMRKKG 236 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + ++ +D++ VVD R E ++ E+ K ++L++N Sbjct: 237 KVYENIEKYSVLRALKAVEQSDVILCVVDGERGIIEQDKHVAGYAHELGK---SVVLVVN 293 Query: 139 KIDCV-KPERLLEQAE 153 K D V K E+ + + E Sbjct: 294 KWDAVTKDEKTMAKME 309 >gi|212712606|ref|ZP_03320734.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM 30120] gi|212684822|gb|EEB44350.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM 30120] Length = 454 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VDS Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDS 305 >gi|122701597|emb|CAL88188.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER+ + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERVYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLNLNP 170 >gi|99905859|gb|ABF68624.1| YphC [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + TL L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILDTLNLKP 170 >gi|324992824|gb|EGC24744.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK405] gi|327489811|gb|EGF21601.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1058] Length = 457 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI++ S+R++L LNK Sbjct: 281 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISQDSNRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|184201166|ref|YP_001855373.1| GTP-binding protein EngA [Kocuria rhizophila DC2201] gi|183581396|dbj|BAG29867.1| GTP-binding protein EngA [Kocuria rhizophila DC2201] Length = 499 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V +DT G Sbjct: 63 VVAVVGRPNVGKSTLVNRVIGRREAVVEDTPGVTRDRVSYKAEWNGKNFTLVDTGGWEQD 122 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +K + + +++AD V LV+D + ++ + + +I++ NK D Sbjct: 123 AKGINKRVADQAELAVQNADAVLLVLDVTVGVTATDEGVVNMLRRVKKPIIVVANKADSP 182 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + LE A + + + F VSA G G D L+ L + LP Sbjct: 183 Q----LEIEATALWSLGMGEPFPVSALHGKGSGDALDALVNALP 222 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 15/132 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VAL+G N GKS+L+N+ G+ +V TTR V IV F+DT GI Sbjct: 239 VALIGRPNVGKSSLLNKLAGSDRVVVDDTAGTTRDPVDEIVMLGGEPWRFIDTAGIRRRV 298 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLIL 135 D Y L + + + A +V L VD S +++++ L+ L+L Sbjct: 299 HLQQGADFYASLRTQTALERAEVA-VVLLAVDEVLSEQDVRI-----LQMAVDSGRALVL 352 Query: 136 ILNKIDCVKPER 147 NK D + ER Sbjct: 353 AFNKWDTLDDER 364 >gi|160915095|ref|ZP_02077308.1| hypothetical protein EUBDOL_01103 [Eubacterium dolichum DSM 3991] gi|158432894|gb|EDP11183.1| hypothetical protein EUBDOL_01103 [Eubacterium dolichum DSM 3991] Length = 436 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 G VA+VG N GKST+ NR +G + SIV TR + G + +DT GI Sbjct: 4 GVVAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTKEFRLIDTGGIQL 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D ++ +++ + I+ AD + VV + + + + + K + ++IL +NKID Sbjct: 64 EDQDFQQEIQMQVEIA-IEEADAIVFVVSGREGVTRDDEYIARLLQKTNKKIILAVNKID 122 Query: 142 --CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++P + E ++ + VS + G G D+L+ + + P Sbjct: 123 DESLQPS-IYEFYQLG-----VGDPIAVSGSHGIGIGDILDEIVHSFP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 11/149 (7%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 FNE++ + L+G N GKS+LVN + IV++ TTR + + + Sbjct: 168 FNEYEGMTR-------FCLIGRPNVGKSSLVNAILDQDRVIVSNIEGTTRDAIDTPFTRE 220 Query: 69 ESQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 V +DT GI Y K + + S I+ +D+V +V+D ++ + Sbjct: 221 GKDYVVIDTAGIRRRGKVYENIEKYSVLRAMSAIERSDVVLVVIDGETGIREQDKHVAGY 280 Query: 126 IAKRSSRLILILNKIDCV-KPERLLEQAE 153 + +I++ NK D V K ER + + E Sbjct: 281 AHEAGKGVIIVYNKWDAVEKDERTMVKIE 309 >gi|153835787|ref|ZP_01988454.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01] gi|148867486|gb|EDL66856.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01] Length = 453 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + D+ + R S + +I NK D Sbjct: 278 DEVEKIGIERAWDEIAQADRVLFMVDGTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKAD 337 Query: 142 CVKPE 146 E Sbjct: 338 QTGEE 342 >gi|295678212|ref|YP_003606736.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002] gi|295438055|gb|ADG17225.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002] Length = 464 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ + +D K+ I +W I+ AD+V ++D+ + Sbjct: 261 TRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIERTWGEIERADVVLHLLDARAGMT 320 Query: 117 VNIHDLLKEIAKRSSR---LILILNKID 141 + + IA R R ++ +LNK D Sbjct: 321 TDD----ETIAGRFPRGVPVVRVLNKTD 344 >gi|254283197|ref|ZP_04958165.1| GTP-binding protein EngA [gamma proteobacterium NOR51-B] gi|219679400|gb|EED35749.1| GTP-binding protein EngA [gamma proteobacterium NOR51-B] Length = 472 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL N+ + ++V + TR G + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNQLTRTRDALVANLSGLTRDRQYGDGKVGAVPYIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I+ ADIV L+VD ++ L+ + ++S L++NKID V Sbjct: 64 ESGIDAAMAGQSQTAIEEADIVLLMVDGRAGIQAGDEALVSYLRRKSKPFHLVINKIDGV 123 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCS 184 E+A +++ F I+ ++A+ G ++ + S Sbjct: 124 G-----EEAALSDFYGFGIDGMHAIAASHNRGISSMMQSVLS 160 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 8/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VA +G N GKSTL+NR +G +V + TTR + + +DT G+ Sbjct: 178 VAAIGRPNVGKSTLINRLLGDDRVVVFDEPGTTRDSIYIDFERRGQAYTLIDTAGVRRRK 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-LKVNIHDLLKEIAKRSSRLILILNKI 140 N +++ K I + I A +V L++D+H ++ ++H LL + L++ +NK Sbjct: 238 NVRETVEKFSIVKTLKAIADAHVVILLMDAHEGVVEQDLH-LLGQCIDAGRGLVIAVNKW 296 Query: 141 DCVKP-ERLLEQAEIANKLVFIEKT--FMVSATKGHGC 175 D V P ER ++E+ +L F++ +SA G G Sbjct: 297 DGVDPDERDWIRSELQRRLQFVDYADIHFISALHGTGV 334 >gi|188533178|ref|YP_001906975.1| GTP-binding protein EngA [Erwinia tasmaniensis Et1/99] gi|238689730|sp|B2VE93|DER_ERWT9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188028220|emb|CAO96078.1| GTP-binding protein [Erwinia tasmaniensis Et1/99] Length = 499 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + + +DT G+ Sbjct: 213 LAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKRG 272 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+H + LL I L++++NK D Sbjct: 273 KVTETVEKFSVIKTLQAIEDANVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNKWD 332 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E E + +L FI+ + +SA G G ++ Y CST Sbjct: 333 GLSQEVRDEVKEALDYRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCST 384 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADTAIAKHLRSRQKPTFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + A + + + + ++A+ G G +L L L PW+ Sbjct: 124 DA----DSAVVDFWSLGLGEIHPIAASHGRGVTSLLE-----LVLLPWM 163 >gi|163791744|ref|ZP_02186131.1| tRNA modification GTPase [Carnobacterium sp. AT7] gi|159872986|gb|EDP67103.1| tRNA modification GTPase [Carnobacterium sp. AT7] Length = 462 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ +S + + +DT G Sbjct: 222 REGLATAIIGRPNVGKSSLLNYLLDEEKAIVTDIAGTTRDVIEEYISVRGVPLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V LV + L + L++ A R I+ILNK Sbjct: 282 IRETEDIIERIGVERSRQALSDADLVLLVFNQSEPLTIEDKALIE--ATNQHRRIVILNK 339 Query: 140 IDCVKPERL 148 +D P +L Sbjct: 340 MDL--PNKL 346 >gi|83319722|ref|YP_424766.1| tRNA modification GTPase TrmE [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535480|sp|Q2SR47|MNME_MYCCT RecName: Full=tRNA modification GTPase mnmE gi|83283608|gb|ABC01540.1| tRNA modification GTPase TrmE [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 452 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 8/124 (6%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 NS A+VG TN GKS+++N + +IVT TTR IV G ++ + + +DT Sbjct: 214 NSEGIKTAIVGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTA 273 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAK--RSSRLIL 135 GI D L I S + I AD+V VV+ K NI+DL +EI + + IL Sbjct: 274 GIRKTSDVVENLGILKSKNLINEADLVLFVVN-----KENINDLDNQEIFELLKDKTYIL 328 Query: 136 ILNK 139 I+NK Sbjct: 329 IVNK 332 >gi|320539849|ref|ZP_08039508.1| GTP-binding protein with a role in modification of tRNA [Serratia symbiotica str. Tucson] gi|320030035|gb|EFW12055.1| GTP-binding protein with a role in modification of tRNA [Serratia symbiotica str. Tucson] Length = 454 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 10/138 (7%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DSVRGEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ A D ++ I +W+ I+ AD V +VD + ++ +E Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFMVDGTTTVATEPAEIWQEF 320 Query: 127 AKRSSR---LILILNKID 141 R + + ++ NK D Sbjct: 321 TARLPQRLPITVVRNKAD 338 >gi|255535209|ref|YP_003095580.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Flavobacteriaceae bacterium 3519-10] gi|255341405|gb|ACU07518.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Flavobacteriaceae bacterium 3519-10] Length = 462 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKSTL+N + + +IV+ TTR + ++ K + +DT G+ Sbjct: 220 VAIIGKPNAGKSTLLNALLKEERAIVSDIAGTTRDTIEEMLHIKGNAFRLIDTAGLRETS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K+ + + + A+I+ ++DS +L++++A+ LI++L K D Sbjct: 280 DEIEKIGVAKAREKVATAEILVYLIDSTETDISEDVELIRDLARYDLSLIVLLTKTDL-- 337 Query: 145 PERLLEQAEIANKL 158 P+ L+ EI N L Sbjct: 338 PKSALQSEEIRNSL 351 >gi|167772322|ref|ZP_02444375.1| hypothetical protein ANACOL_03699 [Anaerotruncus colihominis DSM 17241] gi|167665425|gb|EDS09555.1| hypothetical protein ANACOL_03699 [Anaerotruncus colihominis DSM 17241] Length = 442 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 8/159 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A+VG N GKSTL N+ GA++SIV TR V + ++ +DT GI + Sbjct: 6 IAIVGRPNVGKSTLFNKLAGARISIVEDTPGVTRDRVYYECEWRAKTVMLVDTGGIEPYS 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R + I AD++ LV D + D+ + K ++L +NK D + Sbjct: 66 TDKILSQMRRQAQLAIDSADVIILVTDIQSGVTATDQDVAVMLQKSGKPVVLAVNKCDRL 125 Query: 144 K--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 P E + + VS+ GHG D+L+ Sbjct: 126 GDVPPDFYEFYNLG-----LGDPIAVSSVHGHGTGDLLD 159 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+LVNR G + SIV+ TTR V +V + + VF+DT GI Sbjct: 180 VAVIGKPNVGKSSLVNRVAGEERSIVSDMAGTTRDAVDTVVENEYGRFVFIDTAGIRRKS 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + + ++ + +D+ +++D+ + +R I+ +NK D Sbjct: 240 RVEEQIERYSVLRAYMAVDRSDVCVIMIDATVGFTEQDSKIAGYAHERGKGCIVAVNKWD 299 Query: 142 CVKPE 146 ++ + Sbjct: 300 AIEKD 304 >gi|71902945|ref|YP_279748.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS6180] gi|123640474|sp|Q48V63|DER_STRPM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71802040|gb|AAX71393.1| GTP-binding protein [Streptococcus pyogenes MGAS6180] Length = 436 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + ++ AD++ VV S +E + + + +I R++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAQIAMEEADVIVFVV-SGKEGVTDADEYVSKILYRTNTPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDEIVENLPV 165 Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCV 143 K D + Sbjct: 295 KWDTI 299 >gi|300724175|ref|YP_003713492.1| GTP-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297630709|emb|CBJ91374.1| GTP-binding protein, essential for cell growth [Xenorhabdus nematophila ATCC 19061] Length = 496 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ L H + K + R L+ NK D + Sbjct: 64 EEGVETHMAAQSLMAIEEADIVLFMVDARSGLMPADHAIAKHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 E Sbjct: 124 DIE 126 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + + +DT G+ Sbjct: 212 LAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKRG 271 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++ +NK D Sbjct: 272 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIAVNKWD 331 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E ++ + +L F++ + +SA G G ++ Sbjct: 332 GMSQEDKDHVKDMLDLRLGFVDFARVHFISALHGSGVGNLF 372 >gi|224063199|ref|XP_002301037.1| predicted protein [Populus trichocarpa] gi|222842763|gb|EEE80310.1| predicted protein [Populus trichocarpa] Length = 483 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + ++ +IVT TTR IV ++ ++ LDT GI Sbjct: 239 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDIVEASITVGGIPVILLDTAGIRVTD 298 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS------SRLILILN 138 D K+ + S + AD++ + V + +LL I + + +IL++N Sbjct: 299 DVVEKIGVERSEAVALGADVIVMTVSALDGWTPEDTELLNRIVSKKKSVGSFTPMILVVN 358 Query: 139 KIDC 142 KIDC Sbjct: 359 KIDC 362 >gi|167755185|ref|ZP_02427312.1| hypothetical protein CLORAM_00690 [Clostridium ramosum DSM 1402] gi|237734935|ref|ZP_04565416.1| tRNA modification GTPase mnmE [Mollicutes bacterium D7] gi|167705235|gb|EDS19814.1| hypothetical protein CLORAM_00690 [Clostridium ramosum DSM 1402] gi|229381711|gb|EEO31802.1| tRNA modification GTPase mnmE [Coprobacillus sp. D7] Length = 444 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + +IVT+ TTR IV G +S + +DT GI D Sbjct: 222 IIGRPNVGKSSLLNALLREDKAIVTNIAGTTRDIVEGSISIDGVVLNMIDTAGIRETDDI 281 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + S I AD+V LV+D + L LL E+ + ++R I++LNK D Sbjct: 282 IESMGVEKSKELIHQADLVLLVIDGSQSLSSEDMQLL-ELTEDATR-IIVLNKAD 334 >gi|307825358|ref|ZP_07655577.1| tRNA modification GTPase TrmE [Methylobacter tundripaludum SV96] gi|307733533|gb|EFO04391.1| tRNA modification GTPase TrmE [Methylobacter tundripaludum SV96] Length = 448 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 11/164 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +GEI + ++D V L G NAGKS+L+N G + +IVT TTR +++ Sbjct: 201 IGEIQKTAQQGRLLRDGM---TVVLAGKPNAGKSSLLNALAGHEAAIVTDIAGTTRDVLK 257 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + + +DT G+ + ++ + IR + IK+AD + L++D+ + L Sbjct: 258 ERIQLDGMPLHIIDTAGLRESDNAIEQEGIRRAHEEIKNADKILLLIDAR---EAETESL 314 Query: 123 LKEIAKRSSRLILILNKIDC--VKPERLLEQAEIANKLVFIEKT 164 LK + + I NKID +KPE ++Q E+ ++ KT Sbjct: 315 LKTLPS-GGNITQIYNKIDLLGLKPE--IKQTELGTQIYLSIKT 355 >gi|312196768|ref|YP_004016829.1| ribosome-associated GTPase EngA [Frankia sp. EuI1c] gi|311228104|gb|ADP80959.1| ribosome-associated GTPase EngA [Frankia sp. EuI1c] Length = 438 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + + +DT G Sbjct: 1 MLAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDANWSGRRFTLVDTGGWEPD 60 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + + AD V VVD+ V D + +A+ RS R ++L NK Sbjct: 61 ARGLAGRVSAQAQRALATADAVLFVVDA----TVGATDADEAVARVLHRSGRPVVLAANK 116 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +D ++ LE A + + + + VSA G G D+L+ + + LP AP Sbjct: 117 VD----DQRLESDTAALWGLGLGEPYPVSALHGRGSGDLLDAVLAALPEAP 163 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 12/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+++NR G + ++V TTR V +V+ Q +F+DT G+ Sbjct: 176 VALVGRPNVGKSSMLNRLAGEERALVHDVAGTTRDPVDELVTVGGEQWLFIDTAGLRRRV 235 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + Y L + + I+ A++ +++D+ L +++ + L+L N Sbjct: 236 GQSSGAEYYSSLR---TAAAIEAAEVAIVLLDAGETLTEQDQRVVQMVVDAGRALVLAFN 292 Query: 139 KIDCVKPERLLE-QAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTL 186 K D + +R L + EI+ L + VSA G D + L ++L Sbjct: 293 KWDLLDEDRRLTLEKEISRDLARVAWAPRVNVSALTGRATDRLAPALHTSL 343 >gi|160888145|ref|ZP_02069148.1| hypothetical protein BACUNI_00553 [Bacteroides uniformis ATCC 8492] gi|160890555|ref|ZP_02071558.1| hypothetical protein BACUNI_02997 [Bacteroides uniformis ATCC 8492] gi|156860287|gb|EDO53718.1| hypothetical protein BACUNI_02997 [Bacteroides uniformis ATCC 8492] gi|156862280|gb|EDO55711.1| hypothetical protein BACUNI_00553 [Bacteroides uniformis ATCC 8492] Length = 396 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 17/169 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS-IVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G N+GKS+LVN G ++V+ TT + + + +F+DTPG + Sbjct: 12 IAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFIDTPGFDDD 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + T++ ADI L+ ++ L+ LK +A R +ILILNK D Sbjct: 72 EGELGGMRVERTLKTVEKADIALLLYEADGTLE---QQWLKLLAAREIPVILILNKAD-- 126 Query: 144 KPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCSTLP 187 + + A+ ++ IEK +VSA +G G + + + LP Sbjct: 127 ------SRQDTASVVLRIEKECGQAPVVVSAKEGTGIQGIFDTILEKLP 169 >gi|238797968|ref|ZP_04641458.1| GTP-binding protein engA [Yersinia mollaretii ATCC 43969] gi|238718173|gb|EEQ09999.1| GTP-binding protein engA [Yersinia mollaretii ATCC 43969] Length = 495 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ E + V +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYVLIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 270 KVTETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 330 GMTEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCST 381 >gi|283787594|ref|YP_003367459.1| tRNA modification GTPase [Citrobacter rodentium ICC168] gi|282951048|emb|CBG90726.1| probable tRNA modification GTPase [Citrobacter rodentium ICC168] Length = 454 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPVEIWPDF 320 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ ++L ++ NK D + E L + LV +SA G G D + N+L Sbjct: 321 IARLPAKLPITVVRNKAD-ITGEALGISEVNGHSLV------RLSARTGEGVDVLRNHLK 373 Query: 184 STL 186 ++ Sbjct: 374 QSM 376 >gi|186477840|ref|YP_001859310.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815] gi|184194299|gb|ACC72264.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815] Length = 466 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 19/205 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLARIRERLALVLSEARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ + Sbjct: 261 TRDKVAQTIQVEGIPLHVIDTAGLRETEDEVEKIGIERTWGEIERADVVLHLLDA----R 316 Query: 117 VNIHDLLKEIAKR---SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 + D + IA R ++ +LNK D +E+ + + E +SA G Sbjct: 317 SGMTDDDEAIAARFPAGVPVVRVLNKTDLTGAAPHVEKLNASGEPDLCE--VRLSAKMGD 374 Query: 174 GCDDVLNYLCSTLPLAPWVYSADQI 198 G + L L +A W A+ + Sbjct: 375 GISLLRGEL---LRIAGWQAGAESV 396 >gi|332558240|ref|ZP_08412562.1| small GTP-binding protein [Rhodobacter sphaeroides WS8N] gi|332275952|gb|EGJ21267.1| small GTP-binding protein [Rhodobacter sphaeroides WS8N] Length = 447 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 14/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +RG+ +++ DT G + Sbjct: 228 IVALVGYTNAGKSTLFNRMTGADVLAKDMLFATLDPTMRGVTLPSGRKVILSDTVGFISD 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHREL---KVNIHDLLKEIA-KRSSRLILILN 138 + R + + AD++ V D +H E ++ ++L+ + K ++ + + N Sbjct: 288 LPTQLVAAFRATLEEVLEADLILHVRDIAHPETAEQAADVAEILQSLGVKGATPQVEVWN 347 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K+D V+ E+LL QA + E F +SA G G D+L + + Sbjct: 348 KLDLVEGAAHEQLLAQAAKS------ETIFALSALTGEGLPDLLEAVSAAF 392 >gi|324994536|gb|EGC26449.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK678] Length = 457 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI++ S+R++L LNK Sbjct: 281 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISQDSNRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|309811288|ref|ZP_07705077.1| GTP-binding protein HflX [Dermacoccus sp. Ellin185] gi|308434770|gb|EFP58613.1| GTP-binding protein HflX [Dermacoccus sp. Ellin185] Length = 508 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 16/193 (8%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ + K + N+ VA+ G TNAGKS+++NR A V + T V Sbjct: 267 EIAEMKTTRDTKRSGRRNNNVPSVAIAGYTNAGKSSILNRLTNAGVLVQNQLFATLDPTV 326 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVN 118 R + DT G +D H+L+ R + + AD++ VVD SH + + Sbjct: 327 RRAETADGRAYTLADTVGFV--RDLPHQLVEAFRSTLEEVADADLLLHVVDGSHPDPESQ 384 Query: 119 I---HDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHG 174 I ++L ++ + I+++NK D P ++ ++L+ EK VSA G G Sbjct: 385 ISAVREVLADVDASDVKEIIVINKADVADP-------DVIDRLMRHEKYAIAVSARTGAG 437 Query: 175 CDDVLNYLCSTLP 187 ++L + LP Sbjct: 438 LPELLQLIADELP 450 >gi|326202948|ref|ZP_08192815.1| GTP-binding proten HflX [Clostridium papyrosolvens DSM 2782] gi|325987025|gb|EGD47854.1| GTP-binding proten HflX [Clostridium papyrosolvens DSM 2782] Length = 596 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 20/185 (10%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ + ++F++ N S +A+VG TNAGKSTL+NR G++V + T Sbjct: 357 ELKQLEKRREFLRSNRTSNNTPVIAIVGYTNAGKSTLLNRMCGSEVLVEDKLFATLDPSA 416 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK---HADIVCLVVDSHRE---L 115 R + + + +DT G + H L I ST++ HAD++ VVD+ E + Sbjct: 417 RQLTMSDGREAILVDTVGFI--RKLPHDL-IEAFKSTLEEAVHADMLLHVVDASNENVSM 473 Query: 116 KVN-IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +++ + LL+E+ + IL+LNK D +K R + V +SA+ G G Sbjct: 474 QISVVEKLLEELGASTKNTILVLNKQDLIKDGRRIST-------VGYSSVCEISASTGFG 526 Query: 175 CDDVL 179 + +L Sbjct: 527 IEQLL 531 >gi|255026481|ref|ZP_05298467.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-003] Length = 457 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ EL V L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQSEELTVEDEALFE--AAAGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|298528962|ref|ZP_07016365.1| tRNA modification GTPase TrmE [Desulfonatronospira thiodismutans ASO3-1] gi|298510398|gb|EFI34301.1| tRNA modification GTPase TrmE [Desulfonatronospira thiodismutans ASO3-1] Length = 466 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V L G NAGKS+L+N +G + +IVT TTR + ++ + +DT G Sbjct: 226 REGALVVLAGRVNAGKSSLMNALLGRERAIVTSIPGTTRDYLEEAINLDGLPVRLVDTAG 285 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +D + + I +D+ LV+D+ +E D+L+EI+ +L+L +NK Sbjct: 286 RRPTRDKIEMMGLETGRQLISRSDLCILVLDAGQEPAPEDLDILEEIS--PGKLVLAVNK 343 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D V Q ++ +K + + T SAT GHG +++ Sbjct: 344 QDLVSGTPGWVQ-DLKDKGLDLVHT---SATLGHGLENL 378 >gi|139474375|ref|YP_001129091.1| GTP-binding protein EngA [Streptococcus pyogenes str. Manfredo] gi|166225865|sp|A2RGB0|DER_STRPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134272622|emb|CAM30889.1| GTP-binding protein EngA [Streptococcus pyogenes str. Manfredo] Length = 436 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDIEGVTRDRIYATGEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + ++ AD++ VV S +E + + + +I R++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAQIAMEEADVIVFVV-SGKEGVTDADEYVSKILYRTNTPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 10/125 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I + +V +V+++ RE I E K +I+++N Sbjct: 238 KIYENTEKYSVMRAMRAIDRSGVVLMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCV 143 K D + Sbjct: 295 KWDTI 299 >gi|122702789|emb|CAL88584.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALDLNP 170 >gi|90194080|gb|ABD92601.1| ThdF [Lonepinella koalarum] Length = 436 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 11/170 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILI 136 + +A D ++ I +W I+ AD V L++DS +++ + E ++ S + +I Sbjct: 263 LRDATDEVERIGINRAWHEIEQADRVLLMLDSTDADSADLNKVRLEFLQKLPESLPVTII 322 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D E ++ + +I T +SA G D + +L T+ Sbjct: 323 RNKTDLSG-----ENTGLSEENGYI--TIRLSAQTQQGVDLLREHLKQTM 365 >gi|116491039|ref|YP_810583.1| GTPase [Oenococcus oeni PSU-1] gi|290890519|ref|ZP_06553594.1| hypothetical protein AWRIB429_0984 [Oenococcus oeni AWRIB429] gi|116091764|gb|ABJ56918.1| Predicted GTPase [Oenococcus oeni PSU-1] gi|290479915|gb|EFD88564.1| hypothetical protein AWRIB429_0984 [Oenococcus oeni AWRIB429] Length = 442 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 4/167 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S+ +A+VG N GKSTL NR VG + +IV TR + S+ +DT G Sbjct: 2 SKKYTIAIVGRPNVGKSTLFNRIVGTRKAIVNDISGVTRDRLYEKAEWNGSEFSVIDTGG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D + K + + IK AD + VVD H + + + K + + + L +N Sbjct: 62 ISASNDVFIKEIKEQAELAIKEADAIIFVVDGHNGITKDDQLVAKVLYRSKQPIYLAVNH 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +D ++ L+ + + + +SA G+G D+L+ + Sbjct: 122 LDNIEQHDLIYDF----YSLGLGDPYPISAVHGNGVADLLDDIVDAF 164 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 12/138 (8%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL- 75 QD +A++G N GKS++ N + SIV+ TTR V + + + + Sbjct: 175 QDQEDQIKIAIIGRPNVGKSSIFNSLIKRNRSIVSDIQGTTRDTVDSQFEDNQGNVFTIS 234 Query: 76 DTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI + +S K + + I+ AD++ +V+D+ I D K IA ++ Sbjct: 235 DTAGIRKSGKVIESTEKYAVLRAQMAIESADVILVVIDA----STGIQDQDKHIAGLATE 290 Query: 133 ----LILILNKIDCVKPE 146 +++++NK D ++ + Sbjct: 291 EGRAVVIVVNKWDAIEKD 308 >gi|332366815|gb|EGJ44556.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1059] Length = 479 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 9/132 (6%) Query: 18 DNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D +R G A++G N GKS+L+N + +IVT TTR ++ V+ K Sbjct: 234 DTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGV 293 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + +DT GI D ++ + S ++ AD+V LV+++ L LL EI++ S Sbjct: 294 PLKLIDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISQDS 352 Query: 131 SRLILILNKIDC 142 +R++L LNK D Sbjct: 353 NRIVL-LNKTDL 363 >gi|317502978|ref|ZP_07961067.1| thiophene and furan oxidation protein ThdF [Prevotella salivae DSM 15606] gi|315665914|gb|EFV05492.1| thiophene and furan oxidation protein ThdF [Prevotella salivae DSM 15606] Length = 454 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 13/138 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+N + +IV++ TTR I+ F+DT GI + Sbjct: 224 VAIVGKTNVGKSTLLNCLLHEDKAIVSNIHGTTRDIIEDTTEINGITFRFIDTAGIRKTE 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDC 142 D +L I ++ I A IV +D ++ D + E+ + +L+++ NK+DC Sbjct: 284 DYVEQLGIEKAFKKIDEASIVLWTID-----QIPTADDINEMQRLTEGKKLLIVFNKMDC 338 Query: 143 VKPERLLEQAEIANKLVF 160 L Q ++ N L F Sbjct: 339 ------LSQQQVDNHLPF 350 >gi|190171250|gb|ACE63695.1| ThdF [Escherichia vulneris] Length = 439 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 10/140 (7%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCV 143 IA+ ++L ++ NK D Sbjct: 313 IARLPAKLPITVVRNKADVT 332 >gi|27363891|ref|NP_759419.1| GTP-binding protein Der [Vibrio vulnificus CMCP6] gi|31340067|sp|Q8DF02|DER_VIBVU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27360008|gb|AAO08946.1| GTP-binding protein EngA [Vibrio vulnificus CMCP6] Length = 496 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 4/152 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR ++ ++V TR G E + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L + + + K +L++NK+D + Sbjct: 64 EEGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 + A + +++ + ++A G G Sbjct: 124 DA----DAASADFWQLGVDEMYQIAAAHGRGV 151 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 210 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 270 KVHETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 329 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + + E+ +L F++ + +SA G G Sbjct: 330 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGV 366 >gi|259907722|ref|YP_002648078.1| GTP-binding protein EngA [Erwinia pyrifoliae Ep1/96] gi|224963344|emb|CAX54829.1| GTP-binding protein [Erwinia pyrifoliae Ep1/96] gi|283477576|emb|CAY73492.1| GTP-binding protein engA [Erwinia pyrifoliae DSM 12163] gi|310764770|gb|ADP09720.1| GTP-binding protein EngA [Erwinia sp. Ejp617] Length = 498 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + + +DT G+ Sbjct: 212 LAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKRG 271 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+H + LL I L++++NK D Sbjct: 272 KVTETVEKFSVIKTLKAIEDANVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNKWD 331 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E E + +L FI+ + +SA G G ++ Y CST Sbjct: 332 GLSQEVRDEVKEALDYRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCST 383 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R ++ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADVAIAKHLRSRQKPTFIVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + A + + + + ++A+ G G +L L L PW+ Sbjct: 124 DA----DSAVVDFWSLGLGEIHPIAASHGRGVTSLLE-----LVLLPWM 163 >gi|161526321|ref|YP_001581333.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616] gi|189348964|ref|YP_001944592.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616] gi|160343750|gb|ABX16836.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616] gi|189332986|dbj|BAG42056.1| tRNA modification GTPase [Burkholderia multivorans ATCC 17616] Length = 464 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 8/175 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D ++ I +WS I+ AD+V ++DS + + D + ++ +LNK D Sbjct: 288 EDEVERIGIARTWSEIERADVVLHLLDSRTGMTAD-DDAIAARFPAGVPVVRVLNKTDLT 346 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + L + +SA +G G D + L L +A W A+ + Sbjct: 347 GVPASVAHPAAEGDLTEVH----LSAKRGDGIDLLRAEL---LRIAGWQAGAEGV 394 >gi|52145292|ref|YP_086749.1| tRNA modification GTPase TrmE [Bacillus cereus E33L] gi|196041935|ref|ZP_03109222.1| tRNA modification GTPase TrmE [Bacillus cereus NVH0597-99] gi|225867465|ref|YP_002752843.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB102] gi|229187713|ref|ZP_04314849.1| tRNA modification GTPase mnmE [Bacillus cereus BGSC 6E1] gi|81685202|sp|Q630B8|MNME_BACCZ RecName: Full=tRNA modification GTPase mnmE gi|51978761|gb|AAU20311.1| tRNA modification GTPase [Bacillus cereus E33L] gi|196027190|gb|EDX65810.1| tRNA modification GTPase TrmE [Bacillus cereus NVH0597-99] gi|225785903|gb|ACO26120.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB102] gi|228595781|gb|EEK53465.1| tRNA modification GTPase mnmE [Bacillus cereus BGSC 6E1] Length = 458 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L +L + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEELFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER++E A Sbjct: 336 TDLPQAIDMERVIELA 351 >gi|310644871|ref|YP_003949630.1| tRNA modification gtpase mnme [Paenibacillus polymyxa SC2] gi|309249822|gb|ADO59389.1| tRNA modification GTPase mnmE [Paenibacillus polymyxa SC2] Length = 458 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR ++ V+ + LDT G Sbjct: 218 REGLTTAIVGRPNVGKSSLLNTLAQGERAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + + AD++ +V++++ L + L+++I R + I+I+NK Sbjct: 278 IRETMDVVERIGVERSRTAVSEADLLLIVINANEPLHEDEMALMEQI--RGRQAIVIMNK 335 Query: 140 IDC 142 +D Sbjct: 336 MDL 338 >gi|262166779|ref|ZP_06034516.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus VM223] gi|262026495|gb|EEY45163.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus VM223] Length = 406 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 171 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 230 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 231 DAVEKIGIERAWEEIRQADRVLFMVDG 257 >gi|227518132|ref|ZP_03948181.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104] gi|227074400|gb|EEI12363.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104] Length = 465 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 13/160 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + +D++ LV++ EL LL+ A + + +++LNK Sbjct: 285 IRETEDIVERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLE--ATKGLKRVILLNK 342 Query: 140 IDC---VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D + P L E LV E+ VS G D Sbjct: 343 MDLPTKLDPNELQE-------LVPAEEILSVSVLSNTGLD 375 >gi|224372875|ref|YP_002607247.1| tRNA modification GTPase TrmE [Nautilia profundicola AmH] gi|223589292|gb|ACM93028.1| tRNA modification GTPase TrmE [Nautilia profundicola AmH] Length = 442 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+++N + + +IV+ TTR + + I +DT GI AK Sbjct: 215 IAIVGKPNVGKSSILNALLNKQRAIVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRAAK 274 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K+ + S IK ADIV V D+ E +L I + I+++NKID Sbjct: 275 DEIEKIGVERSKEAIKEADIVLAVFDAT-EFTDEDEQILNIIKESGKDTIIVINKID 330 >gi|254428001|ref|ZP_05041708.1| tRNA modification GTPase TrmE [Alcanivorax sp. DG881] gi|196194170|gb|EDX89129.1| tRNA modification GTPase TrmE [Alcanivorax sp. DG881] Length = 456 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 18/163 (11%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ ++ D Sbjct: 223 IAGKPNAGKSSLMNALAGFDAAIVTDIAGTTRDVLRESIQLDGMPLNLIDTAGLRDSADV 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSH-RELKVN-IHDLLKEIAKRSSRLIL----ILNKI 140 + IR +++ ++ AD + ++VDS E +N IH LL + ++ L L +LNK Sbjct: 283 VEQEGIRRAYAEMRKADRLLVMVDSRDSEGDINDIHSLLPQSQQQLENLELPVTVVLNKA 342 Query: 141 DCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D P E + F++SA G G + + +L Sbjct: 343 DLSGLPAGQRE-----------DGAFVISAASGDGLEALRRHL 374 >gi|218245012|ref|YP_002370383.1| GTP-binding protein EngA [Cyanothece sp. PCC 8801] gi|257058036|ref|YP_003135924.1| GTP-binding protein EngA [Cyanothece sp. PCC 8802] gi|226741133|sp|B7K1S0|DER_CYAP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218165490|gb|ACK64227.1| small GTP-binding protein [Cyanothece sp. PCC 8801] gi|256588202|gb|ACU99088.1| small GTP-binding protein [Cyanothece sp. PCC 8802] Length = 452 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N +G +IV+ TTR + ++ E +DT GI K Sbjct: 179 VAIIGRPNVGKSSLLNALLGENRAIVSPISGTTRDAIDTVIQHNEQTYRLIDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ D+V V+D+ + L I + ++L++NK D Sbjct: 239 NVEYGAEFFSINRAFKAIRRCDVVLFVIDAIDGVTDQDLKLADRIIEEGRSVVLVINKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 V + + I ++L F+E VSA G + +L + S+ Sbjct: 299 AVDKDSYTIYEYKTNIFSRLYFMEWAPIIFVSAMTGQRVNKILELVNSS 347 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 8/177 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPG-IF 81 VA++G N GKSTL NR G + +IV + T R+ G +++ QIV DT G +F Sbjct: 6 VAIIGRPNVGKSTLANRLAGDQHAIVHDEPGITRDRTYRPGFWQDRDFQIV--DTGGLVF 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + L+ S + + A VVD ++ + ++ ++L +NK Sbjct: 64 DDDTEFLPLIREQSLAALNEASAAIFVVDGQTGPTTGDLEIADWLRQQPVPVLLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 C PE L QA +L + + +S G+G ++L+ L + LP + +D+I Sbjct: 122 CESPELGLIQATQFWEL-GLGNPYPISGIHGNGTGELLDDLITYLPPPEEITQSDEI 177 >gi|170076756|ref|YP_001733394.1| GTP-binding protein EngA [Synechococcus sp. PCC 7002] gi|238692797|sp|B1XLH8|DER_SYNP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169884425|gb|ACA98138.1| GTPase of unknown function [Synechococcus sp. PCC 7002] Length = 453 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N G + +IV+ TTR + I+ Q +DT GI K Sbjct: 179 VAIIGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDTIIERNGQQYRLIDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ AD+V V+D + L I +I++ NK D Sbjct: 239 NVDYGAEFFSINRAFKAIRRADVVLFVIDVLDGVTEQDLKLAGRIIDEGRAVIIVANKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 V+ + + E+ +L F+E + +SA G + +L+ Sbjct: 299 AVEKDTYTINQYRKELQARLFFMEWAEMLFISAQTGQRVNKILD 342 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGI- 80 +A++G N GKSTLVNR G + +IV + T R+ G ++ QIV DT GI Sbjct: 5 IIAVIGRPNVGKSTLVNRIAGDQQAIVHDQPGITRDRTYRPGFWQDRNFQIV--DTGGIV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 F+ + + L+ + + A + VVD L ++ + +++ ++L +NK Sbjct: 63 FDDHEEFLPLIREQAAIALAEAAVALFVVDGQAGLNAADQEIADWLRQQNVPVVLAVNK- 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C E+ QA +L +E+ F +SA G G D+L+ + LP Sbjct: 122 -CESLEQGYTQAAEFWEL-GMEEPFPISAIHGSGTGDLLDKVIEYLP 166 >gi|29377753|ref|NP_816907.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583] gi|227555662|ref|ZP_03985709.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22] gi|257418862|ref|ZP_05595856.1| tRNA modification GTPase [Enterococcus faecalis T11] gi|46577423|sp|Q820T0|MNME_ENTFA RecName: Full=tRNA modification GTPase mnmE gi|29345221|gb|AAO82977.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583] gi|227175215|gb|EEI56187.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22] gi|257160690|gb|EEU90650.1| tRNA modification GTPase [Enterococcus faecalis T11] gi|315576168|gb|EFU88359.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309B] gi|315582978|gb|EFU95169.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309A] Length = 465 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 13/160 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + +D++ LV++ EL LL+ A + + +++LNK Sbjct: 285 IRETEDIVERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLE--ATKGLKRVILLNK 342 Query: 140 IDC---VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D + P L E LV E+ VS G D Sbjct: 343 MDLPTKLDPNELQE-------LVPAEEILSVSVLSNTGLD 375 >gi|312173198|emb|CBX81453.1| GTP-binding protein engA [Erwinia amylovora ATCC BAA-2158] Length = 499 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + + +DT G+ Sbjct: 213 LAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKRG 272 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+H + LL I L++++NK D Sbjct: 273 KVTETVEKFSVIKTLKAIEDANVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNKWD 332 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E E + +L FI+ + +SA G G ++ Y CST Sbjct: 333 GLSQEVRDEVKEALDYRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCST 384 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R ++ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADTAIAKHLRARQKPTFIVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + A + + + + ++A+ G G +L L L PW+ Sbjct: 124 DA----DSAVVDFWSLGLGEIHPIAASHGRGVTSLLE-----LVLLPWM 163 >gi|304385851|ref|ZP_07368195.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284] gi|304328355|gb|EFL95577.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284] Length = 486 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 245 RDGLATAIIGHPNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAG 304 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S ++ AD+V LV+DS L+ LL + A + + I++LNK Sbjct: 305 IHETEDKVEKIGVDRSRKALQQADLVILVLDSSVPLRDEDRQLLDQTA--NMQRIVVLNK 362 Query: 140 IDC 142 D Sbjct: 363 TDL 365 >gi|256618548|ref|ZP_05475394.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200] gi|256598075|gb|EEU17251.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200] Length = 465 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 13/160 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + +D++ LV++ EL LL+ A + + +++LNK Sbjct: 285 IRETEDIVERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLE--ATKGLKRVILLNK 342 Query: 140 IDC---VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D + P L E LV E+ VS G D Sbjct: 343 MDLPTKLDPNELQE-------LVPAEEILSVSVLSNTGLD 375 >gi|257063685|ref|YP_003143357.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Slackia heliotrinireducens DSM 20476] gi|256791338|gb|ACV22008.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Slackia heliotrinireducens DSM 20476] Length = 438 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G NAGKS+L NR +G SIV+ TTR + V +DT G+ Sbjct: 181 VAIIGRPNAGKSSLTNRLIGRDRSIVSDVAGTTRDAIDTRVEHDGKVYTIVDTAGLRRKS 240 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D + +R + I AD+ LV+D+ L + +R LI++LNK Sbjct: 241 QIDEDVEYYSYVR-AMRAIDRADVAILVMDATLGLTDQDQRVAGYANERGCALIILLNKR 299 Query: 141 DCVKPERLLE--QAEIANKLVFIE--KTFMVSATKGHGC 175 D V+ +L+ + ++ +++ F+ +SA G G Sbjct: 300 DVVESGDVLDGLREDVGDRMTFVNYAPVISISALTGKGV 338 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 5/167 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST VNR A +IV TR + +DT GI Sbjct: 6 VAVVGRPNVGKSTFVNRIAHADDAIVHEMRGVTRDRSYHNADWRGVHFTLIDTGGIEMGD 65 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + IR ++ AD++ +VD + + ++ + + K + + L++NK+D Sbjct: 66 DDAFQSSIRDQAFMAADEADVILFMVDGKTGITADDEEVARVLRKVDTPVFLLVNKMD-- 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P ++ E E + + + +S+T GHG D+L+ + + L P Sbjct: 124 NPSKMEENWEFYS--LGLGDPRSISSTHGHGTGDLLDEVVAILRELP 168 >gi|190171304|gb|ACE63722.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ A D ++ I +W I+ AD V +VD + + + Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDATDPAQIWPDF 312 Query: 126 IAKRSSRL--ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 IA+ S++L ++ NK D EQ I+ V +SA G D + N+L Sbjct: 313 IARLSAKLPITVVRNKADVTG-----EQPGISE--VNGHSLIRLSARTNEGVDVLRNHLK 365 Query: 184 STL 186 ++ Sbjct: 366 QSM 368 >gi|221201821|ref|ZP_03574858.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M] gi|221207673|ref|ZP_03580681.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2] gi|221172519|gb|EEE04958.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2] gi|221178241|gb|EEE10651.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M] Length = 464 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 8/175 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D ++ I +WS I+ AD+V ++DS + + D + ++ +LNK D Sbjct: 288 EDEVERIGIARTWSEIERADVVLHLLDSRTGMTAD-DDAIAARFPAGVPVVRVLNKTDLT 346 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + L + +SA +G G D + L L +A W A+ + Sbjct: 347 GVPASVAHPAAEGDLTEVH----LSAKRGDGIDLLRAEL---LRIAGWQAGAEGV 394 >gi|122701577|emb|CAL88178.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNLNP 170 >gi|238788166|ref|ZP_04631961.1| GTP-binding protein engA [Yersinia frederiksenii ATCC 33641] gi|238723753|gb|EEQ15398.1| GTP-binding protein engA [Yersinia frederiksenii ATCC 33641] Length = 494 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ E + + +DT G+ Sbjct: 209 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 269 KITEAVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 328 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 329 GMSEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCST 380 >gi|320157270|ref|YP_004189649.1| GTP-binding protein EngA [Vibrio vulnificus MO6-24/O] gi|319932582|gb|ADV87446.1| GTP-binding protein EngA [Vibrio vulnificus MO6-24/O] Length = 496 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 4/152 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR ++ ++V TR G E + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L + + + K +L++NK+D + Sbjct: 64 EEGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 + A + +++ + ++A G G Sbjct: 124 DA----DAASADFWQLGVDEMYQIAAAHGRGV 151 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 210 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 270 KVHETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 329 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + + E+ +L F++ + +SA G G Sbjct: 330 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGV 366 >gi|299136416|ref|ZP_07029599.1| GTP-binding proten HflX [Acidobacterium sp. MP5ACTX8] gi|298600931|gb|EFI57086.1| GTP-binding proten HflX [Acidobacterium sp. MP5ACTX8] Length = 485 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 19/175 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N GA+V T +R + +++ DT G Sbjct: 263 TVALVGYTNAGKSTLFNSLTGAEVLASERMFATLDPKLRQLTLPSRRKVLLSDTVGFL-- 320 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILIL 137 ++ H L+ R + ++ A+++ V D+ E + + +L E+ + + +L Sbjct: 321 RNLPHALVTSFRATLEEVERAELLLHVRDAASPTLDEQRSQVEAVLSELNVGEKQTLQVL 380 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 NK D + PE F T VS G G DD+L+ + + L P + Sbjct: 381 NKTDLLPPE-----------TPFAPGTIPVSGLTGAGLDDLLHAIDAALTSDPLI 424 >gi|323526572|ref|YP_004228725.1| GTP-binding proten HflX [Burkholderia sp. CCGE1001] gi|323383574|gb|ADX55665.1| GTP-binding proten HflX [Burkholderia sp. CCGE1001] Length = 395 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 20/165 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFN 82 V+LVG TNAGKSTL N A+ T + R + + ++ Q+V DT G Sbjct: 197 SVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGDEAGQVVVSDTVGFI- 255 Query: 83 AKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILI 136 ++ H+L+ R + HAD++ VVD+ ++++ ++++L I + R +L+ Sbjct: 256 -RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNEVLHAIGADTIRQVLV 314 Query: 137 LNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID V PE +E+ E N I + F+ SA G G D Sbjct: 315 FNKIDAV-PELAARGEAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|90194134|gb|ABD92628.1| ThdF [Mannheimia granulomatis] Length = 436 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLIL 135 + + D ++ I+ +W I AD V L++DS + + D L+++ K + + Sbjct: 263 LRDTGDEVERIGIKRAWDEIAQADHVLLMIDSTEQQADQFRSEWADFLEKLPKNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|331703092|ref|YP_004399779.1| tRNA modification GTPase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801647|emb|CBW53800.1| tRNA modification GTPase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 452 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 5/104 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 NS A+VG TN GKS+++N + +IVT TTR IV G ++ + + +DT Sbjct: 214 NSEGIKTAIVGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTA 273 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 GI D L I S + I AD+V VV+ K NI+DL Sbjct: 274 GIRKTSDVVENLGILKSKNLINEADLVLFVVN-----KENINDL 312 >gi|325577780|ref|ZP_08148055.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC 33392] gi|325160525|gb|EGC72651.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC 33392] Length = 452 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ ++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 199 DLVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 258 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W+ I+ AD + L++DS Sbjct: 259 IDGMPLHIIDTAGLREATDEVERIGISRAWTEIEQADRIILMLDS 303 >gi|317452849|emb|CBL87860.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ FLDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILSALNL 168 >gi|221214581|ref|ZP_03587551.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1] gi|221165471|gb|EED97947.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1] Length = 464 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 8/175 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G N GKS+L+N GA+++IVT TTR V + + + +DT G+ Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D ++ I +WS I+ AD+V ++DS + + D + ++ +LNK D Sbjct: 288 EDEVERIGIARTWSEIERADVVLHLLDSRTGMTAD-DDAIAARFPAGVPVVRVLNKTDLT 346 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + L + +SA +G G D + L L +A W A+ + Sbjct: 347 GVPASVAHPAAEGDLTEVH----LSAKRGDGIDLLRAEL---LRIAGWQAGAEGV 394 >gi|118480511|ref|YP_897662.1| tRNA modification GTPase TrmE [Bacillus thuringiensis str. Al Hakam] gi|166200468|sp|A0RLR2|MNME_BACAH RecName: Full=tRNA modification GTPase mnmE gi|118419736|gb|ABK88155.1| tRNA modification GTPase trmE [Bacillus thuringiensis str. Al Hakam] Length = 458 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L +L + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEELFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER++E A Sbjct: 336 TDLPQAIDMERVIELA 351 >gi|33239666|ref|NP_874608.1| tRNA modification GTPase TrmE [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46577393|sp|Q7VE01|MNME_PROMA RecName: Full=tRNA modification GTPase mnmE gi|33237191|gb|AAP99260.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 455 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VALVG N GKS+++N + +IVT TTR ++ + + I +DT G Sbjct: 224 RNGLKVALVGLPNVGKSSILNLLSKHERAIVTDLPGTTRDLLESEIILEGVPITLIDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + K+ + LS T+ ADIV L+ D + N +LL++I K + LI I NK Sbjct: 284 IRETNNEIEKIGVSLSQKTLFTADIVVLIFDLSKGWNKNDQNLLEKIPKGTPTLI-IGNK 342 Query: 140 IDC 142 D Sbjct: 343 ADL 345 >gi|22125256|ref|NP_668679.1| GTP-binding protein EngA [Yersinia pestis KIM 10] gi|45442513|ref|NP_994052.1| GTP-binding protein EngA [Yersinia pestis biovar Microtus str. 91001] gi|108808309|ref|YP_652225.1| GTP-binding protein EngA [Yersinia pestis Antiqua] gi|108811426|ref|YP_647193.1| GTP-binding protein EngA [Yersinia pestis Nepal516] gi|145599492|ref|YP_001163568.1| GTP-binding protein EngA [Yersinia pestis Pestoides F] gi|149365335|ref|ZP_01887370.1| putative GTP-binding protein [Yersinia pestis CA88-4125] gi|153948065|ref|YP_001400171.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 31758] gi|162419655|ref|YP_001605020.1| GTP-binding protein EngA [Yersinia pestis Angola] gi|165925991|ref|ZP_02221823.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. F1991016] gi|165937070|ref|ZP_02225635.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. IP275] gi|166008076|ref|ZP_02228974.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. E1979001] gi|166212264|ref|ZP_02238299.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. B42003004] gi|167398998|ref|ZP_02304522.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421200|ref|ZP_02312953.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423353|ref|ZP_02315106.1| GTP-binding protein EngA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023543|ref|YP_001720048.1| GTP-binding protein EngA [Yersinia pseudotuberculosis YPIII] gi|218929935|ref|YP_002347810.1| GTP-binding protein EngA [Yersinia pestis CO92] gi|229838454|ref|ZP_04458613.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895156|ref|ZP_04510332.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Pestoides A] gi|229899021|ref|ZP_04514165.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. India 195] gi|229901683|ref|ZP_04516805.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Nepal516] gi|270489878|ref|ZP_06206952.1| ribosome-associated GTPase EngA [Yersinia pestis KIM D27] gi|294504563|ref|YP_003568625.1| GTP-binding protein EngA [Yersinia pestis Z176003] gi|26006726|sp|Q8ZCT9|DER_YERPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123246587|sp|Q1CK87|DER_YERPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123372277|sp|Q1C5J2|DER_YERPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225935|sp|A4TMT3|DER_YERPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166920105|sp|A7FFZ3|DER_YERP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238687331|sp|A9R7Z8|DER_YERPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238688573|sp|B1JSA4|DER_YERPY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21958127|gb|AAM84930.1|AE013738_7 putative GTP-binding factor [Yersinia pestis KIM 10] gi|45437378|gb|AAS62929.1| putative GTP-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|108775074|gb|ABG17593.1| GTP-binding protein [Yersinia pestis Nepal516] gi|108780222|gb|ABG14280.1| putative GTP-binding protein [Yersinia pestis Antiqua] gi|115348546|emb|CAL21486.1| putative GTP-binding protein [Yersinia pestis CO92] gi|145211188|gb|ABP40595.1| GTP-binding protein [Yersinia pestis Pestoides F] gi|149291748|gb|EDM41822.1| putative GTP-binding protein [Yersinia pestis CA88-4125] gi|152959560|gb|ABS47021.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 31758] gi|162352470|gb|ABX86418.1| GTP-binding protein EngA [Yersinia pestis Angola] gi|165914933|gb|EDR33545.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. IP275] gi|165922195|gb|EDR39372.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. F1991016] gi|165992458|gb|EDR44759.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. E1979001] gi|166206195|gb|EDR50675.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. B42003004] gi|166960689|gb|EDR56710.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051502|gb|EDR62910.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057523|gb|EDR67269.1| GTP-binding protein EngA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750077|gb|ACA67595.1| small GTP-binding protein [Yersinia pseudotuberculosis YPIII] gi|229681612|gb|EEO77706.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Nepal516] gi|229687966|gb|EEO80038.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. India 195] gi|229694820|gb|EEO84867.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701918|gb|EEO89941.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Pestoides A] gi|262362442|gb|ACY59163.1| GTP-binding protein EngA [Yersinia pestis D106004] gi|262366551|gb|ACY63108.1| GTP-binding protein EngA [Yersinia pestis D182038] gi|270338382|gb|EFA49159.1| ribosome-associated GTPase EngA [Yersinia pestis KIM D27] gi|294355022|gb|ADE65363.1| GTP-binding protein EngA [Yersinia pestis Z176003] gi|320016011|gb|ADV99582.1| ferrous iron transport protein B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 495 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ + + + +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDDREYILIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 270 KITETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 330 GMTEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESVQEAYDCST 381 >gi|303239305|ref|ZP_07325833.1| ribosome-associated GTPase EngA [Acetivibrio cellulolyticus CD2] gi|302593091|gb|EFL62811.1| ribosome-associated GTPase EngA [Acetivibrio cellulolyticus CD2] Length = 440 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G NAGKS+L+N+ +G IV+ TTR + V +E + VF+DT GI Sbjct: 180 VAVIGKPNAGKSSLINKVLGEDRVIVSDIPGTTRDAIDTYVENEEGKFVFIDTAGIRRQS 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 ++ + SW+ I+ AD+ +++D+ E I E K S I+++N Sbjct: 240 KINENIERYSTIRSWTAIERADVCLIMIDAEEGVTEQDTKIAGYAHEQGKAS---IVVVN 296 Query: 139 KIDCV-KPERLLEQAE--IANKLVFI--EKTFMVSATKGHGCDDVL 179 K D V K LE+ + KL F+ +SA G + V Sbjct: 297 KWDLVEKNTGTLEEYRKTVLEKLGFMLYAPVMFISAKSGQRVNKVF 342 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKST N G ++SIV TR + V + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTFFNYLAGRRISIVEDTPGVTRDRIYTEVEWRNRKFTLIDTGGIEPY 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D + M + I+ A+++ +VD L + +++ + K +IL++NK+D Sbjct: 65 SEDKIMQQMKSQAEIAIETANVIVFMVDRKDGLTASDNEVATLLRKSKKPVILVVNKVDR 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V E E E N + I VS+ G G D+L+ + P Sbjct: 125 VG-ELPAEVYEFYN--LGIGDLMTVSSIHGLGMGDLLDEIYKYFP 166 >gi|271502718|ref|YP_003335744.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586] gi|270346273|gb|ACZ79038.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586] Length = 454 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W I+ AD V +VD V + E +A+ SRL ++ NK D Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVEPAAIWPEFMARLPSRLPITVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +E+ N I +SA G G D + ++L ++ Sbjct: 339 VTGEPLGIEE---VNTYSLIR----LSARTGDGVDLLRDHLKQSM 376 >gi|242255824|gb|ACS88896.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|229547152|ref|ZP_04435877.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322] gi|255971528|ref|ZP_05422114.1| tRNA modification GTPase [Enterococcus faecalis T1] gi|255974478|ref|ZP_05425064.1| tRNA modification GTPase [Enterococcus faecalis T2] gi|256761833|ref|ZP_05502413.1| tRNA modification GTPase [Enterococcus faecalis T3] gi|256854960|ref|ZP_05560321.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8] gi|256957036|ref|ZP_05561207.1| tRNA modification GTPase [Enterococcus faecalis DS5] gi|256960899|ref|ZP_05565070.1| tRNA modification GTPase [Enterococcus faecalis Merz96] gi|256963961|ref|ZP_05568132.1| tRNA modification GTPase [Enterococcus faecalis HIP11704] gi|257078713|ref|ZP_05573074.1| tRNA modification GTPase [Enterococcus faecalis JH1] gi|257081326|ref|ZP_05575687.1| tRNA modification GTPase [Enterococcus faecalis E1Sol] gi|257083984|ref|ZP_05578345.1| tRNA modification GTPase [Enterococcus faecalis Fly1] gi|257087814|ref|ZP_05582175.1| tRNA modification GTPase [Enterococcus faecalis D6] gi|257088459|ref|ZP_05582820.1| tRNA modification GTPase [Enterococcus faecalis CH188] gi|257421323|ref|ZP_05598313.1| tRNA modification GTPase trmE [Enterococcus faecalis X98] gi|293384792|ref|ZP_06630639.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712] gi|293388148|ref|ZP_06632672.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613] gi|294781227|ref|ZP_06746574.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1] gi|300861676|ref|ZP_07107760.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11] gi|307268891|ref|ZP_07550256.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248] gi|307273989|ref|ZP_07555199.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855] gi|307277334|ref|ZP_07558432.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134] gi|307284016|ref|ZP_07564186.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860] gi|307286637|ref|ZP_07566727.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109] gi|307296566|ref|ZP_07576387.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411] gi|312901323|ref|ZP_07760604.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470] gi|312902969|ref|ZP_07762158.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635] gi|312908837|ref|ZP_07767776.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512] gi|312952943|ref|ZP_07771799.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102] gi|312979521|ref|ZP_07791203.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516] gi|229307734|gb|EEN73721.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322] gi|255962546|gb|EET95022.1| tRNA modification GTPase [Enterococcus faecalis T1] gi|255967350|gb|EET97972.1| tRNA modification GTPase [Enterococcus faecalis T2] gi|256683084|gb|EEU22779.1| tRNA modification GTPase [Enterococcus faecalis T3] gi|256709473|gb|EEU24520.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8] gi|256947532|gb|EEU64164.1| tRNA modification GTPase [Enterococcus faecalis DS5] gi|256951395|gb|EEU68027.1| tRNA modification GTPase [Enterococcus faecalis Merz96] gi|256954457|gb|EEU71089.1| tRNA modification GTPase [Enterococcus faecalis HIP11704] gi|256986743|gb|EEU74045.1| tRNA modification GTPase [Enterococcus faecalis JH1] gi|256989356|gb|EEU76658.1| tRNA modification GTPase [Enterococcus faecalis E1Sol] gi|256992014|gb|EEU79316.1| tRNA modification GTPase [Enterococcus faecalis Fly1] gi|256995844|gb|EEU83146.1| tRNA modification GTPase [Enterococcus faecalis D6] gi|256997271|gb|EEU83791.1| tRNA modification GTPase [Enterococcus faecalis CH188] gi|257163147|gb|EEU93107.1| tRNA modification GTPase trmE [Enterococcus faecalis X98] gi|291077923|gb|EFE15287.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712] gi|291082456|gb|EFE19419.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613] gi|294451690|gb|EFG20145.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1] gi|295112327|emb|CBL30964.1| tRNA modification GTPase trmE [Enterococcus sp. 7L76] gi|300849137|gb|EFK76890.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11] gi|306495993|gb|EFM65580.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411] gi|306502266|gb|EFM71548.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109] gi|306503387|gb|EFM72636.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860] gi|306505968|gb|EFM75140.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134] gi|306509297|gb|EFM78357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855] gi|306514807|gb|EFM83357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248] gi|310625275|gb|EFQ08558.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512] gi|310629084|gb|EFQ12367.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102] gi|310633637|gb|EFQ16920.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635] gi|311287703|gb|EFQ66259.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516] gi|311291556|gb|EFQ70112.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470] gi|315026593|gb|EFT38525.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2137] gi|315030087|gb|EFT42019.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4000] gi|315033580|gb|EFT45512.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0017] gi|315036245|gb|EFT48177.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0027] gi|315143559|gb|EFT87575.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2141] gi|315148303|gb|EFT92319.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4244] gi|315151268|gb|EFT95284.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0012] gi|315152698|gb|EFT96714.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0031] gi|315155022|gb|EFT99038.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0043] gi|315158703|gb|EFU02720.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0312] gi|315163425|gb|EFU07442.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0645] gi|315165648|gb|EFU09665.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1302] gi|315172073|gb|EFU16090.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1342] gi|315174206|gb|EFU18223.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1346] gi|315579747|gb|EFU91938.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0630] gi|327536410|gb|AEA95244.1| tRNA modification GTPase TrmE [Enterococcus faecalis OG1RF] gi|329577012|gb|EGG58487.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1467] Length = 465 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 13/160 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + +D++ LV++ EL LL+ A + + +++LNK Sbjct: 285 IRETEDIVERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLE--ATKGLKRVILLNK 342 Query: 140 IDC---VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D + P L E LV E+ VS G D Sbjct: 343 MDLPTKLDPNELQE-------LVPAEEILSVSVLSNTGLD 375 >gi|19703515|ref|NP_603077.1| GTP-binding protein EngA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|26006718|sp|Q8RGV7|DER_FUSNN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|19713605|gb|AAL94376.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 440 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 3/134 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +++ +A++G NAGKS+LVN+ G + +IV+ TTR + ++ K+++ + Sbjct: 168 DFPEEDEEVLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYM 227 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT GI ++S + + IK AD+ L++D+ L + A+ Sbjct: 228 IIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEEL 287 Query: 131 SRLILILNKIDCVK 144 +I+++NK D V+ Sbjct: 288 KPIIIVMNKWDLVE 301 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL N VG K++IV TR + S+ V +DT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L +EIA K++ +IL + Sbjct: 65 NDF--LMAKIKEQAEVAMNEADVILFVVDG----KSGLNPLDEEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|163943164|ref|YP_001648048.1| tRNA modification GTPase TrmE [Bacillus weihenstephanensis KBAB4] gi|229136309|ref|ZP_04265056.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST196] gi|205829111|sp|A9VTM0|MNME_BACWK RecName: Full=tRNA modification GTPase mnmE gi|163865361|gb|ABY46420.1| tRNA modification GTPase TrmE [Bacillus weihenstephanensis KBAB4] gi|228647181|gb|EEL03269.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST196] Length = 458 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 7/143 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGISTAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDIVERIGVERSKEMMSQADLVLIVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 IDC---VKPERLLEQAEIANKLV 159 D + ER+ + A + N+++ Sbjct: 336 TDLPQEIDMERVTDLA-VGNRVI 357 >gi|313885592|ref|ZP_07819342.1| tRNA modification GTPase TrmE [Eremococcus coleocola ACS-139-V-Col8] gi|312619322|gb|EFR30761.1| tRNA modification GTPase TrmE [Eremococcus coleocola ACS-139-V-Col8] Length = 459 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 6/145 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+NR G +IVT TTR + +V+ + + +DT GI ++ Sbjct: 226 IVGRPNVGKSSLLNRLTGWDKAIVTDIEGTTRDTIEEMVNVRGVPLKLIDTAGIRQTEEV 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + S ++ AD+V L+++ +L+ +LLK A + + I++LNK D P Sbjct: 286 VEKIGVERSRKALEEADLVILILNQAEDLQEVDLELLK--ASQGKKRIILLNKQDL--PS 341 Query: 147 RLLEQ--AEIANKLVFIEKTFMVSA 169 +L AE + IE + + A Sbjct: 342 QLDRNALAESSGTATIIETSMLEEA 366 >gi|308071639|ref|YP_003873244.1| tRNA modification GTPase trmE [Paenibacillus polymyxa E681] gi|305860918|gb|ADM72706.1| Probable tRNA modification GTPase trmE [Paenibacillus polymyxa E681] Length = 458 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR ++ V+ + LDT G Sbjct: 218 REGLTTAIVGRPNVGKSSLLNTLAQGERAIVTDIPGTTRDVIEEYVTINSIPLKLLDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + + AD++ +V++++ L + L+++I R + I+I+NK Sbjct: 278 IRETMDVVERIGVERSRTAVSEADLLLIVINANEPLHEDEMALMEQI--RGRQAIVIMNK 335 Query: 140 IDC 142 +D Sbjct: 336 MDL 338 >gi|300115604|ref|YP_003762179.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113] gi|299541541|gb|ADJ29858.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113] Length = 459 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L NR G + +IVT TTR ++R V+ I DT G+ +++ Sbjct: 228 VVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLREHVTIDGLPIHLSDTAGLHDSR 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + +R + + HAD V LV D L +L E+ + LI NK+D Sbjct: 288 DTIEQEGMRRTREELTHADHVLLVADDQSGLTEVEQAILDELPDNVT-YTLIFNKVD 343 >gi|294784590|ref|ZP_06749879.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_27] gi|294487806|gb|EFG35165.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_27] Length = 440 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 3/134 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +++ +A++G NAGKS+LVN+ G + +IV+ TTR + ++ K+++ + Sbjct: 168 DFPEEDEEVLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYM 227 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT GI ++S + + IK AD+ L++D+ L + A+ Sbjct: 228 IIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEEL 287 Query: 131 SRLILILNKIDCVK 144 +I+++NK D V+ Sbjct: 288 KPIIIVMNKWDLVE 301 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG K++IV TR + S+ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L +EIA K++ +IL + Sbjct: 65 NDF--LMAKIKEQAEVAMNEADVILFVVDG----KSGLNPLDEEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|229065143|ref|ZP_04200436.1| tRNA modification GTPase mnmE [Bacillus cereus AH603] gi|228716172|gb|EEL67891.1| tRNA modification GTPase mnmE [Bacillus cereus AH603] Length = 458 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 7/143 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGISTAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDIVERIGVERSKEMMSQADLVLIVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 IDC---VKPERLLEQAEIANKLV 159 D + ER+ + A + N+++ Sbjct: 336 TDLPQEIDMERVTDLA-VGNRVI 357 >gi|122702865|emb|CAL88622.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ++ A + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLNP 170 >gi|152979629|ref|YP_001345258.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z] gi|205829052|sp|A6VQS6|MNME_ACTSZ RecName: Full=tRNA modification GTPase mnmE gi|150841352|gb|ABR75323.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z] Length = 452 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 50/87 (57%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V L++DS Sbjct: 277 DEVERIGITRAWNEIEQADRVLLMLDS 303 >gi|30265502|ref|NP_847879.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Ames] gi|49188321|ref|YP_031574.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Sterne] gi|49480475|ref|YP_039474.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196974|ref|YP_052661.1| tRNA modification GTPase TrmE [Bacillus anthracis str. 'Ames Ancestor'] gi|65317465|ref|ZP_00390424.1| COG0486: Predicted GTPase [Bacillus anthracis str. A2012] gi|165873022|ref|ZP_02217643.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0488] gi|167635055|ref|ZP_02393372.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0442] gi|167641744|ref|ZP_02399987.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0193] gi|170689483|ref|ZP_02880673.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0465] gi|170707531|ref|ZP_02897984.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0389] gi|177655270|ref|ZP_02936824.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0174] gi|190569290|ref|ZP_03022184.1| tRNA modification GTPase TrmE [Bacillus anthracis Tsiankovskii-I] gi|196036118|ref|ZP_03103518.1| tRNA modification GTPase TrmE [Bacillus cereus W] gi|196045402|ref|ZP_03112633.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB108] gi|218906676|ref|YP_002454510.1| tRNA modification GTPase TrmE [Bacillus cereus AH820] gi|227818253|ref|YP_002818262.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CDC 684] gi|228918096|ref|ZP_04081624.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930490|ref|ZP_04093490.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936764|ref|ZP_04099555.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949206|ref|ZP_04111474.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094595|ref|ZP_04225662.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-42] gi|229124987|ref|ZP_04254161.1| tRNA modification GTPase mnmE [Bacillus cereus 95/8201] gi|229600776|ref|YP_002869693.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0248] gi|254687075|ref|ZP_05150933.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CNEVA-9066] gi|254724142|ref|ZP_05185927.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A1055] gi|254735159|ref|ZP_05192869.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Western North America USA6153] gi|254742132|ref|ZP_05199819.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Kruger B] gi|254755958|ref|ZP_05207990.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Vollum] gi|254761362|ref|ZP_05213384.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Australia 94] gi|301056958|ref|YP_003795169.1| tRNA modification GTPase TrmE [Bacillus anthracis CI] gi|46577421|sp|Q81JD9|MNME_BACAN RecName: Full=tRNA modification GTPase mnmE gi|81394076|sp|Q6HAF2|MNME_BACHK RecName: Full=tRNA modification GTPase mnmE gi|30260180|gb|AAP29365.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Ames] gi|49182248|gb|AAT57624.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Sterne] gi|49332031|gb|AAT62677.1| tRNA modification GTPase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50083036|gb|AAT70169.1| tRNA modification GTPase TrmE [Bacillus anthracis str. 'Ames Ancestor'] gi|164711234|gb|EDR16790.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0488] gi|167510298|gb|EDR85701.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0193] gi|167529529|gb|EDR92279.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0442] gi|170127527|gb|EDS96401.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0389] gi|170666585|gb|EDT17358.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0465] gi|172080197|gb|EDT65289.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0174] gi|190559597|gb|EDV13588.1| tRNA modification GTPase TrmE [Bacillus anthracis Tsiankovskii-I] gi|195991285|gb|EDX55253.1| tRNA modification GTPase TrmE [Bacillus cereus W] gi|196023609|gb|EDX62285.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB108] gi|218538645|gb|ACK91043.1| tRNA modification GTPase TrmE [Bacillus cereus AH820] gi|227004482|gb|ACP14225.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CDC 684] gi|228658488|gb|EEL14154.1| tRNA modification GTPase mnmE [Bacillus cereus 95/8201] gi|228688842|gb|EEL42673.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-42] gi|228810489|gb|EEM56842.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822973|gb|EEM68814.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829209|gb|EEM74846.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841576|gb|EEM86692.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265184|gb|ACQ46821.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0248] gi|300379127|gb|ADK08031.1| tRNA modification GTPase TrmE [Bacillus cereus biovar anthracis str. CI] Length = 458 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L +L + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSETLTNEDEELFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER++E A Sbjct: 336 TDLPQAIDMERVIELA 351 >gi|311696589|gb|ADP99462.1| tRNA modification GTPase TrmE [marine bacterium HP15] Length = 468 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ ++ Sbjct: 231 VVIGGRPNAGKSSLLNALAGREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSP 290 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+ AD + L+VD+ K + H++ + + ++ + +I NK+D Sbjct: 291 DEVEQIGIARAWEEIRQADRILLMVDATTTEKTSPHEIWPDFIDQLPANAPVTVIRNKVD 350 >gi|229550722|ref|ZP_04439447.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200] gi|229304155|gb|EEN70151.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200] Length = 465 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 13/160 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + +D++ LV++ EL LL+ A + + +++LNK Sbjct: 285 IRETEDIVERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLE--ATKGLKRVILLNK 342 Query: 140 IDC---VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D + P L E LV E+ VS G D Sbjct: 343 MDLPTKLDPNELQE-------LVPAEEILSVSVLSNTGLD 375 >gi|190171214|gb|ACE63677.1| ThdF [Enterobacter helveticus] Length = 427 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 19/184 (10%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ A D ++ I +W I+ AD V +VD V+ + + Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQIWPDF 312 Query: 127 AKRSSR---LILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + + ++ NK D +P L E V +SA G G + + ++L Sbjct: 313 MARLPQNLPITVVRNKADVTGEPAGLSE--------VNGHSLIRLSARSGEGVEVLRDHL 364 Query: 183 CSTL 186 S++ Sbjct: 365 KSSM 368 >gi|170694785|ref|ZP_02885936.1| GTP-binding proten HflX [Burkholderia graminis C4D1M] gi|170140416|gb|EDT08593.1| GTP-binding proten HflX [Burkholderia graminis C4D1M] Length = 404 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 20/165 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFN 82 V+LVG TNAGKSTL N A+ T + R + + ++ Q+V DT G Sbjct: 206 SVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGDEAGQVVVSDTVGFI- 264 Query: 83 AKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILI 136 ++ H+L+ R + HAD++ VVD+ ++++ ++++L I + R +L+ Sbjct: 265 -RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNEVLHAIGADTIRQVLV 323 Query: 137 LNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID V PE +E+ E N I + F+ SA G G D Sbjct: 324 FNKIDAV-PELAARGEAVERDEYGN----ISRVFL-SARTGQGLD 362 >gi|122702193|emb|CAL88287.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFSISVSHNRGISALIDAILSALDLNP 170 >gi|42560644|ref|NP_975095.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400855|sp|Q6MUE7|MNME_MYCMS RecName: Full=tRNA modification GTPase mnmE gi|42492140|emb|CAE76737.1| tRNA modification GTPase, TrmE [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320928|gb|ADK69571.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 452 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 NS A++G TN GKS+++N + +IVT TTR IV G ++ + + +DT Sbjct: 214 NSEGIKTAIIGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTA 273 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL----LKEIAKRSSRLI 134 GI D L I S + I AD+V VV+ K NI+DL + E+ K + I Sbjct: 274 GIRKTSDVVENLGILKSKNLINEADLVLFVVN-----KENINDLDNQEIFELLKNKTY-I 327 Query: 135 LILNK 139 LI+NK Sbjct: 328 LIVNK 332 >gi|308176963|ref|YP_003916369.1| GTP-binding protein EngA [Arthrobacter arilaitensis Re117] gi|307744426|emb|CBT75398.1| GTP-binding protein EngA [Arthrobacter arilaitensis Re117] Length = 510 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR +G + ++V TR V +DT G + Sbjct: 74 VLAVIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYSAEWMGRPFTIVDTGGWEHD 133 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + AD + VVDSH ++K + K+ + L+ NK+D Sbjct: 134 AKGIHASVADQAEIAADVADAILFVVDSHVGATATDEAVVKMLRKKGKPVFLVANKVDDF 193 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E +A + L F + + VSA G G D+L+ + LP Sbjct: 194 NQE---AEAAVLWGLGF-GQPWPVSALHGRGTADLLDAVMEKLP 233 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 20/175 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VAL+G N GKS+L+N+ G++ +V TTR V +V F+DT GI Sbjct: 250 VALIGRPNVGKSSLLNKVAGSERVVVDEYAGTTRDPVDELVELGGEIWRFVDTAGIRRRQ 309 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLIL 135 D Y L + + ++ A++ +++ ++ E V I L E + +++ Sbjct: 310 HMAVGSDYYASLRTQ---TALEKAEVAVILLAANEIISEQDVRIIQLAIEAGR---AMVI 363 Query: 136 ILNKIDCVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 + NK D V +R L+Q EI L IE +SA G D ++ L + L Sbjct: 364 VYNKWDEVDEDRRYYLDQ-EIERDLAHIEWAPRVNISAKTGWHKDKLVPALNTAL 417 >gi|298372710|ref|ZP_06982700.1| tRNA modification GTPase TrmE [Bacteroidetes oral taxon 274 str. F0058] gi|298275614|gb|EFI17165.1| tRNA modification GTPase TrmE [Bacteroidetes oral taxon 274 str. F0058] Length = 464 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 8/125 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TN GKSTL+N + + +IV+ TTR + + F+DT GI Sbjct: 228 VALVGKTNVGKSTLLNSLLNEERAIVSDVHGTTRDSIEDSIVIDGVTFRFIDTAGIRTTT 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKID 141 D L I ++ I A+IV +VD+ + D+ ++I + S S+ IL++NK+D Sbjct: 288 DEVENLGIERTYRKIDEAEIVLWIVDATQ-----TSDIKEDIEQNSLNLSKTILVINKLD 342 Query: 142 CVKPE 146 + + Sbjct: 343 KISDD 347 >gi|52424535|ref|YP_087672.1| tRNA modification GTPase TrmE [Mannheimia succiniciproducens MBEL55E] gi|81387495|sp|Q65VC3|MNME_MANSM RecName: Full=tRNA modification GTPase mnmE gi|52306587|gb|AAU37087.1| ThdF protein [Mannheimia succiniciproducens MBEL55E] Length = 454 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 50/87 (57%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V L++DS Sbjct: 279 DEVERIGITRAWNEIEQADRVILMLDS 305 >gi|311899123|dbj|BAJ31531.1| putative GTP-binding protein EngA [Kitasatospora setae KM-6054] Length = 484 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V + TR V + LDT G Sbjct: 46 VLAIVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVSYEAMWAGRRFKVLDTGGWEID 105 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 ++ + I+ AD V VVD+ + + D L + +RS + ++L NK+D Sbjct: 106 VLGLDAMVAGQAELGIEQADAVLFVVDA-KVGATDTEDALVRLIRRSGKPVVLCANKVDG 164 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P E A + + + + + + VSA G G D+L+ + LP AP Sbjct: 165 --PSTEAEAAYLWS--LGLGEPYPVSALHGRGSGDLLDAVLKVLPEAP 208 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 12/146 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VAL+G N GKS+L+N+ G +V TTR V ++ F+DT GI Sbjct: 224 VALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGKTWKFIDTAGIRRRV 283 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L R S + + A++ ++VD+ L ++ + +++ N Sbjct: 284 HQTAGADFYASL--RTS-AALDKAEVAVVLVDASETLAEQDTRIISMAVEAGRAVVIAYN 340 Query: 139 KIDCVKPER--LLEQAEIANKLVFIE 162 K D + ER LE+ EI LV ++ Sbjct: 341 KWDQLDEERRFYLER-EIERDLVQVQ 365 >gi|259419101|ref|ZP_05743018.1| ribosome-associated GTPase EngA [Silicibacter sp. TrichCH4B] gi|259345323|gb|EEW57177.1| ribosome-associated GTPase EngA [Silicibacter sp. TrichCH4B] Length = 492 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V + TR + G + + +D+ G+ +A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLEDA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 D S M RL+ ++ AD+ ++D+ + + + K+S+ +IL NK Sbjct: 64 TDNSLEGRMRRLTERAVEMADVCLFIIDARAGVTPTDEMFAEILRKKSAHVILAANK 120 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 22/188 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + TR + + + + DT G+ Sbjct: 209 VAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLKIDWSGTPMRIFDTAGMRKKA 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 269 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVVVAVNK 326 Query: 140 --IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 I+ K E+L E +L+ + VSA G G D DV N Sbjct: 327 WDIEDEKQEKLKALKEAFERLLPQLRGAPLVTVSAKTGRGLDRLHAAIMKAHDVWNRRVP 386 Query: 185 TLPLAPWV 192 T L W+ Sbjct: 387 TAALNRWL 394 >gi|251791811|ref|YP_003006532.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591] gi|247540432|gb|ACT09053.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591] Length = 454 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAG 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRL--ILILNKID 141 D ++ I +W I+ AD V +VD V + E +A+ SRL ++ NK D Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVEPAAIWPEFMARLPSRLPITVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +E+ N I +SA G G D + ++L ++ Sbjct: 339 VTGEPLGIEE---VNTYSLIR----LSARTGDGVDLLRDHLKQSM 376 >gi|224541282|ref|ZP_03681821.1| hypothetical protein CATMIT_00442 [Catenibacterium mitsuokai DSM 15897] gi|224525786|gb|EEF94891.1| hypothetical protein CATMIT_00442 [Catenibacterium mitsuokai DSM 15897] Length = 445 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N + +IVT TTR +V G + + + +DT GI +D Sbjct: 223 IVGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDVVEGSIRLNDIVLNMIDTAGIRETEDK 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID--CV 143 + ++ S S I AD+V +V+D R ++ +LL E + +R++LI NK D CV Sbjct: 283 IEHMGVKKSLSLIDQADLVLVVLDGSRPIEAEDKELL-ERTEGLNRIVLI-NKSDKGCV 339 >gi|254478784|ref|ZP_05092152.1| putative GTPase [Carboxydibrachium pacificum DSM 12653] gi|214035296|gb|EEB76002.1| putative GTPase [Carboxydibrachium pacificum DSM 12653] Length = 439 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 10/169 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 VA+VG N GKSTL NR + ++SIV TR + G + + +DT G+ Sbjct: 4 AMVAIVGRPNVGKSTLFNRILKRRISIVEDIPGVTRDRIYGNAEWLNRKFILVDTGGLDP 63 Query: 82 NAKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + KD + K+ +++ + I+ AD++ VVD+ L ++ + K +IL+ NK+ Sbjct: 64 DPKDVIFSKVKLQVE-AAIEAADLILFVVDAREGLVPEDEEIANMLRKTKKEVILVCNKV 122 Query: 141 DCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D K P + ++ + + +SA+ G G ++L+ + LP Sbjct: 123 DSFKEMPASFYDFFKLG-----LGEPIPISASNGLGIGELLDEVIKRLP 166 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+LVNR +G + IV+ TTR + ++ + +DT GI Sbjct: 179 IAVIGRPNVGKSSLVNRILGEERVIVSDIPGTTRDAIDTPFTKDGRNYILIDTAGIRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + + + I+ ADI L++D+ + + +I+++NK D Sbjct: 239 RISESIERYSVLRALAAIERADICLLMIDATEGPTEQDTKIAGYAFENGKGIIILVNKWD 298 Query: 142 CVKPER--LLEQAE-IANKLVFIE--KTFMVSATKGHGCDDVL 179 V+ + E E I KL FI +SA G VL Sbjct: 299 IVEKDSNTYKEYTEMIREKLAFISFAPILFISAKTGQRIHKVL 341 >gi|171920547|ref|ZP_02931819.1| GTP-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903244|gb|EDT49533.1| GTP-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 175 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 208 AEITREKLFLHLHKEIPYSSCV-VTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQN 266 AE RE+ L+L+ E+P+ V + E ++ +I+ I +E+ S K I++G+NG Sbjct: 68 AETIREQCLLNLNHEVPHGVGVEIDESKYNQEANHWIIKASIIIEKNSHKPIVIGQNGAM 127 Query: 267 IKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 IK IS+ A+K++ EI + + L +FVKV+ +W Sbjct: 128 IKKISMAARKQLHEIYDCHISLTIFVKVENNW 159 >gi|161486654|ref|NP_933563.2| GTP-binding protein EngA [Vibrio vulnificus YJ016] gi|41016999|sp|Q7MNE7|DER_VIBVY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 496 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 4/152 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR ++ ++V TR G E + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L + + + K +L++NK+D + Sbjct: 64 EEGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 + A + +++ + ++A G G Sbjct: 124 DA----DAASADFWQLGVDEMYQIAAAHGRGV 151 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 210 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 270 KVHETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 329 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + + E+ +L F++ + +SA G G Sbjct: 330 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGV 366 >gi|294012485|ref|YP_003545945.1| GTP-binding protein EngA [Sphingobium japonicum UT26S] gi|292675815|dbj|BAI97333.1| GTP-binding protein EngA [Sphingobium japonicum UT26S] Length = 456 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 13/174 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-----GIVSEKESQIVFLDTPG 79 +A+VG NAGKSTL+NR +G + + TR + E + +DT G Sbjct: 187 LAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWQWTDPDGNERPVRLIDTAG 246 Query: 80 I---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + +D KL + + + A++V L++DS R L+ + ++ + L++ Sbjct: 247 MRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLLLDSTRGLEAQDLRIADKVIEEGRALVVA 306 Query: 137 LNKIDCVKPERLLEQA---EIANKLVFIEKT--FMVSATKGHGCDDVLNYLCST 185 LNK D V+ L Q +++ L I VSA G G DD++ T Sbjct: 307 LNKWDTVENGSALYQGIKQALSDGLAQIRGVPIMTVSAATGKGLDDLIRVAFET 360 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 9/124 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V + TR G + +DT G + Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGQANLLGVDFTIIDTAGYEDE 63 Query: 84 KDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK----RSSRLILILN 138 +R+ + + +++AD+ VVD+ + I L +EIA+ + ++L+ N Sbjct: 64 DPQTLPGRMRMQTQAAVENADVALFVVDA----RAGITPLDEEIARWLREGDAPVVLMAN 119 Query: 139 KIDC 142 K + Sbjct: 120 KAEG 123 >gi|288958341|ref|YP_003448682.1| GTP-binding protein [Azospirillum sp. B510] gi|288910649|dbj|BAI72138.1| GTP-binding protein [Azospirillum sp. B510] Length = 426 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R + +++ DT G + Sbjct: 194 VVALVGYTNAGKSTLFNRLANADVFAQDLLFATLDPTMRQVTLPSGRKVILSDTVGFIS- 252 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLV-----VDSHRELKVNIHDLLKEIA---KRSSRL 133 D H L+ R + + ADI+ V +DS + K ++H++L ++ + R+ Sbjct: 253 -DLPHGLVAAFRATLEEVDAADIILHVRDIAHIDSEAQ-KADVHEVLSDMGIDPEIDDRV 310 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 I +LNKID + E +A I + + VSA G G DD+ Sbjct: 311 IEVLNKIDALDEE---SRAAILVQTGRNPRAVAVSALSGEGIDDL 352 >gi|229515956|ref|ZP_04405413.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA 21] gi|229347056|gb|EEO12018.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA 21] Length = 453 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 14/163 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D+ K+ I +W I+ AD V +VD + D+ + + + + +I NK D Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKAD 337 Query: 142 CVKPERLLEQAEI--ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E EI N+ I +SA G G D + +L Sbjct: 338 QTG-----EPLEICHVNQPTLIR----LSAKTGQGVDALRQHL 371 >gi|227328550|ref|ZP_03832574.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 454 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LILILNKID 141 D ++ I +W I+ AD V +VD + E R + + ++ NK D Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +E V +SA G G D + ++L ++ Sbjct: 339 VTGEALGIED-------VNTHSLIRLSARTGEGIDTLRDHLKQSM 376 >gi|122701595|emb|CAL88187.1| GTPase [Helicobacter pylori] gi|122702771|emb|CAL88575.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDLNP 170 >gi|122702849|emb|CAL88614.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDLNP 170 >gi|157371840|ref|YP_001479829.1| GTP-binding protein EngA [Serratia proteamaculans 568] gi|166920103|sp|A8GHW1|DER_SERP5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157323604|gb|ABV42701.1| small GTP-binding protein [Serratia proteamaculans 568] Length = 494 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + ++ + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADLGIAQHLRNRQKATFLVANKTDGM 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + LL I L++++NK D Sbjct: 270 KVTETVEKFSVIKTLQAIEDANVVLLVVDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL-----NYLCST 185 + E E+ + +L F++ + +SA G G ++ Y C+T Sbjct: 330 GMSEEDRDHVKEMLDLRLGFVDFARIHFISALHGSGVGNLFVSVLEAYECAT 381 >gi|20808046|ref|NP_623217.1| GTP-binding protein EngA [Thermoanaerobacter tengcongensis MB4] gi|26006716|sp|Q8R9J1|DER_THETN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|20516626|gb|AAM24821.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4] Length = 439 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 10/169 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 VA+VG N GKSTL NR + ++SIV TR + G + + +DT G+ Sbjct: 4 AMVAIVGRPNVGKSTLFNRILKRRISIVEDIPGVTRDRIYGNAEWLNRKFILVDTGGLDP 63 Query: 82 NAKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + KD + K+ +++ + I+ AD++ VVD+ L ++ + K +IL+ NK+ Sbjct: 64 DPKDVIFSKVKLQVE-AAIEAADLILFVVDAREGLVPEDEEIANMLRKTKKEVILVCNKV 122 Query: 141 DCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D K P + ++ + + +SA+ G G ++L+ + LP Sbjct: 123 DSFKEMPASFYDFFKLG-----LGEPIPISASNGLGIGELLDEVIKRLP 166 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+LVNR +G + IV+ TTR + ++ + +DT GI Sbjct: 179 IAVIGRPNVGKSSLVNRILGEERVIVSDIPGTTRDAIDTPFTKDGRNYILIDTAGIRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + + + I+ ADI L++D+ + + +I+++NK D Sbjct: 239 RISESIERYSVLRALAAIERADICLLMIDATEGPTEQDTKIAGYAFENGKGIIILVNKWD 298 Query: 142 CVKPER--LLEQAE-IANKLVFIE--KTFMVSATKGHGCDDVL 179 V+ + E E I KL FI +SA G VL Sbjct: 299 IVEKDSNTYKEYTEMIREKLAFISFAPILFISAKTGQRIHKVL 341 >gi|292489043|ref|YP_003531930.1| GTP-binding protein engA [Erwinia amylovora CFBP1430] gi|292900172|ref|YP_003539541.1| GTP-binding protein [Erwinia amylovora ATCC 49946] gi|291200020|emb|CBJ47145.1| GTP-binding protein [Erwinia amylovora ATCC 49946] gi|291554477|emb|CBA22001.1| GTP-binding protein engA [Erwinia amylovora CFBP1430] Length = 499 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + + +DT G+ Sbjct: 213 LAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKRG 272 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+H + LL I L++++NK D Sbjct: 273 KVTETVEKFSVIKTLKAIEDANVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNKWD 332 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E E + +L FI+ + +SA G G ++ Y CST Sbjct: 333 GLSQEVRDEVKEALDYRLGFIDFARIHFISALHGSGVGNLFESVTEAYDCST 384 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R ++ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADTAIAKHLRARQKPTFIVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + A + + + + ++A+ G G +L L L PW+ Sbjct: 124 DA----DSAVVDFWSLGLGEIHPIAASHGRGVTSLLE-----LVLLPWM 163 >gi|187918374|ref|YP_001883937.1| GTP-binding protein EngA [Borrelia hermsii DAH] gi|119861222|gb|AAX17017.1| GTP-binding protein [Borrelia hermsii DAH] Length = 438 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 89/163 (54%), Gaps = 5/163 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N GKSTL N+ + + SI TR +V+ + + + +D G Sbjct: 11 SVLIAGRPNVGKSTLFNKLLSSNRSITDEVYGVTRDLVKEVCTVDSYKFYLIDAGGFTLL 70 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D ++++ S + D++ LV+D + E+ + ++L++++ K S +++L+LNKID Sbjct: 71 RDELSRIVVNKVISLLDSIDLILLVLDVN-EMLLEDYELIEKLRKYSDKIVLVLNKIDSN 129 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E L + + KL F +K+F+VSAT G G + + +L +++ Sbjct: 130 HKEVLTYEFQ---KLGF-KKSFLVSATHGKGINSLRIFLKNSV 168 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 5/123 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + ++G N+GKSTL+N G +VSIV+ TTR ++ +DT GI + Sbjct: 181 IGIIGKPNSGKSTLINFLAGDEVSIVSPIAGTTRDFIKARFQRNGKIFELIDTAGI-RRR 239 Query: 85 DSYHKLMIRLSWS----TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++L+ S S I DIV L+VD EL + KR +I++ K Sbjct: 240 ARVNELVEHYSVSRALRVIDMVDIVFLLVDVKEELTAQDKKIAHYATKRGKGIIIVFTKW 299 Query: 141 DCV 143 D V Sbjct: 300 DLV 302 >gi|332361128|gb|EGJ38932.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1056] Length = 479 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 243 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 302 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI++ S+R++L LNK Sbjct: 303 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISQDSNRIVL-LNK 360 Query: 140 IDC 142 D Sbjct: 361 TDL 363 >gi|312128144|ref|YP_003993018.1| ribosome-associated gtpase enga [Caldicellulosiruptor hydrothermalis 108] gi|311778163|gb|ADQ07649.1| ribosome-associated GTPase EngA [Caldicellulosiruptor hydrothermalis 108] Length = 440 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 15/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL NR +G + +IV TR + G + +DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPY 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILN 138 ++D K M R + I +D++ +VD K + D +E+A R+S+ ++L +N Sbjct: 64 SEDIILKQMRRQAQFAIDMSDVIIFMVDG----KTGLTDADREVANMLRTSKKPIVLAVN 119 Query: 139 KIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID + + ++ E E+ + +SA G G DVL+ + + L Sbjct: 120 KIDNISQQAMIYEFYELG-----LSDPIAMSAEHGTGVGDVLDAVVNYL 163 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 10/157 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+LVN +G + IV+ TTR + + I +DT G+ Sbjct: 178 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEGIPITLIDTAGLRRKS 237 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + M+R + I+ +DI +++D + + + I+ +NK Sbjct: 238 KIYDNVERYSMLR-TLQAIERSDICIILLDGTENVSEQDAKVAGYAYEAGKGCIVAVNKW 296 Query: 141 DCV-KPERLLEQ--AEIANKLVFIE--KTFMVSATKG 172 D V K E+ ++ +I KL F++ +SA G Sbjct: 297 DAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTG 333 >gi|311086570|gb|ADP66651.1| GTP-binding protein Era [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 209 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 1/137 (0%) Query: 157 KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLF 216 K+ FIE +SA K + N + S LP +Y ++ F +EI RE+L Sbjct: 71 KIDFIE-ILPISAKKISNLILLKNIIKSYLPENCHIYPECYVTTNSDFFTVSEIIREQLI 129 Query: 217 LHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKK 276 L L E+P V E +++K+ ++ I+ +I+V+ QK I++G NG+ IK IS+ ++ Sbjct: 130 LFLGDELPSIIKVEIESFKKKEKIALYIKAIIWVKNVRQKSIVIGHNGEKIKKISMISRN 189 Query: 277 EIAEILEQPVHLILFVK 293 I + HL+L+VK Sbjct: 190 NIEKKFYIKTHLVLWVK 206 >gi|253690652|ref|YP_003019842.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495843|sp|C6DK97|MNME_PECCP RecName: Full=tRNA modification GTPase mnmE gi|251757230|gb|ACT15306.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 454 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LILILNKID 141 D ++ I +W I+ AD V +VD + E R + + ++ NK D Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +E V +SA G G D + ++L ++ Sbjct: 339 VTGETLGIED-------VNTHSLIRLSARTGDGVDTLRDHLKQSM 376 >gi|222151373|ref|YP_002560529.1| GTP-binding protein EngA [Macrococcus caseolyticus JCSC5402] gi|254783159|sp|B9E6L5|DER_MACCJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222120498|dbj|BAH17833.1| GTP-binding protein EngA [Macrococcus caseolyticus JCSC5402] Length = 436 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 TIAIVGRANVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIELG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + I+ AD++ +V+ R+ N D + ++ +SS+ ++L +NKID Sbjct: 65 DEPFQEQIRAQAEIAIEEADVIIFMVNG-RDGITNEDDFVAKLLFKSSKPVVLGVNKID- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E + L F E F +S + G G D+L+ P Sbjct: 123 -NPEMRADIYEFYS-LGFGEP-FPISGSHGLGIGDLLDEAAKHFP 164 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG------ 79 +L+G N GKS+L+N +G + IV+ TTR + + + + + V +DT G Sbjct: 179 SLIGRPNVGKSSLINAILGEERVIVSPVAGTTRDAIDTVYTFENQEYVMIDTAGMRKKGK 238 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++ A + Y L + I+ +++V +V+D+ + + + +++++NK Sbjct: 239 VYEATERYSVLR---ALKAIERSNVVLVVIDAEEGIIEQDKKIAGYAHEAGKAIVIVVNK 295 Query: 140 IDCVK 144 D V+ Sbjct: 296 WDTVE 300 >gi|122702217|emb|CAL88299.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNLNP 170 >gi|260905263|ref|ZP_05913585.1| GTP-binding protein EngA [Brevibacterium linens BL2] Length = 503 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A+VG N GKSTLVNR +G + ++V TR V + +DT G + Sbjct: 68 VLAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYRAEWNTKEFTLVDTGGWDSD 127 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +K ++ I+ S + AD V LVVD+ ++K + ++ +IL NK+D Sbjct: 128 SKGMASRIAIQ-SEVAVDMADAVVLVVDATTGPTATDEMVVKMLRRKKKPVILAANKVDD 186 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E L AE+ + + + F VS G G D+L+ + + LP Sbjct: 187 ERGE--LMAAELWG--LGLGQPFTVSGLHGRGVADLLDEVLTILP 227 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 14/172 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +ALVG N GKS+L+N+ +G+ +V + TTR V ++ + Q F+DT GI Sbjct: 244 IALVGRPNVGKSSLLNQLIGSDRVLVDNVAGTTRDPVDELIELGDKQWRFVDTAGIRRRA 303 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + D Y L + + ++ A++ ++++ L ++ A+ ++L N Sbjct: 304 HQASGADFYAALRTQ---TALERAELALVLLEVQEPLSEQDVRIVTTAAEAGRAVVLAFN 360 Query: 139 KIDCVKPER--LLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTL 186 K D + ER LE+ EI L + +SA G D ++ + + L Sbjct: 361 KWDLLDDERRYYLER-EIERDLAHVAWAPRVNISAKTGRHADKLVPAMEAAL 411 >gi|261823804|ref|YP_003261910.1| tRNA modification GTPase TrmE [Pectobacterium wasabiae WPP163] gi|261607817|gb|ACX90303.1| tRNA modification GTPase TrmE [Pectobacterium wasabiae WPP163] Length = 454 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTAIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LILILNKID 141 D ++ I +W I+ AD V +VD + E R + + ++ NK D Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +E V +SA G G D + ++L ++ Sbjct: 339 VTGETLGIED-------VNTHSLIRLSARTGEGVDTLRDHLKQSM 376 >gi|210633108|ref|ZP_03297675.1| hypothetical protein COLSTE_01584 [Collinsella stercoris DSM 13279] gi|210159262|gb|EEA90233.1| hypothetical protein COLSTE_01584 [Collinsella stercoris DSM 13279] Length = 444 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKS+L N+ +G SIV++ TTR + +V + +DT GI Sbjct: 181 VAIIGRPNAGKSSLFNKMIGNDRSIVSNIAGTTRDAIDTVVERDGKRYRMVDTAGIRKKS 240 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + M+R I AD+ LVVD+ + + +R L+++LNK Sbjct: 241 TVYENIEYYSMVR-GLRAIDRADVALLVVDASTGVTEQDQKVANLAIERGCALVVLLNKW 299 Query: 141 DCVKPE 146 D +K + Sbjct: 300 DLLKDD 305 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 13/169 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 VA+VG N GKSTLVNR +IV TR + + +DT GI Sbjct: 6 VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFTLVDTGGIEPMK 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D + + + + + A ++ VVD + + + + K L++NK+D Sbjct: 66 SDDVFATSIRDQALAAAEEAAVILFVVDGSVGVTEEDESVARMVRKLKKPTFLLVNKLD- 124 Query: 143 VKPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVLNYLCSTLP 187 P R E N F + VSA GHG D+L+ + + LP Sbjct: 125 -NPAR-----ENDNLWEFYSLGVGDPVAVSALHGHGTGDLLDEVVALLP 167 >gi|123441422|ref|YP_001005409.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166225934|sp|A1JKS6|DER_YERE8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122088383|emb|CAL11174.1| putative GTP-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 494 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ E + + +DT G+ Sbjct: 209 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 269 KITEAVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 328 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 329 GMSEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCST 380 >gi|326331287|ref|ZP_08197579.1| ribosome-associated GTPase EngA [Nocardioidaceae bacterium Broad-1] gi|325950920|gb|EGD42968.1| ribosome-associated GTPase EngA [Nocardioidaceae bacterium Broad-1] Length = 461 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V +DT G Sbjct: 27 VVAVVGRPNVGKSTLVNRIIGRREAVVQDVPGVTRDRVSYDADWNGKAFTLVDTGGWDPD 86 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + AD V VVD+ + +++ + K ++L+ NK+D + Sbjct: 87 AQGLAERIAAQAEIAVSLADAVLFVVDATVGITDADEAVVRILRKSGKPVVLVANKVDDM 146 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E E + + N + + + + VSA G G D+L+ + + LP P Sbjct: 147 RTE--AEASALWN--LGLGEPWPVSALHGRGSGDMLDAILAVLPDPP 189 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 6/168 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +ALVG N GKS+L+N+ + ++V + TT V ++ + F+DT GI Sbjct: 203 IALVGKPNVGKSSLLNKLAKEERAVVDNVAGTTVDPVDELIELGGREWRFIDTAGIRKRV 262 Query: 83 AKDSYHKLMIRLSWST-IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L +T I A++ LV+D ++ +L+ + + L++ NK D Sbjct: 263 KESSGHEYYASLRTTTAIDRAEVAVLVIDGGEKISEQDIRILQTVREAGRALVIAFNKWD 322 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 V +R + EI +LV ++ ++A G D ++ L L Sbjct: 323 LVDEDRRWQLDREIERELVQVQWAPRINITARTGWHVDRLVPALDKAL 370 >gi|242255834|gb|ACS88901.1| GTPase [Helicobacter pylori] gi|242255836|gb|ACS88902.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I++ TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|209521121|ref|ZP_03269849.1| GTP-binding proten HflX [Burkholderia sp. H160] gi|209498431|gb|EDZ98558.1| GTP-binding proten HflX [Burkholderia sp. H160] Length = 395 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 20/173 (11%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVF 74 ++ +++ V+LVG TNAGKSTL N A+ T + R + + ++ Q+V Sbjct: 189 ARNRNQTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGDEAGQVVV 248 Query: 75 LDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAK 128 DT G ++ H+L+ R + HAD++ VVD+ ++++ ++++L I Sbjct: 249 SDTVGFI--RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNEVLHAIGA 306 Query: 129 RSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + R +L+ NKID V PE +E+ E N I + F+ SA G G D Sbjct: 307 DTIRQVLVFNKIDAV-PELAARGHAVERDEYGN----ISRVFL-SARTGQGLD 353 >gi|122702229|emb|CAL88305.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|150021216|ref|YP_001306570.1| tRNA modification GTPase TrmE [Thermosipho melanesiensis BI429] gi|205829182|sp|A6LMN4|MNME_THEM4 RecName: Full=tRNA modification GTPase mnmE gi|149793737|gb|ABR31185.1| tRNA modification GTPase TrmE [Thermosipho melanesiensis BI429] Length = 441 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + +VG N+GKSTL+NR + +IVT TTR +++G + + V +DT GI Sbjct: 213 VMTIVGKPNSGKSTLLNRLLLEDRAIVTDIPGTTRDVIKGEIEINGIRFVIVDTAGIRET 272 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS 111 KD K+ I S I+ AD++ V+D+ Sbjct: 273 KDVVEKIGIERSLKEIQKADVILFVLDA 300 >gi|300725383|ref|YP_003714722.1| GTPase [Xenorhabdus nematophila ATCC 19061] gi|297631939|emb|CBJ92664.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Xenorhabdus nematophila ATCC 19061] Length = 454 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DNVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VDS Sbjct: 261 IDGMPLHVIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDS 305 >gi|297156727|gb|ADI06439.1| ATP/GTP-binding protein [Streptomyces bingchenggensis BCW-1] Length = 502 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + DT G Sbjct: 279 SVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRH 338 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + R + + AD++ VVD SH E + ++++++ I+++NK Sbjct: 339 LPHHLVEAFRSTMEEVGDADLIVHVVDGSHPMPEEQLAAVREVIRDVGAVDVPEIVVINK 398 Query: 140 IDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLCSTLP 187 D P + +L+ +EK +VSA G G D++L + + LP Sbjct: 399 ADMADP-------LVLQRLLRVEKRALVVSARTGQGIDELLGLIDNELP 440 >gi|229815385|ref|ZP_04445720.1| hypothetical protein COLINT_02432 [Collinsella intestinalis DSM 13280] gi|229809165|gb|EEP44932.1| hypothetical protein COLINT_02432 [Collinsella intestinalis DSM 13280] Length = 445 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKS+L N+ +G SIV++ TTR + +V + +DT GI Sbjct: 182 VAIIGRPNAGKSSLFNKMIGNDRSIVSNIAGTTRDAIDTVVERDGKRYRMVDTAGIRKKS 241 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + M+R I AD+ LVVD+ + + +R L+++LNK Sbjct: 242 TVYENIEYYSMVR-GLRAIDRADVALLVVDASAGVTEQDQKVANLAIERGCALVVLLNKW 300 Query: 141 DCVKPE 146 D +K + Sbjct: 301 DLLKDD 306 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 9/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 VA+VG N GKSTLVNR +IV TR + + + +DT GI Sbjct: 6 VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFMLVDTGGIEPMK 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID- 141 + D + + + + + A ++ VVD + + + K L++NK+D Sbjct: 66 SDDVFATSIRDQALAAAEEAAVILFVVDGSVGATEEDESVARMVRKLKKPTFLLVNKLDN 125 Query: 142 -CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + L E + + VSA GHG D+L+ + S LP Sbjct: 126 PARENDSLWEFYSLG-----VGDPVAVSALHGHGTGDLLDEVVSLLP 167 >gi|317418209|emb|CBM95518.1| GTP-binding protein-like protein [Helicobacter cetorum] Length = 172 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 5/168 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I R + ES++ LDT G+ + Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINRRKIFLNESEVELLDTGGM-DK 67 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + + + +D++ VVD + L +EI K + L++NKID Sbjct: 68 NVVLSKEIKTFNLKAAQMSDLILYVVDGKSIPDDDDIKLFREIFKINPNCFLVINKIDN- 126 Query: 144 KPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +R E+A A+ V ++F +S + G + ++N + + L L P Sbjct: 127 --DREKERAYAFASFGVSSHRSFNISVSHNRGINTLINAILNELNLLP 172 >gi|262282851|ref|ZP_06060618.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA] gi|262261103|gb|EEY79802.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA] Length = 457 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI++ S+R++L LNK Sbjct: 281 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLL-EISQDSNRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|256027086|ref|ZP_05440920.1| GTP-binding protein [Fusobacterium sp. D11] gi|289765066|ref|ZP_06524444.1| GTP-binding protein [Fusobacterium sp. D11] gi|289716621|gb|EFD80633.1| GTP-binding protein [Fusobacterium sp. D11] Length = 440 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 10/145 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +G++ F E +D ++ +A++G NAGKS+LVN+ G + +IV+ TTR + Sbjct: 164 IGKMDFPEEEEDVLK-------LAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAID 216 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ K+++ + +DT GI ++S + + IK AD+ L++D+ L Sbjct: 217 TLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQD 276 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + A+ +I+++NK D V+ Sbjct: 277 KRIAGIAAEELKPIIIVMNKWDLVE 301 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG K++IV TR + S+ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L +EIA K++ +IL + Sbjct: 65 NDF--LMAKIKEQAEVAMNEADVILFVVDG----KSGLNPLDEEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|197286945|ref|YP_002152817.1| tRNA modification GTPase TrmE [Proteus mirabilis HI4320] gi|254811490|sp|B4F0U0|MNME_PROMH RecName: Full=tRNA modification GTPase mnmE gi|194684432|emb|CAR46143.1| probable tRNA modification GTPase [Proteus mirabilis HI4320] Length = 454 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DDVRTQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VDS Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDS 305 >gi|169334783|ref|ZP_02861976.1| hypothetical protein ANASTE_01189 [Anaerofustis stercorihominis DSM 17244] gi|169257521|gb|EDS71487.1| hypothetical protein ANASTE_01189 [Anaerofustis stercorihominis DSM 17244] Length = 439 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 12/145 (8%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F E+K V++ R+ +A+VG NAGKS+LVN +G IV++ TTR + I + + Sbjct: 164 FPENKKGVEEEERT-KIAVVGKPNAGKSSLVNTLLGENRVIVSNISGTTRDAIDTIFNYE 222 Query: 69 ESQIVFLDTPGIFNAKDSY----HKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHD 121 +DT GI Y H IR + I+ ADI L++D+ + V I Sbjct: 223 GKNYTLIDTAGIRRKAKIYDDIEHYSTIR-AIGAIERADICLLMIDAMEGVTDQDVKIAG 281 Query: 122 LLKEIAKRSSRLILILNKIDCVKPE 146 L+K+ R +I+++NK D V+ E Sbjct: 282 LIKD---RYKAVIIVINKWDLVEKE 303 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 7/169 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R VAL+G N GKSTL N+ G ++SIV TR + S + +DT GI Sbjct: 2 REPFVALIGRPNTGKSTLFNKISGKRISIVEDTPGVTRDRIITDTSWSGNSFFLIDTGGI 61 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + D K M R + I AD++ LVVD + + ++ I K +L +NK Sbjct: 62 EPKSDDVILKQMKRQANLAIDMADVIVLVVDGRAGVTASDREVATMIRKSGKPCVLAVNK 121 Query: 140 IDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ID + L E ++A + + +SA G D+L+ + P Sbjct: 122 IDSFDIDYLRYEFYDLA-----LGEPIGISAEHALGFGDLLDEVVKHFP 165 >gi|89068178|ref|ZP_01155588.1| GTP-binding protein HflX [Oceanicola granulosus HTCC2516] gi|89046095|gb|EAR52153.1| GTP-binding protein HflX [Oceanicola granulosus HTCC2516] Length = 430 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + +++ DT G + Sbjct: 211 IVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRKVELPSGQEVILSDTVGFISD 270 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA-KRSSRLILILN 138 + R + + AD++ V D +H E + D +L I + L+ + N Sbjct: 271 LPTELVAAFRATLEEVLDADLILHVRDVAHAETEEQAEDVRTILSGIGVGEDAPLLEVWN 330 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 KID + PE E+ A + + F VSA +G G D +L + + Sbjct: 331 KIDLLPPE---EREGRATQAARRDDVFAVSALEGIGLDPLLAAVSA 373 >gi|288930105|ref|ZP_06423943.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 317 str. F0108] gi|288328578|gb|EFC67171.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 317 str. F0108] Length = 437 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 13/170 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKCDWAGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILI 136 N+ D + + R + AD+V +VD + + DL +++A+ R ++L+ Sbjct: 62 VNSDDIFEDAIRRQVLVATEEADLVLFLVD----VNTGVTDLDEDVAQILRRTKVPVVLV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +NK D E++ E + + + F +SA G G D+L+ + + L Sbjct: 118 VNKAD--NNEQIYEAPAFYS--LGLGDPFPISAATGSGTGDLLDAVIAQL 163 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS++VN F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S I+H+D+ L++D+ R ++ ++ + I K L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRAIEHSDVCILMIDATRGIESQDMNIFQLIQKNQKSLVVVVNKWDL 298 Query: 143 V 143 V Sbjct: 299 V 299 >gi|122701637|emb|CAL88208.1| GTPase [Helicobacter pylori] gi|122701643|emb|CAL88211.1| GTPase [Helicobacter pylori] gi|122701645|emb|CAL88212.1| GTPase [Helicobacter pylori] gi|122701659|emb|CAL88219.1| GTPase [Helicobacter pylori] gi|122701661|emb|CAL88220.1| GTPase [Helicobacter pylori] gi|122701663|emb|CAL88221.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFSISVSHNRGISALIDAILSALNLNP 170 >gi|332162632|ref|YP_004299209.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606735|emb|CBY28233.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. palearctica Y11] gi|325666862|gb|ADZ43506.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859281|emb|CBX69631.1| GTP-binding protein engA [Yersinia enterocolitica W22703] Length = 494 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ E + + +DT G+ Sbjct: 209 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 269 KITEAVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 328 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 329 GMSEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCST 380 >gi|288819136|ref|YP_003433484.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6] gi|288788536|dbj|BAI70283.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6] gi|308752720|gb|ADO46203.1| tRNA modification GTPase TrmE [Hydrogenobacter thermophilus TK-6] Length = 450 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +A+VG N GKS+L N +G + +IVT TTR + + + I +DT G Sbjct: 216 RKGINLAIVGKPNVGKSSLFNALLGRERAIVTEVPGTTRDFLSEELHMEGVPINLIDTAG 275 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D + ++ S +I AD+V VVD+ + L+ + D+ + +R I +LNK Sbjct: 276 IRETEDVVESIGVKRSIDSINSADMVLFVVDASKPLEKDDWDVYNLVKQRDH--IKVLNK 333 Query: 140 IDC 142 +D Sbjct: 334 VDL 336 >gi|222528757|ref|YP_002572639.1| GTP-binding protein EngA [Caldicellulosiruptor bescii DSM 6725] gi|222455604|gb|ACM59866.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725] Length = 440 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 15/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL NR +G + +IV TR + G + +DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPY 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILN 138 ++D K M R + I +D++ +VD K + D +E+A R+S+ ++L +N Sbjct: 64 SEDIILKQMRRQAQFAIDMSDVIIFMVDG----KTGLTDADREVANMLRTSKKPIVLAVN 119 Query: 139 KIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID + + ++ E E+ + +SA G G DVL+ + + L Sbjct: 120 KIDNISQQAMIYEFYELG-----LSDPIAMSAEHGTGVGDVLDAVVNYL 163 Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 10/157 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+LVN +G + IV+ TTR + + I +DT G+ Sbjct: 178 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEGIPITLIDTAGLRRKS 237 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + M+R + I+ +DI +++D + + + I+ +NK Sbjct: 238 KIYDNVERYSMLR-TLQAIERSDICIILLDGTENVSEQDAKVAGYAYEAGKGCIVAVNKW 296 Query: 141 DCV-KPERLLEQ--AEIANKLVFIE--KTFMVSATKG 172 D V K E+ ++ +I KL F++ +SA G Sbjct: 297 DAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTG 333 >gi|122702597|emb|CAL88488.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + I K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILSVLDLNP 170 >gi|116496320|ref|YP_808054.1| tRNA modification GTPase TrmE [Lactobacillus casei ATCC 334] gi|191639864|ref|YP_001989030.1| tRNA modification GTPase TrmE [Lactobacillus casei BL23] gi|227533513|ref|ZP_03963562.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630797|ref|ZP_04673828.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067924|ref|YP_003789947.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang] gi|122262283|sp|Q033L0|MNME_LACC3 RecName: Full=tRNA modification GTPase mnmE gi|116106470|gb|ABJ71612.1| tRNA modification GTPase trmE [Lactobacillus casei ATCC 334] gi|190714166|emb|CAQ68172.1| tRNA modification GTPase trmE [Lactobacillus casei BL23] gi|227188842|gb|EEI68909.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527080|gb|EEQ66081.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440331|gb|ADK20097.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang] gi|327383978|gb|AEA55454.1| TRNA modification GTPase TrmE:Small GTP-binding protein [Lactobacillus casei LC2W] gi|327387162|gb|AEA58636.1| TRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Lactobacillus casei BD-II] Length = 462 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATAIVGRPNVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S I AD++ LV+D L L++ A + + I++LNK Sbjct: 282 IHDTTDKVEKIGVERSRQAITQADLILLVLDQSEPLTDEDEQLIQATANK--KRIIVLNK 339 Query: 140 ID 141 D Sbjct: 340 QD 341 >gi|291529193|emb|CBK94779.1| tRNA modification GTPase trmE [Eubacterium rectale M104/1] Length = 458 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 9/153 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG+ +IVT TTR ++ ++ + +DT GI + +D Sbjct: 226 IIGKPNAGKSSLLNVLVGSDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDV 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ ++ + AD++ VVDS N +D++ I + + +++LNK D Sbjct: 286 VEKIGVKKAMEHANEADLIIYVVDSSVVFDDNDYDIINFI--KDKKAVILLNKSDLASK- 342 Query: 147 RLLEQAEIANKLVFIEKTFM-VSATKGHGCDDV 178 A+ KLV +KT + VSA + G D++ Sbjct: 343 ---VSADDIKKLV--DKTVISVSAKESSGIDEL 370 >gi|229014650|ref|ZP_04171764.1| tRNA modification GTPase mnmE [Bacillus mycoides DSM 2048] gi|228746661|gb|EEL96550.1| tRNA modification GTPase mnmE [Bacillus mycoides DSM 2048] Length = 458 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 7/143 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGISTAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL + A + I+I+NK Sbjct: 278 IRETEDIVERIGVERSKEMMSQADLVLIVVNYSEALTNEDEDLFR--AVQGKDFIVIVNK 335 Query: 140 IDC---VKPERLLEQAEIANKLV 159 D + ER+ + A + N+++ Sbjct: 336 TDLPQGIDMERVTDLA-VGNRVI 357 >gi|86605901|ref|YP_474664.1| GTP-binding protein EngA [Synechococcus sp. JA-3-3Ab] gi|123506716|sp|Q2JV46|DER_SYNJA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86554443|gb|ABC99401.1| GTP-binding protein EngA [Synechococcus sp. JA-3-3Ab] Length = 459 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+L+NR VG++ +IV+ TTR V +V + +DT GI Sbjct: 180 AVAIVGRPNVGKSSLLNRLVGSERAIVSPIAGTTRDAVDTLVEWEGQSYRLIDTAGIRRK 239 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + I ++ I+ +D+V LV+D+ + L I + I+++NK Sbjct: 240 SRVEYGVEFFSINRAFKAIQRSDVVLLVIDALEGVTEQDQRLAGRIEEEGRACIIVVNKW 299 Query: 141 DCV--KPERLLEQ--AEIANKLVFIE--KTFMVSATKGH 173 D V K + + EI +L FI+ VSA G Sbjct: 300 DAVENKDTHTINEYTREIRERLYFIDWAPLLFVSALTGQ 338 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+LVNR G + +IV + TR + V ++ +DT G+ Sbjct: 6 VAVVGRPNVGKSSLVNRLAGVRSAIVHDEPGITRDRLYQEVEWNGRRLRVVDTGGLVFGD 65 Query: 85 DSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 DS IR + + A V VVD L +L + ++ +++ +NK C Sbjct: 66 DSEFLPHIRQQAMAAMAEAHAVIFVVDGREGLTPADKELADWLRRQPLPVVVAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L QA +L E SA G+G ++L + LP Sbjct: 124 SGQLGLAQAAAFWELGLGE-PIPCSAVHGNGVAELLEAVLPHLP 166 >gi|148266438|ref|YP_001233144.1| tRNA modification GTPase TrmE [Geobacter uraniireducens Rf4] gi|205829152|sp|A5G9V3|MNME_GEOUR RecName: Full=tRNA modification GTPase mnmE gi|146399938|gb|ABQ28571.1| tRNA modification GTPase trmE [Geobacter uraniireducens Rf4] Length = 455 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 8/137 (5%) Query: 9 FNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FNE K R G V + G N GKS+L+N + K +IVT TTR ++ +V+ Sbjct: 211 FNEGKVL-----RDGVSVVIAGKPNVGKSSLLNTLLREKRAIVTSVPGTTRDLIEEVVTI 265 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 K + LDT GI + D + I+LS I AD+V ++DS +L +A Sbjct: 266 KGLPVKLLDTAGIRESDDRVEREGIKLSLDKIPSADLVLFIIDSSLPFSSEDQAILDVLA 325 Query: 128 KRSSRLILILNKIDCVK 144 I+++NK D + Sbjct: 326 P--CNFIVVMNKSDICR 340 >gi|254225543|ref|ZP_04919152.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51] gi|125621863|gb|EAZ50188.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51] Length = 449 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 214 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 273 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 274 DTVEKIGIERAWEEIRQADRVLFMVDG 300 >gi|295095342|emb|CBK84432.1| tRNA modification GTPase trmE [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 454 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 10/140 (7%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE- 125 + +DT G+ +A D ++ I +W I+ AD V +VD V+ ++ + Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPDF 320 Query: 126 IAKRSSRL--ILILNKIDCV 143 IA+ ++L ++ NK D Sbjct: 321 IARLPAKLPITVVRNKADVT 340 >gi|269962685|ref|ZP_06177030.1| tRNA modification GTPase [Vibrio harveyi 1DA3] gi|269832608|gb|EEZ86722.1| tRNA modification GTPase [Vibrio harveyi 1DA3] Length = 453 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + D+ + R S + +I NK D Sbjct: 278 DEVEKIGIERAWDEIAQADRVLFMVDGTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKAD 337 >gi|258647985|ref|ZP_05735454.1| ribosome-associated GTPase EngA [Prevotella tannerae ATCC 51259] gi|260851826|gb|EEX71695.1| ribosome-associated GTPase EngA [Prevotella tannerae ATCC 51259] Length = 437 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS+L+N F+G + +IVT TTR + + +DT GI Sbjct: 179 AIVGRPNAGKSSLINAFIGEERNIVTDIAGTTRDSILTRYDKFGFDFYLVDTAGIRKKGK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N ++ +M S I+H+D+ L++D+ R ++ ++ K I K + L++ +NK Sbjct: 239 VNEDLEFYSVM--RSIRAIEHSDVCILLIDATRGIESQDMNIFKVIQKNNKSLVVAINKW 296 Query: 141 D 141 D Sbjct: 297 D 297 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 21/171 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR G + +IV+ + TTR G +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVSEEAGTTRDRQYGKCEWGGQIFSIVDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILIL---- 137 D + + + + AD++ +VD+ + I DL +++A R + + +IL Sbjct: 65 DDIFEGEIRKQVLVATEEADLILFLVDN----QTGITDLDEDVAMILRQANIPVILCANK 120 Query: 138 --NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 N ID KL E + SA G G D+L+ + L Sbjct: 121 IENNIDRYNASEFY-------KLGLGEPNCL-SAITGSGTGDLLDTIIERL 163 >gi|242255878|gb|ACS88923.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G + +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGINALIDAILSTLNL 168 >gi|122702233|emb|CAL88307.1| GTPase [Helicobacter pylori] gi|122702601|emb|CAL88490.1| GTPase [Helicobacter pylori] gi|122702603|emb|CAL88491.1| GTPase [Helicobacter pylori] gi|122702609|emb|CAL88494.1| GTPase [Helicobacter pylori] gi|122702671|emb|CAL88525.1| GTPase [Helicobacter pylori] gi|122702673|emb|CAL88526.1| GTPase [Helicobacter pylori] gi|122702847|emb|CAL88613.1| GTPase [Helicobacter pylori] gi|122702863|emb|CAL88621.1| GTPase [Helicobacter pylori] gi|122702885|emb|CAL88632.1| GTPase [Helicobacter pylori] gi|242255866|gb|ACS88917.1| GTPase [Helicobacter pylori] gi|242255868|gb|ACS88918.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|37197696|dbj|BAC93534.1| predicted GTP-binding protein [Vibrio vulnificus YJ016] Length = 511 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 4/152 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR ++ ++V TR G E + +DT GI + Sbjct: 19 VVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGS 78 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V +VD L + + + K +L++NK+D + Sbjct: 79 EEGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNKVDGI 138 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 + A + +++ + ++A G G Sbjct: 139 DA----DAASADFWQLGVDEMYQIAAAHGRGV 166 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 225 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRG 284 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 285 KVHETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 344 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + + E+ +L F++ + +SA G G Sbjct: 345 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGV 381 >gi|15921784|ref|NP_377453.1| GTP-binding protein [Sulfolobus tokodaii str. 7] gi|15622571|dbj|BAB66562.1| 334aa long hypothetical GTP-binding protein [Sulfolobus tokodaii str. 7] Length = 334 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G N GKSTLV++ AK + ++ TT+ I G + +I +DTPGI + Sbjct: 158 TIIIAGPPNVGKSTLVSKISSAKPEVASYPF-TTKEIHVGHIDTGIVKIQVIDTPGILDR 216 Query: 84 KDSYHKLMIRLSWSTIKHADIVCL----VVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 S + + + IK+ + + L V +S DL KE+ S +I +LNK Sbjct: 217 PMSERNSIELKAINAIKNLNGIILFLFDVSNSSIYSAKEQLDLYKEVKSIKSVVIPVLNK 276 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ID K E L +Q K +EK F +SA K G D +LNY+ + L Sbjct: 277 IDD-KNEELYKQI----KENILEKVFEISAEKNIGLDTLLNYVINLL 318 >gi|330504675|ref|YP_004381544.1| GTP-binding protein EngA [Pseudomonas mendocina NK-01] gi|328918961|gb|AEB59792.1| GTP-binding protein EngA [Pseudomonas mendocina NK-01] Length = 492 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDAIVGDLSGLTRDRQYGEAKWQGRTYIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD V +VD+ + + + + + +R+ + L++NK+D + Sbjct: 64 EEGIDAKMAEQSLQAIEEADAVLFLVDARAGMTASDQMIGEHLRRRNKQSFLVVNKVDNL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + + ++ G G +L + P Sbjct: 124 DVD--LARAEFSP--MGLGEPLAIAGAHGRGITQMLEVVLGAFP 163 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + IV + TTR + + + +DT G+ Sbjct: 199 LAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDDEKYTLIDTAGVRRRG 258 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNK 139 ++ K + + I+ +++V V+D+ RE V+ HD LL + + L++ LNK Sbjct: 259 KIFEAVEKFSVVKTLQAIQDSNVVVFVMDA-REGVVD-HDLNLLGFVLESGRALVIALNK 316 Query: 140 IDCV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + + ++ + E+ +L F++ +SA G G Sbjct: 317 WDGMDQGQKDYVKTELERRLFFVDFADIHFISALHGTGV 355 >gi|327462002|gb|EGF08331.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1057] Length = 436 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + S + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|239503914|ref|ZP_04663224.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB900] Length = 451 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 203 VQTSARQGKLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 263 GLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 322 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 323 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 373 Query: 186 LPLAP 190 P Sbjct: 374 AGFHP 378 >gi|189467536|ref|ZP_03016321.1| hypothetical protein BACINT_03926 [Bacteroides intestinalis DSM 17393] gi|189435800|gb|EDV04785.1| hypothetical protein BACINT_03926 [Bacteroides intestinalis DSM 17393] Length = 466 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 4/176 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ + F+DT GI Sbjct: 225 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTTNIGGITFRFIDTAGIRETN 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILNKIDC 142 D+ L I ++ ++ A+IV ++D+ + ++ L +I R R LIL+ NK D Sbjct: 285 DTIESLGIERTFQKLEQAEIVLWMIDA-TDATSQMNQLSGQILPRLERKHLILVFNKSDL 343 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 E A+ ++ + +SA K D + L + L P + D I Sbjct: 344 SGTAHSDEVLSAASSIIPDAECIFISAKKRQNTDVLQKKLIAAANL-PTITQNDVI 398 >gi|15828559|ref|NP_325919.1| GTP-binding protein EngA [Mycoplasma pulmonis UAB CTIP] gi|26006733|sp|Q98RC1|DER_MYCPU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|14089501|emb|CAC13261.1| GTP-BINDING PROTEIN [Mycoplasma pulmonis] Length = 435 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 15/184 (8%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +++ VA+VG N GKSTL NR VG +VSIV + TR + ++ +DT G Sbjct: 5 TKNNLVAIVGKPNVGKSTLFNRLVGKRVSIVYDQPGVTRDRIYENINWSGKNFRIIDTGG 64 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILIL- 137 I + + + + + I+ ++I+ V+D E+ + DL + I + S + +L+L Sbjct: 65 IVVSDQPFVEQIRIQAQIAIEESEIILFVIDGSEEITSD--DLYIASILRNSKKKVLVLA 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK+D K E + + + E + +S+ G G +VL+ + + + + DQ Sbjct: 123 NKLDNNKNE------DYSIYSLGFEDYYKISSVHGEGIGEVLDKVINLMN-----FENDQ 171 Query: 198 ISDL 201 DL Sbjct: 172 DEDL 175 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 66/127 (51%), Gaps = 7/127 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKS+L+N + SIV+ TTR ++ + ++ + +DT GI N K Sbjct: 178 IAILGKPNAGKSSLLNALTKQERSIVSEIAGTTRDSIKSTIEIEDQKFFIIDTAGI-NRK 236 Query: 85 DSY-----HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 H ++R + ++ +D+ +++D+ EL ++ + + I+++NK Sbjct: 237 SKLVESVDHYALMR-AMGSLDESDLSIIIIDATEELSHFNARIIGYASDKKKPTIIVINK 295 Query: 140 IDCVKPE 146 D +K E Sbjct: 296 WDLIKKE 302 >gi|308182994|ref|YP_003927121.1| GTP-binding protein EngA [Helicobacter pylori PeCan4] gi|308065179|gb|ADO07071.1| GTP-binding protein EngA [Helicobacter pylori PeCan4] Length = 460 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +S + G ++N + S L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALINAILSALDL 169 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 201 VGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHRG 260 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 261 KILGIEKYALDRTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 319 >gi|303256375|ref|ZP_07342389.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47] gi|331001498|ref|ZP_08325116.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT 11859] gi|302859866|gb|EFL82943.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47] gi|329568227|gb|EGG50044.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT 11859] Length = 463 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 22/161 (13%) Query: 5 EITFFNEHK------------DFVQDNSRSG-------CVALVGATNAGKSTLVNRFVGA 45 EI F +E++ + V D++R G VALVG TN GKS+L+N G Sbjct: 188 EIDFLSEYQSQEKLEDIQNRLESVLDSARQGEILRDGLRVALVGETNVGKSSLLNYLAGE 247 Query: 46 KVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV 105 +++IV+ TTR ++ + F+DT GI +D ++ I + I AD++ Sbjct: 248 EIAIVSDIAGTTRDKIQTDLIISGVPFHFVDTAGIRETEDRIEQIGIERTKQEISKADVI 307 Query: 106 CL---VVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + D + K ++ LK I + +I +LNK+D + Sbjct: 308 LEIRDIRDQQNKNKDSMQTALKMIKGKDVPIITVLNKVDLI 348 >gi|242255858|gb|ACS88913.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ++ A + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISTLIDAILSALNLNP 170 >gi|242255842|gb|ACS88905.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|206891018|ref|YP_002249510.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742956|gb|ACI22013.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 423 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 11/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL G TNAGKS+L+N G ++IV+ TT + + + +V +DT GI + Sbjct: 11 IALFGRTNAGKSSLINALTGQSLAIVSDVPGTTTDPVAKAMEILPLGPVVLIDTAGIDDV 70 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L + S+ + D+V LV+D + D++K+ + + LI ++NKID + Sbjct: 71 -GKLGELRKKKSYEVLDKTDLVLLVIDPEKGFGEFERDIVKKAEETGTPLIYVVNKID-I 128 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE A K E VSA G ++ + + P Sbjct: 129 HPE--------AKKYELPEPKVFVSALTAEGIVELKQTIVNNAP 164 >gi|90194140|gb|ABD92631.1| ThdF [Pasteurella canis] Length = 436 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + A D ++ I +WS I+ AD + L++DS Sbjct: 263 LREATDEVERIGIVRAWSEIEQADRILLMLDS 294 >gi|90194138|gb|ABD92630.1| ThdF [Pasteurella multocida subsp. septica] Length = 433 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ ++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 190 DHVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 249 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +WS I+ AD + L++DS Sbjct: 250 IDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDS 294 >gi|150019907|ref|YP_001312161.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052] gi|189036196|sp|A6M3M5|MNME_CLOB8 RecName: Full=tRNA modification GTPase mnmE gi|149906372|gb|ABR37205.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052] Length = 462 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + +VG N GKS+L+N + +IVT TTR I+ ++ + DT G Sbjct: 225 RDGLNIVIVGKPNVGKSSLLNALLRENRAIVTDVPGTTRDIIEEYINLDGIPVKITDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I+ AD++ L++D+ R + ++ +I R + I++LNK Sbjct: 285 IRDTEDVVEKIGVEKSKEKIEEADLIILMLDASRYIDEEDSRIINKIKNR--KYIVLLNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D +K ++ Q EI L I +SA G G D Sbjct: 343 MD-LKDIKI--QEEILKNLSNI---INISAKTGQGID 373 >gi|325696369|gb|EGD38260.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK160] Length = 436 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + S + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|190171196|gb|ACE63668.1| ThdF [Enterobacter helveticus] gi|190171198|gb|ACE63669.1| ThdF [Enterobacter helveticus] gi|190171200|gb|ACE63670.1| ThdF [Enterobacter helveticus] gi|190171202|gb|ACE63671.1| ThdF [Enterobacter helveticus] gi|190171204|gb|ACE63672.1| ThdF [Enterobacter helveticus] gi|190171206|gb|ACE63673.1| ThdF [Enterobacter helveticus] gi|190171208|gb|ACE63674.1| ThdF [Enterobacter helveticus] gi|190171210|gb|ACE63675.1| ThdF [Enterobacter helveticus] gi|190171212|gb|ACE63676.1| ThdF [Enterobacter helveticus] gi|190171216|gb|ACE63678.1| ThdF [Enterobacter helveticus] Length = 439 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 19/184 (10%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ A D ++ I +W I+ AD V +VD V+ + + Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQIWPDF 312 Query: 127 AKRSSR---LILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + + ++ NK D +P L E V +SA G G + + ++L Sbjct: 313 MARLPQNLPITVVRNKADVTGEPAGLSE--------VNGHSLIRLSARSGEGVEVLRDHL 364 Query: 183 CSTL 186 S++ Sbjct: 365 KSSM 368 >gi|122702619|emb|CAL88499.1| GTPase [Helicobacter pylori] gi|122702667|emb|CAL88523.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLDLNP 170 >gi|328946229|gb|EGG40373.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1087] Length = 479 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 243 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 302 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI++ S+R++L LNK Sbjct: 303 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISQDSNRIVL-LNK 360 Query: 140 IDC 142 D Sbjct: 361 TDL 363 >gi|213028788|ref|ZP_03343235.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 365 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 80 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 139 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 140 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 199 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 200 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 240 >gi|238758839|ref|ZP_04620012.1| GTP-binding protein engA [Yersinia aldovae ATCC 35236] gi|238702947|gb|EEP95491.1| GTP-binding protein engA [Yersinia aldovae ATCC 35236] Length = 494 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ E + + +DT G+ Sbjct: 209 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 269 KITETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 328 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 329 GMTEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCST 380 >gi|228911324|ref|ZP_04075128.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 200] gi|228848342|gb|EEM93192.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 200] Length = 458 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 8/177 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL I + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFHAIQGKD--FIVIVNK 335 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D P+ + E KL + S + G D+ L + L + SAD Sbjct: 336 TDL--PQAI--DMERVTKLAAGNRVITTSLIEEQGIDE-LEKAIADLFFEGTIDSAD 387 >gi|190571288|ref|YP_001975646.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018685|ref|ZP_03334493.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357560|emb|CAQ54999.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995636|gb|EEB56276.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 441 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 26/214 (12%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 G I +E + + S +A++G N GKST +N + IV+ + TTR V Sbjct: 157 GVIEGLSEGTELPESESIRLRIAIIGRPNVGKSTFLNSLLAENRLIVSSEPGTTRDSVDI 216 Query: 64 IVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 I +DT GI N D+ + S +IK + +V L++DS L + Sbjct: 217 SYDHNGKLITLIDTAGIRRKANVVDNLESRFVEKSIESIKRSHVVILMLDSL--LGIEQQ 274 Query: 121 DL-LKEIAKRSSR-LILILNKIDCVKPE------RLLEQAEIANKLVFIE-KTFMVSATK 171 DL + E A + + +I++LNK D + + + ++Q E+ +F+E T +SA K Sbjct: 275 DLSIAEAAIKGGKGIIIVLNKWDLIGKDDRSKLIKFVKQQEVTR--LFLEVPTVTISALK 332 Query: 172 GHGCDDV----------LNYLCSTLPLAPWVYSA 195 G C DV LN ST L W+ A Sbjct: 333 GMRCGDVIDKCLEVSESLNKKISTAKLNNWLIDA 366 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + ++G NAGKSTL NR VG K ++V+ TR GI + + +DT G +N + Sbjct: 4 IVIIGLPNAGKSTLFNRLVGRKAAVVSDIPGVTRDRREGIGRISDLEFKVIDTGG-WNDQ 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 S+ +I ++ AD+V +VD+ + + N + K + +++++ +ILI NK + Sbjct: 63 TSFSLQVIEQIEFSLSSADVVFFLVDAKVQNEQN-KEFAKWLKRKTNKPVILIANKCESH 121 Query: 144 KPERL 148 K E + Sbjct: 122 KSENV 126 >gi|182412706|ref|YP_001817772.1| tRNA modification GTPase TrmE [Opitutus terrae PB90-1] gi|205415785|sp|B1ZWP5|MNME_OPITP RecName: Full=tRNA modification GTPase mnmE gi|177839920|gb|ACB74172.1| tRNA modification GTPase TrmE [Opitutus terrae PB90-1] Length = 452 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VGA N GKS+L+NR VG + ++V+ + TTR + ++ E I +DT G+ + Sbjct: 221 IVGAPNVGKSSLLNRLVGRERALVSAEPGTTRDFIEERIAVGEHCIRLVDTAGLNVSPAP 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDCVK 144 L I S + AD+V +VD L L E+AKR +L+ NKID Sbjct: 281 LEALGIHKSLEQLADADLVLAIVD----LSDPEPSLPPELAKRLDPKNTLLVANKIDLCA 336 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + +L+ + +VF SA G G DD+ + Sbjct: 337 GKCVLDTVDQWFGMVF------CSAKIGVGLDDLFGAI 368 >gi|218900625|ref|YP_002449036.1| tRNA modification GTPase TrmE [Bacillus cereus G9842] gi|228905428|ref|ZP_04069383.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 4222] gi|228968636|ref|ZP_04129619.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar sotto str. T04001] gi|218540589|gb|ACK92983.1| tRNA modification GTPase TrmE [Bacillus cereus G9842] gi|228791065|gb|EEM38683.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar sotto str. T04001] gi|228854248|gb|EEM98951.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 4222] Length = 458 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEDLFH--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER+ E A Sbjct: 336 TDLPQAIDMERVTELA 351 >gi|160932434|ref|ZP_02079824.1| hypothetical protein CLOLEP_01269 [Clostridium leptum DSM 753] gi|156868393|gb|EDO61765.1| hypothetical protein CLOLEP_01269 [Clostridium leptum DSM 753] Length = 464 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 11/167 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G N GKSTL+N G + SIVT TTR +V V + + DT GI + +D Sbjct: 234 IAGRPNVGKSTLMNLLSGCERSIVTELPGTTRDVVEETVLVGDVTLRLSDTAGIRSTEDL 293 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ + + I+ AD+V V D+ +EL + +LL + S I ++NK D + Sbjct: 294 VEQIGVNRAKDRIQTADLVLAVFDASQELNEDDRNLLDSLQGVPS--IAVINKTDL---D 348 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDV---LNYLCSTLPLAP 190 ++ I NK+ I F+V A++G G +D+ L L T L P Sbjct: 349 AKIDVKYIKNKVKQI--VFLV-ASEGKGLEDLQQALAELAGTSELEP 392 >gi|281425284|ref|ZP_06256197.1| hypothetical protein HMPREF0971_02256 [Prevotella oris F0302] gi|299141484|ref|ZP_07034620.1| ribosome-associated GTPase EngA [Prevotella oris C735] gi|281400577|gb|EFB31408.1| ribosome-associated GTPase EngA [Prevotella oris F0302] gi|298576820|gb|EFI48690.1| ribosome-associated GTPase EngA [Prevotella oris C735] Length = 437 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 13/171 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR ++ +IV+ TTR G S + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNAKEFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRL--ILI 136 + D + + R + AD+V +VD + + D +++A R ++L IL+ Sbjct: 62 VKSDDIFEDAIRRQVLVATEEADLVLFLVD----VTTGVTDWDEDVATILRRAKLPVILV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D E AE + I + +SA G G D+L+ + LP Sbjct: 118 ANKVD--NSSEYYEAAEFYK--LGIGEPQCISAATGGGTGDLLDMIVDKLP 164 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 7/140 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S I+++D+ L++D+ R ++ ++ + I K + L++++NK D Sbjct: 239 VSEDLEFYSVMRSIRAIENSDVCILMLDATRGVEAQDMNIFQLIQKNNKSLVVVVNKWDL 298 Query: 143 V--KPERLLE--QAEIANKL 158 V K +++++ +A I N++ Sbjct: 299 VEEKSQKVIDTFEAAIRNRM 318 >gi|227354815|ref|ZP_03839232.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906] gi|227165133|gb|EEI49964.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906] Length = 454 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DDVRAQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VDS Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDS 305 >gi|190171180|gb|ACE63660.1| ThdF [Enterobacter aerogenes] Length = 439 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ +A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|126736284|ref|ZP_01752026.1| GTP-binding protein HflX [Roseobacter sp. CCS2] gi|126714105|gb|EBA10974.1| GTP-binding protein HflX [Roseobacter sp. CCS2] Length = 412 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 30/201 (14%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R IV +++ DT G + Sbjct: 193 IVALVGYTNAGKSTLFNRLTGAQVFAKDMLFATLDPTMRKIVLPTGDEVIMSDTVGFISD 252 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIA-KRSSRLILILN 138 + R + + AD++ V D SH E ++H +L+ + + +I + N Sbjct: 253 LPTELVAAFRATLEEVLDADLIVHVRDISHPQTEEQAEDVHAILQSLGVAEEAPIIEVWN 312 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS----------- 184 K D ++ + +L QA + L F VSA G G D +L + Sbjct: 313 KTDLLEGDARDAVLTQAARTDDL------FAVSAITGEGMDPLLAAIPDKLKDPRSEEHL 366 Query: 185 TLPLA-----PWVYSADQISD 200 +LP A W++ A ++D Sbjct: 367 SLPFADGKKRAWLFEAGVVTD 387 >gi|238785325|ref|ZP_04629314.1| GTP-binding protein engA [Yersinia bercovieri ATCC 43970] gi|238713778|gb|EEQ05801.1| GTP-binding protein engA [Yersinia bercovieri ATCC 43970] Length = 494 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ E + V +DT G+ Sbjct: 209 LAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYVLIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 269 KVTETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 328 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 329 GMTEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCST 380 >gi|300118814|ref|ZP_07056534.1| tRNA modification GTPase TrmE [Bacillus cereus SJ1] gi|298723782|gb|EFI64504.1| tRNA modification GTPase TrmE [Bacillus cereus SJ1] Length = 458 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L +L + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSETLTNEDEELFR--AVQGKDFIVIVNK 335 Query: 140 ID---CVKPERLLEQA 152 D + ER++E A Sbjct: 336 TDLPQSIDMERVIELA 351 >gi|323516075|gb|ADX90456.1| tRNA modification GTPase TrmE [Acinetobacter baumannii TCDC-AB0715] Length = 451 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 203 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 263 GLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 322 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 323 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 373 Query: 186 LPLAP 190 P Sbjct: 374 AGFHP 378 >gi|322506199|gb|ADX01653.1| TrmE [Acinetobacter baumannii 1656-2] Length = 451 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 203 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 263 GLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 322 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 323 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 373 Query: 186 LPLAP 190 P Sbjct: 374 AGFHP 378 >gi|332995875|gb|AEF05930.1| tRNA modification GTPase [Alteromonas sp. SN2] Length = 462 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 13/193 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ H V++ ++ G V + G NAGKS+L+N G +IVT T Sbjct: 195 GDLAAILAHLQVVREQAKQGSLLREGMQVVIAGRPNAGKSSLLNALAGRDSAIVTEIAGT 254 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR +++ + + +DT G+ ++ D K+ I +W I AD V V DS Sbjct: 255 TRDVLKEHIHINGMPVHIIDTAGLRDSPDKVEKIGIERAWQAISEADHVLFVTDSTTTDI 314 Query: 117 VNIHDLLKEIAKRSSRLI---LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 + + + E R I +I NK D + L Q + + + + +SA + Sbjct: 315 ADPYKIWPEFMARLPEGIPTTVIKNKADLSDLQVGLNQVKTEHGDMPV---INISAKQSD 371 Query: 174 GCDDVLNYLCSTL 186 G D + ++L T+ Sbjct: 372 GIDTLRDHLAKTM 384 >gi|332362231|gb|EGJ40031.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1056] Length = 436 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + S + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCV 143 K D + Sbjct: 295 KWDTL 299 >gi|307946716|ref|ZP_07662051.1| ribosome-associated GTPase EngA [Roseibium sp. TrichSKD4] gi|307770380|gb|EFO29606.1| ribosome-associated GTPase EngA [Roseibium sp. TrichSKD4] Length = 478 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 10/186 (5%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E GE+ E D V R VA+VG NAGKSTL+NR +G + + TR + Sbjct: 187 EDGEL--IEEEDDPVGTKDRPLRVAIVGRPNAGKSTLINRMLGEDRMLTGPEAGITRDSI 244 Query: 62 RGIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN 118 +E + DT GI ++ KL + + IK A++V + +D+ + Sbjct: 245 SVDWEWRERHVKLFDTAGIRRKARVQEKLEKLSVADALRAIKFAEVVVVTLDATNSFEKQ 304 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE----KTFMVSATKGH 173 ++ +A+ L++ +NK D V+ E ++ AN+ F + + +S +G Sbjct: 305 DLQIIDLVAREGRALVIAINKWDLVEDREAAWKKIRDANERCFNQIRGVQIATLSGMQGQ 364 Query: 174 GCDDVL 179 G D +L Sbjct: 365 GIDRLL 370 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 9/164 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 VA++G N GKSTL NR VG ++++V TR G + + +DT G+ Sbjct: 2 GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTIVDTAGLE 61 Query: 82 NAK-DSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSR-LILILN 138 +A S M + + I+ A+ + V+D+ + ++ H IA++++ +IL+ N Sbjct: 62 DADASSLEGRMRKQTEDAIEEANAILFVIDARAGVTPLDAH--FAAIARKTTTPVILLAN 119 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K + R E + + + + VSA G G D+ + L Sbjct: 120 KAEG----RAGESGLYESYSLGLGEPIAVSAEHGEGLADLYDAL 159 >gi|224372205|ref|YP_002606577.1| GTP-binding protein EngA [Nautilia profundicola AmH] gi|254783161|sp|B9L7G9|DER_NAUPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|223589108|gb|ACM92844.1| ribosome-associated GTPase EngA [Nautilia profundicola AmH] Length = 461 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 20/188 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIFN 82 VA++G N GKS+L NR + + +IV+ K TTR I + VS + +IV LDT G+ Sbjct: 4 VAILGKPNVGKSSLFNRILRERDAIVSEKAGTTRDIKKREVSLDDDLEEIVLLDTGGLEE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILIL 137 + ++K+ + + K AD+V +VD E+K + + K +IL++ Sbjct: 64 RDELFNKVKEK-ALEVAKEADLVLYMVDGKTIPDEEEIK-----YFRNLQKLGKHIILVV 117 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID K E++ + E+ ++ F +S + G ++ + +P P + Sbjct: 118 NKIDNDKMMEKVYDFYELG-----ADEIFPISVSHNRGVGKLIERIKKFVPKKPKTFEVS 172 Query: 197 QI-SDLPM 203 + ++P+ Sbjct: 173 EFEQEIPL 180 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 12/160 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKS+L+N VG + +IV+ TT + + I F+DT GI Sbjct: 201 VAIVGRVNVGKSSLLNALVGEERAIVSDVDGTTIDPIDENIYHDGWNITFVDTAGIRRRS 260 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 KD ++R + ++ ADI LV+D+ EL I L I K + +I++ N Sbjct: 261 KIKDIEKYALLR-TEKVLEEADIAILVIDAKEGIVELDEKIGGL---IDKHKNGVIIVAN 316 Query: 139 KIDCVKPE--RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 K D E + ++ K ++ VSA G D Sbjct: 317 KWDENAEEFHKFRKEVYYRFKYLYFAPFLAVSAKTGRNID 356 >gi|213966005|ref|ZP_03394195.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium amycolatum SK46] gi|213951419|gb|EEB62811.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium amycolatum SK46] Length = 773 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 14/161 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G ++V++ TT V +V E+ F+DT GI Sbjct: 514 VALVGKPNVGKSSLLNKLSGENRAVVSNVAGTTVDPVDSLVQMDETLWRFVDTAGIRKKT 573 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + Y L R STI +A++V +VD+ ++ +L+ I L++ N Sbjct: 574 KTAKGHEFYASLRTR---STIDNAEVVIFLVDASEQITEQDQRVLRMILDSGRALVVAYN 630 Query: 139 KIDCVKPER--LLEQAEIANKLVFI--EKTFMVSATKGHGC 175 K D + +R LLE+ EI +L + + +SA G Sbjct: 631 KWDLMDEDRRDLLER-EIEEQLAHVPWARRVNISAKTGRAV 670 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+VNRF+G + ++V TR + + + DT G Sbjct: 340 TVAIVGRPNVGKSTMVNRFIGRREAVVEDFPGVTRDRISYLGEWGGRRFWVQDTGGWDPD 399 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + R + + ++ AD++ +VVD+ + + + + + +IL NK + Sbjct: 400 AKGMHAAIARQAETAMETADVIVMVVDTTVGITATEEVMARRLQRAEQPVILAANKFES- 458 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +L + AE + + + SA G G DV++ + ++ P P Sbjct: 459 -DSQLGDVAEF--WALGLGEPHPTSALHGRGNADVMDEVVASFPEVP 502 >gi|46199327|ref|YP_004994.1| GTP-binding protein EngA [Thermus thermophilus HB27] gi|46196952|gb|AAS81367.1| GTP-binding protein [Thermus thermophilus HB27] Length = 431 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 10/127 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKS+L+N +G + IV+ + TTR + + V +DT GI Sbjct: 176 LAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVEFFFGGQRFVLVDTAGIRKRP 235 Query: 85 DSY-HKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNK 139 +S +L IR S + AD+V LVVD RELK L E R ++L++ K Sbjct: 236 ESLVEELAIRRSLRAMDEADVVLLVVDPFQVGDRELK-----LANEALDRGKPVLLVITK 290 Query: 140 IDCVKPE 146 D V E Sbjct: 291 WDLVDKE 297 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L NR + + ++V TR + G+V + + +DT G+++ Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG- 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + K + ++ A++V VD EL +++ + + ++ +IL+ K+D K Sbjct: 63 DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 Query: 145 PE 146 E Sbjct: 123 HE 124 >gi|33239840|ref|NP_874782.1| GTP-binding protein EngA [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|41017014|sp|Q7VDI8|DER_PROMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33237366|gb|AAP99434.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 456 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 10/182 (5%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 K+ ++D VA+VG N GKS+L+N G K +IV+ TTR + + + Sbjct: 168 KELIKDEEEPIQVAIVGRPNVGKSSLLNAICGEKRAIVSAIRGTTRDTIDTSIVREGKLW 227 Query: 73 VFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 +DT GI K + I S+ I+ +D+ LV+D+ + L I + Sbjct: 228 KLIDTAGIRRRKSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEEE 287 Query: 130 SSRLILILNKIDCVKPERL---LEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCS 184 ++++NK D V+ + L + E+ +KL F++ + SA G D + + C+ Sbjct: 288 GRACLVVVNKWDAVEKDTYTMPLMEKELRSKLYFLDWAQMLFTSALTGQRIDPIFS--CA 345 Query: 185 TL 186 +L Sbjct: 346 SL 347 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPG-IF 81 VA++G N GKSTLVNR ++ +IV + T RS G ++E ++V DT G +F Sbjct: 6 VAIIGRPNVGKSTLVNRLCQSREAIVHDQPGVTRDRSYQDGFWGDREFKLV--DTGGLVF 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + + + + A I L+VD + L + + ++L +NK + Sbjct: 64 DDETEFLPEIREQANLALSEASIALLIVDGQQGLTAADEVIAAWLRHSKCEILLAVNKCE 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V E L A +L E + VSA G G ++L+ L S LP Sbjct: 124 SV--ELGLSMAGEFWRLGLGE-PYPVSAIHGAGTGELLDRLISILP 166 >gi|213585218|ref|ZP_03367044.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 330 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 45 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 104 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 105 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 164 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 165 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 205 >gi|332367384|gb|EGJ45117.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1059] Length = 436 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + S + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|325695846|gb|EGD37737.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK160] Length = 479 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 243 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 302 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI++ S+R++L LNK Sbjct: 303 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLL-EISQDSNRIVL-LNK 360 Query: 140 IDC 142 D Sbjct: 361 TDL 363 >gi|253576396|ref|ZP_04853726.1| ribosome-associated GTPase EngA [Paenibacillus sp. oral taxon 786 str. D14] gi|251844289|gb|EES72307.1| ribosome-associated GTPase EngA [Paenibacillus sp. oral taxon 786 str. D14] Length = 442 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 6/177 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKST+ NR +G +++IV K TR + G +DT GI + Sbjct: 7 VVAIVGRPNVGKSTIFNRIIGDRLAIVEDKPGITRDRIYGASEWNGKPFSIIDTGGIELD 66 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ K + + I+ AD++ + D+ + + ++ + + +I+ +NK+D Sbjct: 67 DEEPILKSIRMQAELAIEEADVIVFMCDAKAGVTTSDEEVANLLYRSGKPVIVAVNKVDN 126 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP-LAPWVYSADQI 198 + R+ E N L F E VS + G G D+L+ + LP LA Y D I Sbjct: 127 IG--RIDNIYEFYN-LGFGE-PIGVSGSHGTGIGDLLDAIADNLPELADDEYDDDVI 179 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL+G N GKS+LVN +G + IV+ TTR + + + V +DT G+ Sbjct: 181 VALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDTPFEKDGQRYVLIDTAGMRKRG 240 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I+ AD+V ++++ E +I E K S I ++N Sbjct: 241 KVYETTEKYSVMRAMKAIERADVVLVLINGEEGIIEQDKHIAGYAYEAGKAS---IFVVN 297 Query: 139 KIDCV-KPERLLEQAE 153 K D V K ++ + Q E Sbjct: 298 KWDVVEKDDKTMHQFE 313 >gi|213649668|ref|ZP_03379721.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 339 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 54 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 113 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 114 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 173 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 174 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 214 >gi|153820111|ref|ZP_01972778.1| probable tRNA modification GTPase TrmE [Vibrio cholerae NCTC 8457] gi|126509342|gb|EAZ71936.1| probable tRNA modification GTPase TrmE [Vibrio cholerae NCTC 8457] Length = 294 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 59 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 118 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 119 DAVEKIGIERAWEEIRQADRVLFMVDG 145 >gi|294673439|ref|YP_003574055.1| tRNA modification GTPase TrmE [Prevotella ruminicola 23] gi|294472346|gb|ADE81735.1| tRNA modification GTPase TrmE [Prevotella ruminicola 23] Length = 448 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+NR + +IV+ TTR + + F+DT GI + Sbjct: 219 VAIVGKTNVGKSTLLNRLLKDDRAIVSDVHGTTRDTIEDTIDINGITFRFIDTAGIRQTQ 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ I +++ I A IV ++D+ + I+D+L+ + +LI+I NK D Sbjct: 279 DEVEQIGITRTYAAIDKARIVLWLIDAEPSTE-EINDILQHTENK--KLIVIKNKAD 332 >gi|260558088|ref|ZP_05830299.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 19606] gi|260408442|gb|EEX01749.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 19606] Length = 454 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 206 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 266 GLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 325 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 326 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 376 Query: 186 LPLAP 190 P Sbjct: 377 AGFHP 381 >gi|126657505|ref|ZP_01728661.1| tRNA modification GTPase [Cyanothece sp. CCY0110] gi|126621209|gb|EAZ91922.1| tRNA modification GTPase [Cyanothece sp. CCY0110] Length = 460 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 3/127 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + + +IVT TTR +V + I LDT G Sbjct: 223 RNGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S AD+V L +D+ V ++ + I R IL++NK Sbjct: 283 IRQTTDQVEKIGVERSRLAASQADLVLLTIDATVGWTVEDSEIYQPI--RHLPTILVINK 340 Query: 140 IDCVKPE 146 ID P+ Sbjct: 341 IDLATPD 347 >gi|122701641|emb|CAL88210.1| GTPase [Helicobacter pylori] gi|122702203|emb|CAL88292.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFSISVSHNRGISALIDAILSALNLNP 170 >gi|55820417|ref|YP_138859.1| GTP-binding protein EngA [Streptococcus thermophilus LMG 18311] gi|55822299|ref|YP_140740.1| GTP-binding protein EngA [Streptococcus thermophilus CNRZ1066] gi|81820353|sp|Q5M1D9|DER_STRT1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81820516|sp|Q5M5X5|DER_STRT2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|55736402|gb|AAV60044.1| phosphoglycerate dehydrogenase-related protein [Streptococcus thermophilus LMG 18311] gi|55738284|gb|AAV61925.1| GTP-binding protein, putative [Streptococcus thermophilus CNRZ1066] Length = 436 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAGIAMTEADVIVFVV-SGKEGVTDADEYVARILYKTNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +A+I + + + VS+ G G DVL+ + LP Sbjct: 123 -NPEM---RADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVGNLP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR +I V + + +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K I S I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSIMRSMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D +K Sbjct: 295 KWDTIK 300 >gi|154246486|ref|YP_001417444.1| GTP-binding protein EngA [Xanthobacter autotrophicus Py2] gi|238686724|sp|A7IIE4|DER_XANP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|154160571|gb|ABS67787.1| small GTP-binding protein [Xanthobacter autotrophicus Py2] Length = 458 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V + TR G + +DT G+ A Sbjct: 4 SLAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDARLGDLSFRIVDTAGLEEA 63 Query: 84 KDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + +R + + I HAD + ++D+ L + K +IL+ NK + Sbjct: 64 DAASLEGRMRAQTEAAIGHADAILFMIDARIGLTPTDRAFADLVRKCGKPVILLANKSEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R E + + + SA G G D+ + +C LP Sbjct: 124 ----RGGEAGTLEAFALGLGTPLPFSAEHGEGLSDLYDAICDALP 164 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 18/187 (9%) Query: 14 DFVQDNS-----RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 DFV++ + R V ++G NAGKSTL+NR +G + + TR + V+ Sbjct: 180 DFVEEEADDKPRRPIKVTVLGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVEVTYA 239 Query: 69 ESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDL 122 +++ DT G+ +D KL + +K A++V L+VD+ E + I DL Sbjct: 240 GAKLEVFDTAGLRKRARIEDKLEKLSAADALRAMKFAEVVVLLVDATHPFEEQDLRIADL 299 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQ-AEIANKLVFIEKT---FMVSATKGHGCDDV 178 +A+ L++ NK D V L+ + E ++L+ K VS GHG D + Sbjct: 300 ---VAREGRALVIGYNKSDLVARGGLITRLREDVDRLLPQVKGVPIVPVSGLMGHGLDKL 356 Query: 179 LNYLCST 185 + + S Sbjct: 357 VAAISSA 363 >gi|324993642|gb|EGC25561.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK405] gi|324995046|gb|EGC26959.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK678] gi|327462911|gb|EGF09232.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1] Length = 436 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + S + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|192362315|ref|YP_001981972.1| GTP-binding protein EngA [Cellvibrio japonicus Ueda107] gi|238692428|sp|B3PDM5|DER_CELJU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190688480|gb|ACE86158.1| GTP-binding protein EngA [Cellvibrio japonicus Ueda107] Length = 466 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTNSRDALVADYPGLTRDRKYGEARLENRRFIVIDTGGISGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VDS L + + + + + ++ NKID + Sbjct: 64 EEGIDSAMAGQSLLAIQEADIVLFIVDSRVGLNPADELIARHLRVHNKKTYVVANKIDGM 123 Query: 144 KPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P+ L E+ + + +AT G G ++ + + P P Sbjct: 124 DPDIALAPFYELG-----MGEVHPTTATHGRGVRSLMEDVLAEYPEIP 166 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVNR +G +V + TTR + + + +DT G+ K Sbjct: 179 IAIVGRPNVGKSTLVNRLLGEDRVVVYDQPGTTRDSIYINYTRFDKPYTLIDTAGVRRRK 238 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + K I + I A++V LV+D+ + L+ + L++ LNK D Sbjct: 239 NIDLAVEKFSIVKTMQAIADANVVILVMDASEGIVEQDLHLMGTAIEAGRALVIALNKWD 298 Query: 142 CV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 + + + + E+ +L F++ +SA G G ++ Sbjct: 299 GLDESHKYYVKNELERRLRFVDFANIHFISALHGTGVGNL 338 >gi|182435517|ref|YP_001823236.1| putative ATP/GTP-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464033|dbj|BAG18553.1| putative ATP/GTP-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 506 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 24/209 (11%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + ++ VA+ G TNAGKS+L+NR GA V + T V Sbjct: 264 EIAEMKTGREIKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 323 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 324 RRAETPSGRVYTLADTVGFVRHLPHHLVEAFRSTMEEVGESDLILHVVDGSHPVPEEQLA 383 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + ++++++ R I+++NK D P +RLL + A VSA G G Sbjct: 384 AVREVIRDVGAVDVREIVVINKADAADPLVLQRLLRNEKHA---------IAVSARTGAG 434 Query: 175 CDDVLNYLCSTLP--------LAPWVYSA 195 D++L + + LP L P++ A Sbjct: 435 IDELLALIDTELPRPSVEIEVLVPYIQGA 463 >gi|90194136|gb|ABD92629.1| ThdF [Pasteurella multocida subsp. gallicida] Length = 436 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ ++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 190 DHVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 249 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +WS I+ AD + L++DS Sbjct: 250 IDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDS 294 >gi|315284189|ref|ZP_07872091.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120] gi|313612167|gb|EFR86407.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120] Length = 425 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 185 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 244 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL L + A +++LNK Sbjct: 245 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTAEDEALFE--AAAGHNYVVVLNK 302 Query: 140 IDC 142 D Sbjct: 303 TDL 305 >gi|270297048|ref|ZP_06203247.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273035|gb|EFA18898.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 402 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 17/169 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS-IVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G N+GKS+LVN G ++V+ TT + + + +F+DTPG + Sbjct: 12 IAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFIDTPGFDDD 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + T++ ADI L+ ++ L+ +K +A R +ILILNK D Sbjct: 72 EGELGGMRVERTLKTVEKADIALLLYEADGTLE---QQWIKLLAAREIPVILILNKAD-- 126 Query: 144 KPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCSTLP 187 + + A+ ++ IEK +VSA +G G + + + LP Sbjct: 127 ------SRQDTASVVLRIEKECGQVPVVVSAKEGTGIQGIFDAILEKLP 169 >gi|242079095|ref|XP_002444316.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor] gi|241940666|gb|EES13811.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor] Length = 548 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 9/160 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N + ++ +IVT TTR +V VS + LDT GI Sbjct: 304 IAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETD 363 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSS-RLILILN 138 D K+ ++ S + AD++ + + + + K+ H L+ + S+ ++L++N Sbjct: 364 DVVEKIGVKRSEAAAMGADLIVMAISAVDGWTDDDTKLMEHVLINRKSSGSAVPMVLVIN 423 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 K+DC P EQ E + L FI K A G G D+ Sbjct: 424 KVDCA-PFVPGEQFEQFSGL-FI-KHVQTCAVTGKGISDL 460 >gi|169634401|ref|YP_001708137.1| GTP-binding protein EngA [Acinetobacter baumannii SDF] gi|254783130|sp|B0VKR4|DER_ACIBS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169153193|emb|CAP02283.1| putative GTP-binding protein EngA [Acinetobacter baumannii] Length = 469 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + + +DT GI + Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGES 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + +P Sbjct: 124 HAEAAL----VEFYKLGLGEPLQVAASHGRGVQQMLEDVLQDIP 163 Score = 36.2 bits (82), Expect = 5.8, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +A++G N GKSTLVNR +G + + TTR + + + +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGV 234 >gi|163736771|ref|ZP_02144190.1| Small GTP-binding protein domain [Phaeobacter gallaeciensis BS107] gi|161390641|gb|EDQ14991.1| Small GTP-binding protein domain [Phaeobacter gallaeciensis BS107] Length = 508 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 18/172 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ +A Sbjct: 26 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLEDA 85 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKID 141 D S M RL+ + AD VCL + R I + EI K+S+ +IL NK + Sbjct: 86 TDNSLEGRMRRLTERAVDMAD-VCLFMIDARVGVTPIDQMFAEILRKKSAHVILAANKAE 144 Query: 142 CVKPERLLEQAEIANKL----VFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 A A L + + + +S G G +D+ + L +PLA Sbjct: 145 G--------NAADAGVLDAWGLGLGEPIRLSGEHGEGLNDLYSQL---MPLA 185 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 22/188 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + TR + + ++ + DT G+ Sbjct: 225 VAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQDVPMRIFDTAGMRKKA 284 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 285 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVVVAVNK 342 Query: 140 --IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 I+ K E+L E ++L+ + VSA G G D DV N Sbjct: 343 WDIEDEKQEKLRNLKEAFDRLLPQLRGAPLITVSAKTGKGLDRLHAAIMRAYDVWNRRVP 402 Query: 185 TLPLAPWV 192 T L W+ Sbjct: 403 TAALNRWL 410 >gi|122700695|emb|CAL87936.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ++ A + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLNLNP 170 >gi|282877893|ref|ZP_06286702.1| tRNA modification GTPase TrmE [Prevotella buccalis ATCC 35310] gi|281299894|gb|EFA92254.1| tRNA modification GTPase TrmE [Prevotella buccalis ATCC 35310] Length = 469 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 4/126 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TN GKSTL+N+ + + +IV++ TTR ++ K F+DT GI + Sbjct: 238 AVAIVGKTNVGKSTLLNQLLKEEKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRST 297 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC- 142 D +L I ++ + A I+ +VD + I ++L+ + ++IL+ NKID Sbjct: 298 NDEIERLGIERTYKKLNEARIILWLVDEQPN-RSEIQEMLEYCEDK--QVILVQNKIDIR 354 Query: 143 VKPERL 148 P++L Sbjct: 355 TIPDKL 360 >gi|242255856|gb|ACS88912.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ++ A + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVLDLNP 170 >gi|299820854|ref|ZP_07052743.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601] gi|299817875|gb|EFI85110.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601] Length = 457 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + L + L + A + +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQNEALTIEDEALFE--AAKGHTFVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|289811789|ref|ZP_06542418.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 377 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 92 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 151 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 152 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 211 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 212 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 252 >gi|116515306|ref|YP_802935.1| EngA [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257160|gb|ABJ90842.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 449 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 4/126 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+G +N GKS+L N +K ++ + TTR G + KE +I +DT GI N K Sbjct: 5 IALIGKSNVGKSSLFNLLTNSKSALTSDLPSTTRDRQYGFLKIKEKKINIIDTAGINNIK 64 Query: 85 DSYHKLMIRLSWS----TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + L+ + ++ I+ ++ +VD+ EL + + +LK I K + + L++NKI Sbjct: 65 RKFFNLIEKQAYKQTILAIQEFHLIFFLVDARYELTIVDYFILKLIRKENKNIFLLINKI 124 Query: 141 DCVKPE 146 D +K E Sbjct: 125 DLMKRE 130 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 22/234 (9%) Query: 11 EHKDFVQDNSRSGCVAL----VGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 E K F+++N + + + +G TNAGKSTL+N + + I + TTR ++ + Sbjct: 170 EKKIFLENNKINKYINIKICFLGKTNAGKSTLINSLLNSNRVITSSTKNTTRDMIEISLI 229 Query: 67 EKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 K+ + +F DT GI KD + + + S+ +K I +V+DS+ + ++ Sbjct: 230 NKKIKYIFTDTAGINKKRKKKDFLNYIFEKKSFDVVKKNQIAIIVIDSYVGISSKDLSII 289 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL- 179 + ++ +I NK D + ER + + E +L FI K +SA K + Sbjct: 290 TFLINQNVAFFIIFNKWDLISKERKKKIKQENKYRLKFIRNIKIIYLSAIKKTNLKKIFL 349 Query: 180 ---------NYLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIP 224 + ST L + A + LPM T +I + K + HL ++ P Sbjct: 350 QIKIIYNESKKIFSTSSLIKIINKATKKHSLPM-GVTGKIIKLK-YAHLGRKNP 401 >gi|262172771|ref|ZP_06040449.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus MB-451] gi|261893847|gb|EEY39833.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus MB-451] Length = 453 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDG 304 >gi|158425952|ref|YP_001527244.1| GTP-binding protein EngA [Azorhizobium caulinodans ORS 571] gi|172047845|sp|A8HVL5|DER_AZOC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158332841|dbj|BAF90326.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 453 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR G + +DT G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDARLGDLAFRIVDTAGLEEA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 DS M + + I AD + ++D+ L +A+RS + IL+ NK + Sbjct: 64 DADSLEGRMRAQTETAIGDADALLFLIDARVGL-TPTDRAFASLARRSGKPTILVANKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R E + + + +SA G G D+ + +C LP Sbjct: 123 G----RGGEAGAMEAYELGLGAPVPLSAEHGEGLSDLYDAICEALP 164 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 12/170 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G NAGKSTL+NR +G + + TR + V+ + DT G+ Sbjct: 189 VAVIGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVEVTWNGRALEVFDTAGLRKRA 248 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 +D KL + +K A++V +++D+ + E + I DL + + L+L N Sbjct: 249 RIEDKLEKLSAADALRAMKFAEVVVVLMDATKPFEEQDLRIADL---VVREGRALVLGYN 305 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 K D V P RL E+A+ V +S G G D ++ + +T Sbjct: 306 KSDLVGPAAFSRLREEADHWLPQVKGVPIVPLSGLTGRGLDKLVEAIAAT 355 >gi|241665032|ref|YP_002983392.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D] gi|240867059|gb|ACS64720.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D] Length = 481 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 213 GQLAGIRTAVDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 272 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 TR V+ + + + +DT G+ + +D ++ I +W+ I AD+V ++D+ Sbjct: 273 TRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDA 327 >gi|90194066|gb|ABD92594.1| ThdF [Pasteurella multocida] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ ++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 190 DHVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 249 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +WS I+ AD + L++DS Sbjct: 250 IDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDS 294 >gi|34762556|ref|ZP_00143552.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887777|gb|EAA24850.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 440 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 10/145 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +G++ F E +D ++ +A++G NAGKS+LVN+ G + +IV+ TTR + Sbjct: 164 IGKMDFPEEDEDVLK-------LAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAID 216 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ K+++ + +DT GI ++S + + IK AD+ L++D+ L Sbjct: 217 TLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQD 276 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + A+ +I+++NK D V+ Sbjct: 277 KRIAGIAAEELKPIIIVMNKWDLVE 301 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG K++IV TR + S+ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSSSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L +EIA K++ +IL + Sbjct: 65 NDF--LMAKIKEQAEVAMNEADVILFVVDG----KSGLNPLDEEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|325124482|gb|ADY84005.1| GTP-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 469 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + + +DT GI + Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGES 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPLQVAASHGRGIQQMLEDVLAEVP 163 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 11/177 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTLVNR +G + + TTR + + + +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKG 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K I + +K A +V +VVD+ + L+ + +++ +NK D Sbjct: 239 KVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWD 298 Query: 142 CVKP-ERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL-----NYLCSTLPLAP 190 + +R + ++ + FI K ++SA G G D+ Y + L ++P Sbjct: 299 NMSEYDRKQCKLDVERRFDFIPWAKIHLISALHGTGVGDLYPSIHRAYESANLKVSP 355 >gi|237743522|ref|ZP_04574003.1| GTP-binding protein [Fusobacterium sp. 7_1] gi|229433301|gb|EEO43513.1| GTP-binding protein [Fusobacterium sp. 7_1] Length = 440 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 10/145 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +G++ F E +D ++ +A++G NAGKS+LVN+ G + +IV+ TTR + Sbjct: 164 IGKMDFPEEDEDVLK-------LAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAID 216 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ K+++ + +DT GI ++S + + IK AD+ L++D+ L Sbjct: 217 TLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQD 276 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + A+ +I+++NK D V+ Sbjct: 277 KRIAGIAAEELKPIIIVMNKWDLVE 301 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG K++IV TR + S+ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L +EIA K++ +IL + Sbjct: 65 NDF--LMAKIKEQAEVAMNEADVILFVVDG----KSGLNPLDEEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|237741193|ref|ZP_04571674.1| GTP-binding protein [Fusobacterium sp. 4_1_13] gi|229430725|gb|EEO40937.1| GTP-binding protein [Fusobacterium sp. 4_1_13] Length = 440 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 10/145 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +G++ F E +D ++ +A++G NAGKS+LVN+ G + +IV+ TTR + Sbjct: 164 IGKMDFPEEDEDVLK-------LAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAID 216 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ K+++ + +DT GI ++S + + IK AD+ L++D+ L Sbjct: 217 TLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQD 276 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + A+ +I+++NK D V+ Sbjct: 277 KRIAGIAAEELKPIIIVMNKWDLVE 301 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG K++IV TR + S+ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L +EIA K++ +IL + Sbjct: 65 NDF--LMAKIKEQAEVAMNEADVILFVVDG----KSGLNPLDEEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|229530209|ref|ZP_04419598.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae 12129(1)] gi|229332342|gb|EEN97829.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae 12129(1)] Length = 453 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDG 304 >gi|169634938|ref|YP_001708674.1| tRNA modification GTPase TrmE [Acinetobacter baumannii SDF] gi|169153730|emb|CAP02931.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Acinetobacter baumannii] Length = 454 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 206 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 266 GLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 325 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 326 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 376 Query: 186 LPLAP 190 P Sbjct: 377 AGFHP 381 >gi|163736360|ref|ZP_02143779.1| GTP-binding protein, HSR1-related [Phaeobacter gallaeciensis BS107] gi|161390230|gb|EDQ14580.1| GTP-binding protein, HSR1-related [Phaeobacter gallaeciensis BS107] Length = 423 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 10/171 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + +I+ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRRVQLPDGPEIILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIAKRSSRLIL-ILN 138 + R + + AD+V V D SH E + ++ +L + SR L + N Sbjct: 264 LPTELVAAFRATLEEVLAADVVVHVRDISHDETQNQAADVESILASLGVDDSRARLEVWN 323 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF-MVSATKGHGCDDVLNYLCSTLPL 188 K+D + EQAE + E +SA G G +D+L + S L L Sbjct: 324 KLDLLDD----EQAEARRQRAEREDGIHAISAISGEGLEDLLADITSQLRL 370 >gi|163743210|ref|ZP_02150592.1| GTP-binding protein EngA [Phaeobacter gallaeciensis 2.10] gi|161383627|gb|EDQ08014.1| GTP-binding protein EngA [Phaeobacter gallaeciensis 2.10] Length = 508 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 18/172 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ +A Sbjct: 26 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLEDA 85 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKID 141 D S M RL+ + AD VCL + R I + EI K+S+ +IL NK + Sbjct: 86 TDNSLEGRMRRLTERAVDMAD-VCLFMIDARVGVTPIDQMFAEILRKKSAHVILAANKAE 144 Query: 142 CVKPERLLEQAEIANKL----VFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 A A L + + + +S G G +D+ + L +PLA Sbjct: 145 G--------NAADAGVLDAWGLGLGEPIRLSGEHGEGLNDLYSQL---MPLA 185 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 22/188 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + TR + + ++ + DT G+ Sbjct: 225 VAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQDVPMRIFDTAGMRKKA 284 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 285 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVVVAVNK 342 Query: 140 --IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 I+ K E+L E ++L+ + VSA G G D DV N Sbjct: 343 WDIEDEKQEKLRNLKEAFDRLLPQLRGAPLITVSAKTGKGLDRLHAAIMRAYDVWNRRIP 402 Query: 185 TLPLAPWV 192 T L W+ Sbjct: 403 TAALNRWL 410 >gi|288934098|ref|YP_003438157.1| ribosome-associated GTPase EngA [Klebsiella variicola At-22] gi|290508296|ref|ZP_06547667.1| ribosome-associated GTPase EngA [Klebsiella sp. 1_1_55] gi|288888827|gb|ADC57145.1| ribosome-associated GTPase EngA [Klebsiella variicola At-22] gi|289777690|gb|EFD85687.1| ribosome-associated GTPase EngA [Klebsiella sp. 1_1_55] Length = 492 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 12/176 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ++QA + + + ++A+ G G +L L PWV D+IS Sbjct: 124 D----VDQAMADFWSLGLGDIYPIAASHGRGVTSLLEQA-----LLPWV---DEIS 167 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 207 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRG 266 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 267 KITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 326 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVL 179 + E + EQ + + +L FI+ + +SA G G ++ Sbjct: 327 GLSQE-VKEQVKETLDYRLGFIDFARVHFISALHGSGVGNLF 367 >gi|254466194|ref|ZP_05079605.1| GTP-binding protein EngA [Rhodobacterales bacterium Y4I] gi|206687102|gb|EDZ47584.1| GTP-binding protein EngA [Rhodobacterales bacterium Y4I] Length = 487 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V + TR + G + + +DT G+ +A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLEDA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-SSRLILILNKID 141 D S M RL+ + ADI ++D+ R ++ +I +R S+ +IL NK + Sbjct: 64 TDNSLEGRMRRLTERAVDMADICLFMIDA-RTGVTPTDEIFADILRRKSAHVILAANKAE 122 Query: 142 CVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E +LE + + + +S G G D+ L PLA Sbjct: 123 GNAAEAGVLEAYGLG-----LGEPLRLSGEHGEGMPDLYGILQ---PLA 163 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + + TR + ++ + DT G+ Sbjct: 204 VAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLKINWNGVPMRVFDTAGMRKKA 263 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 264 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDAS--IPFEQQDLRIADLAEREGRAVVVAVNK 321 Query: 140 IDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD 176 D K ++L + E +L+ + VSA G G D Sbjct: 322 WDAEEHKQDKLRDLKEAFGRLLPQLRGAPLVTVSAKTGKGLD 363 >gi|325978979|ref|YP_004288695.1| GTP-binding protein EngA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178907|emb|CBZ48951.1| GTP-binding protein EngA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + +I R+++ +IL++NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVSKILYRTNKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRSDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I +DIV +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTIE 300 >gi|294675553|ref|YP_003576169.1| ribosome-associated GTPase EngA [Prevotella ruminicola 23] gi|294472941|gb|ADE82330.1| ribosome-associated GTPase EngA [Prevotella ruminicola 23] Length = 437 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 10/185 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV+ + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRHAIVSDEAGTTRDRQYGKCEWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N+ D + + + + + AD+V + D + + D+ + + + +IL+ NK Sbjct: 62 VNSDDVFEEEIRKQVIIATEEADLVLFLCDINNGVTGWDMDVAQILRRAKLPVILVANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D K L +Q E + + F +SA G G D+L+ + LP P D++ D Sbjct: 122 DDGK--DLYDQYEFYK--LGLGDPFPISAATGSGTGDLLDKVLEILPEKP----KDELED 173 Query: 201 -LPMF 204 +P F Sbjct: 174 GIPRF 178 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTDIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S I+++D+ L++D+ R ++ ++ + I K + L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRAIENSDVCVLMLDATRGIEAQDMNIFQLIQKNNKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 >gi|332358244|gb|EGJ36072.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK355] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + EI + + F VS+ G G DVL+ + LP V + D I Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVVENPDMI 175 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|306834169|ref|ZP_07467289.1| ribosome-associated GTPase EngA [Streptococcus bovis ATCC 700338] gi|304423742|gb|EFM26888.1| ribosome-associated GTPase EngA [Streptococcus bovis ATCC 700338] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + +I R+++ +IL++NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVSKILYRTNKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRSDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSDGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I +DIV +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTIE 300 >gi|288906012|ref|YP_003431234.1| GTP-binding protein [Streptococcus gallolyticus UCN34] gi|288732738|emb|CBI14312.1| putative GTP-binding protein [Streptococcus gallolyticus UCN34] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + +I R+++ +IL++NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVSKILYRTNKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRSDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I +DIV +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTIE 300 >gi|262402089|ref|ZP_06078653.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586] gi|262351735|gb|EEZ00867.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586] Length = 453 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDG 304 >gi|260496851|ref|ZP_05815971.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_33] gi|260196593|gb|EEW94120.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_33] Length = 440 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 10/145 (6%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 +G++ F E +D ++ +A++G NAGKS+LVN+ G + +IV+ TTR + Sbjct: 164 IGKMDFPEEDEDVLK-------LAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAID 216 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ K+++ + +DT GI ++S + + IK AD+ L++D+ L Sbjct: 217 TLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQD 276 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + A+ +I+++NK D V+ Sbjct: 277 KRIAGIAAEELKPIIIVMNKWDLVE 301 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG K++IV TR + S+ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L +EIA K++ +IL + Sbjct: 65 NDF--LMAKIKEQAEVAMNEADVILFVVDG----KSGLNPLDEEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|317049132|ref|YP_004116780.1| ribosome-associated GTPase EngA [Pantoea sp. At-9b] gi|316950749|gb|ADU70224.1| ribosome-associated GTPase EngA [Pantoea sp. At-9b] Length = 496 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + + + +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDDREYILIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 270 KITDTVEKFSVIKTLQAIEDANVVMLVIDARAGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E E + +L FI+ + +SA G G ++ Y CST Sbjct: 330 GLSQEVKDEVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVTEAYDCST 381 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 12/178 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ + + + R L+ NK D + Sbjct: 64 EEGVENRMAEQSLLAIEEADVVLFLVDARAGVMPADQQIANHLRSRQKATFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 P E A + + + + ++A+ G G +L L PW+ D+++ L Sbjct: 124 DP----EAAVLDFYALGLGEIHAIAASHGRGVTSLLE-----TALLPWM---DEVAPL 169 >gi|198274784|ref|ZP_03207316.1| hypothetical protein BACPLE_00943 [Bacteroides plebeius DSM 17135] gi|198272231|gb|EDY96500.1| hypothetical protein BACPLE_00943 [Bacteroides plebeius DSM 17135] Length = 265 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TNAGKSTL+N + + +IV+ TTR ++ ++ F+DT GI Sbjct: 17 VAIVGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRFIDTAGIRETT 76 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS------HRELKVNIHDLLKEIAKRSSRLILILN 138 D+ L I S+ + ADIV V+D+ +R+L I K + L+++ N Sbjct: 77 DTIESLGIERSFQKLDQADIVLWVIDATCAEEQYRQLADKILPRCK-----NKHLVIVFN 131 Query: 139 KID 141 K D Sbjct: 132 KAD 134 >gi|327482917|gb|AEA77324.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae LMA3894-4] Length = 453 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDG 304 >gi|268680372|ref|YP_003304803.1| ribosome-associated GTPase EngA [Sulfurospirillum deleyianum DSM 6946] gi|268618403|gb|ACZ12768.1| ribosome-associated GTPase EngA [Sulfurospirillum deleyianum DSM 6946] Length = 477 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 22/174 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR A+++I + TTR I V E + LDT G+ + Sbjct: 4 IAIIGLPNVGKSSLFNRIAKARIAITSDFSGTTRDIKSHQVYITEKPCLILDTGGLDKST 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKV--NIHDLLKEIAKRSSRLILIL 137 + + + +S K AD++ +VVD S E K+ + L K IA L++ Sbjct: 64 ELFENVH-DMSMQASKKADVILMVVDGKLLPSEEEKKIFYALQALNKPIA-------LVI 115 Query: 138 NKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER E +E E F +S + G +L ++ S LP AP Sbjct: 116 NKIDNDKEMERAWEFSEFG-----AEHVFPLSVSHNRGVSALLEWIGSYLP-AP 163 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 8/151 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N VG + ++V++ TT V + E I F+DT G+ Sbjct: 210 VAIIGRVNVGKSSLLNALVGKQRAVVSNVAGTTIDPVDESIEYNEKVINFVDTAGLRRRG 269 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNK 139 + K + + ++ A+I LV+D+ EL I L++E + I++LNK Sbjct: 270 KIEGIEKFALMRTKEMLERANIALLVLDASEPFLELDERIAGLVEE---NNLACIIVLNK 326 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 D + AE+ ++ F+ +++ + Sbjct: 327 WDEAMDDFEKVTAEVRHRFKFLSYAPLITVS 357 >gi|255283806|ref|ZP_05348361.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469] gi|255265689|gb|EET58894.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469] Length = 459 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 11/152 (7%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N +G + +IVT TTR + + + +DT GI + +D+ Sbjct: 227 IVGKPNAGKSSLLNVLLGEERAIVTEIAGTTRDTLEEEIQIHGVSLQIIDTAGIRDTQDT 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID--CVK 144 K+ + + + + AD++ V D+ L N ++ +I R ++I++LNK+D V Sbjct: 287 VEKIGVEKALAYAEDADLILYVADAATGLDENDIRIMDKI--REKKVIVLLNKMDLEVVT 344 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 E + EI NK V VSA + G D Sbjct: 345 SEEQIR--EILNKPV-----IPVSAKEESGID 369 >gi|254468542|ref|ZP_05081948.1| tRNA modification GTPase TrmE [beta proteobacterium KB13] gi|207087352|gb|EDZ64635.1| tRNA modification GTPase TrmE [beta proteobacterium KB13] Length = 453 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 5/118 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKSTL+N F +V+IVT+ TTR VR ++ K + F+DT GI + Sbjct: 225 VCLVGKPNVGKSTLMNLFSQEEVAIVTNVPGTTRDPVRASIALKGVPLNFVDTAGIRETE 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKRSSRLILILNKID 141 D + I+ + I + +V ++++S E D LK+ I + +I +LNKID Sbjct: 285 DIVEQAGIKKTREIISRSALVLVLLESLDE----ADDYLKQNILQDECNVIWLLNKID 338 >gi|163741105|ref|ZP_02148497.1| GTP-binding protein HflX [Phaeobacter gallaeciensis 2.10] gi|161385458|gb|EDQ09835.1| GTP-binding protein HflX [Phaeobacter gallaeciensis 2.10] Length = 423 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 10/171 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + +I+ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRRVQLPDGPEIILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIAKRSSRLIL-ILN 138 + R + + AD+V V D SH E + ++ +L + SR L + N Sbjct: 264 LPTELVAAFRATLEEVLAADVVVHVRDISHDETQNQAADVESILASLGVDDSRARLEVWN 323 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF-MVSATKGHGCDDVLNYLCSTLPL 188 K+D + EQAE + E +SA G G +D+L + S L L Sbjct: 324 KLDLLDD----EQAEARRQRAEREDGIHAISAISGEGLEDLLADITSQLRL 370 >gi|125718602|ref|YP_001035735.1| GTP-binding protein EngA [Streptococcus sanguinis SK36] gi|166225867|sp|A3CPT0|DER_STRSV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|125498519|gb|ABN45185.1| GTP-binding protein, putative [Streptococcus sanguinis SK36] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + EI + + F VS+ G G DVL+ + LP V + D I Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVVENPDMI 175 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|4467677|emb|CAB37790.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ FLDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L++ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNFKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDTDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|258544267|ref|ZP_05704501.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826] gi|258520505|gb|EEV89364.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826] Length = 446 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKS+L+N VG + +IVT + TTR IVR + + LDT G+ A D Sbjct: 221 IAGKPNAGKSSLLNALVGEERAIVTAQAGTTRDIVRETILIHGMPVNILDTAGLREASDL 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + IR + + AD++ L+ D L E A + L+L NK D P Sbjct: 281 VEQEGIRRTRQALNQADLILLLRDGSALDDRGDETLPPESAD--TPLLLAYNKADQTPPA 338 Query: 147 RLLEQAEIANKLVFIEKT 164 QA+ A+ L KT Sbjct: 339 ---VQAQHADGLWLSAKT 353 >gi|226312035|ref|YP_002771929.1| GTP-binding protein EngA [Brevibacillus brevis NBRC 100599] gi|254783139|sp|C0ZCB6|DER_BREBN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226094983|dbj|BAH43425.1| GTP-binding protein EngA [Brevibacillus brevis NBRC 100599] Length = 437 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKST+ NR +G +V+IV TR + G +DT GI F Sbjct: 5 VVAIVGRPNVGKSTIFNRLIGERVAIVEDMPGVTRDRLYGKGEWLTHTFHVIDTGGIEFG 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D M + I AD++ ++ DS + +L + + + ++L +NK D Sbjct: 65 ETDEILTQMRYQAELAIDEADVIIMIADSRTGVTDADVELSRMLNRTGKPVVLAVNKAD- 123 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +A+I + + + F VS + G G D+L +C P Sbjct: 124 -NPEM---RADIYDFYSLGLGEPFPVSGSHGLGLGDMLEEVCQHFP 165 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+++G N GKS+L N +G + IV+ TTR + + V +DT G+ Sbjct: 179 VSIIGRPNVGKSSLTNAILGEERVIVSEVAGTTRDAIDTPFERDDQSYVLVDTAGMRKRG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + +I+ +D+V +V++ + + + +I+I+NK D Sbjct: 239 KVYETTEKYSVMRAMRSIEDSDVVLVVINGEEGIIEQDKKIAGYAHEAGRGVIIIVNKWD 298 Query: 142 CVK 144 ++ Sbjct: 299 AIE 301 >gi|122702129|emb|CAL88255.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAFAFSSFG-----MPKSFSISVSHNRGISALIDAILSALNLNP 170 >gi|158522145|ref|YP_001530015.1| small GTP-binding protein [Desulfococcus oleovorans Hxd3] gi|226741135|sp|A8ZU05|DER_DESOH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158510971|gb|ABW67938.1| small GTP-binding protein [Desulfococcus oleovorans Hxd3] Length = 458 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKSTL NR + ++V TR + G V +DT G + Sbjct: 5 VVILGRPNVGKSTLFNRLTRTQNALVDDMPGVTRDRLYGDVEWNGVFFSLVDTGGFLSGD 64 Query: 85 DSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + I+ I AD V LV D + + + + S + ++NKID Sbjct: 65 DDFFMPHIQSQIHRAIDEADAVLLVFDGKSGISPFDREAMAFLQSASCPVFYLVNKIDS- 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PER + AE + ++ + VS G+G D L+ L + LP Sbjct: 124 -PEREVYTAEFFG--LGLDNLYPVSGAHGYGVTDFLDDLVNALP 164 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+NR +G + IV+ TTR V + + +DT G+ Sbjct: 178 LAVVGRPNVGKSTLINRILGQERMIVSDVPGTTRESVDTVCEIDGRSYLLIDTAGLRRKS 237 Query: 85 DSYHKLMIRLSWSTIK---HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 KL + T+K DI ++VD+ + + +R I ++NK D Sbjct: 238 RVSVKLEKFSAIKTLKSLDRCDIALILVDAEEGVTDQDVTIAGYAFERGCGCIFLVNKWD 297 Query: 142 CVK 144 K Sbjct: 298 LAK 300 >gi|153821980|ref|ZP_01974647.1| tRNA modification GTPase TrmE [Vibrio cholerae B33] gi|229508290|ref|ZP_04397794.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX 330286] gi|229508871|ref|ZP_04398362.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33] gi|229517142|ref|ZP_04406588.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9] gi|229606564|ref|YP_002877212.1| tRNA modification GTPase TrmE [Vibrio cholerae MJ-1236] gi|255746813|ref|ZP_05420759.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS 101] gi|262155893|ref|ZP_06029015.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae INDRE 91/1] gi|31340537|sp|Q9KVY5|MNME_VIBCH RecName: Full=tRNA modification GTPase mnmE gi|126520519|gb|EAZ77742.1| tRNA modification GTPase TrmE [Vibrio cholerae B33] gi|229346205|gb|EEO11177.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9] gi|229354146|gb|EEO19078.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33] gi|229354563|gb|EEO19485.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX 330286] gi|229369219|gb|ACQ59642.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae MJ-1236] gi|255735570|gb|EET90969.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS 101] gi|262030345|gb|EEY48987.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae INDRE 91/1] Length = 453 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDG 304 >gi|229520177|ref|ZP_04409604.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM 11079-80] gi|229342771|gb|EEO07762.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM 11079-80] Length = 453 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDG 304 >gi|218674750|ref|ZP_03524419.1| GTP-binding protein [Rhizobium etli GR56] Length = 397 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 32/196 (16%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK-------EIAKRSSRLIL 135 ++ R + + AD++ V D S + + D+++ + A+ RLI Sbjct: 264 LPTHLVAAFRATLEEVLEADLILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAEKRLIE 323 Query: 136 ILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC--------- 183 + NKID ++PE ++++A A+ +V VSA G G D ++ + Sbjct: 324 VWNKIDRLEPEVHDAMVQKAAGASNVV------AVSAVSGEGVDTLMEEISRRLSGVMTE 377 Query: 184 ------STLPLAPWVY 193 ST L PW+Y Sbjct: 378 PPSAFPSTAALLPWLY 393 >gi|184156330|ref|YP_001844669.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ACICU] gi|183207924|gb|ACC55322.1| predicted GTPase [Acinetobacter baumannii ACICU] Length = 451 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 203 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 263 GLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 322 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 323 IEPR--RLMLIGNKCDLTG-----QPAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 373 Query: 186 LPLAP 190 P Sbjct: 374 AGFHP 378 >gi|218248879|ref|YP_002374250.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801] gi|218169357|gb|ACK68094.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801] Length = 460 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + + +IVT TTR +V + I LDT G Sbjct: 223 RTGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D KL + S AD+V L +D+ + +++ R LIL++NK Sbjct: 283 IRETADRVEKLGVERSRHVASQADLVLLTIDAQMGWTTEDEAIYQQVQHRP--LILVINK 340 Query: 140 ID 141 ID Sbjct: 341 ID 342 >gi|122702881|emb|CAL88630.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFDISVSHNRGISTLIDAILSALNLNP 170 >gi|308809447|ref|XP_003082033.1| GTP-binding protein-like (ISS) [Ostreococcus tauri] gi|116060500|emb|CAL55836.1| GTP-binding protein-like (ISS) [Ostreococcus tauri] Length = 500 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 8/128 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIF 81 +A++G N GKS+L+N G SIV+ TTR + +V +K + + +DT GI Sbjct: 228 TLAIIGRPNVGKSSLLNGLAGEMRSIVSDFSGTTRDSIDTMVEDKYTGKKYTLIDTAGIR 287 Query: 82 ------NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 + D KL + + +K AD+VCLV+D+ + L + + L+L Sbjct: 288 RRTQVKSGSDGAEKLSVGRALQAMKRADVVCLVIDATQGPSQQDFVLAERATQEGCALVL 347 Query: 136 ILNKIDCV 143 +NK D V Sbjct: 348 CINKWDLV 355 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 24/191 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR G K +IV + TR + ES+ + +DT G N Sbjct: 32 VAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRMYTRSYWGESEFMMVDTGGFENLP 91 Query: 85 DSYHKL--MIRLSWSTIKHADI-------------VCLVVDSHRELKVNIHDLLKEIAKR 129 + + R+ I A I + VVD L D+ + + + Sbjct: 92 RNPEGAPKIDRVGGVEILPAMIEAQAAEAVKEAAVLVFVVDGQVGLTEADRDIYRWLRRS 151 Query: 130 SSR--LILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 S L L +NK + E++++ ++ + VSA G G D+L+ +C+T Sbjct: 152 HSDKPLHLAVNKCESTTKGEEQIIDFWQLGDV-----TPLAVSAISGTGTGDLLDNVCAT 206 Query: 186 LPLAPWVYSAD 196 LP P V D Sbjct: 207 LPQPPQVGDGD 217 >gi|91784201|ref|YP_559407.1| small GTP-binding protein [Burkholderia xenovorans LB400] gi|296158986|ref|ZP_06841814.1| GTP-binding proten HflX [Burkholderia sp. Ch1-1] gi|91688155|gb|ABE31355.1| GTP-binding protein HflX [Burkholderia xenovorans LB400] gi|295890861|gb|EFG70651.1| GTP-binding proten HflX [Burkholderia sp. Ch1-1] Length = 404 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 20/165 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFN 82 V+LVG TNAGKSTL N A+ T + R + + ++ Q+V DT G Sbjct: 206 SVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGDEAGQVVVSDTVGFI- 264 Query: 83 AKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILI 136 ++ H+L+ R + HAD++ VVD+ ++++ ++++L I + R +L+ Sbjct: 265 -RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNEVLHAIGADTIRQVLV 323 Query: 137 LNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID V PE +E+ E N I + F+ SA G G D Sbjct: 324 FNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 362 >gi|194337372|ref|YP_002019166.1| small GTP-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|238693397|sp|B4SED0|DER_PELPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194309849|gb|ACF44549.1| small GTP-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 437 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +ALVG N GKSTL NR + + +IV T V R I G K Q + +DT G Sbjct: 4 LIALVGRPNVGKSTLFNRILRQRSAIVDPTPGVTRDRHIAEGEWQGK--QFLLMDTGGYN 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRS---SRLILIL 137 D+ M+ + I+ ADIV + D L + DL L + +R+ +L ++ Sbjct: 62 ADGDTISMAMLEQTLMAIRDADIVIFLTDVRAGL--SYEDLELGRLLQRTFQHKQLFFVV 119 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK++ P+ L+ AE K F F +SA G G D+L+ + +LP Sbjct: 120 NKVET--PQLSLD-AESFIKTGFTAPYF-ISARDGSGVADMLDDILESLP 165 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 80/167 (47%), Gaps = 13/167 (7%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +Q+ + +A+VG N GKS+ VN +G+ IV++ TTR + K+ + + + Sbjct: 171 LQEKESAIQLAVVGRPNVGKSSFVNSLLGSNRLIVSNIPGTTRDAIDSRFIRKQQEFILI 230 Query: 76 DTPGI-----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 DT G+ +A Y+ + + I+ D+ +++D+ ++ ++ +R Sbjct: 231 DTAGLRKRTKIDAGIEYYSSL--RTEKAIERCDVALVMLDAAPGIEKQDMKIINMAVERK 288 Query: 131 SRLILILNKIDCV----KPERLLEQAEIAN--KLVFIEKTFMVSATK 171 +L++NK D + K ++ E+ +N L ++ F+ + TK Sbjct: 289 KGALLLINKWDLIEKDSKTSKIYEETLRSNMGNLSYVPVLFISALTK 335 >gi|118443488|ref|YP_878327.1| GTP-binding protein EngA [Clostridium novyi NT] gi|166224330|sp|A0Q125|DER_CLONN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118133944|gb|ABK60988.1| GTP-binding protein engA [Clostridium novyi NT] Length = 438 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N+ G +++IV TR + + +DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAEAEWLNNNFTIIDTGGIEPEN 65 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R + I+ AD+V +VD + L ++ + K S ++L +NKID Sbjct: 66 DDIIVAQMRRQAQLAIEMADVVLFIVDGKQGLTDADREVAHMLRKASKSIVLAVNKID-- 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R L+ + + +SA++G G D+L+ + P Sbjct: 124 --RRQLDDNIYEFYNLGLGDPMPISASQGLGLGDLLDEVIEKFP 165 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+L+N+ +G + IV++ TTR V V +E + V +DT G+ Sbjct: 179 IAMIGRPNVGKSSLINKILGEEKHIVSNIPGTTRDAVDSYVETEEGKFVLIDTAGLRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++I++AD+ L++D+ ++ ++ + + +++I+NK D Sbjct: 239 KIKEQVERYSAVRTLASIENADVCILMIDATEDIAEQDERIIGYAHEINKAILVIVNKWD 298 Query: 142 CV-KPERLLE--QAEIANKLVFIEKT--FMVSATKGHGCDDVLN 180 + K ++ ++ + ++ KL F+ +SA G VL Sbjct: 299 LIEKDDKTMKNFKDKLRTKLSFLPYASFLFISAKTGQRVHKVLG 342 >gi|205829218|sp|A5F485|MNME_VIBC3 RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDG 304 >gi|15640035|ref|NP_062587.1| tRNA modification GTPase TrmE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153827657|ref|ZP_01980324.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2] gi|227080240|ref|YP_002808791.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae M66-2] gi|254851569|ref|ZP_05240919.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10] gi|298501189|ref|ZP_07010988.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757] gi|9654394|gb|AAF93181.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|149737870|gb|EDM52775.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2] gi|227008128|gb|ACP04340.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae M66-2] gi|254847274|gb|EET25688.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10] gi|297540061|gb|EFH76123.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757] Length = 464 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 229 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 288 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 289 DAVEKIGIERAWEEIRQADRVLFMVDG 315 >gi|257439162|ref|ZP_05614917.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii A2-165] gi|257198413|gb|EEU96697.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii A2-165] Length = 447 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 4/175 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ G +++IV TR + + + +DT GI A Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWSGHEFMLVDTGGIEPKA 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M + I AD + +VVD L ++ + + +IL +NK D Sbjct: 66 TEGILAHMREQAEIAIDTADCIIMVVDVRDGLTAADEEVAHMLRRSHKPIILAVNKCDKT 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 E +E E N + ++ +S+ GHG D+L+ +C+ L + V D+I Sbjct: 126 G-EAPMELYEFYN--LGFDEVLPISSVHGHGTGDLLDAVCAHLDFSETVVEEDRI 177 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+L NR +G IV ++ TTR + V + +F DT G+ Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N D + M+ + + ++ + + ++VD+ + ++ I+++NK D Sbjct: 239 NISDGLERYMVVRALAAVERSRVALILVDATVGFTEQDSKVAGYAHEQGKACIIVVNKWD 298 Query: 142 CVK 144 V+ Sbjct: 299 AVE 301 >gi|242255840|gb|ACS88904.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHKVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|227875339|ref|ZP_03993481.1| GTP-binding protein EngA [Mobiluncus mulieris ATCC 35243] gi|227844244|gb|EEJ54411.1| GTP-binding protein EngA [Mobiluncus mulieris ATCC 35243] Length = 517 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G +V++V + TR V +DT G Sbjct: 83 TVAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVG 142 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + + I+ AD+ VVD++ +++ + +IL+ NK+D Sbjct: 143 VKGLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDSE 202 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + + + N + + + + +SA G G ++L+ L LP Sbjct: 203 RAE--ADASGLWN--LGLGEPYPISALHGRGVGELLDVLLDALP 242 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N G+ S+V+ TTR V ++ + VF+DT GI Sbjct: 259 VALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIKRRI 318 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + S I+ A++ +++D L ++ + + L+L+ N Sbjct: 319 KQTVGADYYSVLRAQ---SAIESAEVALVLLDGGEPLSEQDVKVVNLVVESGRALVLVNN 375 Query: 139 KIDCVKPERLLE 150 K D V R E Sbjct: 376 KWDLVDEYRQQE 387 >gi|153212987|ref|ZP_01948581.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587] gi|124116213|gb|EAY35033.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587] Length = 464 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 229 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 288 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 289 DAVEKIGIERAWEEIRQADRVLFMVDG 315 >gi|122700681|emb|CAL87929.1| GTPase [Helicobacter pylori] gi|122700687|emb|CAL87932.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLNLNP 170 >gi|121730054|ref|ZP_01682463.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52] gi|147673066|ref|YP_001218408.1| tRNA modification GTPase TrmE [Vibrio cholerae O395] gi|254291135|ref|ZP_04961932.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae AM-19226] gi|121628203|gb|EAX60726.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52] gi|146314949|gb|ABQ19488.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395] gi|150422980|gb|EDN14930.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae AM-19226] gi|227011994|gb|ACP08204.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395] Length = 464 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 229 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 288 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 289 DAVEKIGIERAWEEIRQADRVLFMVDG 315 >gi|187924512|ref|YP_001896154.1| GTP-binding proten HflX [Burkholderia phytofirmans PsJN] gi|187715706|gb|ACD16930.1| GTP-binding proten HflX [Burkholderia phytofirmans PsJN] Length = 404 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 20/165 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFN 82 V+LVG TNAGKSTL N A+ T + R + + ++ Q+V DT G Sbjct: 206 SVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGDEAGQVVVSDTVGFI- 264 Query: 83 AKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILI 136 ++ H+L+ R + HAD++ VVD+ ++++ ++++L I + R +L+ Sbjct: 265 -RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNEVLHAIGADTIRQVLV 323 Query: 137 LNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID V PE +E+ E N I + F+ SA G G D Sbjct: 324 FNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 362 >gi|14195273|sp|Q9CLQ1|MNME_PASMU RecName: Full=tRNA modification GTPase mnmE Length = 452 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ ++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 199 DHVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 258 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +WS I+ AD + L++DS Sbjct: 259 IDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDS 303 >gi|258626075|ref|ZP_05720926.1| tRNA modification GTPase [Vibrio mimicus VM603] gi|258581601|gb|EEW06499.1| tRNA modification GTPase [Vibrio mimicus VM603] Length = 464 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 229 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 288 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 289 DAVEKIGIERAWEEIRQADRVLFMVDG 315 >gi|224498350|ref|ZP_03666699.1| tRNA modification GTPase TrmE [Listeria monocytogenes Finland 1988] Length = 457 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N+ + + +IVT TTR I+ V+ + + +DT G Sbjct: 217 REGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD + LV++ + EL L + A +++LNK Sbjct: 277 IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTAEDEALFE--AAAGHNYVVVLNK 334 Query: 140 IDC 142 D Sbjct: 335 TDL 337 >gi|171780272|ref|ZP_02921176.1| hypothetical protein STRINF_02060 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281620|gb|EDT47055.1| hypothetical protein STRINF_02060 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 437 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + +I R+++ +IL++NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVSKILYRTNKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + ++ E Q +DT G+ + Sbjct: 179 SLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRKSG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I +DIV +V+++ RE I E K +I+++N Sbjct: 239 KVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 295 Query: 139 KIDCVK 144 K D ++ Sbjct: 296 KWDTIE 301 >gi|326776154|ref|ZP_08235419.1| GTP-binding proten HflX [Streptomyces cf. griseus XylebKG-1] gi|326656487|gb|EGE41333.1| GTP-binding proten HflX [Streptomyces cf. griseus XylebKG-1] Length = 506 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 24/209 (11%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + ++ VA+ G TNAGKS+L+NR GA V + T V Sbjct: 264 EIAEMKTGREIKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 323 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 324 RRAETPSGRIYTLADTVGFVRHLPHHLVEAFRSTMEEVGESDLILHVVDGSHPVPEEQLA 383 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + ++++++ R I+++NK D P +RLL + A VSA G G Sbjct: 384 AVREVIRDVGAVDVREIVVINKADAADPLVLQRLLRNEKHA---------IAVSARTGAG 434 Query: 175 CDDVLNYLCSTLP--------LAPWVYSA 195 D++L + + LP L P++ A Sbjct: 435 IDELLALIDTELPRPSVEIEVLVPYIQGA 463 >gi|239500761|ref|ZP_04660071.1| GTP-binding protein EngA [Acinetobacter baumannii AB900] Length = 469 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + + +DT GI + Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGES 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPLQVAASHGRGVQQMLEDVLQDIP 163 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +A++G N GKSTLVNR +G + + TTR + + + +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGV 234 >gi|254439098|ref|ZP_05052592.1| GTP-binding proten HflX [Octadecabacter antarcticus 307] gi|198254544|gb|EDY78858.1| GTP-binding proten HflX [Octadecabacter antarcticus 307] Length = 430 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 16/172 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V + T +R + I+ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRLTGASVFVEDMLFATLDPTMRKVDLPNGDAIIMSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEI-AKRSSRLILILN 138 + R + + AD++ V D SH + K + D L+++ +I +LN Sbjct: 264 LPTQLVASFRATLEEVLEADVILHVRDISHPQSADQKKAVLDTLRQLDVNPDVPMIEVLN 323 Query: 139 KIDCVKPERLLEQAEIANKLVFI----EKTFMVSATKGHGCDDVLNYLCSTL 186 KID + PE A+ L + E F SA G G D +L+ + L Sbjct: 324 KIDLLAPED-------ADYLQALHKDGENVFGTSAVTGQGLDTLLDQITEKL 368 >gi|169797239|ref|YP_001715032.1| GTP-binding protein EngA [Acinetobacter baumannii AYE] gi|184156836|ref|YP_001845175.1| GTP-binding protein EngA [Acinetobacter baumannii ACICU] gi|215484680|ref|YP_002326915.1| small GTP-binding domain protein [Acinetobacter baumannii AB307-0294] gi|260556121|ref|ZP_05828340.1| ribosome-associated GTPase EngA [Acinetobacter baumannii ATCC 19606] gi|301509976|ref|ZP_07235213.1| GTP-binding protein EngA [Acinetobacter baumannii AB058] gi|332851256|ref|ZP_08433329.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013150] gi|332866125|ref|ZP_08436840.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013113] gi|332873250|ref|ZP_08441207.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6014059] gi|254783127|sp|B7H065|DER_ACIB3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783129|sp|B2I3F0|DER_ACIBC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783131|sp|B0V4V6|DER_ACIBY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783285|sp|A3M215|DER_ACIBT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169150166|emb|CAM88060.1| putative GTP-binding protein EngA [Acinetobacter baumannii AYE] gi|183208430|gb|ACC55828.1| predicted GTPase [Acinetobacter baumannii ACICU] gi|193076314|gb|ABO10959.2| putative GTP-binding protein EngA [Acinetobacter baumannii ATCC 17978] gi|213986103|gb|ACJ56402.1| small GTP-binding domain protein [Acinetobacter baumannii AB307-0294] gi|260410176|gb|EEX03475.1| ribosome-associated GTPase EngA [Acinetobacter baumannii ATCC 19606] gi|322506727|gb|ADX02181.1| engA [Acinetobacter baumannii 1656-2] gi|323516601|gb|ADX90982.1| GTP-binding protein EngA [Acinetobacter baumannii TCDC-AB0715] gi|332730136|gb|EGJ61463.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013150] gi|332734766|gb|EGJ65860.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013113] gi|332738762|gb|EGJ69632.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6014059] Length = 469 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + + +DT GI + Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGES 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPLQVAASHGRGVQQMLEDVLQDIP 163 Score = 36.2 bits (82), Expect = 5.8, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +A++G N GKSTLVNR +G + + TTR + + + +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGV 234 >gi|122702869|emb|CAL88624.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ ++ +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAVQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALDLNP 170 >gi|322386141|ref|ZP_08059775.1| ribosome-associated GTPase EngA [Streptococcus cristatus ATCC 51100] gi|321269833|gb|EFX52759.1| ribosome-associated GTPase EngA [Streptococcus cristatus ATCC 51100] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + EI + + F VS+ G G DVL+ + LP V + D I Sbjct: 123 NPEM---RNEIYDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPHEEVVENPDMI 175 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|320547399|ref|ZP_08041687.1| ribosome-associated GTPase EngA [Streptococcus equinus ATCC 9812] gi|320447944|gb|EFW88699.1| ribosome-associated GTPase EngA [Streptococcus equinus ATCC 9812] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + +I R+++ +IL++NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVSKILYRTNKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRSDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I +DIV +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTIE 300 >gi|306832031|ref|ZP_07465186.1| ribosome-associated GTPase EngA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425957|gb|EFM29074.1| ribosome-associated GTPase EngA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + +I R+++ +IL++NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVSKILYRTNKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRSDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIVENLPV 165 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I +DIV +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTIE 300 >gi|206578096|ref|YP_002241307.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae 342] gi|288937945|ref|YP_003442004.1| tRNA modification GTPase TrmE [Klebsiella variicola At-22] gi|290511686|ref|ZP_06551054.1| tRNA modification GTPase TrmE [Klebsiella sp. 1_1_55] gi|254811487|sp|B5XZP4|MNME_KLEP3 RecName: Full=tRNA modification GTPase mnmE gi|206567154|gb|ACI08930.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae 342] gi|288892654|gb|ADC60972.1| tRNA modification GTPase TrmE [Klebsiella variicola At-22] gi|289775476|gb|EFD83476.1| tRNA modification GTPase TrmE [Klebsiella sp. 1_1_55] Length = 454 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ +A D ++ I +W I+ AD V +VD Sbjct: 261 IDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDG 305 >gi|85059734|ref|YP_455436.1| GTP-binding protein EngA [Sodalis glossinidius str. 'morsitans'] gi|123519082|sp|Q2NS44|DER_SODGM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|84780254|dbj|BAE75031.1| putative GTP-binding protein [Sodalis glossinidius str. 'morsitans'] Length = 488 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + V +DT G+ Sbjct: 203 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRG 262 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++ +NK D Sbjct: 263 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIAVNKWD 322 Query: 142 CVKPERLLEQAE-IANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E E + ++L FI+ + +SA G G ++ Y C+T Sbjct: 323 GLSSETRDEVKEALDHRLGFIDFARVHFISALHGSGVGNLFESVNEAYQCAT 374 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 52/120 (43%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYCRAEWEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD L + + + R +++ NK D + Sbjct: 64 EEGVETRMAGQSLVAIEEADIVLFMVDGRAGLMAADKGIARHLRSREKTTVIVANKTDGI 123 >gi|325689629|gb|EGD31633.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK115] Length = 457 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ EL + L EI++ S+R++L LNK Sbjct: 281 IRETDDLVEQIGVERSKKALQEADLVLLVLNAS-ELLTDQDKQLLEISQDSNRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|324991285|gb|EGC23218.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK353] Length = 436 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + EI + + F VS+ G G DVL+ + LP V + D I Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLPNEEVVENPDMI 175 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|291615647|ref|YP_003518389.1| TrmE [Pantoea ananatis LMG 20103] gi|291150677|gb|ADD75261.1| TrmE [Pantoea ananatis LMG 20103] Length = 454 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 10/168 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+ AD V +VD ++ + R + ++ NK D Sbjct: 279 DEVERIGIERAWHEIEQADRVLFMVDGTTTDATEPAEIWPDFVARLPPQLPITVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 R L AN I +SA G D + ++L T+ A Sbjct: 339 ITGEARGLTN---ANGHALIR----LSARTSEGLDTLRDHLKQTMGFA 379 >gi|152990630|ref|YP_001356352.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2] gi|172048731|sp|A6Q3D6|MNME_NITSB RecName: Full=tRNA modification GTPase mnmE gi|151422491|dbj|BAF69995.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2] Length = 448 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N + + +IV+ TTR + V + F+DT GI A Sbjct: 221 VAIIGKPNTGKSSLLNALLDYERAIVSDIAGTTRDTIEESVRIGTHLVRFVDTAGIREAH 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK--EIAKRSSRLILILNKID 141 D+ K+ I S I+ +DIV + D+ + L +L+ E K I++ NK+D Sbjct: 281 DTIEKIGIERSIQAIEESDIVIAMFDASKPLDAEDKKILELIESYKDQKEFIVVANKVD 339 >gi|122701495|emb|CAL88137.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGV--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLNL 168 >gi|332873302|ref|ZP_08441257.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6014059] gi|332738508|gb|EGJ69380.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6014059] Length = 451 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 203 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 263 GLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 322 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 323 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAIIAH 373 Query: 186 LPLAP 190 P Sbjct: 374 AGFHP 378 >gi|229524906|ref|ZP_04414311.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv. albensis VL426] gi|229338487|gb|EEO03504.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv. albensis VL426] Length = 453 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDG 304 >gi|225873267|ref|YP_002754726.1| ribosome-associated GTPase EngA [Acidobacterium capsulatum ATCC 51196] gi|225793600|gb|ACO33690.1| ribosome-associated GTPase EngA [Acidobacterium capsulatum ATCC 51196] Length = 472 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 17/186 (9%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H ++ Q +R VA++G N GKSTL+N G+ +IV+ TTR V ++ Sbjct: 193 HGEYEQPETR---VAIIGRPNVGKSTLLNALTGSSRAIVSPIAGTTRDAVDEVIEHNGQT 249 Query: 72 IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + +DT GI +Y KL + ++ ++ AD+ LV+D+ + + + + Sbjct: 250 LRIVDTAGIRRKGKTYLMAEKLSVVMARRHLEAADVALLVIDATEGVTASDATIGGYAHE 309 Query: 129 RSSRLILILNKIDCV-------KP--ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDD 177 +I+++NK D V KP +R + + ++ + L ++ +SA +G + Sbjct: 310 SGRSVIIVVNKWDAVTTGRTDGKPPADRAIFEEQVRDHLKYLSYAPVIFISAAEGRNLNR 369 Query: 178 VLNYLC 183 +L+ + Sbjct: 370 ILDAVM 375 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 5/162 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKSTL NR ++ SIV + TR + G V +DT GI + Sbjct: 5 AIVGRPNVGKSTLFNRLTESRRSIVGDEPGITRDRIYGEVRWAGRTARLVDTGGIVPDDE 64 Query: 86 SYHKLMI-RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + I R + ++ A+ + +VVD EL DL + + + L L +NKID Sbjct: 65 ALIPAEIFRQARVALEEAEAIVMVVDGRTELAAPDLDLARLLLRTGKPLFLAVNKIDT-- 122 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +L AE +L I+ +SA GH D+L+ + + L Sbjct: 123 -PQLDASAENFRQL-GIQNLVAISAEHGHNVGDLLDEVFAVL 162 >gi|206579507|ref|YP_002237139.1| GTP-binding protein EngA [Klebsiella pneumoniae 342] gi|206568565|gb|ACI10341.1| GTP-binding protein EngA [Klebsiella pneumoniae 342] Length = 498 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 12/176 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 10 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 69 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 70 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANKTDGI 129 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ++QA + + + ++A+ G G +L L PWV D+IS Sbjct: 130 D----VDQAMADFWSLGLGDIYPIAASHGRGVTSLLEQA-----LLPWV---DEIS 173 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 213 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRG 272 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 273 KITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 332 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVL 179 + E + EQ + + +L FI+ + +SA G G ++ Sbjct: 333 GLSQE-VKEQVKETLDYRLGFIDFARVHFISALHGSGVGNLF 373 >gi|160872137|ref|ZP_02062269.1| GTP-binding protein EngA [Rickettsiella grylli] gi|159120936|gb|EDP46274.1| GTP-binding protein EngA [Rickettsiella grylli] Length = 455 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 6/183 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+NR +G + IV + TTR + + + +F+DT GI Sbjct: 200 VAIVGKPNVGKSTLLNRILGEERVIVFDQPGTTRDSIANDIEYRGQHYIFIDTAGIRRKS 259 Query: 85 DSYH---KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + S I+ + +V L++D+ + LL I + +I+ +NK D Sbjct: 260 KTWEAIDKFSVIKSLQAIEASHVVLLLIDAQEGISEQDLHLLGFILESGKAVIIAVNKWD 319 Query: 142 CV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + K +R + ++ +L FI + +SA G G + + A S Q+ Sbjct: 320 GLSKDQRDQIKKDLDRRLQFISFAQVIFISALHGTGVGHLFTLIRQAYQSATRNLSTSQL 379 Query: 199 SDL 201 + L Sbjct: 380 TRL 382 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 7/159 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV--RGIVSEKESQIVFLDTPGIF 81 + LVG N GKS+L NR + ++V TR + RGIV + + +DT G+ Sbjct: 16 SIVLVGRPNVGKSSLFNRLTKTRQALVGDIPGLTRDRLYGRGIVGNRP--FIVIDTGGLT 73 Query: 82 NAKDSYHKL-MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ M + + + IK AD V +VD+ L + L++++ + ++ L++NK Sbjct: 74 GCKEKNIAFQMEQQARNAIKEADHVLFLVDAREGLSLLDQQLIQQLRPFNKKITLVINKS 133 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + + + L Q+E + ++SA G+G ++ Sbjct: 134 EGL--DAALLQSEFSPLGFRTSSLSIISAIHGYGLQTLM 170 >gi|145220471|ref|YP_001131180.1| tRNA modification GTPase TrmE [Prosthecochloris vibrioformis DSM 265] gi|205415794|sp|A4SGR9|MNME_PROVI RecName: Full=tRNA modification GTPase mnmE gi|145206635|gb|ABP37678.1| tRNA modification GTPase trmE [Chlorobium phaeovibrioides DSM 265] Length = 473 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 12/179 (6%) Query: 23 GCVALV-GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 G A++ G NAGKSTL+N +G + +IV+H TTR + +++ DT G+ Sbjct: 230 GVAAVIAGRPNAGKSTLLNALLGHERAIVSHMPGTTRDYIEECFIHEKTMFRLTDTAGLR 289 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNK 139 ++ + IR S+ I AD++ ++DS +E+ +R SR+I++ NK Sbjct: 290 HSDEEVEHEGIRRSYRKISEADLMLYIIDSSEGDMQQEAAAARELRQRHPESRMIVVANK 349 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D + P+ A++ ++ ++A+KG G LN L ST +A V D++ Sbjct: 350 TD-LAPDAGGMIAQLQSETAC--PVIAMAASKGDG----LNELKST--MAGMVEGLDKL 399 >gi|323351499|ref|ZP_08087153.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis VMC66] gi|322121985|gb|EFX93711.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis VMC66] Length = 457 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI++ S+R++L LNK Sbjct: 281 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLL-EISQVSNRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|317132122|ref|YP_004091436.1| ribosome-associated GTPase EngA [Ethanoligenens harbinense YUAN-3] gi|315470101|gb|ADU26705.1| ribosome-associated GTPase EngA [Ethanoligenens harbinense YUAN-3] Length = 441 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 10/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N+ VG ++SIV TR + + DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLVGRRISIVEDTPGVTRDRIYAPCEWCGHTFLLADTGGIEMKS 65 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 D IR + + I AD++ + D + ++ + ++ +RS R ++L +NK D Sbjct: 66 DDVFLSGIREQAKAAIDTADVIIFMTDLRSGVTAQDNE-IADMLRRSHRPVVLCVNKADT 124 Query: 143 V--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + P + E + + F VS+ GHG D+L+++ LP Sbjct: 125 LGNTPSEVYEFYNLG-----LGDPFPVSSVHGHGTGDLLDHVVELLP 166 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G NAGKS+LVNR G + +V+ TTR V + + VF+DT GI Sbjct: 179 VAVIGKPNAGKSSLVNRIAGEERMLVSDIPGTTRDAVDTRIENEYGTFVFVDTAGIRRHS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSSRLILILN 138 +++ + + ++S ++ AD+ +++D+ E I E K S I+ +N Sbjct: 239 KVQEAVERYSVMRAFSAVERADVCVMMIDATTGFTEQDSKIAGYAHEQGKAS---IIAVN 295 Query: 139 KIDCVK 144 K D V+ Sbjct: 296 KWDLVE 301 >gi|295676897|ref|YP_003605421.1| GTP-binding proten HflX [Burkholderia sp. CCGE1002] gi|295436740|gb|ADG15910.1| GTP-binding proten HflX [Burkholderia sp. CCGE1002] Length = 404 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 20/165 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFN 82 V+LVG TNAGKSTL N A+ T + R + + ++ Q+V DT G Sbjct: 206 SVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGDEAGQVVVSDTVGFI- 264 Query: 83 AKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILI 136 ++ H+L+ R + HAD++ VVD+ ++++ ++++L I + R +L+ Sbjct: 265 -RELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNEVLHAIGADTIRQVLV 323 Query: 137 LNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID V PE +E+ E N I + F+ SA G G D Sbjct: 324 FNKIDAV-PELAARGDAVERDEYGN----ISRVFL-SARTGQGLD 362 >gi|121611908|ref|YP_999715.1| tRNA modification GTPase TrmE [Verminephrobacter eiseniae EF01-2] gi|205829187|sp|A1WSU0|MNME_VEREI RecName: Full=tRNA modification GTPase mnmE gi|121556548|gb|ABM60697.1| tRNA modification GTPase trmE [Verminephrobacter eiseniae EF01-2] Length = 490 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 14/154 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G+++ + V +R G V + G NAGKS+L+N GA+++IVT T Sbjct: 204 GQLSRLRQALGAVLQQARQGALLRDGIEVVIAGQPNAGKSSLLNALAGAELAIVTPVAGT 263 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V+ + + + +DT G+ + D ++ I SW + AD V + D R Sbjct: 264 TRDKVQQTIQIEGVPLRIIDTAGLRASDDEVERIGIARSWEAMAAADAVLFLHDLARAQT 323 Query: 117 VNIHDLLKEIAKRSSR-------LILILNKIDCV 143 EI + +R +I + NK+DCV Sbjct: 324 PKYIADDAEIERALARKLPPGVAVIDVWNKLDCV 357 >gi|67922416|ref|ZP_00515927.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] gi|67855760|gb|EAM51008.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] Length = 460 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + + +IVT TTR ++ + I LDT G Sbjct: 223 RNGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVIESQLVVGGIPIQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S AD+V L VD+ +++ + I R +IL++NK Sbjct: 283 IRQTTDQVEKIGVERSQLAASQADLVLLTVDATVVWSNQDNEIYQAIEHRP--VILVINK 340 Query: 140 IDCVKPE 146 ID P+ Sbjct: 341 IDLATPD 347 >gi|332637852|ref|ZP_08416715.1| GTP-binding protein Der [Weissella cibaria KACC 11862] Length = 436 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + + +DT GI A Sbjct: 5 VVAVVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTRAEWLTREFRLIDTGGIDMA 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + +++ + I AD++ +V + L + K + + ++L +NK+D + Sbjct: 65 DEPFMTQIVQQAEIAIDEADVIVFMVSAQEGLTEADERVAKILYRSKKPVVLAVNKVDNI 124 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 + ++EI F +S + G G D+L+ + S P Sbjct: 125 E-----MRSEIYEFYALGFGDPFPISGSHGTGLGDLLDQVVSHFP 164 Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGI---F 81 + +G N GKS+LVN +G + IV+ TTR +I S + V +DT GI Sbjct: 178 SFIGRPNVGKSSLVNAILGEERVIVSDISGTTRDAIDTRFTSADGDEFVMVDTAGIRKRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I +++V +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIDDSNVVLMVLNAEEGIREQDKHVAGYAHEAGRAIIIVVNKWD 297 Query: 142 CVK 144 ++ Sbjct: 298 TLE 300 >gi|297618522|ref|YP_003703681.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM 12680] gi|297146359|gb|ADI03116.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM 12680] Length = 460 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G N GKS+L+N + K +IVT TTR IV ++ K + +DT GI Sbjct: 224 VVIAGKPNVGKSSLLNALLRKKKAIVTDIPGTTRDIVEDYINVKGIPVNIMDTAGIRETG 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ + S I ADI+ V+D+ + + K +A R R+I+++NK D + Sbjct: 284 DLVERIGVERSEEVISEADIILAVLDAGAGISEEDERVAKMVAGR--RVIVLVNKEDLEE 341 Query: 145 PERLLEQAE 153 LE+ E Sbjct: 342 KRVTLEEVE 350 >gi|269215396|ref|ZP_06159250.1| ribosome-associated GTPase EngA [Slackia exigua ATCC 700122] gi|269130883|gb|EEZ61958.1| ribosome-associated GTPase EngA [Slackia exigua ATCC 700122] Length = 440 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G NAGKS+L NR +G + SIV+ TTR + + + + +DT G+ Sbjct: 183 VAIIGRPNAGKSSLTNRLIGKERSIVSDVAGTTRDAIDTTIEHEGTFYTIVDTAGLRRKA 242 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D + +R + I AD+ LVVD+ L + +R L ++LNK Sbjct: 243 QIDQDVEYYGFVR-AMRAIDRADVALLVVDATLGLTDQDQRVAGYAHERGCALAILLNKR 301 Query: 141 DCVKPERLLE--QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYL 182 D V+ L + +I ++ F++ +SA G D + N + Sbjct: 302 DAVESGDTLNALREDIEERMNFVKYAPVLSISALTGKSVDRIWNMI 347 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 7/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST VNR +IV TR +DT GI Sbjct: 8 VAVVGRPNVGKSTFVNRITHGNDAIVHEMRGVTRDRSYHEAEWSGVHFTLVDTGGIEMGD 67 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + IR ++ + AD + +VD + + + + + K S + L +NK+D Sbjct: 68 DDVFQGSIREQAFVGAEEADAIVFIVDGKTGIAADDDAVARILRKTSKPVFLTVNKMDNP 127 Query: 144 KPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E + E ++ + + +S+ GHG D+L+ + + Sbjct: 128 ADESAMWEFYQLG-----LGDPWPISSEHGHGTGDLLDAVIDVI 166 >gi|94986558|ref|YP_594491.1| GTP-binding protein EngA [Lawsonia intracellularis PHE/MN1-00] gi|166225821|sp|Q1MS56|DER_LAWIP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94730807|emb|CAJ54169.1| predicted GTPases [Lawsonia intracellularis PHE/MN1-00] Length = 453 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 15/197 (7%) Query: 4 GEITFFNEHKDFVQDNSRSGC---VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 E++ + + ++D S + +A++G NAGKS+++N +G IV++ TTR Sbjct: 168 NELSLLLPNNENIKDQSTAQAALKLAIIGRPNAGKSSIINAIIGKNKLIVSNIAGTTRDS 227 Query: 61 VRGIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV 117 + ++Q +F+DT GI D + + S + A+I V+D+ + Sbjct: 228 IDIPFIFNKTQYLFVDTAGIRRRTKITDPVERFSVNASIKSATKANITLYVIDATEGITA 287 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHG 174 LL + R IL++NK D + K ++ L +L F MVSA G Sbjct: 288 QDKRLLDLLDTRKIPFILLINKTDLIAKKQKTLLSKSFKEELQFCPHIPILMVSAVTSSG 347 Query: 175 CDDVLN-----YL-CST 185 D ++ YL CST Sbjct: 348 LDQIIAMAEQVYLECST 364 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 16/175 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV-SEKESQIVFLDTPGI--- 80 +ALVG N GKSTL NR + +I + TR + G+V S + +DT G+ Sbjct: 5 IALVGRPNVGKSTLFNRLIRKNRAITHDRPGVTRDRMEGLVQSIGHPSFILIDTGGVILD 64 Query: 81 -----FNAKDSYH---KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 N D H K + + I+ + +CL+V++ L L + K Sbjct: 65 SHYSTINIIDELHGFEKDIFQQVQLAIEESQAICLIVNARDGLLPFDEHLALFLRKTGKP 124 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++L +NK+D ++ E + +A + VSA GH + N L LP Sbjct: 125 ILLAVNKVDGIEKEDQI----VAEFHILGLPMIAVSAEHGHNIRQLENELSLLLP 175 >gi|306818602|ref|ZP_07452325.1| ribosome-associated GTPase EngA [Mobiluncus mulieris ATCC 35239] gi|304648775|gb|EFM46077.1| ribosome-associated GTPase EngA [Mobiluncus mulieris ATCC 35239] Length = 526 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G +V++V + TR V +DT G Sbjct: 92 TVAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVG 151 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + + I+ AD+ VVD++ +++ + +IL+ NK+D Sbjct: 152 VKGLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDSE 211 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + + + N + + + + +SA G G ++L+ L LP Sbjct: 212 RAE--ADASGLWN--LGLGEPYPISALHGRGVGELLDVLLDALP 251 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N G+ S+V+ TTR V ++ + VF+DT GI Sbjct: 268 VALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIKRRI 327 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + S I+ A++ +++D L ++ + + L+L+ N Sbjct: 328 KQTVGADYYSVLRAQ---SAIESAEVALVLLDGGEPLSEQDVKVVNLVVESGRALVLVNN 384 Query: 139 KIDCVKPERLLE 150 K D V R E Sbjct: 385 KWDLVDEYRQQE 396 >gi|262167093|ref|ZP_06034808.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC27] gi|262024479|gb|EEY43165.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC27] Length = 453 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDG 304 >gi|94676628|ref|YP_588606.1| tRNA modification GTPase TrmE [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166200469|sp|Q1LTV8|MNME_BAUCH RecName: Full=tRNA modification GTPase mnmE gi|94219778|gb|ABF13937.1| tRNA modification GTPase TrmE [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 457 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 + + G N GKS+++N G +V+IVT+ TTR I+R + + +DT G+ N + Sbjct: 221 IVITGKPNVGKSSIINALAGHEVAIVTNIAGTTRDILREYIYLDGIPVSIIDTAGLCNVS 280 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + K+ I+ +W+ IK AD + LVVDS Sbjct: 281 HNEVEKIGIQRAWNEIKQADHILLVVDS 308 >gi|269302630|gb|ACZ32730.1| putative GTP-binding protein Era [Chlamydophila pneumoniae LPCoLN] Length = 485 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 3/127 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+++N + + I+ + TTR + + S K+ Q +F+DT G+ Sbjct: 225 IALIGRPNVGKSSIINGLLNEERCIIDNTPGTTRDNIDILYSHKDRQYLFIDTAGLRKMK 284 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+S + + I ADI LV+D+ ++L +L I+KR I+++NK D Sbjct: 285 SVKNSIEWISSSRTEKAISRADICLLVIDATQKLSSYEKRILSLISKRKKPHIILINKWD 344 Query: 142 CVKPERL 148 ++ R+ Sbjct: 345 LLEEVRM 351 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A++G N GKS+L NR ++IV + TTR + G + +DT G+ N+ Sbjct: 4 IAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDHNS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD 110 +D + K + + + K AD++ LV+D Sbjct: 64 EDYFQKHIYNQALTGAKEADVLLLVID 90 >gi|221194359|ref|ZP_03567416.1| ribosome-associated GTPase EngA [Atopobium rimae ATCC 49626] gi|221185263|gb|EEE17653.1| ribosome-associated GTPase EngA [Atopobium rimae ATCC 49626] Length = 440 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 9/136 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR G K SIV++ TTR + ++ K+ I +DT G+ Sbjct: 181 LAIIGRPNVGKSSLANRLAGKKRSIVSNVAGTTRDAIDTMIMWKDQPICLVDTAGMRQKS 240 Query: 85 D-----SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 Y+ L+ L + AD+ LV+D+ + L +R L+ +LNK Sbjct: 241 KVHEDVEYYSLLRGL--RAMDRADVCLLVIDATVGVTEQDQKLANMAVERGCALVGLLNK 298 Query: 140 IDCVKPERLLEQAEIA 155 D + E +QAE++ Sbjct: 299 WDLIDTEE--KQAEVS 312 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 VA+VG N GKSTLVNR + +IV TR + +DT GI Sbjct: 6 VAVVGRPNVGKSTLVNRLAQRREAIVHESRGVTRDRSYHDADWNGREFCLIDTGGIESVK 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILILN 138 +KD + + + + AD++ VVD K I D +E+A +RS + + L++N Sbjct: 66 SKDQFAPHIREQALLACEEADVIVFVVDG----KTGITDEDEEVARIVRRSDKPVFLVVN 121 Query: 139 KIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 K D PE EQ + + + + +SA+ G G D+L+ + + LP Sbjct: 122 KKDS--PE--TEQDGLWDFYALGVGEPLPISASHGIGTGDLLDGIVAELP 167 >gi|297581962|ref|ZP_06943882.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385] gi|297533829|gb|EFH72670.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385] Length = 464 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 229 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 288 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 289 DAVEKIGIERAWEEIRQADRVLFMVDG 315 >gi|145593996|ref|YP_001158293.1| GTP-binding protein, HSR1-related [Salinispora tropica CNB-440] gi|145303333|gb|ABP53915.1| GTP-binding protein, HSR1-related [Salinispora tropica CNB-440] Length = 494 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+N+ GA V + T +R + F DT G Sbjct: 256 AVAIAGYTNAGKSSLLNQLTGAGVLVENALFATLDPTIRKATTSDGRNFTFSDTVGFV-- 313 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H+++ R + + AD+V VVD E + +L E+ +L++ Sbjct: 314 RHLPHQIVEAFRSTLEEVAEADLVVHVVDGTHPDPEEQVRAVRAVLAEVGADRLPELLVV 373 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D E LL + + +F VSA G+G DD+ + + LP Sbjct: 374 NKTDAAGEETLLRLKRLWPEAIF------VSAHSGYGVDDLRRSVEARLP 417 >gi|15603031|ref|NP_246103.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp. multocida str. Pm70] gi|12721514|gb|AAK03250.1| ThdF [Pasteurella multocida subsp. multocida str. Pm70] Length = 465 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ ++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 212 DHVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 271 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +WS I+ AD + L++DS Sbjct: 272 IDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDS 316 >gi|312277722|gb|ADQ62379.1| GTP-binding protein engA [Streptococcus thermophilus ND03] Length = 436 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAGIAMTEADVIVFVV-SGKEGVTDADEYVARILYKTNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +A+I + + + VS+ G G DVL+ + LP Sbjct: 123 -NPEM---RADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR +I V + + +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K I S I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSIMRSMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D +K Sbjct: 295 KWDTIK 300 >gi|269978226|ref|ZP_06185176.1| ribosome-associated GTPase EngA [Mobiluncus mulieris 28-1] gi|269933735|gb|EEZ90319.1| ribosome-associated GTPase EngA [Mobiluncus mulieris 28-1] Length = 547 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G +V++V + TR V +DT G Sbjct: 113 TVAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVG 172 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + + I+ AD+ VVD++ +++ + +IL+ NK+D Sbjct: 173 VKGLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDSE 232 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + + + N + + + + +SA G G ++L+ L LP Sbjct: 233 RAE--ADASGLWN--LGLGEPYPISALHGRGVGELLDVLLDALP 272 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N G+ S+V+ TTR V ++ + VF+DT GI Sbjct: 289 VALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIKRRI 348 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + S I+ A++ +++D L ++ + + L+L+ N Sbjct: 349 KQTVGADYYSVLRAQ---SAIESAEVALVLLDGGEPLSEQDVKVVNLVVESGRALVLVNN 405 Query: 139 KIDCVKPER 147 K D V R Sbjct: 406 KWDLVDEYR 414 >gi|258622951|ref|ZP_05717966.1| tRNA modification GTPase [Vibrio mimicus VM573] gi|258584734|gb|EEW09468.1| tRNA modification GTPase [Vibrio mimicus VM573] Length = 464 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 229 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 288 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 289 DAVEKIGIERAWEEIRQADRVLFMVDG 315 >gi|116627238|ref|YP_819857.1| GTP-binding protein EngA [Streptococcus thermophilus LMD-9] gi|122268159|sp|Q03MB1|DER_STRTD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116100515|gb|ABJ65661.1| Predicted GTPase [Streptococcus thermophilus LMD-9] Length = 436 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAGIAMTEADVIVFVV-SGKEGVTDADEYVARILYKTNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +A+I + + + VS+ G G DVL+ + LP Sbjct: 123 -NPEM---RADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR +I V + + +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRSMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D +K Sbjct: 295 KWDTIK 300 >gi|168186800|ref|ZP_02621435.1| GTP-binding protein EngA [Clostridium botulinum C str. Eklund] gi|169295122|gb|EDS77255.1| GTP-binding protein EngA [Clostridium botulinum C str. Eklund] Length = 438 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N+ G +++IV TR + + +DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAEAEWLNNNFTIIDTGGIEPEN 65 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R + I+ AD+V +VD + L ++ + K + ++L +NKID Sbjct: 66 DDIIVAQMRRQAQLAIEMADVVLFIVDGKQGLTDADREVAHMLRKANKSIVLAVNKID-- 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R L+ + + + +SA++G G D+L+ + P Sbjct: 124 --RRQLDDNIYEFYNLGLGEPMPISASQGLGLGDLLDEVVGKFP 165 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 69/125 (55%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+L+NR +G + IV++ TTR V + +E + V +DT G+ Sbjct: 179 IAMIGRPNVGKSSLINRILGEEKHIVSNIPGTTRDAVDSYIETEEGKFVLIDTAGLRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++I++AD+ L++D+ ++ ++ + + +++I+NK D Sbjct: 239 KIKEQVERYSAVRTLASIENADVCILMIDATEDIAEQDERIIGYAHEINKAIVVIVNKWD 298 Query: 142 CVKPE 146 ++ + Sbjct: 299 LIEKD 303 >gi|270717108|ref|ZP_06223233.1| conserved hypothetical protein [Haemophilus influenzae HK1212] gi|270315556|gb|EFA27772.1| conserved hypothetical protein [Haemophilus influenzae HK1212] Length = 155 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 39 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 98 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD + L++DS Sbjct: 99 DEVERIGISRAWTEIEQADRIILMLDS 125 >gi|153852706|ref|ZP_01994143.1| hypothetical protein DORLON_00125 [Dorea longicatena DSM 13814] gi|149754348|gb|EDM64279.1| hypothetical protein DORLON_00125 [Dorea longicatena DSM 13814] Length = 410 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+L+N G ++IV+ + TT + + + IV +DTPG+ + Sbjct: 14 IGIFGRRNAGKSSLINALTGQNLAIVSDVRGTTTDPVFKSMELLPLGPIVMIDTPGL-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + KL I+ ++ + DI LV+D + + +L I ++ L+L+LNK D V Sbjct: 73 EGELGKLRIQKAYQVLNKTDIAVLVIDGTSGITPQDNAILTRIQDKNIPLLLVLNKADLV 132 >gi|319938848|ref|ZP_08013212.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV] gi|319811898|gb|EFW08164.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV] Length = 457 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D ++ + S ++ AD+V LV+++ L LL EI++ ++R IL+LNK Sbjct: 281 IRDTDDIVEQIGVERSKKALQDADLVLLVLNASEPLTEQDRKLL-EISQDTNR-ILLLNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|312879308|ref|ZP_07739108.1| tRNA modification GTPase TrmE [Aminomonas paucivorans DSM 12260] gi|310782599|gb|EFQ22997.1| tRNA modification GTPase TrmE [Aminomonas paucivorans DSM 12260] Length = 472 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 4/128 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L+N + +IVT TTR +V + + + + +DT GI ++ Sbjct: 240 VGLVGRPNVGKSSLLNALLQEARAIVTPLPGTTRDLVEAVTTHRGVPLRLVDTAGIRSSA 299 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D L I+ + T++ AD+ VVD+ L +L + R L++ NK D Sbjct: 300 DPLEALGIQRARRTLEEADLRVWVVDAGEPLTEEDRELAASL--RGKTLLVARNKTDL-- 355 Query: 145 PERLLEQA 152 PE + E A Sbjct: 356 PEAVSEAA 363 >gi|299148912|ref|ZP_07041974.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_23] gi|298513673|gb|EFI37560.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_23] Length = 465 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VD+ I L ++I R LI++ NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDAVNAAS-QIEQLSEKIIPRCEGKHLIVVFNKTDL 341 Query: 143 VKPER 147 ++ ++ Sbjct: 342 IEDKQ 346 >gi|91205027|ref|YP_537382.1| GTP-binding protein EngA [Rickettsia bellii RML369-C] gi|122426010|sp|Q1RK21|DER_RICBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91068571|gb|ABE04293.1| GTP-binding protein [Rickettsia bellii RML369-C] Length = 452 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 LVG N GKSTL NR K +IV V R G + E ++ DTPG+ Sbjct: 13 LVGRPNVGKSTLFNRLSMRKKAIVHDLPGVTRDRKYTDGRIGSFEFSLI--DTPGLEENP 70 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 DS+ K ++ + I AD++C +VDS + + L + K + +L++NK C Sbjct: 71 DSFGKRLMEQTTKAINEADLICFMVDSRSGILPDDKLLSDFVRKYNKPAVLVINK--C-- 126 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 127 -EKAFDFDKEYYKLGF-DSMVAISAEHGTGMIDLYDEIIAKLP 167 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D + C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 176 IHDPIKGDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKGNHIK 235 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S KL + ++IK A+ V L++D+ LK ++ +A Sbjct: 236 LIDTAGLRKKATITESLEKLSASDAINSIKFANTVILMIDALSPLKQQDLNIASHVANEG 295 Query: 131 SRLILILNKIDCVK 144 +++++NK D +K Sbjct: 296 RSIVIVVNKWDLIK 309 >gi|319779671|ref|YP_004130584.1| GTP-binding protein EngA [Taylorella equigenitalis MCE9] gi|317109695|gb|ADU92441.1| GTP-binding protein EngA [Taylorella equigenitalis MCE9] Length = 452 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR ++ +IV TR G + + +DT G Sbjct: 6 VIALVGRPNVGKSTLFNRLTRSRNAIVADYSGLTRDRHYGEGRIGDRPFLVIDTGGFEPK 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K K M R + I +D+V +VD+ + HD+ ++ K ++L +NK + Sbjct: 66 VKTGILKEMARQTELAISESDVVIFLVDARSGINAQDHDIATKLRKVGVPVLLAVNKAEG 125 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++P QA + + + +S+ G G ++++ S +P Sbjct: 126 LQP----NQANAEFHELGLGEPLAISSAHGDGVANLIDIALSKIP 166 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N +G + I TTR + + +DT G+ Sbjct: 189 LAIVGRPNVGKSTLINSLIGEQRVIAFDLPGTTRDAIEIDFEHNNKKYKLIDTAGLRKRG 248 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ ++V LV+D+ E+ + I + L++ +NK D Sbjct: 249 RVFESIEKFSVIKTLQAIEACNVVVLVLDAQSEISEQDAHIAGFILESGRALVVAINKWD 308 Query: 142 CVKPER---LLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + ++ ++ + E + + K +SA K G +L Sbjct: 309 GLDEDKRDWVIREFERKLRFLSFAKVHFISALKSQGIKSLL 349 >gi|293391846|ref|ZP_06636180.1| tRNA modification GTPase TrmE [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952380|gb|EFE02499.1| tRNA modification GTPase TrmE [Aggregatibacter actinomycetemcomitans D7S-1] Length = 451 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 49/87 (56%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 217 VVIAGRPNAGKSSLLNTLAGREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD + L++DS Sbjct: 277 DEVERIGISRAWHEIEQADRILLMLDS 303 >gi|262040470|ref|ZP_06013713.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042223|gb|EEW43251.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 454 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ +A D ++ I +W I AD V +VD Sbjct: 261 IDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQADRVLFMVDG 305 >gi|221504233|gb|EEE29908.1| GTPase mss1/trme, putative [Toxoplasma gondii VEG] Length = 1151 Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA+VG N GKS L+NR +G S+V+ + TTR V +V +DT GI Sbjct: 877 VAIVGRPNVGKSQLLNRLLGVSRSLVSPQAGTTRDAVDELVQRDGRLYRLVDTAGIRRAR 936 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 A+ +M++ + + D+ LV D+ R L L K+I + ++++NK Sbjct: 937 VVKAQKGVEFVMVKRAERALARCDVCLLVCDAERGLVKQDILLAKKIEEEGRAAVIVMNK 996 Query: 140 IDCVKPE 146 D V E Sbjct: 997 WDTVDAE 1003 >gi|237843971|ref|XP_002371283.1| GTP-binding protein EngA , putative [Toxoplasma gondii ME49] gi|211968947|gb|EEB04143.1| GTP-binding protein EngA , putative [Toxoplasma gondii ME49] gi|221483760|gb|EEE22072.1| hypothetical protein TGGT1_123310 [Toxoplasma gondii GT1] Length = 1146 Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA+VG N GKS L+NR +G S+V+ + TTR V +V +DT GI Sbjct: 872 VAIVGRPNVGKSQLLNRLLGVSRSLVSPQAGTTRDAVDELVQRDGRLYRLVDTAGIRRAR 931 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 A+ +M++ + + D+ LV D+ R L L K+I + ++++NK Sbjct: 932 VVKAQKGVEFVMVKRAERALARCDVCLLVCDAERGLVKQDILLAKKIEEEGRAAVIVMNK 991 Query: 140 IDCVKPE 146 D V E Sbjct: 992 WDTVDAE 998 >gi|169832370|ref|YP_001718352.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator MP104C] gi|205829147|sp|B1I6S2|MNME_DESAP RecName: Full=tRNA modification GTPase mnmE gi|169639214|gb|ACA60720.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator MP104C] Length = 461 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N + K +IVT TTR ++ V+ + + LDT G+ Sbjct: 226 VAIVGKPNVGKSSLLNALLREKRAIVTDVPGTTRDVIEETVNIRGLPVRLLDTAGLRETA 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ +L + + + AD+V +V+D+ L+ +L R L++++NK+D Sbjct: 286 DTVERLGVARTRDAVAGADMVLVVLDAASGLEDEDRRVLA--LARGKPLVVLINKVD 340 >gi|119475232|ref|ZP_01615585.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143] gi|119451435|gb|EAW32668.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143] Length = 465 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ ++ Sbjct: 226 TVVIAGKPNAGKSSLLNALSGRDSAIVTEIEGTTRDVLREHIQIDGMPLHIIDTAGLRDS 285 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRL---ILI 136 D + IR +W I AD + LVVDS +++ I DL +I+ + S L ++ Sbjct: 286 PDIIEQEGIRRAWEEINRADRILLVVDSTTSREIDPVKLIGDLGPDISSKLSSLANVTIV 345 Query: 137 LNKID 141 NK D Sbjct: 346 HNKAD 350 >gi|90413741|ref|ZP_01221729.1| tRNA modification GTPase [Photobacterium profundum 3TCK] gi|90325210|gb|EAS41707.1| tRNA modification GTPase [Photobacterium profundum 3TCK] Length = 455 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 14/163 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+ AD V +VD + D+ + +R S L +I NK++ Sbjct: 280 DEVERIGIERAWEEIQQADRVLFMVDGTTTNDTDPKDIWPDFIERLPASMGLTVIRNKVE 339 Query: 142 CVKPERLLEQAEI--ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E A I N + +SA G G D + +L Sbjct: 340 LTG-----EAAGICHVNNPTLVR----LSALTGEGVDSLREHL 373 >gi|15618753|ref|NP_225039.1| GTP-binding protein EngA [Chlamydophila pneumoniae CWL029] gi|15836377|ref|NP_300901.1| GTP-binding protein EngA [Chlamydophila pneumoniae J138] gi|16752195|ref|NP_445562.1| GTP-binding protein EngA [Chlamydophila pneumoniae AR39] gi|33242204|ref|NP_877145.1| GTP-binding protein EngA [Chlamydophila pneumoniae TW-183] gi|8134434|sp|Q9Z762|DER_CHLPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|4377159|gb|AAD18982.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae CWL029] gi|7189939|gb|AAF38801.1| GTP-binding protein [Chlamydophila pneumoniae AR39] gi|8979218|dbj|BAA99052.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae J138] gi|33236715|gb|AAP98802.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae TW-183] Length = 487 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 3/127 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+++N + + I+ + TTR + + S K+ Q +F+DT G+ Sbjct: 227 IALIGRPNVGKSSIINGLLNEERCIIDNTPGTTRDNIDILYSHKDRQYLFIDTAGLRKMK 286 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+S + + I ADI LV+D+ ++L +L I+KR I+++NK D Sbjct: 287 SVKNSIEWISSSRTEKAISRADICLLVIDATQKLSSYEKRILSLISKRKKPHIILINKWD 346 Query: 142 CVKPERL 148 ++ R+ Sbjct: 347 LLEEVRM 353 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A++G N GKS+L NR ++IV + TTR + G + +DT G+ N+ Sbjct: 4 IAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDHNS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD 110 +D + K + + + K AD++ LV+D Sbjct: 64 EDYFQKHIYNQALTGAKEADVLLLVID 90 >gi|268593483|ref|ZP_06127704.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131] gi|291310904|gb|EFE51357.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131] Length = 454 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VDS Sbjct: 279 DEVERIGIERAWKEIEQADHVLFMVDS 305 >gi|332711902|ref|ZP_08431832.1| ribosome-associated GTPase EngA [Lyngbya majuscula 3L] gi|332349230|gb|EGJ28840.1| ribosome-associated GTPase EngA [Lyngbya majuscula 3L] Length = 463 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-------ESQIV-FLD 76 VA+VG N GKS+L+N G SIV+ TTR + +V E+Q +D Sbjct: 179 VAIVGRPNVGKSSLLNTLTGENRSIVSPISGTTRDAIDMVVQRSADPEKGTEAQTYRLID 238 Query: 77 TPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T GI K+ + I ++ I+ +D+V LV+D+ + L IA Sbjct: 239 TAGIRKKKNVTYGPEFFGINRAFKAIRRSDVVLLVIDAIDGVTEQDQKLAGRIADEGRAA 298 Query: 134 ILILNKIDCVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 ++++NK D ++ + Q ++ ++L FIE + VSA G + +L+ Sbjct: 299 VIVVNKWDAIEKDSYTIYDYQKQVKDRLSFIEWAEIIFVSAMTGKRVETILD 350 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 10/180 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFN 82 VA++G N GKSTLVNR G +IV ++ TR ++ + +DT G +F+ Sbjct: 5 IVAVIGRPNVGKSTLVNRLAGVTDAIVHNQPGVTRDRTYRAAFWQDRDYLVVDTGGLVFD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + L+ + + + A LVVD + + + +++ ++L +NK C Sbjct: 65 DNTEFLPLIREQAMAALAEASAAVLVVDGQAGPTAGDEAIAQWLRIQNTPVVLAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 P++ + A +L E F VSA G+G ++L L + LP + D I ++P Sbjct: 123 ESPQQGIILASQFWELNLGEP-FPVSAIHGNGTGELLEKLVTYLP------NVDNIPEIP 175 >gi|300727852|ref|ZP_07061232.1| tRNA modification GTPase TrmE [Prevotella bryantii B14] gi|299774900|gb|EFI71512.1| tRNA modification GTPase TrmE [Prevotella bryantii B14] Length = 454 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 71/124 (57%), Gaps = 8/124 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TN GKSTL+N+ + + +IV+ TTR ++ + F+DT GI + Sbjct: 222 VAIIGKTNVGKSTLLNQLLHEEKAIVSDIDGTTRDVIEDTIDIHGVNFRFIDTAGIRQTE 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D ++ I+ ++ ++ A IV ++D+ +E ++I + KE ++I++ NK+D Sbjct: 282 DKVEQIGIKRAYQKLEEATIVLWILDNQPSKEEVLDIQNRTKE-----KQVIILSNKMD- 335 Query: 143 VKPE 146 +KP+ Sbjct: 336 IKPQ 339 >gi|251791873|ref|YP_003006593.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700] gi|247533260|gb|ACS96506.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700] Length = 451 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLREAT 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +WS I+ AD + L++D Sbjct: 277 DEVERIGISRAWSEIEQADRILLMLDG 303 >gi|218661703|ref|ZP_03517633.1| GTP-binding protein [Rhizobium etli IE4771] Length = 285 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 33/197 (16%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 48 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 107 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK-------EIAKRSSRLIL 135 ++ R + + AD++ V D S + + D+++ + A+ RLI Sbjct: 108 LPTHLVAAFRATLEEVLEADLILHVRDMSDDDNQAQSSDVMRILGDLGIDEAEAEKRLIE 167 Query: 136 ILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC--------- 183 + NKID ++PE ++++A A+ +V VSA G G D +++ + Sbjct: 168 VWNKIDRLEPEVHDAMVQKASGASNVV------AVSAVSGEGVDSLMDEISRRLSGVMTE 221 Query: 184 -------STLPLAPWVY 193 L L PW+Y Sbjct: 222 TTIRLPVDKLALLPWLY 238 >gi|116493570|ref|YP_805305.1| tRNA modification GTPase TrmE [Pediococcus pentosaceus ATCC 25745] gi|122264966|sp|Q03D59|MNME_PEDPA RecName: Full=tRNA modification GTPase mnmE gi|116103720|gb|ABJ68863.1| tRNA modification GTPase trmE [Pediococcus pentosaceus ATCC 25745] Length = 464 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 223 RDGLATAIIGHPNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD+V LV+DS L+ +LL+E + I++LNK Sbjct: 283 IHETEDKVEKIGVDRSRKALSQADLVILVLDSSVPLRDEDRELLRE--TNHMQRIVVLNK 340 Query: 140 IDC 142 D Sbjct: 341 SDL 343 >gi|283797196|ref|ZP_06346349.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1] gi|291075154|gb|EFE12518.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1] gi|295090272|emb|CBK76379.1| tRNA modification GTPase trmE [Clostridium cf. saccharolyticum K10] gi|295115469|emb|CBL36316.1| tRNA modification GTPase trmE [butyrate-producing bacterium SM4/1] Length = 458 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G NAGKS+L+N VG + +IVT TTR + + + +DT G Sbjct: 219 REGVKTVILGKPNAGKSSLMNVLVGEERAIVTDVAGTTRDTLEENIRLHGISLNIIDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + + AD++ VVD R L N ++++ I R + I++LNK Sbjct: 279 IRDTDDIVEKIGVDKARQIADDADLIIYVVDGSRPLDENDREIMELI--RGRKAIVLLNK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D E L+ + E+ + + VSA + G D Sbjct: 337 TDL---EMLVTEKELEERTG--QTVIPVSAKEQKGID 368 >gi|153807730|ref|ZP_01960398.1| hypothetical protein BACCAC_02012 [Bacteroides caccae ATCC 43185] gi|149129339|gb|EDM20553.1| hypothetical protein BACCAC_02012 [Bacteroides caccae ATCC 43185] Length = 465 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ ++ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEERAIVSDIHGTTRDVIEDTINIGGVTFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV ++DS I L ++I R LI + NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMIDSVNAAS-QIEQLSEKIIPRCEGKHLIAVFNKADL 341 Query: 143 VKPER 147 ++ ++ Sbjct: 342 IEEKQ 346 >gi|307700914|ref|ZP_07637939.1| ribosome-associated GTPase EngA [Mobiluncus mulieris FB024-16] gi|307613909|gb|EFN93153.1| ribosome-associated GTPase EngA [Mobiluncus mulieris FB024-16] Length = 524 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G +V++V + TR V +DT G Sbjct: 90 TVAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVG 149 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + + I+ AD+ VVD++ +++ + +IL+ NK+D Sbjct: 150 VKGLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDSE 209 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + + + N + + + + +SA G G ++L+ L LP Sbjct: 210 RAE--ADASGLWN--LGLGEPYPISALHGRGVGELLDVLLDALP 249 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N G+ S+V+ TTR V ++ + VF+DT GI Sbjct: 266 VALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIKRRI 325 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + S I+ A++ +++D L ++ + + L+L+ N Sbjct: 326 KQTVGADYYSVLRAQ---SAIESAEVALVLLDGGEPLSEQDVKVVNLVVESGRALVLVNN 382 Query: 139 KIDCVKPERLLE 150 K D V R E Sbjct: 383 KWDLVDEYRQQE 394 >gi|295396781|ref|ZP_06806916.1| ribosome-associated GTPase EngA [Brevibacterium mcbrellneri ATCC 49030] gi|294970365|gb|EFG46305.1| ribosome-associated GTPase EngA [Brevibacterium mcbrellneri ATCC 49030] Length = 503 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 12/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VAL+G N GKS+L+NR VG++ +V + TTR V +V + Q F+DT GI Sbjct: 245 VALIGRPNVGKSSLLNRLVGSERVMVDNVAGTTRDPVDELVVLGDRQWRFVDTAGIRKRA 304 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + D Y L + + ++ A++ +++++ + + ++ + + L+L+ N Sbjct: 305 RQSSGADYYAALRTQ---TALERAEVALVLLEADQPISEQDLRVINSVIEAGRALVLVFN 361 Query: 139 KIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 K D + +R LE + EI +L + +SA G D ++ L + L Sbjct: 362 KWDLLDEDRRLELEKEIEMQLGHVSWAPRVNISAKTGRHADKLVPALDAAL 412 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 4/166 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S +A+VG N GKSTLVNR +G + ++V TR V I +DT G Sbjct: 67 SPILAIVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYTAHWAGRDITLVDTGGWD 126 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + ++ AD V V+D H + +++ + K +I+ NK+D Sbjct: 127 IDSKGMASRIAEQAEIAVELADAVVFVLDVHTGITSTDEHIVRMLRKTGKPVIVAANKVD 186 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E L E+ N + + + VSA G G D+L+ LP Sbjct: 187 DERSE--LAAFELWN--LGLGEPSPVSAMHGRGVADLLDRAVEILP 228 >gi|99080832|ref|YP_612986.1| GTP-binding protein EngA [Ruegeria sp. TM1040] gi|123077693|sp|Q1GHZ2|DER_SILST RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|99037112|gb|ABF63724.1| Small GTP-binding protein domain [Ruegeria sp. TM1040] Length = 492 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V + TR + G + + +D+ G+ +A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLEDA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 D S M RL+ ++ AD+ ++D+ + + + K+S+ +IL NK Sbjct: 64 TDNSLEGRMRRLTERAVEMADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANK 120 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 22/188 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + TR + + + + DT G+ Sbjct: 209 VAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLKIDWSGTPMRIFDTAGMRKKA 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R ++I +NK Sbjct: 269 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVVIAVNK 326 Query: 140 --IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 I+ K E+L E +L+ + VSA G G D DV N Sbjct: 327 WDIEDEKQEKLKALKEAFERLLPQLRGAPLVTVSAKTGRGLDRLHAAIMKAHDVWNRRVP 386 Query: 185 TLPLAPWV 192 T L W+ Sbjct: 387 TAALNRWL 394 >gi|298735582|ref|YP_003728105.1| tRNA modification GTPase [Helicobacter pylori B8] gi|298354769|emb|CBI65641.1| tRNA modification GTPase [Helicobacter pylori B8] Length = 461 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 3/142 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 204 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 263 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 264 EEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 323 Query: 122 LLKEIAKRSSRLILILNKIDCV 143 L+ + + I++LNK D V Sbjct: 324 LIDTLNRAKKPCIVVLNKNDLV 345 >gi|238897217|ref|YP_002921965.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae NTUH-K2044] gi|330005209|ref|ZP_08305168.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3] gi|238549547|dbj|BAH65898.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328536341|gb|EGF62703.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3] Length = 454 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ +A D ++ I +W I AD V +VD Sbjct: 261 IDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQADRVLFMVDG 305 >gi|298490946|ref|YP_003721123.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708] gi|298232864|gb|ADI64000.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708] Length = 464 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 21/182 (11%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 EIT F KD + R+G VA+VG N GKS+L+N + + +IVT TTR +V Sbjct: 208 EITKFLATKDQ-GELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV-- 264 Query: 64 IVSEKESQIV-------FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 ESQ+V LDT GI D K+ + S AD+V +D+ Sbjct: 265 -----ESQLVVGGIPVQVLDTAGIRETADQVEKIGVERSRRASSAADLVLFTIDASAGWT 319 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 ++ +++ R +IL++NKID + + E+ + +K+ + + +A + G D Sbjct: 320 QADQEIYEQVKHRP--VILVINKIDLIS---IAEKQTLQSKIQSPKSKIVTAAAQNQGID 374 Query: 177 DV 178 + Sbjct: 375 SL 376 >gi|268593180|ref|ZP_06127401.1| ribosome-associated GTPase EngA [Providencia rettgeri DSM 1131] gi|291311226|gb|EFE51679.1| ribosome-associated GTPase EngA [Providencia rettgeri DSM 1131] Length = 492 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + E + + +DT G+ Sbjct: 208 LAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRKRG 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++ +NK D Sbjct: 268 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNAGRSLVIAVNKWD 327 Query: 142 CVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +KP E + + E+ V + +SA G G ++ Sbjct: 328 GMKPEDREHVKDMLELRLGFVDFARIHFISALHGSGVGNLF 368 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 54/120 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ L + K + R + L+ NK D + Sbjct: 64 EEGVETHMAAQSLQAIEEADIVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGI 123 >gi|183220801|ref|YP_001838797.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910901|ref|YP_001962456.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775577|gb|ABZ93878.1| GTPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779223|gb|ABZ97521.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 450 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 10/135 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGI- 80 V +VG N GKSTL N + A+ +I + TR +++ V E +I F DTPG+ Sbjct: 6 VVTIVGRQNVGKSTLFNAILRAQSAITENTAGVTRDVLQKTVERAEFKIPFTLSDTPGLD 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL-----KEIAKRSSRLIL 135 D K +I +++ ++H+D++ V+D H++L+ + L+ EI K + L L Sbjct: 66 IENIDEISKEIIEIAFEHLRHSDLILHVID-HKDLRKYDYKLIDYFKKDEILKEKNVLTL 124 Query: 136 ILNKIDCVKPERLLE 150 I NK+D + E LE Sbjct: 125 I-NKVDTEQDEYDLE 138 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 4/126 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N+GKS+L+N F+G K ++V+ TTR V + ++ +DT GI Sbjct: 184 IAIIGKPNSGKSSLLNTFLGYKRAVVSEVPGTTRDSVSDQFFFQNHKLEIIDTAGIRRKS 243 Query: 85 DSYHKLMI---RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + L + + ++ AD+V L+VD+ + L + EI + +I+ +NK D Sbjct: 244 KTGESLEFYSYKRTLHSLGEADVVVLLVDAMKGLGEFDKKIFGEIQELGKPMIVAVNKWD 303 Query: 142 CVKPER 147 V PE+ Sbjct: 304 LV-PEK 308 >gi|163856334|ref|YP_001630632.1| GTP-binding protein EngA [Bordetella petrii DSM 12804] gi|229710727|sp|A9IK66|DER_BORPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163260062|emb|CAP42363.1| putative GTP-binding protein [Bordetella petrii] Length = 451 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 7/184 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 VALVG N GKSTL NR ++ ++V TR G ++ + +DT G Sbjct: 6 VVALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGDTPFIVIDTGGFEPV 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILNKID 141 AK + M R + I AD+V +VD+ + + H++ + + K R++L +NK + Sbjct: 66 AKTGILREMARQTRQAIAEADVVVFLVDARAGVNAHDHEIAQLLRKSGQQRVVLAVNKAE 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 + + A + + + +SA G G D++ L + P A +DL Sbjct: 126 GMG----VGNATSEFHELGLGTPYPISAAHGDGIVDLIGLALQDL-VEPEPEPAPDAADL 180 Query: 202 PMFH 205 P H Sbjct: 181 PPDH 184 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N +G + I TTR + + +DT G+ Sbjct: 188 LAIVGRPNVGKSTLINTLLGEERVIAFDLPGTTRDAIEIDFERDGRKYTLIDTAGLRRRG 247 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V L++D+ E+ + + + +++ +NK D Sbjct: 248 KVFEAVEKFSVIKTLQAIEASNVVLLMLDAQTEVSEQDAHIAGFVLETGRAVVVAINKWD 307 Query: 142 CVK-PERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + +R + E KL F+ T +SA KG G VL Sbjct: 308 GLDIDQRERIEREFRRKLRFLSFAPTHTISALKGQGIKPVL 348 >gi|146278196|ref|YP_001168355.1| GTP-binding protein EngA [Rhodobacter sphaeroides ATCC 17025] gi|166225848|sp|A4WUI6|DER_RHOS5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145556437|gb|ABP71050.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17025] Length = 487 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLIDLRFTVIDTAGLEEV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS M RL+ ++ AD+ ++D + + + K+++ +IL +NK + Sbjct: 64 TDDSLQGRMRRLTERAVEMADVCLFLIDGRVGVTPSDEVFADILRKKNAHVILGVNKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + I + + + +SA G G DD+ + L Sbjct: 124 ----RAGDAGAIEAWSLGLGEPVRLSAEHGEGMDDLYHIL 159 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 22/190 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G NAGKSTL+N+ +G + + TR + + + I DT G+ Sbjct: 205 IAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAISVRSEWQGTPIRIFDTAGMRKKA 264 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 D KL + ++ A +VV E+ DL + + A+ R +++ +NK Sbjct: 265 RISDKLEKLSVADGLRAVRFA--EVVVVLLDVEIPFEQQDLRIADFAETEGRAVVVAVNK 322 Query: 140 IDC--VKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 D K E+L E E+ ++L+ + VSA G G D D+ N + Sbjct: 323 WDLEGEKQEKLAELKEMFDRLLPQLRGAPLVTVSAKTGRGLDRLHAAILKAHDIWNRRIT 382 Query: 185 TLPLAPWVYS 194 T L W+ + Sbjct: 383 TARLNSWLGA 392 >gi|270667892|ref|ZP_06222479.1| conserved hypothetical protein [Haemophilus influenzae HK1212] gi|270316770|gb|EFA28527.1| conserved hypothetical protein [Haemophilus influenzae HK1212] Length = 112 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 3 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD + L++DS Sbjct: 63 DEVERIGISRAWTEIEQADRIILMLDS 89 >gi|269958675|ref|YP_003328462.1| GTP-binding protein EngA [Anaplasma centrale str. Israel] gi|269848504|gb|ACZ49148.1| GTP-binding protein EngA [Anaplasma centrale str. Israel] Length = 438 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 13/182 (7%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F EH+ ++ ++ ++++G N GKST +N +G K I TTR + Sbjct: 161 FEGEHRQKTRE--KAITISIIGQPNVGKSTFMNSILGEKRVITDGTAGTTRDSISAEYCY 218 Query: 68 KESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-L 123 K +++ DT GI ++ KL I+ + I + +V L+VD L +N DL + Sbjct: 219 KGVRLLLTDTAGIRKRAKVTENMEKLSIKSATDAISRSSVVVLMVDF--TLGINQQDLFI 276 Query: 124 KEIAKRSSR-LILILNKIDCVK----PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + A R + ++++LNK D + E +L+ +++ F +SA +G GC V Sbjct: 277 ADTAIREGKGIVVVLNKSDLIDDKAVEEEILQAIRRHSRVDFDVPIMKISALRGTGCSKV 336 Query: 179 LN 180 L+ Sbjct: 337 LD 338 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 2/130 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST+ NR V +K +IV++ TR G+ + Q V +DT G+ A Sbjct: 4 VAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRDRKEGVANFCGLQFVAIDTGGV-GAG 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 L+ ++ D+V VVD+ + D K + KR+S+ +IL++NK + Sbjct: 63 TGMQALVTEQVELALECTDVVLFVVDAKKGTDAEDTDFAKWLRKRTSKPVILVVNKCESN 122 Query: 144 KPERLLEQAE 153 K L++ E Sbjct: 123 KSCALIDDME 132 >gi|261346747|ref|ZP_05974391.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541] gi|282565147|gb|EFB70682.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541] Length = 454 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VDS Sbjct: 279 DEVERIGIERAWKEIEQADRVLFMVDS 305 >gi|122702879|emb|CAL88629.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ++ A + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILNVLNLNP 170 >gi|134299998|ref|YP_001113494.1| small GTP-binding protein [Desulfotomaculum reducens MI-1] gi|134052698|gb|ABO50669.1| iron-only hydrogenase maturation protein HydF [Desulfotomaculum reducens MI-1] Length = 409 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 14/172 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G NAGKS+L+N +++V++ TT + + + +V +DT GI ++ Sbjct: 12 IAIFGRRNAGKSSLINALTSQDIAVVSNIPGTTTDPVYKAMEILPVGPVVIIDTAGIDDS 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 D +L ++ S + AD+V LV+D+ + D +IA+R ++++ NK Sbjct: 72 GD-LGELRVKRSMDVLNKADMVLLVIDAGS----GVTDYELKIARRCQEKKLPVVVVFNK 126 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ID + EQ K T +VSA G G D+ + +T P A W Sbjct: 127 IDA---HHVTEQQIEEAKTQLAGPTVVVSALNGQGIGDLKIAIVNTAP-ATW 174 >gi|296126458|ref|YP_003633710.1| ribosome-associated GTPase EngA [Brachyspira murdochii DSM 12563] gi|296018274|gb|ADG71511.1| ribosome-associated GTPase EngA [Brachyspira murdochii DSM 12563] Length = 484 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 7/156 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NRF G + SIV TR I + + DT G+ + Sbjct: 4 IAILGRPNVGKSTLFNRFAGRRKSIVDPTAGVTRDISMSLAYIDDIAFNVFDTGGLLDIS 63 Query: 85 DSYHKLMIRLSW--STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D +R + + ADI+ +VD+H+ + H + I K +IL++NK+D Sbjct: 64 DDTLNEKVREKALKTAAEDADILLFLVDAHQSHPDDRH-FINIIRKSGKPIILVINKVDA 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 L+ + + I +SA +G DD+ Sbjct: 123 DSHNNLINEF----YSLGINDVVPISAEHNNGIDDL 154 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 3/128 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D ++ +A+VG NAGKSTL+N +G SIV+ TTR + + K I +D Sbjct: 215 EDENKIINIAIVGKPNAGKSTLLNTLIGKDRSIVSDIAGTTRDAIDETFNFKGDDICLVD 274 Query: 77 TPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T GI N + + I+ +D+ L++D L + I +R + Sbjct: 275 TAGIRKKKNVNTDVEYYSVNRAIKAIESSDVCILMLDVFEGLTDQDKTIANLIIERKKGI 334 Query: 134 ILILNKID 141 ++ NK D Sbjct: 335 VIAANKWD 342 >gi|240103488|ref|YP_002959797.1| GTP-binding protein [Thermococcus gammatolerans EJ3] gi|239911042|gb|ACS33933.1| GTP-binding protein [Thermococcus gammatolerans EJ3] Length = 188 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 34/159 (21%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE------------KESQI 72 VA++GA N GKSTL+N +G KVS V TT+ I+R + + Sbjct: 4 VAIIGAENVGKSTLMNALLGGKVSEVEDLPGTTKGIIRKRFGKLKIPKGMKNPFGGADEF 63 Query: 73 VFLDTPGIFN----------AKDSYHKLMIRLSWSTIKHADIVCLVVDS----HRELKVN 118 V +DT G+F+ +++ + +LM I ADI+ +VD+ HR ++ Sbjct: 64 VLIDTAGLFDPRLELRGKVLSEERFRELM-----EEIVSADIIIHMVDATVGLHRGME-K 117 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANK 157 +H +LK + +I+++NKID V ER+ E +I K Sbjct: 118 LHHMLK--MRYEKPIIVVINKIDLVSRERVEELRKIIKK 154 >gi|89054736|ref|YP_510187.1| GTP-binding protein, HSR1-related [Jannaschia sp. CCS1] gi|88864285|gb|ABD55162.1| GTP-binding protein HflX [Jannaschia sp. CCS1] Length = 435 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 14/170 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR GA V T +R + + ++ DT G + Sbjct: 217 VALVGYTNAGKSTLFNRLTGADVMAKDMLFATLDPTMRAVTLPDGTDVILSDTVGFISDL 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHR---ELKVNIHDLLKEIA-KRSSRLILILNK 139 + R + + AD++ V D SH E ++H +L ++ S + + NK Sbjct: 277 PTQLVAAFRATLEEVLDADLIVHVRDISHPQTVEQAEDVHAILGDLGVSDQSAQLEVWNK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCDDVLNYLCSTL 186 +D LL++A + V ++ F SA G G DD L + TL Sbjct: 337 VD------LLDEAAQTARQVEADRNEAIFATSALTGAGMDDFLTAVSHTL 380 >gi|56416911|ref|YP_153985.1| GTP-binding protein EngA [Anaplasma marginale str. St. Maries] gi|222475278|ref|YP_002563694.1| GTP-binding protein (engA) [Anaplasma marginale str. Florida] gi|254995098|ref|ZP_05277288.1| GTP-binding protein EngA [Anaplasma marginale str. Mississippi] gi|255003264|ref|ZP_05278228.1| GTP-binding protein EngA [Anaplasma marginale str. Puerto Rico] gi|255004391|ref|ZP_05279192.1| GTP-binding protein EngA [Anaplasma marginale str. Virginia] gi|56388143|gb|AAV86730.1| GTP-binding protein [Anaplasma marginale str. St. Maries] gi|222419415|gb|ACM49438.1| GTP-binding protein (engA) [Anaplasma marginale str. Florida] Length = 438 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 13/182 (7%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F EH+ + ++ ++++G N GKST +N +G K I TTR + Sbjct: 161 FEGEHRQ--KPREKAITISIIGQPNVGKSTFMNSILGEKRVITDGTAGTTRDSISAEYCY 218 Query: 68 KESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-L 123 K +++ DT GI ++ KL I+ + I + +V L+VD L +N DL + Sbjct: 219 KGVRLLLTDTAGIRKRAKVTENMEKLSIKSATDAISRSSVVVLMVDF--TLGINQQDLFI 276 Query: 124 KEIAKRSSR-LILILNKIDCVKP----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + A R + ++++LNK D + E +L+ +++ F +SA +G GC V Sbjct: 277 ADTAIREGKGIVVVLNKSDLIDDKAVEEEILQAIRRHSRVDFDVPIMKISALRGTGCSKV 336 Query: 179 LN 180 L+ Sbjct: 337 LD 338 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 2/130 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST+ NR V +K +IV++ TR G+ + Q V +DT G+ A Sbjct: 4 VAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRDRKEGVANFCGLQFVAIDTGGV-GAG 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 L+ ++ D+V VVD+ + D K + KR+ + +IL++NK + Sbjct: 63 TGMQALVTEQVELALECTDVVLFVVDAKKGTDAEDTDFAKWLRKRTPKPVILVVNKCESN 122 Query: 144 KPERLLEQAE 153 K L++ E Sbjct: 123 KSCALIDDME 132 >gi|327395913|dbj|BAK13335.1| tRNA modification GTPase TrmE [Pantoea ananatis AJ13355] Length = 454 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 10/168 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+ AD V +VD ++ + R + ++ NK D Sbjct: 279 DEVERIGIERAWHEIEQADRVLFMVDGTTTDATEPAEIWPDFVARLPPQLPITVVRNKAD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 R L AN I +SA G D + ++L T+ A Sbjct: 339 ITGEARGLTN---ANGHALIR----LSARTSEGLDTLRDHLKQTMGFA 379 >gi|299771613|ref|YP_003733639.1| GTP-binding protein EngA [Acinetobacter sp. DR1] gi|298701701|gb|ADI92266.1| GTP-binding protein EngA [Acinetobacter sp. DR1] Length = 469 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + + +DT GI Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGEN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPLQVAASHGRGVQQMLEDVLENVP 163 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 13/178 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTLVNR +G + + TTR + Q +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVRRKG 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKI 140 ++ K I + IK A +V +V+D+ RE V L A + R ++I +NK Sbjct: 239 KVEEMIEKFSIVKTLQAIKDAHVVVVVLDA-REGVVEQDLHLIGYALEAGRAMMIAINKW 297 Query: 141 D-CVKPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL-----NYLCSTLPLAP 190 D + +R + ++ + FI K ++SA G G D+ Y S L ++P Sbjct: 298 DNMTEYDRKQCKLDVDRRFDFIPWAKVHLISALHGTGVGDMYPTIHRAYDSSHLKVSP 355 >gi|217033108|ref|ZP_03438572.1| hypothetical protein HPB128_27g15 [Helicobacter pylori B128] gi|216945181|gb|EEC23872.1| hypothetical protein HPB128_27g15 [Helicobacter pylori B128] Length = 450 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 3/142 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKIDCV 143 L+ + + I++LNK D V Sbjct: 313 LIDTLNRAKKPCIVVLNKNDLV 334 >gi|152972614|ref|YP_001337760.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166200482|sp|A6TG09|MNME_KLEP7 RecName: Full=tRNA modification GTPase mnmE gi|150957463|gb|ABR79493.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 454 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ +A D ++ I +W I AD V +VD Sbjct: 261 IDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQADRVLFMVDG 305 >gi|114319757|ref|YP_741440.1| GTP-binding protein EngA [Alkalilimnicola ehrlichii MLHE-1] gi|122312352|sp|Q0AB37|DER_ALHEH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114226151|gb|ABI55950.1| small GTP-binding protein [Alkalilimnicola ehrlichii MLHE-1] Length = 467 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V TR G+ E + +DT G+ + Sbjct: 4 VIALVGRPNVGKSTLFNQLTRSRDALVADHPGLTRDRQYGVGKVGERPYIVVDTGGLGDD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M + + + I+ AD + +VD +L + ++ + L++NK D V Sbjct: 64 PEGVEQGMHQQALAAIEEADAILFLVDGRSGPTAADEELAAHLRRQGKPVWLVVNKTDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L AE + + + ++A G G +++++ + LP Sbjct: 124 --DHRLATAEF--HALGLGEPLPIAAAHGRGIAGLMDHVLAGLP 163 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTLVNR +G + +V TTR V + +DT G+ Sbjct: 184 IAIVGRPNVGKSTLVNRLLGEERVLVYDMPGTTRDSVFIPLERDGRPYTLIDTAGMRRRA 243 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A +V LV+D+ + L+ + + L+L +NK D Sbjct: 244 RVHETVEKFSVIQTLKAMEAAHVVILVIDAREGVTDQDTHLIGHVLESGRALVLAINKWD 303 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E R +A + KL F+ + +SA G G Sbjct: 304 GLTAEQREAVKAGLERKLTFLNFARRHFISALHGSGV 340 >gi|310765880|gb|ADP10830.1| tRNA modification GTPase trmE [Erwinia sp. Ejp617] Length = 467 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 232 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 291 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI---LILNKID 141 D ++ I +W I+ AD V +VD + ++ + R + ++ NK D Sbjct: 292 DEVERIGIERAWHEIEQADHVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKAD 351 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R +E+ N L+ +SA G G +++ ++L Sbjct: 352 ITGETRGVEKVS-TNSLI------RLSARTGEGIENLRDHL 385 >gi|284007058|emb|CBA72333.1| probable tRNA modification GTPase [Arsenophonus nasoniae] Length = 470 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 10/141 (7%) Query: 12 HKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 H D V+ + G V + G NAGKS+L+N G + +IVT TTR ++R Sbjct: 215 HLDSVRSQAYQGSLLREGMKVVIAGRPNAGKSSLLNALSGREAAIVTDIAGTTRDVLREH 274 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 + + +DT G+ A D K+ + +W I+ AD + +VDS + Sbjct: 275 IHIDGMPLHIIDTAGLREATDEVEKIGVERAWQEIEQADHILFMVDSTTTQATEPKQIWP 334 Query: 125 EIAKR---SSRLILILNKIDC 142 E R S + +I NK+D Sbjct: 335 EFMARLPKSLPITVIRNKVDI 355 >gi|254494883|ref|ZP_01052239.2| tRNA modification GTPase, ThdF family [Polaribacter sp. MED152] gi|213690465|gb|EAQ41667.2| tRNA modification GTPase, ThdF family [Polaribacter sp. MED152] Length = 467 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKSTL+N + + +IV+ TTR + + + F+DT GI + Sbjct: 230 VAIIGEPNVGKSTLLNALLNEERAIVSDIAGTTRDAIEDELIIEGVAFRFIDTAGIRKTE 289 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D + I+ ++ ++A ++ ++D+ E K N ++ I +R + +L+++ NKID Sbjct: 290 DIVENIGIKKAYEKAENAQLIIFLIDAKSENKENRLAEIEAIQQRFPNKKLLVVANKIDL 349 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + P LEQ + +N I+ +SA G D++ L S + + Sbjct: 350 I-PTEELEQLK-SN----IDNLMPLSAKNNVGIDELKQELTSLVNIGAL 392 >gi|257061940|ref|YP_003139828.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802] gi|256592106|gb|ACV02993.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802] Length = 460 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + + +IVT TTR +V + I LDT G Sbjct: 223 RTGLKVAIVGRPNVGKSSLLNAWSCSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D KL + S AD+V L +D+ + +++ R LIL++NK Sbjct: 283 IRETADRVEKLGVERSRHVASQADLVLLTIDAQMGWTTEDEAIYQQVQHRP--LILVINK 340 Query: 140 ID 141 ID Sbjct: 341 ID 342 >gi|260549069|ref|ZP_05823290.1| small GTP-binding domain-containing protein [Acinetobacter sp. RUH2624] gi|260407797|gb|EEX01269.1| small GTP-binding domain-containing protein [Acinetobacter sp. RUH2624] Length = 469 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + + +DT GI + Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGES 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPLQVAASHGRGVQQMLEDVLQDVP 163 Score = 36.2 bits (82), Expect = 5.7, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +A++G N GKSTLVNR +G + + TTR + + + +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGV 234 >gi|145295562|ref|YP_001138383.1| GTP-binding protein EngA [Corynebacterium glutamicum R] gi|140845482|dbj|BAF54481.1| hypothetical protein [Corynebacterium glutamicum R] Length = 543 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + I + DT G Sbjct: 106 TVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPN 165 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + + + AD++ VVD+ + + ++ + +IL+ NK D Sbjct: 166 VKGIHASIAQQAEVAMSTADVIVFVVDTKVGITETDSVMAAKLLRSEVPVILVANKFDS- 224 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + AE + + + + VSA G G DVL+ + P P Sbjct: 225 -DSQWADMAEFYS--LGLGDPYPVSAQHGRGGADVLDKILELFPEEP 268 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+F G S+V + TT V ++ + F+DT G+ Sbjct: 280 VALVGKPNVGKSSLLNKFAGETRSVVDNVAGTTVDPVDSLIQLDQKLWKFVDTAGLRKKV 339 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 S H+ L + I A++ L++DS + +L I L++ NK D Sbjct: 340 KTASGHEYYASLRTHGAIDAAELCVLLIDSSEPITEQDQRVLAMITDAGKALVIAFNKWD 399 Query: 142 CVKPERLLE 150 + +R ++ Sbjct: 400 LMDEDRRID 408 >gi|313681708|ref|YP_004059446.1| tRNA modification GTPase trme [Sulfuricurvum kujiense DSM 16994] gi|313154568|gb|ADR33246.1| tRNA modification GTPase trmE [Sulfuricurvum kujiense DSM 16994] Length = 447 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 7/128 (5%) Query: 21 RSGC-----VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 RSG VA++G N GKS+L+N + + +IV+ TTR + V I + Sbjct: 208 RSGLMQGFRVAIIGKPNVGKSSLLNALLDYERAIVSDIAGTTRDTIEEQVRIGTHLIRLV 267 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--L 133 DT GI NA D ++ I S + I++AD+V + D+ RE+ ++ + + S Sbjct: 268 DTAGIRNASDEIERIGIERSIAAIENADVVIALFDASREIDEEDRSIIDLVERYRSEKPF 327 Query: 134 ILILNKID 141 I I+NK D Sbjct: 328 ICIVNKSD 335 >gi|89100947|ref|ZP_01173794.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911] gi|89084356|gb|EAR63510.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911] Length = 461 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 8/177 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N V +IVT TTR ++ V+ + + LDT G Sbjct: 221 REGLSTVIVGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LVV+ EL +L K + +I+I+NK Sbjct: 281 IRETEDIVERIGVERSRQVLKEADLILLVVNYSDELTQEDENLFKVVEDMD--VIVIVNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D P+++ E +L + S + G D+ L S+L A + + D Sbjct: 339 TDL--PQQI--DMERVRELAAGHRLVTTSLLEDQGVDE-LEESISSLFFAGSIEAGD 390 >gi|147772302|emb|CAN64562.1| hypothetical protein VITISV_038233 [Vitis vinifera] Length = 434 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N + ++ +IVT TTR +V VS + LDT GI Sbjct: 165 IAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETD 224 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLL---KEIAKRSSRLILILN 138 D K+ + S + AD++ + + D + + + K+ + S+ +IL++N Sbjct: 225 DIVEKIGVERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTPVILVVN 284 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 KIDC P E N K A G G D+ Sbjct: 285 KIDCA-PSACTELFMXGNSF---SKHIFTCAVTGQGISDL 320 >gi|153803664|ref|ZP_01958250.1| probable tRNA modification GTPase TrmE [Vibrio cholerae MZO-3] gi|124120801|gb|EAY39544.1| probable tRNA modification GTPase TrmE [Vibrio cholerae MZO-3] Length = 325 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 278 DAVEKIGIERAWEEIRQADRVLFMVDG 304 >gi|298482641|ref|ZP_07000825.1| tRNA modification GTPase TrmE [Bacteroides sp. D22] gi|298271104|gb|EFI12681.1| tRNA modification GTPase TrmE [Bacteroides sp. D22] Length = 465 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VD+ I L ++I R LI++ NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDAVNAAS-QIEQLSEKIIPRCEGKHLIVVFNKADL 341 Query: 143 VKPER 147 ++ ++ Sbjct: 342 IEDKQ 346 >gi|170725905|ref|YP_001759931.1| GTP-binding protein EngA [Shewanella woodyi ATCC 51908] gi|238688689|sp|B1KLB1|DER_SHEWM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169811252|gb|ACA85836.1| small GTP-binding protein [Shewanella woodyi ATCC 51908] Length = 488 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + +R ++ NK+D + Sbjct: 64 EEGIETHMAEQSMAAIEEADVVLFLTDARAGLTAADQAISEHLRRREKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + AE + + + + ++A +G G +++ Y LAP+ Sbjct: 124 DADSAC--AEFW--ALGLGEVYQMAAAQGRGVTNMIEY-----ALAPYA 163 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 202 LAVIGKPNVGKSTLTNRILGEERVVVYDAPGTTRDSIYIPMERDGREYVLIDTAGVRRRS 261 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ ++V L+VD+ + LL L++ +NK D Sbjct: 262 KVNETVEKFSVIKTLKAVEDCNVVLLIVDAREGIAEQDLGLLGFALNAGRALVIAVNKWD 321 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + ++E+ +L FI+ + +SA G G Sbjct: 322 GIDQDIKDRVKSELDRRLGFIDFARIHFISALHGTGV 358 >gi|90105796|gb|ABD87833.1| Small GTP-binding protein domain [Rhodopseudomonas palustris BisB18] Length = 465 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 7/173 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NAK 84 A++G N GKSTL NR VG K+++V TR G + + +DT G+ AK Sbjct: 11 AIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGQGKLGDLEFTIIDTAGLDEGAK 70 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 S M + + I AD + V+D+ L N + A+R+++ +IL+ NK + Sbjct: 71 GSLVARMQEQTEAAIALADALMFVIDARAGLTPNDR-AFADFARRANKPVILVANKSEG- 128 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 R E + + + + +SA G G D+ + L + +P ++ D Sbjct: 129 ---RHGEIGAMESYALGLGDPIQISAEHGEGLSDLYDALRAVMPEPDVLFDED 178 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKST++N +G + + + + TTR + V K Q DT G+ Sbjct: 196 VAIVGRPNAGKSTMINHLLGEERLLTSAEAGTTRDSISVEVDYKGRQFRIFDTAGLRRRS 255 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 ++ KL + + I+ A++V L++DS E + I DL I + L++ +N Sbjct: 256 RIEEKLEKLSVADALRAIRFAEVVVLMMDSQNKFEEQDLRIADL---IEREGRALVIAVN 312 Query: 139 KIDCV 143 K D + Sbjct: 313 KWDLM 317 >gi|332674218|gb|AEE71035.1| tRNA modification GTPase TrmE [Helicobacter pylori 83] Length = 450 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 3/142 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DIV V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKIDCV 143 L+ + + I++LNK D V Sbjct: 313 LIDTLNRAKKPCIVVLNKNDLV 334 >gi|292490141|ref|YP_003533036.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430] gi|291555583|emb|CBA24183.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430] Length = 474 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 221 DAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIQ 280 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 281 IDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADHVLFMVDG 325 >gi|292901145|ref|YP_003540514.1| tRNA modification GTPase [Erwinia amylovora ATCC 49946] gi|291200993|emb|CBJ48132.1| probable tRNA modification GTPase [Erwinia amylovora ATCC 49946] Length = 454 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIQ 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADHVLFMVDG 305 >gi|122702743|emb|CAL88561.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSVLDLNP 170 >gi|325294918|ref|YP_004281432.1| tRNA modification GTPase mnmE [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065366|gb|ADY73373.1| tRNA modification GTPase mnmE [Desulfurobacterium thermolithotrophum DSM 11699] Length = 463 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N + + +IVT TTR I+ V+ K + +DT GI A Sbjct: 227 VAIVGRPNVGKSSLLNAILKEERAIVTEIPGTTRDIIEETVTLKGIPLRLIDTAGIREAI 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D ++ I + +++ AD++ V+D + K + K+ +IL++NK D Sbjct: 287 DKVEQIGIERTMKSLEEADVILFVIDGSIGFTEEDRKISK-VLKKKENVILVINKKDL 343 >gi|293370767|ref|ZP_06617313.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CMC 3f] gi|292634127|gb|EFF52670.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CMC 3f] Length = 473 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 231 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETN 290 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VD+ I L ++I R LI++ NK D Sbjct: 291 DTIESLGIERTFQKLDQAEIVLWMVDAVNAAS-QIEQLSEKIIPRCEGKHLIVVFNKADL 349 Query: 143 VKPER 147 ++ ++ Sbjct: 350 IEDKQ 354 >gi|153005016|ref|YP_001379341.1| GTP-binding protein EngA [Anaeromyxobacter sp. Fw109-5] gi|152028589|gb|ABS26357.1| small GTP-binding protein [Anaeromyxobacter sp. Fw109-5] Length = 471 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 14/167 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----- 79 +A+VG N GKST VN +G + +V+ TTR + +V ++ + V DT G Sbjct: 203 LAIVGRPNVGKSTFVNSLLGHERFVVSDVPGTTRDAIDSLVEQRGQRFVVTDTAGIRRKS 262 Query: 80 -IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 I A ++Y ++R S I A++V ++D+ LL IA+++ L++++N Sbjct: 263 AIAQAVEAYS--VVR-SMKAIDRAEVVACLLDATEAGVEQDARLLGLIAEKAKALLVVIN 319 Query: 139 KIDCVKPERLLE---QAEIANKLVFIEKTFM--VSATKGHGCDDVLN 180 K D + E + + E+ +L F+ M VSA +G G VL+ Sbjct: 320 KWDIAEREGATQDWYRKELHKRLPFVSFAPMLFVSAKEGRGVTRVLD 366 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 77/175 (44%), Gaps = 13/175 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S VALVG N GKSTL NR G + +IV TR S + +DT G Sbjct: 8 SPRALVALVGRPNVGKSTLFNRLAGRRAAIVQDVPGVTRDRNYADFSFDGRALSVVDTGG 67 Query: 80 IFNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRL 133 +S +LM ++ ++ A V LVVD L ++ DLL+ K L Sbjct: 68 F--EPESRDRLMSQVRQQAQLAVEEAAAVVLVVDGREGLTAVDRSVADLLRRAGK---PL 122 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + +NK+D + E + AE +L F E VSA G G D++ + L L Sbjct: 123 FVAVNKVDTARTEEEIPLAEF-YQLGFGE-VHSVSAEHGRGVGDLVEAIVEKLQL 175 >gi|122701723|emb|CAL88250.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F VS + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNVSVSHNRGISTLIDAILSALNLNP 170 >gi|122700657|emb|CAL87917.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDLNP 170 >gi|325115126|emb|CBZ50682.1| hypothetical protein NCLIV_011480 [Neospora caninum Liverpool] Length = 631 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L+NR +G S+V+ + TTR V +V +DT GI A+ Sbjct: 396 VAIVGRPNVGKSQLLNRLLGVSRSLVSPEAGTTRDAVDELVERDSVVYRLVDTAGIRRAR 455 Query: 85 -----DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +M++ + + D+ LV D+ R L L K I + ++++NK Sbjct: 456 VVKAQQGTEFVMVKRAERALTRCDVCLLVCDAERGLVKQDVLLAKRIEEEGRAAVIVMNK 515 Query: 140 IDCVKPE 146 D V E Sbjct: 516 WDTVDTE 522 >gi|149006299|ref|ZP_01830011.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74] gi|307127434|ref|YP_003879465.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B] gi|147762076|gb|EDK69038.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74] gi|306484496|gb|ADM91365.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B] gi|332075631|gb|EGI86099.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17545] Length = 457 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K A++V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEANLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|332143488|ref|YP_004429226.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553510|gb|AEB00229.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep ecotype'] Length = 462 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 21/197 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G+++ + V+D ++ G V + G NAGKS+L+N G +IVT T Sbjct: 195 GDLSTIMQSLTKVRDQAKQGTLLREGMQVVIAGRPNAGKSSLLNALAGRDSAIVTDIAGT 254 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR +++ + + +DT G+ + D ++ I +W I AD V VVDS Sbjct: 255 TRDVLKEHIHIDGMPVHIIDTAGLRESPDKVEQIGIERAWQAINEADHVLFVVDSTATSV 314 Query: 117 VNIHDLLKEIAKRSSRLI---LILNKIDCVKPERLLEQAEIANKLVFIEK----TFMVSA 169 ++ +++ E R + I ++ NK D L I V ++ +SA Sbjct: 315 IDPYEIWPEFMARLPQGIPVTVVRNKAD-------LSTLSIGQSSVNTQQGDISVINLSA 367 Query: 170 TKGHGCDDVLNYLCSTL 186 +G G D + +L T+ Sbjct: 368 KEGSGVDTLKAHLAKTM 384 >gi|307294125|ref|ZP_07573969.1| ribosome-associated GTPase EngA [Sphingobium chlorophenolicum L-1] gi|306880276|gb|EFN11493.1| ribosome-associated GTPase EngA [Sphingobium chlorophenolicum L-1] Length = 456 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 13/174 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-----GIVSEKESQIVFLDTPG 79 +A+VG NAGKSTL+NR +G + + TR + +E + +DT G Sbjct: 187 LAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWQWTSPDGQERPVRLIDTAG 246 Query: 80 I---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + +D KL + + + A++V L++DS R L+ + ++ + L++ Sbjct: 247 MRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLLLDSTRGLEAQDLRIADKVLEEGRALVVA 306 Query: 137 LNKIDCVKPERLLEQA---EIANKLVFIEKT--FMVSATKGHGCDDVLNYLCST 185 LNK D V+ L Q +++ L I VS G G DD++ T Sbjct: 307 LNKWDTVEHGSALYQGIKQALSDGLAQIRGVPIMTVSGATGKGLDDLIRVAFET 360 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 9/124 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V + TR G S +DT G + Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGQASLLGVDFTIIDTAGYEDE 63 Query: 84 KDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK----RSSRLILILN 138 +R+ + + +++AD+ VVD+ + I L +EIA+ + ++L+ N Sbjct: 64 DPQTLPGRMRMQTQAAVENADVALFVVDA----RAGITPLDEEIARWLREGDAPVVLMAN 119 Query: 139 KIDC 142 K + Sbjct: 120 KAEG 123 >gi|303235717|ref|ZP_07322324.1| tRNA modification GTPase TrmE [Prevotella disiens FB035-09AN] gi|302484164|gb|EFL47152.1| tRNA modification GTPase TrmE [Prevotella disiens FB035-09AN] Length = 460 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TN GKSTL+NR + +IV+ TTR ++ +S +F+DT GI Sbjct: 228 VAIIGKTNVGKSTLLNRLLRDNRAIVSDIHGTTRDVIEDSISINGVDFLFIDTAGIRKTT 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D +L I + + ++ A IV VVD + +++ + + +LIL+ NK+D Sbjct: 288 DYVEQLGIERTLAELQKAQIVLWVVD-QEPTEAEKEEIITQCTDK--QLILVRNKVD 341 >gi|300719145|ref|YP_003743948.1| tRNA modification GTPase [Erwinia billingiae Eb661] gi|299064981|emb|CAX62101.1| tRNA modification GTPase [Erwinia billingiae Eb661] Length = 454 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DGVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W+ I+ AD V +VD Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|295087115|emb|CBK68638.1| tRNA modification GTPase trmE [Bacteroides xylanisolvens XB1A] Length = 465 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VD+ I L ++I R LI++ NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDAVNAAS-QIEQLSEKIIPRCEGKHLIVVFNKADL 341 Query: 143 VKPER 147 ++ ++ Sbjct: 342 IEDKQ 346 >gi|308234454|ref|ZP_07665191.1| small GTP-binding protein [Atopobium vaginae DSM 15829] gi|328944301|ref|ZP_08241765.1| ribosome-associated GTPase EngA [Atopobium vaginae DSM 15829] gi|327491220|gb|EGF22995.1| ribosome-associated GTPase EngA [Atopobium vaginae DSM 15829] Length = 438 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 5/140 (3%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H++ Q S +A++G N GKS+LVN+ ++ S+V TTR + K Sbjct: 168 HEEAPQPKDSSVAIAVIGRPNVGKSSLVNKLSRSQRSLVADYAGTTRDAIDITFDYKGQT 227 Query: 72 IVFLDTPGIFNA----KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 I +DT G+ +D + M+R + AD+ LV+D+H + L Sbjct: 228 IRLVDTAGMRKKTQVHEDVEYYSMVR-GLQAMDKADVCLLVIDAHEGMTEQDQKLAGMAI 286 Query: 128 KRSSRLILILNKIDCVKPER 147 R L+L+LNK D ++ E+ Sbjct: 287 DRGCALVLVLNKTDLLRDEQ 306 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 VA+VG N GKSTLVNR K +IV TR + +DT GI Sbjct: 6 VAIVGRPNVGKSTLVNRLATTKSAIVHESRGVTRDRSYHACDWNGREFTLIDTGGIESLK 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD + + + AD++ +VVD L + + + +I +R + + L++NKID Sbjct: 66 SKDRFALGIREQALLGCDEADVIVMVVDGSIGL-TDEDETVAQIVRRMHKPVFLVVNKID 124 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 P+ +L+ KL E +SAT G D+L+ + + LP+ Sbjct: 125 --NPDEVLDSWNYL-KLGLGEPR-AISATHGTATGDLLDDIVNALPV 167 >gi|160887320|ref|ZP_02068323.1| hypothetical protein BACOVA_05338 [Bacteroides ovatus ATCC 8483] gi|156107731|gb|EDO09476.1| hypothetical protein BACOVA_05338 [Bacteroides ovatus ATCC 8483] Length = 465 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VD+ I L ++I R LI++ NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDAVNAAS-QIEQLSEKIIPRCEGKHLIVVFNKADL 341 Query: 143 VKPER 147 ++ ++ Sbjct: 342 IEGKQ 346 >gi|122701417|emb|CAL88098.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLDL 168 >gi|157368276|ref|YP_001476265.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568] gi|166991115|sp|A8G7P7|MNME_SERP5 RecName: Full=tRNA modification GTPase mnmE gi|157320040|gb|ABV39137.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568] Length = 454 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DSVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W+ I+ AD V +VD Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|315222529|ref|ZP_07864418.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211] gi|315188215|gb|EFU21941.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211] Length = 457 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D ++ + S ++ AD+V LV+++ L LL EI++ ++R IL+LNK Sbjct: 281 IRDTDDIVEQIGVERSKKALQDADLVLLVLNASEPLTEQDRKLL-EISQDTNR-ILLLNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|281412785|ref|YP_003346864.1| ribosome-associated GTPase EngA [Thermotoga naphthophila RKU-10] gi|281373888|gb|ADA67450.1| ribosome-associated GTPase EngA [Thermotoga naphthophila RKU-10] Length = 439 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 8/132 (6%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 V +VG N GKSTL N+ V K +IV + TR V+ IV +DT G+F Sbjct: 2 ATVLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLVDTCGVFD 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N +D + M ++ + I+ AD+V VVD R + L + K + IL+ NK + Sbjct: 62 NPQDIISQKMKEITLNMIREADLVLFVVDGKRGITKEDESLADFLRKSNVDTILVANKAE 121 Query: 142 C-------VKPE 146 VKPE Sbjct: 122 NLREFEREVKPE 133 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 9/165 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N + + ++V+ TTR V V + VF+DT G+ Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDEEVFIDGKKYVFVDTAGLRRRS 242 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + S +I+ AD+V +V+D+ + + + + +R +++ NK Sbjct: 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRIAGLVERRGRASVVVFNKW 302 Query: 141 DCV--KPERLLEQAEI-ANKLVFIEKTFMV--SATKGHGCDDVLN 180 D V + +R E ++ KL FI+ + ++ SA KG D V++ Sbjct: 303 DLVEHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNVDRVID 347 >gi|209527936|ref|ZP_03276422.1| small GTP-binding protein [Arthrospira maxima CS-328] gi|209491626|gb|EDZ91995.1| small GTP-binding protein [Arthrospira maxima CS-328] Length = 453 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N F+G + +IV+ TTR + IV + +DT GI K Sbjct: 179 VAIVGRPNVGKSSLLNTFLGQERAIVSPISGTTRDAIDTIVEHNGNTYRLVDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I ++ I+ AD+V V+D+ + L I+ ++++NK D Sbjct: 239 HVEYGAEFFGINRAFKAIRRADVVLFVIDAVEGVTDQDQKLAGRISDDGRACVIVVNKWD 298 Query: 142 CVKPER--LLEQAEIA-NKLVFIEKTFM--VSATKGHGCDDVL 179 V+ + +LE ++ ++L F++ M VSA G + + Sbjct: 299 AVEKDSYTILEYEKVMRSRLYFLDWADMIFVSAMTGQRVEKIF 341 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKSTLVNR + +IV + TR ++ + +DT G +F+ Sbjct: 6 VAIIGRPNVGKSTLVNRLTQTQDAIVHDQPGMTRDRTYRSAYWQDREFTVVDTGGLVFDD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + + A LVVD + + ++ ++L +NK C Sbjct: 66 DTEFLPLIREQALMALAEATAAILVVDGQTGPTGGDEAIASWLRQQKVPILLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 P + L QA +L + F +S+ G G ++L+ L LP + Sbjct: 124 SPTQGLTQAAQFWEL-GLGNPFPISSIHGSGTGELLDALIENLPAS 168 >gi|122702593|emb|CAL88486.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSTLNL 168 >gi|307128641|ref|YP_003880671.1| GTP-binding protein EngA [Candidatus Sulcia muelleri CARI] gi|306483103|gb|ADM89973.1| GTP-binding protein EngA [Candidatus Sulcia muelleri CARI] Length = 436 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 7/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V++VG +N GKSTL NR +G + SIV +K TR G + + +DT G N Sbjct: 5 VSIVGRSNVGKSTLFNRLIGYRKSIVNYKSGVTRDRNYGFCNWNGIEFCLIDTGGYTNKS 64 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + K + + ++ +DI+ +VD ++ +D+ K + K + L++NKID Sbjct: 65 ENIFEKKICEQFFFALEESDILLFLVDPSNDILGIDYDISKILLKLKKIIYLVINKIDLS 124 Query: 144 KPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCS 184 K + +N L + I T+ +S+ G G ++L+ + S Sbjct: 125 K-----NRYNTSNFLKLGISNTYCISSINGTGTGELLDSIVS 161 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL+N + +IVT+ TTR + + + + +DT GI Sbjct: 178 IAIVGRPNVGKSTLINTLLNKNQNIVTNISGTTRDSIDVFYKKFGIECILVDTAGIRKKK 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K++ + + +I+++D+ L++D + ++ K I + +++++NK D Sbjct: 238 KIKENIEFYSVMRAIKSIQNSDVCLLIIDIKSGFESQDMNIFKIIENNNKGIVILINKWD 297 Query: 142 CVK 144 +K Sbjct: 298 FIK 300 >gi|224370723|ref|YP_002604887.1| GTP-binding protein EngA [Desulfobacterium autotrophicum HRM2] gi|259645871|sp|C0QA05|DER_DESAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|223693440|gb|ACN16723.1| EngA2 [Desulfobacterium autotrophicum HRM2] Length = 492 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTH--KVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 VALVG N GKSTL NR ++ ++V V R V + +E+ +V DT G Sbjct: 4 VVALVGRPNVGKSTLFNRITRSRNALVDDFPGVTRDRHYVDAVWNERPFTLV--DTGGFL 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + IR I+ ADIV LV+D + DL + + S + ++NK+ Sbjct: 62 LSDDDFFAREIRGHVELAIEDADIVALVLDGRAGISPFDRDLADILRRTSKPVFFLVNKV 121 Query: 141 DCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + K E LLE + IEK + +SA G G + L+ + + P AP Sbjct: 122 ENHKQREELLEFYSLG-----IEKFYPMSAEHGIGVEPFLDDMVALFP-AP 166 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 8/157 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--- 80 C+A+ G N GKS+L+NR G +V+H TTR V + + +DT GI Sbjct: 189 CIAVAGRPNVGKSSLINRLFGKSRVVVSHVPGTTRDSVDLSIERNGRRFRLIDTAGIRRK 248 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ K I S ++ D+ +++D+ + + R + ++NK Sbjct: 249 GKVRERIEKYSILKSLKSLDQCDVALILIDADEGVTDQDITIAGYAQDRGCGALFLINKW 308 Query: 141 DCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKG 172 D + + R +E +K + +SA G Sbjct: 309 DLLDEDRKDQRRFMEDLRTKSKFLSFAPAMTISALTG 345 >gi|162136030|ref|YP_532152.2| GTP-binding protein EngA [Rhodopseudomonas palustris BisB18] Length = 460 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 7/173 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NAK 84 A++G N GKSTL NR VG K+++V TR G + + +DT G+ AK Sbjct: 6 AIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGQGKLGDLEFTIIDTAGLDEGAK 65 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 S M + + I AD + V+D+ L N + A+R+++ +IL+ NK + Sbjct: 66 GSLVARMQEQTEAAIALADALMFVIDARAGLTPNDR-AFADFARRANKPVILVANKSEG- 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 R E + + + + +SA G G D+ + L + +P ++ D Sbjct: 124 ---RHGEIGAMESYALGLGDPIQISAEHGEGLSDLYDALRAVMPEPDVLFDED 173 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKST++N +G + + + + TTR + V K Q DT G+ Sbjct: 191 VAIVGRPNAGKSTMINHLLGEERLLTSAEAGTTRDSISVEVDYKGRQFRIFDTAGLRRRS 250 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 ++ KL + + I+ A++V L++DS E + I DL I + L++ +N Sbjct: 251 RIEEKLEKLSVADALRAIRFAEVVVLMMDSQNKFEEQDLRIADL---IEREGRALVIAVN 307 Query: 139 KIDCV 143 K D + Sbjct: 308 KWDLM 312 >gi|170289127|ref|YP_001739365.1| small GTP-binding protein [Thermotoga sp. RQ2] gi|238688753|sp|B1LBI4|DER_THESQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|170176630|gb|ACB09682.1| small GTP-binding protein [Thermotoga sp. RQ2] Length = 439 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 8/132 (6%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 V +VG N GKSTL N+ V K +IV + TR V+ IV +DT G+F Sbjct: 2 ATVLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLVDTCGVFD 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N +D + M ++ + I+ AD+V VVD R + L + K + IL+ NK + Sbjct: 62 NPQDIISQKMKEITLNMIREADLVLFVVDGKRGITKEDESLADFLRKSNVDTILVANKAE 121 Query: 142 C-------VKPE 146 VKPE Sbjct: 122 NLREFEREVKPE 133 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 9/165 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N + + ++V+ TTR V V + VF+DT G+ Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDEEVFIDGKKYVFVDTAGLRRRS 242 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + S +I+ AD+V +V+D+ + + + + +R +++ NK Sbjct: 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRIAGLVERRGRASVVVFNKW 302 Query: 141 DCV--KPERLLEQAEI-ANKLVFIEKTFMV--SATKGHGCDDVLN 180 D V + +R E ++ KL FI+ + ++ SA KG D V++ Sbjct: 303 DLVEHREKRHDEFTKLFREKLYFIDYSPLIFTSADKGWNVDRVID 347 >gi|26986750|ref|NP_742175.1| tRNA modification GTPase TrmE [Pseudomonas putida KT2440] gi|148550508|ref|YP_001270610.1| tRNA modification GTPase TrmE [Pseudomonas putida F1] gi|60415983|sp|P0A175|MNME_PSEPK RecName: Full=tRNA modification GTPase mnmE gi|60415984|sp|P0A176|MNME_PSEPU RecName: Full=tRNA modification GTPase mnmE gi|166234811|sp|A5WBB6|MNME_PSEP1 RecName: Full=tRNA modification GTPase mnmE gi|24981340|gb|AAN65639.1|AE016190_5 tRNA modification GTPase [Pseudomonas putida KT2440] gi|45710|emb|CAA44418.1| unnamed protein product [Pseudomonas putida] gi|148514566|gb|ABQ81426.1| tRNA modification GTPase trmE [Pseudomonas putida F1] gi|313496414|gb|ADR57780.1| MnmE [Pseudomonas putida BIRD-1] Length = 456 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 3/130 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N+ G + +IVT TTR I+R + + +DT G+ + Sbjct: 219 VVIAGRPNAGKSSLLNQLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IAKR--SSRLILILNKID 141 D K+ + + I AD V LVVDS + L E +A+R +++ LI NK D Sbjct: 279 DHVEKIGVERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLAQRPDPAKVTLIRNKAD 338 Query: 142 CVKPERLLEQ 151 LEQ Sbjct: 339 LSGERVALEQ 348 >gi|325288104|ref|YP_004263894.1| tRNA modification GTPase mnmE [Cellulophaga lytica DSM 7489] gi|324323558|gb|ADY31023.1| tRNA modification GTPase mnmE [Cellulophaga lytica DSM 7489] Length = 478 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 16/165 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N F+ +IV+ TTR + ++ F+DT GI Sbjct: 240 VAIVGEPNVGKSTLLNAFLNEDRAIVSDIAGTTRDTIEDEIAIGGIGFRFIDTAGIRETT 299 Query: 85 DSYHKLMIRLSWSTIKHADIVCLV------VDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D + I+ ++ I+ A +V + +++ +KV I + + ++ L++I N Sbjct: 300 DVVESIGIKKTFEKIEQAQVVLYLSPLTPAIENLESIKVEIERIKNQFPLKT--LVVITN 357 Query: 139 KIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K D PE++ +AEI + T +SA G G + + N L Sbjct: 358 KKDLYTPEQIETIEAEIPS-------TLFISAKTGDGVETLKNKL 395 >gi|260171369|ref|ZP_05757781.1| tRNA modification GTPase TrmE [Bacteroides sp. D2] gi|315919680|ref|ZP_07915920.1| tRNA modification GTPase TrmE [Bacteroides sp. D2] gi|313693555|gb|EFS30390.1| tRNA modification GTPase TrmE [Bacteroides sp. D2] Length = 465 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VD+ I L ++I R LI++ NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDAVNAAS-QIEQLSEKIIPRCEGKHLIVVFNKADL 341 Query: 143 VKPER 147 ++ ++ Sbjct: 342 IEDKQ 346 >gi|229918701|ref|YP_002887347.1| GTP-binding protein EngA [Exiguobacterium sp. AT1b] gi|229470130|gb|ACQ71902.1| small GTP-binding protein [Exiguobacterium sp. AT1b] Length = 436 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR +G +VSIV K TR + G + +DT GI Sbjct: 5 VVAIVGRPNIGKSTIFNRIIGDRVSIVDDKPGVTRDRIYGTGEWLNRKFHLIDTGGIEVG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M + I AD++ +V+ + ++ + + + ++L +NK+D Sbjct: 65 DEPLLVQMRHQAELAIDEADVIIFMVNGREGITAADEEVANLLFRSNKPIVLAVNKVDNF 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L+ + L F + F +S T G G D+L+ + P Sbjct: 125 EMRDLMYE---FYSLGFGDP-FPISGTHGLGLGDLLDQVFELAP 164 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 12/146 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 +L+G N GKS+L N +G + IV++ TTR + + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLTNSILGEERVIVSNIAGTTRDAIDTPFTRDGQEYVIIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNK 139 +S + + + I+ +++V +V+D E + L E K +++++NK Sbjct: 239 VYESTERYSVMRAQKAIERSNVVLVVLDGEEGIIEQDKRVAGLAHEAGK---AIVIVVNK 295 Query: 140 IDCV-KPERLLEQAE--IANKLVFIE 162 D V K ++ +++ E I + +F++ Sbjct: 296 WDAVEKDDKTMKKMEEKIRQEFLFLD 321 >gi|253581911|ref|ZP_04859135.1| GTP-binding protein [Fusobacterium varium ATCC 27725] gi|251836260|gb|EES64797.1| GTP-binding protein [Fusobacterium varium ATCC 27725] Length = 441 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS+LVN+ G + +IV+ TTR + IV K+++ + +DT GI Sbjct: 179 LAIIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTIVQYKDNKYMIIDTAGIRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++S + + TIK AD+ L++D L + A+ +++++NK D Sbjct: 239 KVEESLEYYSVLRAIKTIKRADVCILMLDGKEGLTEQDKRIAGIAAEELKPIVVVVNKWD 298 Query: 142 CV 143 V Sbjct: 299 LV 300 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 9/122 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG +++IV TR + + V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDRIAIVDDMPGVTRDRLYRETEWNGVEFVVVDTGGLEPRN 64 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILNK 139 + + I+ + + AD++ VVD K ++ L +EIA K+ +IL +NK Sbjct: 65 NEFMMTKIKEQAEVAMNEADVILFVVDG----KSGVNPLDEEIAYILRKKQKPIILCVNK 120 Query: 140 ID 141 ID Sbjct: 121 ID 122 >gi|222148577|ref|YP_002549534.1| GTP-binding protein HFLX [Agrobacterium vitis S4] gi|221735563|gb|ACM36526.1| GTP-binding protein HFLX [Agrobacterium vitis S4] Length = 444 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 11/171 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + + ++ DT G + Sbjct: 208 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPQGRTVILSDTVGFISD 267 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA-------KRSSRLIL 135 ++ R + + AD++ V D + + D+++ ++ +R R+I Sbjct: 268 LPTHLVAAFRATLEEVLEADLILHVRDMADPDNGAQAGDVMRILSDLGIDEKERDERIIE 327 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + NKID ++PE QA IA K + VSA G G D ++ + L Sbjct: 328 VWNKIDRLEPE--AHQA-IAEKATGRQNVMAVSAVTGEGVDALMAEIAQRL 375 >gi|150396315|ref|YP_001326782.1| HSR1-like GTP-binding protein [Sinorhizobium medicae WSM419] gi|150027830|gb|ABR59947.1| GTP-binding protein HSR1-related [Sinorhizobium medicae WSM419] Length = 465 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 31/239 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 230 IVALVGYTNAGKSTLFNRMTGAGVLAEDMLFATLDPTLRRLKLPHGRMVILSDTVGFISD 289 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA-------KRSSRLIL 135 ++ R + + AD++ V D S + + D+L+ ++ + + R++ Sbjct: 290 LPTHLVAAFRATLEEVLEADLILHVRDLSDPDNQAQASDVLRILSDLGIDEKEGAERIVE 349 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL----------CS- 184 + NKID V+PE + + K ++ T VSA G G ++L + C+ Sbjct: 350 VWNKIDKVEPE---VREVLVKKAASVDNTVAVSAMTGEGVGELLTEIGRRLSGVMTECTI 406 Query: 185 -----TLPLAPWVYS---ADQISDLPMFHFTAEIT-REKLFLHLHKEIPYSSCVVTEKW 234 L PWVY D DL + ++ E + L + + V E W Sbjct: 407 VLGLDQLQFLPWVYQHAIVDAREDLEDGRVSLDLRLTEGEAVELERRLGNGPKAVEEDW 465 >gi|312622952|ref|YP_004024565.1| ribosome-associated GTPase enga [Caldicellulosiruptor kronotskyensis 2002] gi|312203419|gb|ADQ46746.1| ribosome-associated GTPase EngA [Caldicellulosiruptor kronotskyensis 2002] Length = 440 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 15/167 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL NR +G + +IV TR + G + +DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPY 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILN 138 ++D K M R + I +D++ +VD K + D +E+A R+S+ ++L +N Sbjct: 64 SEDIILKQMRRQAQFAIDMSDVIIFMVDG----KTGLTDADREVANMLRASKKPIVLAVN 119 Query: 139 KIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 KID + + ++ E E+ + +SA G G DVL+ + + Sbjct: 120 KIDNISQQAMIYEFYELG-----LSDPIAMSAEHGAGVGDVLDAVVN 161 Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 10/157 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+LVN +G + IV+ TTR + + I +DT G+ Sbjct: 178 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEGIPITLIDTAGLRRKS 237 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + M+R + I+ +DI +++D + + + I+ +NK Sbjct: 238 KIYDNVERYSMLR-TLQAIERSDICIILLDGTENVSEQDAKVAGYAYEAGKGCIVAVNKW 296 Query: 141 DCV-KPERLLEQ--AEIANKLVFIE--KTFMVSATKG 172 D V K E+ ++ +I KL F++ +SA G Sbjct: 297 DAVEKDEKTADEFKKQIEEKLSFLKFAPVLFISAKTG 333 >gi|298246134|ref|ZP_06969940.1| ribosome-associated GTPase EngA [Ktedonobacter racemifer DSM 44963] gi|297553615|gb|EFH87480.1| ribosome-associated GTPase EngA [Ktedonobacter racemifer DSM 44963] Length = 474 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 24/181 (13%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--- 80 VA+VG N GKST NR +G +V+IV TTR + G + +DT G+ Sbjct: 4 LVAIVGRPNVGKSTFFNRMIGERVAIVEDMPGTTRDRLYGDADWNGREFTLIDTGGLELG 63 Query: 81 -----------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEI 126 + D +M + + I+ AD++ +VD+ + + DLL+ Sbjct: 64 TGIPVGQVGLTGQSGDIMDHVMSQAQLA-IEEADVIVFMVDARSGITAADDEVADLLRRR 122 Query: 127 AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 A + +IL NK D ER L+ E + L E T +S+ +G G D+L+ + L Sbjct: 123 ATKP--VILAANKADNA--ERRLDVVEFYS-LGLGEPT-DISSIQGTGTGDLLDRIVEAL 176 Query: 187 P 187 P Sbjct: 177 P 177 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKS+L+N +G SIV+ TTR + + + +I +DT GI Sbjct: 193 IAIVGRPNVGKSSLLNAILGVNRSIVSDIPGTTRDAIDTELEFGDQKIKLVDTAGIRRRG 252 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + S I+ D+ +++D+ L + I + +I+++NK D Sbjct: 253 RVGVGVEKYSVLRSTRAIERCDVALMLIDASEGLTAQDTHIAGTIHEMGKGVIVVVNKWD 312 Query: 142 CV-------------KPERLLEQAEIANKLVFIEKTFMVSA 169 KP+ ++ AE K++ E F+ A Sbjct: 313 LAQEQHKAEREGEFPKPDEEIDDAERYRKMLIRELKFIPYA 353 >gi|94495668|ref|ZP_01302248.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58] gi|94425056|gb|EAT10077.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58] Length = 456 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 21/178 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV---------RGIVSEKESQIVFL 75 +A+VG NAGKSTL+NR +G + + TR + G+ E + + Sbjct: 188 LAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWSWTSREGL----ERPVRLI 243 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ +D KL + + + A++V L++DS R L+ + ++ + Sbjct: 244 DTAGMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLLLDSTRGLEAQDLRIADKVLEEGRA 303 Query: 133 LILILNKIDCVKPERLLEQA---EIANKLVFIEKT--FMVSATKGHGCDDVLNYLCST 185 L++ LNK D V L Q +++ L + VSA G G DD+++ T Sbjct: 304 LVIALNKWDTVDNGSALYQGIKQALSDGLAQVRGVPIMTVSAATGKGLDDLIHVAFET 361 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 13/168 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V + TR G +DT G + Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGEAHLLGLDFTIIDTAGYEDE 63 Query: 84 KDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK----RSSRLILILN 138 +R+ + + + + D+ +VD+ + I L +EIA+ + ++L+ N Sbjct: 64 DPQSLPGRMRIQTEAAVDNCDVALFLVDA----RAGITPLDEEIARWLREGDAPVVLVAN 119 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K + R E + + + + SA G G D+ L L Sbjct: 120 KAEG----RASEGGVMEAFGLGLGEPIPFSAEHGQGMADLFQALLPHL 163 >gi|172056213|ref|YP_001812673.1| small GTP-binding protein [Exiguobacterium sibiricum 255-15] gi|171988734|gb|ACB59656.1| small GTP-binding protein [Exiguobacterium sibiricum 255-15] Length = 350 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 8/144 (5%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKV-QTTRSI 60 E+ + +F +E +DF Q + VAL+G NAGKS+ +N +G +V+ V K +TTR Sbjct: 22 EVFDQSFESERRDFNQSLEQEVTVALIGDVNAGKSSTLNAILGREVATVGAKPGETTR-- 79 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-LKVNI 119 + I E ++VF+DTPG+ +A + L +W + AD++ +++ L Sbjct: 80 IDQIRQHPEDKVVFVDTPGLNDA----NSLNSDTTWKFYQSADVILYFLNAAGTVLSETE 135 Query: 120 HDLLKEIAKRSSRLILILNKIDCV 143 K+I + +++++ KID Sbjct: 136 TKNFKKIYAHNKNIVIVVTKIDAT 159 >gi|262374928|ref|ZP_06068162.1| ribosome-associated GTPase EngA [Acinetobacter lwoffii SH145] gi|262309941|gb|EEY91070.1| ribosome-associated GTPase EngA [Acinetobacter lwoffii SH145] Length = 469 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + + +DT GI Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGEN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDSYMAEQSKTAIHEADIIIFVVDARAGLLASDEQIARELRTLGKKVFLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPLQVAASHGRGVQQMLEDVLADVP 163 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 11/177 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTLVNR +G + + + TTR + Q +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVRRKG 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K I + +K A+++ +VVD+ + L+ + +++ +NK D Sbjct: 239 KVDEMIEKFSIVKTLQAMKDANVIVVVVDARDGIVEQDLHLIGYALEAGRAMVIAVNKWD 298 Query: 142 -CVKPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL-----NYLCSTLPLAP 190 + +R + ++ + FI K ++SA G G D+ Y S L ++P Sbjct: 299 NMTEYDRKQCKLDVERRFDFIPWAKVHLISALHGTGVGDLYPSIHRAYDSSRLKVSP 355 >gi|253997708|ref|YP_003049772.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8] gi|253984387|gb|ACT49245.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8] Length = 449 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 11/184 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L+N+ G +V+IVT TTR ++ + + +DT G+ Sbjct: 221 VVLVGQPNVGKSSLMNQLAGEEVAIVTAIAGTTRDTIKNAIQINGVPLHVIDTAGLRETD 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K I +W + A I L+VD+ + +L + ++ + + + NKID + Sbjct: 281 DEVEKFGIARTWRATETAHIALLLVDATHGITEVEKSILARLPQKIPK-VWVHNKIDVTQ 339 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 L+ + + A + +SA G G D + ++L L LA + +A+ + Sbjct: 340 EPALITEQDHAIHI-------YISAKTGVGVDLLKHHL---LQLAGYQNNAEGVFMARAR 389 Query: 205 HFTA 208 H +A Sbjct: 390 HLSA 393 >gi|122702647|emb|CAL88513.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ++ A + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNP 170 >gi|312794132|ref|YP_004027055.1| ribosome-associated gtpase enga [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877879|ref|ZP_07737825.1| ribosome-associated GTPase EngA [Caldicellulosiruptor lactoaceticus 6A] gi|311795342|gb|EFR11725.1| ribosome-associated GTPase EngA [Caldicellulosiruptor lactoaceticus 6A] gi|312181272|gb|ADQ41442.1| ribosome-associated GTPase EngA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 440 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 15/167 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL NR +G + +IV TR + G + +DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPY 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILN 138 ++D K M R + I +D++ +VD K + D +E+A R+S+ ++L +N Sbjct: 64 SEDIILKQMRRQAQFAIDMSDVIIFMVDG----KTGLTDADREVANMLRTSKKPIVLAVN 119 Query: 139 KIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 KID + + ++ E E+ + +SA G G DVL+ + + Sbjct: 120 KIDNISQQAMIYEFYELG-----LSDPIAMSAEHGTGVGDVLDAVVN 161 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+LVN +G + IV+ TTR + + I +DT G+ Sbjct: 178 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTFEFEGIPITLIDTAGLRRKS 237 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + M+R + I+ +DI +++D ++ + + I+ +NK Sbjct: 238 KIYDNVERYSMLR-TLQAIERSDICIILLDGTEDVSEQDAKVAGYAYEAGKGCIVAVNKW 296 Query: 141 DCV-KPERLLEQ--AEIANKLVFIE--KTFMVSATKG 172 D V K E+ ++ +I KL F++ +SA G Sbjct: 297 DAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTG 333 >gi|242255880|gb|ACS88924.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR ++ I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIVITSDFAGTTRDINKRKIALNSHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G + +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGINALIDAILSTLNL 168 >gi|229106078|ref|ZP_04236691.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-28] gi|228677344|gb|EEL31608.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-28] Length = 326 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 86 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 145 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L +L + A + I+I+NK Sbjct: 146 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEELFR--AVQGKDFIVIVNK 203 Query: 140 ID---CVKPERLLEQA 152 D + ER+ E A Sbjct: 204 TDLPQVIDMERVTELA 219 >gi|83649688|ref|YP_438123.1| tRNA modification GTPase TrmE [Hahella chejuensis KCTC 2396] gi|123529917|sp|Q2S6M6|MNME_HAHCH RecName: Full=tRNA modification GTPase mnmE gi|83637731|gb|ABC33698.1| tRNA modification GTPase TrmE [Hahella chejuensis KCTC 2396] Length = 454 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ ++ Sbjct: 218 TVVIAGRPNAGKSSLLNALAGRESAIVTEIEGTTRDVLREHIHIDGMPLHIVDTAGLRDS 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 D K+ I +W I AD + +VD+ + +V+ + E R + ++ NKI Sbjct: 278 DDVVEKIGIERAWKEIDQADRILFLVDATQTNEVSPERIWPEFYARIEHHDHITVVRNKI 337 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D L E+A+ L +SA G+G D + +L Sbjct: 338 D------LSEEAQ-GIDLSLSHPVIRLSAKAGNGIDVLREHL 372 >gi|56697187|ref|YP_167551.1| GTP-binding protein EngA [Ruegeria pomeroyi DSS-3] gi|81676219|sp|Q5LR04|DER_SILPO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56678924|gb|AAV95590.1| GTP-binding protein EngA [Ruegeria pomeroyi DSS-3] Length = 487 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGQARLGDLRFTVIDTAGLETA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DS M RL+ + ADI ++D+ + N + +RS+ +IL Sbjct: 64 TDDSLQGRMRRLTERAVDMADICLFMIDARAGVTPNDEIFADILRRRSAHVIL 116 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+NR +G + + TR + + ++ + DT G+ Sbjct: 205 VAVVGRPNAGKSTLINRILGEDRLLTGPEAGITRDAISLQIDWNDTPMRIFDTAGMRKKA 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R ++I +NK Sbjct: 265 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVVIAVNK 322 Query: 140 IDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD 176 D K ++L E E +L+ + VSA G G + Sbjct: 323 WDVEENKQDKLRELKESFERLLPQLRGAPLVTVSAKTGRGLE 364 >gi|300857411|ref|YP_003782395.1| putative tRNA modification GTPase [Clostridium ljungdahlii DSM 13528] gi|300437526|gb|ADK17293.1| predicted tRNA modification GTPase [Clostridium ljungdahlii DSM 13528] Length = 460 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 6/117 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N + +IVT TTR ++ ++ I +DT GI +D Sbjct: 229 IVGKPNVGKSSLLNSLIRENRAIVTDVPGTTRDVIEEYMNIDGIPIKVIDTAGIRETEDL 288 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKID 141 K+ + S I AD+V L++DS EL D KEI + + I++LNKID Sbjct: 289 VEKIGVERSKQKIDEADLVILMLDSSEEL----DDEDKEIMNYVKDKKYIILLNKID 341 >gi|242255828|gb|ACS88898.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDVKSIPSDENLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|122700609|emb|CAL87893.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRTLNL 168 >gi|21672650|ref|NP_660717.1| GTPase ObgE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009591|sp|Q8K9G1|OBG_BUCAP RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|21623286|gb|AAM67928.1| hypothetical 43.3 kd GTP-binding protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 333 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 79/175 (45%), Gaps = 22/175 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +G NAGKSTLV GAK I + TT + V G V+ + + + D PGI Sbjct: 162 VGTLGMPNAGKSTLVKSISGAKTKIANYPF-TTLNPVLGSVNTEGKKFIIADIPGIMQNA 220 Query: 85 DSYHKLMIRLSWSTIKHAD-------IVCLVVDSHRELKVNIHDLLKEIAKRSSRLI--- 134 L +R +KH + IV L H NI +L E+ K ++ L Sbjct: 221 SQGFGLGVRF----LKHLERCKILLHIVDLCPTDHSNPVENIRIILNELKKYNTSLYNKP 276 Query: 135 --LILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHG----CDDVLNYL 182 LILNKID +K E +I N L E+ +++S+ K G C D+ YL Sbjct: 277 RWLILNKIDLIKSSEIKKIIDKIKNFLKVEERFYLISSIKKIGVKKLCSDIAFYL 331 >gi|149019612|ref|ZP_01834931.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72] gi|147930987|gb|EDK81967.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72] gi|301794153|emb|CBW36563.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV104] gi|332202879|gb|EGJ16947.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47901] Length = 457 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K A++V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEANLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|148994246|ref|ZP_01823539.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68] gi|168488838|ref|ZP_02713037.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195] gi|147927387|gb|EDK78418.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68] gi|183572349|gb|EDT92877.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195] gi|332073349|gb|EGI83828.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17570] Length = 457 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 221 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S +K A++V LV+++ L LL EI++ ++R+IL LNK Sbjct: 281 IRETDDIVEQIGVERSKKALKEANLVLLVLNASEPLTAQDRQLL-EISQDTNRIIL-LNK 338 Query: 140 IDCVKPE 146 D PE Sbjct: 339 TDL--PE 343 >gi|152977683|ref|YP_001377200.1| tRNA modification GTPase TrmE [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189036194|sp|A7GVP7|MNME_BACCN RecName: Full=tRNA modification GTPase mnmE gi|152026435|gb|ABS24205.1| tRNA modification GTPase TrmE [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 8/177 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLRLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L +L + A + I+I+NK Sbjct: 278 IRETEDIVEQIGVERSKEMMSQADLVLIVVNYSEPLTNEDEELFR--AVQGKDFIVIVNK 335 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D P+++ + E +L ++ S + G D+ L + L + SAD Sbjct: 336 TDL--PQKI--EMERVTELASEKRVITTSLIEEKGVDE-LEKAIADLFFEGTIESAD 387 >gi|332140453|ref|YP_004426191.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] gi|332141960|ref|YP_004427698.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] gi|238693251|sp|B4RV85|DER_ALTMD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|327550475|gb|AEA97193.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] gi|327551982|gb|AEA98700.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] Length = 481 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 14/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G ++ Q + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEKRQFIVVDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ M + S I+ AD+V +VD+ L I D L+ I K ++ ++ NK+ Sbjct: 64 EEGIDAEMAQQSLLAIEEADVVLFLVDARAGLLPADQGIADHLRRINK---QIFVVANKV 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD----DVLNYLCSTLP 187 D + + E AE + + + ++A G G D L L S P Sbjct: 121 DGIDGDS--ESAEFYS--LGLGAIKQIAAAHGRGVSQLLQDALKPLESDFP 167 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR V + E + + +DT G+ K Sbjct: 196 LAIVGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYIPMERDEREYILIDTAGVRKRK 255 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K I + I+ A++V LV+D+ + LL + L++ +NK D Sbjct: 256 KISEAVEKFSIVKTLQAIEEANVVLLVIDAREGITDQDLSLLGFVLNSGRSLVVAVNKWD 315 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + + E+ +L FI+ + +SA G G ++ Y+ +T Sbjct: 316 GLSTDIKDDIKREMDRRLGFIDFARIHFISALHGSGVGNLFESVQEAYMSAT 367 >gi|154300747|ref|XP_001550788.1| hypothetical protein BC1G_10673 [Botryotinia fuckeliana B05.10] gi|150856421|gb|EDN31613.1| hypothetical protein BC1G_10673 [Botryotinia fuckeliana B05.10] Length = 525 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 17/143 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +AL+G NAGKS+L+N+ VG + SIV+ + TTR IV + + F DT G+ Sbjct: 244 IALLGPPNAGKSSLLNQIVGREASIVSQEAGTTRDIVEVGLDIRGYLCTFADTAGLRTQA 303 Query: 81 ----FNAKDS----YHKLMIRLSWSTIKHADIVCLVV-----DSHRELKVNIHDLLKEIA 127 DS + IR + S +D++ + D ++ EIA Sbjct: 304 SQIGSGNNDSIIGDIEREGIRRAKSKANESDLIVALASIEWSDIRNGWEIRYDQETFEIA 363 Query: 128 KRSSRLILILNKIDCVKPERLLE 150 R+S+ ++++NK D V PE L E Sbjct: 364 ARASKFMIVINKSDSVTPEILSE 386 >gi|122702189|emb|CAL88285.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDLNP 170 >gi|122701625|emb|CAL88202.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNTLDL 168 >gi|84394513|ref|ZP_00993223.1| tRNA modification GTPase [Vibrio splendidus 12B01] gi|84374866|gb|EAP91803.1| tRNA modification GTPase [Vibrio splendidus 12B01] Length = 453 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + D+ + R + + +I NK D Sbjct: 278 DEVEKIGIERAWEEIAQADRVLFMVDGTTTDATDPKDIWPDFVDRLPDNIGMTVIRNKAD 337 Query: 142 CVKPE 146 E Sbjct: 338 QTSEE 342 >gi|323141760|ref|ZP_08076630.1| ribosome biogenesis GTPase Der [Phascolarctobacterium sp. YIT 12067] gi|322413749|gb|EFY04598.1| ribosome biogenesis GTPase Der [Phascolarctobacterium sp. YIT 12067] Length = 442 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG--IF 81 VA+VG N GKSTL N F +++SIV TR + + + + +DT G I Sbjct: 5 IVAIVGRPNVGKSTLFNIFANSRISIVEDTPGVTRDRLYATAEWLDHEFMMVDTGGIEIM 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 NA D+ + + + IK AD++ V D+ + D+ + + + ++L +NK D Sbjct: 65 NA-DAIAVSIRQQAQIAIKEADVILFVCDARAGITTEDADVARLLRQSKKPIVLAVNKAD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P++ + E N + I VSA+ G D+L+ + + P Sbjct: 124 S--PKQEMNTFEFYN--LGIGDPIAVSASNHLGLGDLLDAVVAKFP 165 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 11/170 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VAL+G N GKS++ N VG + SIV+ TTR + V + +F+DT G+ Sbjct: 181 VALIGRPNVGKSSIFNALVGEERSIVSDIAGTTRDAIDTPVVRNGQKYLFIDTAGMRRKA 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + S + +D+V +V D+ + ++ + +IL++NK D Sbjct: 241 KVDEPIEKYSVMRSLRAVDRSDVVLMVFDAVEGVTEQDKRIVGYAHEAGKAVILVVNKWD 300 Query: 142 CVKPER--LLEQAEIANK-LVFIEKT---FMVSATKG--HGCDDVLNYLC 183 + + L E K LVF++ F+ + TK H +V++Y+ Sbjct: 301 LYEKDNSSTLRYTETLRKELVFLQYAPVVFVSAVTKQRIHRLPEVISYVA 350 >gi|122701563|emb|CAL88171.1| GTPase [Helicobacter pylori] gi|122702643|emb|CAL88511.1| GTPase [Helicobacter pylori] gi|122702877|emb|CAL88628.1| GTPase [Helicobacter pylori] gi|242255820|gb|ACS88894.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|330994712|ref|ZP_08318635.1| GTPase Der [Gluconacetobacter sp. SXCC-1] gi|329758353|gb|EGG74874.1| GTPase Der [Gluconacetobacter sp. SXCC-1] Length = 467 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL+NR +G + I + TR + ++S+ E I +DT G+ Sbjct: 203 LAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSIAVMLSDDEGPIQLVDTAGLRRKA 262 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 ++ K+ + S +K A++V LV+D+ L V+ DL + + +R R +L LNK Sbjct: 263 RIDETLEKMSVSASIEALKMAEVVILVLDAT--LGVHEQDLQIARLIEREGRCCVLALNK 320 Query: 140 IDCVK 144 D V+ Sbjct: 321 WDAVE 325 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 11/168 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 V + G N GKST+ NR VG + ++V TR G + + I +DT G+ Sbjct: 6 VVVIAGRPNVGKSTIFNRLVGRRQALVADTPGVTRDRKEGQATVRGRNIRIIDTAGLEEA 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A D+ + M S S + HAD+V +D+ + + ++ ++LI NK + Sbjct: 66 APDTLYGRMRASSESAVAHADLVLFCIDARSGITPADQHFANWLRRQGRPVLLIANKAEG 125 Query: 143 VKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLP 187 Q A F + +SA G G D++ + LP Sbjct: 126 -------RQGAAAAMEAFSLGLGAPLAISAEHGEGVADLMAEIVDRLP 166 >gi|169797809|ref|YP_001715602.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AYE] gi|205829063|sp|B0V5S5|MNME_ACIBY RecName: Full=tRNA modification GTPase mnmE gi|169150736|emb|CAM88648.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Acinetobacter baumannii AYE] Length = 454 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 206 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 266 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEH 325 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 326 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 376 Query: 186 LPLAP 190 P Sbjct: 377 AGFHP 381 >gi|187930816|ref|YP_001901303.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J] gi|309780188|ref|ZP_07674939.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA] gi|187727706|gb|ACD28871.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J] gi|308920891|gb|EFP66537.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA] Length = 481 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 213 GQLANIRTAVDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 272 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 TR V+ + + + +DT G+ + +D ++ I +W+ I AD+V ++D+ Sbjct: 273 TRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDA 327 >gi|308183548|ref|YP_003927675.1| tRNA modification GTPase TrmE [Helicobacter pylori PeCan4] gi|308065733|gb|ADO07625.1| tRNA modification GTPase TrmE [Helicobacter pylori PeCan4] Length = 450 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELKGHKVRLIDTAGIRESADRIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LMDTLNRAKKPCIVVLNKND 332 >gi|308189713|ref|YP_003922644.1| GTP-binding protein [Mycoplasma fermentans JER] gi|319776899|ref|YP_004136550.1| gtp-binding protein enga [Mycoplasma fermentans M64] gi|238809685|dbj|BAH69475.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624455|gb|ADN68760.1| GTP-binding protein [Mycoplasma fermentans JER] gi|318037974|gb|ADV34173.1| GTP-binding protein engA [Mycoplasma fermentans M64] Length = 435 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+ +A++G N GKSTL NR +G + SI+ + TR + S +I +DT GI Sbjct: 2 RNNVIAIIGKPNVGKSTLFNRLIGKRSSIIYDRPGVTRDRLYETFSWNGKEIKVIDTGGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + + I+ A+++ +VD ++ + + + K ++++ NK+ Sbjct: 62 EIENRPFQEHIQIQAKIAIEEANVIIFMVDGASDITNDDLMIYSMLQKSGKPIVVVANKL 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D + Q + + ++ F +SA G+G DVL+ Sbjct: 122 DNI------SQFNYSWYSLGVDHIFPISAQHGNGVGDVLD 155 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 ++++G N+GKS+++NR SIV+ TTR V+ IV K+ +DT GI Sbjct: 174 LSIIGRPNSGKSSMLNRLANENRSIVSDIAGTTRDSVKSIVKIKDEVFEIIDTAGITRKS 233 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +DS ++ + S++ +++ +++DS +EL ++ + +I+++NK D Sbjct: 234 KIEDSVDHYALKRAMSSLDESNLSLVLIDSTQELSHFDSRIIGYALDNNKPIIIVVNKWD 293 Query: 142 CVKPE 146 + E Sbjct: 294 LINKE 298 >gi|190171272|gb|ACE63706.1| ThdF [Cronobacter malonaticus] gi|190171274|gb|ACE63707.1| ThdF [Cronobacter malonaticus] gi|190171278|gb|ACE63709.1| ThdF [Cronobacter malonaticus] gi|190171280|gb|ACE63710.1| ThdF [Cronobacter malonaticus] gi|190171282|gb|ACE63711.1| ThdF [Cronobacter malonaticus] gi|190171284|gb|ACE63712.1| ThdF [Cronobacter malonaticus] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|167630055|ref|YP_001680554.1| GTP-binding protein [Heliobacterium modesticaldum Ice1] gi|238687893|sp|B0TFW3|DER_HELMI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167592795|gb|ABZ84543.1| GTP-binding protein [Heliobacterium modesticaldum Ice1] Length = 442 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--F 81 VA+VG N GKSTL NR G +V+IV + TR + + + + +DT G+ Sbjct: 5 IVAIVGRPNVGKSTLFNRLTGGRVAIVEDQPGVTRDRLYRDANWLDREFTVVDTGGLDFG 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI- 140 + ++ + ++ + + + ++ AD++ +VD + + + + K + L++NKI Sbjct: 65 DRENPFSAIIHKQAEAAMEEADVILFLVDGRSGITADDEAVAAILRKAKKPVFLVVNKIE 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + ER + + + + +SA+ G D+L+ + + LP Sbjct: 125 DFSQRERYFDFYSLG-----LGEPIPISASHGMNTGDLLDAVVAVLP 166 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 7/149 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+LVN +G + IV+ TTR + + + +DT G+ Sbjct: 180 IAVIGRPNVGKSSLVNAILGQERVIVSDIPGTTRDAIDTAFDRDGKRYILIDTAGMRRKG 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ + + S I +D+V +V+D+ + + + + +L+LNK D Sbjct: 240 RIEEAVERYSVMRSLRAIDRSDVVLMVIDASQGVTEQDKKIAGYAHEAGKACVLVLNKWD 299 Query: 142 CV-KPERLLEQAEIANKLVFIEKTFMVSA 169 V K ++ + + +K+V E +F+ A Sbjct: 300 LVPKDDKTMSR---FDKVVRSEMSFLAYA 325 >gi|148377986|ref|YP_001256862.1| GTP-binding protein EngA [Mycoplasma agalactiae PG2] gi|238686669|sp|A5IZG5|DER_MYCAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148292032|emb|CAL59424.1| GTP binding protein engA [Mycoplasma agalactiae PG2] Length = 436 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 13/187 (6%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + +A++G N GKSTL NR VG + SI + TR + + +I +DT GI Sbjct: 2 KKNVIAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFTWNGKEINVIDTGGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + ++ + I+ A++V +VD + + + + K +I++ NK+ Sbjct: 62 QIEKKDFQDQILIQAKIAIEEANVVIFIVDGQAAITSDDKMIYSMLQKSGKPIIVVANKL 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + + + + + F +SA G+G DVL+ L + +D +S Sbjct: 122 DNI------SKFDYGWYSLGADHVFRISALHGNGIGDVLDQCLKYLN-----FDSDNVS- 169 Query: 201 LPMFHFT 207 P F + Sbjct: 170 -PYFKLS 175 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N+GKS+L+N SIV+ TTR V+ +V + +I +DT GI Sbjct: 174 LSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDGVKSVVELRGHKIEIIDTAGITRKS 233 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ L ++ + S++ +D+ ++++S REL ++ + + +I+ +NK D Sbjct: 234 KIDDTVEHLALKRAMSSLDESDLSIVLINSTRELAHFDARIIGYALENNKPIIICVNKWD 293 Query: 142 CV 143 + Sbjct: 294 LI 295 >gi|332521867|ref|ZP_08398316.1| tRNA modification GTPase TrmE [Lacinutrix algicola 5H-3-7-4] gi|332042539|gb|EGI78741.1| tRNA modification GTPase TrmE [Lacinutrix algicola 5H-3-7-4] Length = 464 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 12/157 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + + + F+DT GI K Sbjct: 226 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIEGIGFRFIDTAGIRETK 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-----LILILNK 139 D + I+ ++ ++ A +V L+ S E + L+ EI K +R L++I NK Sbjct: 286 DVVESIGIKKTFEKMEQAQVVILLF-SAEEFQTESQRLILEIEKIKNRFPLKPLVIIANK 344 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 ID + E E+ +K I+ ++SA G G + Sbjct: 345 IDTLNAS---ETEELKSK---IDNIHLLSAKSGIGVE 375 >gi|190171334|gb|ACE63737.1| ThdF [Cronobacter sakazakii] Length = 440 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 194 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 253 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 254 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 298 >gi|72383562|ref|YP_292917.1| GTP-binding protein EngA [Prochlorococcus marinus str. NATL2A] gi|123620367|sp|Q46H20|DER_PROMT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|72003412|gb|AAZ59214.1| Small GTP-binding protein protein domain:GTP-binding protein [Prochlorococcus marinus str. NATL2A] Length = 456 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 12/182 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G +++ ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCQSREAIVHDEPGVTRDRTYQDGFWRDRDFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + ++ A + ++VD + + + + RS + ++++NK Sbjct: 64 DDDSEFLPEIREQANLALEEAVVALVIVDGQEGITTADESIAEFLRSRSGKTLVVVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 C PE+ L A KL E + +SA G G D+L+ + + P D++SD Sbjct: 122 CESPEQGLAMAAQFWKLGLGEP-YPISAIHGVGTGDLLDQVVNLFP----SKDLDEVSDS 176 Query: 202 PM 203 P+ Sbjct: 177 PV 178 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N G +IV+ TTR + ++ + + +DT GI + Sbjct: 180 LAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTIDTRITHQGKEWKLVDTAGIRRRR 239 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I S+ I+ +D+ LV+D+ + L I + ++++NK D Sbjct: 240 SVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEQEGRACLIVINKWD 299 Query: 142 CVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHGCDDVL 179 V+ + A +I +KL F++ M+ SA G + + Sbjct: 300 AVEKDSHTMSAMEKDIRSKLYFLDWAQMIFTSAVTGQRVEGIF 342 >gi|299140501|ref|ZP_07033639.1| tRNA modification GTPase TrmE [Prevotella oris C735] gi|298577467|gb|EFI49335.1| tRNA modification GTPase TrmE [Prevotella oris C735] Length = 455 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 7/119 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TN GKSTL+N + +IV++ TTR ++ K F+DT GI K Sbjct: 225 VAIIGKTNVGKSTLLNCLLHEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRETK 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKID 141 D +L I ++ I A IV VVD E I L E +L+L+ NK+D Sbjct: 285 DVVEQLGIERAYKKIGEATIVLWVVDEQPTTEEYTEIQQLTAE-----KKLLLVFNKMD 338 >gi|319763709|ref|YP_004127646.1| ribosome-associated gtpase enga [Alicycliphilus denitrificans BC] gi|330824028|ref|YP_004387331.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans K601] gi|317118270|gb|ADV00759.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans BC] gi|329309400|gb|AEB83815.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans K601] Length = 447 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 8/179 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR ++ +IV TR G + + + + +DT G + Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGRQGKHEFIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A ++ M + + + AD+V VVD L HD+ K + + +L NK + Sbjct: 64 ASSGIYREMAKQTQQAVAEADVVIFVVDVRGGLSAQDHDIAKYLRRLGKPCVLAGNKAEG 123 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 ++ L E E+ + + VSA G G ++ +L L P D +++ Sbjct: 124 MQDSAHLAEFYELG-----LGEVHPVSAAHGQGVRSLVELALKSLAL-PEAGEGDVVAE 176 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTL+N ++G + + TTR + + +DT G+ Sbjct: 182 LAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAGLRRKG 241 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L++D+ + + + I + +++ +NK D Sbjct: 242 KVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVIAVNKWD 301 Query: 142 CV 143 V Sbjct: 302 AV 303 >gi|253755917|ref|YP_003029057.1| tRNA modification GTPase TrmE [Streptococcus suis BM407] gi|251818381|emb|CAZ56209.1| tRNA modification GTPase TrmE [Streptococcus suis BM407] Length = 457 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD++ LV+++ L +LL I+ ++R++L LNK Sbjct: 281 IRETDDIVEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLA-ISDMANRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|190171312|gb|ACE63726.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|190171246|gb|ACE63693.1| ThdF [Escherichia hermannii] Length = 438 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 192 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 251 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 252 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 296 >gi|212710611|ref|ZP_03318739.1| hypothetical protein PROVALCAL_01677 [Providencia alcalifaciens DSM 30120] gi|212686692|gb|EEB46220.1| hypothetical protein PROVALCAL_01677 [Providencia alcalifaciens DSM 30120] Length = 492 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + E + + +DT G+ Sbjct: 208 LAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRKRG 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++ +NK D Sbjct: 268 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNAGRSLVIAVNKWD 327 Query: 142 CVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +KP E + + E+ V + +SA G G ++ Sbjct: 328 GMKPEDREHVKDMLELRLGFVDFARIHFISALHGSGVGNLF 368 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 54/120 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R + L+ NK D + Sbjct: 64 EEGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGI 123 >gi|209964703|ref|YP_002297618.1| GTP-binding protein EngA [Rhodospirillum centenum SW] gi|209958169|gb|ACI98805.1| GTP-binding protein, putative [Rhodospirillum centenum SW] Length = 478 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 9/170 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R VA+VG N GKSTL NR VG ++++V TR G ++ +DT G+ Sbjct: 6 RRLTVAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDWRAGEARLAGIELTVVDTAGL 65 Query: 81 FNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 DS M R + I+ AD+ ++D+ + H + K + +IL+ NK Sbjct: 66 EEVFDDSLEARMRRQTERAIERADVALFLIDARAGVTPLDHHFAGWLRKGRTPVILVANK 125 Query: 140 IDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +P LLE E+ + + +SA G G D++ L P Sbjct: 126 AEGAAGRPG-LLEAFELG-----LGEPVPLSAEHGEGLADLVEALLPYEP 169 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL+N VG + + + TR + + + + +DT G+ Sbjct: 213 LAIVGRPNVGKSTLLNALVGEERVLTGPEAGMTRDAIAVEWNWRGQPVRLVDTAGLRRRA 272 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 KL + + I+ A +V LV+D+H L + + + + L++ +NK D Sbjct: 273 RVDGKLEKLAVADTLRVIRMAHVVVLVLDAHAILDKQDLTIARMVVEEGRALVIAINKWD 332 Query: 142 CVKP-----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 V+ ++L ++ E + V T +SA +G D++L+ Sbjct: 333 SVENKGAALKQLRDRLETSLPQVRGIPTVTISALRGQRLDELLD 376 >gi|122702613|emb|CAL88496.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISVLIDAILSALNLNP 170 >gi|330466447|ref|YP_004404190.1| gtp-binding proten hflx [Verrucosispora maris AB-18-032] gi|328809418|gb|AEB43590.1| gtp-binding proten hflx [Verrucosispora maris AB-18-032] Length = 480 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T R + + DT G Sbjct: 254 AVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRRATTSEGRVYTLSDTVGFV-- 311 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H+++ R + I AD+V VVD +E + ++L E+ +L++ Sbjct: 312 RHLPHQIVEAFRSTLEEIAEADLVVHVVDGTHPDPQEQVRAVREVLTEVGADRLPELLVV 371 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D E LL+ I + VF VSA G G DD+ + LP Sbjct: 372 NKTDAADEETLLQLKRIWPEAVF------VSAYSGRGIDDLRATIEQRLP 415 >gi|237736577|ref|ZP_04567058.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229420439|gb|EEO35486.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 406 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 8/135 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G TNAGKS+L+N+ +S+V+ + TT + + + +VF+DT GI + Sbjct: 12 IAIYGRTNAGKSSLINKITNQSISLVSETRGTTTDPVYKAMELLPIGPVVFIDTAGIDDT 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + +L ++ + + DI L++ + ++EL + ++EI KR I+ILN Sbjct: 72 TE-LGELRVKKTKEILNKMDIALLLISTEVVLENQELNYE-KEWIREIKKREKPFIVILN 129 Query: 139 KIDCVKPERLLEQAE 153 K+D V E+L E E Sbjct: 130 KVDLVSVEKLQEIEE 144 >gi|331269697|ref|YP_004396189.1| small GTP-binding protein [Clostridium botulinum BKT015925] gi|329126247|gb|AEB76192.1| small GTP-binding protein [Clostridium botulinum BKT015925] Length = 438 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G +++IV TR + ++ +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAQAEWLNNKFTIIDTGGIEPES 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M R + I+ AD+V +VD + L ++ + + K + ++L +NKID Sbjct: 66 EDVIVAQMRRQAQMAIEMADVVLFIVDGKQGLADADREVAQMLRKANKSIVLAVNKIDRH 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + + +S+++G G D+L+ + P Sbjct: 126 QLDDNI--YEFYN--LGLGDPMAISSSQGLGLGDLLDEVVDKFP 165 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+L+NR +G + IV++ TTR V + +E + +DT G+ Sbjct: 179 IAMVGRPNVGKSSLINRILGEEKHIVSNIPGTTRDSVDSYIEREEGKFALIDTAGLRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++I++AD+ L++D+ + + ++ + + +++I+NK D Sbjct: 239 KIKEQVERYSAVRTIASIENADVCILMLDAEQGIAEQDEKIIGYAHELNKAIMVIVNKWD 298 Query: 142 CVKPE 146 ++ + Sbjct: 299 LIEKD 303 >gi|193078405|gb|ABO13382.2| tRNA modification GTPase [Acinetobacter baumannii ATCC 17978] Length = 451 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 203 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 263 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEH 322 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 323 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 373 Query: 186 LPLAP 190 P Sbjct: 374 AGFHP 378 >gi|157826149|ref|YP_001493869.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford] gi|166234814|sp|A8GPN6|MNME_RICAH RecName: Full=tRNA modification GTPase mnmE gi|157800107|gb|ABV75361.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford] Length = 445 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 83/147 (56%), Gaps = 10/147 (6%) Query: 10 NEHKDFVQDNSR-----SGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 NE +++ DN R SG +A+VG N GKS+L+N + +++V++ TTR I+ G Sbjct: 197 NEISNYLNDNRRGELLNSGLKLAIVGPPNTGKSSLLNFLMQRDIAMVSNIAGTTRDIIEG 256 Query: 64 IVSEKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + I+ DT GI + D + I+ + ++ K ADI ++ D+ ++L +I++ Sbjct: 257 HLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKIIMFDA-KKLDSSINED 315 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLL 149 + + ++ I+I+NKID ++P ++ Sbjct: 316 ITGLIDENT--IVIINKIDLIEPSKVF 340 >gi|329904164|ref|ZP_08273694.1| GTP-binding protein HflX [Oxalobacteraceae bacterium IMCC9480] gi|327548120|gb|EGF32838.1| GTP-binding protein HflX [Oxalobacteraceae bacterium IMCC9480] Length = 373 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 13/159 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A+V T + R + +V DT G Sbjct: 191 SVSLVGYTNAGKSTLFNTMCKARVYAADQLFATLDTTSRRVYMGDAGNVVLSDTVGFI-- 248 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILIL 137 ++ H+L+ R + HAD++ VVD+ ++ ++++LKEI IL+ Sbjct: 249 RELPHQLVAAFRATLEETVHADLLLHVVDAASPNRMEQIEQVNNVLKEIGADHIPQILVW 308 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID E LE+ E I + F VSA G G D Sbjct: 309 NKIDAAGLEPALERDEYDK----IRRVF-VSAQSGLGVD 342 >gi|237756509|ref|ZP_04585039.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense SS-5] gi|237691325|gb|EEP60403.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense SS-5] Length = 267 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 49/87 (56%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L N VG + +IV+ TTR + + K+ ++ LDT G+ + + Sbjct: 38 LAIVGRPNVGKSSLFNALVGYERAIVSEIQGTTRDFIEESLKIKDIPVILLDTAGLRDTE 97 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ I + I ADI+ V+D+ Sbjct: 98 DKIEKIGIEKAQEKINEADIILFVIDA 124 >gi|210135618|ref|YP_002302057.1| tRNA modification GTPase TrmE [Helicobacter pylori P12] gi|210133586|gb|ACJ08577.1| thiophene/furan oxidation protein [Helicobacter pylori P12] Length = 461 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 3/142 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 204 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 263 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 264 EEVIELKGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 323 Query: 122 LLKEIAKRSSRLILILNKIDCV 143 L+ + + I++LNK D V Sbjct: 324 LIDTLNRAKKPCIVVLNKNDLV 345 >gi|122701527|emb|CAL88153.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLNL 168 >gi|329894824|ref|ZP_08270624.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC3088] gi|328922718|gb|EGG30052.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC3088] Length = 460 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 5/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVGA NAGKS+L+N+ G +IVT TTR + +V+ K + F+DT G+ Sbjct: 224 VALVGAPNAGKSSLLNQLCGLDKAIVTDIPGTTRDTLETVVNIKGVPVTFIDTAGLRLTD 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLL-KEIAKR--SSRLILILNK 139 D + I+ + +T++ A +V ++D+ E V++ LL +A+ + I + NK Sbjct: 284 DVIEQAGIQRAVNTLERAQLVLFLMDASATSEQSVSLFTLLPSNLAEACLAHPFIGVSNK 343 Query: 140 IDCV 143 ID + Sbjct: 344 IDLL 347 >gi|299133863|ref|ZP_07027057.1| GTP-binding proten HflX [Afipia sp. 1NLS2] gi|298591699|gb|EFI51900.1| GTP-binding proten HflX [Afipia sp. 1NLS2] Length = 464 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 73/170 (42%), Gaps = 7/170 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R + + + DT G + Sbjct: 230 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRALKLPHGGKAMISDTVGFISD 289 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEI---AKRSSRLILI 136 + R + + AD++ V D SH + + D +L+++ RLI + Sbjct: 290 LPTMLVAAFRATLEEVIEADVILHVRDISHEDAEAQERDVDQVLRQLNIDTDSGHRLIEV 349 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID PE A IA + F+VSA G G + +L + L Sbjct: 350 WNKIDRFSPEERENLARIAARRPPERPCFLVSAETGEGVEALLEAIEERL 399 >gi|262189625|ref|ZP_06048013.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae CT 5369-93] gi|262034492|gb|EEY52844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae CT 5369-93] Length = 242 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 7 VVIAGRPNAGKSSLLNVLSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 66 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D+ K+ I +W I+ AD V +VD Sbjct: 67 DAVEKIGIERAWEEIRQADRVLFMVDG 93 >gi|229020710|ref|ZP_04177436.1| tRNA modification GTPase mnmE [Bacillus cereus AH1273] gi|229026925|ref|ZP_04183248.1| tRNA modification GTPase mnmE [Bacillus cereus AH1272] gi|228734383|gb|EEL85054.1| tRNA modification GTPase mnmE [Bacillus cereus AH1272] gi|228740586|gb|EEL90858.1| tRNA modification GTPase mnmE [Bacillus cereus AH1273] Length = 458 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L +L + A + I+I+NK Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALTNEDEELFR--AVQGKDFIIIVNK 335 Query: 140 IDC---VKPERLLEQA 152 D + ER+ E A Sbjct: 336 TDLPQEIDMERVTELA 351 >gi|190171332|gb|ACE63736.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|225620645|ref|YP_002721903.1| putative GTP-binding protein [Brachyspira hyodysenteriae WA1] gi|225215465|gb|ACN84199.1| putative GTP-binding protein [Brachyspira hyodysenteriae WA1] Length = 501 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR--SIVRGIVSEKESQIVFLDTPGIFN 82 +A++G N GKSTL NRF G + SIV TR SI + + + E + DT G+ + Sbjct: 4 IAILGRPNVGKSTLFNRFAGRRKSIVDPMAGVTRDISIAKTYIDDIEFNV--FDTGGLLD 61 Query: 83 AKDSYHKLMIRLSW--STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D +R + ++ +DI+ +VD+H+ + H + I K +IL++NK+ Sbjct: 62 VSDDTLNEKVREKALKTALEDSDILLFLVDAHQSHPDDRH-FINIIRKSGKPIILVINKV 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D L+ + + I+ ++SA +G DD+ Sbjct: 121 DADSHNNLVSEF----YSLGIKDVSIISAEHNNGIDDL 154 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A+VG NAGKSTL+N +G SIV++ TTR + + K I +DT GI Sbjct: 240 IAIVGKPNAGKSTLLNTLIGKDRSIVSNIAGTTRDAIDETFNFKGDDICLVDTAGIRKKK 299 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N + + I+ +D+ L++D L + I +R +++ NK D Sbjct: 300 NVNTDVEYYSVNRAIKAIEASDVCILMLDVFEGLTDQDKTIANLIIERRKGIVIAANKWD 359 >gi|221632763|ref|YP_002521985.1| GTP-binding protein EngA [Thermomicrobium roseum DSM 5159] gi|254783175|sp|B9KZ43|DER_THERP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221155859|gb|ACM04986.1| ribosome-associated GTPase EngA [Thermomicrobium roseum DSM 5159] Length = 460 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 19/174 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL NR + + +IV TTR + GIV + + DT G+ + Sbjct: 6 VAIVGRPNVGKSTLFNRLLRQRRAIVEEVPGTTRDRIYGIVEWNDLRFGLFDTGGLLTEE 65 Query: 85 DSYHKLMIRLSWST-------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 + L +T I AD+V VVD+ ++ + + ++L+ Sbjct: 66 EIERSSERELVEATKAQAELAIAEADLVIFVVDASAGPTAGDWEVADFLRRTDKPILLVA 125 Query: 138 NKIDCVKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLP 187 NK + + E N L F E VSA G G D+L+ + LP Sbjct: 126 NKAESRERE--------FNALQFYELGLGDPIPVSALHGRGIADLLDAIAERLP 171 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS L+N +G IV+ TTR V + K IV +DT GI Sbjct: 186 IAIVGRPNVGKSALLNAILGQPRQIVSPIPGTTRDAVDTELVWKGQPIVLIDTAGIRRPG 245 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I + I+ +D+ LVVD+ + ++ +++ +NK D Sbjct: 246 RIERGIERYSILRAERAIERSDVAILVVDATEPFTHQDQAVAGKVLDAKKGIVVAINKWD 305 Query: 142 C 142 Sbjct: 306 L 306 >gi|122701523|emb|CAL88151.1| GTPase [Helicobacter pylori] gi|122701525|emb|CAL88152.1| GTPase [Helicobacter pylori] gi|122701531|emb|CAL88155.1| GTPase [Helicobacter pylori] gi|122702611|emb|CAL88495.1| GTPase [Helicobacter pylori] gi|122702773|emb|CAL88576.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLNL 168 >gi|118594978|ref|ZP_01552325.1| GTP-binding protein EngA [Methylophilales bacterium HTCC2181] gi|118440756|gb|EAV47383.1| GTP-binding protein EngA [Methylophilales bacterium HTCC2181] Length = 474 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 8/184 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + +VG N GKSTLVN VG + IV + TTR V + V DT GI Sbjct: 178 ITIVGRPNVGKSTLVNALVGEERFIVFDQAGTTRDAVSVDFDFNGDRFVLTDTAGIRKKG 237 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + + ++ +D++ LV+DS + L+ I + +++ +NK D Sbjct: 238 KVFETVEKFSVLKTLAAVESSDVIILVIDSSGGIATQDMHLIGFILETGKSIVIAINKWD 297 Query: 142 CVKP-ERLLEQAEIANKLVFI---EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 V ER + +I KL F+ EK F +SA K G ++ + + +S Q Sbjct: 298 SVSAYEREAIKNDIDLKLPFVNFAEKVF-ISALKETGLKGLMRSVIKAYESSSRKFSTPQ 356 Query: 198 ISDL 201 I+++ Sbjct: 357 INEV 360 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+L NR ++ ++V TR G ++ +++Q + +DT G Sbjct: 3 SVAIVGRPNVGKSSLFNRLTKSRDALVADLPGLTRDRHYGKITIEDAQFILVDTGGFEPK 62 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K K M + I D++ VVD L + I K IL++NK + Sbjct: 63 KKIGIAKKMALQTLLAIDECDVILFVVDGREGLHPIDQHIADVIRKNDKEKILLINKTEG 122 Query: 143 VKPE 146 ++ E Sbjct: 123 MQHE 126 >gi|160872053|ref|ZP_02062185.1| tRNA modification GTPase TrmE [Rickettsiella grylli] gi|159120852|gb|EDP46190.1| tRNA modification GTPase TrmE [Rickettsiella grylli] Length = 462 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 12/163 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKS+L+NR + SIVT TTR ++R + + I +DT G+ Sbjct: 225 LAIVGPPNAGKSSLLNRLSLKEASIVTSFAGTTRDVIREKIQIEGLLIHIVDTAGLRITI 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI-----HDLLKEIAKRSSRLILILNK 139 D K I+ + + I A+++ VVD + ++ +L + +R+++I NK Sbjct: 285 DEIEKEGIKRTLAEIAKANLILWVVDHNTTRHEDLIFWKEQELFLKNIFLDNRILIIRNK 344 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 ID + E A I +L F +SA G G + NYL Sbjct: 345 IDLSQ-----ENARIEKELNF--NVIKLSAKTGEGFSLLYNYL 380 >gi|238897953|ref|YP_002923633.1| putative GTP-binding protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259645880|sp|C4K4J2|DER_HAMD5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229465711|gb|ACQ67485.1| putative GTP-binding protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 496 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 17/175 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTLVN + +V TTR + + + +F+DT G+ + Sbjct: 212 LAIVGRPNVGKSTLVNHILAQDRMLVYDIPGTTRDSIYIPLIRNNREYIFIDTAGVRKSA 271 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + I++A++V LV+D++ + LL I L++ +NK D Sbjct: 272 KIKEKVERFSVIKTLKAIENANVVLLVIDANEGVSDQDLSLLSFILNSGRSLVITVNKWD 331 Query: 142 CVKPERLLEQAEIAN----KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E+ + +I N +L F++ +T +SA G G +++ Y CST Sbjct: 332 AISSEK---RKQIKNSLDLRLGFMDFARTHFISALHGSGVENLFKSIKEAYDCST 383 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 8/168 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 +AL+G N GKST NR ++V TR G + + + +DT GI Sbjct: 5 IALIGRPNVGKSTFFNRLTQTANALVADFPGLTRDRQYGHAEIENHKFIIIDTGGINGIE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ K M S+ I+ AD+V ++D+ L ++ K + KR L+ NKID Sbjct: 65 GIENIQKHMTHQSFLAIEEADVVLFILDARAGLLPADLEIAKHLRKRKKATFLVANKIDG 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + L + + K + ++A+ G G +++ + + P P Sbjct: 125 MNSDTALTDFY----SLALGKVYGIAASHGRGVAQLMSSVIT--PFVP 166 >gi|237722682|ref|ZP_04553163.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_2_4] gi|229448492|gb|EEO54283.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_2_4] Length = 465 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDVHGTTRDVIEDTINIGGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VD+ I L ++I R LI++ NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDAVNAAS-QIEQLSEKIIPRCEGKHLIVVFNKADL 341 Query: 143 VKPER 147 ++ ++ Sbjct: 342 IEDKQ 346 >gi|190171244|gb|ACE63692.1| ThdF [Escherichia hermannii] Length = 438 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 192 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 251 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 252 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 296 >gi|298492105|ref|YP_003722282.1| ribosome-associated GTPase EngA ['Nostoc azollae' 0708] gi|298234023|gb|ADI65159.1| ribosome-associated GTPase EngA ['Nostoc azollae' 0708] Length = 454 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKSTLVNR G + +IV + TR + V +DT G +FN Sbjct: 6 VAIIGRPNVGKSTLVNRLAGDQTAIVHDEPGVTRDRTYRPAFWGNREFVVVDTGGLVFND 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + + + A VVD R ++ + ++ ++L +NK C Sbjct: 66 DTEFLPLIRQQALMALSEACAAIFVVDGQRGPMPADQEIADWLHQQPVPILLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P++ L QA +L E + +SA G G ++L+ L + +P Sbjct: 124 SPDQGLIQASGFWELGLGEP-YPISAIHGSGTGEILDELITHVP 166 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 5/142 (3%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 IT KD +DN VA++G N GKS+L+N FVG + +IV+ TTR + + Sbjct: 162 ITHVPNVKDSPEDNVIK--VAIIGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTIDTEI 219 Query: 66 SEKESQIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 +DT GI K + I ++ I+ AD+V LV+D+ L Sbjct: 220 VRNGQTYRLIDTAGIRKKKHIEYGTEFFSINRAFKAIRRADVVLLVLDAEDGATEQDQKL 279 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 I + I+++NK D V+ Sbjct: 280 AGRITEEGRACIIVVNKWDAVE 301 >gi|146319108|ref|YP_001198820.1| tRNA modification GTPase TrmE [Streptococcus suis 05ZYH33] gi|146321314|ref|YP_001201025.1| tRNA modification GTPase TrmE [Streptococcus suis 98HAH33] gi|253752156|ref|YP_003025297.1| tRNA modification GTPase TrmE [Streptococcus suis SC84] gi|166234827|sp|A4W2N6|MNME_STRS2 RecName: Full=tRNA modification GTPase mnmE gi|166234829|sp|A4VWD1|MNME_STRSY RecName: Full=tRNA modification GTPase mnmE gi|145689914|gb|ABP90420.1| Predicted GTPase [Streptococcus suis 05ZYH33] gi|145692120|gb|ABP92625.1| Predicted GTPase [Streptococcus suis 98HAH33] gi|251816445|emb|CAZ52081.1| tRNA modification GTPase TrmE [Streptococcus suis SC84] Length = 457 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD++ LV+++ L +LL I+ ++R++L LNK Sbjct: 281 IRETDDIVEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLA-ISDMANRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|40063333|gb|AAR38151.1| tRNA modification GTPase TrmE [uncultured marine bacterium 578] Length = 449 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKS+L+N +IVT TTR +++ + + +DT G+ N+ Sbjct: 221 VAIAGKPNAGKSSLLNALTKQPSAIVTDIAGTTRDVLKETIHIDGMPLHIIDTAGLHNSN 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + IR + + I +AD+V LV D+ K+ +L E A ++ +I I NKID +K Sbjct: 281 NIIEQEGIRRAHTEINNADVVLLVYDAKD--KLADFSILPE-AVKNKPIICIRNKIDLLK 337 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +AEI K V + +SA G G D + L P Sbjct: 338 A-----KAEI--KEVKHQTEVSLSAKNGDGIDLLRQALSEAAGYKP 376 >gi|67459606|ref|YP_247230.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2] gi|75535997|sp|Q4UK70|MNME_RICFE RecName: Full=tRNA modification GTPase mnmE gi|67005139|gb|AAY62065.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2] Length = 480 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 16/150 (10%) Query: 10 NEHKDFVQDNSR-----SGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 NE +++ DN R SG +A++G N GKS+L+N + ++IV++ TTR I+ G Sbjct: 232 NEISNYLNDNRRGELLNSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEG 291 Query: 64 IVSEKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNI 119 + I+ DT GI + D + I+ + + K ADI ++ D+ + + +I Sbjct: 292 HLDIGGYPIILQDTAGIREESSDIIEQEGIKRAIHSAKTADIKIIMFDAEKLDSSINEDI 351 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLL 149 +L+ E I I+NKID ++P ++ Sbjct: 352 MNLINE------NTITIINKIDLIEPNKIF 375 >gi|19552644|ref|NP_600646.1| GTP-binding protein EngA [Corynebacterium glutamicum ATCC 13032] gi|62390312|ref|YP_225714.1| GTP-binding protein EngA [Corynebacterium glutamicum ATCC 13032] gi|41325649|emb|CAF21438.1| GTPase of unknown function [Corynebacterium glutamicum ATCC 13032] Length = 543 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + I + DT G Sbjct: 106 TVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPN 165 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + + + AD++ VVD+ + + ++ + +IL+ NK D Sbjct: 166 VKGIHASIAQQAEVAMSTADVIVFVVDTKVGITETDSVMAAKLLRSEVPVILVANKFDS- 224 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + AE + + + + VSA G G DVL+ + P P Sbjct: 225 -DSQWADMAEFYS--LGLGDPYPVSAQHGRGGADVLDKVLELFPEEP 268 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+F G S+V + TT V ++ + F+DT G+ Sbjct: 280 VALVGKPNVGKSSLLNKFAGETRSVVDNVAGTTVDPVDSLIQLDQKLWKFVDTAGLRKKV 339 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 S H+ L + I A++ L++DS + +L I L++ NK D Sbjct: 340 KTASGHEYYASLRTHGAIDAAELCVLLIDSSEPITEQDQRVLAMITDAGKALVIAFNKWD 399 Query: 142 CVKPERLLE 150 + +R ++ Sbjct: 400 LMDEDRRID 408 >gi|331007811|ref|ZP_08330916.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC1989] gi|330418378|gb|EGG92939.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC1989] Length = 471 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT+ TTR ++R + + +DT G+ ++ Sbjct: 231 VVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRSSN 290 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR------ELKVNIHDLLKEIAKRS---SRLIL 135 D ++ I +W I+ AD + L++DS ++ I + + ++ SR+ + Sbjct: 291 DVVEQIGIERAWVEIEQADRILLLIDSTNYNADTPDINTEIRQFIDDNKHKNIDISRISV 350 Query: 136 ILNKID 141 I NKID Sbjct: 351 ICNKID 356 >gi|291520339|emb|CBK75560.1| small GTP-binding protein domain [Butyrivibrio fibrisolvens 16/4] Length = 273 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N + +IVT TTR + ++ + +DT GI D Sbjct: 92 ILGKPNAGKSSLLNTLSRRERAIVTDIPGTTRDTLEEQITINGVSLNIIDTAGIRETDDI 151 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K+ + + +I AD++ V+DS R L N H ++ +I + ++I++LNK D V Sbjct: 152 VEKIGVDKALDSIDDADLILFVIDSSRPLDENDHFIIDKIMDK--KVIILLNKSDLV 206 >gi|253753982|ref|YP_003027123.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7] gi|251820228|emb|CAR46651.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7] gi|292558744|gb|ADE31745.1| tRNA modification GTPase TrmE [Streptococcus suis GZ1] gi|319758543|gb|ADV70485.1| tRNA modification GTPase TrmE [Streptococcus suis JS14] Length = 457 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD++ LV+++ L +LL I+ ++R++L LNK Sbjct: 281 IRETDDIVEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLA-ISDMANRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|237713435|ref|ZP_04543916.1| tRNA modification GTPase TrmE [Bacteroides sp. D1] gi|262407222|ref|ZP_06083770.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_22] gi|294647342|ref|ZP_06724935.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CC 2a] gi|294809037|ref|ZP_06767759.1| tRNA modification GTPase TrmE [Bacteroides xylanisolvens SD CC 1b] gi|229446417|gb|EEO52208.1| tRNA modification GTPase TrmE [Bacteroides sp. D1] gi|262354030|gb|EEZ03122.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_22] gi|292637301|gb|EFF55726.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CC 2a] gi|294443762|gb|EFG12507.1| tRNA modification GTPase TrmE [Bacteroides xylanisolvens SD CC 1b] Length = 465 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ ++ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDVHGTTRDVIEDTINIGGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNKIDC 142 D+ L I ++ + A+IV +VD+ I L ++I R LI++ NK D Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMVDAVNAAS-QIEQLSEKIIPRCEGKHLIVVFNKADL 341 Query: 143 VKPER 147 ++ ++ Sbjct: 342 IEDKQ 346 >gi|58584843|ref|YP_198416.1| GTP-binding protein EngA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419159|gb|AAW71174.1| Predicted GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 470 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 98/234 (41%), Gaps = 26/234 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKST +N + I + + TTR V + I +DT GI Sbjct: 207 VAIIGRPNVGKSTFLNSLLSENRLITSSEPGTTRDSVDITYNHNGKLITLIDTAGIRRRA 266 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N D+ ++ S +IK + +V L++DS +K + + K +I++LNK D Sbjct: 267 NLIDNLELKFVKKSMESIKRSHVVVLMLDSLLGIKQQDLSIGEAAIKGGKGIIIVLNKWD 326 Query: 142 CVKPE------RLLEQAEIANKLVFIE-KTFMVSATKGHGCDDV----------LNYLCS 184 + + + + Q EI +F+E T +SA KG C DV LN S Sbjct: 327 LINKDDRSRLIKFVRQQEITR--LFLEVPTVTISALKGIRCSDVIDKCLEVNEFLNKKIS 384 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSS--CVVTEKWEE 236 T + W+ D + P R K + + P S C V E +E Sbjct: 385 TAKVNKWL--VDALGRHPHPFVKGRAIRMKYIAQIGTKPPAFSLTCNVPEGVDE 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL NR +G K ++V++ TR G+ + ++ +DT G + Sbjct: 4 IAIVGLPNAGKSTLFNRILGRKAAVVSNIPGITRDRQEGVGRISDLELKIIDTGGWNDQT 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 + + +++ ++ +S ADI+ +VD+ + + N + K + +R+++ +ILI NK + Sbjct: 64 NFFLQIVEQIEFSLF-SADIIFFLVDAKVQNEQN-KEFAKWLKRRTNKSVILIANKCESY 121 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K E + + FI + +SA G D+ N L + Sbjct: 122 KSENI----DYLQFFDFIGPVY-ISAEHNLGMVDLYNALAGVI 159 >gi|317131002|ref|YP_004097284.1| tRNA modification GTPase TrmE [Bacillus cellulosilyticus DSM 2522] gi|315475950|gb|ADU32553.1| tRNA modification GTPase TrmE [Bacillus cellulosilyticus DSM 2522] Length = 458 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR ++ V+ + + LDT G Sbjct: 218 RDGLSTVIIGRPNVGKSSLLNNLVHDNKAIVTEIAGTTRDVIEEYVNVRGVPLRLLDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S + A++V LV++ + EL + +L I+K R I+I+NK Sbjct: 278 IRETDDVVEKIGVERSRKVVGDAELVLLVLNYNEELTESDEELF-HISKGKER-IIIINK 335 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + + ++AN+ + + + K G D++ Sbjct: 336 TDLERKINMERVKQLANEAPIVSTSLI----KDEGVDEL 370 >gi|190171270|gb|ACE63705.1| ThdF [Cronobacter genomosp. 1] gi|190171276|gb|ACE63708.1| ThdF [Cronobacter malonaticus] gi|190171298|gb|ACE63719.1| ThdF [Cronobacter sakazakii] gi|190171300|gb|ACE63720.1| ThdF [Cronobacter sakazakii] gi|190171302|gb|ACE63721.1| ThdF [Cronobacter sakazakii] gi|190171306|gb|ACE63723.1| ThdF [Cronobacter sakazakii] gi|190171308|gb|ACE63724.1| ThdF [Cronobacter sakazakii] gi|190171310|gb|ACE63725.1| ThdF [Cronobacter sakazakii] gi|190171320|gb|ACE63730.1| ThdF [Cronobacter sakazakii] gi|190171324|gb|ACE63732.1| ThdF [Cronobacter sakazakii] gi|190171330|gb|ACE63735.1| ThdF [Cronobacter sakazakii] gi|190171336|gb|ACE63738.1| ThdF [Cronobacter sakazakii] gi|190171338|gb|ACE63739.1| ThdF [Cronobacter sakazakii] gi|190171340|gb|ACE63740.1| ThdF [Cronobacter sakazakii] gi|190171342|gb|ACE63741.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|215485156|ref|YP_002327397.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB307-0294] gi|301345950|ref|ZP_07226691.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB056] gi|301510087|ref|ZP_07235324.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB058] gi|301594675|ref|ZP_07239683.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB059] gi|332854708|ref|ZP_08435495.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013150] gi|332865588|ref|ZP_08436428.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013113] gi|213988539|gb|ACJ58838.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB307-0294] gi|332727865|gb|EGJ59267.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013150] gi|332735240|gb|EGJ66317.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013113] Length = 451 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 203 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 263 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEH 322 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 323 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 373 Query: 186 LPLAP 190 P Sbjct: 374 AGFHP 378 >gi|157827640|ref|YP_001496704.1| GTP-binding protein EngA [Rickettsia bellii OSU 85-389] gi|166225850|sp|A8GXR7|DER_RICB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157802944|gb|ABV79667.1| GTP-binding protein EngA [Rickettsia bellii OSU 85-389] Length = 452 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 LVG N GKSTL NR K +IV V R G + E ++ DTPG Sbjct: 13 LVGRPNVGKSTLFNRLSMRKKAIVHDLPGVTRDRKYTDGRIGSFEFSLI--DTPGFEENP 70 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 DS+ K ++ + I AD++C +VDS + + L + K + +L++NK C Sbjct: 71 DSFGKRLMEQTTKAINEADLICFMVDSRSGILPDDKLLSDFVRKYNKPAVLVINK--C-- 126 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 127 -EKAFDFDKEYYKLGF-DSMVAISAEHGTGMIDLYDEIIAKLP 167 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D + C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 176 IHDPIKGDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKGNHIK 235 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S KL + ++IK A+ V L++D+ LK ++ +A Sbjct: 236 LIDTAGLRKKATITESLEKLSASDAINSIKFANTVILMIDALSPLKQQDLNIASHVANEG 295 Query: 131 SRLILILNKIDCVK 144 +++++NK D +K Sbjct: 296 RSIVIVVNKWDLIK 309 >gi|89074711|ref|ZP_01161169.1| tRNA modification GTPase [Photobacterium sp. SKA34] gi|89049475|gb|EAR55036.1| tRNA modification GTPase [Photobacterium sp. SKA34] Length = 455 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 14/163 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I HAD V +VD + ++ + +R L +I NK + Sbjct: 280 DEVERIGIERAWDEIAHADRVLFMVDGTTTDATDPKEIWPDFIERLPADMGLTVIRNKAE 339 Query: 142 CVKPERLLEQAEI--ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 EQ I AN I +SA G G D + +L Sbjct: 340 LTG-----EQTGICHANNPTLIR----LSARTGDGVDALREHL 373 >gi|312794739|ref|YP_004027662.1| tRNA modification gtpase trme [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181879|gb|ADQ42049.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kristjanssonii 177R1B] Length = 455 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG +VG N GKS+L+NR + + +IVT TTR ++ ++ + I+ DT G Sbjct: 218 KSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +D K+ ++ + +I+ AD+V +++S L+ ++ ++ + I + R I+++NK Sbjct: 278 VRKTEDVVEKIGVKKTLESIERADLVLFMIESSGILQEDL-EIFETI--KDKRFIVLVNK 334 Query: 140 ID 141 ID Sbjct: 335 ID 336 >gi|219669400|ref|YP_002459835.1| GTP-binding protein EngA [Desulfitobacterium hafniense DCB-2] gi|254783150|sp|B8G2P9|DER_DESHD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219539660|gb|ACL21399.1| small GTP-binding protein [Desulfitobacterium hafniense DCB-2] Length = 441 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--F 81 VA+VG N GKSTL NR G V+IV ++ TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYRDSEWLGRKFTIIDTGGIEFV 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 N S M R + I+ AD++ V+D+ + D++ + +RS + +IL NK+ Sbjct: 65 NENTSISAQMRRQAEIAIEEADVIVFVIDAQISPTPD-DDMIAQTLRRSGKPVILAANKV 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L E + + + +SA G D+L+ + S P Sbjct: 124 ENFAKTELYEFYNLG-----LGEPVPISAVHGMNIGDLLDEVVSHFP 165 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/164 (21%), Positives = 78/164 (47%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+LVN +G + IV++ TTR + + + +DT G+ Sbjct: 179 IAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAIDSAFEHEGKHYIIIDTAGMRRKG 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + + S + +D++ +++D+ + + + ++L++NK D Sbjct: 239 RIEELTEQYSVSRSLRAVDRSDVILMLLDAGEGVTEQDKKIAGYAHEAGKGIVLVVNKWD 298 Query: 142 CV-KPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLN 180 + K ++ + + E I +L F++ T +SA G +L+ Sbjct: 299 LIEKDDKTMNRFEKDIREELGFMQYAPTLFISAKTGQRVTKLLD 342 >gi|190171230|gb|ACE63685.1| ThdF [Enterobacter pulveris] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDG 297 >gi|160893418|ref|ZP_02074203.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50] gi|156864813|gb|EDO58244.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50] Length = 459 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N F+G +IVT TTR + +V+ + +DT GI + +D Sbjct: 227 IVGKPNAGKSSLLNMFLGENRAIVTDIAGTTRDTLEEVVNINGIILNIVDTAGIRDTEDI 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + AD++ V+D L N ++ EI + +I ++NK D Sbjct: 287 VEKMGVDKALEFASQADLILYVIDGSVPLDDNDKQIISEI--KGKNVIAVMNKND 339 >gi|172057814|ref|YP_001814274.1| GTP-binding protein EngA [Exiguobacterium sibiricum 255-15] gi|171990335|gb|ACB61257.1| small GTP-binding protein [Exiguobacterium sibiricum 255-15] Length = 436 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR +G +VSIV K TR + G +DT GI Sbjct: 5 VVAIVGRPNIGKSTIFNRVIGDRVSIVEDKPGVTRDRIYGTGEWLNRHFHLIDTGGIEVG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + ++M + I AD++ +V+ + ++ + + + +++ +NK+D Sbjct: 65 DEPLLQMMRHQAELAIDEADVIIFMVNGREGITAADEEVANMLFRSNKPVVVAVNKVDNF 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + L+ + L F + + +S T G G D+L+ + L LAP Sbjct: 125 EMRDLMYE---FYSLGFGD-LYPISGTHGLGLGDMLDRV---LELAP 164 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 ALVG N GKS++ N +G + IV+ TTR + S E + V +DT G+ Sbjct: 179 ALVGRPNVGKSSMTNSILGEERVIVSSIAGTTRDAIDTPFSRDEQEYVIIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S + + + I+ AD+VC+V+D + + + +++++NK D Sbjct: 239 VYESTERFSVMRAQKAIERADVVCVVLDGEEGIIEQDKKVAGYAHEAGRAIVIVVNKWDA 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 >gi|227496096|ref|ZP_03926402.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces urogenitalis DSM 15434] gi|226834330|gb|EEH66713.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces urogenitalis DSM 15434] Length = 720 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G +V++V TR V + +DT G Sbjct: 284 VLAVVGRPNVGKSTLVNRVLGRRVAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWELD 343 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + ++ AD V LVVD+ + ++K + + ++L NK+D Sbjct: 344 VKGLDQAVATQAEVAVELADAVILVVDAQVGITATDASVVKMLRRSGKPVVLAANKVDSA 403 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + A + N + + + + VSA G G +VL+ + LP Sbjct: 404 AQEG--DAAALWN--LGLGEPYPVSALHGRGSGEVLDAAMAILP 443 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N G++ +V TTR V ++ Q +F+DT GI Sbjct: 461 VALVGRPNVGKSSLLNSIAGSQRVVVNELAGTTRDPVDEVIELDGRQWLFIDTAGIRRRV 520 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + I+ A++ +++D+ + +++++ L+L+ N Sbjct: 521 KQSRGADYYAVLRTQ---GAIEKAEVAVVLLDASESVSEQDVRVIQQVVDAGRALVLVNN 577 Query: 139 KIDCVKPER 147 K D V ER Sbjct: 578 KWDLVDEER 586 >gi|190171268|gb|ACE63704.1| ThdF [Cronobacter genomosp. 1] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|190171258|gb|ACE63699.1| ThdF [Cronobacter dublinensis] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|188996901|ref|YP_001931152.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1] gi|188931968|gb|ACD66598.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1] Length = 447 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 49/87 (56%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L N VG + +IV+ TTR + + K+ ++ LDT G+ + + Sbjct: 218 LAIVGRPNVGKSSLFNALVGYERAIVSEIQGTTRDFIEESLKIKDIPVILLDTAGLRDTE 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ I + I ADI+ V+D+ Sbjct: 278 DKIEKIGIEKAQEKINEADIILFVIDA 304 >gi|262371080|ref|ZP_06064402.1| GTPase [Acinetobacter johnsonii SH046] gi|262313966|gb|EEY95011.1| GTPase [Acinetobacter johnsonii SH046] Length = 469 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + +DT GI Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVFQNKSFIVVDTGGIGEN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDSYMAEQSKTAINEADIIVFVVDARAGLLASDEQIARELRTLGKKVYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + S++P Sbjct: 124 HAEAAL----VEFYKLGMGEPMQVAASHGRGVQQMLEDVLSSVP 163 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 16/194 (8%) Query: 11 EHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E +D + + +G +A++G N GKSTLVNR +G + + + TTR + Sbjct: 164 EDEDADEHDKNTGLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPYERDG 223 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE--LKVNIHDLLK 124 Q +DT G+ + K I + IK A ++ +V+D+ RE ++ ++H L+ Sbjct: 224 RQYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAIKDAHVIVVVLDA-REGVVEQDLH-LIG 281 Query: 125 EIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL-- 179 + +++ +NK D + +R + ++ + FI K ++SA G G D+ Sbjct: 282 YALEAGRAMVIAINKWDNMSEYDRKQCKLDVDRRFDFIPWAKVHLISALHGTGVGDLYPS 341 Query: 180 ---NYLCSTLPLAP 190 Y S L ++P Sbjct: 342 IHRAYDSSHLKVSP 355 >gi|122700691|emb|CAL87934.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 7/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDN 126 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 K ++ A + K+F +S + G +++ + S L L P Sbjct: 127 DKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|26006713|sp|Q8NQK6|DER_CORGL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21324196|dbj|BAB98821.1| Predicted GTPases [Corynebacterium glutamicum ATCC 13032] Length = 519 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRF+G + ++V TR + I + DT G Sbjct: 82 TVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPN 141 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + + + AD++ VVD+ + + ++ + +IL+ NK D Sbjct: 142 VKGIHASIAQQAEVAMSTADVIVFVVDTKVGITETDSVMAAKLLRSEVPVILVANKFDS- 200 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + AE + + + + VSA G G DVL+ + P P Sbjct: 201 -DSQWADMAEFYS--LGLGDPYPVSAQHGRGGADVLDKVLELFPEEP 244 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+F G S+V + TT V ++ + F+DT G+ Sbjct: 256 VALVGKPNVGKSSLLNKFAGETRSVVDNVAGTTVDPVDSLIQLDQKLWKFVDTAGLRKKV 315 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 S H+ L + I A++ L++DS + +L I L++ NK D Sbjct: 316 KTASGHEYYASLRTHGAIDAAELCVLLIDSSEPITEQDQRVLAMITDAGKALVIAFNKWD 375 Query: 142 CVKPERLLE 150 + +R ++ Sbjct: 376 LMDEDRRID 384 >gi|253567260|ref|ZP_04844710.1| GTP-binding protein engA [Bacteroides sp. 3_2_5] gi|251944091|gb|EES84610.1| GTP-binding protein engA [Bacteroides sp. 3_2_5] Length = 437 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G + +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S I+ AD+ L+VD+ R ++ ++ I K S L++++NK Sbjct: 239 VNEDLEYYSVV--RSIRAIEGADVCILMVDATRGIESQDLNIFSLIQKNSKGLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 20/190 (10%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNDEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 N+ D + + + + + AD++ VVD + + DL ++A + S +I++ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVD----VTNGVTDLDMQVAAILRRAKSPVIMV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D L A +L + + +SA G G D+++ + S +D Sbjct: 118 ANKTDN---HELRYNAPEFYRL-GLGDPYCISAISGSGTGDLMDLIVSKFK-----KESD 168 Query: 197 QI--SDLPMF 204 +I D+P F Sbjct: 169 EILDEDIPRF 178 >gi|257063791|ref|YP_003143463.1| GTP-binding proten HflX [Slackia heliotrinireducens DSM 20476] gi|256791444|gb|ACV22114.1| GTP-binding proten HflX [Slackia heliotrinireducens DSM 20476] Length = 433 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA G TNAGKS+L+NR A+V T S R +V + ++ DT G Sbjct: 216 VAEAGYTNAGKSSLLNRLTNAEVLSYDKLFATLDSTTRKLVLPEGREVTITDTVGFIQKL 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVN-IHDLLKEIAKRSSRLILILNKI 140 + + I+ AD++ VVD+ R+L++N + D L++I + +++ NKI Sbjct: 276 PTTLVEAFNSTLDEIRGADLIMHVVDASSNERDLQMNAVGDTLEQIGAQDIPRLVVFNKI 335 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 D V ++A +A++ +VSA G G D +++ L Sbjct: 336 DLVDEG---DRAILASRYPM---AILVSAETGEGIDGLIDALA 372 >gi|256823051|ref|YP_003147014.1| small GTP-binding protein [Kangiella koreensis DSM 16069] gi|256796590|gb|ACV27246.1| small GTP-binding protein [Kangiella koreensis DSM 16069] Length = 467 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ ++V + TR G + K + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDALVANLPGLTRDRQYGQATLKGQKFIVVDTGGIAGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ LM S I A+IV +VD+ + + + +++ +I+++NK+D + Sbjct: 64 EEGIDGLMAGQSLLAITEANIVLFLVDARTGMTAADEFVADHLRRQNKPIIVLVNKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPL 188 + A +++ +T + ++A G G + +++ + L L Sbjct: 124 HAD-----AALSDYYSLGYQTVLPLAAAHGRGVNTLVDTIFDELHL 164 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTLVNRF+G + +V TTR + + ++ + +DT G+ Sbjct: 183 LAIVGRPNVGKSTLVNRFLGEERVVVYDLPGTTRDSIYIEMERRDKKYTLIDTAGVRRRG 242 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K++ K + + I +++ +V+D+ + L+ I +++ +NK D Sbjct: 243 KVKETVEKFSVLKTLQAIDDSNVSIMVMDAREPITDQDLSLISYIIDSGRSMVIAINKWD 302 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKG 172 + E R + EI +L FI+ + +SA G Sbjct: 303 GMTEEQRDTVKHEIDRRLGFIDFARIHFISALHG 336 >gi|261345330|ref|ZP_05972974.1| ribosome-associated GTPase EngA [Providencia rustigianii DSM 4541] gi|282566664|gb|EFB72199.1| ribosome-associated GTPase EngA [Providencia rustigianii DSM 4541] Length = 491 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + E + + +DT G+ Sbjct: 207 LAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRKRG 266 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++ +NK D Sbjct: 267 KVTETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNAGRSLVIAVNKWD 326 Query: 142 CVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +KPE + + E+ V + +SA G G ++ Sbjct: 327 GMKPEDRDHVKDMLELRLGFVDFARIHFISALHGSGVGNLF 367 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 54/120 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R + L+ NK D + Sbjct: 64 EEGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGI 123 >gi|205829074|sp|A3M8Y8|MNME_ACIBT RecName: Full=tRNA modification GTPase mnmE Length = 454 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 206 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 266 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEH 325 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 326 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 376 Query: 186 LPLAP 190 P Sbjct: 377 AGFHP 381 >gi|190171322|gb|ACE63731.1| ThdF [Cronobacter sakazakii] gi|190171326|gb|ACE63733.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|307151569|ref|YP_003886953.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822] gi|306981797|gb|ADN13678.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822] Length = 458 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 10/159 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG VA+VG N GKS+L+N + + +IVT TTR +V + I LDT G Sbjct: 221 RSGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S + AD++ L +D+ + +++ R LIL++NK Sbjct: 281 IRETDDRVEKIGVERSRHAAEAADLILLTIDAQTGWTPEDEQIYQQVKHRP--LILVINK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D L++A+ N I A K G D + Sbjct: 339 TD-------LQEAKSVNYPSDITSVVETVAAKNEGIDQL 370 >gi|146299639|ref|YP_001194230.1| GTP-binding protein EngA [Flavobacterium johnsoniae UW101] gi|238686648|sp|A5FIR0|DER_FLAJ1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146154057|gb|ABQ04911.1| small GTP-binding protein [Flavobacterium johnsoniae UW101] Length = 437 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 7/184 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + VA+VG N GKSTL NR + + +IV TR G + +DT G Sbjct: 3 NNIVAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYV 62 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + IR I AD++ VVD + + K + K + ++L +NK+ Sbjct: 63 RGSDDVFEGEIRKQVELAIDEADVIIFVVDVEEGITPMDETVAKLLRKVTKPVLLAVNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D E+ + E N + + + ++ G G D+L+ L P P A+ + Sbjct: 123 DNAMREK--DAIEFYN--LGLGDYYTFASISGSGTGDLLDALIDAFPEKP--EPAEAAEE 176 Query: 201 LPMF 204 LP F Sbjct: 177 LPRF 180 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + +DT GI Sbjct: 181 AVVGRPNAGKSSFINALIGQDRYIVTDIAGTTRDAIDTKFDRFGFEFNLVDTAGIRRKAK 240 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I+HAD+ LV+D+ R + + K +++++NK D Sbjct: 241 VKEDLEFYSVMRSVRAIEHADVCILVIDATRGFEGQDQSIFWLAEKNRKGVVILVNKWDL 300 Query: 143 VKPERL 148 V+ + + Sbjct: 301 VEKDTM 306 >gi|223932526|ref|ZP_03624527.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591] gi|302024152|ref|ZP_07249363.1| tRNA modification GTPase TrmE [Streptococcus suis 05HAS68] gi|330833106|ref|YP_004401931.1| tRNA modification GTPase TrmE [Streptococcus suis ST3] gi|223898797|gb|EEF65157.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591] gi|329307329|gb|AEB81745.1| tRNA modification GTPase TrmE [Streptococcus suis ST3] Length = 457 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ K + +DT G Sbjct: 221 REGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S ++ AD++ LV+++ L +LL I+ ++R++L LNK Sbjct: 281 IRETDDIVEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLA-ISDLANRIVL-LNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|328952573|ref|YP_004369907.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109] gi|328452897|gb|AEB08726.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109] Length = 456 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 7/150 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+NR + +IVT TTR ++ + + + LDT G+ A+ Sbjct: 223 VVLAGRPNVGKSSLLNRLLQTDRAIVTDIPGTTRDVIAENLVIQGLPVCLLDTAGLRPAQ 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + ++ I+ + ++ AD+V ++D+ + +V L+ A R ++++LNKID Sbjct: 283 NLVEEIGIQRTQEHLQQADLVLYLLDASQPWQVEDEPQLQ--ALRDQSILVVLNKIDL-- 338 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHG 174 R+L+ A I + + +SA G G Sbjct: 339 -PRVLQPAAIPS--AWPHHLIEISALTGEG 365 >gi|190171226|gb|ACE63683.1| ThdF [Enterobacter pulveris] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDG 297 >gi|225374467|ref|ZP_03751688.1| hypothetical protein ROSEINA2194_00082 [Roseburia inulinivorans DSM 16841] gi|225213705|gb|EEG96059.1| hypothetical protein ROSEINA2194_00082 [Roseburia inulinivorans DSM 16841] Length = 449 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G ++SIV TR + VS + +DT GI + Sbjct: 12 VVAIVGRPNVGKSTLFNALAGERISIVQDTPGVTRDRIYAEVSWLDHNFTMIDTGGIEPD 71 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D M + I AD++ +VD + L+ + + + + ++L++NK+D Sbjct: 72 SNDIILSQMREQAEIAIATADVIMFIVDVRQGLQDSDSKVADMLRRSGKPVVLVVNKVDS 131 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + + E N + I F VSA G D+L+ + P Sbjct: 132 FE-KYMADVYEFYN--LGIGDPFPVSAASMLGLGDMLDEVVKYFP 173 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 4/144 (2%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 + +F E+K +++ R +A++G N GKS+L+N+ IV+ TTR + + Sbjct: 169 VKYFPEYKKDDEEDDRP-KIAIIGKPNVGKSSLINKLAQEDRVIVSDIAGTTRDAIDTDI 227 Query: 66 SEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + VF+DT G+ K+ + I + + ++ AD+ +V+D+ + + Sbjct: 228 KYNGKEYVFIDTAGLRRKNKIKEEIERYSIIRAVTAVERADVCIIVIDATEGVTEQDAKI 287 Query: 123 LKEIAKRSSRLILILNKIDCVKPE 146 R +I+ +NK D ++ + Sbjct: 288 AGIAHDRGKGIIIAVNKWDAIEKD 311 >gi|152971372|ref|YP_001336481.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895966|ref|YP_002920702.1| GTP-binding protein EngA [Klebsiella pneumoniae NTUH-K2044] gi|262040248|ref|ZP_06013499.1| ribosome-associated GTPase EngA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007822|ref|ZP_08306080.1| ribosome biogenesis GTPase Der [Klebsiella sp. MS 92-3] gi|166198723|sp|A6TCD0|DER_KLEP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|150956221|gb|ABR78251.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548284|dbj|BAH64635.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042357|gb|EEW43377.1| ribosome-associated GTPase EngA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535310|gb|EGF61796.1| ribosome biogenesis GTPase Der [Klebsiella sp. MS 92-3] Length = 492 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R L+ NK D + Sbjct: 64 EEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ++QA + + + ++A+ G G +L L PWV Sbjct: 124 D----VDQAMADFWSLGLGDIYPIAASHGRGVTSLLEQA-----LLPWV 163 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 207 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRG 266 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 267 KITDVVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 326 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVL 179 + E + EQ + + +L FI+ + +SA G G ++ Sbjct: 327 GLSQE-VKEQVKETLDYRLGFIDFARVHFISALHGSGVGNLF 367 >gi|146328997|ref|YP_001209837.1| tRNA modification GTPase TrmE [Dichelobacter nodosus VCS1703A] gi|166991106|sp|A5EY43|MNME_DICNV RecName: Full=tRNA modification GTPase mnmE gi|146232467|gb|ABQ13445.1| tRNA modification GTPase TrmE [Dichelobacter nodosus VCS1703A] Length = 450 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 19/132 (14%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------FLDTPGI 80 L G NAGKS+L+N +G + +IVT + TTR IVR E I+ DT G+ Sbjct: 221 LAGKPNAGKSSLLNALLGEERAIVTPQAGTTRDIVR------EDWIIDGIPVHLSDTAGL 274 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSRLI 134 ++D + IR S+ +K ADIV L+ D R V++ + L ++A ++ + Sbjct: 275 RESQDLVEQEGIRRSFDAVKRADIVLLLADGSARDNDARAEFVSLQEELHQLAPH-AQFL 333 Query: 135 LILNKIDCVKPE 146 ++ NK D V + Sbjct: 334 VVYNKADLVDEQ 345 >gi|122702845|emb|CAL88612.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|226227007|ref|YP_002761113.1| GTP-binding protein EngA [Gemmatimonas aurantiaca T-27] gi|259645877|sp|C1A8T3|DER_GEMAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226090198|dbj|BAH38643.1| GTP-binding protein EngA [Gemmatimonas aurantiaca T-27] Length = 436 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 26/175 (14%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS L NR +G +IV+ + TTR G Q +DT G+ Sbjct: 5 VVAVVGRPNVGKSHLFNRVIGEATAIVSDEAGTTRDRHFGEAEWAGRQFWLVDTGGL--V 62 Query: 84 KDSYHKLMI----RLSWSTIKHADIVCLVVDSHRELKVNIH-------DLLKEIAKRSSR 132 +DS H LM R I+ AD++ VVD+ KV +H D+L+ K Sbjct: 63 EDS-HLLMDTAIRRQVMQAIEEADLMLFVVDA----KVGVHPSDARIVDILRNSQK---P 114 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +L+ NK+D E + + + VSA G G D+L+ + + +P Sbjct: 115 WMLVANKVDDPASTDFYEFFRLG-----VTDVYPVSAQNGKGSGDLLDAVVANIP 164 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 11/125 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----- 79 VA++G N GKS+ VNR +G +V+ + TTR + + ++ +VF+DT G Sbjct: 176 VAVIGRPNVGKSSFVNRLLGEDRLVVSDESGTTRDAIDAPMRYHDTDLVFVDTAGLRRQS 235 Query: 80 -IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILIL 137 I + + Y L R + I +D+ L++D+ L+ N + +A + R LIL++ Sbjct: 236 RIDDGVEFYSALRTRRA---IDSSDVCILMIDATEGLQ-NQDLKIATMAWEAGRGLILVI 291 Query: 138 NKIDC 142 NK D Sbjct: 292 NKWDL 296 >gi|295836151|ref|ZP_06823084.1| GTP-binding protein HflX [Streptomyces sp. SPB74] gi|197695247|gb|EDY42180.1| GTP-binding protein HflX [Streptomyces sp. SPB74] Length = 496 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 15/191 (7%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI +D + R VA+ G TNAGKS+L+NR GA V + T V Sbjct: 253 EIAEMKTGRDLKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 312 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 313 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPAPEEQLA 372 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++E+ I+++NK D P + +L+ +EK + VSA G G + Sbjct: 373 AVREVIREVGATDVPEIVVINKADAADP-------VVLQRLLRVEKHSIAVSARSGQGIE 425 Query: 177 DVLNYLCSTLP 187 ++L + LP Sbjct: 426 ELLALIDEELP 436 >gi|284006778|emb|CBA72042.1| GTP-binding protein [Arsenophonus nasoniae] Length = 493 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 6/173 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + +DT GI + Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGKAEFAGQEFIIIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD L H + K + R L+ NK D + Sbjct: 64 EEGIENHMASQSLLAIEEADIVFFMVDVRSGLMPADHAIAKHLRSRKKETYLLANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + +L + + + ++A+ G G ++ + + P +P + D Sbjct: 124 DIDTVLGDF----YALGMRDIYPIAASHGRGVTQLIEKVVA--PYSPQTLAND 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 209 LAIVGRPNVGKSTLTNRILGEERVVVYDLPGTTRDSIYIPMERDGCEYVLIDTAGVRKRG 268 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + +I+ A++V LV+D+ + + LL I L++ +NK D Sbjct: 269 KITETVEKFSVIKTLQSIEDANVVLLVIDARQGISDQDLSLLGFILNAGRSLVIAVNKWD 328 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E ++ + +L FI+ K +SA G G ++ Sbjct: 329 GMSQEDRQSVKDMLDLRLGFIDFAKVHFISALHGSGVGNLF 369 >gi|190171296|gb|ACE63718.1| ThdF [Cronobacter sakazakii] gi|190171316|gb|ACE63728.1| ThdF [Cronobacter sakazakii] gi|190171318|gb|ACE63729.1| ThdF [Cronobacter sakazakii] gi|190171328|gb|ACE63734.1| ThdF [Cronobacter sakazakii] gi|190171344|gb|ACE63742.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|119505385|ref|ZP_01627459.1| predicted GTPase [marine gamma proteobacterium HTCC2080] gi|119458840|gb|EAW39941.1| predicted GTPase [marine gamma proteobacterium HTCC2080] Length = 472 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N S VA+VG N GKSTLVNR +G +V K TTR V + +DT Sbjct: 172 NDPSIRVAVVGRPNVGKSTLVNRLLGEDRVVVFDKPGTTRDSVYIRYERHDQAYTLIDTA 231 Query: 79 GIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 G+ N ++ K I + I A +V L++D+H L LL + L++ Sbjct: 232 GVRRRKNVREVVEKFSIVKTLKAINEAHVVILLMDAHEGLVEQDLHLLGQCIDAGRGLVV 291 Query: 136 ILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 +NK D + ER ++E+ +L F++ +SA G G Sbjct: 292 AINKWDGIASDERDWIRSELNRRLQFVDYADVHFISALHGTGV 334 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 7/177 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V + TR G ++ + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGKIGDAPFIVIDTGGISGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S I ADIV L+VD L L+ + +RS L++NKID V Sbjct: 64 ELGIDAAMADQSRVAIDEADIVLLLVDGRAGLHPGDESLVSYLRQRSKPFHLVVNKIDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + ++ T S +G VL + S + P AD ++D Sbjct: 124 GED--IAASDFYRLGCSQLHTIAASHNRG-----VLQLITSVIDALPQAAPADALND 173 >gi|295103710|emb|CBL01254.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii SL3/3] Length = 456 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKSTL+N G +IVT TTR +V V + ++ DT G+ +D Sbjct: 225 AIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDIRLNLFDTAGLRETED 284 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + IR SW ++ A ++ V D L + A R + I ++NK D Sbjct: 285 AIEAEGIRRSWKKLEEAGLILAVFDGSEPPSREDLALAQRCAGRPA--IALVNKED 338 >gi|257219496|gb|ACV50404.1| GTP-binding protein HflX [Rhizobium leguminosarum bv. viciae] Length = 432 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 23/198 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD---------SHRELKVNIHDLLKEIAKRSSRLI 134 ++ R + + AD++ V D S +++ ++DL + A+ RLI Sbjct: 264 LPTHLVAAFRATLEEVLEADLILRVRDMSDADNQAQSSDVMRI-LNDLGIDEAEAEKRLI 322 Query: 135 LILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL----NYLCSTLP 187 + NKID ++PE +++++ A+ +V VSA G G D ++ L + Sbjct: 323 EVWNKIDRLEPEVHDAMVQKSAGASNVV------AVSAVSGEGVDTLMEEISRRLSGVMT 376 Query: 188 LAPWVYSADQISDLPMFH 205 +A D+++ LP F+ Sbjct: 377 VATIRLPVDKLALLPWFY 394 >gi|169830379|ref|YP_001716361.1| small GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] gi|169637223|gb|ACA58729.1| small GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] Length = 427 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 7/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G NAGKS+L+N G +V+IV TT + + + ++ +DT G+ + Sbjct: 12 LAIFGRRNAGKSSLINALTGQQVAIVADVPGTTTDPVAKAMELLPLGPVMLIDTAGLDDT 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + +L + S ++ AD+V LVVD + D+L + R +I ++NK D Sbjct: 72 GE-LGRLRVEKSLDVLQKADLVLLVVDPGQGFGACEQDVLAHVRARDLPVIAVINKADLY 130 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E E+++ VSA G+G D + + + P Sbjct: 131 PEGAAGEWPELSSL-----PRIPVSARTGYGIDRLKRLIVGSAP 169 >gi|126643000|ref|YP_001085984.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 17978] Length = 406 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 158 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 217 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE---LKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 218 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEH 277 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 278 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 328 Query: 186 LPLAP 190 P Sbjct: 329 AGFHP 333 >gi|122701599|emb|CAL88189.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAMLNALNLNP 170 >gi|116630435|ref|YP_819588.1| tRNA modification GTPase TrmE [Lactobacillus gasseri ATCC 33323] gi|238853335|ref|ZP_04643715.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4] gi|282850777|ref|ZP_06260152.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1] gi|311111579|ref|ZP_07712976.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22] gi|122272628|sp|Q040F3|MNME_LACGA RecName: Full=tRNA modification GTPase mnmE gi|116096017|gb|ABJ61169.1| tRNA modification GTPase trmE [Lactobacillus gasseri ATCC 33323] gi|238834023|gb|EEQ26280.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4] gi|282558185|gb|EFB63772.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1] gi|311066733|gb|EFQ47073.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22] Length = 461 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S IK AD+V L++D+ ++L LL A + + I+ILNK Sbjct: 282 IHHTEDKVEKIGVERSKKAIKEADLVLLLLDASQDLTAEDKRLLDLTANK--KRIIILNK 339 Query: 140 ID 141 D Sbjct: 340 QD 341 >gi|319957038|ref|YP_004168301.1| tRNA modification GTPase trme [Nitratifractor salsuginis DSM 16511] gi|319419442|gb|ADV46552.1| tRNA modification GTPase trmE [Nitratifractor salsuginis DSM 16511] Length = 446 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N + + +IV+ TTR + + + +DT GI + Sbjct: 217 VAIVGKPNVGKSSLLNAMLSYERAIVSDVAGTTRDTIEEQIRIGSHIVRIIDTAGIRQTE 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKIDCV 143 D ++ + S ++++ A++V + D+ R + +L+ I A R LI+ LNK D Sbjct: 277 DRVERIGVERSLASLEEAEVVIALFDASRPWEREDERILERIEALRDKELIVALNKTDL- 335 Query: 144 KPERLLE 150 P RL E Sbjct: 336 -PRRLEE 341 >gi|317181135|dbj|BAJ58921.1| tRNA modification GTPase TrmE [Helicobacter pylori F32] Length = 450 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D+ +L I S ++++ DIV V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESADTIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|213155396|ref|YP_002317441.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB0057] gi|213054556|gb|ACJ39458.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB0057] Length = 406 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 158 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 217 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE---LKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 218 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEH 277 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 278 IEPR--RLMLIGNKCDLTG-----QSAEISDYQGF--RHITVSAKQEMGVQGLVDAITAH 328 Query: 186 LPLAP 190 P Sbjct: 329 AGFHP 333 >gi|207091818|ref|ZP_03239605.1| tRNA modification GTPase TrmE [Helicobacter pylori HPKX_438_AG0C1] Length = 450 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L++ + + I++LNK D Sbjct: 313 LIETLNRAKKPCIVVLNKND 332 >gi|53715371|ref|YP_101363.1| GTP-binding protein EngA [Bacteroides fragilis YCH46] gi|60683339|ref|YP_213483.1| GTP-binding protein EngA [Bacteroides fragilis NCTC 9343] gi|255011702|ref|ZP_05283828.1| GTP-binding protein EngA [Bacteroides fragilis 3_1_12] gi|265767858|ref|ZP_06095390.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_16] gi|313149536|ref|ZP_07811729.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|81313609|sp|Q5L8K8|DER_BACFN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81824906|sp|Q64NV3|DER_BACFR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52218236|dbj|BAD50829.1| putative phosphoglycerate dehydrogenase [Bacteroides fragilis YCH46] gi|60494773|emb|CAH09579.1| putative GTP-binding protein [Bacteroides fragilis NCTC 9343] gi|263252530|gb|EEZ24058.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_16] gi|301164828|emb|CBW24388.1| putative GTP-binding protein [Bacteroides fragilis 638R] gi|313138303|gb|EFR55663.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 437 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G + +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S I+ AD+ L+VD+ R ++ ++ I K S L++++NK Sbjct: 239 VNEDLEYYSVV--RSIRAIEGADVCILMVDATRGIESQDLNIFSLIQKNSKGLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 20/190 (10%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNDEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 N+ D + + + + + AD++ VVD + + DL ++A + S +I++ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVD----VTNGVTDLDMQVAAILRRAKSPVIMV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D L A +L + + +SA G G D+++ + S +D Sbjct: 118 ANKTDN---HELRYNAPEFYRL-GLGDPYCISAISGSGTGDLMDLIVSKFK-----KESD 168 Query: 197 QI--SDLPMF 204 +I D+P F Sbjct: 169 EILDEDIPRF 178 >gi|332879048|ref|ZP_08446757.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682997|gb|EGJ55885.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 437 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR + +IV+ + TTR G + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRHAIVSDEAGTTRDRQYGKSEWTGREFSVIDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 D + + + + + AD++ +VD L ++ + + I +R+ + +IL+ NK D Sbjct: 65 DDIFEEEIRKQVTLATEEADVILFLVDVRNGL-TDLDEAVANILRRTKKPVILVANKADT 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + AE + + + +SA G G ++L+ + S P Sbjct: 124 --NEWIYSAAEFY--ALGLGDPYCISAATGSGTGELLDLIVSKFP 164 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+L+N F+G + +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSLINAFIGEERNIVTDIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRKNK 238 Query: 86 -----SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y+ +M S I+++D+ L++D+ R ++ ++ + I + + L++++NK Sbjct: 239 VTEDLEYYSVM--RSIRAIENSDVCILMLDAERGIEAQDLNIFQLIQRNNKSLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 >gi|332670393|ref|YP_004453401.1| ribosome-associated GTPase EngA [Cellulomonas fimi ATCC 484] gi|332339431|gb|AEE46014.1| ribosome-associated GTPase EngA [Cellulomonas fimi ATCC 484] Length = 491 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 16/187 (8%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 + H V D R VALVG N GKS+L+N+ +GA+ +V TTR V +V K Sbjct: 220 SAHAKPVPDGPRR--VALVGRPNVGKSSLLNKVLGAERVVVDAVAGTTRDPVDELVLLKG 277 Query: 70 SQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 VF+DT GI + D Y L + + I+ A++ ++VD+ L ++ Sbjct: 278 EPWVFVDTAGIRRRVHQTSGPDFYASLRTQ---AAIEKAEVAVVLVDASAPLTEQDTRVI 334 Query: 124 KEIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 ++ L++ NK D + +R LE+ EI LV ++ +SA G D ++ Sbjct: 335 SQVVDAGRALVVAYNKWDLMDEDRRPYLER-EIEKDLVQVQWAPRVNISARTGWHTDRLV 393 Query: 180 NYLCSTL 186 L +L Sbjct: 394 PALQRSL 400 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 58 VLAVVGRPNVGKSTLVNRILGRREAVVEDMPGVTRDRVSYPAEWAGRRFTLVDTGGWEVD 117 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I AD V VVD+ +++ + + ++L NK+D Sbjct: 118 VAGIDARVAEQAEVAIALADAVLFVVDATVGATDTDEQVVRLLRRSGKPVVLCANKVDGP 177 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +E A + + + VSA G G D+L LP Sbjct: 178 A----VEADAAALWALGLGEPHPVSALHGRGTGDLLEAAVDALP 217 >gi|190171224|gb|ACE63682.1| ThdF [Enterobacter pulveris] gi|190171234|gb|ACE63687.1| ThdF [Enterobacter pulveris] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDG 297 >gi|312862558|ref|ZP_07722800.1| ribosome biogenesis GTPase Der [Streptococcus vestibularis F0396] gi|322517433|ref|ZP_08070306.1| ribosome-associated GTPase EngA [Streptococcus vestibularis ATCC 49124] gi|311101963|gb|EFQ60164.1| ribosome biogenesis GTPase Der [Streptococcus vestibularis F0396] gi|322123915|gb|EFX95474.1| ribosome-associated GTPase EngA [Streptococcus vestibularis ATCC 49124] Length = 436 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVARILYKTNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +A+I + + + VS+ G G DVL+ + LP Sbjct: 123 -NPEM---RADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR +I V + +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSDGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I +DIV +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D +K Sbjct: 295 KWDTIK 300 >gi|291278439|ref|YP_003495274.1| tRNA modification GTPase TrmE [Deferribacter desulfuricans SSM1] gi|290753141|dbj|BAI79518.1| tRNA modification GTPase TrmE [Deferribacter desulfuricans SSM1] Length = 442 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 22/161 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N + IV+ TTR +V ++ K + +DT GI N+ Sbjct: 218 IAIIGKPNVGKSSLMNYLLRENRVIVSDIPGTTRDVVEEEINIKGYNVKLIDTAGIRNSN 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKID 141 D + I S + + A+IV + D + E + I +L+K+ +I + NK+D Sbjct: 278 DKIEVIGIEFSKNKLNEANIVLFLFDLEKGVDEDDLQIMNLVKD-----KNIIKVANKLD 332 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K+V I+ +S G G DD+LN L Sbjct: 333 --------------KKMVDIDCDVEISVKTGEGVDDLLNIL 359 >gi|190171314|gb|ACE63727.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|190171228|gb|ACE63684.1| ThdF [Enterobacter pulveris] gi|190171232|gb|ACE63686.1| ThdF [Enterobacter pulveris] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDG 297 >gi|163784025|ref|ZP_02178984.1| tRNA modification GTPase [Hydrogenivirga sp. 128-5-R1-1] gi|159880710|gb|EDP74255.1| tRNA modification GTPase [Hydrogenivirga sp. 128-5-R1-1] Length = 270 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKS+L N +G + +IV+ TTR + + + +DT GI A Sbjct: 40 LAIAGRPNVGKSSLFNALIGYERAIVSEIKGTTRDFIEESFNIHGIPVKLIDTAGIREAG 99 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K+ I + IK ADIV V D++ L + ++I +S I++ NK D Sbjct: 100 DKIEKIGIEKTKEKIKEADIVLFVFDAYEGLTEEDFKIYEDIKHKSP--IIVANKSDL-- 155 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 LL++ E K F + F + T+ G ++ N + +TL L Sbjct: 156 ---LLDKYE--KKYYFKDIIFTSTKTQ-EGIQELENKILNTLGLT 194 >gi|122701519|emb|CAL88149.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFSISVSHNRGISALIDAILSVLNLNP 170 >gi|320157825|ref|YP_004190204.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus MO6-24/O] gi|31340460|sp|Q8DDI1|MNME_VIBVU RecName: Full=tRNA modification GTPase mnmE gi|319933137|gb|ADV88001.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus MO6-24/O] Length = 453 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 14/163 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI---LILNKID 141 D K+ I +W I+ AD V +VD + ++ + R I +I NK D Sbjct: 278 DEVEKIGIERAWDEIRQADRVLFMVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKAD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYL 182 Q + + + + + ++ SA G G D + N+L Sbjct: 338 ---------QTQESLGICHVSQPTLIRLSAKTGQGVDALRNHL 371 >gi|242255874|gb|ACS88921.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F VS + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MSKSFNVSVSHNRGISALIDAILNALNLNP 170 >gi|218134368|ref|ZP_03463172.1| hypothetical protein BACPEC_02262 [Bacteroides pectinophilus ATCC 43243] gi|217989753|gb|EEC55764.1| hypothetical protein BACPEC_02262 [Bacteroides pectinophilus ATCC 43243] Length = 463 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G TNAGKS+L+N G +IVT TTR + +S + DT GI + +D Sbjct: 231 ILGKTNAGKSSLLNALAGEDRAIVTDIAGTTRDTLEESISLDGVILNLTDTAGIRDTEDI 290 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ I + +AD++ V D+ R L N +L + R +I++LNK D Sbjct: 291 VEKIGIEKAMKCAGNADLIIYVADATRNLDDNDKKILDFVKGR--HVIVLLNKTD 343 >gi|122700679|emb|CAL87928.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ++ A + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISTLIDAILNALNLNP 170 >gi|320527698|ref|ZP_08028870.1| ribosome-associated GTPase EngA [Solobacterium moorei F0204] gi|320131941|gb|EFW24499.1| ribosome-associated GTPase EngA [Solobacterium moorei F0204] Length = 437 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 4/166 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 SG +A+VG N GKST+ NR G++VSIV TR + + +DT GI Sbjct: 3 SGVIAIVGRPNVGKSTIFNRIAGSRVSIVEDFPGVTRDRIYTTGEWTGKKFQLIDTGGIQ 62 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A Y + + + AD++ VV+ + + + + K++ ++L +N ID Sbjct: 63 LADQPYQEEIRAQVQIAMNEADVILFVVNGKMGMTDDDSYIAGILQKQTKPVVLAVNMID 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R++ E N + + VS G G DVL+ +P Sbjct: 123 --DSTRMMNIYEFYN--LGLGDPIAVSGVHGIGIGDVLDECLRLMP 164 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKS+LVN + K SIV++ TTR V + V +DT GI Sbjct: 177 IAVIGEPNVGKSSLVNAILKEKRSIVSNVQGTTRDAVDTPFVYEGKPYVIVDTAGIRKRG 236 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + + I+ D+ V+D ++ + + +++++NK D Sbjct: 237 KVYESVEKYSVLRAMTAIERCDVALFVIDGEAGIREQDKHVAGYACEAGKPIVIVVNKWD 296 Query: 142 CVK 144 V+ Sbjct: 297 AVE 299 >gi|317182657|dbj|BAJ60441.1| tRNA modification GTPase TrmE [Helicobacter pylori F57] Length = 450 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEQEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|269103815|ref|ZP_06156512.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium damselae subsp. damselae CIP 102761] gi|268163713|gb|EEZ42209.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium damselae subsp. damselae CIP 102761] Length = 455 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 14/163 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I AD V +VD + ++ + +R + L +I NKI+ Sbjct: 280 DEVERIGIERAWDEILQADRVLFMVDGTTTDATDPKEIWPDFIERLPENMGLTVIRNKIE 339 Query: 142 CVKPERLLEQAEI--ANKLVFIEKTFMVSATKGHGCDDVLNYL 182 EQA I N I +SA G G D + +L Sbjct: 340 LTG-----EQAGICHVNNPTLIR----LSALTGEGVDSLRQHL 373 >gi|320581325|gb|EFW95546.1| hypothetical protein HPODL_2880 [Pichia angusta DL-1] Length = 479 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 15/169 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G NAGKS+L+N +IV+ TTR + + ++V DT GI NA+ Sbjct: 241 ITLSGPPNAGKSSLLNIIANEDRAIVSEIEGTTRDSIEVPLDINGYKVVIGDTAGIRNAE 300 Query: 85 DSYHKLMIRLSWSTIKHADI-VCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + IR + AD+ + L+ + REL+ + D ++ K +L++ILNK D V Sbjct: 301 NQIEQEGIRRAKMKTSEADLNLVLLPCTPRELRKEMKDHIRSCDKE--KLLIILNKSDLV 358 Query: 144 KPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCSTL 186 P+ ++ N + +E+ F ++S G D+LN + L Sbjct: 359 TPD------QVGNLVAQLEQEFEPKEIKVISCRNKDGIHDLLNTITQKL 401 >gi|257871382|ref|ZP_05651035.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2] gi|257805546|gb|EEV34368.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2] Length = 465 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLVDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD++ LV++ L LL +I + R+IL LNK Sbjct: 285 IRETEDIVEKIGVERSRKALSEADLILLVLNQSESLTTEDKQLL-DITSGNKRIIL-LNK 342 Query: 140 IDCVKPERL 148 D P R+ Sbjct: 343 TDL--PSRI 349 >gi|228476619|ref|ZP_04061301.1| ribosome-associated GTPase EngA [Streptococcus salivarius SK126] gi|228251814|gb|EEK10879.1| ribosome-associated GTPase EngA [Streptococcus salivarius SK126] Length = 457 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 26 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDV 85 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL +NK+D Sbjct: 86 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVARILYKTNKPVILAVNKVD- 143 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +A+I + + + VS+ G G DVL+ + LP Sbjct: 144 -NPEM---RADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLP 185 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR +I V + + +DT G+ + Sbjct: 199 SLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSG 258 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I +DIV +V+++ RE I E K +I+++N Sbjct: 259 KVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 315 Query: 139 KIDCVK 144 K D +K Sbjct: 316 KWDTIK 321 >gi|190171346|gb|ACE63743.1| ThdF [Cronobacter turicensis] gi|190171348|gb|ACE63744.1| ThdF [Cronobacter turicensis] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|90408609|ref|ZP_01216764.1| GTP-binding protein EngA [Psychromonas sp. CNPT3] gi|90310301|gb|EAS38431.1| GTP-binding protein EngA [Psychromonas sp. CNPT3] Length = 488 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLDEDEFIVIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ LM S I AD V +VD+ L V + + K+ ++ ++ NK D + Sbjct: 64 EEGIDSLMAGQSLLAIDEADAVLFMVDARVGLMVADQAIADHLRKQEKKVFIVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL+NR +G + +V + TTR + +S + + + +DT G+ K Sbjct: 202 LAIIGKPNVGKSTLINRILGEERVVVFDQPGTTRDSIYIPMSRDDREYILIDTAGVRKRK 261 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL L++ +NK D Sbjct: 262 KVNETVEKFSVIKTLKAIEDANVVLLVIDARDGIAEQDLCLLGYTLNSGRSLVIAVNKWD 321 Query: 142 CV---KPERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + ER+ + E+ +L FI+ K +SA G G Sbjct: 322 GMTDYDKERV--KTELDRRLGFIDFAKIHFISALHGTGV 358 >gi|307292007|ref|ZP_07571876.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0411] gi|306497005|gb|EFM66553.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0411] Length = 436 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ V S RE + +L+ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIIFVA-SGREGITDADELVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E + + F VS + G G DVL+ P Sbjct: 123 -NPEMRNDIYEFY--ALGLGDPFPVSGSHGLGIGDVLDEAVKHFP 164 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 +L+G N GKS+L+N +G IV+ TTR + +E Q + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 TVK 300 >gi|190171352|gb|ACE63746.1| ThdF [Cronobacter turicensis] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|190171350|gb|ACE63745.1| ThdF [Cronobacter turicensis] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|190171266|gb|ACE63703.1| ThdF [Cronobacter dublinensis] Length = 439 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|222085896|ref|YP_002544427.1| GTP-binding protein [Agrobacterium radiobacter K84] gi|221723344|gb|ACM26500.1| GTP-binding protein [Agrobacterium radiobacter K84] Length = 443 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 27/195 (13%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 207 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 266 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEI-------AKRSSRLIL 135 ++ R + + AD++ V D S + + D+++ + A+ + R++ Sbjct: 267 LPTHLVAAFRATLEEVLEADLILHVRDLSDEDNQAQSADVMRILGDLGIGEAEGAERILE 326 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS----------- 184 + NKID ++PE I K E VSA G G D +++ + Sbjct: 327 VWNKIDRLEPE---AHDAIVQKASTAENVIAVSAMSGEGVDRLMDEISRRLSGVLTETTI 383 Query: 185 TLPLA-----PWVYS 194 TLPL WVY+ Sbjct: 384 TLPLDKLALLSWVYN 398 >gi|257089874|ref|ZP_05584235.1| GTP-binding protein engA [Enterococcus faecalis CH188] gi|312903296|ref|ZP_07762476.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0635] gi|256998686|gb|EEU85206.1| GTP-binding protein engA [Enterococcus faecalis CH188] gi|310633172|gb|EFQ16455.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0635] gi|315577718|gb|EFU89909.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0630] Length = 436 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ V S RE + +L+ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIIFVA-SGREGITDADELVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E + + F VS + G G DVL+ P Sbjct: 123 -NPEMRNDIYEFY--ALGLGDPFPVSGSHGLGIGDVLDEAVKHFP 164 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 +L+G N GKS+L+N +G IV+ TTR + +E Q + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 TVK 300 >gi|227535137|ref|ZP_03965186.1| GTP-binding protein engA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187182|gb|EEI67249.1| GTP-binding protein engA [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 445 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR +G +VSIV TR + G + +DT GI Sbjct: 15 TLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLG 74 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ + D + + + + +I R+ + ++L +NK+D Sbjct: 75 DEPFLAQIKDQAEIAIDEADVILFLADIESGV-TDADERVAQILYRAKKPVVLAVNKVD- 132 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PER + + + L F E + +S T G G DVL+ + + P Sbjct: 133 -NPERRQDIYDFYS-LGFGEP-YPLSGTHGIGLGDVLDAVLAAFP 174 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G IV+ TTR + + +DT GI Sbjct: 188 SLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKRGK 247 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I +D+V V+++ ++ + + +I+++NK D Sbjct: 248 VYENTEKYAVMRALRAIDRSDVVLFVINAEEGIREQDKKVAGYAHEAGRGIIIVVNKWDT 307 Query: 143 VK 144 V+ Sbjct: 308 VE 309 >gi|163746239|ref|ZP_02153597.1| GTP-binding protein HflX, putative [Oceanibulbus indolifex HEL-45] gi|161380124|gb|EDQ04535.1| GTP-binding protein HflX, putative [Oceanibulbus indolifex HEL-45] Length = 432 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR GA+V T +R +V +I+ DT G + Sbjct: 214 VALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRSLVLPDGPEIILSDTVGFISDL 273 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIA-KRSSRLILILNK 139 + R + + ADI+C V D SH E + N+ D+L + + +R + NK Sbjct: 274 PTELVASFRATLEEVLAADIICHVRDVSHAETEEQAQNVRDILASLGVPKETRSFEVWNK 333 Query: 140 IDCVKPE 146 +D + PE Sbjct: 334 LDLL-PE 339 >gi|77463250|ref|YP_352754.1| GTP-binding protein EngA [Rhodobacter sphaeroides 2.4.1] gi|126462124|ref|YP_001043238.1| GTP-binding protein EngA [Rhodobacter sphaeroides ATCC 17029] gi|221639113|ref|YP_002525375.1| GTP-binding protein EngA [Rhodobacter sphaeroides KD131] gi|332558128|ref|ZP_08412450.1| GTP-binding protein Der [Rhodobacter sphaeroides WS8N] gi|123592083|sp|Q3J2Y1|DER_RHOS4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225847|sp|A3PJF0|DER_RHOS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783164|sp|B9KRT2|DER_RHOSK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77387668|gb|ABA78853.1| Probable GTP-binding protein [Rhodobacter sphaeroides 2.4.1] gi|126103788|gb|ABN76466.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029] gi|221159894|gb|ACM00874.1| GTP-binding protein engA [Rhodobacter sphaeroides KD131] gi|332275840|gb|EGJ21155.1| GTP-binding protein Der [Rhodobacter sphaeroides WS8N] Length = 487 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 5/160 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLIDLRFTVIDTAGLEEV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS M RL+ ++ AD+ ++D + + + ++++ +IL +NK + Sbjct: 64 TDDSLQGRMRRLTERAVEMADVCLFLIDGRVGVTPSDEVFADILRRKNAHVILGVNKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + I + + + +SA G G DD+ + L Sbjct: 124 ----RAGDGGAIEAWSLGLGEPIRLSAEHGEGMDDLYHIL 159 >gi|327470938|gb|EGF16394.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK330] Length = 457 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 9/132 (6%) Query: 18 DNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D +R G A++G N GKS+L+N + +IVT TTR ++ V+ K Sbjct: 212 DTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGV 271 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + +DT GI D ++ + S ++ AD+V LV++ L LL EI++ S Sbjct: 272 PLKLIDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNVSEPLTDQDKQLL-EISQDS 330 Query: 131 SRLILILNKIDC 142 +R++L LNK D Sbjct: 331 NRIVL-LNKTDL 341 >gi|114566850|ref|YP_754004.1| hypothetical protein Swol_1325 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337785|gb|ABI68633.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 441 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 5/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR GA+ +IV TR + + + +DT GI FN Sbjct: 4 VVAIVGRPNVGKSTLFNRLAGARKAIVEDIPGVTRDRLYDSSDWNGREFIIIDTGGIRFN 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + + + + I+ AD++ LV+DS + + + K + ++L NK++ Sbjct: 64 EGDIFAREIKLQAELAIEEADVIVLVLDSREGITAEDEQVANLLRKSNKPVVLAANKVEE 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 K + L+ E + + VSA G+ +++L+ + S Sbjct: 124 FKKQ--LDYYEFYK--LGLGDPIPVSAMHGYNTNELLDAVIS 161 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+LVN +G + IV+ TTR + K + +DT G+ Sbjct: 178 IAIVGRPNVGKSSLVNALLGEERVIVSDVPGTTRDAIDTPFQFKGQNYLLIDTAGMRRKS 237 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K++ + + + I+ AD+V +++D+ + + + ++S I+++NK D Sbjct: 238 RIKETTERYSVIRTLKAIERADVVLIMLDATEGVAEQDKKIAGYVHEQSRANIIVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 LVE 300 >gi|295110181|emb|CBL24134.1| ribosome-associated GTPase EngA [Ruminococcus obeum A2-162] Length = 441 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + V+ + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKSFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + D M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SGDIILSQMREQAQIAIDTADVIVFITDVQQGL-VDSDAKVADMLRRSQKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V+ + +++ E N + I + +SA G D+L+ + P Sbjct: 124 SVQ-KYMMDVYEFYN--LGIGEPIAISAANRTGIGDMLDEIVKEFP 166 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+L+N+ +G IV+ TTR V V K+ + +F+DT G+ Sbjct: 180 IAVVGKPNVGKSSLINKLLGEDRVIVSDIAGTTRDAVDAKVKWKDREYIFIDTAGLRRKG 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + + ++ AD+V +V+D+ + + +R +++ +NK D Sbjct: 240 KIKEELERYSVIRTVTAVERADVVVVVIDATEGVTEQDAKIAGIAHERGKGVVIAVNKWD 299 Query: 142 CVKPE 146 V+ + Sbjct: 300 AVEKD 304 >gi|229545835|ref|ZP_04434560.1| GTP-binding protein EngA [Enterococcus faecalis TX1322] gi|229550027|ref|ZP_04438752.1| GTP-binding protein EngA [Enterococcus faecalis ATCC 29200] gi|255972808|ref|ZP_05423394.1| GTP-binding protein engA [Enterococcus faecalis T1] gi|256619052|ref|ZP_05475898.1| GTP-binding protein engA [Enterococcus faecalis ATCC 4200] gi|256762478|ref|ZP_05503058.1| GTP-binding protein engA [Enterococcus faecalis T3] gi|256853114|ref|ZP_05558484.1| GTP-binding protein engA [Enterococcus faecalis T8] gi|256958969|ref|ZP_05563140.1| GTP-binding protein engA [Enterococcus faecalis DS5] gi|256965136|ref|ZP_05569307.1| GTP-binding protein engA [Enterococcus faecalis HIP11704] gi|257079000|ref|ZP_05573361.1| GTP-binding protein engA [Enterococcus faecalis JH1] gi|257085194|ref|ZP_05579555.1| GTP-binding protein engA [Enterococcus faecalis Fly1] gi|257086755|ref|ZP_05581116.1| GTP-binding protein engA [Enterococcus faecalis D6] gi|257416082|ref|ZP_05593076.1| GTP-binding protein engA [Enterococcus faecalis AR01/DG] gi|257422630|ref|ZP_05599620.1| GTP-binding protein engA [Enterococcus faecalis X98] gi|294781352|ref|ZP_06746695.1| ribosome-associated GTPase EngA [Enterococcus faecalis PC1.1] gi|300861220|ref|ZP_07107307.1| ribosome-associated GTPase EngA [Enterococcus faecalis TUSoD Ef11] gi|307271029|ref|ZP_07552312.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4248] gi|307273236|ref|ZP_07554482.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0855] gi|307274973|ref|ZP_07556136.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2134] gi|307289094|ref|ZP_07569050.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0109] gi|312900749|ref|ZP_07760046.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0470] gi|312951482|ref|ZP_07770378.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0102] gi|229304833|gb|EEN70829.1| GTP-binding protein EngA [Enterococcus faecalis ATCC 29200] gi|229309034|gb|EEN75021.1| GTP-binding protein EngA [Enterococcus faecalis TX1322] gi|255963826|gb|EET96302.1| GTP-binding protein engA [Enterococcus faecalis T1] gi|256598579|gb|EEU17755.1| GTP-binding protein engA [Enterococcus faecalis ATCC 4200] gi|256683729|gb|EEU23424.1| GTP-binding protein engA [Enterococcus faecalis T3] gi|256711573|gb|EEU26611.1| GTP-binding protein engA [Enterococcus faecalis T8] gi|256949465|gb|EEU66097.1| GTP-binding protein engA [Enterococcus faecalis DS5] gi|256955632|gb|EEU72264.1| GTP-binding protein engA [Enterococcus faecalis HIP11704] gi|256987030|gb|EEU74332.1| GTP-binding protein engA [Enterococcus faecalis JH1] gi|256993224|gb|EEU80526.1| GTP-binding protein engA [Enterococcus faecalis Fly1] gi|256994785|gb|EEU82087.1| GTP-binding protein engA [Enterococcus faecalis D6] gi|257157910|gb|EEU87870.1| GTP-binding protein engA [Enterococcus faecalis ARO1/DG] gi|257164454|gb|EEU94414.1| GTP-binding protein engA [Enterococcus faecalis X98] gi|294451582|gb|EFG20041.1| ribosome-associated GTPase EngA [Enterococcus faecalis PC1.1] gi|295112973|emb|CBL31610.1| ribosome-associated GTPase EngA [Enterococcus sp. 7L76] gi|300850259|gb|EFK78009.1| ribosome-associated GTPase EngA [Enterococcus faecalis TUSoD Ef11] gi|306499803|gb|EFM69164.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0109] gi|306508421|gb|EFM77528.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2134] gi|306510221|gb|EFM79245.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0855] gi|306512527|gb|EFM81176.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4248] gi|310630448|gb|EFQ13731.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0102] gi|311292230|gb|EFQ70786.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0470] gi|315027277|gb|EFT39209.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2137] gi|315029396|gb|EFT41328.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4000] gi|315033958|gb|EFT45890.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0017] gi|315036967|gb|EFT48899.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0027] gi|315144428|gb|EFT88444.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2141] gi|315147253|gb|EFT91269.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4244] gi|315152495|gb|EFT96511.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0031] gi|315155773|gb|EFT99789.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0043] gi|315158060|gb|EFU02077.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0312] gi|315160456|gb|EFU04473.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0645] gi|315164003|gb|EFU08020.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1302] gi|315169046|gb|EFU13063.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1341] gi|315169716|gb|EFU13733.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1342] gi|323480712|gb|ADX80151.1| small GTP-binding domain protein [Enterococcus faecalis 62] gi|327535121|gb|AEA93955.1| ribosome-associated GTPase EngA [Enterococcus faecalis OG1RF] Length = 436 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ V S RE + +L+ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIIFVA-SGREGITDADELVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E + + F VS + G G DVL+ P Sbjct: 123 -NPEMRNDIYEFY--ALGLGDPFPVSGSHGLGIGDVLDEAVKHFP 164 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 +L+G N GKS+L+N +G IV+ TTR + +E Q + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 TVK 300 >gi|122700645|emb|CAL87911.1| GTPase [Helicobacter pylori] gi|122702599|emb|CAL88489.1| GTPase [Helicobacter pylori] gi|122702781|emb|CAL88580.1| GTPase [Helicobacter pylori] gi|122702785|emb|CAL88582.1| GTPase [Helicobacter pylori] gi|242255848|gb|ACS88908.1| GTPase [Helicobacter pylori] gi|242255854|gb|ACS88911.1| GTPase [Helicobacter pylori] gi|242255870|gb|ACS88919.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNLNP 170 >gi|302390344|ref|YP_003826165.1| GTP-binding proten HflX [Thermosediminibacter oceani DSM 16646] gi|302200972|gb|ADL08542.1| GTP-binding proten HflX [Thermosediminibacter oceani DSM 16646] Length = 417 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 17/189 (8%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E+ +++ ++ + + ++LVG TNAGKSTL+N GA VS T R + Sbjct: 178 ELERIRKNRKLLRSSRKYPVISLVGYTNAGKSTLMNALTGAGVSSNDRLFDTLDPTTRAL 237 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHR----ELKVN 118 + +++ DT G + H+++ + + +K AD++ VVD+ E Sbjct: 238 LLPDGRRVLLSDTVGFI--RKLPHEIVEAFKATLEEVKEADLLIHVVDASSPKADEEIST 295 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + +LKEI + IL LNKID V L+ E +SA G D + Sbjct: 296 VKSVLKEIGAENIPTILALNKIDRVNHRELITGE---------ENVVEISALCGTNLDIL 346 Query: 179 LNYLCSTLP 187 +C LP Sbjct: 347 REKICQLLP 355 >gi|158334891|ref|YP_001516063.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017] gi|205829048|sp|B0CBB0|MNME_ACAM1 RecName: Full=tRNA modification GTPase mnmE gi|158305132|gb|ABW26749.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017] Length = 455 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 3/137 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA++G N GKS+L+N + +IVT TTR +V + I LDT G Sbjct: 218 RNGLTVAIIGRPNVGKSSLLNAWCRCDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V L +D+ + L + A + LILI+NK Sbjct: 278 IRETEDQVEQIGVTRSHQAAQSADLVLLTIDASVGWTSDDQQLYQ--AFQDLPLILIVNK 335 Query: 140 IDCVKPERLLEQAEIAN 156 +D V E+++ IA Sbjct: 336 VDLVPQEQVVYPEAIAQ 352 >gi|91785808|ref|YP_561014.1| tRNA modification GTPase TrmE [Burkholderia xenovorans LB400] gi|122970036|sp|Q13SH7|MNME_BURXL RecName: Full=tRNA modification GTPase mnmE gi|91689762|gb|ABE32962.1| tRNA modification GTPase trmE [Burkholderia xenovorans LB400] Length = 464 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLARIRERLGHVLSEARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ + +D K+ I +W+ I+ AD+V ++D+ + Sbjct: 261 TRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTWNEIERADVVLHLLDARTGMT 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKID 141 V + IA R ++ +LNK D Sbjct: 321 VED----EAIAGRFPAGVPVVRVLNKTD 344 >gi|29376112|ref|NP_815266.1| GTP-binding protein EngA [Enterococcus faecalis V583] gi|227518740|ref|ZP_03948789.1| GTP-binding protein EngA [Enterococcus faecalis TX0104] gi|227553350|ref|ZP_03983399.1| GTP-binding protein EngA [Enterococcus faecalis HH22] gi|257419285|ref|ZP_05596279.1| GTP-binding protein engA [Enterococcus faecalis T11] gi|37999534|sp|Q834T4|DER_ENTFA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29343574|gb|AAO81336.1| GTPase, putative [Enterococcus faecalis V583] gi|227073821|gb|EEI11784.1| GTP-binding protein EngA [Enterococcus faecalis TX0104] gi|227177519|gb|EEI58491.1| GTP-binding protein EngA [Enterococcus faecalis HH22] gi|257161113|gb|EEU91073.1| GTP-binding protein engA [Enterococcus faecalis T11] gi|315575878|gb|EFU88069.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0309B] gi|315580530|gb|EFU92721.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0309A] Length = 436 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGVRISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ V S RE + +L+ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIIFVA-SGREGITDADELVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E + + F VS + G G DVL+ P Sbjct: 123 -NPEMRNDIYEFY--ALGLGDPFPVSGSHGLGIGDVLDEAVKHFP 164 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 +L+G N GKS+L+N +G IV+ TTR + +E Q + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 TVK 300 >gi|260553777|ref|ZP_05826047.1| tRNA modification GTPase mnmE [Acinetobacter sp. RUH2624] gi|260405081|gb|EEW98581.1| tRNA modification GTPase mnmE [Acinetobacter sp. RUH2624] Length = 454 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 206 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ L++ + Sbjct: 266 GLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLQLAQEYFAEH 325 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI + F + VSA + G +++ + + Sbjct: 326 IEPR--RLMLIGNKCDLTG-----QSAEIGDYQGF--RHITVSAKQEMGVQGLVDAITAH 376 Query: 186 LPLAP 190 P Sbjct: 377 AGFHP 381 >gi|229170187|ref|ZP_04297873.1| tRNA modification GTPase mnmE [Bacillus cereus AH621] gi|228613288|gb|EEK70427.1| tRNA modification GTPase mnmE [Bacillus cereus AH621] Length = 458 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGISTAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V +VV+ L DL A + I+I+NK Sbjct: 278 IRETEDIVERIGVERSKEMMSQADLVLIVVNYSEALTNEDEDLFH--AVQGKDFIVIVNK 335 Query: 140 IDC---VKPERLLEQAEIANKLV 159 D + ER+ + A + N+++ Sbjct: 336 TDLPQEIDMERVTDLA-VGNRVI 357 >gi|190171262|gb|ACE63701.1| ThdF [Cronobacter dublinensis] gi|190171264|gb|ACE63702.1| ThdF [Cronobacter dublinensis] Length = 439 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|145344534|ref|XP_001416786.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577012|gb|ABO95079.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 489 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 8/198 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG+ N GKS+++N G +IV+ TTR ++ + +++ DT G+ + Sbjct: 239 VALVGSPNVGKSSMLNALAGRDAAIVSPHAGTTRDVLEVSLELGGYKVIVSDTAGLRETE 298 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D KL I + + AD+V + D+ + NI LK + ++ + NK D + Sbjct: 299 DDVEKLGIARALERAEDADVVVALADATNDAS-NID--LKALNLSKKTIVNVWNKSDALS 355 Query: 145 PERLLEQAEIANKLVFIE-KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 + E EI N+ +T +VS G G D ++ L T +A D SD Sbjct: 356 DGQTRELMEIENETAADGYETAVVSCLTGAGLDGFISTL--TRIVAQKCTIGDDASDAN- 412 Query: 204 FHFTAEITREKLFLHLHK 221 T ITR + ++L + Sbjct: 413 -DSTLAITRSRHRVNLAR 429 >gi|325695118|gb|EGD37020.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK150] Length = 436 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|312876169|ref|ZP_07736156.1| tRNA modification GTPase TrmE [Caldicellulosiruptor lactoaceticus 6A] gi|311796984|gb|EFR13326.1| tRNA modification GTPase TrmE [Caldicellulosiruptor lactoaceticus 6A] Length = 455 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG +VG N GKS+L+NR + + +IVT TTR ++ ++ + I+ DT G Sbjct: 218 KSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +D K+ ++ + +I+ AD+V +++S L+ ++ ++ + I + R I+++NK Sbjct: 278 VRKTEDVVEKIGVKKTLESIERADLVLFMIESSGILQEDL-EIFETI--KDKRFIVLVNK 334 Query: 140 ID 141 ID Sbjct: 335 ID 336 >gi|325954552|ref|YP_004238212.1| GTP-binding protein engA [Weeksella virosa DSM 16922] gi|323437170|gb|ADX67634.1| GTP-binding protein engA [Weeksella virosa DSM 16922] Length = 435 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 5/126 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A+VG NAGKSTL+N +G + +IVT TTR + + ++ + V +DT G+ Sbjct: 178 IAIVGRPNAGKSTLINALLGEERNIVTDVAGTTRDSIETLYNKFGHKFVLVDTAGMRKKG 237 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A+D ++R + TI+ D+ LVVD R L+ ++L + +++++NK Sbjct: 238 KVAEDLEFYSVMR-AIRTIEECDVCVLVVDGSRGLEAQDLNILYLAERNRKGVVILVNKW 296 Query: 141 DCVKPE 146 D V+ + Sbjct: 297 DLVEKQ 302 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 16/186 (8%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR V + +IV TR G + +DT G + Sbjct: 2 SNIVAIVGRPNVGKSTFFNRLVQKRQAIVDDVSGVTRDRHYGKSDWNGVEFTVIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 ++D++ + + + + A+++ +VD+ V + D+ KE++ K + L+ Sbjct: 62 VGSEDTFEEEIRKQVELAVDEANVILFMVDNQ----VGLTDMDKEVSHLLRKAKKKTFLV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NK+D K L+ + L F +K F ++A G G D+L+ + + + D Sbjct: 118 VNKVDTNKN---LDDSYEFYTLGF-DKIFTIAAISGSGTGDLLDEVVDSFETKEF---ED 170 Query: 197 QISDLP 202 + LP Sbjct: 171 KFEGLP 176 >gi|282859538|ref|ZP_06268643.1| tRNA modification GTPase TrmE [Prevotella bivia JCVIHMP010] gi|282587766|gb|EFB92966.1| tRNA modification GTPase TrmE [Prevotella bivia JCVIHMP010] Length = 446 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 7/126 (5%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R VA++G TN GKSTL+N+ +G + +IV++ TTR ++ F+DT GI Sbjct: 215 RGISVAIIGKTNVGKSTLLNQLLGEERAIVSNIEGTTRDVIEDTTDINGITFRFIDTAGI 274 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILN 138 D +L I+ ++ + +A IV ++D + EI +R ++++ N Sbjct: 275 RETTDVVEQLGIQRTYKELDNAQIVMWILDIDP-----TQEEYNEIKERVGEKPIVVVRN 329 Query: 139 KIDCVK 144 KID +K Sbjct: 330 KIDTIK 335 >gi|259910299|ref|YP_002650655.1| tRNA modification GTPase TrmE [Erwinia pyrifoliae Ep1/96] gi|224965921|emb|CAX57454.1| tRNA modification GTPase [Erwinia pyrifoliae Ep1/96] Length = 454 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADHVLFMVDG 305 >gi|156936085|ref|YP_001440001.1| tRNA modification GTPase TrmE [Cronobacter sakazakii ATCC BAA-894] gi|166200478|sp|A7MN03|MNME_ENTS8 RecName: Full=tRNA modification GTPase mnmE gi|156534339|gb|ABU79165.1| hypothetical protein ESA_03979 [Cronobacter sakazakii ATCC BAA-894] Length = 454 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 305 >gi|83942367|ref|ZP_00954828.1| GTP-binding protein HflX [Sulfitobacter sp. EE-36] gi|83846460|gb|EAP84336.1| GTP-binding protein HflX [Sulfitobacter sp. EE-36] Length = 412 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 8/167 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR GA V T +R +V +I+ DT G + Sbjct: 194 VALVGYTNAGKSTLFNRMTGADVMAKDMLFATLDPTMRSLVLPDGPEIILSDTVGFISDL 253 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKV---NIHDLLKEIA-KRSSRLILILNK 139 + R + + ADI+C V D SH E + N+ D+L + + +R + NK Sbjct: 254 PTELVAAFRATLEEVLAADIICHVRDISHAETESQARNVRDILTSLGVPKDTRSFEVWNK 313 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +D + A + + + +SA G G D++ + L Sbjct: 314 LDQLD---DDRAAAVRARAQRDDSVLAISAITGEGLDELQAVIAEAL 357 >gi|312866411|ref|ZP_07726629.1| ribosome biogenesis GTPase Der [Streptococcus downei F0415] gi|311098105|gb|EFQ56331.1| ribosome biogenesis GTPase Der [Streptococcus downei F0415] Length = 436 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + +D++ VV S +E + + + +I R+ + +IL +NK+D Sbjct: 65 DAPFMEQIKHQADIAMTESDVIVFVV-SGKEGVTDADEYVAKILYRTHKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + + + + + VS+T G G DVL+ + LP Sbjct: 123 -NPEMRNDIYDFY--ALGLGDPYPVSSTHGIGTGDVLDAIVENLP 164 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 12/127 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR +I V E+ + +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINALLGEDRVIASPVAGTTRDAIDTDFVDEEGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 Y K I S I +D+V +V+++ I D K IA + +++++ Sbjct: 238 KVYENTEKYSIMRSMRAIDRSDVVLMVINAEE----GIRDYDKRIAGFAHEAGKGIVIVV 293 Query: 138 NKIDCVK 144 NK D +K Sbjct: 294 NKWDTIK 300 >gi|304313413|ref|YP_003813011.1| tRNA modification GTPase [gamma proteobacterium HdN1] gi|301799146|emb|CBL47389.1| tRNA modification GTPase [gamma proteobacterium HdN1] Length = 464 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 8/127 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+N+ G +IVT TTR ++ + + DT G+ + Sbjct: 224 VVLAGKPNAGKSSLLNQLAGTDRAIVTPIAGTTRDVLHEHIHLDGMPLHISDTAGLRESA 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLILI 136 D + IR +W I+ AD + L+ D+ L ++ I+ L + +R+ ++ Sbjct: 284 DEVEQEGIRRAWQEIERADRILLLTDASEHLDLHPAKFWPEFINTLHERAPSAMNRMTIV 343 Query: 137 LNKIDCV 143 NKID Sbjct: 344 RNKIDLA 350 >gi|323350996|ref|ZP_08086653.1| ribosome-associated GTPase EngA [Streptococcus sanguinis VMC66] gi|322122720|gb|EFX94429.1| ribosome-associated GTPase EngA [Streptococcus sanguinis VMC66] Length = 436 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|302846043|ref|XP_002954559.1| hypothetical protein VOLCADRAFT_121318 [Volvox carteri f. nagariensis] gi|300260231|gb|EFJ44452.1| hypothetical protein VOLCADRAFT_121318 [Volvox carteri f. nagariensis] Length = 269 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI-- 80 VA+VG N GKS+L+N G + SIV TTR V V+ Q + +DT GI Sbjct: 51 AVAIVGRPNVGKSSLLNAIAGEERSIVCDLSGTTRDAVDTRVTLPGGQRLTLIDTAGIRK 110 Query: 81 ----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 ++ D +L + + ++ AD+ LV+D+ + L + A ++++ Sbjct: 111 RSRVADSPDGAEQLSVDRAMRAVRRADVAVLVIDAVEGVTQQDFRLSELFASEGKSVVVV 170 Query: 137 LNKIDCVKP-----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +NK D V P E++ E + + V SA G +DVL + Sbjct: 171 VNKWDRVDPRIWSVEKMAENVKTQLRHVSWASVVCTSAISGRHVEDVLEAV 221 >gi|190171260|gb|ACE63700.1| ThdF [Cronobacter dublinensis] Length = 439 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|55981360|ref|YP_144657.1| GTP-binding protein EngA [Thermus thermophilus HB8] gi|55772773|dbj|BAD71214.1| GTP-binding protein [Thermus thermophilus HB8] Length = 431 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 10/127 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKS+L+N +G + IV+ + TTR + + V +DT GI Sbjct: 176 LAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVEFFFGGQRFVLVDTAGIRKRP 235 Query: 85 DSY-HKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++ +L IR S + AD+V LVVD RELK L E R ++L++ K Sbjct: 236 ENLVEELAIRRSLRAMDEADVVLLVVDPFQVGDRELK-----LANEALDRGKPVLLVITK 290 Query: 140 IDCVKPE 146 D V E Sbjct: 291 WDLVDKE 297 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L NR + + ++V TR + G+V + + +DT G+++ Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG- 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + K + ++ A++V VD EL +++ + + ++ +IL+ K+D K Sbjct: 63 DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 Query: 145 PE 146 E Sbjct: 123 HE 124 >gi|328946827|gb|EGG40964.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1087] Length = 436 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|284929261|ref|YP_003421783.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A] gi|284809705|gb|ADB95402.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A] Length = 457 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 20/170 (11%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG +A++G N GKS+L+N + + +IVT TTR IV + K I LDT G Sbjct: 220 RSGLKIAILGRPNVGKSSLLNSWSRSNKAIVTDLPGTTRDIVESNLIIKNIPIKVLDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILI 136 I + + K+ ++ + AD++ L +D+ E + I+ +K + +ILI Sbjct: 280 IRHTDNQIEKIGVQRTHLAANQADLILLTIDAQIGWTEEETEIYKKIKHLP-----IILI 334 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD----VLNYL 182 +NKID P+ + +E I++ +SA + G D +LN++ Sbjct: 335 VNKIDLNVPDLSIIPSE-------IQEVIKISAIQNLGIDSIEEAILNFI 377 >gi|221126301|ref|XP_002165330.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 498 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 7/133 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 264 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQETIQIEGVPLHIIDTAGLRASD 323 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-------IHDLLKEIAKRSSRLILIL 137 D+ K+ I +W I+ AD V + D R + I + E S +I + Sbjct: 324 DAVEKIGIERAWQAIEAADAVLFLHDLTRSSAIEYIAADADIAGAIAEKLPASIPVIHVW 383 Query: 138 NKIDCVKPERLLE 150 NK D PE LE Sbjct: 384 NKSDAATPETGLE 396 >gi|159028658|emb|CAO88129.1| engA [Microcystis aeruginosa PCC 7806] Length = 452 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPG-I 80 VA++G N GKSTLVNR G + +IV + T R+ +++ QIV DT G + Sbjct: 5 VVAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQIV--DTGGLV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 FN + L+ + + A + VVD + ++ + +++ ++L +NK Sbjct: 63 FNDDSEFLPLIREQALIALAEASVAIFVVDGQAGITAGDREIAAWLRQQNVPILLAVNKC 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + V+ + +L+ E + I + F +SA G G ++L+ L LP Sbjct: 123 ESVE-QGILQATEFWE--LAIGEPFPISAIHGSGTGELLDALIKYLP 166 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-FLDTPGIFNA 83 VA++G N GKS+L+N G + +IV+ TTR + ++ E+E Q+ +DT GI Sbjct: 179 VAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDSIDTLI-EREGQVYRLIDTAGIRRK 237 Query: 84 KDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ + I ++ I+ +D+V V+D + L I + ++L++NK Sbjct: 238 KNVDYGAEFFSINRAFKAIRRSDVVLFVIDVLDGVTEQDLKLAGRIIEEGRAVVLVVNKW 297 Query: 141 DCVK 144 D V+ Sbjct: 298 DAVE 301 >gi|332359145|gb|EGJ36966.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK49] Length = 436 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|261840127|gb|ACX99892.1| tRNA modification GTPase TrmE [Helicobacter pylori 52] Length = 450 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 3/142 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNTQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DIV V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFN 312 Query: 122 LLKEIAKRSSRLILILNKIDCV 143 L+ + + I++LNK D V Sbjct: 313 LIDTLNRTKKPCIVVLNKNDLV 334 >gi|323341065|ref|ZP_08081313.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644] gi|323091486|gb|EFZ34110.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644] Length = 462 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ALVG N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 222 REGLATALVGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVSGVPLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I+ +D+V LV+++ L +L++ + I+ILNK Sbjct: 282 IRETDDKVEKIGVERSKKAIEQSDLVLLVLNAAESLTKEDLELIR--LTNDKKRIIILNK 339 Query: 140 IDCVKPERLLEQAEIA 155 D E L++ E+A Sbjct: 340 TDL---EEKLDRKELA 352 >gi|78045106|ref|YP_360738.1| GTP-binding protein EngA [Carboxydothermus hydrogenoformans Z-2901] gi|123575819|sp|Q3AAU6|DER_CARHZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77997221|gb|ABB16120.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 440 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 13/168 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ---IVFLDTPGI 80 VA+VG N GKSTL NR +G +++IV TR + SE E Q +DT G+ Sbjct: 5 VVAIVGRPNVGKSTLFNRIIGERIAIVEDTPGVTRD---RLYSEAEWQGKVFDLIDTGGL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++D + I AD++ V DS + + K + K +IL+ NK+ Sbjct: 62 EFSEDLITTKVREQIEKAINEADLILFVCDSREGITSTDEAVAKNLRKSDKPVILVANKV 121 Query: 141 D--CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D P + + + + F VSA G D+L+ + S L Sbjct: 122 DDYLNPPANFYDLYRLG-----LGEPFPVSAANGTNVGDLLDLVISKL 164 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 13/184 (7%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 I+ N +D+ +D + +A+VG N GKS+LVN +G + +V+ TTR + + Sbjct: 161 ISKLNFPEDY-EDENPVVKIAVVGRPNVGKSSLVNALLGEERVVVSDIPGTTRDAIDTPM 219 Query: 66 SEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + + +DT G+ ++ + + S I+ AD+ LV+ + + + Sbjct: 220 WYQGKPYLLIDTAGMRRKSRIEEDLERYSVNRSIKAIRRADVALLVISAEEGVTEQDKKI 279 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFM-------VSATKGHGC 175 I + +I+++NK D + E+ + A+ + ++ E F+ VSA G Sbjct: 280 AGLIHEYGRGVIIVVNKWDLI--EKDAKTADRYKEHIYFELGFLKYAPVIFVSAKTGQRL 337 Query: 176 DDVL 179 + ++ Sbjct: 338 NKLM 341 >gi|46577354|sp|Q7MQK6|MNME_VIBVY RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ I +W I+ AD V +VD Sbjct: 278 DEVEKIGIERAWDEIRQADRVLFMVDG 304 >gi|333024032|ref|ZP_08452096.1| putative ATP/GTP-binding protein [Streptomyces sp. Tu6071] gi|332743884|gb|EGJ74325.1| putative ATP/GTP-binding protein [Streptomyces sp. Tu6071] Length = 520 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 15/191 (7%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI +D + R VA+ G TNAGKS+L+NR GA V + T V Sbjct: 277 EIAEMKTGRDLKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 336 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 337 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPAPEEQLA 396 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++E+ I+++NK D P + +L+ +EK + VSA G G + Sbjct: 397 AVREVIREVGATDVPEIVVINKADAADP-------VVLQRLLRVEKHSIAVSARSGQGIE 449 Query: 177 DVLNYLCSTLP 187 ++L + LP Sbjct: 450 ELLALIDEELP 460 >gi|331005663|ref|ZP_08329030.1| GTP-binding protein EngA [gamma proteobacterium IMCC1989] gi|330420521|gb|EGG94820.1| GTP-binding protein EngA [gamma proteobacterium IMCC1989] Length = 482 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + +IV TR G V +E + +F+DT G+ Sbjct: 4 VIALVGRPNVGKSTLFNRLTRRRDAIVADFAGLTRDRQYGEVIWEERRFLFVDTGGLSGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD L + + K + +++++ NK+D Sbjct: 64 EEGIDSAMAEQSLLAIEEADLVLFMVDCKAGLLPSDIAIAKHLRTTEKKVLIVANKVDGH 123 Query: 144 KPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 P+ ++ E+ + + +AT G G + ++ + + LP+ Sbjct: 124 DPDVVIGPFYELG-----LGEIHATTATHGRGVNLLMQQVDTCLPV 164 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 6/183 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVNR +G +V + TTR + +DT GI K Sbjct: 193 IAIVGRPNVGKSTLVNRMLGEDRVVVYDEAGTTRDSIYINYERHGKPYTIIDTAGIRRRK 252 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + K I + +I+ A++V L++D+ + L+ + + L++ LNK D Sbjct: 253 NISLTVEKFSIVKTLQSIEDANVVVLLLDASEGVVDQDLHLMGHVIESGRALVVALNKWD 312 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ++ E + ++E+ +L F++ M +SA G G ++ + A +S + + Sbjct: 313 GLEAEFKEYVKSELERRLRFVDFADMHFISALHGTGVGNLYKSIEKAFASATDRFSTNHL 372 Query: 199 SDL 201 +++ Sbjct: 373 TNV 375 >gi|282856945|ref|ZP_06266200.1| tRNA modification GTPase TrmE [Pyramidobacter piscolens W5455] gi|282585236|gb|EFB90549.1| tRNA modification GTPase TrmE [Pyramidobacter piscolens W5455] Length = 455 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 7/155 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG NAGKS+L+N + +IVT TTR ++ +++ + + +DT GI N Sbjct: 221 VAIVGRPNAGKSSLLNALLKESRAIVTAIPGTTRDVIEAVLTYRGIPLRLVDTAGITENY 280 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + + + + +K AD+ V+D L D + E+A +++LNK D Sbjct: 281 HDEVEAIGVERARAAMKEADVCVWVIDGSEPLHQEDVDRVHELADTPH--LVVLNKADL- 337 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 P+++ E + A L+ VSA KG D++ Sbjct: 338 -PQQISEASLTA--LIPASTVISVSAAKGLRLDEL 369 >gi|190171286|gb|ACE63713.1| ThdF [Cronobacter muytjensii] gi|190171288|gb|ACE63714.1| ThdF [Cronobacter muytjensii] gi|190171292|gb|ACE63716.1| ThdF [Cronobacter muytjensii] gi|190171294|gb|ACE63717.1| ThdF [Cronobacter muytjensii] Length = 439 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|191638373|ref|YP_001987539.1| GTP-binding protein EngA [Lactobacillus casei BL23] gi|301066427|ref|YP_003788450.1| putative GTPase [Lactobacillus casei str. Zhang] gi|238693036|sp|B3WE80|DER_LACCB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190712675|emb|CAQ66681.1| GTP-binding protein engA [Lactobacillus casei BL23] gi|300438834|gb|ADK18600.1| Predicted GTPase [Lactobacillus casei str. Zhang] gi|327382401|gb|AEA53877.1| GTPase family protein [Lactobacillus casei LC2W] gi|327385602|gb|AEA57076.1| GTPase family protein [Lactobacillus casei BD-II] Length = 435 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR +G +VSIV TR + G + +DT GI Sbjct: 5 TLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ + D + + + + +I R+ + ++L +NK+D Sbjct: 65 DEPFLAQIKDQAEIAIDEADVILFLADIESGV-TDADERVAQILYRAKKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PER + + + L F E + +S T G G DVL+ + + P Sbjct: 123 -NPERRQDIYDFYS-LGFGEP-YPLSGTHGIGLGDVLDAVLAAFP 164 Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G IV+ TTR + + +DT GI Sbjct: 178 SLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKRGK 237 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I +D+V V+++ ++ + + +I+++NK D Sbjct: 238 VYENTEKYAVMRALRAIDRSDVVLFVINAEEGIREQDKKVAGYAHEAGRGIIIVVNKWDT 297 Query: 143 VK 144 V+ Sbjct: 298 VE 299 >gi|145301203|ref|YP_001144044.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp. salmonicida A449] gi|166200467|sp|A4STS4|MNME_AERS4 RecName: Full=tRNA modification GTPase mnmE gi|142853975|gb|ABO92296.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp. salmonicida A449] Length = 453 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V+ ++ G V + G NAGKS+L+N G + +IVT T Sbjct: 190 GDLYAIMAELDGVRSEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRESAIVTEIAGT 249 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR ++R + + +DT G+ + D ++ I +W+ I+ AD V +VD Sbjct: 250 TRDVLREHIHLDGMPLHIIDTAGLRDTLDKVEQIGIERAWAEIEQADRVLFMVDGTTTDA 309 Query: 117 VNIHDLLKEIAKRSSR---LILILNKIDCV 143 ++ ++ E R + L ++ NK D Sbjct: 310 IDPREIWPEFVDRLPKDIGLTVVRNKADLT 339 >gi|119508848|ref|ZP_01628000.1| tRNA modification GTPase [Nodularia spumigena CCY9414] gi|119466377|gb|EAW47262.1| tRNA modification GTPase [Nodularia spumigena CCY9414] Length = 463 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 17/132 (12%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------ 73 R+G VA+VG N GKS+L+N + + +IVT TTR +V ESQ+V Sbjct: 223 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV-------ESQLVVGGIPV 275 Query: 74 -FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 LDT GI D K+ + S AD+V L +D+ + ++ ++ R Sbjct: 276 QVLDTAGIRETVDQVEKIGVERSRRAANAADLVLLTIDASAGWTESDQEIYDQVQHRP-- 333 Query: 133 LILILNKIDCVK 144 LIL++NKID V+ Sbjct: 334 LILVINKIDLVE 345 >gi|111225063|ref|YP_715857.1| ATP/GTP-binding protein [Frankia alni ACN14a] gi|111152595|emb|CAJ64336.1| ATP/GTP-binding protein [Frankia alni ACN14a] Length = 491 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 14/192 (7%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ + E K + VA+ G TNAGKS+L+NR GA V + T V Sbjct: 252 ELAGMATVRETKRSARRRGEVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTV 311 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV-- 117 R DT G + H+++ R + + AD++ VVD Sbjct: 312 RRATLPDGRAFTLTDTVGFV--RHLPHQIVEAFRSTLEEVADADLILHVVDGSAPDPAAQ 369 Query: 118 --NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 + ++L +I + ++++NK+D +P L ++A VF VSA G G Sbjct: 370 ISAVREVLNDIDAGNVAELIVVNKVDATEPTVLAGLRQLAPDAVF------VSARTGEGL 423 Query: 176 DDVLNYLCSTLP 187 +++ LC+ +P Sbjct: 424 TALVDALCARVP 435 >gi|329116373|ref|ZP_08245090.1| ribosome biogenesis GTPase Der [Streptococcus parauberis NCFD 2020] gi|326906778|gb|EGE53692.1| ribosome biogenesis GTPase Der [Streptococcus parauberis NCFD 2020] Length = 436 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + +I R+++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAQIAMDEADVIVFVV-SGKEGVTDADEYVSKILYRTNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + +I + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEM---RNDIYDFYALGLGDPYPVSSVHGIGTGDVLDAIVENLPI 165 Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + +++ Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFKDEDGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|291320725|ref|YP_003515990.1| GTP binding protein EngA [Mycoplasma agalactiae] gi|290753061|emb|CBH41037.1| GTP binding protein engA [Mycoplasma agalactiae] Length = 436 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 6/160 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + +A++G N GKSTL NR VG + SI + TR + + +I +DT GI Sbjct: 2 KKNVIAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFTWNGKEINVIDTGGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + ++ + I+ A++V +VD + + + + K +I++ NK+ Sbjct: 62 QIEKKDFQDQILIQAKIAIEEANVVIFIVDGQAAITSDDKMIYSMLQKSGKPIIVVANKL 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D + + + + + F +SA G+G DVL+ Sbjct: 122 DNI------SKFDYGWYSLGADHVFRISALHGNGIGDVLD 155 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N+GKS+L+N SIV+ TTR V+ +V + +I +DT GI Sbjct: 174 LSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVKSVVELRGHKIEIIDTAGITRKS 233 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D L ++ + S++ +D+ +++DS REL ++ + + +I+ +NK D Sbjct: 234 KIDDIVEHLALKRAMSSLDESDLSIVLIDSTRELAHFDARIIGYALENNKPIIICVNKWD 293 Query: 142 CV 143 + Sbjct: 294 LI 295 >gi|260595826|ref|YP_003208397.1| tRNA modification GTPase TrmE [Cronobacter turicensis z3032] gi|260215003|emb|CBA26661.1| tRNA modification GTPase mnmE [Cronobacter turicensis z3032] Length = 454 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 305 >gi|190171290|gb|ACE63715.1| ThdF [Cronobacter muytjensii] Length = 439 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|255975864|ref|ZP_05426450.1| GTP-binding protein engA [Enterococcus faecalis T2] gi|256961938|ref|ZP_05566109.1| GTP-binding protein engA [Enterococcus faecalis Merz96] gi|257082561|ref|ZP_05576922.1| GTP-binding protein engA [Enterococcus faecalis E1Sol] gi|293383006|ref|ZP_06628924.1| ribosome-associated GTPase EngA [Enterococcus faecalis R712] gi|293389505|ref|ZP_06633962.1| ribosome-associated GTPase EngA [Enterococcus faecalis S613] gi|307278085|ref|ZP_07559169.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0860] gi|312907523|ref|ZP_07766514.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 512] gi|312910141|ref|ZP_07768988.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 516] gi|255968736|gb|EET99358.1| GTP-binding protein engA [Enterococcus faecalis T2] gi|256952434|gb|EEU69066.1| GTP-binding protein engA [Enterococcus faecalis Merz96] gi|256990591|gb|EEU77893.1| GTP-binding protein engA [Enterococcus faecalis E1Sol] gi|291079671|gb|EFE17035.1| ribosome-associated GTPase EngA [Enterococcus faecalis R712] gi|291081122|gb|EFE18085.1| ribosome-associated GTPase EngA [Enterococcus faecalis S613] gi|306505482|gb|EFM74668.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0860] gi|310626551|gb|EFQ09834.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 512] gi|311289414|gb|EFQ67970.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 516] gi|315172323|gb|EFU16340.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1346] Length = 436 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ V S RE + +L+ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIIFVA-SGREGITDADELVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E + + F VS + G G DVL+ P Sbjct: 123 -NPEMRNDIYEFY--ALGLGDPFPVSGSHGLGIGDVLDEAVKHFP 164 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 +L+G N GKS+L+N +G IV+ TTR + +E Q + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 TVK 300 >gi|325970663|ref|YP_004246854.1| tRNA modification GTPase mnmE [Spirochaeta sp. Buddy] gi|324025901|gb|ADY12660.1| tRNA modification GTPase mnmE [Spirochaeta sp. Buddy] Length = 442 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 9/121 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G+TNAGKS+L N + + SIV+ TTR + + + I DT G+ + Sbjct: 224 IVLAGSTNAGKSSLFNLLLKQERSIVSPVRGTTRDYIEADLDVQGIPIRLYDTAGLRESD 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D+ IR + I AD+V +VDS L + K R +++ NK D VK Sbjct: 284 DAIESEGIRRTERLIGQADLVVYLVDSTE---------LGHVPKEDERTLVVYNKSDLVK 334 Query: 145 P 145 P Sbjct: 335 P 335 >gi|213962698|ref|ZP_03390959.1| tRNA modification GTPase TrmE [Capnocytophaga sputigena Capno] gi|213954693|gb|EEB66014.1| tRNA modification GTPase TrmE [Capnocytophaga sputigena Capno] Length = 471 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 1/160 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKSTL+N + + +IV+ TTR + + F+DT GI + + Sbjct: 230 VAIVGKPNAGKSTLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQ 289 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + ++ + I+ A ++ + D I +KE + ++ +L+ NK D Sbjct: 290 DQIEAIGVQKAKEKIEKASVILFLFDDKDNTVSEITTFVKENYREGTKYVLLHNKTDLSP 349 Query: 145 PERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLC 183 E EI L T + +SA +G ++ +L Sbjct: 350 EETTAFDDEILQSLKGYTDTLLRISAKEGQNITELKRFLA 389 >gi|72161614|ref|YP_289271.1| GTP-binding protein EngA [Thermobifida fusca YX] gi|71915346|gb|AAZ55248.1| Small GTP-binding protein domain:GTP-binding [Thermobifida fusca YX] Length = 463 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+LVNR +G + ++V TR V + + + +DT G Sbjct: 23 VVAVVGRPNVGKSSLVNRIIGRREAVVEDVPGVTRDRVAYDANWQGREFTLVDTGGWETN 82 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILNK 139 ++ R + + AD++ VVD+ V I D + + + R+++ ++L NK Sbjct: 83 AKGLAAMVARQAEYAAETADVILFVVDA----TVGITDEDEAVTRVLRATKRPVVLAANK 138 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +D P + E+ N + + + + VSA G G D+L+ + +P P Sbjct: 139 VDG--PLGDADAMELWN--LGVGEPYPVSALHGRGIGDLLDAVLDAMPKEP 185 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VALVG N GKS+L+N+ G + +V TTR V +V F+DT GI F Sbjct: 199 VALVGRPNVGKSSLLNKLAGEERVVVDSVAGTTRDAVDELVELGGKTWKFIDTAGIRRRF 258 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A + + ++ A++ +++D+ L ++ ++ + L+L NK D Sbjct: 259 RALQGADYYATMRTATALERAEVAVVLLDASEPLAEQDLRIIDQVIEAGRALVLAFNKWD 318 Query: 142 CVKPER 147 + ER Sbjct: 319 LLDDER 324 >gi|189345964|ref|YP_001942493.1| GTP-binding protein EngA [Chlorobium limicola DSM 245] gi|238692187|sp|B3EFY1|DER_CHLL2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189340111|gb|ACD89514.1| small GTP-binding protein [Chlorobium limicola DSM 245] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 10/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 +ALVG N GKSTL NR + K +IV T V R I+ G K Q + +DT G Sbjct: 5 IALVGRPNVGKSTLFNRILRQKSAIVDSTPGVTRDRHIMPGEWQGK--QFLLMDTGGYCA 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKI 140 A D MI + + I+ AD V + D L + ++ K + + ++ ++ +NK+ Sbjct: 63 ANDVISSSMIEQTLTAIRDADCVIFLTDVRSGLTYDDLEISKLLQRTFQNKQIFFAVNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + P+ ++ + + + +SA G G D+L+ + +LP Sbjct: 123 ES--PQLTIDAESFVS--TGFTRPYFLSAKDGSGVADMLDDILESLP 165 Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 9/142 (6%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 +EH D D S +A+VG N GKS+ VN +G IV+ TTR + K+ Sbjct: 167 SEHTD--DDEDTSVKLAVVGRPNVGKSSFVNALLGTNRHIVSDIPGTTRDAIDSRFIRKQ 224 Query: 70 SQIVFLDTPGI-----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 + V +DT G+ +A ++ + + I+ + +++D+ L+ ++ Sbjct: 225 QEYVLIDTAGLRKRTKIDAGVEFYSSL--RTEKAIERCQVAVVLLDARAGLEKQDLKIIN 282 Query: 125 EIAKRSSRLILILNKIDCVKPE 146 +R ++L++NK D ++ + Sbjct: 283 MAEERKKGVLLLVNKWDLIEKD 304 >gi|315150548|gb|EFT94564.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0012] Length = 436 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ V S RE + +L+ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIIFVA-SGREGITDADELVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E + + F VS + G G DVL+ P Sbjct: 123 -NPEMRNDIYEFY--ALGLGDPFPVSGSHGLGIGDVLDEAVKHFP 164 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 +L+G N GKS+L+N +G IV+ TTR + +E Q + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 TVK 300 >gi|293374951|ref|ZP_06621247.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909] gi|325844341|ref|ZP_08168117.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1] gi|292646428|gb|EFF64442.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909] gi|325489208|gb|EGC91590.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1] Length = 452 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 80/148 (54%), Gaps = 9/148 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N+ + + +IVT+ TTR V G ++ + +DT G Sbjct: 218 RDGIKTVIIGRPNVGKSSLLNQLMREEKAIVTNIAGTTRDTVEGYINIGGLTLNLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D + + S I A++V LV++++ +L + +LL + +R I+ILNK Sbjct: 278 IRDTEDIVEAIGVEKSKKLINEAELVLLVLNNNEKLTADDRELLS-LTNDKNR-IIILNK 335 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMV 167 D E +E+ E+ N +IE + ++ Sbjct: 336 TDL---ETQIERDELPN---YIETSMVL 357 >gi|255525663|ref|ZP_05392596.1| small GTP-binding protein [Clostridium carboxidivorans P7] gi|296185422|ref|ZP_06853832.1| ribosome-associated GTPase EngA [Clostridium carboxidivorans P7] gi|255510649|gb|EET86956.1| small GTP-binding protein [Clostridium carboxidivorans P7] gi|296050256|gb|EFG89680.1| ribosome-associated GTPase EngA [Clostridium carboxidivorans P7] Length = 438 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 5/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G ++SIV TR + + +DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKMAGKRISIVQDTPGVTRDRIYAEAEWLKYNFTIIDTGGIEPEN 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R + ++ A+++ +VD + L ++ + + K ++L++NKID + Sbjct: 66 SDIIISQMRRQATMAVETANVIVFIVDGKQGLTDADKEVAQMLRKSKKPVVLVVNKIDSL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 K E E N + I + +SA++ G D+L+ + S Sbjct: 126 KDED--NAYEFYN--LGIGEPIAISASQALGLGDMLDKVVS 162 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKS+L+N+ +G IV+ TTR + + ++ + +DT G+ Sbjct: 179 IAFVGKPNVGKSSLINKLLGEDRVIVSEIPGTTRDAIDSYLETEQGKFTLIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + +++ I+ AD+ L++D+ + ++ + S +++I+NK D Sbjct: 239 KVKEEIERYSVIRTYTAIERADVCILMLDATHGITDQDEKIIGYAHEMSKAIMVIVNKWD 298 Query: 142 CVKPERLLEQA---EIANKLVFIEKT--FMVSATKGHGCDDVLN 180 V+ + A +I L F+ +SA G VL+ Sbjct: 299 LVEKDTNTMNAFKKQIGMNLSFMSYAPYLFISAKTGQRVQKVLD 342 >gi|255534810|ref|YP_003095181.1| GTP-binding protein EngA [Flavobacteriaceae bacterium 3519-10] gi|255341006|gb|ACU07119.1| GTP-binding protein EngA [Flavobacteriaceae bacterium 3519-10] Length = 436 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 10/183 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 S VA+VG N GKSTL NRF+ + +IV TR G + +DT G Sbjct: 2 SNIVAIVGRPNVGKSTLFNRFLERREAIVDSTAGVTRDRHYGKSDWNGVEFTVIDTGGYE 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNK 139 N +D + + + + + A + +++ L D+ E+ +RS++ + + +NK Sbjct: 62 VNTEDVFQEEITKQVQLAVDEATSIIFMLNVQDGLTDTDQDIY-EMLRRSNKPVYVTINK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 +D E L E + IEK F +S+ G G ++L+ + + P + D Sbjct: 121 VDSATDE--LAATEFYQ--LGIEKYFTLSSATGSGTGELLDAIVNEFPTTEY---KDPFE 173 Query: 200 DLP 202 LP Sbjct: 174 GLP 176 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 + + G N GKSTL N + + +IVT TTR ++ + ++ + V +DT G+ Sbjct: 178 ITIAGRPNVGKSTLTNALLDKQQNIVTDVAGTTRDSIQTLYNKFGHEFVLVDTAGMRRKA 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + S +I+++D+V ++VD+ + ++ K +++++NK D Sbjct: 238 KVKEDLEFYSVMRSIRSIEYSDVVIIMVDATLGWESQDMNIFGLAQKNRKGIVIVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 LVE 300 >gi|122702535|emb|CAL88457.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSTLDL 168 >gi|332284650|ref|YP_004416561.1| GTP-binding protein [Pusillimonas sp. T7-7] gi|330428603|gb|AEC19937.1| GTP-binding protein [Pusillimonas sp. T7-7] Length = 478 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 5/180 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 VALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 9 VVALVGRANVGKSTLFNRITRSRAALVADFSGLTRDRHYGEGRVGEHPFIAVDTGGFEPV 68 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + I +D+V +VD+ + + H++ + + K R+ L +NK + Sbjct: 69 AKDGILLEMARQTQQAIAESDVVIFLVDARAGVNAHDHEIARLLRKSGQRVFLAVNKAEG 128 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 ++ A + + + +SA+ G G +++ S + P + D+ +P Sbjct: 129 MR----YGSATAEFHELGLGEPHAISASHGDGVVELIERALSYMDDLPDAGTDDEPDFMP 184 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 6/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N +G I TTR + +DT G+ Sbjct: 215 LAIVGRPNVGKSTLINTLLGEDRVIAFDMPGTTRDAIEIEFERNGVSYTLIDTAGLRRRG 274 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ ++V L++D+ E+ + + + L++ +NK D Sbjct: 275 KVFEAIEKFSVIKTLQAIEACNVVVLMLDAQTEISDQDAHIAGFVLETGRALVVAINKWD 334 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCD 176 + E R Q + KL F+ K VSA KG G + Sbjct: 335 GLDSEQRERIQRDFDRKLHFLSFAKMHTVSALKGQGVN 372 >gi|283480423|emb|CAY76339.1| tRNA modification GTPase trmE [Erwinia pyrifoliae DSM 12163] Length = 467 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 214 DAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 273 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 274 IDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADHVLFMVDG 318 >gi|239631541|ref|ZP_04674572.1| GTP-binding protein EngA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526006|gb|EEQ65007.1| GTP-binding protein EngA [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 435 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR +G +VSIV TR + G + +DT GI Sbjct: 5 TLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ + D + + + + +I R+ + ++L +NK+D Sbjct: 65 DEPFLAQIKDQAEIAIDEADVILFLADIESGV-TDADERVAQILYRAKKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PER + + + L F E + +S T G G DVL+ + + P Sbjct: 123 -NPERRQDIYDFYS-LGFGEP-YPLSGTHGIGLGDVLDAVLAAFP 164 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G IV+ TTR + + +DT GI Sbjct: 178 SLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKRGK 237 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I +D+V V+++ ++ + + +I+++NK D Sbjct: 238 VYENTEKYAVMRALRAIDRSDVVLFVINAEEGIREQDKKVAGYSHEAGRGIIIVVNKWDT 297 Query: 143 VK 144 V+ Sbjct: 298 VE 299 >gi|122702595|emb|CAL88487.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|146295934|ref|YP_001179705.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166224318|sp|A4XHX9|DER_CALS8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145409510|gb|ABP66514.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 440 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 15/167 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR +G + +IV TR + G + +DT GI Sbjct: 5 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIVGETEWRGITFNVIDTGGIEPY 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILN 138 ++D K M R + I +D++ +VD K + D +E+A R S+ ++L +N Sbjct: 65 SEDIILKQMRRQAQFAIDMSDVIIFMVDG----KTGLTDADREVANMLRVSKKPIVLAVN 120 Query: 139 KIDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 KID + + ++ E E+ + +SA G G DVL+ + S Sbjct: 121 KIDNISEQPIIYEFYELG-----LSDPIPMSAEHGSGVGDVLDAVVS 162 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 10/157 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+LVN +G + IV+ TTR + V + + +DT G+ Sbjct: 179 VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSYVEFEGIPLTLIDTAGLRRKS 238 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + M+R + S I+ +DI +++D + + + I+ +NK Sbjct: 239 KIYDNIERYSMLR-TISAIERSDICVILLDGTEPVSEQDAKIAGYAYEAGKGCIIAVNKW 297 Query: 141 DCV-KPERLLEQ--AEIANKLVFIE--KTFMVSATKG 172 D V K E+ ++ +I KL F++ +SA G Sbjct: 298 DAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTG 334 >gi|328958785|ref|YP_004376171.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4] gi|328675109|gb|AEB31155.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4] Length = 462 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ +S K + +DT G Sbjct: 222 RDGLATAIIGRPNVGKSSLLNYLLDEEKAIVTDIAGTTRDVIEEYISVKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD+V LV + L + L++ A I+ILNK Sbjct: 282 IRETEDIIERIGVERSRQALSDADLVLLVFNQSEPLTIEDKALIE--ATSQHHRIIILNK 339 Query: 140 IDCVKPERL 148 +D P +L Sbjct: 340 MDL--PNKL 346 >gi|317453521|emb|CBL87870.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER+ + I K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERVYAFSSFG-----IPKSFNISVSHNRGISALIDAILNTLNL 168 >gi|317490873|ref|ZP_07949309.1| ribosome-associated GTPase EngA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920420|gb|EFV41743.1| ribosome-associated GTPase EngA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 495 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 54/123 (43%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVSGHEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 ENGVETHMAEQSLMAIEEADIVLFMVDARAGLMPADEGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 210 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ +++ LV+D+ + LL I L++++NK D Sbjct: 270 KVTDTVEKFSVIKTLQAIEDSNVALLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + E+ + +L F++ + +SA G G ++ Y C+T Sbjct: 330 GLSEDVKTQVKEMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCAT 381 >gi|254483166|ref|ZP_05096399.1| tRNA modification GTPase TrmE [marine gamma proteobacterium HTCC2148] gi|214036537|gb|EEB77211.1| tRNA modification GTPase TrmE [marine gamma proteobacterium HTCC2148] Length = 460 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 47/85 (55%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ N+ D Sbjct: 225 IAGKPNAGKSSLLNALSGQDTAIVTAIEGTTRDVLREHIQIDGMPLHIVDTAGLRNSADE 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDS 111 K IR +W+ I+ AD + LVVD Sbjct: 285 VEKEGIRRAWNEIESADHILLVVDG 309 >gi|146340795|ref|YP_001205843.1| putative GTP-binding protein (hflX) [Bradyrhizobium sp. ORS278] gi|146193601|emb|CAL77618.1| putative GTP-binding protein (hflX) [Bradyrhizobium sp. ORS278] Length = 459 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 7/173 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R I + + DT G + Sbjct: 227 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRAISLPHGGKAMLSDTVGFISN 286 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA---KRSSRLILI 136 + R + + AD++ V D SH + + HD +L ++ + + +I + Sbjct: 287 LPTQLVAAFRATLEEVLEADVILHVRDMSHEDAEAQQHDVELVLSQLGIDPEATDTIIEV 346 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 NKID + A IA + FMVSA G G D +L + L A Sbjct: 347 WNKIDRLDDAARENLANIAARRPPERPCFMVSAETGEGVDALLQAIEDRLAAA 399 >gi|332530165|ref|ZP_08406113.1| GTP-binding protein Der [Hylemonella gracilis ATCC 19624] gi|332040357|gb|EGI76735.1| GTP-binding protein Der [Hylemonella gracilis ATCC 19624] Length = 444 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR + +IV TR G + + + +DT G Sbjct: 4 VLALVGRPNVGKSTLFNRLTQTRDAIVADYAGLTRDRHYGNGRQGRREFIVIDTGGFEPT 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A+ +K M + + AD V VVD+ L HD+ + K +L NK + Sbjct: 64 AETGIYKEMANQTRQAVAEADAVIFVVDARAGLSAQDHDIANYLRKLGKPCVLTANKAEG 123 Query: 143 VKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++ E A++A + + + VSA G G +++ L L Sbjct: 124 MQ-----EGAQLAEFYELGLGEVLPVSAAHGQGLRTLVDQALEPLNL 165 Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK- 84 A+ G N GKSTL+N ++G + I TTR +R + + +DT G+ Sbjct: 182 AVAGRPNVGKSTLINTWLGEERLIAFDMPGTTRDAIRVPFERQGQKFELIDTAGLRRKGR 241 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ K + + I+ A++V L++D+ + + + I + ++L +NK D Sbjct: 242 VFEAVEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAVNKWDA 301 Query: 143 V 143 V Sbjct: 302 V 302 >gi|262392791|ref|YP_003284645.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. Ex25] gi|262336385|gb|ACY50180.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. Ex25] Length = 453 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + D+ + R + + +I NK D Sbjct: 278 DEVEKIGIERAWDEIAQADRVLFMVDGTTTDATDPKDIWPDFVDRLPDNIGITVIRNKAD 337 Query: 142 CVKPE 146 E Sbjct: 338 QTGEE 342 >gi|122700647|emb|CAL87912.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNVLNLNP 170 >gi|307298711|ref|ZP_07578514.1| tRNA modification GTPase TrmE [Thermotogales bacterium mesG1.Ag.4.2] gi|306915876|gb|EFN46260.1| tRNA modification GTPase TrmE [Thermotogales bacterium mesG1.Ag.4.2] Length = 439 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 10/137 (7%) Query: 18 DNSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 + SR+G V A+VG TN GKSTL+N + +IV+ TTR + ++ Sbjct: 202 EKSRNGVVISQGIKTAIVGETNVGKSTLLNALLKRDRAIVSEIPGTTRDTIEEDLNIGGV 261 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT GI A++ L I S I+ A++V L+ D H DL +E+ + Sbjct: 262 LFRVIDTAGIRQAENEIEVLGIERSLKAIEEAELVILLRDPHNP---ESKDLEEELRNKG 318 Query: 131 SRLILILNKIDCVKPER 147 RLI+ NK D K E+ Sbjct: 319 KRLIVAANKSDIRKVEQ 335 >gi|290956958|ref|YP_003488140.1| GTP-ase [Streptomyces scabiei 87.22] gi|260646484|emb|CBG69581.1| putative GTP-ase [Streptomyces scabiei 87.22] Length = 498 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 12/191 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + ++ VA+ G TNAGKS+L+NR GA V + T V Sbjct: 255 EIAEMKTGREIKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 314 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + AD++ VVD SH E Sbjct: 315 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDADLILHVVDGSHPAPEEQLA 374 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++++ I+++NK D P L +L+ +EK + VSA G G Sbjct: 375 AVREVIRDVGATKVPEIVVINKADAADPLTL-------QRLLRVEKRSIAVSARSGQGIQ 427 Query: 177 DVLNYLCSTLP 187 ++L + + LP Sbjct: 428 ELLALIDNELP 438 >gi|239997025|ref|ZP_04717549.1| GTP-binding protein EngA [Alteromonas macleodii ATCC 27126] Length = 481 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 14/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G ++ Q + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEKRQFIVVDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ M + S I+ AD+V +VD+ + I D L+ I K ++ ++ NK+ Sbjct: 64 EEGIDAEMAQQSLLAIEEADVVLFLVDARAGMLPADQGIADHLRRINK---KVFVVANKV 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD----DVLNYLCSTLP 187 D + + E AE + + + ++A G G D L L S P Sbjct: 121 DGIDGDS--ESAEFYS--LGLGDIKQIAAAHGRGVSQLLQDALKPLESDFP 167 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR V + E + + +DT G+ K Sbjct: 196 LAIVGKPNVGKSTLTNRILGEERVVVFDMPGTTRDSVYIPMERDEREYILIDTAGVRKRK 255 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K I + I+ A++V LV+D+ + LL + L++ +NK D Sbjct: 256 KISEAVEKFSIVKTLQAIEEANVVLLVIDAREGITDQDLSLLGFVLNSGRSLVVAVNKWD 315 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + + E+ +L FI+ + +SA G G ++ Y+ +T Sbjct: 316 GLSTDVKDDIKREMDRRLGFIDFARIHFISALHGSGVGNLFESVQEAYMSAT 367 >gi|94266686|ref|ZP_01290361.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] gi|93452674|gb|EAT03231.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] Length = 500 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 2/125 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 VA++G N GKS+L+N + + +IVT TTR + + + +DT GI Sbjct: 232 GAAVAILGRPNVGKSSLLNALLREERAIVTPVPGTTRDTIEESIEVNGVPVRLIDTAGIR 291 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + +S ++ I S + AD+V L+VD+ L L + +A ++ L+L++NK+D Sbjct: 292 DTPESVEEIGIERSRRHGREADLVLLLVDATSGLVPEDLTLYQSLAGQN--LVLVVNKLD 349 Query: 142 CVKPE 146 P+ Sbjct: 350 LPGPD 354 >gi|298252771|ref|ZP_06976565.1| GTPase [Gardnerella vaginalis 5-1] gi|297533135|gb|EFH72019.1| GTPase [Gardnerella vaginalis 5-1] Length = 734 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 4/177 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D +D+ G +A++G N GKSTLVNR +G +V++V TR V + Sbjct: 288 QDDAKDSKAVGVIAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNF 347 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DT G + + + + ++ +D V +VD L ++ + Sbjct: 348 KLVDTGGWEADVEGIDSSIAQQAQVAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKP 407 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + L +NK+D + E L AE + + + + +SA G G D+L+ ++L A Sbjct: 408 ITLAVNKVDDARSEYLT--AEFWK--LGMGEPYGISAMHGRGVGDLLDAALNSLKKA 460 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N + S+V TTR V +V +F+DT GI K Sbjct: 475 VALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWLFIDTAGI---K 531 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ DS + + ++ + ++L+ N Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALILFDSSQPIAEQDLKVMSQAVDAGRAIVLVFN 591 Query: 139 KIDCV 143 K D + Sbjct: 592 KWDLM 596 >gi|197105188|ref|YP_002130565.1| GTP-binding protein HflX [Phenylobacterium zucineum HLK1] gi|196478608|gb|ACG78136.1| GTP-binding protein HflX [Phenylobacterium zucineum HLK1] Length = 424 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 14/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A+V T +R + + DT G + Sbjct: 193 TVALVGYTNAGKSTLFNRLTQAEVLAQDMLFATLDPTLRMLKLPDGRPAILSDTVGFIS- 251 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKR------SSRLI 134 D H+L+ R + ++ AD+V V D + E + D ++ + +R R++ Sbjct: 252 -DLPHELVEAFRATLEEVREADVVLHVRDIASEETEAQAQD-VRTVLQRLGVDMDERRIL 309 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + NK+D + + + A A + +VSA G GCDD+L + + + AP V Sbjct: 310 EVWNKVDLLPADERQDAAGDARR--AHPPAILVSAVTGEGCDDLLRAVGALVDEAPPV 365 >gi|149194988|ref|ZP_01872081.1| GTP-binding protein EngA [Caminibacter mediatlanticus TB-2] gi|149134909|gb|EDM23392.1| GTP-binding protein EngA [Caminibacter mediatlanticus TB-2] Length = 460 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIFN 82 VA++G N GKS+ NR + + +IV+ K TTR I + +VS + +I+ +DT G+ Sbjct: 4 VAILGKPNVGKSSFFNRIIRERDAIVSEKAGTTRDIKKRVVSLDDDLEEIILIDTGGLEE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + ++K+ + ++ K AD++ +VD +++ K + LIL++NK+D Sbjct: 64 RDELFNKVKEK-AFEVAKEADLILYMVDGRTIPDEEEIKYFRKLQKLNKPLILVVNKVDN 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI-SDL 201 ++L+E L ++ F +S G ++ + +P + A I D+ Sbjct: 123 ---DKLMEGVYDFYSL-GADEVFPISIAHNRGVGKLIERIKEFVPKKQKIIEATSIEEDI 178 Query: 202 PM 203 P+ Sbjct: 179 PL 180 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 11/154 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKS+L+N VG++ +IV+ TT + + I F+DT GI Sbjct: 200 VAIVGRVNVGKSSLLNALVGSERAIVSDIDGTTIDPIDETIYFNGYHITFVDTAGIRRRS 259 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 KD ++R + ++ AD+ LV+D+ EL I L I K + I++ N Sbjct: 260 KIKDIEKYALMR-TEKVLEEADVAILVLDAQNGIVELDEKIGGL---IQKHKNACIIVAN 315 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT-FMVSATK 171 K D K + ++E+ ++ ++ FMV + K Sbjct: 316 KWDEAKMDYKKFESEVRDRFKYLYYAPFMVVSAK 349 >gi|327191435|gb|EGE58458.1| GTP-binding protein [Rhizobium etli CNPAF512] Length = 441 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 33/197 (16%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK-------EIAKRSSRLIL 135 ++ R + + AD++ V D S + + D+++ + A+ RLI Sbjct: 264 LPTHLVAAFRATLEEVLEADLILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAGKRLIE 323 Query: 136 ILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC--------- 183 + NKID ++PE ++++A A+ +V VSA G G D +++ + Sbjct: 324 VWNKIDRLEPEVHDAMVQKAAGASNVV------AVSAVSGEGVDTLMDEISRRLSGVMTE 377 Query: 184 -------STLPLAPWVY 193 L L PW+Y Sbjct: 378 TTIRLPVDKLALLPWLY 394 >gi|319936463|ref|ZP_08010879.1| GTP-binding protein engA [Coprobacillus sp. 29_1] gi|319808578|gb|EFW05130.1| GTP-binding protein engA [Coprobacillus sp. 29_1] Length = 435 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 6/166 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VG N GKST+ NR VG +VSIV TR + S +DT GI Sbjct: 4 GVVAIVGRANVGKSTIFNRIVGERVSIVEDIPGVTRDRIYANASWLTRDFRLIDTGGIEL 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI-D 141 S+ + + + I+ AD++ VV+ + + + + K ++L +NKI D Sbjct: 64 EDASFTEQIKMQAEIAIEEADVILFVVNGREGITREDAFVARMLQKSKKPIVLAVNKIDD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V + + + + + VS + G G D+L+ + +P Sbjct: 124 QVYKDNIYDFYNLG-----VGDPIAVSGSHGIGIGDILDQIIHLMP 164 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +++G N GKS+L N +G + IV+ TTR + + + +DT G+ Sbjct: 178 SIIGRPNVGKSSLTNALLGEERVIVSDIEGTTRDAIDTAFEKDGQKYRVIDTAGMRKKGK 237 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K I + S ++ +D+V +V+D R + + + +IL++NK D Sbjct: 238 VYENIEKYSILRALSAVEKSDVVLVVIDGERGVVEQDKHVAGNAHEAGRGVILVVNKWDL 297 Query: 143 VKPE 146 V+ + Sbjct: 298 VQKD 301 >gi|295106000|emb|CBL03543.1| ribosome-associated GTPase EngA [Gordonibacter pamelaeae 7-10-1-b] Length = 438 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 9/160 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G NAGKS+L N+ SIV+ TTR + V + +DT G+ Sbjct: 181 VAIIGRPNAGKSSLTNKMTKGDRSIVSDVAGTTRDAIDTAVEHDGTLYTIVDTAGLRRKS 240 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D + +R + I AD+ LV+DS L + A+R ++++LNK Sbjct: 241 QIDQDVEYYGFVR-AMRAIDRADVALLVIDSTLGLTDQDQRVAGYAAERGCAMVIVLNKW 299 Query: 141 DCVK-PERLLEQAE-IANKLVFI--EKTFMVSATKGHGCD 176 D V+ PE + E IA+++ F+ +SA G D Sbjct: 300 DLVEGPEAKADIRERIADRMTFVGYAPVVAISALTGKKVD 339 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 5/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST VNR A +IV TR + +DT GI Sbjct: 6 VAVVGRPNVGKSTFVNRIAQADEAIVHEMRGVTRDRSYHEADWNGVEFKLVDTGGIEMGD 65 Query: 85 DSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + IR + + AD+V +VD + + + + + K + L++NK+D Sbjct: 66 DDAFQGSIRAQAIAGANEADVVIFIVDGKTGINADDEAVARILRKAGKPVFLVVNKMDT- 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 P R E E + + + VS+T GHG D+L+ + L Sbjct: 125 -PNRTDELWEFYQ--LGVGDPWPVSSTHGHGTGDLLDAVVEEL 164 >gi|291000700|ref|XP_002682917.1| small GTPase [Naegleria gruberi] gi|284096545|gb|EFC50173.1| small GTPase [Naegleria gruberi] Length = 644 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 13/140 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKESQ-IVFLDTPGIFN 82 +A++G +N GKSTL+N +G + + + TTR + ++EK Q + DT GI Sbjct: 371 LAIIGRSNVGKSTLLNHLIGEERTRTSSTPGTTRDTIEVEAINEKTGQHYLICDTAGIRK 430 Query: 83 AK----DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH-------DLLKEIAKRSS 131 K D ++ ++ ++ TIK+A++ CLVVD + + D+ + + K Sbjct: 431 KKHTDTDRIEQMSLKDTYRTIKYANVCCLVVDPTHNISGEGYGLTQQDLDIARMVEKEGR 490 Query: 132 RLILILNKIDCVKPERLLEQ 151 L++ NK D VK ++ Q Sbjct: 491 SLVIACNKWDMVKNPYVVAQ 510 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 27/139 (19%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI--------------VRGIVSEKES 70 VA++G N GKSTL N +G + SIV + TR V +V +K++ Sbjct: 39 VAIIGRENVGKSTLFNSLLGRQHSIVHNSPGVTRDCQEAKTQIKLKYPMNVSEVVFDKKA 98 Query: 71 Q--------IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + F+DTPG ++ + +I+ + +I +++ LV D L+ + + Sbjct: 99 RKRLIKKISCTFIDTPGA-----NFMESIIQQTQDSIASSNVALLVTDCRDGLQKWDYHV 153 Query: 123 LKEIAKRSSRLILILNKID 141 + + + ILNK D Sbjct: 154 ANYLEMKGIPALHILNKCD 172 >gi|266620968|ref|ZP_06113903.1| tRNA modification GTPase TrmE [Clostridium hathewayi DSM 13479] gi|288867390|gb|EFC99688.1| tRNA modification GTPase TrmE [Clostridium hathewayi DSM 13479] Length = 459 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG + +IVT TTR + + ++ + +DT GI + D Sbjct: 227 ILGKPNAGKSSLLNVLVGEERAIVTDVAGTTRDTLEETIRLEDITLNVIDTAGIRDTDDI 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + AD++ VVD L N ++LK I R + +++LNK D Sbjct: 287 VEKIGVEKARNAADAADLIIYVVDGSCPLDENDEEILKFIKDR--KAVVLLNKSD 339 >gi|302522295|ref|ZP_07274637.1| GTP-binding protein HflX [Streptomyces sp. SPB78] gi|318059589|ref|ZP_07978312.1| ATP/GTP-binding protein [Streptomyces sp. SA3_actG] gi|318075953|ref|ZP_07983285.1| ATP/GTP-binding protein [Streptomyces sp. SA3_actF] gi|302431190|gb|EFL03006.1| GTP-binding protein HflX [Streptomyces sp. SPB78] Length = 520 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 15/191 (7%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI +D + R VA+ G TNAGKS+L+NR GA V + T V Sbjct: 277 EIAEMKTGRDLKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 336 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 337 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPAPEEQLA 396 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++E+ I+++NK D P + +L+ +EK + VSA G G + Sbjct: 397 AVREVIREVGATDVPEIVVINKADAADP-------VVLQRLLRVEKHSIAVSARSGQGIE 449 Query: 177 DVLNYLCSTLP 187 ++L + LP Sbjct: 450 ELLALIDEELP 460 >gi|122702635|emb|CAL88507.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT GI A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGI--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|261410105|ref|YP_003246346.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10] gi|261286568|gb|ACX68539.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10] Length = 458 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N +IVT TTR ++ V+ + LDT G Sbjct: 218 REGITTAIVGRPNVGKSSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + AD++ LV+++ L + +L+++I R + I+I+NK Sbjct: 278 IRETMDVVEQIGVERSKHAVNEADLILLVLNASEPLHQDELELMEQI--RGRQCIVIMNK 335 Query: 140 IDC 142 +D Sbjct: 336 MDL 338 >gi|221133872|ref|ZP_03560177.1| GTP-binding protein EngA [Glaciecola sp. HTCC2999] Length = 481 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G ++ Q + +DT GI Sbjct: 4 VLALVGRPNVGKSTLFNRLTNTRDALVADFPGLTRDRKYGQAKVEDRQFIVIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S I AD+V +VD+ L + + + K+ + ++ NK+D + Sbjct: 64 EAGIDAAMAEQSLLAIDEADVVLFLVDARAGLTAADQGIAEYLRKQEKTVYVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + E A+ + + ++A G G +L+ S PLA Sbjct: 124 DGDS--ESADFY--ALGMGNVQQIAAAHGRGVAQLLDLTLS--PLA 163 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V + TTR + + E + + +DT G+ + Sbjct: 197 LAVVGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSIFIPMERDEREYILIDTAGVRKRR 256 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K I + I+ A++V LV+D+ + LL I L+L +NK D Sbjct: 257 KINEAVEKFSIVKTLQAIEEANVVLLVIDAREGISDQDLSLLGFILNAGRSLVLAVNKWD 316 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGC 175 ++ E + E+ +L F++ + +SA G G Sbjct: 317 GLQAHVKDEIKRELDRRLGFVDFARLHFISALHGTGV 353 >gi|77748780|ref|NP_644664.2| tRNA modification GTPase TrmE [Xanthomonas axonopodis pv. citri str. 306] Length = 446 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 14/170 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + +R + + ++ AD+ +V+D+ R+L+ D + + R + I NK D + Sbjct: 281 IEREGMRRARAELERADLALVVLDA-RDLQA-ARDAIGDAIDTVPRQLWIHNKCDLLGNA 338 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 L+ IA VSA G G + L+ L L V S D Sbjct: 339 ASLDANAIA-----------VSAVTGQGLEQ-LHIRLRALALGDGVDSVD 376 >gi|331002253|ref|ZP_08325772.1| GTP-binding protein engA [Lachnospiraceae oral taxon 107 str. F0167] gi|330411347|gb|EGG90763.1| GTP-binding protein engA [Lachnospiraceae oral taxon 107 str. F0167] Length = 443 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKS+++NR G IV+ TTR + +V + + VF+DT G+ Sbjct: 181 IAIVGKPNVGKSSIINRLTGQNRVIVSDIAGTTRDAIDTVVVNNKQEYVFIDTAGLRRKS 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V LV+D++ + + R +I+ +NK D Sbjct: 241 KVKEDIERYSIIRTVTAVERADVVILVIDANEGVTEQDAKIAGIAHDRGKGIIVAVNKWD 300 Query: 142 CVKPE 146 V+ + Sbjct: 301 LVEKD 305 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA++G N GKSTL N G +SIV TR + + + +DT GI + Sbjct: 5 VVAIIGRPNVGKSTLFNAIAGEPISIVKDTPGVTRDRIYADCTWLDMNFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D M + I+ AD++ + D + L + + + K ++L +NK+D Sbjct: 65 SSDIILSQMREQAEIAIETADVIVFITDVRQGLVDSDSKVCDMLRKSRKPVVLAVNKVDS 124 Query: 143 V 143 + Sbjct: 125 I 125 >gi|323493772|ref|ZP_08098890.1| tRNA modification GTPase TrmE [Vibrio brasiliensis LMG 20546] gi|323311906|gb|EGA65052.1| tRNA modification GTPase TrmE [Vibrio brasiliensis LMG 20546] Length = 453 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + D+ + R + + +I NK D Sbjct: 278 DEVEKIGIERAWEEISQADRVLFMVDGTTTDATDPKDIWPDFVDRLPENIGMTVIRNKAD 337 >gi|326423790|ref|NP_759969.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6] gi|319999155|gb|AAO09496.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6] Length = 462 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 14/163 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ +A Sbjct: 227 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI---LILNKID 141 D K+ I +W I+ AD V +VD + ++ + R I +I NK D Sbjct: 287 DEVEKIGIERAWDEIRQADRVLFMVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKAD 346 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYL 182 Q + + + + + ++ SA G G D + N+L Sbjct: 347 ---------QTQESLGICHVSQPTLIRLSAKTGQGVDALRNHL 380 >gi|317182147|dbj|BAJ59931.1| GTP-binding protein EngA [Helicobacter pylori F57] Length = 461 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR A+++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARARIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +SA+ G +++ + + L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISASHNRGISALIDAILNALNL 169 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILVGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|229817644|ref|ZP_04447926.1| hypothetical protein BIFANG_02914 [Bifidobacterium angulatum DSM 20098] gi|229785433|gb|EEP21547.1| hypothetical protein BIFANG_02914 [Bifidobacterium angulatum DSM 20098] Length = 709 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 7/191 (3%) Query: 2 EMGEITFFNEHKDFVQDNSRS---GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR 58 E E N ++D DN + G +A+VG N GKS+LVNR +G +V++V TR Sbjct: 249 EGDEALISNTNRDDSSDNGKGKSVGVLAIVGRPNVGKSSLVNRILGHRVAVVEDTPGVTR 308 Query: 59 SIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN 118 V + +DT G + + + + AD V LVVD L Sbjct: 309 DRVSYDAEWAGTDFKLVDTGGWEVDVEGIDSAIASQAEVAVNLADAVVLVVDGQVGLTNT 368 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 ++K + + L +NKID + E L AE + + + + VSA G G ++ Sbjct: 369 EERIVKMLRASGKPVTLAVNKIDDRESEYL--AAEFWK--LGLGEPYAVSAMHGRGVGEL 424 Query: 179 LNYLCSTLPLA 189 L+ +L A Sbjct: 425 LDAAIDSLKKA 435 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IVS +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLANEERTVVNDLAGTTRDPVDEIVSMDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + ++ ++L+ N Sbjct: 507 RRQHKLKGAEYYSSLRTQAAIERCELALVLFDASVPISDQDLKVMSSAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDAM 571 >gi|167754612|ref|ZP_02426739.1| hypothetical protein CLORAM_00114 [Clostridium ramosum DSM 1402] gi|237733753|ref|ZP_04564234.1| GTP-binding protein engA [Mollicutes bacterium D7] gi|167705444|gb|EDS20023.1| hypothetical protein CLORAM_00114 [Clostridium ramosum DSM 1402] gi|229383091|gb|EEO33182.1| GTP-binding protein engA [Coprobacillus sp. D7] Length = 434 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 8/167 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G VA+VG N GKST+ NR VG ++SIV TR + + + +DT GI Sbjct: 2 AGVVAIVGRANVGKSTIFNRIVGERISIVEDVAGVTRDRIYATATWLTKEFRLIDTGGI- 60 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D+ I++ I+ AD++ VV+ + + + + K S ++L +NKI Sbjct: 61 ELQDASFTAQIKMQAEIAIEEADLIVFVVNGREGITREDEYVARLLQKTSKPVLLAVNKI 120 Query: 141 -DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D + + E + I VS + G G D+L+ + L Sbjct: 121 DDNAFKDDIYEFYNLG-----IGDPIAVSGSHGIGIGDLLDEIIKNL 162 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +++G N GKS+L N +G + IV++ TTR + + + +DT G+ Sbjct: 177 SIIGRPNVGKSSLTNAILGEERVIVSNIEGTTRDAIDTAFVKDGQKYRVIDTAGMRKKGK 236 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K I + S+I+ +D++ +V+D ++ + + + +IL++NK D Sbjct: 237 VYENIEKYSILRALSSIEKSDVIVVVIDGNQGVIEQDKHVAGYAHEAGKGVILVVNKWDL 296 Query: 143 V-KPERLLEQAE 153 V K E+ +++ E Sbjct: 297 VEKDEKTMQKKE 308 >gi|86608739|ref|YP_477501.1| GTP-binding protein EngA [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502588|sp|Q2JM09|DER_SYNJB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86557281|gb|ABD02238.1| GTP-binding protein EngA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 459 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V++VG N GKS+L+NR VG++ +IV+ TTR + +V+ + +DT GI Sbjct: 180 AVSIVGRPNVGKSSLLNRLVGSERAIVSPISGTTRDAIDTVVTWEGQPYRLIDTAGIRKK 239 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + I ++ I+ +D V LV+D+ + L I + ++++NK Sbjct: 240 NRVQYGIEFFSINRAFKAIQRSDAVLLVIDALEGVTEQDQRLAGRIEEEGRACVVVVNKW 299 Query: 141 DCV--KPERLLEQ--AEIANKLVFIE--KTFMVSATKGH 173 D V K + + EI ++L FIE VSA G Sbjct: 300 DAVENKDTHTINEFTREIRDRLYFIEWAPLLFVSALTGQ 338 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 10/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTLVNR G + +IV + TR + V ++ +DT G+ Sbjct: 6 VAIVGRPNVGKSTLVNRMAGVRSAIVHDEPGVTRDRLYQEVEWNGRRLRVVDTGGLVFGD 65 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 DS IR + + + A V VVD L V + D L+ K+ +++ +NK Sbjct: 66 DSEFLPHIRQQAMAAMAEAQAVIFVVDGREGLTPADVEVADWLR---KQPLPVVVAVNK- 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C + L QA +L + S G+G ++L + + LP Sbjct: 122 -CESGQMGLAQAAAFWEL-GLGDPIPCSGIHGNGVAELLEAVLAHLP 166 >gi|292806438|gb|ADE42349.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSTLNL 168 >gi|302877170|ref|YP_003845803.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B] gi|307687869|ref|ZP_07630315.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B] gi|302580027|gb|ADL54039.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B] Length = 459 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N +IVT TTR ++ ++ I +DT G Sbjct: 221 REGLSTVIVGKPNVGKSSLLNLLTNENRAIVTDVAGTTRDVIEEYINMDGVPIKVIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILI 136 I D K+ + S I+ AD++ L++DS REL + I D +K+ + I++ Sbjct: 281 IRETDDLVEKIGVEKSKEKIEEADLIILMLDSSRELDEEDLKIADYIKD-----KKYIVL 335 Query: 137 LNKID 141 NK D Sbjct: 336 FNKSD 340 >gi|122700673|emb|CAL87925.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKATQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLNLNP 170 >gi|99905867|gb|ABF68628.1| YphC [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID +R E+A A + K+F +S + G +++ + + L L P Sbjct: 122 NKIDN---DREKERA-YAFSSFGMPKSFNISVSHNRGISALIDAMLNALNLKP 170 >gi|154494318|ref|ZP_02033638.1| hypothetical protein PARMER_03672 [Parabacteroides merdae ATCC 43184] gi|154085762|gb|EDN84807.1| hypothetical protein PARMER_03672 [Parabacteroides merdae ATCC 43184] Length = 437 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR + +IV + TTR G + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRQAIVNEEAGTTRDRQYGKAEWTGKEFSLIDTGGWVINS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILILNK 139 D + + + + ++ AD++ VVD + DL E+A +R+ + +I++ NK Sbjct: 65 DDVFEEEINKQVKVALEEADVILFVVDVLN----GVTDLDNEVAAILRRAKKPVIVVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + L + + F +SA G D+L+ + +TLP Sbjct: 121 ADNFE----LHPSSAEFYSFGLGDPFCISAINGSCTGDLLDKIVATLP 164 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A++G NAGKS+L+N F+G IVT TTR + ++ +DT GI Sbjct: 178 IAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKKG 237 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N Y+ ++ S I+++D+ L++D+ R ++ ++ + K L++ +NK Sbjct: 238 KVNEDLEYYSVI--RSIRAIENSDVCVLMLDATRGIESQDLNIFSLVQKNKKGLVVCVNK 295 Query: 140 IDCVK 144 D V+ Sbjct: 296 WDLVE 300 >gi|154505327|ref|ZP_02042065.1| hypothetical protein RUMGNA_02842 [Ruminococcus gnavus ATCC 29149] gi|153794370|gb|EDN76790.1| hypothetical protein RUMGNA_02842 [Ruminococcus gnavus ATCC 29149] Length = 450 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 9/176 (5%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 ++ F E +++ R +A+VG N GKS++VN+ +G IV+ TTR + + Sbjct: 170 VSHFPEGAGETEEDERP-KIAIVGKPNVGKSSIVNKLLGENRVIVSDIAGTTRDAIDTAI 228 Query: 66 SEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 ++ + +F+DT G+ K+ + I + + ++ AD+V +V+D+ + + Sbjct: 229 KHEDREYIFIDTAGLRRKNKIKEELERFSIIRTVTAVERADVVLMVIDATEGVTEQDAKI 288 Query: 123 LKEIAKRSSRLILILNKIDCV-KPERLLEQAE--IANKLVFI--EKTFMVSATKGH 173 +R +I+++NK D + K ++ ++Q E I L ++ + VSA G Sbjct: 289 AGIAHERGKGVIIVVNKWDAIEKNDKTMKQYENDIRTTLAYMPYAEIMYVSAKTGQ 344 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 6/174 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V +N VA+VG N GKSTL N G ++SIV TR + VS + + + Sbjct: 5 VVENMSKPVVAIVGRPNVGKSTLFNTLAGERISIVKDTPGVTRDRIYADVSWLDKEFTMI 64 Query: 76 DTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-L 133 DT GI ++ D M + I AD++ + D + L V+ + ++ +RS + + Sbjct: 65 DTGGIEPDSSDIILSQMREQAQIAIDTADVIVFITDVRQGL-VDADSKVADMLRRSKKPV 123 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +L++NK+D + + + E N + I +SA G D+L+ + S P Sbjct: 124 VLVVNKVDNFD-KFMPDVYEFYN--LGIGDPVPISAASRLGIGDMLDEVVSHFP 174 >gi|90421001|ref|ZP_01228905.1| putative tRNA modification GTPase [Aurantimonas manganoxydans SI85-9A1] gi|90334779|gb|EAS48555.1| putative tRNA modification GTPase [Aurantimonas manganoxydans SI85-9A1] Length = 473 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 46/88 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VGA NAGKS+L+N +V+IVT TTR ++ + + F DT GI Sbjct: 220 VAIVGAPNAGKSSLLNALADREVAIVTEIPGTTRDVIEATLDLGGIPVRFSDTAGIRETA 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH 112 D + I + + AD+V +VD H Sbjct: 280 DRIEAMGIERARGVMDEADLVLALVDPH 307 >gi|27262166|gb|AAN87364.1| GTP-binding protein [Heliobacillus mobilis] Length = 445 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR G +V+IV + TR + + +DT G+ F Sbjct: 8 IVAVVGRPNVGKSTLFNRLTGGRVAIVEDRPGVTRDRLYRNAKWLNREFTLVDTGGLEFG 67 Query: 83 AK-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI- 140 A + + +++ + + + I AD++ +VD + + + + + + L++NKI Sbjct: 68 ADGNPFSEVIYKQAEAAIAEADVILFMVDGKAGITADDETVAAVLRRTKKPVFLVVNKIE 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + ++ E + + +SAT G D+L+ + LP Sbjct: 128 DFSQRDKYYEFFALG-----LGDPIPISATHGMNTGDLLDAVIEALP 169 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 8/171 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D+ + +A++G N GKS++VN +G + IV++ TTR + + V +D Sbjct: 175 EDDPDTIKIAVIGKPNVGKSSMVNAILGEERVIVSNIPGTTRDAIDTPFEREGKHYVLID 234 Query: 77 TPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ +S + + S + +D+V +V+D+ + + + + Sbjct: 235 TAGMRRKGKIDESVERYSVMRSLRAVDRSDVVLMVIDASQGVTEQDKKIAGYAHEAGKAC 294 Query: 134 ILILNKIDCV-KPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVL 179 +L+LNK D V K ++ + + + + ++L F+ T VSA G +L Sbjct: 295 VLVLNKWDLVPKDDKTMNRFDKVVRSELGFLNYAPTIYVSALTGQRLPKIL 345 >gi|25009497|sp|Q8PEH9|MNME_XANAC RecName: Full=tRNA modification GTPase mnmE gi|21110816|gb|AAM39200.1| thiophene and furan oxidation protein [Xanthomonas axonopodis pv. citri str. 306] Length = 448 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 14/170 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 223 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + +R + + ++ AD+ +V+D+ R+L+ D + + R + I NK D Sbjct: 283 IEREGMRRARAELERADLALVVLDA-RDLQA-ARDAIGDAIDTVPRQLWIHNKCDL---- 336 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + N VSA G G + L+ L L V S D Sbjct: 337 -------LGNAASLDANAIAVSAVTGQGLEQ-LHIRLRALALGDGVDSVD 378 >gi|304398073|ref|ZP_07379948.1| tRNA modification GTPase TrmE [Pantoea sp. aB] gi|304354359|gb|EFM18731.1| tRNA modification GTPase TrmE [Pantoea sp. aB] Length = 454 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 305 >gi|260221780|emb|CBA30686.1| tRNA modification GTPase mnmE [Curvibacter putative symbiont of Hydra magnipapillata] Length = 469 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 7/133 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 235 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQETIQIEGVPLHIIDTAGLRASD 294 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-------IHDLLKEIAKRSSRLILIL 137 D+ K+ I +W I+ AD V + D R + I + E S +I + Sbjct: 295 DAVEKIGIERAWQAIEAADAVLFLHDLTRSSAIEYIAADADIAGAIAEKLPASIPVIHVW 354 Query: 138 NKIDCVKPERLLE 150 NK D PE LE Sbjct: 355 NKSDAATPETGLE 367 >gi|300776911|ref|ZP_07086769.1| tRNA modification GTPase TrmE [Chryseobacterium gleum ATCC 35910] gi|300502421|gb|EFK33561.1| tRNA modification GTPase TrmE [Chryseobacterium gleum ATCC 35910] Length = 461 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 1/162 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G NAGKSTL+N + + +IV++ TTR + ++ K +DT G+ Sbjct: 219 AVAIIGKPNAGKSTLLNSLLKEERAIVSNIAGTTRDTIEEVLHIKGHAFRLIDTAGLRET 278 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + ++ + +++A+I+ + D+ E ++++ + + +LI+ KID V Sbjct: 279 VDEIEAIGVKKAKEKVENANILVYLADAATEDFSEDIEMIQSLVREDLKLIICATKIDEV 338 Query: 144 KPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCS 184 P + +I + E F+ +SA + D+ N L S Sbjct: 339 MPAKYETVEDIFRNAISHEFDFIKISAVENQNIQDLKNELSS 380 >gi|197294798|ref|YP_001799339.1| GTP-binding protein EngA [Candidatus Phytoplasma australiense] gi|171854125|emb|CAM12114.1| GTP-binding protein [Candidatus Phytoplasma australiense] Length = 439 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 4/156 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L NR +G + +I HK TR + + +DT GI Sbjct: 4 IAIVGRPNVGKSSLFNRLIGKRQAITHHKEGITRDRIYAQANWLTRTFDVIDTGGIEFQA 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + + I AD++ VVD L + H L K + + +++L++NKID Sbjct: 64 IPFLEQIKQQAQLAIDEADVIIFVVDGKTGLTQSDHYLAKILYQTKKKVLLVVNKIDN-- 121 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 LL L F + VSA G G D+L+ Sbjct: 122 -HDLLSNIYEFYALGF-DAPLPVSALHGVGVGDLLD 155 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 DN C+ +G N GKSTL N + ++ +V+ TT + + + +DT Sbjct: 176 DNVIKFCI--IGRPNVGKSTLTNSLLFSQRMVVSDIAGTTTDAIDTFFINEGQKYQIIDT 233 Query: 78 PG------IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 G I+ +D Y L + T+ + DI CLV+D+ + ++ I + Sbjct: 234 AGIKKRGKIYEQEDKYSVLR---ALQTLANCDIACLVIDAQAGILEQDKNIAGLILEHHK 290 Query: 132 RLILILNKIDCVKPE 146 I+I+NK D + E Sbjct: 291 SYIIIVNKWDLISKE 305 >gi|153956503|ref|YP_001397268.1| tRNA modification GTPase TrmE [Clostridium kluyveri DSM 555] gi|189036197|sp|A5N451|MNME_CLOK5 RecName: Full=tRNA modification GTPase mnmE gi|146349361|gb|EDK35897.1| TrmE [Clostridium kluyveri DSM 555] Length = 459 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 8/161 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V +VG N GKS+L+N + +IVT TTR ++ ++ I +DT G Sbjct: 221 REGLSVVIVGKPNVGKSSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L++DS +EL +++ + R + I++LNK Sbjct: 281 IRKTDDIVEKIGVEKSKEKIDESDLVILMLDSSKELDEEDKEIINYVNHR--KYIILLNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D L + + ++ FI KT S G G D + N Sbjct: 339 TDIGDKIDLNDICNLNSR--FIIKT---SIKNGEGLDKIKN 374 >gi|328950011|ref|YP_004367346.1| GTP-binding protein engA [Marinithermus hydrothermalis DSM 14884] gi|328450335|gb|AEB11236.1| GTP-binding protein engA [Marinithermus hydrothermalis DSM 14884] Length = 431 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 13/164 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKS+L+N +G + IV+ + TTR + + V +DT GI Sbjct: 177 LAIIGRPNAGKSSLMNAILGEERVIVSEQPGTTRDAIDVEFDYGGQRFVLVDTAGIRKRP 236 Query: 85 D-SYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + I+ S I+ AD+V LVVD RELK + E + IL ++K Sbjct: 237 ETAVEYFAIQRSHRVIREADVVVLVVDPFELGDRELK-----MANEALEAGRPTILAVSK 291 Query: 140 IDCV-KPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLN 180 D V K E +AEI KL +E+ ++ SA G +L+ Sbjct: 292 WDRVPKDEARRVRAEIREKLAHLERLPLIYTSAVTGQNLHKLLS 335 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 1/125 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L NR +G + ++V + TR + ++ + +DT G+++ Sbjct: 4 VVIVGRPNVGKSSLYNRLLGRRDAVVADEPGVTRDLKEAVIETDRGRFKLVDTGGLWSGD 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 K+ ++ I+ AD+V +VD + ++ + ++ + ++L+ K+D K Sbjct: 64 AWEPKIQEKVD-RAIQDADLVLFLVDGRADPTQADFEVADYLRRQPTPVLLVATKVDDPK 122 Query: 145 PERLL 149 E+ L Sbjct: 123 HEQYL 127 >gi|311694388|gb|ADP97261.1| GTP-binding protein EngA [marine bacterium HP15] Length = 452 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 8/175 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 + +VG N GKSTLVNR +G +V TTR V + SQ +DT G+ Sbjct: 158 IGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYERQGSQYTLIDTAGVRRRK 217 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N + K I + I A +V LV+D+ L L+ + L++ +NK D Sbjct: 218 NVSEVVEKFSIIKTLQAIDDAHVVILVIDAREGLVDQDLHLIGFVLDAGRSLVIAVNKWD 277 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYL--CSTLPLAPW 191 + PE R + ++ +L F++ +SA G G + + C +A W Sbjct: 278 GMDPEDRARVKEQVQRRLDFLDYADKHYISALHGSGVGVMYESVQACYESAMAKW 332 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 12/133 (9%) Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR G S + + + +DT G+ + M R S ++ ADIV +VD L Sbjct: 16 TRDRKYGEGSYEGQRFIVIDTGGLTGDEQGLDLEMARQSMQAVEEADIVLFLVDGRAGLT 75 Query: 117 VNIHDLLKEIAKRSSRLI-LILNKIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKG 172 +L+ + +RS + L++NK D P +IA + E TF+++A+ Sbjct: 76 AG-DELIADSLRRSGKQAHLVVNKTDGQDP-------DIAASDFYSLGFESTFLIAASHN 127 Query: 173 HGCDDVLNYLCST 185 G +L L + Sbjct: 128 RGIRSMLEILLPS 140 >gi|225459366|ref|XP_002285809.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|302141924|emb|CBI19127.3| unnamed protein product [Vitis vinifera] Length = 571 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N + ++ +IVT TTR +V VS + LDT GI Sbjct: 328 IAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETD 387 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLL---KEIAKRSSRLILILN 138 D K+ + S + AD++ + + D + + + K+ + S+ +IL++N Sbjct: 388 DIVEKIGVERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTPVILVVN 447 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 KIDC P E N K A G G D+ Sbjct: 448 KIDCA-PSACTELFMEGNSF---SKHIFTCAVTGQGISDL 483 >gi|159479670|ref|XP_001697913.1| hypothetical protein CHLREDRAFT_120661 [Chlamydomonas reinhardtii] gi|158274011|gb|EDO99796.1| predicted protein [Chlamydomonas reinhardtii] Length = 446 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 12/174 (6%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLD 76 D R VA+VG N GKS+L+N G + SIV TTR V V+ ++ +D Sbjct: 172 DPDRPLAVAIVGRPNVGKSSLLNAIAGEERSIVCDMSGTTRDAVDTKVTLPTGKKLTLID 231 Query: 77 TPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 T GI ++ D ++ + + ++ AD+ LV+D+ + L + A Sbjct: 232 TAGIRKRSRVADSPDGAEQISVDRAMRAVRRADVAVLVIDAVEGITQQDFRLSELFAAEG 291 Query: 131 SRLILILNKIDCVKP-----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +++++NK D V P E++ E + V SA G +DVL Sbjct: 292 KAVVVVVNKWDRVDPRLWTVEKMAENVRTQLRHVAWASVVCTSAIYGRHVEDVL 345 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 14/185 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIFN 82 VA+VG N GKS L NR GA V++V + TR R +KE V +DT G+ + Sbjct: 1 VAIVGRPNVGKSALFNRIAGASVAVVFDQPGVTRDRLYTRAFWGDKE--FVMIDTGGLMS 58 Query: 83 AKDSYHKLMI-RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR--SSRLILILNK 139 I R + + + AD V L+VD L+ ++L + S L+L +NK Sbjct: 59 DATRLPPDAIERQAAAGVAEADTVILLVDGQAGLQPGDEEILSWLRSNHPSKSLLLAVNK 118 Query: 140 IDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + V K ++++ AE + + + VSA G G ++L+ L LP P D Sbjct: 119 CENVAKADQMV--AEFWSTGL---EPHAVSAISGTGTGEMLDVLAKMLP-PPTGAEQDDD 172 Query: 199 SDLPM 203 D P+ Sbjct: 173 PDRPL 177 >gi|149375007|ref|ZP_01892780.1| predicted GTPase [Marinobacter algicola DG893] gi|149360896|gb|EDM49347.1| predicted GTPase [Marinobacter algicola DG893] Length = 453 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 8/175 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 + +VG N GKSTLVNR +G IV TTR V ++Q +DT G+ Sbjct: 158 IGIVGRPNVGKSTLVNRMLGEDRVIVYDMPGTTRDSVYIPFERMDNQYTLIDTAGVRRRK 217 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N + K I + I A +V LV+D+ L L+ + L++ +NK D Sbjct: 218 NVSEVVEKFSIIKTLQAIDDAHVVILVIDAREGLVDQDLHLIGFVLDAGRSLVVAVNKWD 277 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN--YLCSTLPLAPW 191 + PE R + ++ +L F++ +SA G G + + + C +A W Sbjct: 278 GMDPEDRAKVKEQVQRRLDFLDYADKHYISALHGSGVGVMYDSVHACYESAMAKW 332 >gi|297243478|ref|ZP_06927410.1| GTPase [Gardnerella vaginalis AMD] gi|296888523|gb|EFH27263.1| GTPase [Gardnerella vaginalis AMD] Length = 734 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 4/177 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D +D+ G +A++G N GKSTLVNR +G +V++V TR V + Sbjct: 288 QDDAKDSKAVGVIAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNF 347 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DT G + + + + ++ +D V +VD L ++ + Sbjct: 348 KLVDTGGWEADVEGIDSSIAQQAQVAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKP 407 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + L +NK+D + E L AE + + + + +SA G G D+L+ ++L A Sbjct: 408 ITLAVNKVDDARSEYLT--AEFWK--LGMGEPYGISAMHGRGVGDLLDAALNSLKKA 460 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N + S+V TTR V +V +F+DT GI K Sbjct: 475 VALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWLFIDTAGI---K 531 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ DS + + ++ + ++L+ N Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALILFDSSQPIAEQDLKVMSQAVDAGRAIVLVFN 591 Query: 139 KIDCV 143 K D + Sbjct: 592 KWDLM 596 >gi|190171256|gb|ACE63698.1| ThdF [Pantoea sp. E147] Length = 439 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G +IVT TTR ++R + Sbjct: 193 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVLREHIH 252 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 253 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 297 >gi|122701509|emb|CAL88144.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + V TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHKVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|317177334|dbj|BAJ55123.1| GTP-binding protein EngA [Helicobacter pylori F16] Length = 461 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + E+A A + K+F +S + G +++ + STL L Sbjct: 128 DKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAILSTLNL 169 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|296157619|ref|ZP_06840454.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1] gi|295892391|gb|EFG72174.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1] Length = 464 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V +R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ + +D K+ I +W+ I+ AD+V ++D+ + Sbjct: 261 TRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTWNEIERADVVLHLLDARTGMT 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKID 141 V + IA R ++ +LNK D Sbjct: 321 VED----EAIAGRFPAGVPVVRVLNKTD 344 >gi|292806572|gb|ADE42416.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILSALDL 168 >gi|302880137|ref|YP_003848701.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2] gi|302582926|gb|ADL56937.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2] Length = 442 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +ALVG N GKS+L+NR G +V++V+ TTR ++R + + + +DT G Sbjct: 214 REGAHIALVGRPNVGKSSLLNRLAGEEVALVSDVPGTTRDVIRQAIQIRGVPLHIMDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + + D + + + T+ AD++ +++D+ Sbjct: 274 LRESGDEVENMGMARTHQTVGRADLILMLLDA 305 >gi|254282403|ref|ZP_04957371.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR51-B] gi|219678606|gb|EED34955.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR51-B] Length = 450 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G V L G NAGKS+L+NR G V+IVT TTR ++R + + DT G Sbjct: 217 RAGAQVVLAGKPNAGKSSLMNRLAGDAVAIVTDVPGTTRDLLRQPIELGGVALHLTDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 + +++D+ + ++ + S I+ AD++ V+D Sbjct: 277 LRDSEDTVEQEGVKRARSAIEMADVILHVID 307 >gi|223933730|ref|ZP_03625704.1| small GTP-binding protein [Streptococcus suis 89/1591] gi|302024351|ref|ZP_07249562.1| GTP-binding protein EngA [Streptococcus suis 05HAS68] gi|330833346|ref|YP_004402171.1| GTP-binding protein EngA [Streptococcus suis ST3] gi|223897611|gb|EEF63998.1| small GTP-binding protein [Streptococcus suis 89/1591] gi|329307569|gb|AEB81985.1| GTP-binding protein EngA [Streptococcus suis ST3] Length = 436 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL++NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVV-SGKEGVTDADEYVSRILYKTNKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + VS+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIIENLPV 165 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I+ +D++ +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIERSDVILMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|315646409|ref|ZP_07899527.1| GTP-binding protein EngA [Paenibacillus vortex V453] gi|315278052|gb|EFU41372.1| GTP-binding protein EngA [Paenibacillus vortex V453] Length = 440 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR +G +++IV K TR + G +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRLIGDRLAIVEDKPGITRDRIYGSAEWNGKAFSVIDTGGIEID 64 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D IR+ I+ AD++ + D+ + + ++ + + + +IL +NK+D Sbjct: 65 GDDMILKSIRMQAELAIEEADVIVFMCDAKAGVTQSDEEVAQILFRSGKPVILSVNKVDN 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +K R+ + E + L F + +S + G G D+L+ + LP Sbjct: 125 LK--RVDDIYEFYS-LGFGDPV-GISGSHGTGIGDLLDVVVENLP 165 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL+G N GKS+LVN +G + IV+ TTR + + + V +DT G+ Sbjct: 179 VALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAIDTPFEKDGQRYVLIDTAGMRKRG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I+ AD+V ++++ E +I E K S + ++N Sbjct: 239 KVYETTEKYSVMRAMRAIERADVVLVLINGEEGIIEQDKHIAGYAYEAGKAS---LFVVN 295 Query: 139 KIDCV-KPERLLEQAE 153 K D V K ++ ++Q E Sbjct: 296 KWDMVEKEDKTMQQFE 311 >gi|260902393|ref|ZP_05910788.1| putative tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ4037] gi|308107141|gb|EFO44681.1| putative tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ4037] Length = 319 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 10/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 84 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 143 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + ++ + R S + +I NK D Sbjct: 144 DEVEKIGIERAWDEIAQADRVLFMVDGTTTDATDPKEIWPDFVDRLPESIGMTVIRNKAD 203 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + + N I +SA G G D + N+L Sbjct: 204 QTGEDMGICH---VNDPTLIR----LSAKTGAGVDALRNHL 237 >gi|317050193|ref|YP_004117841.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b] gi|316951810|gb|ADU71285.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b] Length = 454 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAN 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDG 305 >gi|251782601|ref|YP_002996904.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391231|dbj|BAH81690.1| tRNA(5-carboxymethylaminomethyl-2-thiouridylate)synthase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 458 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLN-LSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|255033904|ref|YP_003084525.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053] gi|254946660|gb|ACT91360.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053] Length = 455 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G+ N GKSTL+N + + +IVT TTR ++ + + F+DT GI Sbjct: 226 VAIIGSPNVGKSTLLNALLNEEKAIVTSIAGTTRDVIEDTIVLDGLKFRFIDTAGIRETT 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + I S + + ADIV + DS L N L + ++ +LNK D Sbjct: 286 DVVESIGIERSKAAMDKADIVIFLFDSAETLADN--RALAALLPAGKEVLFVLNKTD 340 >gi|15612410|ref|NP_224063.1| tRNA modification GTPase TrmE [Helicobacter pylori J99] gi|14195308|sp|Q9ZJG6|MNME_HELPJ RecName: Full=tRNA modification GTPase mnmE gi|4155957|gb|AAD06922.1| putative thiophene/furan oxidation protein [Helicobacter pylori J99] Length = 461 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 204 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 263 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 264 EEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 323 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 324 LMDTLNRTKKPCIVVLNKND 343 >gi|270264114|ref|ZP_06192381.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13] gi|270041763|gb|EFA14860.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13] Length = 455 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G +IVT TTR ++R + Sbjct: 202 DNVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVLREHIH 261 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W+ I+ AD V +VD Sbjct: 262 IDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFMVDG 306 >gi|122702645|emb|CAL88512.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--V 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVDS L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDSKSIPSDEDLKLFREVFKTNPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 K ER + + K+F +S + G +++ + S L L P Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|122700605|emb|CAL87891.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDL 168 >gi|222055249|ref|YP_002537611.1| small GTP-binding protein [Geobacter sp. FRC-32] gi|254783155|sp|B9M914|DER_GEOSF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221564538|gb|ACM20510.1| small GTP-binding protein [Geobacter sp. FRC-32] Length = 441 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 13/175 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A+VG N GKSTL NR VG + ++V TR V+ + + +DT G Sbjct: 4 LIAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYADVNRFDVPFILIDTGGFEPE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNK 139 D + M S + AD++ V+D L V + ++L+ + K + ++NK Sbjct: 64 TSDRLLQQMREQSQLAMDEADLILFVMDGRDGLTPADVEVVEMLRRVNK---PVFYVVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP--LAPWV 192 ID + E A + IE+ F +SA G +D++ + + LP AP V Sbjct: 121 IDGDRQ----ENAAGDFYSLGIEQIFTISAEHNRGVNDLMEEVIAALPNKTAPAV 171 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 10/145 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + + TTR + + + + + +DT GI Sbjct: 178 IAVIGRPNVGKSTLVNRLLGVERVVANPTPGTTRDSIDTYFNCNKKRYLLIDTAGIRRKG 237 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+ + S +I+ AD+V +V+D+ + + + I ++NK D Sbjct: 238 KTTEKIEKYSVVDSLRSIERADVVLIVIDAEEGVTEQDTKIAGYAFEAGRGCIFVVNKWD 297 Query: 142 CVKPERLLEQAEIANKLVFIEKTFM 166 + + A+ +F+EK M Sbjct: 298 AISKDN-------ASMGIFVEKIRM 315 >gi|19746040|ref|NP_607176.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS8232] gi|94990416|ref|YP_598516.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10270] gi|209559376|ref|YP_002285848.1| tRNA modification GTPase TrmE [Streptococcus pyogenes NZ131] gi|25009494|sp|Q8P161|MNME_STRP8 RecName: Full=tRNA modification GTPase mnmE gi|166234824|sp|Q1JH22|MNME_STRPD RecName: Full=tRNA modification GTPase mnmE gi|19748208|gb|AAL97675.1| putative thiophene degradation protein F [Streptococcus pyogenes MGAS8232] gi|94543924|gb|ABF33972.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS10270] gi|209540577|gb|ACI61153.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus pyogenes NZ131] gi|323127423|gb|ADX24720.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 458 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLN-LSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|312128799|ref|YP_003993673.1| tRNA modification gtpase trme [Caldicellulosiruptor hydrothermalis 108] gi|311778818|gb|ADQ08304.1| tRNA modification GTPase TrmE [Caldicellulosiruptor hydrothermalis 108] Length = 455 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG +VG N GKS+L+NR + + +IVT TTR ++ ++ + I+ DT G Sbjct: 218 KSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +D K+ ++ + +I+ AD+V +++S L+ ++ ++ + I + R I+++NK Sbjct: 278 VRKTEDIVEKIGVKKTLESIERADLVLFMIESSGILQEDL-EIFETI--KDKRFIVLVNK 334 Query: 140 ID 141 ID Sbjct: 335 ID 336 >gi|241761000|ref|ZP_04759089.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374619|gb|EER64080.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 454 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL+NR +G I + TR + S + + +DT G+ Sbjct: 192 LAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGLRKKA 251 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D +L + ++ TI +A++V L++D + L+ + + + LI+ +NK D Sbjct: 252 RVVDKMERLSVMDTFRTIDYAEVVVLLLDGTQGLEGQDLRIADRVLEEGRSLIIAINKWD 311 Query: 142 CVK-PERLLE--QAEIANKLVFIEKTFM--VSATKGHGCDDVLNYLCST 185 V+ P L+ + + + L ++ + +SA G G D +L T Sbjct: 312 MVENPSAFLQAIREGLNDGLAQVKGVPLITISALTGRGVDPLLKAAFET 360 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKSTL NR VG ++++V + TR G +DT G + Sbjct: 3 SVAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDE 62 Query: 84 KDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + +R+ + + +K D+ V+D+ + I L +EIA+ Sbjct: 63 DPASLPGRMRVQTEAAVKECDVALFVIDARQ----GITPLDEEIAR 104 >gi|222640528|gb|EEE68660.1| hypothetical protein OsJ_27256 [Oryza sativa Japonica Group] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 6/125 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N + ++ +IVT TTR +V VS I LDT GI Sbjct: 171 VAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETD 230 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE--IAKRSSR----LILILN 138 D K+ + S + AD++ + + + + L++ I+K+SS ++L++N Sbjct: 231 DIVEKIGVERSEAAALGADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAPVPMVLVIN 290 Query: 139 KIDCV 143 K+DC Sbjct: 291 KVDCA 295 >gi|219856806|ref|YP_002473928.1| hypothetical protein CKR_3463 [Clostridium kluyveri NBRC 12016] gi|219570530|dbj|BAH08514.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 465 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 8/161 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V +VG N GKS+L+N + +IVT TTR ++ ++ I +DT G Sbjct: 227 REGLSVVIVGKPNVGKSSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAG 286 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S I +D+V L++DS +EL +++ + R + I++LNK Sbjct: 287 IRKTDDIVEKIGVEKSKEKIDESDLVILMLDSSKELDEEDKEIINYVNHR--KYIILLNK 344 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D L + + ++ FI KT S G G D + N Sbjct: 345 TDIGDKIDLNDICNLNSR--FIIKT---SIKNGEGLDKIKN 380 >gi|254439207|ref|ZP_05052701.1| GTPase, putative [Octadecabacter antarcticus 307] gi|198254653|gb|EDY78967.1| GTPase, putative [Octadecabacter antarcticus 307] Length = 496 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 7/161 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V + TR + G + + +DT G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEEA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKID 141 D S M L+ ++ AD VCL + R + ++ +I K+S+++IL NK + Sbjct: 64 TDESLQGRMRALTERAVEMAD-VCLFMYDARMGIMPADEVFADILRKKSAKVILAANKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + I + + + +SA G G ++ + L Sbjct: 123 G----RAADAGVIEGFNLGLGEPIRLSAEHGEGLSEMYDVL 159 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 16/166 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIV---FLDTPGI 80 +A+VG NAGKSTL+N+ +G + + TR + + ES V DT GI Sbjct: 201 IAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISVQMDWGPESATVPVRIFDTAGI 260 Query: 81 ---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LIL 135 ++ KL + +K A++V +++D E+ DL L ++A+R R ++L Sbjct: 261 RKRAKVQEKLEKLSVADGLRAVKFAEVVVILIDV--EIPFEQQDLRLADLAEREGRAVVL 318 Query: 136 ILNK--IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD 176 +NK ++ K +L E E +L+ K VSA G G D Sbjct: 319 AVNKWDVEGEKQAKLKELKEQFTRLLPQLKGAPLVTVSAKTGRGID 364 >gi|139473816|ref|YP_001128532.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str. Manfredo] gi|166234826|sp|A2REM7|MNME_STRPG RecName: Full=tRNA modification GTPase mnmE gi|134272063|emb|CAM30302.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str. Manfredo] Length = 458 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLN-LSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|160880522|ref|YP_001559490.1| small GTP-binding protein [Clostridium phytofermentans ISDg] gi|189037143|sp|A9KLK7|DER_CLOPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|160429188|gb|ABX42751.1| small GTP-binding protein [Clostridium phytofermentans ISDg] Length = 441 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G ++SIV TR + ++ + Q +DT GI Sbjct: 5 IVAVVGRPNVGKSTLFNALAGDRISIVKDTPGVTRDRIYADITWLDKQFTLVDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD M + I AD++ VVD + L ++ + + ++ +RS + +IL++NK+D Sbjct: 65 SKDMMLTYMREQAEIAIATADVIMFVVDVRQGL-LDADNKVADMLRRSGKPVILVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + I VSA G D+L+ + P Sbjct: 124 NFD-KFMPDVYEFYN--LGIGDPVPVSAASMLGFGDLLDLVVGHFP 166 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+++N+ +G IV+ TTR + V+ + VF+DT G+ Sbjct: 180 IAIVGKPNVGKSSIINKLLGENRVIVSDVAGTTRDAIDTAVTWNKKDYVFIDTAGLRRKS 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + S ++ AD+V +V+D++ + + +R +I+ +NK D Sbjct: 240 KIKEELERFSIIRTVSAVERADVVVVVIDANEGVTEQDAKIAGIAHERGKGIIIAVNKWD 299 Query: 142 CVKPE 146 ++ + Sbjct: 300 AIEKD 304 >gi|329925110|ref|ZP_08280054.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5] gi|328940229|gb|EGG36561.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5] Length = 458 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N +IVT TTR ++ V+ + LDT G Sbjct: 218 REGITTAIVGRPNVGKSSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + AD++ LV+++ L + +L+++I R + I+I+NK Sbjct: 278 IRETMDVVEQIGVERSKHAVNEADLILLVLNASEPLHQDELELMEQI--RGRQCIVIMNK 335 Query: 140 IDC 142 +D Sbjct: 336 MDL 338 >gi|319938676|ref|ZP_08013040.1| GTP-binding protein engA [Streptococcus anginosus 1_2_62CV] gi|319811726|gb|EFW07992.1| GTP-binding protein engA [Streptococcus anginosus 1_2_62CV] Length = 436 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE ++EI + + + VS+ G G DVL+ + LP Sbjct: 123 NPEM---RSEIFDFYALGLGDPYPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|293393716|ref|ZP_06638024.1| tRNA modification GTPase [Serratia odorifera DSM 4582] gi|291423760|gb|EFE96981.1| tRNA modification GTPase [Serratia odorifera DSM 4582] Length = 454 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 201 DSVRVEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W+ I+ AD V +VD Sbjct: 261 IDGMPLHIIDTAGLREAGDEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|260575069|ref|ZP_05843070.1| GTP-binding proten HflX [Rhodobacter sp. SW2] gi|259022691|gb|EEW25986.1| GTP-binding proten HflX [Rhodobacter sp. SW2] Length = 412 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 14/168 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +RG+V +I+ DT G + Sbjct: 193 LVALVGYTNAGKSTLFNRMTGAEVLAKDMLFATLDPTMRGLVLPSGRKIIISDTVGFISD 252 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA----KRSSRLILILN 138 + R + + AD++ V D SH E D+ K +A K ++ I I N Sbjct: 253 LPTQLVAAFRATLEEVLEADLILHVRDISHPESAEQAADVAKILAALGVKAATPQIEIWN 312 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 K+D V+ + L++QA+ + ++ + SA G G ++L + Sbjct: 313 KLDLVQGAMRDGLVQQAQGRDGVMAL------SALTGEGLPELLEAIS 354 >gi|256372122|ref|YP_003109946.1| small GTP-binding protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008706|gb|ACU54273.1| small GTP-binding protein [Acidimicrobium ferrooxidans DSM 10331] Length = 429 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 14/161 (8%) Query: 29 GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-----FNA 83 G N GKS+L NR VG +IV + TT + +V E +I F+DT G+ + + Sbjct: 183 GRPNVGKSSLFNRLVGEPRAIVYDQPGTTVDTLDTVVETDEGRIRFVDTAGLRRRSRYES 242 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK---I 140 Y M+R + + I AD+ LV+D+ + L++ I S ++++LNK + Sbjct: 243 GTEYFS-MVR-TLAAIDAADVSLLVIDATEGVTGWDQRLVERIDAAGSPVVVVLNKWDQL 300 Query: 141 DCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 D +R+ + ++ ++L F+ +SA G G VL Sbjct: 301 DAEAKDRI--ERDVEDRLAFVTGLDPVRISALTGRGVHRVL 339 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L NR VG + ++V + + TR + + + + +DT G Sbjct: 4 VVIVGRPNVGKSSLFNRVVGRREAVVEERPKVTRDAKEATIDWEGAPLAIVDTGGYLAGA 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + + ++ AD+ +VVD+ + + + + IL+ NK+D Sbjct: 64 DGLDAAVSAAVEAALRRADLALVVVDARVPPTEEDAAIARVVRRAKVPSILVANKVDSPG 123 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 E + + + + + + VSA G G ++L+ + L L Sbjct: 124 HEPAIWE----HLALGVGEPVPVSAMHGRGVFELLDLVARRLDL 163 >gi|157150518|ref|YP_001449828.1| GTP-binding protein EngA [Streptococcus gordonii str. Challis substr. CH1] gi|189037167|sp|A8AVL8|DER_STRGC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157075312|gb|ABV09995.1| GTP-binding protein engA [Streptococcus gordonii str. Challis substr. CH1] Length = 436 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|122701369|emb|CAL88074.1| GTPase [Helicobacter pylori] gi|122701407|emb|CAL88093.1| GTPase [Helicobacter pylori] gi|122701441|emb|CAL88110.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLDL 168 >gi|94992362|ref|YP_600461.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS2096] gi|94545870|gb|ABF35917.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS2096] Length = 261 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 25 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 84 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 85 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLN-LSQDSNRIIL-LNK 142 Query: 140 IDC 142 D Sbjct: 143 TDL 145 >gi|94501121|ref|ZP_01307644.1| predicted GTPase [Oceanobacter sp. RED65] gi|94426697|gb|EAT11682.1| predicted GTPase [Oceanobacter sp. RED65] Length = 482 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G E + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADLAGLTRDRKFGAGKVGERDYIVVDTGGISGM 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S+ + ADIV +VD+ L + + + + +++NKID + Sbjct: 64 EQGLDAKMAEQSFQAMDEADIVLFLVDARAGLTSADKMIAQHLRATEKKTYVVVNKIDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +E + + + ++AT G + +++++ + LP Sbjct: 124 NPD--VATSEFYE--LGLGELQTIAATHNRGINVLMDHVLNELP 163 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +++VG N GKSTLVNR +G +V TT + E +DT G+ Sbjct: 184 ISVVGRPNVGKSTLVNRMLGEDRVVVYDHPGTTMDSIEIPYERNEKPYTLIDTAGVRRRK 243 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N K++ K I + I+ A++ +V+D+ + +L + L++ LNK D Sbjct: 244 NIKEAAEKFSIVKALQAIQDANVCIVVIDAREGIVEQDLTMLSFVLNSGKGLVIALNKWD 303 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFM--VSATKGHGC 175 + E + + E+ +L F++ M +SA G G Sbjct: 304 GMDIEQKDFVKKELERRLSFVDWADMHFISAKHGTGV 340 >gi|76155787|gb|AAX27064.2| SJCHGC02949 protein [Schistosoma japonicum] Length = 188 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 13/126 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 +A++G N+GKS+LVN KV V+ K TTRS + Q+ F+D PG+ + + Sbjct: 66 IAVIGCPNSGKSSLVNMLTKWKVCAVSGKAHTTRSKQTAAFFQDNVQLAFVDLPGLVSKS 125 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAK-----RSSRLI 134 K S KL IR S I +D++ +V+D SH+E +H+ EI K I Sbjct: 126 KASRFKLEKTFIRDPHSAIFDSDLILVVIDVSHKESCEVLHE---EIVKALHFFSDKESI 182 Query: 135 LILNKI 140 L+LNKI Sbjct: 183 LVLNKI 188 >gi|37572951|dbj|BAC98601.1| putative tRNA modification GTPase trmE [Oryza sativa Japonica Group] Length = 552 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 6/125 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N + ++ +IVT TTR +V VS I LDT GI Sbjct: 308 VAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETD 367 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE--IAKRSSR----LILILN 138 D K+ + S + AD++ + + + + L++ I+K+SS ++L++N Sbjct: 368 DIVEKIGVERSEAAALGADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAPVPMVLVIN 427 Query: 139 KIDCV 143 K+DC Sbjct: 428 KVDCA 432 >gi|329962635|ref|ZP_08300583.1| ribosome biogenesis GTPase Der [Bacteroides fluxus YIT 12057] gi|328529666|gb|EGF56564.1| ribosome biogenesis GTPase Der [Bacteroides fluxus YIT 12057] Length = 437 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN--- 82 A+VG NAGKS++VN F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++D + +IR S +I+++D+ L++D+ R ++ ++ I K S L++++NK D Sbjct: 239 VSEDLEYYSVIR-SIRSIENSDVCILMLDATRGIESQDLNIFSLIQKNSKGLVVVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 LVQ 300 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR ++ +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKSRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILIL 137 N+ D + + + + + AD++ VVD +L + + +L+ K ++LI Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVAAILRRAKK---PVLLIA 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D L A KL + + +SA G G D+++ + + Sbjct: 119 NKTDN---NELQYNAPEFYKL-GLGDPYCISAVTGSGTGDMMDLIVGSF 163 >gi|317494662|ref|ZP_07953074.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917264|gb|EFV38611.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium 9_2_54FAA] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 279 DEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|166030494|ref|ZP_02233323.1| hypothetical protein DORFOR_00155 [Dorea formicigenerans ATCC 27755] gi|166029746|gb|EDR48503.1| hypothetical protein DORFOR_00155 [Dorea formicigenerans ATCC 27755] Length = 428 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+++N G ++IV+ K TT +++ + +V +DTPG+ + Sbjct: 14 IGIFGKRNAGKSSVINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVIIDTPGLDDD 73 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D KL I+ ++ + DI LV+D + +L I ++ I++LNK D Sbjct: 74 ADILGKLRIQKAYQMLNKTDIAILVIDGTVGMTEEDKKILTRIQDKNIPYIVVLNKAD 131 >gi|94988539|ref|YP_596640.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS9429] gi|166234823|sp|Q1JLX3|MNME_STRPC RecName: Full=tRNA modification GTPase mnmE gi|94542047|gb|ABF32096.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS9429] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLN-LSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|21910288|ref|NP_664556.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS315] gi|28895865|ref|NP_802215.1| tRNA modification GTPase TrmE [Streptococcus pyogenes SSI-1] gi|25453303|sp|Q8K7L5|MNME_STRP3 RecName: Full=tRNA modification GTPase mnmE gi|21904483|gb|AAM79359.1| putative thiophene degradation protein F [Streptococcus pyogenes MGAS315] gi|28811115|dbj|BAC64048.1| putative thiophene degradation protein F [Streptococcus pyogenes SSI-1] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLN-LSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|329297578|ref|ZP_08254914.1| GTP-binding protein Der [Plautia stali symbiont] Length = 496 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + + + +DT G+ Sbjct: 210 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDDREYILIDTAGVRKRG 269 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 270 KITDTVEKFSVIKTLQAIEDANVVMLVIDARAGISDQDLSLLGFILNSGRSLVIVVNKWD 329 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E + + +L FI+ + +SA G G ++ Y CST Sbjct: 330 GLSQEIKDEVKDTLDFRLGFIDFARVHFISALHGSGVGNLFESVTEAYDCST 381 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ + + + R + NK D + Sbjct: 64 EEGVENRMAEQSLLAIEEADVVLFLVDARAGVMPADQQIANHLRSRDKATFFVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 P + A + + + + ++A+ G G +L L PW+ Sbjct: 124 DP----DAAVLDFYALGLGEIHPIAASHGRGVTSLLE-----TALLPWM 163 >gi|302542060|ref|ZP_07294402.1| GTP-binding protein HflX [Streptomyces hygroscopicus ATCC 53653] gi|302459678|gb|EFL22771.1| GTP-binding protein HflX [Streptomyces himastatinicus ATCC 53653] Length = 500 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + DT G Sbjct: 276 SVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRH 335 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + R + + AD++ VVD SH E + ++++++ I+++NK Sbjct: 336 LPHHLVEAFRSTMEEVGDADLILHVVDGSHPAPEEQLAAVREVIRDVGAVDVPEIVVINK 395 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLP 187 D P + +L+ +E++ M VSA G G D++L + LP Sbjct: 396 ADKADP-------LVLQRLLRMERSAMAVSARSGQGIDELLEVIDHELP 437 >gi|238855502|ref|ZP_04645807.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3] gi|260665206|ref|ZP_05866055.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US] gi|282931528|ref|ZP_06337027.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] gi|238831868|gb|EEQ24200.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3] gi|260560943|gb|EEX26918.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US] gi|281304335|gb|EFA96438.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] Length = 460 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG A+VG N GKS+L+N +IVT TTR + VS K + +DT G Sbjct: 221 RSGLATAIVGRPNVGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIKGVPLKLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I+ AD+V L++++ +L L+ + + I++LNK Sbjct: 281 IHHTEDKVEKIGVERSKKAIEQADLVLLLLNASEDLTPEDEKLID--YTKDKKRIVVLNK 338 Query: 140 IDC 142 D Sbjct: 339 SDL 341 >gi|217967546|ref|YP_002353052.1| small GTP-binding protein [Dictyoglomus turgidum DSM 6724] gi|217336645|gb|ACK42438.1| small GTP-binding protein [Dictyoglomus turgidum DSM 6724] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V++VG N GKS L NR VG + +IV + TR + + + +D+ G + Sbjct: 7 VVSIVGRPNVGKSVLFNRIVGEEKAIVADEPGVTRDPLVHLCEHEGKYFYLVDSAG-WGL 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D +L+ I +D++ VVD EL H+ + + K R+IL++NK++ Sbjct: 66 TDDLSELIQEKIQEVINISDLILFVVDGRSELTALDHEFVDILRKSGKRVILVVNKMEG- 124 Query: 144 KPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 R+ + +A + + + F +SA ++L+ + S +P V S D+ Sbjct: 125 ---RIDREEYLAPFTALGLGEPFPISALHKQNLYELLDLIISLIPAPEEVSSEDK 176 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 3/131 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V +S +A VG N+GKS+L+N +G SIV+ TTR V I + + + Sbjct: 171 VSSEDKSIKLAFVGRPNSGKSSLLNALIGRDRSIVSEIPGTTRDAVDLIWDFNGKKYIIV 230 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DTPG+ ++ +L ++ + TI+ DI +V+D ++ +L I + Sbjct: 231 DTPGLRRPAKVEEGLEELSVQKTLQTIRRIDIAIMVIDLSVGIREQEKRILHYIEDKGKS 290 Query: 133 LILILNKIDCV 143 +++ NK D + Sbjct: 291 CLIVFNKTDLI 301 >gi|28896776|ref|NP_796381.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus RIMD 2210633] gi|153838496|ref|ZP_01991163.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810] gi|260361954|ref|ZP_05774959.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030] gi|260876535|ref|ZP_05888890.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034] gi|260897408|ref|ZP_05905904.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466] gi|31340459|sp|Q87TR6|MNME_VIBPA RecName: Full=tRNA modification GTPase mnmE gi|28804984|dbj|BAC58265.1| thiophene and furan oxidation protein ThdF [Vibrio parahaemolyticus RIMD 2210633] gi|149748119|gb|EDM58978.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810] gi|308087879|gb|EFO37574.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466] gi|308090361|gb|EFO40056.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034] gi|308114188|gb|EFO51728.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030] gi|328471230|gb|EGF42132.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 10329] Length = 453 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 10/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + ++ + R S + +I NK D Sbjct: 278 DEVEKIGIERAWDEIAQADRVLFMVDGTTTDATDPKEIWPDFVDRLPESIGMTVIRNKAD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + + N I +SA G G D + N+L Sbjct: 338 QTGEDMGICH---VNDPTLIR----LSAKTGAGVDALRNHL 371 >gi|15675063|ref|NP_269237.1| tRNA modification GTPase TrmE [Streptococcus pyogenes M1 GAS] gi|71910607|ref|YP_282157.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS5005] gi|21363025|sp|Q99ZU0|MNME_STRP1 RecName: Full=tRNA modification GTPase mnmE gi|13622217|gb|AAK33958.1| putative thiophene degradation protein F [Streptococcus pyogenes M1 GAS] gi|71853389|gb|AAZ51412.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS5005] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLN-LSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|226947216|ref|YP_002802289.1| tRNA modification GTPase TrmE [Azotobacter vinelandii DJ] gi|226722143|gb|ACO81314.1| tRNA modification GTPase TrmE [Azotobacter vinelandii DJ] Length = 455 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + + Sbjct: 219 VVIAGRPNAGKSSLLNALAGRESAIVTDIAGTTRDLLREHIHIDGMPLHIVDTAGLRDTE 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE---IAKRSSRLILILNKID 141 D ++ + + I+ AD V LV+D+ + L E + ++ LI NKID Sbjct: 279 DRVERIGVERALQAIREADRVLLVIDASAPEAADPFALWPEFLDLPPEPGKVTLIRNKID 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + EQ + ++ + SA G G D + +L Sbjct: 339 LTGEPIVHEQGSDGHVVIGL------SARTGEGLDLLRKHL 373 >gi|307638103|gb|ADN80553.1| GTPase and tRNA-U345-formylation enzyme [Helicobacter pylori 908] gi|325996704|gb|ADZ52109.1| tRNA modification GTPase [Helicobacter pylori 2018] gi|325998296|gb|ADZ50504.1| tRNA modification GTPase [Helicobacter pylori 2017] Length = 450 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|242255910|gb|ACS88939.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKVLNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLDL 168 >gi|255656611|ref|ZP_05402020.1| GTP-binding protein EngA [Clostridium difficile QCD-23m63] gi|296449935|ref|ZP_06891699.1| ribosome-associated GTPase EngA [Clostridium difficile NAP08] gi|296878317|ref|ZP_06902325.1| ribosome-associated GTPase EngA [Clostridium difficile NAP07] gi|296261205|gb|EFH08036.1| ribosome-associated GTPase EngA [Clostridium difficile NAP08] gi|296430615|gb|EFH16454.1| ribosome-associated GTPase EngA [Clostridium difficile NAP07] Length = 441 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKST+ N+F G ++SIV + TR + V + +DT GI + Sbjct: 7 VVAVVGRPNVGKSTIFNKFAGKRISIVENTPGVTRDRIFAEVEWLDKYFTLVDTGGIEPD 66 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D M + + + ++ +VD + ++ + + K +IL++NKID Sbjct: 67 SEDIILSQMRNQAMLAMDMSHVILFIVDGKAGITAADKEIAQLLRKTKKPVILVVNKIDS 126 Query: 143 VKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLP 187 Q++ N F E F VS G D+L+ + P Sbjct: 127 --------QSQFDNIYDFYELGFGTPFAVSGANSMGFGDLLDEIVENFP 167 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKS+++N+ +G + IV+ TTR + + + + +DT G+ Sbjct: 181 VAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDTYFEKNGQKFLLIDTAGLRRKS 240 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDS 111 Y K + + S + AD+V +V+D+ Sbjct: 241 KIYETIEKYSVIRAMSAVDRADVVLIVIDA 270 >gi|225018722|ref|ZP_03707914.1| hypothetical protein CLOSTMETH_02672 [Clostridium methylpentosum DSM 5476] gi|224948450|gb|EEG29659.1| hypothetical protein CLOSTMETH_02672 [Clostridium methylpentosum DSM 5476] Length = 440 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ +G ++SIV TR + + +DT GI + Sbjct: 6 VAVVGRPNVGKSTLFNKLIGRRMSIVDDTPGVTRDRIYSECEWCSRPFLLVDTGGIEPES 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R + I+ A ++ LV D + D+ + K ++L +NK D V Sbjct: 66 NDIILSQMRRQAELAIQSAQVIILVTDLRDGVTATDQDVAAMLIKSGKPVVLCVNKCDSV 125 Query: 144 --KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P + E + + + VSA GHG D+L+ + +P Sbjct: 126 GAPPIGIYEFYNLG-----LGEPIAVSAAHGHGTGDLLDAVFEHMP 166 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N+ G + IV+ TTR V +V+ E Q V +DT GI Sbjct: 180 VAIVGKPNVGKSSLINKIAGEERVIVSDIAGTTRDAVDTVVTRGEDQFVLIDTAGIRRKS 239 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + + + + AD+ +++D+ + ++ I+ +NK D Sbjct: 240 KVLDTIERYSVLRAHMAVDRADVCVIIIDATVGFTEQDSKIAGYAHEQGKGCIIAINKWD 299 Query: 142 CVK 144 V+ Sbjct: 300 AVE 302 >gi|218708090|ref|YP_002415711.1| tRNA modification GTPase TrmE [Vibrio splendidus LGP32] gi|218321109|emb|CAV17059.1| tRNA modification GTPase trmE [Vibrio splendidus LGP32] Length = 467 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 232 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 291 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + D+ + R + + +I NK D Sbjct: 292 DEVEKIGIERAWEEIAQADRVLFMVDGTTTDATDPKDIWPDFVDRLPDNIGMTVIRNKAD 351 Query: 142 CVKPE 146 E Sbjct: 352 QTSEE 356 >gi|226490853|ref|NP_001149416.1| LOC100283042 [Zea mays] gi|195627080|gb|ACG35370.1| tRNA modification GTPase trmE [Zea mays] Length = 546 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 6/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N + ++ +IVT TTR +V VS + LDT GI Sbjct: 302 IAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETD 361 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSR----LILILN 138 D K+ ++ S + AD++ + + + + L++ ++ ++SS ++L++N Sbjct: 362 DVVEKIGVKRSEAAAMGADLIVMAISAVDGWTDDDTKLMEHVSVNRKSSGSAVPMVLVIN 421 Query: 139 KIDC 142 K+DC Sbjct: 422 KVDC 425 >gi|195978293|ref|YP_002123537.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974998|gb|ACG62524.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTEQDKALLA-LSQDSNRIIL-LNK 339 Query: 140 ID---CVKPERLLEQA 152 D ++ ++L E+A Sbjct: 340 TDLDQVIEKDQLPEEA 355 >gi|153809896|ref|ZP_01962564.1| hypothetical protein RUMOBE_00277 [Ruminococcus obeum ATCC 29174] gi|149834074|gb|EDM89154.1| hypothetical protein RUMOBE_00277 [Ruminococcus obeum ATCC 29174] Length = 418 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 21/194 (10%) Query: 4 GEITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 E+ +H++ ++ G A+VG TNAGKSTL+N GA + T Sbjct: 179 AELAQVEKHRELIRGKRSRGNLKTAAIVGYTNAGKSTLLNTLTGAGILAEDKLFATLDPT 238 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI---KHADIVCLVVDS---HRE 114 R + + QI+ DT G F K +H ++ ST+ K+AD + VVD+ E Sbjct: 239 TRVLELKDGQQILLTDTVG-FIRKLPHH--LVEAFKSTLEEAKYADYIIHVVDASNPQAE 295 Query: 115 LKVN-IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 L+++ +++ L+E+ ++I +LNK D V+ E L + + T SA G Sbjct: 296 LQMHTVYETLRELGATGKKIITLLNKQDQVQGESLRD--------FRADYTVKCSARTGE 347 Query: 174 GCDDVLNYLCSTLP 187 G +++ + L L Sbjct: 348 GLEELKDVLAKLLA 361 >gi|126700246|ref|YP_001089143.1| GTP-binding protein EngA [Clostridium difficile 630] gi|254976225|ref|ZP_05272697.1| GTP-binding protein EngA [Clostridium difficile QCD-66c26] gi|255093612|ref|ZP_05323090.1| GTP-binding protein EngA [Clostridium difficile CIP 107932] gi|255101800|ref|ZP_05330777.1| GTP-binding protein EngA [Clostridium difficile QCD-63q42] gi|255307668|ref|ZP_05351839.1| GTP-binding protein EngA [Clostridium difficile ATCC 43255] gi|255315360|ref|ZP_05356943.1| GTP-binding protein EngA [Clostridium difficile QCD-76w55] gi|255518025|ref|ZP_05385701.1| GTP-binding protein EngA [Clostridium difficile QCD-97b34] gi|255651141|ref|ZP_05398043.1| GTP-binding protein EngA [Clostridium difficile QCD-37x79] gi|260684207|ref|YP_003215492.1| GTP-binding protein EngA [Clostridium difficile CD196] gi|260687866|ref|YP_003219000.1| GTP-binding protein EngA [Clostridium difficile R20291] gi|306520992|ref|ZP_07407339.1| GTP-binding protein EngA [Clostridium difficile QCD-32g58] gi|115251683|emb|CAJ69518.1| putative GTP-binding protein EngA [Clostridium difficile] gi|260210370|emb|CBA64741.1| putative GTP-binding protein [Clostridium difficile CD196] gi|260213883|emb|CBE05907.1| putative GTP-binding protein [Clostridium difficile R20291] Length = 441 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKST+ N+F G ++SIV + TR + V + +DT GI + Sbjct: 7 VVAVVGRPNVGKSTIFNKFAGKRISIVENTPGVTRDRIFAEVEWLDKYFTLVDTGGIEPD 66 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D M + + + ++ +VD + ++ + + K +IL++NKID Sbjct: 67 SEDIILSQMRNQAMLAMDMSHVILFIVDGKAGITAADKEIAQLLRKTKKPVILVVNKIDS 126 Query: 143 VKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLP 187 Q++ N F E F VS G D+L+ + P Sbjct: 127 --------QSQFDNIYDFYELGFGTPFAVSGANSMGFGDLLDEIVENFP 167 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKS+++N+ +G + IV+ TTR + + + + +DT G+ Sbjct: 181 VAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDTYFEKNGQKFLLIDTAGLRRKS 240 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDS 111 Y K + + S + AD+V +V+D+ Sbjct: 241 KIYETIEKYSVIRAMSAVDRADVVLIVIDA 270 >gi|37678186|ref|NP_932795.1| tRNA modification GTPase TrmE [Vibrio vulnificus YJ016] gi|37196925|dbj|BAC92766.1| thiophene and furan oxidation protein ThdF [Vibrio vulnificus YJ016] Length = 462 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ +A Sbjct: 227 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ I +W I+ AD V +VD Sbjct: 287 DEVEKIGIERAWDEIRQADRVLFMVDG 313 >gi|157374575|ref|YP_001473175.1| GTP-binding protein EngA [Shewanella sediminis HAW-EB3] gi|189037163|sp|A8FT74|DER_SHESH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157316949|gb|ABV36047.1| small GTP-binding protein [Shewanella sediminis HAW-EB3] Length = 488 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + +R ++ NK+D + Sbjct: 64 EEGIETHMAEQSLAAIEEADVVLFLTDARAGLTAADQAICEHLRRREKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + AE + + + + ++A +G G +++ Y LAP+ Sbjct: 124 DADSAC--AEFW--ALGLGEVYQMAAAQGRGVTNMIEY-----ALAPYA 163 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 202 MAIIGKPNVGKSTLTNRILGEERVVVYDSPGTTRDSIYIPMERDGREYVMIDTAGVRRRS 261 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ ++V L++D+ + LL L++ +NK D Sbjct: 262 KVHETVEKFSVIKTLKAVEDCNVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNKWD 321 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + ++E+ +L FI+ + +SA G G Sbjct: 322 GIDQDIKDRVKSELDRRLGFIDFARIHFISALHGTGV 358 >gi|99905881|gb|ABF68635.1| YphC [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + I K+F +S + G +++ + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALDLNP 170 >gi|83590169|ref|YP_430178.1| small GTP-binding protein domain-containing protein [Moorella thermoacetica ATCC 39073] gi|123524458|sp|Q2RIV4|DER_MOOTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|83573083|gb|ABC19635.1| Small GTP-binding protein domain [Moorella thermoacetica ATCC 39073] Length = 438 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 7/177 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKSTL NR G +V+IV TR + Q +DT GI Sbjct: 5 IVAIIGRPNVGKSTLFNRITGGRVAIVEDTPGVTRDRLYRDAEWCGRQFTLVDTGGIATH 64 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI-D 141 +D +R + +K AD++ +VDS + + ++ + + +IL+ NK+ D Sbjct: 65 QDDPLVARVRSQAEQALKEADVIIFLVDSRTGITADDEEIAALLRRSDRPVILVANKVED 124 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 P E + + +SA G D+L+ + LP P D + Sbjct: 125 FSDPTVTHEFYRLG-----LGDPVPISAAHGLNTGDLLDRVVELLPAVPAGEEGDAL 176 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+LVNR +G + IV+ TTR V + E + + +DT G+ Sbjct: 178 VAIVGRPNVGKSSLVNRLLGEERVIVSDLPGTTRDAVDTYIRRGEREYILIDTAGMRRKS 237 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + ++ AD+V +++D + + ++ I+++NK D Sbjct: 238 RITVPTERYSVLRALRAVERADVVLVILDGTEGVTEQDKKIAGYGHEKGKATIIVVNKWD 297 Query: 142 CV-KPERLLE--QAEIANKLVFI--EKTFMVSATKGHGCDDVL 179 V K ER ++ + + +L F+ +SA G D VL Sbjct: 298 LVPKDERTMDHYREAVRQELSFMAYAPVLFISALTGQRVDQVL 340 >gi|260753034|ref|YP_003225927.1| GTP-binding protein EngA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552397|gb|ACV75343.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL+NR +G I + TR + S + + +DT G+ Sbjct: 192 LAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGLRKKA 251 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D +L + ++ TI +A++V L++D + L+ + + + LI+ +NK D Sbjct: 252 RVVDKMERLSVMDTFRTIDYAEVVVLLLDGTQGLEGQDLRIADRVLEEGRSLIIAINKWD 311 Query: 142 CVK-PERLLE--QAEIANKLVFIEKTFM--VSATKGHGCDDVLNYLCST 185 V+ P L+ + + + L ++ + +SA G G D +L T Sbjct: 312 MVENPSAFLQAIREGLNDGLAQVKGVPLITISALTGRGVDPLLKAAFET 360 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKSTL NR VG ++++V + TR G +DT G + Sbjct: 3 SVAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDE 62 Query: 84 KDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + +R+ + + +K D+ V+D+ + I L +EIA+ Sbjct: 63 DPASLPGRMRVQTEAAVKECDVALFVIDARQ----GITPLDEEIAR 104 >gi|225870695|ref|YP_002746642.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047] gi|225700099|emb|CAW94188.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTEQDKALLA-LSQDSNRIIL-LNK 339 Query: 140 ID---CVKPERLLEQA 152 D ++ ++L E+A Sbjct: 340 TDLEQVIEKDQLPEEA 355 >gi|254172541|ref|ZP_04879216.1| GTP-binding protein [Thermococcus sp. AM4] gi|214033470|gb|EEB74297.1| GTP-binding protein [Thermococcus sp. AM4] Length = 188 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 34/159 (21%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE------------KESQI 72 VA++GA N GKSTL+N +G +VS V + TT+ I+R + + Sbjct: 4 VAIIGAENVGKSTLMNALLGGRVSEVENLPGTTKGIIRRRFGKLKIPKGMKNPLGGADEF 63 Query: 73 VFLDTPGIFNAK----------DSYHKLMIRLSWSTIKHADIVCLVVDS----HRELKVN 118 V +DT G+F+ + + + +L+ I ADI+ +VD+ HR ++ Sbjct: 64 VLIDTAGLFDPRLELRGKVLSEEKFKELI-----DEIVSADIIIHMVDATVGLHRGME-K 117 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANK 157 +H +LK + +I+++NKID V ER+ E EI K Sbjct: 118 LHHMLK--MRYDKPIIVVINKIDLVPRERVEELREIIKK 154 >gi|149190086|ref|ZP_01868363.1| GTP-binding protein EngA [Vibrio shilonii AK1] gi|148836116|gb|EDL53076.1| GTP-binding protein EngA [Vibrio shilonii AK1] Length = 494 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 4/152 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I AD+V +VD L + + + K L++NK+D + Sbjct: 64 EEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTSADEAIAQHLRKIEKPSFLVINKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 + AE + +E + ++A G G Sbjct: 124 DAD--AASAEFWQ--LGVEDMYHIAAAHGRGV 151 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + + V +DT G+ + Sbjct: 207 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDDREYVLIDTAGVRRRR 266 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL +++ +NK D Sbjct: 267 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNSGRSIVIAVNKWD 326 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 327 GLDTDVKEHVKKELDRRLGFVDFARIHFISALHGTGV 363 >gi|56551349|ref|YP_162188.1| GTP-binding protein EngA [Zymomonas mobilis subsp. mobilis ZM4] gi|56542923|gb|AAV89077.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL+NR +G I + TR + S + + +DT G+ Sbjct: 192 LAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGLRKKA 251 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D +L + ++ TI +A++V L++D + L+ + + + LI+ +NK D Sbjct: 252 RVVDKMERLSVMDTFRTIDYAEVVVLLLDGTQGLEGQDLRIADRVLEEGRSLIIAINKWD 311 Query: 142 CVK-PERLLE--QAEIANKLVFIEKTFM--VSATKGHGCDDVLNYLCST 185 V+ P L+ + + + L ++ + +SA G G D +L T Sbjct: 312 MVENPSAFLQAIREGLNDGLAQVKGVPLITISALTGRGVDPLLKAAFET 360 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKSTL NR VG ++++V + TR G +DT G + Sbjct: 3 SVAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDE 62 Query: 84 KDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + +R+ + + +K D+ V+D+ + I L +EIA+ Sbjct: 63 DPASLPGRMRVQTEAAVKECDVALFVIDARQ----GITPLDEEIAR 104 >gi|306827423|ref|ZP_07460709.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782] gi|304430368|gb|EFM33391.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLN-LSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|283850821|ref|ZP_06368107.1| small GTP-binding protein [Desulfovibrio sp. FW1012B] gi|283573744|gb|EFC21718.1| small GTP-binding protein [Desulfovibrio sp. FW1012B] Length = 444 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL NR +I + TR + V + + +DT G+ F+A Sbjct: 5 VAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELDDRIVTLIDTGGMDFDA 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKIDC 142 + + ++ + + AD+V +VD + + + D + E +R+ + +++ +NK+D Sbjct: 65 PEGLERQIVVQAEIALNMADVVLFLVDG-KAGRTALDDEMAERLRRTDKPVVVAVNKVDG 123 Query: 143 VKPERLLEQAEIANKLV--FIEKTFM---VSATKGHGCDDVLNYLCSTLP 187 AE N L F F +SA GHG +D+ L LP Sbjct: 124 ---------AEKINALTNDFHAWGFAMMPISAAHGHGVNDLAGALAELLP 164 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS+LVN +G IV+ TTR V V + VF+DT G+ Sbjct: 184 LAVLGRPNAGKSSLVNALLGEDRMIVSEVPGTTRDAVDVAVIRNGRRYVFVDTAGVRKRT 243 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + + + + K AD+ +VVD+ + V L+ + K + ++ +NK+D Sbjct: 244 RITDGVERYSVNKALGSAKRADVAVVVVDATGGVGVQDKRLISYLDKERTPFLVAVNKVD 303 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V + +L + +I +L +SA KG G VL Sbjct: 304 LVAQQDMLTLKKDIEEELRMCSHVPVLYLSAAKGKGVAKVL 344 >gi|257417403|ref|ZP_05594397.1| tRNA modification GTPase [Enterococcus faecalis AR01/DG] gi|257159231|gb|EEU89191.1| tRNA modification GTPase [Enterococcus faecalis ARO1/DG] Length = 465 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 13/160 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT G Sbjct: 225 REGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + +D++ LV++ +L LL+ A + + +++LNK Sbjct: 285 IRETEDIVERIGVERSRKALADSDLILLVLNQSEKLTEEDRQLLE--ATKGLKRVILLNK 342 Query: 140 IDC---VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D + P L E LV E+ VS G D Sbjct: 343 MDLPTKLDPNELQE-------LVPAEEILSVSVLSNTGLD 375 >gi|242255904|gb|ACS88936.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGIGALIDAILSTLDL 168 >gi|225868377|ref|YP_002744325.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus] gi|225701653|emb|CAW98957.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 6/136 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTEQDKALLA-LSQDSNRIIL-LNK 339 Query: 140 ID---CVKPERLLEQA 152 D ++ ++L E+A Sbjct: 340 TDLEQVIEKDQLPEEA 355 >gi|189463677|ref|ZP_03012462.1| hypothetical protein BACINT_00008 [Bacteroides intestinalis DSM 17393] gi|189438627|gb|EDV07612.1| hypothetical protein BACINT_00008 [Bacteroides intestinalis DSM 17393] Length = 437 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G + +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ + IR S +I++AD+ L++D+ R ++ ++ I K + L++++NK Sbjct: 239 VNEDLEYYSV-IR-SIRSIENADVCILMLDATRGVESQDLNIFSLIQKNAKGLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVQ 300 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 13/170 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILI 136 N+ D + + + + + AD++ VVD + DL ++A +R+ + ++LI Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMN----GVTDLDMQVAAILRRTQKPVLLI 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D L A KL + + +SA G G D+++ + T Sbjct: 118 ANKTDN---GELQYNAPEFYKL-GLGDPYCISAMTGSGTGDMMDLIVGTF 163 >gi|122702745|emb|CAL88562.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAARMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNTLNL 168 >gi|332970913|gb|EGK09889.1| ribosome-associated GTPase EngA [Psychrobacter sp. 1501(2011)] Length = 473 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKST+ N+ + ++V TR G + V +DT GI A Sbjct: 6 VVALIGRPNVGKSTIFNQMTKTRQALVADLSGLTRDRQYGDATYNNKSFVVIDTGGIGEA 65 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + M S + I ADI+ VVD+ + ++ K + + L+ NKI Sbjct: 66 DDGRGGIDDYMSAQSHTAIHEADIIVFVVDARAGMIGADAEIGKMLHTLGKPVYLVANKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D V + A + + + + ++A+ G G ++L+ L +P Sbjct: 126 DGVH-----DAAPAEFYALGLGEPYPMTASHGRGIGNLLDDLTENMP 167 Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 7/164 (4%) Query: 16 VQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 V++ + G +A++G N GKSTLVNR +G +V TTR + V Sbjct: 170 VEEEDQGGLKLAIIGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSIYIPYERNGKNYVL 229 Query: 75 LDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +DT G+ + K + + IK +++V V+D+ + +L Sbjct: 230 IDTAGVRRRGRIDEKVEKFSVVKTLQAIKDSNVVVAVIDAQEGIVDQDLHMLGYALDAGR 289 Query: 132 RLILILNKIDCVK-PERLLEQAEIANKLVFIE--KTFMVSATKG 172 +++ +NK D + ++ L + EI + FI K +SA G Sbjct: 290 AIVVAINKWDGLSDDQKDLIRFEIERRFNFIPYVKVHFISALHG 333 >gi|289578647|ref|YP_003477274.1| ribosome-associated GTPase EngA [Thermoanaerobacter italicus Ab9] gi|289528360|gb|ADD02712.1| ribosome-associated GTPase EngA [Thermoanaerobacter italicus Ab9] Length = 439 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 10/178 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 V++VG N GKSTL N+ +G ++SIV K TR + G + + +DT G+ +A Sbjct: 6 VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRICGNAEWLNKKFILVDTGGLDPDA 65 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D + K+ +++ + I+ ++++ +VD+ L ++ + + +IL+ NK+D Sbjct: 66 EDIIFSKVRLQVE-AAIEASEVILFLVDAKEGLMPEDEEIADILRRAKKEIILVCNKVDN 124 Query: 143 VK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K P + + + +SA+ G G ++L+ + LP YS + I Sbjct: 125 FKELPPTYYDFFSLG-----LGNPIPISASNGLGIGELLDEIVKKLPQEGLEYSEETI 177 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+LVN+ +G + IV+ TTR + S+ V +DT GI Sbjct: 179 IAVIGRPNVGKSSLVNKILGEERVIVSDIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + + + I+ +DI L++D+ + + +I+++NK D Sbjct: 239 RISESIERYSVLRALTAIERSDICLLMIDAIEGPAEQDTKIAGYAFENGKGIIIVVNKWD 298 Query: 142 CVK 144 +K Sbjct: 299 AIK 301 >gi|296129768|ref|YP_003637018.1| ribosome-associated GTPase EngA [Cellulomonas flavigena DSM 20109] gi|296021583|gb|ADG74819.1| ribosome-associated GTPase EngA [Cellulomonas flavigena DSM 20109] Length = 515 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 16/194 (8%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 M + + H + D R VALVG N GKS+L+N+ VG++ +V TTR V Sbjct: 237 MRALPTVSAHATPLPDGPRR--VALVGRPNVGKSSLLNKVVGSERVVVDDLAGTTRDPVD 294 Query: 63 GIVSEKESQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 +V+ VF+DT GI + D Y L + + I+ A++ ++VD+ + + Sbjct: 295 ELVALGGKPWVFVDTAGIRRRVHQTSGADFYASLRTQ---AAIEKAEVAVVLVDASQPMT 351 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIE--KTFMVSATKG 172 +++++ L++ NK D + +R LE+ EI +LV ++ VSA G Sbjct: 352 EQDIRIVQQVIDAGRALVVAYNKWDLMDEDRRPYLER-EIEQQLVHVQWAPRVNVSARTG 410 Query: 173 HGCDDVLNYLCSTL 186 D ++ L +L Sbjct: 411 WHTDRLVPALERSL 424 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 82 VLAVVGRPNVGKSTLVNRILGRREAVVEDNPGVTRDRVSYPAEWSGRRFTLVDTGGWEVD 141 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + + + I AD V VVD+ +++ + + ++L+ NK+D Sbjct: 142 VAGIDKRVAQQAEVAIDLADAVLFVVDATVGSTDTDEQVVRLLRRSGKPVVLVANKVDGP 201 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E A + L E +SA G G D+L+ LP Sbjct: 202 AVE---ADAAVLWSLGLGEP-HPISALHGRGTGDLLDAAMRALP 241 >gi|197302999|ref|ZP_03168047.1| hypothetical protein RUMLAC_01725 [Ruminococcus lactaris ATCC 29176] gi|197297854|gb|EDY32406.1| hypothetical protein RUMLAC_01725 [Ruminococcus lactaris ATCC 29176] Length = 442 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 4/142 (2%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 I F E +D+ R VA+VG N GKS+++NR +G IV+ TTR + + Sbjct: 162 IAHFPESDGTEEDDDRP-RVAIVGKPNVGKSSIINRLLGENRVIVSDIAGTTRDAIDTEI 220 Query: 66 SEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + VF+DT G+ K+ + I + S ++ AD+V +V+D+ + + Sbjct: 221 VHNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVSAVERADVVLMVIDATEGVTEQDAKI 280 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 +R +I+++NK D ++ Sbjct: 281 AGIAHERGKGVIIVVNKWDAIE 302 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + V + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVDWLDREFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 ++D M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SRDIILSQMREQAQIAIDTADVIIFITDVKQGL-VDSDSKVADMLRRSGKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + I +SA G D+L+ + + P Sbjct: 124 NFD-KYMADVYEFYN--LGIGDPIPISAASRLGLGDMLDAVIAHFP 166 >gi|163839487|ref|YP_001623892.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209] gi|162952963|gb|ABY22478.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209] Length = 526 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 19/193 (9%) Query: 5 EITFFNEHKDFVQDNSRSGCV---ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI ++ + N R V A+ G TNAGKS+++NR A V + T V Sbjct: 284 EIAAMKPAREAKRANRRRSEVPSAAIAGYTNAGKSSILNRLTHAGVLVQNALFATLDPTV 343 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI- 119 R + DT G + + R + + AD++ VVD SH + + I Sbjct: 344 RKAATPDGIGFTLADTVGFVRSLPTQLVEAFRSTLEEVADADLILHVVDVSHPDPEGQIA 403 Query: 120 --HDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 ++L E+ R I++LNK D P +RL ++ ++ +VSA G G Sbjct: 404 AVREVLSEVDARKIPEIIVLNKADAADPLVIQRLTQRE---------TRSVLVSARTGQG 454 Query: 175 CDDVLNYLCSTLP 187 D++L + +P Sbjct: 455 IDELLELISQAIP 467 >gi|153812950|ref|ZP_01965618.1| hypothetical protein RUMOBE_03357 [Ruminococcus obeum ATCC 29174] gi|149830897|gb|EDM85987.1| hypothetical protein RUMOBE_03357 [Ruminococcus obeum ATCC 29174] Length = 441 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + V+ + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKSFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + D M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SGDIILSQMREQAQIAIDTADVIVFITDVQQGL-VDSDAKVADMLRRSQKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V+ + +++ E N + I + +SA G D+L+ + P Sbjct: 124 SVQ-KYMMDVYEFYN--LGIGEPVAISAANRTGIGDMLDEIIKEFP 166 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKS+L+N+ +G IV+ TTR V V K+ + +F+DT G+ Sbjct: 180 VAVVGKPNVGKSSLINKLLGEDRVIVSDIAGTTRDAVDAKVKWKDREYIFIDTAGLRRKG 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + + ++ AD+V +V+D+ + + +R +I+ +NK D Sbjct: 240 KIKEEIERYSVIRTVTAVERADVVVVVIDATEGVTEQDAKIAGIAHERGKGVIIAVNKWD 299 Query: 142 CVKPE 146 V+ + Sbjct: 300 AVEKD 304 >gi|332687269|ref|YP_004457043.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus plutonius ATCC 35311] gi|332371278|dbj|BAK22234.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus plutonius ATCC 35311] Length = 466 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 6/157 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N + + +IVT TTR + ++ + + +DT G Sbjct: 225 REGLSTVIVGRPNVGKSSLLNHLLKEEKAIVTDVAGTTRDTIEEYINLRGIPLKLVDTAG 284 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S ++ AD++ LV++ EL LL E+ R+IL LNK Sbjct: 285 IHETEDIVEKIGVEKSRQALQTADLIVLVLNQSEELTNEDQQLL-EMTGGLKRIIL-LNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D P + LE+ ++ + L E+ VS G D Sbjct: 343 MDL--PNQ-LEKEKLRSFLSDQEELLPVSVLSSEGID 376 >gi|315640365|ref|ZP_07895480.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952] gi|315483870|gb|EFU74351.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952] Length = 465 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 6/150 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + + +IVT TTR ++ V+ + + +DT GI +D Sbjct: 232 IIGRPNVGKSSLLNHLLREEKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDI 291 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ ++ S + AD++ LV++ L LL+ A +++ I++LNK D P Sbjct: 292 VERIGVQRSRQALAKADLILLVLNQSEPLSEEDRQLLQ--ATDATKRIVLLNKTDL--PS 347 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + L+++ +A+ LV F VS + G D Sbjct: 348 Q-LDRSALAS-LVGDAPVFEVSVLENAGLD 375 >gi|237745517|ref|ZP_04575997.1| HflX GTP-binding protein [Oxalobacter formigenes HOxBLS] gi|229376868|gb|EEO26959.1| HflX GTP-binding protein [Oxalobacter formigenes HOxBLS] Length = 379 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 13/159 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL N A T + R I E +V DT G Sbjct: 192 SLSLVGYTNAGKSTLFNAMTKAGTYAADQLFATLDTTSRRIYLESVGNVVVSDTVGFI-- 249 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILIL 137 ++ H+L+ R + HAD++ VVD+ ++ ++ +L+EI R +LI Sbjct: 250 RELPHQLVAAFRATLEETIHADLLLHVVDAANPMRNEQIDEVNTVLEEIGARDVPQLLIW 309 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID + LE+ E I + F VSA G G D Sbjct: 310 NKIDAAGLKPALERDEYGK----ISRVF-VSARTGEGLD 343 >gi|206890575|ref|YP_002249177.1| ribosome-associated GTPase EngA [Thermodesulfovibrio yellowstonii DSM 11347] gi|238058979|sp|B5YFX9|DER_THEYD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|206742513|gb|ACI21570.1| ribosome-associated GTPase EngA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 448 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 10/170 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGA--KVSIVTHKVQ-TTRSIVRGIVSEKESQIVFLDTPGI 80 V +VG N GKSTL NR + + K+ +T K TR I G+ + + + +DT G Sbjct: 3 TVVIVGRPNVGKSTLFNRMIKSDEKIKAITDKFPGVTRDINYGVAKWDDKEFIVVDTGGF 62 Query: 81 F---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 F +D K M+ I AD++ ++DS L + + +++ + ++ ++ Sbjct: 63 FPEEKIEDIIQKQMLEQIEMAISDADLIIHLLDSKEGLLPDDIETARQLRQTGKDILWVV 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NKID P +L + + + E+ +S G+G D++++ + +P Sbjct: 123 NKID--DPSKLSRIYDFYS--IGTEELIPISGITGYGFDELIDKIIEKIP 168 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 18/154 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKST++N +G K IV+ TTR + I + + + +DT GI + Sbjct: 183 IAVVGRPNVGKSTIINALLGKKRMIVSPIPGTTRDTIDAICTYYGKKYLLIDTAGI--KR 240 Query: 85 DSYHKLMI-------RLSW----STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 SY+K I RL++ +I+ AD+ LV+D+ + + +A++ L Sbjct: 241 LSYYKKEISQEIYVERLAYFKALRSIERADVAILVIDALEGIVNQDQKIAGIVAEQKKGL 300 Query: 134 ILILNKIDCVKPERLLEQA-----EIANKLVFIE 162 I+++NK D + ++A EI +KL F++ Sbjct: 301 IILINKWDLIPANERDKKAKFFTDEIKHKLWFVD 334 >gi|163751386|ref|ZP_02158611.1| tRNA modification GTPase [Shewanella benthica KT99] gi|161328689|gb|EDP99837.1| tRNA modification GTPase [Shewanella benthica KT99] Length = 453 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 26/150 (17%) Query: 6 ITFFNEHKDFVQDNSRSGC--------------------------VALVGATNAGKSTLV 39 I F +E DF+ D SG V + G NAGKS+L+ Sbjct: 173 IDFPDEEVDFLSDGKISGSLNKIITKLDSVKASAKQGSIIREGMKVVIAGRPNAGKSSLL 232 Query: 40 NRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 N G + +IVT TTR ++R + + +DT G+ D+ K+ I +W+ I Sbjct: 233 NALAGKETAIVTEVAGTTRDVLREHIHLDGMPLHIIDTAGLRETVDTVEKIGIERAWAEI 292 Query: 100 KHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 + AD V ++D V+ H++ + R Sbjct: 293 ETADQVLFMLDGTTTDAVDPHEIWPDFIDR 322 >gi|121998021|ref|YP_001002808.1| tRNA modification GTPase TrmE [Halorhodospira halophila SL1] gi|205829155|sp|A1WWE4|MNME_HALHL RecName: Full=tRNA modification GTPase mnmE gi|121589426|gb|ABM62006.1| tRNA modification GTPase trmE [Halorhodospira halophila SL1] Length = 469 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 9/163 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG NAGKS+L+N G + +IV+ + TTR +VR + LDT G+ + Sbjct: 233 VALVGPPNAGKSSLLNVLSGEEAAIVSAQAGTTRDVVRQWAALGSRHAELLDTAGLRDAE 292 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A+D R + + AD++ +V+++ + L + + E A R +++I+NKID Sbjct: 293 AQDEIEAEGARRARAAASEADLLLVVIEAGKTLDEELRARIAEQAPRP--VVVIVNKIDA 350 Query: 143 VKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 E E ++E+ + + VSA G G + + L + Sbjct: 351 SGDEAGWEGESEVGAHV----RRARVSAHTGAGIEALRRGLAA 389 >gi|89901081|ref|YP_523552.1| GTP-binding protein EngA [Rhodoferax ferrireducens T118] gi|122479081|sp|Q21W32|DER_RHOFD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89345818|gb|ABD70021.1| Small GTP-binding protein domain [Rhodoferax ferrireducens T118] Length = 447 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VALVG N GKSTL NR ++ +IV TR G + + + + +DT G + Sbjct: 4 VVALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNAKQGKHEFIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID- 141 A K M + + + AD+V VVD+ + H++ K + + +L NK + Sbjct: 64 AAGGIFKEMAKQTTQAVAEADVVIFVVDAREGISAQDHEIAKYLRRLGKPCVLAANKAEG 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + +L+E E+ + + +SA G G +++ + L L Sbjct: 124 MLAGAQLVEFFELG-----LGEVHAISAAHGQGIRTLVDLALAPLHL 165 Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 8/172 (4%) Query: 11 EHKDFVQDNSRSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 E +D + G + A+ G N GKSTL+N ++G + + TTR + Sbjct: 166 EDQDDADEQREPGIIKLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERN 225 Query: 69 ESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 + +DT G+ ++ K + + I+ +++V L++D+ + + + Sbjct: 226 GQKFELVDTAGLRRRGKVFEAIEKFSVVKTLQAIESSNVVLLLIDATQGVTDQDAHIAGY 285 Query: 126 IAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIEKTFM--VSATKGHG 174 I + +++ +NK D V +R L + I +L F++ M +SATK G Sbjct: 286 ILENGRAVVIAVNKWDAVDEYQRELVKRSIETRLPFLKFATMHLISATKRQG 337 >gi|302866909|ref|YP_003835546.1| ribosome-associated GTPase EngA [Micromonospora aurantiaca ATCC 27029] gi|315506749|ref|YP_004085636.1| ribosome-associated gtpase enga [Micromonospora sp. L5] gi|302569768|gb|ADL45970.1| ribosome-associated GTPase EngA [Micromonospora aurantiaca ATCC 27029] gi|315413368|gb|ADU11485.1| ribosome-associated GTPase EngA [Micromonospora sp. L5] Length = 468 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 8/189 (4%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 G + D + VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 7 GWVELREPEADSGEPTGPQPVVAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPY 66 Query: 64 IVSEKESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 +DT G +AKD + + + AD+V VVD+ ++ + Sbjct: 67 DAQWNGRAFTVVDTGGWEPDAKDRAAAIAAQAE-IAVVTADVVLFVVDAMVG-STDVDEA 124 Query: 123 LKEIAKRSSR-LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 ++ +RS++ +IL+ NK D E +E + + + + + F VSA G G D+L+ Sbjct: 125 AVKMLRRSAKPVILVANKADNTTIE--MEATSLWS--LGLGEPFPVSALHGRGSGDLLDA 180 Query: 182 LCSTLPLAP 190 + LP AP Sbjct: 181 ILDALPEAP 189 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+NRF G + ++V TT V +V +DT G + Sbjct: 202 VALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVDSLVEIGGETWQLVDTAGLRKRV 261 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A + + +R + S I+ A++ +++DS + +L + + L++ NK Sbjct: 262 GKASGTEYYASLRTA-SAIEAAEVAVVLIDSSEVISEQDQRILTMVVESGRALVIAFNKW 320 Query: 141 DCVKPER 147 D V +R Sbjct: 321 DLVDGDR 327 >gi|86147167|ref|ZP_01065483.1| tRNA modification GTPase [Vibrio sp. MED222] gi|85835051|gb|EAQ53193.1| tRNA modification GTPase [Vibrio sp. MED222] Length = 453 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + D+ + R + + +I NK D Sbjct: 278 DEVEKIGIERAWEEIAQADRVLFMVDGTTTDATDPKDIWPDFVDRLPNNIGMTVIRNKAD 337 Query: 142 CVKPE 146 E Sbjct: 338 QTSEE 342 >gi|297544868|ref|YP_003677170.1| ribosome-associated GTPase EngA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842643|gb|ADH61159.1| ribosome-associated GTPase EngA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 439 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 10/178 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 V++VG N GKSTL N+ +G ++SIV K TR + G + + +DT G+ +A Sbjct: 6 VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRICGNAEWLNKKFILVDTGGLDPDA 65 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D + K+ +++ + I+ ++++ +VD+ L ++ + + +IL+ NK+D Sbjct: 66 EDIIFSKVRLQVE-AAIEASEVILFLVDAKEGLMPEDEEIADILRRAKKEIILVCNKVDN 124 Query: 143 VK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 K P + + + +SA+ G G ++L+ + LP YS + I Sbjct: 125 FKELPPTYYDFFSLG-----LGNPIPISASNGLGIGELLDEIVKKLPQEGLEYSEETI 177 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+LVN+ +G + IV+ TTR + S+ V +DT GI Sbjct: 179 IAVIGRPNVGKSSLVNKILGEERVIVSDIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + + + I+ +DI L++D+ + + +I+++NK D Sbjct: 239 RISESIERYSVLRALTAIERSDICLLMIDAIEGPAEQDTKIAGYAFENGKGIIIVVNKWD 298 Query: 142 CVK 144 +K Sbjct: 299 AIK 301 >gi|260911951|ref|ZP_05918515.1| thiophene and furan oxidation protein ThdF [Prevotella sp. oral taxon 472 str. F0295] gi|260633898|gb|EEX52024.1| thiophene and furan oxidation protein ThdF [Prevotella sp. oral taxon 472 str. F0295] Length = 460 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+NR + + +IV+ TTR ++ + F+DT GI Sbjct: 228 VAIVGKTNVGKSTLLNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFIDTAGIRKTS 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D L I ++ + A +V V+D L I ++ + R RLI++ NK D Sbjct: 288 DEIESLGIERTYQKLTEAAVVLWVIDKAPSLS-EIEEM--DAHTRGKRLIVVSNKND 341 >gi|242255914|gb|ACS88941.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGIGALIDAILSALDL 168 >gi|330752592|emb|CBL87538.1| GTP-binding protein [uncultured Flavobacteria bacterium] Length = 447 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 5/172 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q N G VA+VG N GKST NR V + +IV + TR G +D Sbjct: 10 QINMMGGIVAIVGRPNVGKSTFFNRMVQKRDAIVDSQSGVTRDRHYGKSDWNGRGFTLID 69 Query: 77 TPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 T G N++D + K + + ++ AD + +VD + ++ K + + S + L Sbjct: 70 TGGYLENSEDVFQKEIDKQVSLAVEEADAIIFIVDVIDGVTGMDQNIAKLLRRSSKPIYL 129 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +NK+D ++ + F + +S+ G G ++L+ L S +P Sbjct: 130 AINKVDNTSRTQMTSEFYSLGYKNF----YCISSVSGSGTGELLDDLISQMP 177 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA-- 83 A+VG NAGKS+ +N +G + +IVT TTR + +DT GI Sbjct: 191 AVVGRPNAGKSSFINAIIGKERNIVTKIAGTTRDSINSRYKRFGFDFNLIDTAGIRKKTK 250 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ I S +I++AD+ L+VD+ R + ++ + + +++++NK D Sbjct: 251 IKEDIEFYSIMRSVRSIEYADVCILIVDATRGFDGQVQNIFWLTHRNNKGIVILVNKWD- 309 Query: 143 VKPERLLEQAEIANK 157 L E++ A K Sbjct: 310 -----LFEKSSNATK 319 >gi|328544034|ref|YP_004304143.1| GTP-binding protein engA [polymorphum gilvum SL003B-26A1] gi|326413778|gb|ADZ70841.1| GTP-binding protein engA [Polymorphum gilvum SL003B-26A1] Length = 472 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 7/164 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 VA++G N GKSTL NR VG ++++V TR G + + +DT G+ Sbjct: 2 GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTVIDTAGLE 61 Query: 82 NA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 +A S M + I AD+V V+D+ R + E+A+RS R +IL+ NK Sbjct: 62 DADATSLEGRMRAQTEEAIAEADVVLFVIDA-RSGVTPLDSHFAEVARRSDRPVILLANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + E L A + + +SA G G D+ L Sbjct: 121 AEGRAGEGGLYDA----FALGLGDPVAISAEHGEGLADLYEALL 160 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 20/187 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+NR +G + + + TR + ++ + DT GI Sbjct: 204 VAIVGRPNAGKSTLINRMIGEERMLTGPEAGITRDSISVDWLWRDHHVKLFDTAGIRRKA 263 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ KL + + IK A++V + +D+ + ++ +A+ L++ +NK D Sbjct: 264 RVQEKLEKLSVADALRAIKFAEVVVVTLDATNAFEKQDLQIIDLVAREGRALVIAINKWD 323 Query: 142 CVKPERLLEQA------EIANKLVFIEKTFMVSATKGHGCD----------DVLNYLCST 185 V+ QA N++ ++ +S +G G D DV N ST Sbjct: 324 LVEDREAAWQAIRDAQDRYLNQIRGVQ-IATISGIQGQGIDRLMEAVFTAYDVWNTRIST 382 Query: 186 LPLAPWV 192 L W+ Sbjct: 383 ARLNRWL 389 >gi|298291071|ref|YP_003693010.1| ribosome-associated GTPase EngA [Starkeya novella DSM 506] gi|296927582|gb|ADH88391.1| ribosome-associated GTPase EngA [Starkeya novella DSM 506] Length = 449 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG ++++V + TR G +DT G+ A Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDGRLGHLSFRVIDTAGLEEA 63 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSR-LILILNKI 140 K +S M + + I AD++ ++D+ + V D ++A+RS + ILI NK Sbjct: 64 KAESLEGRMRAQTEAAIDDADVLLFLIDA--KAGVTPSDRAFADLARRSGKHTILIANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + R E + + + +SA G G D++ L LP Sbjct: 122 EA----RGSEGGTLDAYALGLGDPVELSAEHGDGMADLVRALAECLP 164 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 26/190 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G NAGKSTL+N +G + + TR + + + DT G+ Sbjct: 184 VAVLGRPNAGKSTLINALLGEDRLLTGPEAGITRDSIAVDIERHGVALRVFDTAGMRKRA 243 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSSR-LILIL 137 D KL + + A++V +++D+ E + I DL A+R R ++L L Sbjct: 244 RIDDKLEKLSVADGLRAARFAEVVVVLMDATHPFEEQDLRIADL----AEREGRAVVLAL 299 Query: 138 NKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCD----------DVLNYL 182 +K D VK + R+ E+A+ + +VS G G D V N Sbjct: 300 SKADLVKDQPGIVKRMREEADHWLPQLRGAPVVLVSGLTGEGLDRLVRAVSEAHQVWNRR 359 Query: 183 CSTLPLAPWV 192 +T PL W+ Sbjct: 360 VATNPLNRWL 369 >gi|296116360|ref|ZP_06834975.1| GTP-binding protein EngA [Gluconacetobacter hansenii ATCC 23769] gi|295977060|gb|EFG83823.1| GTP-binding protein EngA [Gluconacetobacter hansenii ATCC 23769] Length = 470 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 7/133 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL+NR +G + I + TR V ++ + E I +DT G+ Sbjct: 205 LAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVSVMLHDDEGPIQLVDTAGLRRKA 264 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 ++ K+ + S +K A++V L +D+ L V+ DL + + +R R +L LNK Sbjct: 265 RIDETLEKMSVSASIEALKMAEVVILALDA--TLGVHEQDLQIARLIEREGRCCVLALNK 322 Query: 140 IDCVKPERLLEQA 152 D V+ + QA Sbjct: 323 WDAVEDRNVTRQA 335 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 19/175 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 V + G N GKST+ NR VG + ++V TR + + +I +DT G+ Sbjct: 15 VVVIAGRPNVGKSTIFNRLVGRRQALVADTPGVTRDRKESETTVRGRRIRLIDTAGLEEA 74 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSRLILIL-N 138 A D+ M S S + AD+V VD+ + I + A +R R +L+L N Sbjct: 75 APDTLFGRMRASSESAVAMADLVLFCVDA----RAGITPADEHFAAWLRRQGRPVLVLAN 130 Query: 139 KIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 K + Q A F + +SA G G D++ + +P P Sbjct: 131 KAEG-------RQGAAAAMEAFSLGLGAPLGISAEHGEGLADLMGEIADRIPAGP 178 >gi|260774975|ref|ZP_05883875.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio coralliilyticus ATCC BAA-450] gi|260609065|gb|EEX35224.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio coralliilyticus ATCC BAA-450] Length = 453 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I+ AD V +VD + ++ + R + + +I NK+D Sbjct: 278 DEVEKIGIERAWEEIEQADRVLFMVDGTTTDATDPKEIWPDFVDRLPSNIGMTVIRNKVD 337 >gi|261402977|ref|YP_003247201.1| GTP-binding proten HflX [Methanocaldococcus vulcanius M7] gi|261369970|gb|ACX72719.1| GTP-binding proten HflX [Methanocaldococcus vulcanius M7] Length = 408 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 28/181 (15%) Query: 24 CVALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 V L+G TNAGK++L+N G +K + T TTR+I +GI + +I+ DT G Sbjct: 187 SVGLIGYTNAGKTSLLNILTGEDKESKNQVFTTLTTTTRAI-KGI----KRKILITDTVG 241 Query: 80 IFNAKDSYHKLMIRLSWSTIK---HADIVCLVVDS-------HRELKVNIHDLLKEIAKR 129 D MI STI+ ++D++ +VVDS R+LKVN H++L +I + Sbjct: 242 FM---DDLPPFMIEAFLSTIEESANSDLILIVVDSSDSIEEIERKLKVN-HEILSKINCK 297 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 S +I +LNK+D + ++ + EI +KL ++ VSA G D +++ + L L Sbjct: 298 SP-IITVLNKVDKISEKK---KNEIIDKLERYLVNPIFVSARYGENIDLLISKILENLNL 353 Query: 189 A 189 + Sbjct: 354 S 354 >gi|257453876|ref|ZP_05619154.1| ribosome-associated GTPase EngA [Enhydrobacter aerosaccus SK60] gi|257448803|gb|EEV23768.1| ribosome-associated GTPase EngA [Enhydrobacter aerosaccus SK60] Length = 467 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKSTL N+ ++ ++V TR G + +E + +DT GI Sbjct: 4 VVALIGRPNVGKSTLFNQLTRSRQALVADLAGLTRDRQYGDATFEEKSFIVIDTGGIGEV 63 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + M S + I ADI+ VVDS + + K++ + L NK+ Sbjct: 64 DEGDGTIDDYMSHQSHTAIHEADIIVFVVDSRAGITGADEVIAKQLHTLGKPVFLAANKM 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D V + E + + F ++A+ G G ++L + + +P Sbjct: 124 DGVHEAAIHEFYALG-----FGEPFPMAASHGRGVGNLLEAVTANMP 165 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 6/160 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTLVNR +G + +V TTR + V +DT G+ Sbjct: 179 IAIIGRPNVGKSTLVNRLLGEERVVVFDMPGTTRDSIYIPYERDNRHYVLIDTAGVRRRG 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + IK A +V +V+D+ + +LL + ++L +NK D Sbjct: 239 RIDEKVEKFSVVKTLQAIKDAHVVIVVIDAQEGITDQDLNLLGYALEAGRAMVLAINKWD 298 Query: 142 CV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 + + ++ + E+ + FI K ++SA G G ++ Sbjct: 299 GLDQDQKNFVKIEMDRRFNFIPYVKVHLISALHGTGVGNL 338 >gi|257460130|ref|ZP_05625234.1| ribosome-associated GTPase EngA [Campylobacter gracilis RM3268] gi|257442571|gb|EEV17710.1| ribosome-associated GTPase EngA [Campylobacter gracilis RM3268] Length = 461 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 20/181 (11%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L NR GA+++I + TTR R + ++ +D+ G+ + + Sbjct: 6 IIGRPNVGKSSLFNRLAGARIAITSDVAGTTRDTNRAEAEIFDRRVRVIDSGGLDDTSEL 65 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDS-------HRELKVNIHDLLKEIAKRSSRLILILNK 139 + ++ + + S K AD++ + D R + ++ L K IA L +NK Sbjct: 66 FARVQAK-TLSEAKSADLIIFMTDGKLLPSDDERRIFFSLQRLGKPIA-------LAVNK 117 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 ID + E E++ N+ F K F +S + G D++ ++ L AP D+I Sbjct: 118 IDGKRDE---ERSWEFNE--FGVKFFPISVSHNSGIDELKEWIYGFLDPAPARQDEDEIF 172 Query: 200 D 200 D Sbjct: 173 D 173 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 2/125 (1%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S++ V ++G N GKS+L+N VG++ S+V+ TT V + F+DT G Sbjct: 196 SKTIGVGIIGRVNVGKSSLLNALVGSQRSVVSDYAGTTIDPVNESTEFGGRTLEFIDTAG 255 Query: 80 IFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 I + + + + ++++DI LV+D+ L + AK LI+IL Sbjct: 256 IRRRGKIEGIERFALNRTEKILQNSDITLLVLDASEPLNELDERIAGLAAKFELGLIIIL 315 Query: 138 NKIDC 142 NK D Sbjct: 316 NKWDL 320 >gi|225631062|ref|ZP_03787800.1| GTP-binding protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591242|gb|EEH12386.1| GTP-binding protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 441 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 22/212 (10%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 G I FNE+ + + +A++G N GKST +N + I + + TTR V Sbjct: 157 GVIENFNENTELPNNELSRLRIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDI 216 Query: 64 IVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 I +DT GI N D + S +IK + +V L++DS ++ Sbjct: 217 TYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDL 276 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE------RLLEQAEIANKLVFIE-KTFMVSATKGH 173 + + K +I++LNK D + + + ++Q E+ +F+E T +SA KG Sbjct: 277 SIGEAAIKGGKGIIVVLNKWDLIGKDDRSRLIKFVKQQEVTR--LFLEVPTITISALKGM 334 Query: 174 GCDDV----------LNYLCSTLPLAPWVYSA 195 DV LN ST L W+ A Sbjct: 335 RSGDVIDKCLEVSESLNKKISTAKLNKWLIDA 366 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL NR VG K ++V++ TR G+ + + +DT G +N + Sbjct: 4 IAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGG-WNDQ 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 ++ +I ++ +++I+ +VD+ + + N + K + ++ ++ +IL+ NK + Sbjct: 63 TNFSLQVIEQIEFSLSNSNIIFFLVDAKVQNERN-EEFAKWLKRKINKPVILVANKCESH 121 Query: 144 KPERL 148 K E + Sbjct: 122 KSENV 126 >gi|254456774|ref|ZP_05070202.1| tRNA modification GTPase TrmE [Campylobacterales bacterium GD 1] gi|207085566|gb|EDZ62850.1| tRNA modification GTPase TrmE [Campylobacterales bacterium GD 1] Length = 446 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N + +IV+ TTR + V I +DT GI A Sbjct: 218 VAIVGKPNVGKSSLLNSLLNYNRAIVSEIAGTTRDTIEEQVKIGTHLIRIVDTAGIREAN 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDC 142 D ++ I S I+ +DIV + D R L +L + K ++ +I + NKID Sbjct: 278 DEIERIGIERSLEAIQESDIVVALFDGSRVLDAEDEQILALVDKHTKNKHVIFVKNKIDL 337 >gi|281357768|ref|ZP_06244254.1| tRNA modification GTPase TrmE [Victivallis vadensis ATCC BAA-548] gi|281315715|gb|EFA99742.1| tRNA modification GTPase TrmE [Victivallis vadensis ATCC BAA-548] Length = 442 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 13/158 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKS+L+NR +G + +IVT TTR + + + DT GI ++ D Sbjct: 216 IAGRPNAGKSSLLNRLLGMERAIVTSIPGTTRDTIEASTVLRGLPVRLTDTAGIRSSSDP 275 Query: 87 YHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 +L + S +I+ A + ++D S EL + + ++ + A I + NK+D + P Sbjct: 276 IEQLGVERSRRSIEGAQVTFWLLDASGDELDLELAEMARHPAPGR---IAVWNKLD-LAP 331 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 +R L + + T +SA G G + +L+ Sbjct: 332 QRALPELD--------GPTVRISAKTGEGIEKLLDAFA 361 >gi|134301153|ref|YP_001114649.1| tRNA modification GTPase TrmE [Desulfotomaculum reducens MI-1] gi|189036201|sp|A4J9S1|MNME_DESRM RecName: Full=tRNA modification GTPase mnmE gi|134053853|gb|ABO51824.1| tRNA modification GTPase trmE [Desulfotomaculum reducens MI-1] Length = 461 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 11/153 (7%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N + + +IVT TTR ++ I+S K + +DT G+ +D Sbjct: 227 IVGKPNVGKSSLLNALLHEQRAIVTDIPGTTRDVIEEILSIKGVPLKIIDTAGLRETQDL 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILNKIDCV 143 K+ + S + ADIV V+D+ + + DL+K+ ++++++NKID Sbjct: 287 VEKIGVEKSRELLNQADIVLFVLDATTGISDEDRKVIDLIKD-----KKVLILINKIDIT 341 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 K + ++ EI +L+ + +SA K G D Sbjct: 342 KNK--IDSHEI-RQLINFSEIIEISAQKEIGLD 371 >gi|238797848|ref|ZP_04641340.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969] gi|238718264|gb|EEQ10088.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 279 DEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|315282971|ref|ZP_07871260.1| GTP-binding protein EngA [Listeria marthii FSL S4-120] gi|313613383|gb|EFR87238.1| GTP-binding protein EngA [Listeria marthii FSL S4-120] Length = 191 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + I AD++ + + RE + + + +I RS++ ++L +NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNG-REGVTDADEQVAKILYRSNKPIVLAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +Q L F E + +S + G G D+L+ + + P Sbjct: 123 -NPE-MRDQIYDFYALGFGEP-YPISGSHGLGLGDMLDAVRAHFP 164 >gi|313678873|ref|YP_004056613.1| ribosome-associated GTPase EngA [Mycoplasma bovis PG45] gi|312950564|gb|ADR25159.1| ribosome-associated GTPase EngA [Mycoplasma bovis PG45] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + +A++G N GKSTL NR VG + SI + TR + +I +DT GI Sbjct: 2 KKNVIAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFMWNGKEINVIDTGGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + ++ + I+ A++V +VD + + + + K +I++ NK+ Sbjct: 62 QIEKKDFQDQILIQAKIAIQEANVVIFIVDGQSSITSDDKMIYSMLQKSGKPIIVVANKL 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D + + + + + F +SA G+G DVL+ Sbjct: 122 DNI------SKFDYGWYSLGADHVFRISALHGNGIGDVLD 155 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N+GKS+L+N SIV+ TTR V+ +V + +I +DT GI Sbjct: 174 LSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVKSVVELRGHKIEIIDTAGITKKS 233 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ L ++ + S++ +D+ +++DS REL ++ + + +I+ +NK D Sbjct: 234 KIDDTVEHLALKRAMSSLDESDLSIVLIDSTRELAHFDARIIGYALENNKPIIICVNKWD 293 Query: 142 CV 143 + Sbjct: 294 LI 295 >gi|242255844|gb|ACS88906.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKVLNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILNALNLNP 170 >gi|160914941|ref|ZP_02077155.1| hypothetical protein EUBDOL_00949 [Eubacterium dolichum DSM 3991] gi|158433481|gb|EDP11770.1| hypothetical protein EUBDOL_00949 [Eubacterium dolichum DSM 3991] Length = 442 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 9/140 (6%) Query: 14 DFVQDNSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D + D + SG + A++G N GKS+L+N + +IVT TTR IV G + Sbjct: 204 DEILDKANSGQMLKEGIKTAIIGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDIVEGRIH 263 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT GI +D ++ I+ S I+ A +V +V+D RE+ LL + Sbjct: 264 LSGLTLHLIDTAGIRETEDVVEQIGIQRSIKAIEEAQLVIVVLDGSREIDAEDEKLLA-L 322 Query: 127 AKRSSRLILILNKIDCVKPE 146 AK + I++ NK D + E Sbjct: 323 AKDKTH-IVVYNKSDLKQHE 341 >gi|122701545|emb|CAL88162.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALDLNP 170 >gi|115252797|emb|CAK98233.1| putative trna modification gtpase protein [Spiroplasma citri] Length = 449 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + +IV+ TTR IV G ++ + +DT G+ Sbjct: 219 VLILGKPNVGKSSLLNALMNENKAIVSELPGTTRDIVEGKINLGPLTLNIIDTAGLRETV 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I + + +AD++ +V D++ +L +N++ LKE+ K L L+LNK D + Sbjct: 279 DKIEQIGIEKARQQVINADLILIVADNYADL-INLNLELKELIKNKEYL-LVLNKTDLLN 336 Query: 145 PE 146 + Sbjct: 337 MQ 338 >gi|254501747|ref|ZP_05113898.1| putative GTPase [Labrenzia alexandrii DFL-11] gi|222437818|gb|EEE44497.1| putative GTPase [Labrenzia alexandrii DFL-11] Length = 478 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 11/168 (6%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+ VA+VG N GKSTL NR VG ++++V TR G + + +DT Sbjct: 2 NAVGATVAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTIIDTA 61 Query: 79 GIFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSR-LIL 135 G+ +A K S M R + I+ AD V V+D+ + ++ H +A++++R +IL Sbjct: 62 GLEDADKASLEGRMRRQTEEAIETADAVLFVIDARAGVTPLDAH--FAAVARKTTRPVIL 119 Query: 136 ILNKIDC-VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + NK + L E + + + VSA G G D+ + L Sbjct: 120 LANKAEGRAGVSGLYESFSLG-----LGEPIAVSAEHGEGLSDLYDAL 162 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 21/212 (9%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E GEI +++D V R VA+VG NAGKSTL+N+ VG + + TR + Sbjct: 188 EDGEIV---DNEDPVGTIERPLRVAIVGRPNAGKSTLINQMVGEDRMLTGPEAGITRDSI 244 Query: 62 RGIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN 118 + + I DT GI ++ KL + + IK A++V + +D+ + Sbjct: 245 SVDWTWHDRHIKLFDTAGIRKKARVQEKLEKLSVADALRAIKFAEVVVVTLDATMSFEKQ 304 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE----KTFMVSATKGH 173 ++ +A+ L++ +NK D ++ E ++ AN+ F + + +S +G Sbjct: 305 DLQIIDLVAREGRALVIAVNKWDLIEDREEAWKKIRDANERYFNQIRGVRIVTLSGIQGQ 364 Query: 174 GCD----------DVLNYLCSTLPLAPWVYSA 195 G D D N ST L W+ A Sbjct: 365 GIDRLVEGVFAAYDAWNARVSTAGLNRWLERA 396 >gi|254446956|ref|ZP_05060423.1| GTP-binding proten HflX [gamma proteobacterium HTCC5015] gi|198263095|gb|EDY87373.1| GTP-binding proten HflX [gamma proteobacterium HTCC5015] Length = 448 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 21/179 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A+V T +R +V + ++V DT G Sbjct: 211 TVSLVGYTNAGKSTLFNHITNAEVFAQDQLFATLDPTLRRLVLPDKREMVLADTVGFI-- 268 Query: 84 KDSYHKLMIRLSWSTIKHADIVCL------VVDSHRELKVN-IHDLLKEIAKRSSRLILI 136 +D H L+ ST++ + L V D REL++ + D+L I S I + Sbjct: 269 RDLPHDLVAAFR-STLQETEEASLLLHVIDVADDERELRMQEVEDVLALIGADSVPQIRV 327 Query: 137 LNKIDCVK--PE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 NKID + PE R E E++ +SA G G ++++ L L + +V Sbjct: 328 YNKIDQTERSPELRYGENGEVSE--------VYLSAHTGEGLEELMTALMDALATSQYV 378 >gi|150026003|ref|YP_001296829.1| GTP-binding protein EngA [Flavobacterium psychrophilum JIP02/86] gi|166198714|sp|A6H103|DER_FLAPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149772544|emb|CAL44027.1| GTP-binding protein EngA [Flavobacterium psychrophilum JIP02/86] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 5/170 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + VA+VG N GKSTL NR + + +IV TR G + +DT G Sbjct: 2 NNIVAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYI 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + IR I +D++ VVD + + K + K + ++L +NK+ Sbjct: 62 RGSDDIFEGEIRKQVELAIDESDVIIFVVDVEEGITPMDDAVAKMLRKVTKPVLLAVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D E+ + E N + + + + ++ G G D+L+ L P+ P Sbjct: 122 DNAMREK--DAVEFYN--LGLGEYYTFASISGSGTGDLLDALIDAFPIKP 167 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G + +VT TTR + + +DT GI Sbjct: 180 AVVGRPNAGKSSFINALIGKERFMVTDIAGTTRDSIDTKYDRFGFEFNLVDTAGIRRKAK 239 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I+HAD+ L++D+ R + + K +++++NK D Sbjct: 240 VKEDLEFYSVMRSVRAIEHADVCILIIDATRGFEGQDQSIFWLAEKNRKGVVILVNKWDL 299 Query: 143 VKPERL 148 V+ + + Sbjct: 300 VEKDTM 305 >gi|315223115|ref|ZP_07864983.1| ribosome-associated GTPase EngA [Streptococcus anginosus F0211] gi|315187804|gb|EFU21551.1| ribosome-associated GTPase EngA [Streptococcus anginosus F0211] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTFFNRIAGERISIVEDVEGVTRDRIYATAEWLNRKFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + ADI+ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADIIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE ++EI + + + VS+ G G D+L+ + LP V + D I Sbjct: 123 NPEM---RSEIFDFYALGLGDPYPVSSVHGIGTGDILDAIVENLPNEEAVENPDMI 175 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDNEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|242255876|gb|ACS88922.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKINPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + + K+F +S + G + +++ + STL L Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGINALIDAILSTLNL 168 >gi|258404637|ref|YP_003197379.1| GTP-binding protein EngA [Desulfohalobium retbaense DSM 5692] gi|257796864|gb|ACV67801.1| ribosome-associated GTPase EngA [Desulfohalobium retbaense DSM 5692] Length = 441 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 4/141 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+G N GKS+L+N VG K +V+ + TT IV + +K + +FLD+ G+ Sbjct: 184 LALLGRPNVGKSSLINALVGEKRLVVSPEAGTTTDIVDVLFEKKGKRYIFLDSAGVRRRS 243 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS + + + K A + L +D+ + + LL + + I+ +NK+D Sbjct: 244 KIDDSLERFSVLRALRNSKRAQVTVLCLDALQGVVGQDKKLLSFLDREKIPFIVAVNKVD 303 Query: 142 CVKPERLLE-QAEIANKLVFI 161 V +RL + + N+L F+ Sbjct: 304 LVPSDRLGQLKKYFENELRFL 324 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 5/153 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFN 82 VAL+G N GKSTL NR + + ++ + TR + V E +DT G + + Sbjct: 4 TVALIGRRNVGKSTLFNRLIRKQKALTHDRPGVTRDRLYAEVPHGEPPFALVDTGGLVLD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + + ++ A ++ VVD + + L + + + L++NK+D Sbjct: 64 ESDGVEADVFEQAREAMEGAQLILFVVDGRQGVSTIDEQLAAFLRQTDKPVRLVINKVDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 + LE A VSA G+G Sbjct: 124 AE----LEDTLSAEFYALGFPLSAVSAAHGYGT 152 >gi|227504875|ref|ZP_03934924.1| GTP-binding protein HflX [Corynebacterium striatum ATCC 6940] gi|227198566|gb|EEI78614.1| GTP-binding protein HflX [Corynebacterium striatum ATCC 6940] Length = 486 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 12/166 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G TNAGKS+L+N GA V + T R Q+VF DT G Sbjct: 260 IAIAGYTNAGKSSLINAMTGAGVLVEDALFATLDPTTRRAELADGRQVVFTDTVGFVRHL 319 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLILI 136 + + + + ADI+ VVD + I+D++KE +++ I++ Sbjct: 320 PTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPIKQIEAVNKVIYDIVKETGEQAPPEIIV 379 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +NKID P L AEI + L E VSA G G D++ + + Sbjct: 380 INKIDQADP---LVLAEIRHVLDH-ENVVYVSAHTGEGIDELTSRI 421 >gi|160942349|ref|ZP_02089657.1| hypothetical protein CLOBOL_07234 [Clostridium bolteae ATCC BAA-613] gi|158434713|gb|EDP12480.1| hypothetical protein CLOBOL_07234 [Clostridium bolteae ATCC BAA-613] Length = 178 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 26/176 (14%) Query: 20 SRSGC----VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 SR G + LVG + AGK+TL G K++ HK Q + V + Sbjct: 4 SREGASMKKIMLVGRSGAGKTTLTQAMKGRKITY--HKTQYINNYD-----------VII 50 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DTPG + + + +I S+ ADIV L++ + + + ++ ++ + +I Sbjct: 51 DTPGEYAENKTLARALILYSY----EADIVGLLMSAIEDYSLYSPNI---VSMATREVIG 103 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 I+ +ID +PE + A + +L +K F VS+ G G D+LNYL PW Sbjct: 104 IVTQID--QPEARPDLATMWLELTGCKKIFYVSSVTGEGVGDILNYLREEGDTMPW 157 >gi|122702605|emb|CAL88492.1| GTPase [Helicobacter pylori] gi|242255882|gb|ACS88925.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLNL 168 >gi|317452847|emb|CBL87859.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLNL 168 >gi|311032250|ref|ZP_07710340.1| tRNA modification GTPase TrmE [Bacillus sp. m3-13] Length = 462 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 3/137 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR ++ VS + + +DT G Sbjct: 222 REGLSTVIIGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVSVRGVPLRLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++++ +L + L + A + +I+I+NK Sbjct: 282 IRETEDIVERIGVERSREVLKKADLILLVLNNNDDLTMEDKQLFE--AVKGMDVIVIVNK 339 Query: 140 IDCVKPERLLEQAEIAN 156 D + + E+AN Sbjct: 340 TDLPTKIDIGQVKELAN 356 >gi|308188770|ref|YP_003932901.1| tRNA modification GTPase [Pantoea vagans C9-1] gi|308059280|gb|ADO11452.1| tRNA modification GTPase [Pantoea vagans C9-1] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 7/105 (6%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D V+ +R G V + G NAGKS+L+N G +IVT TTR ++R + Sbjct: 201 DAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVLREHIH 260 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I+ AD V +VD Sbjct: 261 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG 305 >gi|292493916|ref|YP_003529355.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4] gi|291582511|gb|ADE16968.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L NR G + +IVT TTR ++R ++ I DT G+ ++ Sbjct: 227 VVLVGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLREHITIDGLPIRLSDTAGLHDSM 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + +R + +AD V L+ D L +L E+ S LILNKID Sbjct: 287 DIIEQEGMRRTREEFTNADHVLLIADDQVGLTELEQSILGELPDNVSH-TLILNKIDLSG 345 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E+ E + ++V +S G G D +L L Sbjct: 346 AS--AERREDSQRVV-----LRLSVLTGAGMDLLLQRL 376 >gi|282878065|ref|ZP_06286870.1| ribosome-associated GTPase EngA [Prevotella buccalis ATCC 35310] gi|281299805|gb|EFA92169.1| ribosome-associated GTPase EngA [Prevotella buccalis ATCC 35310] Length = 437 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR ++ +IV+ TTR G S + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + + R + AD+V +VD L D+ + + + +IL+ NK+D Sbjct: 65 DDVFEDAIRRQVIVATEEADLVLFMVDVKNGLTDWDADVAQILRRTKLPVILVGNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLNYLCSTLP 187 AE F +SA G G D+L+ + LP Sbjct: 123 ------NSAEYYTAAEFYRLGLGDPQCISAATGGGTGDLLDLVLEKLP 164 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+L+N F+G IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSLINAFIGEDRHIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRKSK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++D+ L++D+ R ++ ++ + I K L++++NK D Sbjct: 239 VSEDLEFYSVMRSIRSIENSDVCILMIDATRGIESQDMNIFQLIQKNHKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 >gi|255262204|ref|ZP_05341546.1| ribosome-associated GTPase EngA [Thalassiobium sp. R2A62] gi|255104539|gb|EET47213.1| ribosome-associated GTPase EngA [Thalassiobium sp. R2A62] Length = 495 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 7/161 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLADLRFTVIDTAGLEEA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKID 141 D S M +L+ + AD VCL + R + ++ +I +R+S++IL NK + Sbjct: 64 TDESLQGRMRKLTERAVDMAD-VCLFMIDARAGVLPADEVFADILRRRASKVILAANKGE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + + I + + + +SA G G ++L+ L Sbjct: 123 G----KAADAGVIEAYSLGLGEPLRLSAEHGEGMAELLSEL 159 >gi|256383901|gb|ACU78471.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. capri str. GM12] gi|256384732|gb|ACU79301.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. capri str. GM12] gi|296455373|gb|ADH21608.1| tRNA modification GTPase TrmE [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 452 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 5/103 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 NS A++G TN GKS+++N + +IVT TTR IV G ++ + + +DT Sbjct: 214 NSEGIKTAIIGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTA 273 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 GI D L I S + I AD+V VV+ K NI+D Sbjct: 274 GIRKTSDVVENLGILKSKNLINEADLVLFVVN-----KENIND 311 >gi|122702223|emb|CAL88302.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VV+ S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVNGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNLNP 170 >gi|269965284|ref|ZP_06179405.1| tRNA modification GTPase [Vibrio alginolyticus 40B] gi|269830085|gb|EEZ84313.1| tRNA modification GTPase [Vibrio alginolyticus 40B] Length = 453 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ I +W I AD V +VD + D+ + R + + +I NK D Sbjct: 278 DEVEKIGIERAWDEIAQADRVLFMVDGTTTDATDPKDIWPDFVDRLPDNIGITVIRNKAD 337 >gi|256370677|ref|YP_003108502.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri SMDSEM] gi|256009469|gb|ACU52829.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri SMDSEM] Length = 461 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 9/159 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 V+++G TN GKSTL N+ + + SIV++ TTR+ + + + F+DT GI N Sbjct: 223 VSIIGCTNVGKSTLFNKILKDERSIVSNIAGTTRNYIEENLIINGIKFRFIDTAGINNKT 282 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRE--LKVNIHDLLKEIAKRSSRLILILNKID 141 KD KL I+ ++ IK +D++ V D E + N+ L ++ K+ ++ +++NK D Sbjct: 283 KDYIEKLGIKKTYKNIKKSDLILYVFDCLNEEIIMKNLKSLQEKYPKK--KIFILINKYD 340 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +K + + F +SA G+G ++L+ Sbjct: 341 LIKKNKKKINLRNYQD----KDIFHISAKYGYGIKNLLD 375 >gi|238783044|ref|ZP_04627071.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970] gi|238716045|gb|EEQ08030.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970] Length = 482 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 247 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 306 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 307 DEVERIGIERAWNEIEQADRVLFMVDG 333 >gi|168183721|ref|ZP_02618385.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf] gi|237797100|ref|YP_002864652.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657] gi|182673145|gb|EDT85106.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf] gi|229263227|gb|ACQ54260.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657] Length = 461 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 9/128 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N + +IVT TTR ++ ++ I +DT G Sbjct: 221 REGLNTVIVGKPNVGKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILI 136 I +D K+ + S I AD+V ++D RE+ + I D +K + + I++ Sbjct: 281 IRETEDVVEKIGVEKSKEKIDEADLVIFMLDLSREIDEEDIEIMDFIK-----NKKYIVL 335 Query: 137 LNKIDCVK 144 LNK+D K Sbjct: 336 LNKLDLNK 343 >gi|153949187|ref|YP_001403100.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP 31758] gi|166991119|sp|A7FPC2|MNME_YERP3 RecName: Full=tRNA modification GTPase mnmE gi|152960682|gb|ABS48143.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP 31758] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHINGMPLHIIDTAGLREAN 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 279 DEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|329957356|ref|ZP_08297876.1| ribosome biogenesis GTPase Der [Bacteroides clarus YIT 12056] gi|328523069|gb|EGF50172.1| ribosome biogenesis GTPase Der [Bacteroides clarus YIT 12056] Length = 437 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN--- 82 A+VG NAGKS++VN F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++D + +IR S +I+++D+ L++D+ R ++ ++ I K S L++++NK D Sbjct: 239 VSEDLEYYSVIR-SIRSIENSDVCILMLDATRGIESQDLNIFSLIQKNSKGLVVVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 LVE 300 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 18/189 (9%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILIL 137 N+ D + + + + + AD++ VVD +L + + +L+ K ++L+ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVASILRRAKK---PVLLVA 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D E E + + + + +SA G G D+++ + +D+ Sbjct: 119 NKTD--NNELQYNAPEFYS--LGLGDPYCISAVTGSGTGDLMDLIVGNFK-----KESDE 169 Query: 198 I--SDLPMF 204 I D+P F Sbjct: 170 ILDEDIPRF 178 >gi|323702013|ref|ZP_08113682.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574] gi|323533099|gb|EGB22969.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574] Length = 409 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 7/156 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV-RGIVSEKESQIVFLDTPGIFNA 83 +A+ G NAGKS+L+N +++V++ TT V + + +V +DT GI + Sbjct: 15 IAIFGRRNAGKSSLINSLTNQDIAVVSNIAGTTTDPVYKSMEILPIGPVVIIDTAGIDDV 74 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L + S +K AD+V LV+D+ + + DL+KE +R ++ ++NKID Sbjct: 75 G-LLGELRVEKSKEVLKKADLVLLVIDAAEGITIYEQDLIKECQQRDLPVVTVINKID-- 131 Query: 144 KPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDV 178 + + ++A+ K VSA G G D+ Sbjct: 132 --QNSVTDNDLADYKNTLGTPVVAVSALTGQGVADL 165 >gi|261368861|ref|ZP_05981744.1| tRNA modification GTPase TrmE [Subdoligranulum variabile DSM 15176] gi|282569034|gb|EFB74569.1| tRNA modification GTPase TrmE [Subdoligranulum variabile DSM 15176] Length = 389 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 12/139 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CV L+G N GKSTL+N G +IVT TTR IV V E ++ DT G+ Sbjct: 226 CV-LLGRPNVGKSTLLNLLAGFDRAIVTPVAGTTRDIVEQAVQLGEIRLNLFDTAGVREV 284 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D+ IR SW + A +V V D+ + L+ + D+ + R + + ILNK Sbjct: 285 GADGDAIEAEGIRRSWKKLDEAGLVLAVFDAAQPLEESDLDIARRCQGRPA--LAILNKQ 342 Query: 141 DCVKPERLLEQAEIANKLV 159 D L E E A L+ Sbjct: 343 D------LAESTEAARDLL 355 >gi|122702461|emb|CAL88421.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLVDAVLDTLNL 168 >gi|50365015|ref|YP_053440.1| GTP-binding protein EngA [Mesoplasma florum L1] gi|81695689|sp|Q6F1R7|DER_MESFL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|50363571|gb|AAT75556.1| GTP-binding protein, cell cycle control [Mesoplasma florum L1] Length = 435 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 4/167 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + G VA+VG N GKS+L NR + K SIV TR + G + + +DT GI Sbjct: 2 KKGIVAIVGRPNVGKSSLFNRIIREKKSIVEDTPGVTRDRIYGTAEWLTREFIVIDTGGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + + ++ AD++ +++ L + K + K ++L +NK Sbjct: 62 TLEDQPFAKEIKVQAEIAMEEADVIVFLLNHQEGLSDEDKMIAKILYKTKKPIVLAVNKY 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D K +Q E + L F E ++SAT G G D+L+ + +P Sbjct: 122 D--KKTSDFDQYEYMS-LGFGE-PILISATHGIGTGDLLDDIIHQMP 164 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 17/142 (11%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H++ +DN V+++G N GKS+LVN +G + IV+ TT V +V + Sbjct: 166 HEEINKDNRTR--VSIIGRPNVGKSSLVNSLIGEERMIVSDIPGTTLDAVDSVVKVNNIE 223 Query: 72 IVFLDTPG------IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 +DT G IF + Y L S +TI +D+V L++D+ +L NI L Sbjct: 224 YTLIDTAGIRKKSKIFQNVEKYSYLR---SLTTINGSDVVLLMLDASVPISDLDTNIGGL 280 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K +I+I NK D V+ Sbjct: 281 AFEEKK---PIIIIANKWDLVE 299 >gi|119386828|ref|YP_917883.1| small GTP-binding protein [Paracoccus denitrificans PD1222] gi|119377423|gb|ABL72187.1| GTP-binding protein HflX [Paracoccus denitrificans PD1222] Length = 435 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 12/170 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + +++ DT G + Sbjct: 212 IVALVGYTNAGKSTLFNRLTGAEVLAQDQLFATLDPTMRQLTLPGGRRVILSDTVGFIS- 270 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIA-KRSSRLILI 136 D H+L+ R + + AD++ V D SH E + ++ ++L + + LI + Sbjct: 271 -DLPHELVAAFRATLEEVLAADLILHVRDISHPETEEQAGDVGEILDSLGVEEDVPLIEV 329 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + PE +A + + +SA G G D +L + + L Sbjct: 330 WNKIDALSPE---TRAALQRTDARTQGVQAISALSGEGLDTLLAAIEARL 376 >gi|315644290|ref|ZP_07897460.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453] gi|315280665|gb|EFU43954.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N +IVT TTR ++ V+ + LDT G Sbjct: 218 REGITTAIIGRPNVGKSSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + AD++ LV+++ L + +L+++I R + I+I+NK Sbjct: 278 IRETMDVVEQIGVERSKHAVNEADLILLVLNASEPLHQDELELMEQI--RGRQCIVIMNK 335 Query: 140 IDC 142 +D Sbjct: 336 MDL 338 >gi|332293385|ref|YP_004431994.1| tRNA modification GTPase TrmE [Krokinobacter diaphorus 4H-3-7-5] gi|332171471|gb|AEE20726.1| tRNA modification GTPase TrmE [Krokinobacter diaphorus 4H-3-7-5] Length = 462 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + +S F+DT GI Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELSIGGIGFRFIDTAGIRETV 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-----LILILNK 139 D L I+ ++ IK A +V L+ S E N EI K ++ L+++ NK Sbjct: 284 DVIEGLGIKKTFEKIKQAQVVILLF-SANEFLANGATFKTEIEKIKNKFPLKPLVIVANK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +D V + EI+N+ I ++SA + G D++ Sbjct: 343 VDQVSESDV---KEISNQ---IPNLHLLSAKENKGVDEL 375 >gi|150024725|ref|YP_001295551.1| tRNA modification GTPase TrmE [Flavobacterium psychrophilum JIP02/86] gi|205829151|sp|A6GXB2|MNME_FLAPJ RecName: Full=tRNA modification GTPase mnmE gi|149771266|emb|CAL42735.1| tRNA modification GTPase TrmE [Flavobacterium psychrophilum JIP02/86] Length = 462 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 14/166 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + + F+DT GI K Sbjct: 224 VAIVGEPNVGKSTLLNTLLNEERAIVSEIAGTTRDTIEDELVIGGIGFRFIDTAGIRETK 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR------ELKVNIHDLLKEIAKRSSRLILILN 138 D + I+ ++ I+ + +V + DS +LKV + + + + LI+I N Sbjct: 284 DVVESIGIKKTFEKIEQSQVVVFLFDSSEFKISGLKLKVALEKIKNQFPLKP--LIIIGN 341 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 K D L + EI N I + ++SA + G +D+ N L S Sbjct: 342 KSDK------LSETEIQNIKTEIPEILLISAKEKLGVEDLKNQLLS 381 >gi|197120417|ref|YP_002140844.1| tRNA modification GTPase TrmE [Geobacter bemidjiensis Bem] gi|197089777|gb|ACH41048.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34) modification GTPase [Geobacter bemidjiensis Bem] Length = 455 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N GKS+L+N + K +IVT TTR ++ +V+ + LDT GI + Sbjct: 222 SVVIAGKPNVGKSSLLNTLLKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRES 281 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D + +RLS I AD+V V+D +L+ I +S I++ NK D Sbjct: 282 EDQVEQEGVRLSLDRIPKADLVLFVIDGSSAFGDEDAAILEAIGSKSC--IVVRNKSD 337 >gi|122700661|emb|CAL87919.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER+ + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERIYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|119944927|ref|YP_942607.1| GTP-binding protein EngA [Psychromonas ingrahamii 37] gi|166225845|sp|A1SU43|DER_PSYIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119863531|gb|ABM03008.1| small GTP-binding protein [Psychromonas ingrahamii 37] Length = 489 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKIDEHEFIVIDTGGITGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ LM S I AD V +VD+ + + + + K+ ++ ++ NK D V Sbjct: 64 EEGIDALMAGQSLLAIDEADAVLFLVDARAGMTIADEAIADHLRKQDKKVFVVANKTDGV 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+G N GKSTL NR +G + +V TTR + +S + + + +DT G+ K Sbjct: 203 LALIGRPNVGKSTLTNRILGEERVLVYDLPGTTRDSIYIPMSRDDREYILIDTAGVRKRK 262 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ ++V L++D+ + LL L++ +NK D Sbjct: 263 KVNETVEKFSVIKTLQAIEDCNVVLLIIDARDGISDQDLSLLGFTLNAGRSLVIAVNKWD 322 Query: 142 CV---KPERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + ER+ ++E+ +L FI+ K +SA G G Sbjct: 323 GMTEYDKERV--KSELDRRLGFIDFAKIHFISALHGTGV 359 >gi|94994338|ref|YP_602436.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10750] gi|166234825|sp|Q1J6U1|MNME_STRPF RecName: Full=tRNA modification GTPase mnmE gi|94547846|gb|ABF37892.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS10750] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLN-LSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|86148233|ref|ZP_01066530.1| GTP-binding protein HflX [Vibrio sp. MED222] gi|218708324|ref|YP_002415945.1| putative GTPase HflX [Vibrio splendidus LGP32] gi|85834003|gb|EAQ52164.1| GTP-binding protein HflX [Vibrio sp. MED222] gi|218321343|emb|CAV17293.1| GTP-binding protein HflX [Vibrio splendidus LGP32] Length = 435 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 12/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 200 ISLVGYTNAGKSTLFNRITSAGVYAADQLFATLDPTLRKIDLADVGPAILADTVGFIRHL 259 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + ADI+ VVD+ RE +H++L+EI ++++NKI Sbjct: 260 PHDLVAAFKATLQETQEADILLHVVDASDDRFRENIQAVHEVLEEIDAHEVPTLVVMNKI 319 Query: 141 DCVKPE--RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 DC++ + R+ E A + V+ VSA +G G + + L L Sbjct: 320 DCMEDQKPRIERDEEGAPRAVW------VSAMEGEGIELLFEALTERL 361 >gi|294055629|ref|YP_003549287.1| tRNA modification GTPase TrmE [Coraliomargarita akajimensis DSM 45221] gi|293614962|gb|ADE55117.1| tRNA modification GTPase TrmE [Coraliomargarita akajimensis DSM 45221] Length = 453 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N G + +IV+ TTR + + +I LDT G+ A D+ Sbjct: 222 IVGEPNVGKSSLINALTGTERAIVSDVPGTTRDFISSFLMLGPWRIEILDTAGLHEAGDA 281 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ I+ + + AD +VVD+ + +LL+ ++ +++ ++++NK D PE Sbjct: 282 IEQIGIQHTIEQAETADFFLVVVDATQPSPTLPVELLERLSSKNA--LVLVNKTDLASPE 339 >gi|292559009|gb|ADE32010.1| Small GTP-binding domain containing protein [Streptococcus suis GZ1] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL++NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVV-SGKEGVTDADEYVSRILYKTNKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + + + + + + VS+ G G DVL+ + LP Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIIENLP 164 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I+ +D++ +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIERSDVILMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|122701487|emb|CAL88133.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 19/171 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ AK Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--AK 67 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILN 138 D+ I+ L+ + +D++ VVD S +LK L +E+ K + L++N Sbjct: 68 DALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVIN 122 Query: 139 KIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID K ER + + K+F +SA+ G +++ + + L L Sbjct: 123 KIDNDKEKERAYAFSSFG-----MPKSFNISASHNRGISALIDAILNALNL 168 >gi|71903433|ref|YP_280236.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS6180] gi|123639929|sp|Q48TS5|MNME_STRPM RecName: Full=tRNA modification GTPase mnmE gi|71802528|gb|AAX71881.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS6180] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLN-LSQGSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|330997747|ref|ZP_08321586.1| ribosome biogenesis GTPase Der [Paraprevotella xylaniphila YIT 11841] gi|329569846|gb|EGG51604.1| ribosome biogenesis GTPase Der [Paraprevotella xylaniphila YIT 11841] Length = 437 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR + +IV+ + TTR G + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRHAIVSDEAGTTRDRQYGKSEWTGCEFSVIDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 D + + + + + AD+V +VD R ++ + + I +R+ + +IL+ NK D Sbjct: 65 DDIFEEEIRKQVTLATEEADVVLFLVDV-RNGVTDLDEAVANILRRTKKPVILVANKADT 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + AE + + + +SA G G ++L+ + S P Sbjct: 124 --NEWIYSAAEFY--ALGLGDPYCISAATGSGTGELLDQIVSKFP 164 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+L+N F+G + +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNVGKSSLINAFIGEERNIVTDIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRKNK 238 Query: 86 -----SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y+ +M S I+++D+ L++D+ R ++ ++ + I + + L++++NK Sbjct: 239 VTEDLEYYSVM--RSIRAIENSDVCILMLDAERGIEAQDLNIFQLIQRNNKSLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 >gi|260910017|ref|ZP_05916700.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 472 str. F0295] gi|260635847|gb|EEX53854.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 472 str. F0295] Length = 437 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 13/170 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKCDWSGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILI 136 N+ D + + R + AD+V +VD + + DL +++A+ R ++L+ Sbjct: 62 VNSDDIFEDAIRRQVLVATEEADLVLFLVD----VNTGVTDLDEDVAQILRRTKVPVLLV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +NK D E++ E + + + F +SA G G D+L+ + L Sbjct: 118 VNKAD--NNEQIYEAPVFYS--LGLGDPFPISAATGSGTGDLLDAVIEKL 163 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+H+D+ L++D+ R ++ ++ + I K L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRSIEHSDVCILMIDATRGIEAQDMNIFQLIQKNQKSLVVVVNKWDL 298 Query: 143 V 143 V Sbjct: 299 V 299 >gi|159043715|ref|YP_001532509.1| GTP-binding protein EngA [Dinoroseobacter shibae DFL 12] gi|189037146|sp|A8LHW1|DER_DINSH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157911475|gb|ABV92908.1| small GTP-binding protein [Dinoroseobacter shibae DFL 12] Length = 490 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 7/161 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEEA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKID 141 DS M RL+ + AD CL + R ++ +I +RS+ +L+ NK + Sbjct: 64 TDDSLQGRMRRLTERAVSMAD-ACLFLIDARVGVTPTDEVFADILRRSNAHVLLGANKAE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R E I + + + +SA G G ++ L Sbjct: 123 G----RAAEAGLIEAYALGLGEPLALSAEHGEGMAELTGAL 159 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + TR + + + DT G+ Sbjct: 205 VAVVGRPNAGKSTLINQLLGEDRLLTGPEAGITRDAISLAMDWDGLPVRIFDTAGMRKKA 264 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R ++I +NK Sbjct: 265 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDAG--IPFEQQDLRIADLAEREGRAVVIAVNK 322 Query: 140 IDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD 176 D K +L E E +L+ + VSA G G D Sbjct: 323 WDMEDDKQGKLKELKEAFERLLPQLRGAPLVTVSAKTGRGMD 364 >gi|299772120|ref|YP_003734146.1| tRNA modification GTPase TrmE [Acinetobacter sp. DR1] gi|298702208|gb|ADI92773.1| tRNA modification GTPase TrmE [Acinetobacter sp. DR1] Length = 451 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 12/136 (8%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 203 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 263 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 322 Query: 126 IAKRSSRLILILNKID 141 I R RL+LI NK D Sbjct: 323 IEPR--RLMLIGNKCD 336 >gi|291279462|ref|YP_003496297.1| small GTP-binding protein [Deferribacter desulfuricans SSM1] gi|290754164|dbj|BAI80541.1| small GTP-binding protein [Deferribacter desulfuricans SSM1] Length = 438 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V ++G N GKSTL NR G +++IV TR + I + + +DT G Sbjct: 3 TVGIIGRPNVGKSTLFNRLAGKRIAIVDDMPGVTRDRLEYIAEWEGKKFKIVDTCGYDLR 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ K MI+ ++++ AD L+VD+ L + + +R + I++ NK+D Sbjct: 63 EELLKKEMIKQFYASLDEADFFVLLVDAKEGLHPLDEMVCNILREREKKFIVVANKVDN- 121 Query: 144 KPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLN 180 E+L Q+ +A+ + +E+ +SAT G D +L+ Sbjct: 122 --EKL--QSFVADFYQLGVEEIIPISATHGKNVDILLD 155 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 7/144 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 V +VG N GKS+L+N ++G + IVT TTR V + +DT GI Sbjct: 176 VVVVGRPNVGKSSLINSWLGDERLIVTPIPGTTRDSVDTYFEYNSKKYTLIDTAGIRKKS 235 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 KD K S+ I+ ADI ++D+ + ++ + + ++L +NK Sbjct: 236 VMFKDKIEKYGFYRSYDAIRRADIAVGLIDATEGVTERDVKVIADAYEAGRPVVLAINKW 295 Query: 141 DCV-KPERLLE--QAEIANKLVFI 161 D + K E++ + + EIA K F+ Sbjct: 296 DAINKDEKVGKKFKEEIAEKFKFL 319 >gi|238921035|ref|YP_002934550.1| GTP-binding protein EngA [Edwardsiella ictaluri 93-146] gi|259645874|sp|C5BES7|DER_EDWI9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238870604|gb|ACR70315.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 494 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 209 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + + LL I L++++NK D Sbjct: 269 KVTDTVEKFSVIKTLQAIEDANVVLLVIDARQGISDQDLSLLGFILNSGRSLVVVVNKWD 328 Query: 142 CVK---PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + E++ + ++ V + +SA G G ++ Sbjct: 329 GLSLEVKEQVKDMLDLRLGFVDFARIHFISALHGSGVGNLF 369 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 53/123 (43%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 ENGVETHMAEQSLMAIEEADIVLFLVDARDGLLPADEAIARHLRSRDKATFLVANKTDGI 123 Query: 144 KPE 146 E Sbjct: 124 DAE 126 >gi|256375751|ref|YP_003099411.1| GTP-binding protein EngA [Actinosynnema mirum DSM 43827] gi|255920054|gb|ACU35565.1| small GTP-binding protein [Actinosynnema mirum DSM 43827] Length = 471 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 7/186 (3%) Query: 7 TFFNEHKDFVQDNSRSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 T F++ + + + + V A+VG N GKSTLVNR +G + ++V TR V Sbjct: 15 TAFDDESEGADEATPAQPVLAIVGRPNVGKSTLVNRIIGRREAVVQDVPGVTRDRVAYDA 74 Query: 66 SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 + +DT G + + ++ AD V LVVD+ + K Sbjct: 75 LWNGRKFTVVDTGGWEPDATGMMASVAAQAELAMQTADAVLLVVDASVGATTTDEAVAKV 134 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCS 184 + + + ++L+ NK+D ERL+ AE+A+ + + VS G G DVL+ + Sbjct: 135 LRRSKAPVLLVANKVDD---ERLM--AEVASLWSLGLGEPMPVSGLHGRGSGDVLDKILE 189 Query: 185 TLPLAP 190 LP P Sbjct: 190 VLPETP 195 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 7/128 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+NR G S+V TT V +V + F+DT G+ Sbjct: 209 VALVGRPNVGKSSLLNRLTGENRSVVDSVAGTTVDPVDSLVELDDEVWRFVDTAGLRKRV 268 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 F + Y+ + + + I+ A++ +++D+ + +L + + +L NK Sbjct: 269 NFASGAEYYASL--RTKAAIESAEVAVVLLDAGEPISEQDLRVLTMVVESGRACVLAFNK 326 Query: 140 IDCVKPER 147 D V +R Sbjct: 327 WDLVDEDR 334 >gi|226328000|ref|ZP_03803518.1| hypothetical protein PROPEN_01891 [Proteus penneri ATCC 35198] gi|225203704|gb|EEG86058.1| hypothetical protein PROPEN_01891 [Proteus penneri ATCC 35198] Length = 343 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + + +DT G+ Sbjct: 58 LAIVGRPNVGKSTLTNRMLGEDRVVVYDMPGTTRDSIYIPMERDDKDYIIIDTAGVRKRG 117 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K++ K + + I+ A++ LV+D+ + LL I L++ +NK D Sbjct: 118 KVKETVEKFSVIKTLQAIEDANVALLVIDAREGISDQDLSLLGYILNAGRSLVIAVNKWD 177 Query: 142 CV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + +R +A + KL F++ + +SA G G ++ Y+C+T Sbjct: 178 GMTQDDREQVKAMLDLKLGFVDFARVHFISALHGSGVGNLFESIQEAYVCAT 229 >gi|71277760|ref|YP_271687.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H] gi|123630481|sp|Q47U36|MNME_COLP3 RecName: Full=tRNA modification GTPase mnmE gi|71143500|gb|AAZ23973.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H] Length = 471 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 8/126 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++ + + +DT G+ ++ Sbjct: 226 VVIAGRPNAGKSSLLNALSGKQTAIVTDIAGTTRDVLAEQIHIDGMPLHIIDTAGLRDSD 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV-----NIHDLLKE-IAKRSSR--LILI 136 D K+ I +W I AD V L+VD+ + + +I D E AK + L LI Sbjct: 286 DVVEKIGIERAWQEINQADRVLLMVDASEDHSILEDDQDIKDFYPEFFAKLPEKIGLTLI 345 Query: 137 LNKIDC 142 NK D Sbjct: 346 RNKADV 351 >gi|293611390|ref|ZP_06693686.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826262|gb|EFF84631.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 206 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 266 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 325 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 I R RL+LI NK D + AEI++ F + VSA + G +++ + + Sbjct: 326 IEPR--RLMLIGNKCDLTG-----QLAEISDFQGF--RHITVSAKQEMGVQGLVDAITAH 376 Query: 186 LPLAP 190 P Sbjct: 377 AGFHP 381 >gi|253681274|ref|ZP_04862072.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873] gi|253562512|gb|EES91963.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873] Length = 459 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 7/150 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+++N + +IVT TTR ++ +S + I +DT GI D Sbjct: 228 IVGKPNVGKSSILNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDI 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + S I ++D+ LV+DS REL +++ I + + I++LNKID + Sbjct: 288 VEKIGVEKSREKILNSDLTVLVLDSSRELDAEDKEIIDFI--KDKKYIVLLNKIDL---D 342 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 L++ + NKL + +SA G G D Sbjct: 343 TKLDKGSL-NKLNS-DYIIDISAKTGKGLD 370 >gi|238753998|ref|ZP_04615357.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473] gi|238707750|gb|EEQ00109.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 279 DEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|29654548|ref|NP_820240.1| GTP-binding protein EngA [Coxiella burnetii RSA 493] gi|153208833|ref|ZP_01947057.1| GTP-binding protein EngA [Coxiella burnetii 'MSU Goat Q177'] gi|154706295|ref|YP_001424682.1| GTP-binding protein EngA [Coxiella burnetii Dugway 5J108-111] gi|161830868|ref|YP_001597096.1| GTP-binding protein EngA [Coxiella burnetii RSA 331] gi|165921454|ref|ZP_02219642.1| GTP-binding protein EngA [Coxiella burnetii RSA 334] gi|212218660|ref|YP_002305447.1| GTP-binding protein EngA [Coxiella burnetii CbuK_Q154] gi|41017032|sp|Q83C83|DER_COXBU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037144|sp|A9KFU3|DER_COXBN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037145|sp|A9NDV6|DER_COXBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058971|sp|B6J7Q3|DER_COXB1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29541815|gb|AAO90754.1| GTP-binding protein [Coxiella burnetii RSA 493] gi|120575684|gb|EAX32308.1| GTP-binding protein EngA [Coxiella burnetii 'MSU Goat Q177'] gi|154355581|gb|ABS77043.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161762735|gb|ABX78377.1| GTP-binding protein EngA [Coxiella burnetii RSA 331] gi|165916769|gb|EDR35373.1| GTP-binding protein EngA [Coxiella burnetii RSA 334] gi|212012922|gb|ACJ20302.1| GTP-binding protein [Coxiella burnetii CbuK_Q154] Length = 443 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL+NR +G + IV + TTR + + + +DT GI Sbjct: 178 IAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIRRRA 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D K + S + AD+V ++D+ + + LL I + LI+ +NK D Sbjct: 238 KIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVTEQDLRLLNRIVEAGVSLIIAVNKWD 297 Query: 142 CVK-PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + ER + I ++ F++ + + +SA G G Sbjct: 298 GLNIEERDNVRNAIDRRMPFVDFARRYFISALHGTGV 334 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL N ++ ++V TR G + +++ +DT G+ Sbjct: 4 VIAIVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGLV-- 61 Query: 84 KDSYHKLMIRLSWSTIKHA----DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 D+ +K + L+ + ++ A D + +VD+ L + + + K+ ++ L +NK Sbjct: 62 -DTENKEVAPLAETQVEQAIDESDCILFLVDAKAGLVPADEIIAERLRKKGKKIFLAVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + + Q++ KL F E ++++A G G D++ + LP Sbjct: 121 ADRARAA--VVQSDFY-KLGFGE-PYVIAAASGRGVKDLMTQVLENLP 164 >gi|325265449|ref|ZP_08132172.1| tRNA modification GTPase TrmE [Clostridium sp. D5] gi|324029307|gb|EGB90599.1| tRNA modification GTPase TrmE [Clostridium sp. D5] Length = 470 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKS+L+N G + +IVT TTR + + + +DT GI D Sbjct: 223 IAGKPNAGKSSLLNVLAGRERAIVTDIEGTTRDALEEQIQLNGLTLNMVDTAGIRETDDI 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + +K+AD++ V D+ R L N D+++ A + + I++LNK D Sbjct: 283 IEKMGVDKARDYVKNADLIIYVADASRPLDKNDEDIIRLTAGK--KCIILLNKSD 335 >gi|302335736|ref|YP_003800943.1| GTP-binding protein HflX [Olsenella uli DSM 7084] gi|301319576|gb|ADK68063.1| GTP-binding protein HflX [Olsenella uli DSM 7084] Length = 432 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 14/177 (7%) Query: 11 EHKDFVQDNSR--SGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 E + VQ +R SG VAL G TNAGKSTL+NR GA + T R +V Sbjct: 194 EGRRKVQSKARWDSGVFRVALAGYTNAGKSTLLNRLTGAGAYVKDELFATLDPTTRSMVL 253 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDL 122 + ++ DT G + + + + + AD+V LV D+ R+ + + Sbjct: 254 DAGRKVTVTDTVGFIQKLPTTLVESFKSTLAEVMAADLVLLVADASDGNVRKEIAAVRRI 313 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 L +I+ + +++ NKID L+ E+A +SA G G +L Sbjct: 314 LGDISASETPTVVVFNKIDA------LDDEELALLRTGAPDAVPISALTGRGIPGLL 364 >gi|166362822|ref|YP_001655095.1| GTP-binding protein EngA [Microcystis aeruginosa NIES-843] gi|189037151|sp|B0JFL6|DER_MICAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166085195|dbj|BAF99902.1| GTP binding protein [Microcystis aeruginosa NIES-843] Length = 452 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 8/169 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPG-I 80 VA++G N GKSTLVNR G + +IV + T R+ +++ QIV DT G + Sbjct: 5 VVAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQIV--DTGGLV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 FN + L+ + + A + VVD + ++ + +++ ++L +NK Sbjct: 63 FNDDSEFLPLIREQALIALAEASVAIFVVDGQGGITAGDREIAAWLRQQNVPILLAVNKC 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + V+ + +L+ E + I + F +SA G G ++L+ + LP A Sbjct: 123 ESVE-QGILQATEFWE--LAIGEPFPISAIHGSGTGELLDAVIKYLPPA 168 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-FLDTPGIFNA 83 VA++G N GKS+L+N G + +IV+ TTR + ++ E+E Q+ +DT GI Sbjct: 179 VAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDSIDTLI-EREGQVYRLIDTAGIRRK 237 Query: 84 KDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ + I ++ I+ +D+V V+D + L I + ++L++NK Sbjct: 238 KNVDYGAEFFSINRAFKAIRRSDVVLFVIDVLDGVTEQDLKLAGRIIEEGRAVVLVVNKW 297 Query: 141 DCVK 144 D V+ Sbjct: 298 DAVE 301 >gi|319956402|ref|YP_004167665.1| ribosome-associated GTPase enga [Nitratifractor salsuginis DSM 16511] gi|319418806|gb|ADV45916.1| ribosome-associated GTPase EngA [Nitratifractor salsuginis DSM 16511] Length = 462 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 9/168 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 VA++G N GKS+L NR + +I + TTR I + IV+ ++ + LDT GI + Sbjct: 4 VAILGRPNVGKSSLFNRLARKRDAITSDVSGTTRDIKKNIVTISEDREFELLDTGGI-DE 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D+ + +S K AD++ +VD + L E+ + LI+NKID Sbjct: 63 SDALFSKVAEMSKRAAKEADVILYMVDGKKLPDEEDKKLFYELQALDKPIALIVNKIDND 122 Query: 144 KP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 K ER E E E F +S + + + +L +P A Sbjct: 123 KEEQERFWEFIEFG-----AENVFPISVSHNRKLNPLYKWLERYIPPA 165 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 ++ R VA++G N GKS+L+N +G + S+V+ TT V + + +I F+D Sbjct: 192 EEEDRKIKVAILGRPNVGKSSLLNALLGEERSVVSEVAGTTIDPVDETIIHGDYEITFVD 251 Query: 77 TPGIFNAKD--SYHKLMIRLSWSTIKHADIVCLVVDS 111 T GI K + + ++ ADI L++D+ Sbjct: 252 TAGIRRRSKILGIEKYALGRTEKMLQEADIALLLIDA 288 >gi|146319380|ref|YP_001199092.1| GTP-binding protein EngA [Streptococcus suis 05ZYH33] gi|146321585|ref|YP_001201296.1| GTP-binding protein EngA [Streptococcus suis 98HAH33] gi|253752406|ref|YP_003025547.1| GTP-binding protein EngA [Streptococcus suis SC84] gi|253754232|ref|YP_003027373.1| GTP-binding protein EngA [Streptococcus suis P1/7] gi|253756166|ref|YP_003029306.1| GTP-binding protein EngA [Streptococcus suis BM407] gi|166225866|sp|A4W3F7|DER_STRS2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225868|sp|A4VX53|DER_STRSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145690186|gb|ABP90692.1| Predicted GTPase [Streptococcus suis 05ZYH33] gi|145692391|gb|ABP92896.1| Predicted GTPase [Streptococcus suis 98HAH33] gi|251816695|emb|CAZ52336.1| GTP-binding protein EngA [Streptococcus suis SC84] gi|251818630|emb|CAZ56464.1| GTP-binding protein EngA [Streptococcus suis BM407] gi|251820478|emb|CAR47214.1| GTP-binding protein EngA [Streptococcus suis P1/7] gi|319758811|gb|ADV70753.1| GTP-binding protein EngA [Streptococcus suis JS14] Length = 436 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL++NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVV-SGKEGVTDADEYVSRILYKTNKPVILVVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + + + + + + VS+ G G DVL+ + LP Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPVSSVHGIGTGDVLDAIIENLP 164 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I+ +D++ +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIERSDVILMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|124025156|ref|YP_001014272.1| GTP-binding protein EngA [Prochlorococcus marinus str. NATL1A] gi|166225837|sp|A2C0J7|DER_PROM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123960224|gb|ABM75007.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. NATL1A] Length = 456 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 12/182 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G +++ ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCQSREAIVHDEPGVTRDRTYQDGFWRDRDFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + ++ A + ++VD + + + + RS + ++++NK Sbjct: 64 DDDSEFLPEIREQANLALEEAVVALVIVDGQEGITTADESIAEFLRSRSCKTLVVVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 C PE+ L A KL E + +SA G G D+L+ + + P D++SD Sbjct: 122 CESPEQGLAMAAEFWKLGLGEP-YPISAIHGVGTGDLLDQVVNLFP----SKDLDEVSDS 176 Query: 202 PM 203 P+ Sbjct: 177 PV 178 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N G +IV+ TTR + ++ + + +DT GI + Sbjct: 180 LAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTIDTRITHQGKEWKLVDTAGIRRRR 239 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I S+ I+ +D+ LV+D+ + L I + ++++NK D Sbjct: 240 SVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEQEGRACLIVINKWD 299 Query: 142 CVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHGCDDVL 179 V+ + A +I +KL F++ M+ SA G + + Sbjct: 300 AVEKDSHTMSAMEKDIRSKLYFLDWAQMIFTSAVTGQRVEGIF 342 >gi|218931079|ref|YP_002348954.1| tRNA modification GTPase TrmE [Yersinia pestis CO92] gi|21363009|sp|Q8Z9U2|MNME_YERPE RecName: Full=tRNA modification GTPase mnmE gi|115349690|emb|CAL22671.1| putative thiophene and furan oxidation protein [Yersinia pestis CO92] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 279 DEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|332295774|ref|YP_004437697.1| GTP-binding proten HflX [Thermodesulfobium narugense DSM 14796] gi|332178877|gb|AEE14566.1| GTP-binding proten HflX [Thermodesulfobium narugense DSM 14796] Length = 418 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 19/165 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL-DTPGIFNA 83 ++LVG TNAGKSTL+N + V +V ++ +T I+ + VFL DT G Sbjct: 198 ISLVGYTNAGKSTLMNVLTNSTV-LVRDQLFSTLDTKTAIIKFNDDTKVFLTDTVGFI-- 254 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV------NIHDLLKEIAKRSSRLIL 135 + H+L+ + + S I ++ + VVD+ + +++ +++++LKEI IL Sbjct: 255 RKLPHRLIEAFKATLSQISESNFLLHVVDASKPIEIIKQDIKSVNEVLKEINSNDIPSIL 314 Query: 136 ILNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + NKID C + E AE+ FI SA G+G D +L Sbjct: 315 VFNKIDKCTNLTNVHELAELYKPYCFI------SAITGYGIDKLL 353 >gi|242255822|gb|ACS88895.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER+ + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERVYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|183597177|ref|ZP_02958670.1| hypothetical protein PROSTU_00420 [Providencia stuartii ATCC 25827] gi|188023491|gb|EDU61531.1| hypothetical protein PROSTU_00420 [Providencia stuartii ATCC 25827] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V ++DS Sbjct: 279 DEVERIGIERAWKEIEQADRVLFMLDS 305 >gi|303236880|ref|ZP_07323459.1| ribosome-associated GTPase EngA [Prevotella disiens FB035-09AN] gi|302483048|gb|EFL46064.1| ribosome-associated GTPase EngA [Prevotella disiens FB035-09AN] Length = 437 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+L+N F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSLINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++D+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRSIENSDVCILMIDATRGIEAQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR ++ +IV+ TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRL--ILI 136 N+ D + + + + AD V +VD+ + I D +++A+ R S+L IL+ Sbjct: 62 VNSDDIFEDAIRKQVLVATEEADFVLFLVDN----ETGITDWDEDVAQILRRSKLPVILV 117 Query: 137 LNKID 141 NK+D Sbjct: 118 ANKVD 122 >gi|304318133|ref|YP_003853278.1| tRNA modification GTPase TrmE [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779635|gb|ADL70194.1| tRNA modification GTPase TrmE [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 458 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 7/154 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + +IVT TTR I+ ++ K I +DT GI + + Sbjct: 227 IIGKPNVGKSSLLNALLNENRAIVTDIPGTTRDIIEEYLNIKGIPIKLIDTAGIRDTDEL 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + S I AD++ V D+ R L+ +++L+ I ++ ++ +LNKID Sbjct: 287 VEKIGVERSKEAINKADLIIFVFDNSRPLEKEDYEILRIIDDKN--VLYVLNKIDLPSMI 344 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 L E I+N E +S+ G D + N Sbjct: 345 DLDEIRRISN-----ENYISLSSVTKEGFDALEN 373 >gi|212212370|ref|YP_002303306.1| GTP-binding protein EngA [Coxiella burnetii CbuG_Q212] gi|238058972|sp|B6IZN3|DER_COXB2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|212010780|gb|ACJ18161.1| GTP-binding protein [Coxiella burnetii CbuG_Q212] Length = 443 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL+NR +G + IV + TTR + + + +DT GI Sbjct: 178 IAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIRRRA 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D K + S + AD+V ++D+ + + LL I + LI+ +NK D Sbjct: 238 KIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVTEQDLRLLNRIVEAGVSLIIAVNKWD 297 Query: 142 CVK-PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + ER + I ++ F++ + + +SA G G Sbjct: 298 GLNIEERDNVRNAIDRRMPFVDFARRYFISALHGTGV 334 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL N ++ ++V TR G + +++ +DT G+ Sbjct: 4 VIAIVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGLV-- 61 Query: 84 KDSYHKLMIRLSWSTIKHA----DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 D+ +K + L+ + ++ A D + +VD+ L + + + K+ ++ L +NK Sbjct: 62 -DTENKEVAPLAETQVEQAIDESDCILFLVDAKAGLVPADEIIAERLHKKGKKIFLAVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + + Q++ KL F E ++++A G G D++ + LP Sbjct: 121 ADRARAA--VVQSDFY-KLGFGE-PYVIAAASGRGVKDLMTQVLENLP 164 >gi|160892719|ref|ZP_02073509.1| hypothetical protein CLOL250_00249 [Clostridium sp. L2-50] gi|156865760|gb|EDO59191.1| hypothetical protein CLOL250_00249 [Clostridium sp. L2-50] Length = 440 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N G K+SIV TR + VS + +DT GI Sbjct: 5 IVAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVSWLDYNFTIIDTGGIEPE 64 Query: 84 KDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ K M + I+ AD++ + D + L + H +++ + K +IL++NK+D Sbjct: 65 SDNIILKSMREQAEIAIETADVIIFMTDVRQGLVDDDHKVVQMLRKSKKPVILVVNKVDS 124 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 17/180 (9%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 ++ F+E +++ R +A++G N GKS+++N+ +G IV+ TTR + + Sbjct: 162 VSHFDEDSKNEEEDDRP-RIAIIGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAIDTEI 220 Query: 66 SEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 ++ VF+DT G+ K+ + I + S ++ ++ LV+D+ + D Sbjct: 221 VRNGTEYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERCNVAVLVIDATE----GVTDQ 276 Query: 123 LKEIA----KRSSRLILILNKIDCV-KPERLLEQ--AEIANKLVFI--EKTFMVSATKGH 173 +IA +R +I+++NK D V K ++ + + EI KL ++ + VSA G Sbjct: 277 DAKIAGIAHERGKGMIIVVNKWDAVEKDDKTIYKFTKEIREKLSYMPYAELLFVSAATGQ 336 >gi|303240051|ref|ZP_07326572.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2] gi|302592320|gb|EFL62047.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2] Length = 460 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 6/139 (4%) Query: 21 RSGCVA-LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A +VG N GKS+L+N G +IVT TTR I+ ++ + +DT G Sbjct: 220 REGINAVIVGRPNVGKSSLLNELTGKSRAIVTDIPGTTRDIIEDYINLNGVPVRIIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + + + AD++ +++D+ + + D+L + + I+ILNK Sbjct: 280 IRETEDVVEKIGVEKTHKEVDSADLIIMMIDADQGVNQEDIDILN--KIKEKKAIIILNK 337 Query: 140 IDCVKPERLLEQAEIANKL 158 ID V +++L +I NKL Sbjct: 338 IDMVSEDKIL---DIENKL 353 >gi|300717947|ref|YP_003742750.1| GTP-binding protein [Erwinia billingiae Eb661] gi|299063783|emb|CAX60903.1| GTP-binding protein [Erwinia billingiae Eb661] Length = 495 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + + + +DT G+ Sbjct: 211 LAIVGRPNVGKSTLTNRILGEDRVVVFDAPGTTRDSIYIPMERDGREYILIDTAGVRKRG 270 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 271 KVTETVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 330 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E E E + +L FI+ + +SA G G ++ Y CST Sbjct: 331 GLSQEVRDEVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVTEAYDCST 382 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + Q + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGQQFICIDTGGIDGN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + + + R L+ NK D + Sbjct: 64 EEGVETRMAAQSLLAIEEADVVLFMVDARAGLMPADIAIAQHLRSREKPTFLVANKTDGL 123 Query: 144 KPE 146 P+ Sbjct: 124 DPD 126 >gi|292806410|gb|ADE42335.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILSTLNL 168 >gi|288918466|ref|ZP_06412817.1| small GTP-binding protein [Frankia sp. EUN1f] gi|288350106|gb|EFC84332.1| small GTP-binding protein [Frankia sp. EUN1f] Length = 466 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 31 VLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVAYDAVWNGRRFTVVDTGGWEPD 90 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + + + AD V V+D+ V D + +A+ RS R +IL NK Sbjct: 91 ARGLAARVAEQARAALDTADGVLFVIDT----TVGATDADEAVARVLHRSGRPVILAANK 146 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +D + E + A + + + + + + VSA G G D+L+ + + LP AP Sbjct: 147 VDDARTE--ADAAALWS--LGLGEPYPVSALHGRGSGDLLDAVLAVLPEAP 193 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VAL+G N GKS+L+N+ VGA+ S+V TTR V +V+ +F+DT G+ Sbjct: 206 VALIGRPNVGKSSLLNKIVGAERSLVHDVAGTTRDPVDELVTVGGETWMFIDTAGLRRRV 265 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A + + +R + S ++ A++ +++ + + ++ + + L+L NK Sbjct: 266 KEASGAEYYSSLRTA-SALEAAEVAIVLLAADEPITEQDQRIISMVTEAGRALVLAFNKW 324 Query: 141 DCVKPERLLE-QAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D + ER L+ + EI L V +SA G D + L ++L Sbjct: 325 DLLDTERRLDLEQEIVRDLGRVAWAPRVNISARTGRATDKLAPALRTSL 373 >gi|242255944|gb|ACS88956.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSTLDL 168 >gi|219849958|ref|YP_002464391.1| GTP-binding proten HflX [Chloroflexus aggregans DSM 9485] gi|219544217|gb|ACL25955.1| GTP-binding proten HflX [Chloroflexus aggregans DSM 9485] Length = 461 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 7/184 (3%) Query: 10 NEHKDFVQDNSRSGCV---ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 + H++ + R V ALVG TNAGKSTL+N GA V T R ++ Sbjct: 220 HRHRELYRQRRRQTGVPIIALVGYTNAGKSTLLNAMTGADVLAEDKLFATLDPTTRQVLL 279 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHR---ELKVNIHDL 122 + + DT G R + I+ AD++ VVD +HR E + Sbjct: 280 PGNTVALMTDTVGFIQKLPPQLIAAFRATLEEIEEADLLLHVVDVTHRNAQEHAQTVEQT 339 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L+E+ ++ +LNKID ++ +IA ++ VSA +G G + + Sbjct: 340 LRELKVDHKPILTVLNKIDLLEGATAEGIDQIAAEMGLPGDIVAVSARRGWGLQTLGERI 399 Query: 183 CSTL 186 +TL Sbjct: 400 VATL 403 >gi|307133252|ref|YP_003885268.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya dadantii 3937] gi|306530781|gb|ADN00712.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya dadantii 3937] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ +A Sbjct: 219 VVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDG 305 >gi|195954205|gb|ACG58808.1| YphC [Helicobacter pylori] gi|195954207|gb|ACG58809.1| YphC [Helicobacter pylori] gi|195954223|gb|ACG58817.1| YphC [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNTLNL 168 >gi|170026449|ref|YP_001722954.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII] gi|205829188|sp|B1JRQ1|MNME_YERPY RecName: Full=tRNA modification GTPase mnmE gi|169752983|gb|ACA70501.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII] Length = 454 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 279 DEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|312882243|ref|ZP_07741989.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122] gi|309370087|gb|EFP97593.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122] Length = 453 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ I +W I AD V +VD Sbjct: 278 DEVEKIGIERAWEEISQADRVLFMVDG 304 >gi|99905857|gb|ABF68623.1| YphC [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I ++ TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNLNP 170 >gi|54307239|ref|YP_128259.1| tRNA modification GTPase TrmE [Photobacterium profundum SS9] gi|81828901|sp|Q6LW56|MNME_PHOPR RecName: Full=tRNA modification GTPase mnmE gi|46911659|emb|CAG18457.1| Putative thiophene and furan oxidation protein ThdF [Photobacterium profundum SS9] Length = 455 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 10/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 + ++ I +W I+ AD V +VD + D+ + +R S L +I NK++ Sbjct: 280 NEVERIGIERAWEEIQQADRVLFMVDGTTTNDTDPKDIWPDFIERLPESMGLTVIRNKVE 339 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E A I + V +SA G G D + +L Sbjct: 340 LTG-----EAAGICH--VNNPPLIRLSARTGEGIDSLREHL 373 >gi|308062715|gb|ADO04603.1| tRNA modification GTPase TrmE [Helicobacter pylori Cuz20] Length = 450 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DIV V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|254509080|ref|ZP_05121183.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 16] gi|219548013|gb|EED25035.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 16] Length = 453 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ I +W I AD V +VD Sbjct: 278 DEVEKIGIERAWDEIAQADRVLFMVDG 304 >gi|108864612|gb|ABA94923.2| small GTP-binding protein domain containing protein, expressed [Oryza sativa Japonica Group] Length = 344 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 15/194 (7%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-S 59 M E++ F E +D + +A+VG N GKS+++N VG +IV+ TTR + Sbjct: 30 MVCSELSNFEELDGVEEDGNYIPAIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDA 89 Query: 60 IVRGIVSEKESQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 I +E + +DT GI +A + L ++ ++ I+ +D+V LVV++ Sbjct: 90 IDTEFTTEDGQKYKLIDTAGIRRRAAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMA 149 Query: 114 ELKVNIHDLLKEIAKRSSRLILILNKIDCV-----KPERLLEQAEIANKLVFIEKTFMV- 167 + + + + I K ++++NK D + + EQ ++ KL ++ +V Sbjct: 150 CITEQDYKIAERIEKEGKACVIVVNKWDTIPNKNHQSTTYYEQ-DVREKLRILDWAPIVY 208 Query: 168 -SATKGHGCDDVLN 180 SAT G D +++ Sbjct: 209 CSATHGSSVDKIIS 222 >gi|328793826|ref|XP_001121197.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Apis mellifera] Length = 488 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 10/136 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG VA++G N GKS+ +N +IVT TTR I+ + ++ DT G Sbjct: 243 RSGIHVAILGKPNVGKSSFLNLLSKKNAAIVTSLPGTTRDIIELTIDICGYPMILADTAG 302 Query: 80 IFNAKDSYHKL-MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK------EIAKRSSR 132 I N ++ ++ I+ + K AD + ++ + +K ++ D LK EI K+ R Sbjct: 303 IRNNPENEIEIEGIKKTKEYSKKADFIICIISAENNVKTSLEDFLKQYKNFLEIDKK--R 360 Query: 133 LILILNKIDCVKPERL 148 ++LILNKID +K + + Sbjct: 361 VLLILNKIDLIKEDEI 376 >gi|283783291|ref|YP_003374045.1| ribosome-associated GTPase EngA [Gardnerella vaginalis 409-05] gi|283441128|gb|ADB13594.1| ribosome-associated GTPase EngA [Gardnerella vaginalis 409-05] Length = 734 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 4/177 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D +D+ G +A++G N GKSTLVNR +G +V++V TR V + Sbjct: 288 QDDAKDSKAVGVIAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNF 347 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 +DT G + + + + ++ +D V +VD L ++ + Sbjct: 348 KLVDTGGWEADVEGIDSSIAQQAQIAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKP 407 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + L +NK+D + E L AE KL E + +SA G G D+L+ ++L A Sbjct: 408 ITLAVNKVDDARSEYLT--AEFW-KLGMGEP-YGISAMHGRGVGDLLDAALNSLKKA 460 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N + S+V TTR V +V +F+DT GI K Sbjct: 475 VALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWLFIDTAGI---K 531 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ DS + + ++ + ++L+ N Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALILFDSSQPIAEQDLKVMSQAVDAGRAIVLVFN 591 Query: 139 KIDCV 143 K D + Sbjct: 592 KWDLM 596 >gi|261365695|ref|ZP_05978578.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996] gi|288565791|gb|EFC87351.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996] Length = 454 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 3/152 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G ++IVT TTR VR ++ + +DT G+ Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I S + AD+ +++D L +L + + + I I NK D Sbjct: 280 DVVEQIGIERSRKAVSEADVALILIDPREGLNAKTQAILNSLPEGLKK-IEIHNKADLTG 338 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +A + +SA G G D Sbjct: 339 EPVAVRSDGLAQ--TGADTVISLSAKTGAGLD 368 >gi|122700653|emb|CAL87915.1| GTPase [Helicobacter pylori] gi|122700671|emb|CAL87924.1| GTPase [Helicobacter pylori] gi|122701499|emb|CAL88139.1| GTPase [Helicobacter pylori] gi|122701605|emb|CAL88192.1| GTPase [Helicobacter pylori] gi|122701609|emb|CAL88194.1| GTPase [Helicobacter pylori] gi|242255850|gb|ACS88909.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNLNP 170 >gi|78223517|ref|YP_385264.1| GTP-binding protein EngA [Geobacter metallireducens GS-15] gi|123571482|sp|Q39T85|DER_GEOMG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78194772|gb|ABB32539.1| GTP-binding protein Era, putative [Geobacter metallireducens GS-15] Length = 439 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 11/168 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 VA+VG N GKSTL NR VG + +IV TR V+ E+ + +DT G Sbjct: 4 LVAIVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFEAPFILIDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNK 139 ++D + M S ++ AD++ ++D L V + ++L+ + K + ++NK Sbjct: 64 SEDRLLQQMREQSQLAMEEADVIIFLMDGRAGLTPSDVEVVEMLRRVKK---PVFFVVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D K E E A+ + I +SA G +D++ + + LP Sbjct: 121 VDGEKIEN--EAADFYT--LGIGTLHTISAEHNRGVNDLMEEVVAALP 164 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+LVNR +G + + TTR V + + + + + +DT GI Sbjct: 178 IAVVGRPNVGKSSLVNRLLGFERVVANPTPGTTRDSVDTLFACNKKRYLLIDTAGIRRKG 237 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + KL + S +I+ AD+V +++++ + + + I ++NK D Sbjct: 238 KTTQKLEKYSVVDSLRSIERADVVLIIINAEEGVTEQDERIAGYAFEAGKACIFVVNKWD 297 Query: 142 CVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + + + ++Q + K + VSA G + V+ Sbjct: 298 TLAKDNSTLGKFVDQIKTEFKYLSFAPIVFVSAKSGQRINRVM 340 >gi|51598233|ref|YP_072424.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP 32953] gi|186897489|ref|YP_001874601.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+] gi|81638080|sp|Q663S6|MNME_YERPS RecName: Full=tRNA modification GTPase mnmE gi|254811499|sp|B2K868|MNME_YERPB RecName: Full=tRNA modification GTPase mnmE gi|51591515|emb|CAH23187.1| putative thiophene and furan oxidation protein [Yersinia pseudotuberculosis IP 32953] gi|186700515|gb|ACC91144.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+] Length = 454 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 279 DEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|15646061|ref|NP_208243.1| tRNA modification GTPase TrmE [Helicobacter pylori 26695] gi|14195258|sp|O25991|MNME_HELPY RecName: Full=tRNA modification GTPase mnmE gi|2314627|gb|AAD08492.1| thiophene and furan oxidizer (tdhF) [Helicobacter pylori 26695] Length = 461 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 204 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 263 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 264 EEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 323 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 324 LIDTLNRAKKPCIVVLNKND 343 >gi|22127986|ref|NP_671409.1| tRNA modification GTPase TrmE [Yersinia pestis KIM 10] gi|45443733|ref|NP_995272.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Microtus str. 91001] gi|108810138|ref|YP_654054.1| tRNA modification GTPase TrmE [Yersinia pestis Antiqua] gi|108814120|ref|YP_649887.1| tRNA modification GTPase TrmE [Yersinia pestis Nepal516] gi|145601169|ref|YP_001165245.1| tRNA modification GTPase TrmE [Yersinia pestis Pestoides F] gi|150260963|ref|ZP_01917691.1| putative thiophene and furan oxidation protein [Yersinia pestis CA88-4125] gi|162421232|ref|YP_001608454.1| tRNA modification GTPase TrmE [Yersinia pestis Angola] gi|165926155|ref|ZP_02221987.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. F1991016] gi|165939964|ref|ZP_02228501.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. IP275] gi|166009545|ref|ZP_02230443.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. E1979001] gi|166213299|ref|ZP_02239334.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. B42003004] gi|167401538|ref|ZP_02307032.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422868|ref|ZP_02314621.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425489|ref|ZP_02317242.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229839810|ref|ZP_04459969.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841895|ref|ZP_04462051.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis biovar Orientalis str. India 195] gi|229896772|ref|ZP_04511935.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis Pestoides A] gi|229904660|ref|ZP_04519771.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis Nepal516] gi|270488372|ref|ZP_06205446.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27] gi|294505627|ref|YP_003569689.1| tRNA modification GTPase [Yersinia pestis Z176003] gi|123073044|sp|Q1CCJ3|MNME_YERPN RecName: Full=tRNA modification GTPase mnmE gi|123245359|sp|Q1C0B3|MNME_YERPA RecName: Full=tRNA modification GTPase mnmE gi|166234833|sp|A4TSL0|MNME_YERPP RecName: Full=tRNA modification GTPase mnmE gi|254811500|sp|A9R5S1|MNME_YERPG RecName: Full=tRNA modification GTPase mnmE gi|21961132|gb|AAM87660.1|AE014013_5 GTP-binding protein [Yersinia pestis KIM 10] gi|45438603|gb|AAS64149.1| GTP-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|108777768|gb|ABG20287.1| tRNA modification GTPase trmE [Yersinia pestis Nepal516] gi|108782051|gb|ABG16109.1| tRNA modification GTPase trmE [Yersinia pestis Antiqua] gi|145212865|gb|ABP42272.1| tRNA modification GTPase trmE [Yersinia pestis Pestoides F] gi|149290371|gb|EDM40448.1| putative thiophene and furan oxidation protein [Yersinia pestis CA88-4125] gi|162354047|gb|ABX87995.1| tRNA modification GTPase TrmE [Yersinia pestis Angola] gi|165912090|gb|EDR30730.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. IP275] gi|165922015|gb|EDR39192.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. F1991016] gi|165991467|gb|EDR43768.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. E1979001] gi|166205597|gb|EDR50077.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. B42003004] gi|166958260|gb|EDR55281.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048920|gb|EDR60328.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055503|gb|EDR65296.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678778|gb|EEO74883.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis Nepal516] gi|229691234|gb|EEO83287.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis biovar Orientalis str. India 195] gi|229696176|gb|EEO86223.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700210|gb|EEO88246.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis Pestoides A] gi|262363792|gb|ACY60513.1| tRNA modification GTPase [Yersinia pestis D106004] gi|262367728|gb|ACY64285.1| tRNA modification GTPase [Yersinia pestis D182038] gi|270336876|gb|EFA47653.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27] gi|294356086|gb|ADE66427.1| tRNA modification GTPase [Yersinia pestis Z176003] gi|320017433|gb|ADW01005.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 454 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 279 DEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|323343319|ref|ZP_08083546.1| ribosome-associated GTPase EngA [Prevotella oralis ATCC 33269] gi|323095138|gb|EFZ37712.1| ribosome-associated GTPase EngA [Prevotella oralis ATCC 33269] Length = 458 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 13/170 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR ++ +IV+ TTR G + + +DT G + Sbjct: 23 ANLVAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCNWNGREFSVVDTGGWV 82 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRL--ILI 136 N+ D + + R + ADIV +VD+ + D +++A+ R S+L +L+ Sbjct: 83 VNSDDIFEDAIRRQVLVATEEADIVIFLVDTM----TGVTDWDEDVAQILRRSKLPVLLV 138 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK+D + A+ + + VSA G G D+L+ L + L Sbjct: 139 ANKVD--NSSDYYQAADFYR--LGLGDPVCVSAATGGGTGDLLDLLITKL 184 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+++N F+G +IVT TTR + + +DT GI Sbjct: 200 AVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRKNK 259 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++D+ L++D+ R ++ ++ + I K + L++++NK D Sbjct: 260 VTEDLEFYSVMRSIRSIENSDVCILMIDATRGIEAQDMNIFQLIQKNNKSLVVVVNKWDL 319 Query: 143 VK 144 V+ Sbjct: 320 VE 321 >gi|302537342|ref|ZP_07289684.1| GTP-binding protein HflX [Streptomyces sp. C] gi|302446237|gb|EFL18053.1| GTP-binding protein HflX [Streptomyces sp. C] Length = 501 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 15/191 (7%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI +D + R VA+ G TNAGKS+L+NR GA V + T V Sbjct: 259 EIAEMKTGRDIKRQERRRNKIPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 318 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ +VD SH E Sbjct: 319 RRAETPSGRVYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHIVDGSHPAPEEQLA 378 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++E+ + I+++NK D P + +L+ IEK + VSA G G + Sbjct: 379 AVREVIREVGAVNVPEIVVINKADAADP-------LVLQRLLRIEKHSIAVSARTGQGIE 431 Query: 177 DVLNYLCSTLP 187 ++L + + LP Sbjct: 432 ELLALIDTELP 442 >gi|255068623|ref|ZP_05320478.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256] gi|255047121|gb|EET42585.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256] Length = 454 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 3/152 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G ++IVT TTR VR ++ + +DT G+ Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I S + AD+ +++D + +L + + + I I NK D Sbjct: 280 DVVEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNSLPEGLKK-IEIHNKADLTG 338 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +A E +SA G G D Sbjct: 339 EPVAVRSDGLAQ--TGAETVISLSAKTGAGLD 368 >gi|332288923|ref|YP_004419775.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179] gi|330431819|gb|AEC16878.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179] Length = 454 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++ G V + G NAGKS+L+N G +IVT TTR ++R + Sbjct: 203 VQSQAKQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVLREHIHLD 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I AD V ++DS Sbjct: 263 GMPLHIIDTAGLRTATDEVERIGIERAWQEIDQADRVLFMLDS 305 >gi|294637684|ref|ZP_06715962.1| ribosome-associated GTPase EngA [Edwardsiella tarda ATCC 23685] gi|291089160|gb|EFE21721.1| ribosome-associated GTPase EngA [Edwardsiella tarda ATCC 23685] Length = 496 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 211 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 270 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + + LL I L++++NK D Sbjct: 271 KVTDTVEKFSVIKTLQAIEDANVVLLVIDARQGISDQDLSLLGFILNSGRSLVVVVNKWD 330 Query: 142 CVK---PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + E++ + ++ V + +SA G G ++ Sbjct: 331 GLSLEVKEQVKDMLDLRLGFVDFARIHFISALHGSGVGNLF 371 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 53/120 (44%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 ENGVETHMAEQSLLAIEEADIVLFLVDARSGLLPADEAIARHLRSRDKSTFLVANKTDGI 123 >gi|253563506|ref|ZP_04840963.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_2_5] gi|251947282|gb|EES87564.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_2_5] Length = 465 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETS 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNKIDC 142 D+ L I ++ + A+IV ++DS + + L +I R +LIL+ NK++ Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMIDSADAIS-QLTLLSDKILPRCEHKQLILVFNKVEL 341 Query: 143 VK 144 + Sbjct: 342 IN 343 >gi|157961137|ref|YP_001501171.1| GTP-binding protein EngA [Shewanella pealeana ATCC 700345] gi|189037162|sp|A8H249|DER_SHEPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157846137|gb|ABV86636.1| small GTP-binding protein [Shewanella pealeana ATCC 700345] Length = 490 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NK+D + Sbjct: 64 EEGIETRMAEQSLAAIEEADVVLFLTDARAGLTAADLAIAQHLRSREKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + AE + + + + + ++A +G G +++ Y LAP+ Sbjct: 124 DADSAC--AEFWS--LGLGEVYQMAAAQGRGVTNMIEY-----SLAPYA 163 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + + V +DT G+ Sbjct: 202 LAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERQGREYVLIDTAGVRRRS 261 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ +++V LV+D+ + LL + L++ +NK D Sbjct: 262 KVHETVEKFSVIKTLKAVEDSNVVLLVIDAREGIAEQDLGLLGFVLNAGRALVIAINKWD 321 Query: 142 CVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + +R+ + E+ +L FI+ + +SA G G Sbjct: 322 GIDQNIKDRV--KTELDRRLGFIDFARIHFISALHGTGV 358 >gi|295109139|emb|CBL23092.1| GTP-binding protein HflX [Ruminococcus obeum A2-162] Length = 417 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 23/195 (11%) Query: 4 GEITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 E+ +H++ ++ G A+VG TNAGKSTL+N GA + T Sbjct: 179 AELFQVEKHRELIRGKRSRGNLKTAAIVGYTNAGKSTLLNTLTGAGILAEDKLFATLDPT 238 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI---KHADIVCLVVDS---HRE 114 R + + QI+ DT G F K +H ++ ST+ K+AD + VVD+ E Sbjct: 239 TRVLELKDGQQILLTDTVG-FIRKLPHH--LVEAFKSTLEEAKYADYIIHVVDASNPQAE 295 Query: 115 LKVN-IHDLLKEIAKRSSRLILILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKG 172 L+++ +++ L+E+ ++I +LNK D VK R+ + QA+ T SA G Sbjct: 296 LQMHTVYETLRELGATGKKIITLLNKQDKVKDVRIRDLQADY---------TVKCSARSG 346 Query: 173 HGCDDVLNYLCSTLP 187 G +++ + L L Sbjct: 347 EGLEELKDVLAKILA 361 >gi|257791089|ref|YP_003181695.1| small GTP-binding protein [Eggerthella lenta DSM 2243] gi|317488189|ref|ZP_07946760.1| ribosome-associated GTPase EngA [Eggerthella sp. 1_3_56FAA] gi|325830789|ref|ZP_08164173.1| ribosome biogenesis GTPase Der [Eggerthella sp. HGA1] gi|257474986|gb|ACV55306.1| small GTP-binding protein [Eggerthella lenta DSM 2243] gi|316912694|gb|EFV34232.1| ribosome-associated GTPase EngA [Eggerthella sp. 1_3_56FAA] gi|325487196|gb|EGC89639.1| ribosome biogenesis GTPase Der [Eggerthella sp. HGA1] Length = 438 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 5/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST VNR A +IV TR +DT GI Sbjct: 6 VAVVGRPNVGKSTFVNRIAQADEAIVHEMRGVTRDRSYHEADWNGVDFKLIDTGGIEMGD 65 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + IR + + AD++ +VD + + + + + K S + L++NK+D Sbjct: 66 DDAFQGSIRNQALAGANEADVILFLVDGKTGVNADDEAVARILRKTSKPVFLVVNKLDT- 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 P R+ E E + + + VSA GHG D+L+ + + L Sbjct: 125 -PNRMDEVWEFYQ--LGLGDPWPVSAMHGHGTGDLLDEVVNEL 164 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 9/160 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G NAGKS+L N+ SIV+ TTR + + + +DT G+ Sbjct: 181 VAIIGRPNAGKSSLTNKLTANDRSIVSDVAGTTRDAIDTHIVHDGQRYTIVDTAGLRRKS 240 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D + +R + I A++ LV+DS L + A+R ++++LNK Sbjct: 241 QIDEDVEYYGFVR-AMRAIDRANVALLVIDSTLGLTDQDQRVAGFAAERGCAMVIVLNKW 299 Query: 141 DCVK-PERLLEQAE-IANKLVFI--EKTFMVSATKGHGCD 176 D ++ PE E E IA++L F+ +SA G D Sbjct: 300 DLIEGPEAKAEIRERIADRLTFVGYAPVIAISALTGKKVD 339 >gi|265762625|ref|ZP_06091193.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_16] gi|263255233|gb|EEZ26579.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_16] Length = 465 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETS 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNKIDC 142 D+ L I ++ + A+IV ++DS + + L +I R +LIL+ NK++ Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMIDSADAIS-QLTLLSDKILPRCEHKQLILVFNKVEL 341 Query: 143 VK 144 + Sbjct: 342 IN 343 >gi|322421976|ref|YP_004201199.1| tRNA modification GTPase TrmE [Geobacter sp. M18] gi|320128363|gb|ADW15923.1| tRNA modification GTPase TrmE [Geobacter sp. M18] Length = 455 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N GKS+L+N + K +IVT TTR ++ +V+ + LDT GI + Sbjct: 222 SVVIAGKPNVGKSSLLNTLLKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRES 281 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D + +RLS I AD+V VVD +L I +S I++ NK D Sbjct: 282 EDQVEQEGVRLSLDRIPKADLVLFVVDGSSPFGEEDASILLAIGSKSC--IVVRNKSD 337 >gi|122701371|emb|CAL88075.1| GTPase [Helicobacter pylori] gi|122701395|emb|CAL88087.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLDL 168 >gi|325123489|gb|ADY83012.1| tRNA modification GTPase [Acinetobacter calcoaceticus PHEA-2] Length = 451 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 12/136 (8%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 203 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 263 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 322 Query: 126 IAKRSSRLILILNKID 141 I R RL+LI NK D Sbjct: 323 IEPR--RLMLIGNKCD 336 >gi|294638333|ref|ZP_06716586.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685] gi|291088586|gb|EFE21147.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685] Length = 455 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 280 DEVERIGIERAWQEIEQADRVLFMVDG 306 >gi|317153825|ref|YP_004121873.1| ribosome-associated GTPase EngA [Desulfovibrio aespoeensis Aspo-2] gi|316944076|gb|ADU63127.1| ribosome-associated GTPase EngA [Desulfovibrio aespoeensis Aspo-2] Length = 497 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 8/177 (4%) Query: 17 QDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +D + G + ++G NAGKS+++NR +G IV+ TTR + + + F+ Sbjct: 179 EDTTERGLRLTMLGRPNAGKSSIINRIIGTDRLIVSDVAGTTRDSIDVTFERQGKRYTFV 238 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ N ++ K+ + + K +D+ LV+D + L++ +AK + Sbjct: 239 DTAGVRRRANIQEHLEKISVIRALKNSKRSDVTILVIDITLGVGRQDKRLIEFLAKEKTP 298 Query: 133 LILILNKIDCV---KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +++ NK D + + +R LE +++ M SA KG G ++ L TL Sbjct: 299 FMVVCNKADLIPRSETKRALEAFREELRIIPYVPLIMTSANKGVGIGKIIP-LAETL 354 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 11/127 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ-TTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + K +TH + TR + G + + +DT G+ Sbjct: 5 VALVGRPNVGKSTLFNRLL-RKSRAITHDLPGVTRDRIYGECQMGDVKFDLVDTGGMVLE 63 Query: 84 KDSYHKL-------MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 ++ +L + + I A + VVD + + + + E +RS + +++ Sbjct: 64 SEATPELSKDFEDEIFEQAREAINEAHAILFVVDGKQGMS-PLDEQAAEFVRRSGKPVMV 122 Query: 137 L-NKIDC 142 L NK+D Sbjct: 123 LVNKVDS 129 >gi|114762902|ref|ZP_01442334.1| GTP-binding protein EngA [Pelagibaca bermudensis HTCC2601] gi|114544512|gb|EAU47519.1| GTP-binding protein EngA [Roseovarius sp. HTCC2601] Length = 487 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ +A Sbjct: 4 SLAIVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGEGKLGDLRFTVIDTAGLEDA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS M RL+ + AD+ ++D+ + + + KR+ +IL NK + Sbjct: 64 TDDSLPGRMRRLTERAVDMADVCLFMIDARVGVTPTDEIFAEILRKRAKHVILGANKSEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + + +A + + + +SA G G D+ L PLA Sbjct: 124 SAADAGVLEA----YALGLGEPLRISAEHGEGMPDLYGALQ---PLA 163 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 22/188 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG NAGKSTLVN+ +G + + + TR + + DT G+ Sbjct: 204 IAVVGRPNAGKSTLVNKIIGEERLLTGPEAGITRDAISVRTEWGGVPMRIFDTAGMRKKA 263 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R ++I +NK Sbjct: 264 RVQEKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVVIAVNK 321 Query: 140 --IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 I+ K E+L + E +L+ + VSA G G D +V N S Sbjct: 322 WDIEDEKQEKLRDLKESFERLLPQLRGAPLVTVSAKTGRGLDRLQAAIMKAWEVWNRRIS 381 Query: 185 TLPLAPWV 192 T L W+ Sbjct: 382 TGQLNRWL 389 >gi|146277534|ref|YP_001167693.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides ATCC 17025] gi|145555775|gb|ABP70388.1| GTP-binding protein, HSR1-related [Rhodobacter sphaeroides ATCC 17025] Length = 448 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 14/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +RG+ +++ DT G + Sbjct: 229 IVALVGYTNAGKSTLFNRMTGAEVLAKDMLFATLDPTMRGVTLPSGRKVILSDTVGFISD 288 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHREL---KVNIHDLLKEIA-KRSSRLILILN 138 + R + + AD++ V D +H E ++ ++L+ + K ++ + N Sbjct: 289 LPTQLVAAFRATLEEVLEADLILHVRDIAHPETAEQAADVAEILQSLGVKGATPQYEVWN 348 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K+D V+ E+L+ QA+ + E F +SA G G ++L + + Sbjct: 349 KLDLVEGSAHEQLVAQAQRS------ETVFALSALTGEGLPELLEAVSAAF 393 >gi|322373918|ref|ZP_08048453.1| ribosome-associated GTPase EngA [Streptococcus sp. C150] gi|321277290|gb|EFX54360.1| ribosome-associated GTPase EngA [Streptococcus sp. C150] Length = 436 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++ + +IL +NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVARILYKTHKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +A+I + + + VS+ G G DVL+ + LP Sbjct: 123 -NPEM---RADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVENLP 164 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR +I V + + +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I +DIV +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGK---GIIIVVN 294 Query: 139 KIDCVK 144 K D +K Sbjct: 295 KWDTIK 300 >gi|302672308|ref|YP_003832268.1| tRNA modification GTPase TrmE [Butyrivibrio proteoclasticus B316] gi|302396781|gb|ADL35686.1| tRNA modification GTPase TrmE [Butyrivibrio proteoclasticus B316] Length = 478 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 11/158 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N G + +IVT TTR I+ V + + +DT GI N +D Sbjct: 238 IVGKPNAGKSSLLNTLTGDERAIVTDIAGTTRDIIEETVRLGDIVLHLIDTAGIRNTEDV 297 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + + S I+ A++V ++DS E+ + ++ + I++LNK D Sbjct: 298 IEKIGVDKAKSMIQEAELVLYILDSTAEIDDEDN--DIIDLCKNKKTIVLLNKDDLSDEI 355 Query: 147 RLLEQ------AEIANKLVFIEKTFMVSATKGHGCDDV 178 ++ + ++ +N + I KT M+ KG+G DD+ Sbjct: 356 KITDDIVRMRFSDTSNYNLPIIKTSML---KGNGIDDL 390 >gi|224535783|ref|ZP_03676322.1| hypothetical protein BACCELL_00647 [Bacteroides cellulosilyticus DSM 14838] gi|224522603|gb|EEF91708.1| hypothetical protein BACCELL_00647 [Bacteroides cellulosilyticus DSM 14838] Length = 437 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ + IR S +I++AD+ L++D+ R ++ ++ I K + L++++NK Sbjct: 239 VNEDLEYYSV-IR-SIRSIENADVCILMLDATRGVESQDLNIFSLIQKNAKGLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVQ 300 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 20/190 (10%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILI 136 N+ D + + + + + AD++ VVD + DL ++A +R+ + ++LI Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMN----GVTDLDMQVAAILRRTQKPVLLI 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NK D L A KL + + +SA G G D+++ + T AD Sbjct: 118 ANKTDN---GELQYNAPEFYKL-GLGDPYCISAMTGSGTGDMMDLIVGTFK-----KEAD 168 Query: 197 QI--SDLPMF 204 +I D+P F Sbjct: 169 EILDEDIPRF 178 >gi|149190487|ref|ZP_01868758.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1] gi|148835741|gb|EDL52707.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1] Length = 474 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 239 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 298 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+ AD V +VD + ++ + R S + +I NK+D Sbjct: 299 DEVERIGIERAWEEIEQADRVLFMVDGTTTDATDPKEIWPDFIDRLPSSIGITVIRNKVD 358 >gi|114771865|ref|ZP_01449258.1| GTP-binding protein EngA [alpha proteobacterium HTCC2255] gi|114547681|gb|EAU50572.1| GTP-binding protein EngA [alpha proteobacterium HTCC2255] Length = 497 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR VG ++++V + TR + G + +DT G+ A Sbjct: 4 TVALVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGDAKMGPVKFTVIDTAGLEEA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D S M L+ + AD+ ++D+ + + + K+S+++IL+ NK + Sbjct: 64 TDESLQGRMRMLTERAVDMADVCIFMMDARAGVLPADRVFAEILRKKSAKVILVANKAE 122 Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 ++++G NAGKSTLVN+ +G + + + TR + + + DT GI Sbjct: 203 ISIIGRPNAGKSTLVNQILGQERMLTGPEAGITRDSISINHDWDDVPMRLWDTAGIRKKA 262 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K +++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 263 KVQEKLEKLSVSDGLRAVKFSEVVVVLLDA--AIPFEQQDLRIADLAEREGRAVVVAVNK 320 Query: 140 --IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD 176 ++ K E+L + E +L+ + +SA G G D Sbjct: 321 WDVETEKQEKLKDIREKFTRLLPQLRGAPLVTISAKTGRGLD 362 >gi|332288185|ref|YP_004419037.1| GTP-binding protein EngA [Gallibacterium anatis UMN179] gi|330431081|gb|AEC16140.1| GTP-binding protein EngA [Gallibacterium anatis UMN179] Length = 507 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 59/123 (47%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ ++V + TR G ++ + +DT GI + Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVANFPGLTRDRKYGQGQLNGTEFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I ADIV +VD+ L + + + +R +++ NKID + Sbjct: 64 EQGIEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIAQYLRRREKTTVVVANKIDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 6/176 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 221 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 280 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 281 KVTLTVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRALVIVVNKWD 340 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 + E + ++E+ +L FI+ + +SA G G ++ + A YS Sbjct: 341 GLSQEIKDNIKSELDRRLDFIDFARVHFISALHGSGVGNLFESVNEAYQSATKRYS 396 >gi|323496919|ref|ZP_08101947.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326] gi|323317993|gb|EGA70976.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326] Length = 453 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ I +W I AD V +VD Sbjct: 278 DEVEKIGIERAWDEIAQADRVLFMVDG 304 >gi|304383244|ref|ZP_07365715.1| tRNA modification GTPase TrmE [Prevotella marshii DSM 16973] gi|304335626|gb|EFM01885.1| tRNA modification GTPase TrmE [Prevotella marshii DSM 16973] Length = 460 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG VA+VG TN GKSTL+NR + + +IV+ TTR ++ + + F+DT G Sbjct: 223 KSGVSVAIVGKTNVGKSTLLNRLLKEERAIVSEIHGTTRDVIEDTMQIRGVTFRFIDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D L I ++ + A IV ++D+ I ++ E + +LI++ NK Sbjct: 283 IRETNDKIESLGIERTYRKLSEAAIVIWMIDASPTFS-EIQEM--EARVKGKKLIVVANK 339 Query: 140 ID 141 +D Sbjct: 340 MD 341 >gi|217966557|ref|YP_002352063.1| tRNA modification GTPase TrmE [Dictyoglomus turgidum DSM 6724] gi|217335656|gb|ACK41449.1| tRNA modification GTPase TrmE [Dictyoglomus turgidum DSM 6724] Length = 455 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 12/170 (7%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E D+++ R V LVG N GKS+L N + +IVT TTR + G + Sbjct: 210 ERGDWIKGGYR---VILVGRPNVGKSSLFNALMKEDRAIVTPIPGTTRDYIEGELYLSSG 266 Query: 71 QIV-FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AK 128 +V DT G+ KD K+ + + ++ ++++ VVD E+ +L ++I + Sbjct: 267 HLVKIYDTAGLGIPKDILDKMGMEKTEKILEKSNLILFVVDGSGEISEEEINLFEKIRSY 326 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 ++ +IL++NK+D L ++ E++ IEK F VSA +G G +D+ Sbjct: 327 QNKEIILVINKVD------LPQKVELSVFSEDIEKIF-VSAKEGIGIEDL 369 >gi|163841322|ref|YP_001625727.1| GTP-binding protein EngA [Renibacterium salmoninarum ATCC 33209] gi|162954798|gb|ABY24313.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209] Length = 504 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A+VG N GKSTLVNR +G + ++V TR V + +DT G F+ Sbjct: 68 VLAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYNAEWNGREFTVVDTGGWEFD 127 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AK H+ + + I+ AD V VVD+ ++K + + +IL+ NK D Sbjct: 128 AK-GIHQRVAEQAEMAIELADAVLFVVDATVGATAMDESMMKMLRRSKKPIILVGNKADD 186 Query: 143 VKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + +++A + + + + VSA G G D+L+ + LP Sbjct: 187 PRTD-----SDVAALWGLGLGEPWSVSAQHGRGVADLLDKIMEILP 227 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 29/190 (15%) Query: 16 VQDNSRSGC---VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 V+ R G +AL+G N GKS+L+N+ G++ +V TTR V + + Sbjct: 232 VETTDRRGGPRRIALIGRPNVGKSSLLNKLAGSERVVVDPMAGTTRDPVDEFIELGDRTW 291 Query: 73 VFLDTPGI------FNAKDSYHKLMIRLSWSTIKHAD--IVCLVVD---SHRELKVNIHD 121 F+DT GI D Y L + S ++ A+ +V L VD S +++++ Sbjct: 292 RFVDTAGIRRRQHMAQGTDFYASLRTQ---SALEKAEVAVVLLAVDEVLSEQDVRI---- 344 Query: 122 LLKEIAKRSSR-LILILNKIDCVKPE--RLLEQAEIANKLVFIE--KTFMVSATKGHGCD 176 ++A S R L+L NK D + E R LE+ EI L +E +SA G D Sbjct: 345 --LQLAIESGRALVLAFNKWDLLDDERRRYLER-EIEQDLAHVEWAPRVNISAKTGWHKD 401 Query: 177 DVLNYLCSTL 186 ++ L + L Sbjct: 402 RLVPALDTAL 411 >gi|127512226|ref|YP_001093423.1| GTP-binding protein EngA [Shewanella loihica PV-4] gi|166225856|sp|A3QCG6|DER_SHELP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|126637521|gb|ABO23164.1| small GTP-binding protein [Shewanella loihica PV-4] Length = 489 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 4/161 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + +R ++ NK+D + Sbjct: 64 EEGIETRMAEQSLAAIEEADVVLFLTDARAGLTAADEAIAEHLRRREKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + + + + + + ++A +G G +++ Y + Sbjct: 124 DADSACGEFWA----LGLGEVYQMAAAQGRGVTNMIEYALT 160 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + V +DT G+ Sbjct: 202 LAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPLERDGQEYVIIDTAGVRRRS 261 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LVVD+ + LL L++ +NK D Sbjct: 262 KVHETVEKFSVIKTLKAVEDANVVLLVVDAREGIAEQDLGLLGFALNVGRALVIAVNKWD 321 Query: 142 CVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + ER+ ++E+ +L FI+ + +SA G G Sbjct: 322 GIDQDVKERV--KSELDRRLGFIDFARIHFISALHGTGV 358 >gi|90021085|ref|YP_526912.1| GTP-binding protein EngA [Saccharophagus degradans 2-40] gi|123396308|sp|Q21KS9|DER_SACD2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89950685|gb|ABD80700.1| Small GTP-binding protein domain [Saccharophagus degradans 2-40] Length = 471 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV + TR G + + + + +DT GI Sbjct: 4 TLALVGRPNVGKSTLFNRLTRSRDAIVANFSGLTRDRQYGEATHGDKRFIVVDTGGISGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + + + + + L+ NK+D V Sbjct: 64 EEGIDSYMAGQSLQAIEEADMVAFIVDARVGLTAADMQIAQHLRTCNKPIFLLANKVDGV 123 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI-VFL 75 +D ++ +A+VG N GKSTLVNR +G +V TTR + I E++ + + Sbjct: 171 EDKAKGIKLAIVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSIY-IEYERDGKAYTII 229 Query: 76 DTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ N K S K I + I A++V LV+D+ + L+ + Sbjct: 230 DTAGVRRRKNIKLSVEKFSIVKTLQAIDDANVVILVMDAQEGIVDQDLHLMGHVIDSGRA 289 Query: 133 LILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 L++ LNK D + + + + E++ +L F++ +SA G G D+ Sbjct: 290 LVVALNKWDNLDNDHKSYVKTELSRRLQFVDFADLHFISALHGTGVGDL 338 >gi|56751772|ref|YP_172473.1| GTP-binding protein EngA [Synechococcus elongatus PCC 6301] gi|81301149|ref|YP_401357.1| GTP-binding protein EngA [Synechococcus elongatus PCC 7942] gi|81820595|sp|Q5N167|DER_SYNP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123556312|sp|Q31KP9|DER_SYNE7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56686731|dbj|BAD79953.1| GTP-binding protein engA [Synechococcus elongatus PCC 6301] gi|81170030|gb|ABB58370.1| Small GTP-binding protein domain [Synechococcus elongatus PCC 7942] Length = 453 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 8/170 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N F+G + +IV+ TTR + ++ + + +DT GI + Sbjct: 180 VAIVGRPNVGKSSLLNSFLGEQRAIVSPIAGTTRDAIDTVIERNDQRYRLVDTAGIRRKR 239 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I S+ I+ AD+ LV+D + L I + ++++NK D Sbjct: 240 GVDYGPEFFGINRSFKAIRRADVCLLVIDVLDGVTDQDQKLAGRIEEDGRACVIVVNKWD 299 Query: 142 CVKPER--LLE-QAEIANKLVFIEKTFM--VSATKGHGCDDVLNYLCSTL 186 + + + E + ++ ++L F++ M VSA G + +L+ + + + Sbjct: 300 AHEKDSSTIYEVERQLRDRLYFLDWAPMIFVSALTGQRVEKILDQVNTVV 349 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKSTLVNR G++ +IV + TR + +DT G +F+ Sbjct: 6 VAILGRPNVGKSTLVNRLAGSREAIVHDEPGVTRDRTYQEAFWCDRDFTVVDTGGLVFDD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L+ + + A + LVVD L +++ + ++ +++ +NK C Sbjct: 66 DTEFLPLIREQAELALAEAALAVLVVDGQAGLTAADNEIADWLRHQNRPIVVAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 P++ QA L F E +S+ G G ++L+ + LP A Sbjct: 124 SPDKGAAQAAEFWSLGFGEP-LPISSIHGSGTGELLDRVLELLPPA 168 >gi|262281557|ref|ZP_06059336.1| tRNA modification GTPase mnmE [Acinetobacter calcoaceticus RUH2202] gi|262257016|gb|EEY75755.1| tRNA modification GTPase mnmE [Acinetobacter calcoaceticus RUH2202] Length = 454 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 12/136 (8%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 206 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D ++ LK+ + Sbjct: 266 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEH 325 Query: 126 IAKRSSRLILILNKID 141 I R RL+LI NK D Sbjct: 326 IEPR--RLMLIGNKCD 339 >gi|261838727|gb|ACX98493.1| thiophene/furan oxidation protein [Helicobacter pylori 51] Length = 461 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 204 QIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 263 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DIV V D + L+ + Sbjct: 264 EEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFN 323 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 324 LIDTLNRAKKPCIVVLNKND 343 >gi|255011872|ref|ZP_05283998.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12] gi|313149706|ref|ZP_07811899.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12] gi|313138473|gb|EFR55833.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12] Length = 465 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNKID 141 D L I ++ + A+IV ++DS +LK+ +L + +LIL+ NK++ Sbjct: 283 DMIESLGIERTFQKLDQAEIVLWIIDSADAISQLKLLSDKILPRCEHK--QLILVFNKVE 340 Query: 142 CVK 144 + Sbjct: 341 LIN 343 >gi|229542320|ref|ZP_04431380.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1] gi|229326740|gb|EEN92415.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1] Length = 461 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 221 REGLSTAIIGRPNVGKSSLLNSLVQENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++S L L + A +I+ILNK Sbjct: 281 IRETEDIVERIGVERSRKALKEADLILLVINSSEPLSPEDEALFE--AVEGMDVIVILNK 338 Query: 140 IDC 142 D Sbjct: 339 WDL 341 >gi|307564580|ref|ZP_07627120.1| ribosome-associated GTPase EngA [Prevotella amnii CRIS 21A-A] gi|307346738|gb|EFN92035.1| ribosome-associated GTPase EngA [Prevotella amnii CRIS 21A-A] Length = 437 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+L+N F+G + +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSLINSFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++D+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VSEDLEFYSVMRSIRSIENSDVCILMIDATRGIESQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VQ 300 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 5/166 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTKTRHAIVSDVAGTTRDRQYGKCLWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + + ADIV +VD+ + D+ + + + ++L+ NK+ Sbjct: 62 VKSDDIFEDAIRQQVLVATEEADIVLFLVDTETGITDWDEDVALILRRTNLPVLLVANKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D + AE + + +SA G G D+L+ L + Sbjct: 122 DNMG--EYYTSAEFYK--LGLGDPICISAQTGSGTGDLLDILLEKM 163 >gi|225570320|ref|ZP_03779345.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM 15053] gi|225160852|gb|EEG73471.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM 15053] Length = 478 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N VG + +IVT TTR I+ ++ + + +DT GI D Sbjct: 232 IVGRPNAGKSSLLNVLVGEERAIVTEVAGTTRDILEEHINLQGISLNIIDTAGIRETDDI 291 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + AD++ V+D+ L N +LK I + + I++LNK D Sbjct: 292 VEKIGVDKAKMYADEADLILYVIDASAPLDENDRQILKMIYGKPA--IILLNKTD 344 >gi|166030917|ref|ZP_02233746.1| hypothetical protein DORFOR_00598 [Dorea formicigenerans ATCC 27755] gi|166029184|gb|EDR47941.1| hypothetical protein DORFOR_00598 [Dorea formicigenerans ATCC 27755] Length = 442 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 4/142 (2%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 I F EH +++SR VA+VG N GKS+++N+ +G + IV+ TTR + + Sbjct: 162 IEHFPEHAGEEEEDSRP-RVAIVGKPNVGKSSIINKLLGEQRVIVSDIAGTTRDAIDTEI 220 Query: 66 SEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + VF+DT G+ K+ + I + + ++ AD+V +V+D+ + + + Sbjct: 221 VHNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDATQGVTEQDAKV 280 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 +R +I+++NK D ++ Sbjct: 281 AGIAHERGKGVIIVVNKWDAIE 302 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G K+SIV TR + VS + +DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVSWLDKDFTLIDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD M + I +D++ + D + L V+ + ++ +RS + +IL++NK+D Sbjct: 65 SKDIILSQMREQAQIAIDTSDVIIFITDVKQGL-VDSDSKVADMLRRSGKPVILVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + I +SA+ G D+L+ + P Sbjct: 124 NFD-KYMADTYEFYN--LGIGDPVPISASSRLGLGDMLDKVIEHFP 166 >gi|60680664|ref|YP_210808.1| tRNA modification GTPase TrmE [Bacteroides fragilis NCTC 9343] gi|81316267|sp|Q5LG80|MNME_BACFN RecName: Full=tRNA modification GTPase mnmE gi|60492098|emb|CAH06861.1| putative tRNA modification GTPase [Bacteroides fragilis NCTC 9343] Length = 465 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETS 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNKIDC 142 D+ L I ++ + A+IV ++DS + + L +I R +LIL+ NK++ Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMIDSADAIS-QLTLLSDKILPRCEHKQLILVFNKVEL 341 Query: 143 VK 144 + Sbjct: 342 IN 343 >gi|238793137|ref|ZP_04636765.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909] gi|238727510|gb|EEQ19036.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909] Length = 454 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 279 DEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|301162191|emb|CBW21736.1| putative tRNA modification GTPase [Bacteroides fragilis 638R] Length = 465 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETS 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNKIDC 142 D+ L I ++ + A+IV ++DS + + L +I R +LIL+ NK++ Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMIDSADAIS-QLTLLSDKILPRCEHKQLILVFNKVEL 341 Query: 143 VK 144 + Sbjct: 342 IN 343 >gi|78187867|ref|YP_375910.1| tRNA modification GTPase TrmE [Chlorobium luteolum DSM 273] gi|123582460|sp|Q3B1B4|MNME_PELLD RecName: Full=tRNA modification GTPase mnmE gi|78167769|gb|ABB24867.1| tRNA modification GTPase trmE [Chlorobium luteolum DSM 273] Length = 473 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKSTL+N+ +G + SIV+H TTR + ++ DT G+ +++ Sbjct: 235 IAGRPNAGKSTLLNKLLGEERSIVSHMPGTTRDYIEECFVYDKTMFRLTDTAGLRESEED 294 Query: 87 YHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 I S+ I AD++ ++D RE V+ L +R+IL+ NK D Sbjct: 295 VEHEGIERSYRKISEADLILYMLDVSGEGFREEAVSAAALCA--GHPEARMILLANKTDL 352 Query: 143 VKPERL 148 VK L Sbjct: 353 VKDSAL 358 >gi|20809125|ref|NP_624296.1| tRNA modification GTPase TrmE [Thermoanaerobacter tengcongensis MB4] gi|25009498|sp|Q8R6K8|MNME_THETN RecName: Full=tRNA modification GTPase mnmE gi|20517805|gb|AAM25900.1| predicted GTPase [Thermoanaerobacter tengcongensis MB4] Length = 460 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ ++ K I +DT G Sbjct: 220 REGLKTAIIGKPNVGKSSLLNALLKQNRAIVTDIPGTTRDVIEEYMNIKGIPIKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + + K+ + S + AD++ V+D+ R+L +++ ++ ++ +I +LNK Sbjct: 280 IRHTDELVEKIGVEKSKEVLAEADLILFVLDASRDLTKEDYEIFDILSGKN--IIFVLNK 337 Query: 140 IDCVKPERLLEQ 151 +D P+++ E+ Sbjct: 338 VDL--PKKIDEE 347 >gi|29349244|ref|NP_812747.1| GTP-binding protein EngA [Bacteroides thetaiotaomicron VPI-5482] gi|253573091|ref|ZP_04850482.1| GTP-binding protein engA [Bacteroides sp. 1_1_6] gi|298384785|ref|ZP_06994344.1| ribosome-associated GTPase EngA [Bacteroides sp. 1_1_14] gi|37999664|sp|Q8A135|DER_BACTN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29341152|gb|AAO78941.1| putative phosphoglycerate dehydrogenase [Bacteroides thetaiotaomicron VPI-5482] gi|251837314|gb|EES65414.1| GTP-binding protein engA [Bacteroides sp. 1_1_6] gi|298261929|gb|EFI04794.1| ribosome-associated GTPase EngA [Bacteroides sp. 1_1_14] Length = 437 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S +I++AD+ L++D+ R ++ ++L I K L++++NK Sbjct: 239 VNEDLEYYSVV--RSIRSIENADVCILMLDATRGVESQDLNILSLIQKNQKGLVVVINKW 296 Query: 141 DCVK 144 D ++ Sbjct: 297 DLIE 300 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 11/167 (6%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 NNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILIL 137 N+ D + + + + ++ AD++ VVD +L + + +L+ + +S +I++ Sbjct: 62 VNSDDIFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVATILR---RANSPVIMVA 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 NK D L A KL + + +SA G G D+++ + S Sbjct: 119 NKTDN---NELQYNAPEFYKL-GLGDPYCISAITGSGTGDLMDLIVS 161 >gi|319946441|ref|ZP_08020678.1| ribosome-associated GTPase EngA [Streptococcus australis ATCC 700641] gi|319747409|gb|EFV99665.1| ribosome-associated GTPase EngA [Streptococcus australis ATCC 700641] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATAEWLNHQFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + + + + + VS+ G G DVL+ + LP Sbjct: 123 NPEMRTDIYDF--YALGLGEPLPVSSVHGIGTGDVLDAIVENLP 164 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDAEGQEYTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|297170725|gb|ADI21748.1| predicted GTPases [uncultured actinobacterium HF0130_15N16] Length = 442 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKSTL NR +G + S+V TTR + +V + + F+DT G+ Sbjct: 192 VAIVGRPNVGKSTLFNRLIGDERSVVHDMPGTTRDAIDTVVETELGPLRFIDTAGMRRKA 251 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D+ + +R + I AD+ LV+DS + L + + +++++NK Sbjct: 252 RVDDDTEYYSNLR-ALRAIDKADVALLVIDSSEGVTSQDQRLAERVDAAGCPIVILMNKW 310 Query: 141 DCVKPERLLE-QAEIANKLVFIEKT--FMVSATKGHGCDDVLNYLCSTL 186 + V E + ++ +L F+ ++ +SA G G +++ L + + Sbjct: 311 ETVDQESKDDLMFQVGQRLHFLGESPVLRISALTGRGVHRLVSALEAAI 359 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 31/220 (14%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF- 74 + D R V++VG N GKSTL NR +G + +IV K TR R ++ + F Sbjct: 1 MSDLERLPVVSVVGRPNVGKSTLFNRILGRREAIVEEKPGVTRD--RKVLEAEWQGYRFE 58 Query: 75 -LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRS 130 +DT G + + + S I +D++ LVVD E I +L+ K Sbjct: 59 LVDTGGWMPSGNELDDKVSAQSERAISDSDLIVLVVDGTTGVTEEDARIGAILR---KSD 115 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ++L +NKID + +I + L + + VSA D+L+ + S+ Sbjct: 116 VAVLLAVNKIDSNQ-----RDVDIWDFLSLGLGEPMGVSALHSRNTGDLLDSIVSS---- 166 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCV 229 LP +F E T+E + + +EIP + V Sbjct: 167 -----------LPAINFDNETTKEIMANPIEEEIPGVAIV 195 >gi|171061051|ref|YP_001793400.1| tRNA modification GTPase TrmE [Leptothrix cholodnii SP-6] gi|205415776|sp|B1Y0F6|MNME_LEPCP RecName: Full=tRNA modification GTPase mnmE gi|170778496|gb|ACB36635.1| tRNA modification GTPase TrmE [Leptothrix cholodnii SP-6] Length = 479 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 14/157 (8%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G + E + D +R G V + G NAGKS+L+N GA+++IVT T Sbjct: 205 GRLARLAERLAGLLDTARQGALLREGLRVVIAGQPNAGKSSLLNALAGAELAIVTPIPGT 264 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFN---AKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 TR + + + + +DT G+ + A D ++ I SW I AD V L+ D R Sbjct: 265 TRDKISETIQIEGVPVHVIDTAGLRSDEQAGDEVERIGISRSWQAIAEADAVLLLHDLTR 324 Query: 114 ELKVNIHDLLKEIAKR---SSRLILILNKIDCVKPER 147 E + IA+R LI + NK D PE+ Sbjct: 325 EHEPAYSAADTAIAQRLPADVGLIHVHNKADAA-PEQ 360 >gi|53712463|ref|YP_098455.1| tRNA modification GTPase TrmE [Bacteroides fragilis YCH46] gi|81825067|sp|Q64X55|MNME_BACFR RecName: Full=tRNA modification GTPase mnmE gi|52215328|dbj|BAD47921.1| putative ThdF family GTPase [Bacteroides fragilis YCH46] Length = 465 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + +IV+ TTR ++ V+ F+DT GI Sbjct: 223 VAIIGETNAGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETS 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS--RLILILNKIDC 142 D+ L I ++ + A+IV ++DS + + L +I R +LIL+ NK++ Sbjct: 283 DTIESLGIERTFQKLDQAEIVLWMIDSADAIS-QLTLLSDKILPRCEHKQLILVFNKVEL 341 Query: 143 VK 144 + Sbjct: 342 IN 343 >gi|261378121|ref|ZP_05982694.1| tRNA modification GTPase TrmE [Neisseria cinerea ATCC 14685] gi|269145579|gb|EEZ71997.1| tRNA modification GTPase TrmE [Neisseria cinerea ATCC 14685] Length = 448 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N+R G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLEGLRRSVDEVLANARQGAILREGMNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|224283101|ref|ZP_03646423.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] gi|313140250|ref|ZP_07802443.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] gi|313132760|gb|EFR50377.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] Length = 711 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTLVNR +G + ++V TR V ++ +DT G Sbjct: 275 GVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEA 334 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + ++ +D V LVVD H L ++K + + L +NK+D Sbjct: 335 DVEGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDD 394 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E L AE + + + + +SA G G D+L+ +L Sbjct: 395 GASEYLT--AEFWK--LGMGEPYGISAMHGRGVGDLLDAALDSL 434 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G + ++V TTR V + +F+DT GI Sbjct: 452 VALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWLFIDTAGIKRRL 511 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + D Y L + + I+ +++ ++ DS + + ++ + ++L+ N Sbjct: 512 HKVSGADYYSSLRTQ---AAIERSELALVLFDSSQPISDQDLKVMSQAVDAGRAVVLVFN 568 Query: 139 KIDCV 143 K D + Sbjct: 569 KWDLM 573 >gi|320541143|ref|ZP_08040522.1| putative membrane-associated, 16S rRNA-binding GTPase [Serratia symbiotica str. Tucson] gi|320028794|gb|EFW11094.1| putative membrane-associated, 16S rRNA-binding GTPase [Serratia symbiotica str. Tucson] Length = 76 Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 41/64 (64%) Query: 240 GSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWG 299 G + +I VER QKK+++G G IKTI +EA++++ E+ + VHL L+VKV+ W Sbjct: 1 GGYNVHGLILVEREGQKKMVIGNKGAKIKTIGIEARQDMEEMFDAKVHLELWVKVKSGWA 60 Query: 300 HDPK 303 D + Sbjct: 61 DDER 64 >gi|229543990|ref|ZP_04433049.1| small GTP-binding protein [Bacillus coagulans 36D1] gi|229325129|gb|EEN90805.1| small GTP-binding protein [Bacillus coagulans 36D1] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYSPAEWLTHEFNVIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + + I+ AD++ + S RE + +++ +I RS + ++L +NK+D Sbjct: 65 DEPFLEQIRQQAEIAIQEADVIIFIT-SGREGVTSADEMVAKILYRSKKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + Q L F + F +S G G D+L+ + P Sbjct: 123 -NPE-MRTQIYDFYALGFGDP-FPISGAHGLGLGDLLDAVVKHFP 164 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 4/129 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +G N GKS+L N +G + IV+ TTR V + + ++ V +DT G+ Sbjct: 180 FIGRPNVGKSSLFNAILGEERVIVSDIEGTTRDAVDTVYTYEDQTYVMIDTAGMRKKGKV 239 Query: 87 Y---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 Y K + + I+ +D+VC+V++ ++ + + +I+++NK D V Sbjct: 240 YENTEKYSVLRALRAIERSDVVCVVLNGEEGIREQDKRIAGYAHEAGRGVIIVVNKWDAV 299 Query: 144 -KPERLLEQ 151 K E+ + Q Sbjct: 300 QKDEKTMNQ 308 >gi|310287469|ref|YP_003938727.1| GTP-binding protein [Bifidobacterium bifidum S17] gi|309251405|gb|ADO53153.1| GTP-binding protein [Bifidobacterium bifidum S17] Length = 711 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTLVNR +G + ++V TR V ++ +DT G Sbjct: 275 GVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEA 334 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + ++ +D V LVVD H L ++K + + L +NK+D Sbjct: 335 DVEGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDD 394 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E L AE + + + + +SA G G D+L+ +L Sbjct: 395 GASEYLT--AEFWK--LGMGEPYGISAMHGRGVGDLLDAALDSL 434 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G + ++V TTR V + +F+DT GI Sbjct: 452 VALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWLFIDTAGIKRRL 511 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + D Y L + + I+ +++ ++ DS + + ++ + ++L+ N Sbjct: 512 HKVSGADYYSSLRTQ---AAIERSELALVLFDSSQPISDQDLKVMSQAVDAGRAVVLVFN 568 Query: 139 KIDCV 143 K D + Sbjct: 569 KWDLM 573 >gi|295111068|emb|CBL27818.1| tRNA modification GTPase TrmE [Synergistetes bacterium SGP1] Length = 456 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 8/153 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G N GKS+L+N + +IVT TTR I+ V+ + I +DT G+ Sbjct: 223 VVISGRPNVGKSSLLNALLKQSRAIVTAVPGTTRDIIEETVTYRGIPIRLVDTAGLRVPS 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D I + + +K ADI ++D L+ D ++ + R S I++LNK D Sbjct: 283 DEVEASGIERARAALKQADICLWLLDGSAPLEDADRDYIRSLGTRES--IIVLNKAD--- 337 Query: 145 PERLLEQAEIANKLVFIE-KTFMVSATKGHGCD 176 + L E + + E +T +SA G G D Sbjct: 338 --KALAVTEDDLRAIVPEGRTLAISAKTGEGLD 368 >gi|293400090|ref|ZP_06644236.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306490|gb|EFE47733.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 443 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+L+N + +IVT TTR IV G + + +DT GI +D Sbjct: 223 AIIGKPNVGKSSLLNALLEEDKAIVTEIAGTTRDIVEGHIHLGGLTLNLIDTAGIRETED 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ I S I+ A ++ LV+D+ R L L++ ++ I++ NK D Sbjct: 283 VVEKIGIERSMKAIEDAQLIILVLDASRPLDEEDQQLMQMTENKTR--IIVYNKKD 336 >gi|218133163|ref|ZP_03461967.1| hypothetical protein BACPEC_01025 [Bacteroides pectinophilus ATCC 43243] gi|217992036|gb|EEC58040.1| hypothetical protein BACPEC_01025 [Bacteroides pectinophilus ATCC 43243] Length = 437 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 A+VG TNAGKSTL+NR A V T R +V +S+++ DT G F K Sbjct: 211 AAIVGYTNAGKSTLLNRLTDADVLSEDKLFATLDPTTRELVLTDKSRVLLTDTVG-FIRK 269 Query: 85 DSYHKL-MIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 +H + R + ++ADI+ VVD+ R++++ ++D L+E+ +I + N Sbjct: 270 LPHHLIDAFRSTLEEARYADIIVHVVDASNDDMERQMEI-VYDTLQELEVGDKPVITLFN 328 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 K D + + + + +KT +SA G G D+ Sbjct: 329 KCDMLD----MTDSSAKPRDFKADKTVYISAKTGQGLDE 363 >gi|122702577|emb|CAL88478.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I ++ TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122702313|emb|CAL88347.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|24380270|ref|NP_722225.1| GTP-binding protein EngA [Streptococcus mutans UA159] gi|37999686|sp|Q8DS90|DER_STRMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24378281|gb|AAN59531.1|AE015016_15 phosphoglycerate dehydrogenase [Streptococcus mutans UA159] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS L NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + +I R+ + +IL +NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SAKEGITDADEYVAKILYRTHKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + A + + + VS+ G G DVL+ + LP S+D I Sbjct: 123 -NPE--MRSAIYDFYALGLGDPYPVSSAHGIGTGDVLDAIVDNLPTEAQEESSDII 175 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 18/175 (10%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + +++E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +DIV +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVVVVN 294 Query: 139 KIDCVKPE-RLLEQ--AEIANKLVFIEKT---FMVSATKG--HGCDDVLNYLCST 185 K D +K + R + Q A+I + +I F+ + TK H DV+ + + Sbjct: 295 KWDAIKKDNRTVAQWEADIRDNFQYIPYAPIVFVSAVTKQRLHKLPDVIKQVSQS 349 >gi|298207544|ref|YP_003715723.1| GTP-binding protein EngA [Croceibacter atlanticus HTCC2559] gi|83850180|gb|EAP88048.1| GTP-binding protein EngA [Croceibacter atlanticus HTCC2559] Length = 434 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 5/167 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR + + +I TR G + +DT G + Sbjct: 2 SAIVAIVGRPNVGKSTFFNRMIQRREAITDAISGVTRDRHYGKADWNGKEFTLIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + + I AD++ +VD + D+ K + + + ++L++NK+ Sbjct: 62 VGSDDIFEQEIDKQVELAIDEADVILFMVDVTSGITGMDEDVAKLLRRSNKPMMLVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D ER + E N + + + + + G G D+L+ L LP Sbjct: 122 DNA--ERHADAVEFYN--LGLGEYHAIGSMNGAGTGDLLDELVKILP 164 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRKTK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I+HAD+ LV+D+ R + ++ + +++++NK D Sbjct: 238 VKEDLEFYSVMRSVRAIEHADVCLLVMDATRGFDNQVQNIFWLAERNRKGIVILVNKWDL 297 Query: 143 VK 144 V+ Sbjct: 298 VE 299 >gi|290579757|ref|YP_003484149.1| phosphoglycerate dehydrogenase [Streptococcus mutans NN2025] gi|254996656|dbj|BAH87257.1| phosphoglycerate dehydrogenase [Streptococcus mutans NN2025] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS L NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + +I R+ + +IL +NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SAKEGITDADEYVAKILYRTHKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + A + + + VS+ G G DVL+ + LP S+D I Sbjct: 123 -NPE--MRSAIYDFYALGLGDPYPVSSAHGIGTGDVLDAIVDNLPTEAQEESSDII 175 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 18/175 (10%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + +++E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +DIV +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVVVVN 294 Query: 139 KIDCVKPE-RLLEQ--AEIANKLVFIEKT---FMVSATKG--HGCDDVLNYLCST 185 K D +K + R + Q A+I + +I F+ + TK H DV+ + + Sbjct: 295 KWDAIKKDNRTVAQWEADIRDNFQYIPYAPIVFVSAVTKQRLHKLPDVIKQVSQS 349 >gi|212634303|ref|YP_002310828.1| GTP-binding protein EngA [Shewanella piezotolerans WP3] gi|226741196|sp|B8CKR5|DER_SHEPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|212555787|gb|ACJ28241.1| GTP-binding protein EngA [Shewanella piezotolerans WP3] Length = 490 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NK+D + Sbjct: 64 EEGIETRMAEQSLAAIEEADVVLFMTDARAGLTAADLAIAQHLRSREKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + AE + + + + + ++A +G G +++ Y LAP+ Sbjct: 124 DADSAC--AEFWS--LGLGEVYQMAAAQGRGVTNMIEY-----SLAPYA 163 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + + V +DT G+ Sbjct: 202 LAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMEREGREYVLIDTAGVRRRS 261 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ ++V L++D+ + LL L++ +NK D Sbjct: 262 KVHETVEKFSVIKTLKAVEDCNVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNKWD 321 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + ++E+ +L FI+ + +SA G G Sbjct: 322 GIDQEVKDRVKSELDRRLGFIDFARIHFISALHGTGV 358 >gi|122702133|emb|CAL88257.1| GTPase [Helicobacter pylori] gi|122702141|emb|CAL88261.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILDTLNL 168 >gi|122700665|emb|CAL87921.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER+ + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERIYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|78044593|ref|YP_358878.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans Z-2901] gi|123577255|sp|Q3AG56|MNME_CARHZ RecName: Full=tRNA modification GTPase mnmE gi|77996708|gb|ABB15607.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans Z-2901] Length = 461 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 21 RSGCVALV-GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++ G N GKS+L+N + K +IVT TTR ++ ++ K + +DT G Sbjct: 220 REGITAVIAGKPNVGKSSLLNALLRKKRAIVTDIPGTTRDVIEDYLNLKGIPVKIVDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D KL + + + AD+ VVD + + +L I K S +L++NK Sbjct: 280 IRETEDLVEKLGVEKTREYLNQADVTLFVVDVSIGIDEDDEKILSLINKDKS--LLVINK 337 Query: 140 IDCVKPERLLEQ 151 ID ++ + EQ Sbjct: 338 IDLLQGKVNFEQ 349 >gi|89095338|ref|ZP_01168256.1| GTP-binding protein EngA [Oceanospirillum sp. MED92] gi|89080413|gb|EAR59667.1| GTP-binding protein EngA [Oceanospirillum sp. MED92] Length = 479 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 10/185 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A+VG N GKSTLVNR +G +V K TTR V + +DT G+ Sbjct: 184 IAVVGRPNVGKSTLVNRMLGEDRVVVFDKAGTTRDSVYIPYVRDDKNYTLIDTAGVRRRK 243 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N ++ K I + + A +V V+D+ + +L + L++ LNK D Sbjct: 244 NITEAAEKFSIVKTLQAVNDAHVVVFVIDAREGVTEQDMHMLSFVIDTGRSLVIALNKWD 303 Query: 142 CVKPE---RLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + E R+ EQ E KL F E M +SA G ++ + + A +S Sbjct: 304 GMNGEEKARVKEQVE--RKLEFAEFADMHFISALHGSNVGNMYDSVDEAYEYAMAKWSTS 361 Query: 197 QISDL 201 +++ L Sbjct: 362 KLTRL 366 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 +ALVG N GKSTL NR ++ ++V TR G ++ +E + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRKYGEGRLANEEQDYIVVDTGGIT 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSR-LILILNK 139 + M + S + AD+V +VD +N D ++ +RS + L++NK Sbjct: 64 GDEQGIDYEMAKQSLQAVDEADVVLFIVDGR--AGINPADEMIANYLRRSEKPFYLVVNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIE----KTFMVSATKGHGC 175 D + P+ ++ F E + F ++A+ G G Sbjct: 122 TDGLNPDIVVAD--------FYELGFGQPFPIAASHGRGV 153 >gi|315585839|gb|ADU40220.1| tRNA modification GTPase TrmE [Helicobacter pylori 35A] Length = 450 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DIV V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|262371654|ref|ZP_06064933.1| ribosome-associated GTPase EngA [Acinetobacter junii SH205] gi|262311679|gb|EEY92764.1| ribosome-associated GTPase EngA [Acinetobacter junii SH205] Length = 469 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + +DT GI Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGEN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDSYMAEQSKTAIHEADIIIFVVDARAGLLASDEQIARELRTLGKKVYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPMQVAASHGRGVQQMLEEVLAEVP 163 Score = 38.9 bits (89), Expect = 0.93, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 12/184 (6%) Query: 19 NSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 N +G +A++G N GKSTLVNR +G + + + TTR + Q +DT Sbjct: 172 NKNTGLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDT 231 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ + K I + +K A +V +VVD+ + L+ + ++ Sbjct: 232 AGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMV 291 Query: 135 LILNKID-CVKPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL-----NYLCSTL 186 + +NK D + +R + ++ + FI K ++SA G G ++ Y S L Sbjct: 292 IAINKWDNMTEYDRKQCKLDVERRFDFIPWAKIHLISALHGTGVGELYPSIHRAYESSNL 351 Query: 187 PLAP 190 ++P Sbjct: 352 KVSP 355 >gi|172039509|ref|YP_001806010.1| tRNA modification GTPase TrmE [Cyanothece sp. ATCC 51142] gi|171700963|gb|ACB53944.1| tRNA modification GTPase [Cyanothece sp. ATCC 51142] Length = 460 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + + +IVT TTR +V + I LDT G Sbjct: 223 RNGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S AD+V L +D+ ++ + I R +IL++NK Sbjct: 283 IRQTTDQVEKIGVERSRLAASQADLVLLTIDATVGWTSQDSEIYQPI--RHLPVILVINK 340 Query: 140 IDCVKP 145 ID P Sbjct: 341 IDLATP 346 >gi|6681650|dbj|BAA88823.1| phosphoglycerate dehydrogenase [Streptococcus mutans] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 6/176 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS L NR G ++SIV TR + Q +DT GI + Sbjct: 5 TVAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + +I R+ + +IL +NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SAKEGITDADEYVAKILYRTHKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE + A + + + VS+ G G DVL+ + LP S+D I Sbjct: 123 -NPE--MRSAIYDFYALGLGDPYPVSSAHGIGTGDVLDAIVDNLPAEAQEESSDII 175 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + +++E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +DIV +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVVVVN 294 Query: 139 KIDCVK 144 K D +K Sbjct: 295 KWDAIK 300 >gi|312143875|ref|YP_003995321.1| ribosome-associated GTPase EngA [Halanaerobium sp. 'sapolanicus'] gi|311904526|gb|ADQ14967.1| ribosome-associated GTPase EngA [Halanaerobium sp. 'sapolanicus'] Length = 438 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 VA+VG N GKSTL NR VG + +IV + TR + G + +DT GI Sbjct: 4 ATVAIVGRPNVGKSTLFNRLVGGRRAIVEGEPNVTRDRIYGEAEWLDRTFNVIDTGGIVP 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K I+ ++ AD++ VVDS + ++ + + + + ++L++NK+ Sbjct: 64 RDSDEIKNKIKYQAELAMEEADVILFVVDSRTGMTGIDQEIAQLLYRTNKEVLLVVNKV- 122 Query: 142 CVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E Q EI+ + + ++SA G ++L + + LP Sbjct: 123 ----EDFSNQQEISWEFYSLGFGDPILISAEHGKNTGELLEKISAELP 166 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 16/178 (8%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D + +A++G N GKS+L+N VG IV+ TTR V ++ K+ + F+D Sbjct: 172 EDKREAINIAVIGKPNVGKSSLINHLVGENRVIVSDMPGTTRDAVDTLIEWKDIKFNFID 231 Query: 77 TPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KR 129 T G+ K+S + ++ +D V +++D+ + + D K+IA Sbjct: 232 TAGLRRKSRVKESIEYYSNLRALKSVDRSDAVLMMIDATK----GVSDQDKKIAGYAHDE 287 Query: 130 SSRLILILNKIDCVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +++ +NK D +K + R ++ K + +SA G D++L+ L Sbjct: 288 GKAMVIAINKWDLMKKDSKTMKRYTDEVYYELKFLNYVPITYISALTGERIDEMLSLL 345 >gi|238759577|ref|ZP_04620739.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236] gi|238702236|gb|EEP94791.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236] Length = 454 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAG 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W+ I+ AD V +VD Sbjct: 279 DEVERIGIERAWNEIEQADRVLFMVDG 305 >gi|163731746|ref|ZP_02139193.1| GTP-binding protein HflX, putative [Roseobacter litoralis Och 149] gi|161395200|gb|EDQ19522.1| GTP-binding protein HflX, putative [Roseobacter litoralis Och 149] Length = 432 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 8/167 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA V T +R + +++ DT G + Sbjct: 214 IALVGYTNAGKSTLFNHLTGADVMAKDMLFATLDPTMRRLRLPDGPEVILSDTVGFISEL 273 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKV---NIHDLLKEIAKRSSRLIL-ILNK 139 + R + + AD++C V D SH E ++ D++ + R I NK Sbjct: 274 PTELVAAFRATLEEVLAADVICHVRDISHPETDAQAKDVQDIMTTLGVEDDRPAFEIWNK 333 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +D + E A++ + F +SA G G D +L + TL Sbjct: 334 LDLLSEEDADAMRARADRDPAV---FAISALSGEGLDGLLEAITQTL 377 >gi|122701603|emb|CAL88191.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ++ A + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILNALNLNP 170 >gi|122701397|emb|CAL88088.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPGDEDLKLFREVFKTNPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + + K+F +S + G +++ + STL L Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLNL 168 >gi|116494866|ref|YP_806600.1| GTP-binding protein EngA [Lactobacillus casei ATCC 334] gi|122263716|sp|Q039G4|DER_LACC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116105016|gb|ABJ70158.1| Predicted GTPase [Lactobacillus casei ATCC 334] Length = 435 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR +G +VSIV TR + G + +DT GI Sbjct: 5 TLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ + D + + + + +I R+ + ++L +NK+D Sbjct: 65 DEPFLAQIKDQAEIAIDEADVILFLADIESGV-TDADERVAQILYRAKKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PER + + + L F E + +S T G G DVL+ + + P Sbjct: 123 -NPERRQDIYDFYS-LGFGEP-YPLSGTHGIGLGDVLDAVLAAFP 164 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G IV+ TTR + + +DT GI Sbjct: 178 SLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKRGK 237 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I +D+V V+++ ++ + + +I+++NK D Sbjct: 238 VYENTEKYAVMRALRAIDRSDVVLFVINAEEGIREQDKKVAGYAHEAGRGIIIVVNKWDT 297 Query: 143 VK 144 V+ Sbjct: 298 VE 299 >gi|311064384|ref|YP_003971109.1| GTP-binding protein [Bifidobacterium bifidum PRL2010] gi|310866703|gb|ADP36072.1| GTP-binding protein [Bifidobacterium bifidum PRL2010] Length = 711 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTLVNR +G + ++V TR V ++ +DT G Sbjct: 275 GVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEA 334 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + ++ +D V LVVD H L ++K + + L +NK+D Sbjct: 335 DVEGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDD 394 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E L AE + + + + +SA G G D+L+ +L Sbjct: 395 GASEYLT--AEFWK--LGMGEPYGISAMHGRGVGDLLDAALDSL 434 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G + ++V TTR V + +F+DT GI Sbjct: 452 VALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWLFIDTAGIKRRL 511 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + D Y L + + I+ +++ ++ DS + + ++ + ++L+ N Sbjct: 512 HKVSGADYYSSLRTQ---AAIERSELALVLFDSSQPISDQDLKVMSQAVDAGRAVVLVFN 568 Query: 139 KIDCV 143 K D + Sbjct: 569 KWDLM 573 >gi|310659189|ref|YP_003936910.1| GTPase involved in ribosome synthesis and maintenance [Clostridium sticklandii DSM 519] gi|308825967|emb|CBH22005.1| GTPase involved in ribosome synthesis and maintenance [Clostridium sticklandii] Length = 438 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 11/127 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKS+++NR +G + IV+ TTR + + + +F+DT GI Sbjct: 178 VAIVGKPNAGKSSILNRLIGEERVIVSPIAGTTRDAIDTYIEMDGKKYLFIDTAGIRRKS 237 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILIL 137 Y + +IR ++++++ AD+V V+D+ E I L + K S I+++ Sbjct: 238 KVYENIEKYSVIR-AYASVEKADVVLTVIDATEGISEQDSKIAGLAHDAGKAS---IVVV 293 Query: 138 NKIDCVK 144 NK D ++ Sbjct: 294 NKWDLIE 300 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR G +++IV TR + +DT GI + Sbjct: 4 IVAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRIYAQAEWVSKHFTIIDTGGIEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +++ K M + + + A ++ VVD L + D+ + K ++L++NK+D Sbjct: 64 SEELIPKKMRQQAELAMDMAQVILFVVDGKAGLTPSDRDVALMLLKTKKPVLLVVNKVDN 123 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + E+ + VS++ G G D+L+ + P Sbjct: 124 KNLPDDFYDFYELG-----FGEPIPVSSSIGLGTGDLLDEVVKNFP 164 >gi|310827223|ref|YP_003959580.1| hypothetical protein ELI_1631 [Eubacterium limosum KIST612] gi|308738957|gb|ADO36617.1| hypothetical protein ELI_1631 [Eubacterium limosum KIST612] Length = 439 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N+ VG +++IV TR + + +DT GI + Sbjct: 5 IVAVVGRPNVGKSTLFNKLVGERIAIVEDTPGVTRDRIIADAEWQNHHFTLIDTGGIEPH 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD M + I AD++ L+VD + + ++ I K S ++L +NK+D Sbjct: 65 TKDDILLQMRVQAELAIDMADLIVLLVDGREGMTASDLEVANMIRKHSKNVLLAVNKVDS 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + E + E N + I + +SA +G G D L+ Sbjct: 125 QQLENNI--FEFYN--LGIGEPIAISAEQGLGLGDFLD 158 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKSTL+N+ VG IV+ TTR + V +DT G+ K Sbjct: 180 IAVIGKPNAGKSTLINKMVGHDRLIVSDVPGTTRDAIDTEVRFNGRDYTLIDTAGLRKKK 239 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y + I + + + +D+V +++D + + + RS I+I+NK D Sbjct: 240 KIYEDIERYSIVRAIAAVDRSDVVLVLIDGEKGVTEQDAKIAGIAHNRSKPSIIIVNKWD 299 Query: 142 CV-KPERLLEQA--EIANKLVFIEKT--FMVSATKGH 173 V K + +++ EI + L FI+ +SA G Sbjct: 300 IVEKDTKTMDKMKREIRDTLSFIDYAPILFISAKTGQ 336 >gi|163846033|ref|YP_001634077.1| GTP-binding proten HflX [Chloroflexus aurantiacus J-10-fl] gi|222523761|ref|YP_002568231.1| GTP-binding proten HflX [Chloroflexus sp. Y-400-fl] gi|163667322|gb|ABY33688.1| GTP-binding proten HflX [Chloroflexus aurantiacus J-10-fl] gi|222447640|gb|ACM51906.1| GTP-binding proten HflX [Chloroflexus sp. Y-400-fl] Length = 445 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 7/184 (3%) Query: 10 NEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 + H++ + R +ALVG TNAGKSTL+N GA V T R ++ Sbjct: 202 HRHRELYRQRRRQTGIPVIALVGYTNAGKSTLLNAMTGADVLAEDKLFATLDPTTRQVLL 261 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHR---ELKVNIHDL 122 + DT G R + I+ AD++ VVD +HR E + Sbjct: 262 PGNIVALMTDTVGFIQKLPPQLVAAFRATLEEIEEADLLLHVVDVTHRNAQEHAQTVEQT 321 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L+E+ ++ +LNKID ++ + +IA ++ VSA +G G + + Sbjct: 322 LRELGVDHKPVLTVLNKIDLLEGATAEDVGQIAAEMGLPTDIVAVSAQRGWGLQTLGERI 381 Query: 183 CSTL 186 + L Sbjct: 382 VAML 385 >gi|148653556|ref|YP_001280649.1| GTP-binding protein EngA [Psychrobacter sp. PRwf-1] gi|172048545|sp|A5WGA8|DER_PSYWF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148572640|gb|ABQ94699.1| small GTP-binding protein [Psychrobacter sp. PRwf-1] Length = 473 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKST+ N+ + ++V TR G + V +DT GI A Sbjct: 6 VVALIGRPNVGKSTIFNQMTKTRQALVADLSGLTRDRQYGDATYNNKSFVVIDTGGIGEA 65 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D S M S + I ADI+ VVD+ + ++ K + + L+ NKI Sbjct: 66 DDGRGSIDDYMSAQSHTAIHEADILVFVVDARAGMIGADAEIGKMLHTLGKPVYLVANKI 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D V + A + + + + ++A+ G G ++L+ L + +P Sbjct: 126 DGVH-----DAAPAEFYALGLGEPYPMTASHGRGIANLLDDLTADMP 167 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 7/164 (4%) Query: 16 VQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 V++ + G +A++G N GKSTLVNR +G + +V TTR + V Sbjct: 170 VEEEDQGGLKLAIIGRPNVGKSTLVNRMLGEERVVVYDMPGTTRDSIYIPFERNGKNYVL 229 Query: 75 LDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +DT G+ + K + + IK A++V V+D+ + +L Sbjct: 230 IDTAGVRRRGRIDEKVEKFSVIKALQAIKDANVVVAVIDAQEGIVDQDLHMLGYALDAGR 289 Query: 132 RLILILNKIDCVKPERL-LEQAEIANKLVFIE--KTFMVSATKG 172 +++ +NK D + ++ + + E+ + FI K +SA G Sbjct: 290 AMVVAINKWDGLSEDKKEMIRIELDRRFNFIPYVKVHFISALHG 333 >gi|74316616|ref|YP_314356.1| GTP-binding protein EngA [Thiobacillus denitrificans ATCC 25259] gi|123773049|sp|Q3SL66|DER_THIDA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|74056111|gb|AAZ96551.1| GTP-binding protein [Thiobacillus denitrificans ATCC 25259] Length = 469 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG N GKSTLVN VGA+ I + TTR + V +DT G+ Sbjct: 178 IALVGRPNVGKSTLVNALVGAERVIAFDQPGTTRDSIYVDFERGGKPYVLIDTAGVRRRG 237 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + L + + L++ +NK D Sbjct: 238 KVFETVEKFSVIKTLQAIEDANVVVLVLDARENISEQDAHLAGFVLETGRALVVAINKWD 297 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + E+ + + +I KL F++ + +SA K G +++L Sbjct: 298 GLSAEQRDDVKRDIGRKLAFLDFARFNYISALKAKGLENLL 338 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 + LVG N GKSTL NR G + ++V TR RG + K +V DT G+ Sbjct: 4 TLVLVGRPNVGKSTLFNRLTGTRDALVHDLPGMTRDRHYGRGRIGGKPYLVV--DTGGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 KD M R + I AD + +VD+ + + + + +S ++L +NK Sbjct: 62 PVVKDGILAEMARQTLQAIDEADAIIFMVDARAGVTPQDKVIADRLRRVTSPVLLAVNKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + R + AE + + + +S G G D++ + P Sbjct: 122 EGMN--RAVVTAEFHE--LGLGEPLAISGAHGDGIADLVAEALAPFP 164 >gi|302872910|ref|YP_003841546.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis OB47] gi|302575769|gb|ADL43560.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis OB47] Length = 455 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG +VG N GKS+L+NR + + +IVT TTR ++ ++ + I+ DT G Sbjct: 218 KSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +D K+ + + +I+ AD+V +V+S L+ ++ ++ + I + R ++++NK Sbjct: 278 VRRTEDVVEKIGVERTLKSIERADLVLFMVESSGILQEDL-EIFETI--KDKRFVVLVNK 334 Query: 140 ID 141 ID Sbjct: 335 ID 336 >gi|297623423|ref|YP_003704857.1| tRNA modification GTPase TrmE [Truepera radiovictrix DSM 17093] gi|297164603|gb|ADI14314.1| tRNA modification GTPase TrmE [Truepera radiovictrix DSM 17093] Length = 455 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R +AL+G NAGKS+L+N +G + SIV+ TTR + V + +DT GI Sbjct: 222 RGARLALIGRPNAGKSSLLNALLGYRRSIVSSTPGTTRDYLEAPVDILGVPVTAVDTAGI 281 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D+ + + +HAD+ L++DS L + L+ E++ +RL+++ +K Sbjct: 282 RDTGDAVEASGVEAAKEIAEHADLGLLLLDSSTPLAPDDRALVGELSP--ARLLVVASKS 339 Query: 141 D 141 D Sbjct: 340 D 340 >gi|289662674|ref|ZP_06484255.1| GTP-binding protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669638|ref|ZP_06490713.1| GTP-binding protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 439 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA+ + T VR I S I DT G + Sbjct: 201 IALVGYTNAGKSTLFNALTGAEAYVADQLFATLDPTVRRIALPGGSAI-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ +VD+ L+ + + ++L+ + +L+ N Sbjct: 258 DLPHELVAAFRSTLSEARDADLLLHIVDAADPLREERILQVDEVLQAVGAGDLPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID ++ + A+ + VSA G G +++ + L L L Sbjct: 318 KIDKIEGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQRLDL 367 >gi|260428010|ref|ZP_05781989.1| ribosome-associated GTPase EngA [Citreicella sp. SE45] gi|260422502|gb|EEX15753.1| ribosome-associated GTPase EngA [Citreicella sp. SE45] Length = 487 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ A Sbjct: 4 SLAIVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGEGKLGDLRFTVIDTAGLEEA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 D S M RL+ + AD+ ++D+ + + + KRS +IL NK Sbjct: 64 TDESLQGRMRRLTERAVDMADVCLFMIDARVGVTPTDEVFAEILRKRSKHVILAANK 120 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 22/188 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG NAGKSTL+N+ +G + + TR + + + + DT G+ Sbjct: 204 IAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISVRLDWDGTPMRIFDTAGMRKRA 263 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 264 KIQEKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVVVAVNK 321 Query: 140 IDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 D K E+L + E ++L+ + VSA G G D ++ N S Sbjct: 322 WDVEEHKQEKLRDLKEAFDRLLPQLRGAPLVTVSAKTGRGLDRLNAAILKAWEIWNRRVS 381 Query: 185 TLPLAPWV 192 T L W+ Sbjct: 382 TGQLNRWL 389 >gi|327313587|ref|YP_004329024.1| tRNA modification GTPase TrmE [Prevotella denticola F0289] gi|326945796|gb|AEA21681.1| tRNA modification GTPase TrmE [Prevotella denticola F0289] Length = 510 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 7/121 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TN GKSTL+N + + +IV++ TTR + + F+DT GI + Sbjct: 280 VAIIGKTNVGKSTLLNCLLHEEKAIVSNIHGTTRDTIEDTTEIQGVTFRFIDTAGIRHTD 339 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D +L IR ++ + A IV VVD E ++ + L +E +LI + NK+D Sbjct: 340 DQIEQLGIRRAYEKLDEASIVLWVVDRQPTTEERMEMRHLTEE-----KKLITVFNKMDT 394 Query: 143 V 143 + Sbjct: 395 M 395 >gi|160946385|ref|ZP_02093594.1| hypothetical protein PEPMIC_00345 [Parvimonas micra ATCC 33270] gi|158447501|gb|EDP24496.1| hypothetical protein PEPMIC_00345 [Parvimonas micra ATCC 33270] Length = 441 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 7/182 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 V +VG N GKSTL N+ + +++I TR + + + DT G+ N Sbjct: 5 LVCVVGRPNVGKSTLFNKLINKRIAITEDTPGVTRDRLYQDAEWQNKHFILCDTGGLEPN 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D + + + +++AD++ VVD L ++ + + ++L +NK+D Sbjct: 65 SDDIILQKIKAQADVAMENADVILFVVDGKSGLMDEDREISNYLRRTKKPVVLAVNKVDT 124 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 K P + E E+ E ++SAT+G G D+L+ + P + D+++ + Sbjct: 125 HKMPAEVYEFYELG-----FENLNIISATQGFGLGDLLDEIIKEFPENKYTGEEDEVTKI 179 Query: 202 PM 203 + Sbjct: 180 AL 181 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 8/160 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +AL+G N GKS+L+NR +G + IV+ TTR + V +F DT G+ Sbjct: 179 IALIGKPNVGKSSLMNRILGEERMIVSDIAGTTRDSIDSRVEIDGKTYIFTDTAGLRRKR 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N ++ + + + + ++ +DI L++D+ + ++ +++ LI+ +NK D Sbjct: 239 NITENLERYSVVRTLNAVERSDIAILLIDATEGVTEQDTKVIGFAKEQNKALIIAVNKWD 298 Query: 142 CVKPERLLEQA---EIANKLVFI--EKTFMVSATKGHGCD 176 + + +A +I KL F+ + +S G D Sbjct: 299 LIVKDNKTYKAFEDDIRTKLSFVPYAQLVFISVKTGQRID 338 >gi|194334612|ref|YP_002016472.1| GTP-binding protein EngA [Prosthecochloris aestuarii DSM 271] gi|238693304|sp|B4S433|DER_PROA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194312430|gb|ACF46825.1| small GTP-binding protein [Prosthecochloris aestuarii DSM 271] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 6/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK--ESQIVFLDTPGIFN 82 VALVG N GKSTL NR K +IV TR R I+ + + + +DT G + Sbjct: 5 VALVGRPNVGKSTLFNRITHQKSAIVDSTPGVTRD--RHIMPAEWIGKEFLVMDTGGYCH 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D K M+ + + I AD++ +VD L D+ K + KR + ++ Sbjct: 63 DSDGISKAMLEQTLTAIGEADVIIFLVDVRSGLTYLDLDMAK-LLKRDFNDKPVYFAVNK 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 V+ +L + E K F E F +SA G G D+L+ + + Sbjct: 122 VESPQLAYEGESFRKTGFTEPWF-ISARDGSGVADLLDAVVDSF 164 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 7/141 (4%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K ++ S +A++G N GKS+ VN +G +IV++K TTR + Sbjct: 165 EEKSGQEEEDDSIRLAIIGRPNVGKSSFVNALLGTNRNIVSNKPGTTRDAIDTRFKRNGR 224 Query: 71 QIVFLDTPGI-----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 +IV +DT G+ +A ++ + + I+ D+ +++D+ + L+ +++ Sbjct: 225 EIVLIDTAGLRKRARIDAGIEFYSSL--RTERAIERCDVALVLIDAEQGLEKQDMKIIEM 282 Query: 126 IAKRSSRLILILNKIDCVKPE 146 A+R ++L++NK D ++ + Sbjct: 283 AAERKKGVLLLVNKWDLIEKD 303 >gi|261250646|ref|ZP_05943221.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio orientalis CIP 102891] gi|260939215|gb|EEX95202.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio orientalis CIP 102891] Length = 453 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ I +W I AD V +VD Sbjct: 278 DEVEKIGIERAWDEITQADRVLFMVDG 304 >gi|322421095|ref|YP_004200318.1| ribosome-associated GTPase EngA [Geobacter sp. M18] gi|320127482|gb|ADW15042.1| ribosome-associated GTPase EngA [Geobacter sp. M18] Length = 440 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A+VG N GKSTL NR VG + ++V TR V+ + + +DT G Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVTRFDLPFILVDTGGFEPET 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + M S + AD++ V+D+ L D++ + + + + I+NK+D Sbjct: 65 SDKLLQQMREQSRFAMDEADLILFVMDARDGLTPADRDVVDMLRRINKPVFYIINKVDGE 124 Query: 144 KPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E AN F +++ +SA G D+++ + + LP Sbjct: 125 KQE--------ANSGDFYSLGVDQIHTISAEHNRGVGDLMDEVLAALP 164 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVNR +G + + TTR V + + + +DT GI Sbjct: 178 IAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRKG 237 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+ + + +I+ AD+V +V+++ + + + I ++NK D Sbjct: 238 KTVQKVEKYSVMDALRSIERADVVLIVLNAEEGVTEQDTKIAGYAYEAGRGCIFVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 TVQ 300 >gi|218128437|ref|ZP_03457241.1| hypothetical protein BACEGG_00005 [Bacteroides eggerthii DSM 20697] gi|317475737|ref|ZP_07934996.1| ribosome-associated GTPase EngA [Bacteroides eggerthii 1_2_48FAA] gi|217989328|gb|EEC55641.1| hypothetical protein BACEGG_00005 [Bacteroides eggerthii DSM 20697] gi|316908120|gb|EFV29815.1| ribosome-associated GTPase EngA [Bacteroides eggerthii 1_2_48FAA] Length = 437 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S +I+++D+ L++D+ R ++ ++ I K S L++++NK Sbjct: 239 VNEDLEYYSVI--RSIRSIENSDVCILMLDATRGIESQDLNIFSLIQKNSKGLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 18/189 (9%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILIL 137 N+ D + + + + + AD++ VVD +L + + +L+ K ++L+ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVASILRRAKK---PVLLVA 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D E E + + + + +SA G G D+++ + +D+ Sbjct: 119 NKTD--NNELQYNAPEFYS--LGLGDPYCISAVTGSGTGDLMDLIVENFK-----KESDE 169 Query: 198 I--SDLPMF 204 I D+P F Sbjct: 170 ILDEDIPRF 178 >gi|217033917|ref|ZP_03439341.1| hypothetical protein HP9810_870g49 [Helicobacter pylori 98-10] gi|216943680|gb|EEC23125.1| hypothetical protein HP9810_870g49 [Helicobacter pylori 98-10] Length = 450 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHTLSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DIV V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|183599734|ref|ZP_02961227.1| hypothetical protein PROSTU_03237 [Providencia stuartii ATCC 25827] gi|188021993|gb|EDU60033.1| hypothetical protein PROSTU_03237 [Providencia stuartii ATCC 25827] Length = 490 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 57/126 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + K + R + L+ NK D + Sbjct: 64 EEGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGI 123 Query: 144 KPERLL 149 + ++ Sbjct: 124 DADSVI 129 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 206 LAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 265 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ + LL I L++ +NK D Sbjct: 266 KITETVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNAGRSLVIAVNKWD 325 Query: 142 CVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +KP E + + E+ V + +SA G G ++ Sbjct: 326 GMKPEDREHVKDMLELRLGFVDFARIHFISALHGSGVGNLF 366 >gi|122702655|emb|CAL88517.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISVLIDAILSALNLNP 170 >gi|163795484|ref|ZP_02189450.1| putative gtp-binding protein [alpha proteobacterium BAL199] gi|159179083|gb|EDP63616.1| putative gtp-binding protein [alpha proteobacterium BAL199] Length = 437 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 75/173 (43%), Gaps = 16/173 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR GA V T +R I I+ DT G + Sbjct: 204 VALVGYTNAGKSTLFNRLSGASVVAEDLLFATLDPTMRRIEVPGGRTIILSDTVGFISDL 263 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAK-------RSSRLILI 136 ++ R + + AD+V V D +H + D+ +A RS R++ + Sbjct: 264 PTHLVAAFRATLEEVTEADVVVHVRDIAHPDSNAQKSDVEGVLASLGIDETTRSGRMLEV 323 Query: 137 LNKIDCVKPERLLEQAEIANKLVFI---EKTFMVSATKGHGCDDVLNYLCSTL 186 LNKID RL + IA K E VSA G G D++ + + L Sbjct: 324 LNKID-----RLPDDQRIAVKQRAASGNEPVAAVSAITGEGIDELRSVIAQLL 371 >gi|121606994|ref|YP_984323.1| tRNA modification GTPase TrmE [Polaromonas naphthalenivorans CJ2] gi|205415792|sp|A1VUS4|MNME_POLNA RecName: Full=tRNA modification GTPase mnmE gi|120595963|gb|ABM39402.1| tRNA modification GTPase trmE [Polaromonas naphthalenivorans CJ2] Length = 478 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 24/164 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G N GKS+L+N GA+++IVT TTR V ++ + + +DT G+ A Sbjct: 234 VVIAGQPNVGKSSLLNALAGAELAIVTPVAGTTRDKVSQLIQIEGVPLHVVDTAGLREAL 293 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILIL--- 137 D K+ I+ +W+ I+ AD V + D R E + + + + A+ S L L L Sbjct: 294 DEVEKIGIQRAWTEIESADAVLFLHDLARHDATENPLYAINYIADDARLQSALALKLPKN 353 Query: 138 -------NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 NK D PE LL Q + ++SA G G Sbjct: 354 TAIIDVWNKSDMAGPE-LLRQ---------VNGGVLISAKTGAG 387 >gi|109900608|ref|YP_663863.1| tRNA modification GTPase TrmE [Pseudoalteromonas atlantica T6c] gi|123170439|sp|Q15MS9|MNME_PSEA6 RecName: Full=tRNA modification GTPase mnmE gi|109702889|gb|ABG42809.1| tRNA modification GTPase trmE [Pseudoalteromonas atlantica T6c] Length = 460 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR +++ + + +DT G+ ++ Sbjct: 225 VVIAGRPNAGKSSLLNALAGRDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSS 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LILILNKID 141 D ++ I +W I+ AD V ++DS + + + + E +R + L +I NK D Sbjct: 285 DEVERIGIERAWQEIEQADRVLFMLDSTETHENDPYKIWPEFMRRLPKNMGLTVIRNKAD 344 >gi|262280930|ref|ZP_06058713.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257830|gb|EEY76565.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 469 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + + +DT GI Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGEN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKVYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPLQVAASHGRGVQQMLEDVLVDVP 163 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 15/179 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTLVNR +G + + TTR + Q +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVRRKG 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE--LKVNIHDLLKEIAKRSSRLILILNK 139 + K I + IK A ++ +V+D+ RE ++ ++H L+ + +++ +NK Sbjct: 239 KVDEMIEKFSIVKTLQAIKDAHVIVVVLDA-REGVVEQDLH-LIGYALEAGRAMVIAINK 296 Query: 140 ID-CVKPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL-----NYLCSTLPLAP 190 D + +R + ++ + FI K ++SA G G ++ Y S L ++P Sbjct: 297 WDNMTEYDRKQCKLDVDRRFDFIPWAKVHLISALHGTGVGEMYPTIHRAYDSSHLKVSP 355 >gi|4467679|emb|CAB37791.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKPAQMSDLILYVVDGKSTPSDEDLKLFREVFKTNPNCFLVINKIDT 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + + K+F +S + G +++ + S L L Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|323435972|ref|ZP_01049346.2| GTP-binding protein EngA [Dokdonia donghaensis MED134] gi|321496287|gb|EAQ39318.2| GTP-binding protein EngA [Dokdonia donghaensis MED134] Length = 450 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G + IVT TTR + + + +DT GI Sbjct: 194 AVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDAMDTKYNRYGFEFNLVDTAGIRRKAK 253 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I+HAD+V LVVD+ R + ++ +A+R+ + I+IL NK D Sbjct: 254 VKEDLEFYSVMRSVRAIEHADVVLLVVDATRGFDGQVQNIF-WLAERNRKGIVILVNKWD 312 Query: 142 CVK 144 V+ Sbjct: 313 LVE 315 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 7/168 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR V + +IV TR G + +DT G + Sbjct: 17 STIVAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVIDTGGYV 76 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + D + + + I AD + +VD + + + + + +RS + + L +NK Sbjct: 77 VGSDDIFEAEIDKQVELAIDEADAIIFMVDVEHGI-TGMDEEVANLLRRSKKPIFLAVNK 135 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D K R + E N + + + ++AT G G D+L+ + LP Sbjct: 136 VDNNK--RAADAVEFYN--LGLGDFYTIAATNGSGTGDLLDAVVEALP 179 >gi|218186089|gb|EEC68516.1| hypothetical protein OsI_36791 [Oryza sativa Indica Group] Length = 676 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 92/190 (48%), Gaps = 15/190 (7%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRG 63 E++ F E +D + +A+VG N GKS+++N VG +IV+ TTR +I Sbjct: 366 ELSNFEELDGVEEDGNYIPAIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTE 425 Query: 64 IVSEKESQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV 117 +E + +DT GI +A + L ++ ++ I+ +D+V LVV++ + Sbjct: 426 FTTEDGQKYKLIDTAGIRRRAAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITE 485 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCV-----KPERLLEQAEIANKLVFIEKTFMV--SAT 170 + + + I K ++++NK D + + EQ ++ KL ++ +V SAT Sbjct: 486 QDYKIAERIEKEGKACVIVVNKWDTIPNKNHQSTTYYEQ-DVREKLRILDWAPIVYCSAT 544 Query: 171 KGHGCDDVLN 180 G D +++ Sbjct: 545 HGSSVDKIIS 554 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 40/84 (47%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS L NR VG +IV + TR + G + + + +DT G+ Sbjct: 164 VAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDREFMVIDTGGVITLS 223 Query: 85 DSYHKLMIRLSWSTIKHADIVCLV 108 S +M L+ +T D + L Sbjct: 224 KSQAGVMEELAITTTVGMDGIPLA 247 >gi|122701507|emb|CAL88143.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + + K+F +S + G +++ + S L L Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122701517|emb|CAL88148.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +SA+ G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISASHNRGISTLIDAILNALNL 168 >gi|293363486|ref|ZP_06610242.1| ribosome-associated GTPase EngA [Mycoplasma alligatoris A21JP2] gi|292552835|gb|EFF41589.1| ribosome-associated GTPase EngA [Mycoplasma alligatoris A21JP2] Length = 434 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 6/156 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKST NR +G KVSIV + TR + V Q+ F+DT GI Sbjct: 5 VAIIGKPNVGKSTFFNRLIGRKVSIVYDQPGVTRDRLYENVDWVGKQLKFIDTGGIEIEN 64 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + I+ AD++ + D E+ + ++ + K + +I + NK++ Sbjct: 65 KPFQEQIQIQAKIAIEEADVIIFLFDGTSEITNDDLFIMNILRKSNKHIITVANKLESN- 123 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +Q + + + + F +SA G G +VL+ Sbjct: 124 -----QQFDYSWYKLGSDHIFAISALHGEGVGEVLD 154 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G NAGKS+L+N SIV+ TTR V+ IV + +DT GI Sbjct: 173 LSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKSIVEINGQKYNIIDTAGIMKKS 232 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + ++ AD+ ++VDS ++ ++ + + +++++NK D Sbjct: 233 RLVESVDHYALMRAMDSLNEADLSLIIVDSTSQISHFDSRIIGYALENNKPIVVVINKWD 292 Query: 142 CVKPE 146 ++ E Sbjct: 293 LIEKE 297 >gi|260881015|ref|ZP_05403389.2| ribosome-associated GTPase EngA [Mitsuokella multacida DSM 20544] gi|260850181|gb|EEX70188.1| ribosome-associated GTPase EngA [Mitsuokella multacida DSM 20544] Length = 445 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 5/170 (2%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N VA+VG N GKSTL N+ +VSIV TR + +DT Sbjct: 2 NMSKPIVAIVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLNQHFTMIDTG 61 Query: 79 GI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 GI F+ + K M + + + AD++ +VD L ++ + + +IL + Sbjct: 62 GIEFDESNHILKSMRQQAQLAMDEADVILFLVDGRSGLTTADEEVARLLRSTKKPVILAV 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NKID P+R ++ E N + + +SA+ D+L+ + + P Sbjct: 122 NKIDS--PQRAMDVYEFYN--LGLGDPIPISASNAMNLGDLLDAIVAAFP 167 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 31/147 (21%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS++VN +G + IV+ TTR + ++ ++ +DT G+ Sbjct: 180 SIAVIGRPNVGKSSIVNAILGEERVIVSDVPGTTRDAIDTHFTKDGTKFTLIDTAGMRRR 239 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + S I AD+V +++++ + + + +++++NK Sbjct: 240 GKIDEPVERYSVMRSLRAIDRADVVLMMINAFEGITEQDKKIAGYAHESGKGVVIVVNKW 299 Query: 141 DCVKPER-----LLEQAEIANKLVFIE 162 D + P++ L E+ +KL F++ Sbjct: 300 D-IYPDKDDKSTLRFTDELRDKLGFLQ 325 >gi|115486387|ref|NP_001068337.1| Os11g0638000 [Oryza sativa Japonica Group] gi|113645559|dbj|BAF28700.1| Os11g0638000 [Oryza sativa Japonica Group] Length = 315 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 15/194 (7%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-S 59 M E++ F E +D + +A+VG N GKS+++N VG +IV+ TTR + Sbjct: 1 MVCSELSNFEELDGVEEDGNYIPAIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDA 60 Query: 60 IVRGIVSEKESQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 I +E + +DT GI +A + L ++ ++ I+ +D+V LVV++ Sbjct: 61 IDTEFTTEDGQKYKLIDTAGIRRRAAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMA 120 Query: 114 ELKVNIHDLLKEIAKRSSRLILILNKIDCV-----KPERLLEQAEIANKLVFIEKTFMV- 167 + + + + I K ++++NK D + + EQ ++ KL ++ +V Sbjct: 121 CITEQDYKIAERIEKEGKACVIVVNKWDTIPNKNHQSTTYYEQ-DVREKLRILDWAPIVY 179 Query: 168 -SATKGHGCDDVLN 180 SAT G D +++ Sbjct: 180 CSATHGSSVDKIIS 193 >gi|158320432|ref|YP_001512939.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs] gi|166920096|sp|A8MH56|DER_ALKOO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158140631|gb|ABW18943.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs] Length = 440 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 7/159 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N+ G ++SIV +K TR + Q +DT GI Sbjct: 5 IVAVVGRPNVGKSTLFNKIAGERISIVENKPGVTRDRIYAEAEWLNYQFTLIDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +++ M R + ++ A+++ VVD L D+ + + K +I+ LNK+D Sbjct: 65 SEEIIPAQMRRQAELAMETANVIIFVVDGREGLTSVDRDVAELLRKTKKPVIVTLNKVDT 124 Query: 143 V-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + E E E+ + +SA+ G G D+L+ Sbjct: 125 RHQSEHFYEFYELG-----MGDPIEISASLGLGIGDLLD 158 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 8/175 (4%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D+ Q + VA++G N GKS+L+NR +G + IV+ TTR + ++ + + Sbjct: 167 EDYNQYDDDVIKVAMIGKPNVGKSSLINRILGEERVIVSDIAGTTRDAIDTPFTDGDDRY 226 Query: 73 VFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 V +DT GI +S K I + + ++ +D+ LV+D+ + + + Sbjct: 227 VLIDTAGIRRKSRITESIEKYSIVRAIAAVEKSDVCLLVIDASEGVTEQDKKIAGYSHEN 286 Query: 130 SSRLILILNKIDCV-KPERLLEQ--AEIANKLVFIEKT--FMVSATKGHGCDDVL 179 +++++NK D + K + + EI N+L +I VSA G + +L Sbjct: 287 GKGMVIVVNKWDIIEKDNHTMNEFIKEIRNELTYISYAPIVFVSALTGQRMNKIL 341 >gi|332305588|ref|YP_004433439.1| ribosome-associated GTPase EngA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172917|gb|AEE22171.1| ribosome-associated GTPase EngA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 482 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + Q + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYEGLQFIVVDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S I AD+V +VD+ L + + + K++ + ++ NK+D + Sbjct: 64 EQGIDMAMANQSLMAIDEADVVLFLVDARVGLTGADQGIAEHLRKQNKSVYVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + +E A+ + ++A G G +L + + +PLA Sbjct: 124 DGD-----SESADFFALGLGDVNQIAAAHGRGVTQLLTH--TLMPLA 163 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V + TTR + + + V +DT G+ + Sbjct: 197 LAIVGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSIFIPMERDGREYVLIDTAGVRRRR 256 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K I + I+ A++V LV+D+ + LL + L+L +NK D Sbjct: 257 SISEAVEKFSIVKTLQAIEEANVVLLVIDAQEGITDQDLSLLGFVLNSGRSLVLAVNKWD 316 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKG 172 + + E + E+ +L FI+ + +SA G Sbjct: 317 GLDKDVKDEIKRELDRRLGFIDFARLHFISALHG 350 >gi|296113385|ref|YP_003627323.1| GTP-binding protein EngA [Moraxella catarrhalis RH4] gi|295921079|gb|ADG61430.1| GTP-binding protein EngA [Moraxella catarrhalis RH4] gi|326559230|gb|EGE09661.1| GTP-binding protein EngA [Moraxella catarrhalis 46P47B1] gi|326559869|gb|EGE10269.1| GTP-binding protein EngA [Moraxella catarrhalis 7169] gi|326569645|gb|EGE19697.1| GTP-binding protein EngA [Moraxella catarrhalis BC1] gi|326570126|gb|EGE20171.1| GTP-binding protein EngA [Moraxella catarrhalis BC8] gi|326570864|gb|EGE20888.1| GTP-binding protein EngA [Moraxella catarrhalis BC7] gi|326574414|gb|EGE24356.1| GTP-binding protein EngA [Moraxella catarrhalis 101P30B1] gi|326576405|gb|EGE26314.1| GTP-binding protein EngA [Moraxella catarrhalis O35E] Length = 472 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKSTL N+ ++ ++V TR G + + +DT GI Sbjct: 6 VVALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEM 65 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + M S++ I ADIV VVD+ L ++ + + L+ NK+ Sbjct: 66 DDGSGNIDDYMATQSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKM 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D V E + + + +A+ G G ++L L + +P Sbjct: 126 DGVHEAAYAEFFALG-----FGEPYATAASHGRGVTNLLESLTADMP 167 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +S++ +A++G N GKSTLVNR +G +V TTR + I E+E + V +DT Sbjct: 176 DSKTLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIY-IPFEREGRSYVLIDT 234 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ + K + + IK A++V LV+D+ + +L ++ Sbjct: 235 AGVRRRGRIDEKVEKFSVVKTLQAIKDANVVVLVIDAKEGIVDQDLHMLGYALDAGRAIV 294 Query: 135 LILNKIDCV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + +NK D + + ++ + EI + F+ K ++SA G+G Sbjct: 295 VAINKWDGLSQDQKDFVKIEIDRRFNFVPWVKIHLISALYGNGV 338 >gi|224025980|ref|ZP_03644346.1| hypothetical protein BACCOPRO_02731 [Bacteroides coprophilus DSM 18228] gi|224019216|gb|EEF77214.1| hypothetical protein BACCOPRO_02731 [Bacteroides coprophilus DSM 18228] Length = 437 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 13/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR + +IV + TTR G + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRS-SRLILILNK 139 D + + + + ++ AD++ VVD + DL ++A +RS + +IL+ NK Sbjct: 65 DDVFEEEIRKQVLLAVEEADVILFVVDVMN----GVTDLDAQVAGILRRSKTPVILVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 D E AE + + + F +SA G G D+L+ + S Sbjct: 121 TDS--NELQYNAAEFYS--LGLGDPFCISAMSGSGTGDLLDLVLS 161 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN--- 82 A+VG NAGKS+++N F+G + +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEERNIVTDIAGTTRDSIYTRYDKFGFDFYLVDTAGIRKKNK 238 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++D + +IR S I+ +D+ L++D+ R ++ ++ I + L++++NK D Sbjct: 239 VSEDLEYYSVIR-SIRAIEGSDVCILMLDATRGVEGQDLNIFSLIQRNQKGLVVVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 LVE 300 >gi|193216656|ref|YP_001999898.1| GTP-binding protein EngA [Mycoplasma arthritidis 158L3-1] gi|193001979|gb|ACF07194.1| GTPase protein EngA [Mycoplasma arthritidis 158L3-1] Length = 434 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 5/164 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKST N+ + + +IV + TR + +VS S +DT GI Sbjct: 3 NAVAIIGKPNVGKSTFFNKLINKRKAIVYDRPGVTRDRIYDVVSWAGSTFTLIDTGGITI 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + + + + I A ++ ++D L + + + K + ++IL +NKI+ Sbjct: 63 ENDDFKEQIKIQAQVAIDEASVIVFLIDGRNSLTSEDFFVAELLRKSAKKVILAINKIE- 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + + L F K F +S+ G G D+L+ + S+ Sbjct: 122 ---NNNFDFDPLIYSLGF-NKIFKISSIHGDGLGDLLDEIISSF 161 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 7/127 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+G TN GKSTL+N + SIV+ TTR + + + +DT GI Sbjct: 174 LALLGKTNVGKSTLLNTLSNEERSIVSDIAGTTRDAISSFIKINGEEFEVVDTAGIKRKS 233 Query: 85 ---DSY-HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 DS H +IR + + I+ A++ LV+D+ E+ + H + IA + +I+I+NK Sbjct: 234 KLIDSIEHYSLIR-AHAAIEEANLCLLVLDATDEVS-HFHQNIIGIAYEQKKPMIVIVNK 291 Query: 140 IDCVKPE 146 D ++ + Sbjct: 292 WDKIEKD 298 >gi|167765447|ref|ZP_02437560.1| hypothetical protein BACSTE_03837 [Bacteroides stercoris ATCC 43183] gi|167697075|gb|EDS13654.1| hypothetical protein BACSTE_03837 [Bacteroides stercoris ATCC 43183] Length = 437 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S +I+++D+ L++D+ R ++ ++ I K S L++++NK Sbjct: 239 VNEDLEYYSVI--RSIRSIENSDVCILMLDATRGIESQDLNIFSLIQKNSKGLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 18/189 (9%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILIL 137 N+ D + + + + + AD++ VVD +L + + +L+ K ++L+ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVASILRRTKK---PVLLVA 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D E E + + + + +SA G G D+++ + +D+ Sbjct: 119 NKTD--NNELQYNAPEFYS--LGLGDPYCISAVTGSGTGDLMDLIVENFK-----KESDE 169 Query: 198 I--SDLPMF 204 I D+P F Sbjct: 170 ILDEDIPRF 178 >gi|149911784|ref|ZP_01900388.1| tRNA modification GTPase [Moritella sp. PE36] gi|149805130|gb|EDM65152.1| tRNA modification GTPase [Moritella sp. PE36] Length = 454 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 10/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ ++ Sbjct: 219 VVIAGRPNAGKSSLLNALAGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSP 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I +AD V +VD + ++ + R S L +I NK+D Sbjct: 279 DRVEQIGIERAWQEINNADQVLFMVDGTTTDATDPAEIWPDFIDRLPSSIGLTVIRNKVD 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E L + ++ + F +SA + G D++ ++L Sbjct: 339 LTG-ETLTVSDDQSHPV------FKISAKENLGLDELKDHL 372 >gi|87118473|ref|ZP_01074372.1| GTPase EngA [Marinomonas sp. MED121] gi|86166107|gb|EAQ67373.1| GTPase EngA [Marinomonas sp. MED121] Length = 454 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 10/183 (5%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K + S+ + ++G N GKSTLVNR +G +V TTR V E Sbjct: 168 EAKGQIDIESKGTRIGVIGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYIRNEK 227 Query: 71 QIVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +DT G+ + K++ K I + I+ A++V +V+D H +L ++ + Sbjct: 228 EYTLIDTAGVRRRKHIKEAVEKFSIVKTLKAIQDANVVIVVIDGHEDLVEQDLHMIGYVI 287 Query: 128 KRSSRLILILNK---IDCVKPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYL 182 L++ +NK +D ER+ + E+ +L F+ K +SA G ++ + + Sbjct: 288 DAGRGLVIAVNKWDGLDQYSKERI--KTEVERRLGFVPYAKVHYISALHGTAVGNLYDTI 345 Query: 183 CST 185 T Sbjct: 346 DET 348 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 8/173 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V TR G E + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNQLTRSRDALVADYPGLTRDRKYGDGRIGEHEFIVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M R S I+ AD V +VD L + + + + +++NK D + Sbjct: 64 EMGIDEKMARQSLLAIEEADTVLFLVDGRHGLNPADEMIANHLRRSNKPTFMVVNKTDGI 123 Query: 144 KPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 E +A+ + + ++A+ G G +++ +C LP A V A Sbjct: 124 N-----EDVALADFYSIGLGDLHPIAASHGKGVHKLID-IC-MLPFAEQVQEA 169 >gi|117927030|ref|YP_867647.1| tRNA modification GTPase TrmE [Magnetococcus sp. MC-1] gi|205415778|sp|A0LE48|MNME_MAGSM RecName: Full=tRNA modification GTPase mnmE gi|117610786|gb|ABK46241.1| tRNA modification GTPase trmE [Magnetococcus sp. MC-1] Length = 468 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 17/171 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L N G +IVT TTR + + I+ +DT G+ + Sbjct: 235 LAIVGRPNVGKSSLFNALSGEDRAIVTDLAGTTRDLNESNLEIHGLPILLVDTAGLRESD 294 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNKIDC 142 D ++ I +W ++ AD + V ++ +L V + D LL+ + K + + + NK+D Sbjct: 295 DPVERIGIERAWQRVERADGIVFVAEA--QLGVTLEDKALLQRLPKEKA--LWVWNKLDQ 350 Query: 143 VK---PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++ PE L + E E+ VS G G + V+ ++ + + P Sbjct: 351 LEGALPECLQDWPE--------EQICGVSCHTGEGLESVVAHIVARMEQLP 393 >gi|326575993|gb|EGE25916.1| GTP-binding protein EngA [Moraxella catarrhalis CO72] Length = 472 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKSTL N+ ++ ++V TR G + + +DT GI Sbjct: 6 VVALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEM 65 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + M S++ I ADIV VVD+ L ++ + + L+ NK+ Sbjct: 66 DDGSGNIDDYMATQSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKM 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D V E + + + +A+ G G ++L L + +P Sbjct: 126 DGVHEAAYAEFFALG-----FGEPYATAASHGRGVTNLLESLTADMP 167 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +S++ +A++G N GKSTLVNR +G +V TTR + I E+E + V +DT Sbjct: 176 DSKTLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIY-IPFEREGRSYVLIDT 234 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ + K + + IK A++V +V+D+ + +L ++ Sbjct: 235 AGVRRRGRIDEKVEKFSVVKTLQAIKDANVVMVVIDAKEGIVDQDLHMLGYALDAGRAIV 294 Query: 135 LILNKIDCV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + +NK D + + ++ + EI + F+ K ++SA G+G Sbjct: 295 VAINKWDGLSQDQKDFVKIEIDRRFNFVPWVKIHLISALYGNGV 338 >gi|282860196|ref|ZP_06269270.1| ribosome-associated GTPase EngA [Prevotella bivia JCVIHMP010] gi|282587017|gb|EFB92248.1| ribosome-associated GTPase EngA [Prevotella bivia JCVIHMP010] Length = 437 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+L+N F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSLINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++D+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VSEDLEFYSVMRSIRSIENSDVCILMIDATRGIEAQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 V 143 V Sbjct: 299 V 299 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 5/170 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTKTRHAIVSDVAGTTRDRQYGKCTWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + + AD+V VVD+ + D+ + + ++L+ NK+ Sbjct: 62 VKSDDIFEDAIRQQVLVATEEADLVLFVVDTETGVTDWDEDVALILRRTKLPVLLVANKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D AE + + +SA G G D+L+ L +P P Sbjct: 122 D--NSGEYYTSAEFYK--LGLGDPICISAQTGGGTGDLLDILLEKMPDTP 167 >gi|16803976|ref|NP_465461.1| GTP-binding protein EngA [Listeria monocytogenes EGD-e] gi|46908170|ref|YP_014559.1| GTP-binding protein EngA [Listeria monocytogenes serotype 4b str. F2365] gi|217963911|ref|YP_002349589.1| GTP-binding protein EngA [Listeria monocytogenes HCC23] gi|224498613|ref|ZP_03666962.1| GTP-binding protein EngA [Listeria monocytogenes Finland 1988] gi|224501264|ref|ZP_03669571.1| GTP-binding protein EngA [Listeria monocytogenes FSL R2-561] gi|226224541|ref|YP_002758648.1| hypothetical protein Lm4b_01954 [Listeria monocytogenes Clip81459] gi|254825568|ref|ZP_05230569.1| GTPase [Listeria monocytogenes FSL J1-194] gi|254827178|ref|ZP_05231865.1| GTPase [Listeria monocytogenes FSL N3-165] gi|254831462|ref|ZP_05236117.1| GTP-binding protein EngA [Listeria monocytogenes 10403S] gi|254899366|ref|ZP_05259290.1| GTP-binding protein EngA [Listeria monocytogenes J0161] gi|254912495|ref|ZP_05262507.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254931892|ref|ZP_05265251.1| GTPase [Listeria monocytogenes HPB2262] gi|254936822|ref|ZP_05268519.1| GTPase [Listeria monocytogenes F6900] gi|254993214|ref|ZP_05275404.1| GTP-binding protein EngA [Listeria monocytogenes FSL J2-064] gi|255028956|ref|ZP_05300907.1| GTP-binding protein EngA [Listeria monocytogenes LO28] gi|284802382|ref|YP_003414247.1| GTP-binding protein EngA [Listeria monocytogenes 08-5578] gi|284995524|ref|YP_003417292.1| GTP-binding protein EngA [Listeria monocytogenes 08-5923] gi|290892097|ref|ZP_06555093.1| GTPase [Listeria monocytogenes FSL J2-071] gi|300763753|ref|ZP_07073750.1| GTPase [Listeria monocytogenes FSL N1-017] gi|26006722|sp|Q8Y5W8|DER_LISMO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|67460310|sp|Q71Y78|DER_LISMF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783158|sp|B8DBY9|DER_LISMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|259645882|sp|C1KWN7|DER_LISMC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|16411390|emb|CAD00015.1| lmo1937 [Listeria monocytogenes EGD-e] gi|46881440|gb|AAT04736.1| GTPase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|217333181|gb|ACK38975.1| GTP-binding protein EngA [Listeria monocytogenes HCC23] gi|225877003|emb|CAS05712.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599561|gb|EEW12886.1| GTPase [Listeria monocytogenes FSL N3-165] gi|258609417|gb|EEW22025.1| GTPase [Listeria monocytogenes F6900] gi|284057944|gb|ADB68885.1| GTP-binding protein EngA [Listeria monocytogenes 08-5578] gi|284060991|gb|ADB71930.1| GTP-binding protein EngA [Listeria monocytogenes 08-5923] gi|290558220|gb|EFD91738.1| GTPase [Listeria monocytogenes FSL J2-071] gi|293583444|gb|EFF95476.1| GTPase [Listeria monocytogenes HPB2262] gi|293590479|gb|EFF98813.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594811|gb|EFG02572.1| GTPase [Listeria monocytogenes FSL J1-194] gi|300515489|gb|EFK42539.1| GTPase [Listeria monocytogenes FSL N1-017] gi|307571519|emb|CAR84698.1| GTPase family protein [Listeria monocytogenes L99] gi|313607930|gb|EFR84070.1| ribosome-associated GTPase EngA [Listeria monocytogenes FSL F2-208] gi|328466285|gb|EGF37442.1| GTP-binding protein Der [Listeria monocytogenes 1816] gi|328472780|gb|EGF43629.1| GTP-binding protein Der [Listeria monocytogenes 220] gi|332312377|gb|EGJ25472.1| GTPase Der [Listeria monocytogenes str. Scott A] Length = 436 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + I AD++ + + RE + + + +I RS++ ++L +NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNG-REGVTDADEQVAKILYRSNKPIVLAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +Q L F E + +S + G G D+L+ + + P Sbjct: 123 -NPE-MRDQIYDFYSLGFGE-PYPISGSHGLGLGDMLDAVRAHFP 164 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 +L+G N GKS+++N +G IV+ TTR + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K + + I+ +D+V +V+++ ++ + +I+++NK D Sbjct: 239 VYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDA 298 Query: 143 V 143 + Sbjct: 299 I 299 >gi|332673360|gb|AEE70177.1| ribosome-associated GTPase EngA [Helicobacter pylori 83] Length = 460 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +SA+ G +++ + + L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISASHNRGISALIDAVLNALNL 169 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 201 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 260 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 261 KILGIEKYALERTQKALEKSHIALLVLDVSTPF-VELDEKISSLADKHSLGIILILNKWD 319 >gi|149192034|ref|ZP_01870261.1| predicted GTPase [Vibrio shilonii AK1] gi|148834135|gb|EDL51145.1| predicted GTPase [Vibrio shilonii AK1] Length = 429 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 28/227 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIQLADVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE +HD+L+EI ++++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDDRFRENIQAVHDVLEEIDAHEVPSLVVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID + +R I I + VSA +G G + + L L Y Q Sbjct: 317 NKIDNLDGQR----PRIERNDEGIPRAVWVSAMEGQGIELLFEALTERLASQMVQY---Q 369 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILI 244 + P F T F + +C+ E+++E +G++LI Sbjct: 370 LRIPPQFQGRFRST----FFQM-------NCIQREEYDE--EGNLLI 403 >gi|122702699|emb|CAL88539.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F VS + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNVSVSHNRGISALIDAVLSALNL 168 >gi|122702887|emb|CAL88633.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGVPKSFNISVSHNRGISALIDAILSALNL 168 >gi|4467659|emb|CAB37781.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|269140141|ref|YP_003296842.1| GTP-binding protein [Edwardsiella tarda EIB202] gi|267985802|gb|ACY85631.1| GTP-binding protein [Edwardsiella tarda EIB202] gi|304559975|gb|ADM42639.1| GTP-binding protein EngA [Edwardsiella tarda FL6-60] Length = 494 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + + E + V +DT G+ Sbjct: 209 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 269 KVTDTVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVVVVNKWD 328 Query: 142 CVK---PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + E++ + ++ V + +SA G G ++ Sbjct: 329 GLSLEVKEQVKDMLDLRLGFVDFARIHFISALHGSGVGNLF 369 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 53/123 (43%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 ENGVETHMAEQSLMAIEEADIVLFLVDARDGLLPADEAIARHLRSRDKATFLVANKTDGI 123 Query: 144 KPE 146 E Sbjct: 124 DAE 126 >gi|188527319|ref|YP_001910006.1| GTP-binding protein EngA [Helicobacter pylori Shi470] gi|238691915|sp|B2USZ4|DER_HELPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188143559|gb|ACD47976.1| GTP-binding protein EngA [Helicobacter pylori Shi470] Length = 461 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +S + G +++ + S L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISTLIDAILSALDL 169 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 6/159 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSAT--KGHGCDDV 178 A + K F+E +++ + K H D++ Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPIITTSCLKTHHIDEI 359 >gi|109899427|ref|YP_662682.1| GTP-binding protein EngA [Pseudoalteromonas atlantica T6c] gi|123170868|sp|Q15R60|DER_PSEA6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|109701708|gb|ABG41628.1| small GTP-binding protein [Pseudoalteromonas atlantica T6c] Length = 482 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + Q + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYEGLQFIVVDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S I AD+V +VD+ L + + + K++ + ++ NK+D + Sbjct: 64 EQGIDMAMANQSLMAIDEADVVLFLVDARAGLTAADQGIAEHLRKQNKSVYVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + +E A+ + ++A G G +L + + +PL+ Sbjct: 124 DGD-----SESADFFALGLGDVNQIAAAHGRGVTQLLTH--TLMPLS 163 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 4/156 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V + TTR + + + + V +DT G+ + Sbjct: 197 LAIVGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSIFIPMERDDREYVLIDTAGVRRRR 256 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K I + I+ A++V LV+D+ + LL + L++ +NK D Sbjct: 257 SISEAVEKFSIVKTLQAIEEANVVLLVIDAQEGVTDQDLSLLGFVLNSGRSLVVAVNKWD 316 Query: 142 CVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCD 176 + + E + E+ +L FI+ + + HG + Sbjct: 317 GLAKDVKDEIKRELDRRLGFIDFARLHYISALHGTN 352 >gi|325854323|ref|ZP_08171522.1| tRNA modification GTPase TrmE [Prevotella denticola CRIS 18C-A] gi|325484117|gb|EGC87051.1| tRNA modification GTPase TrmE [Prevotella denticola CRIS 18C-A] Length = 510 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TN GKSTL+N + + +IV++ TTR + + F+DT G+ + Sbjct: 280 VAIIGKTNVGKSTLLNCLLHEEKAIVSNIHGTTRDTIEDTTEIQGVTFRFIDTAGLRHTD 339 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D +L IR +++ + A IV VVD E ++ + L +E +LI + NK+D Sbjct: 340 DQIEQLGIRRAYAKLDEASIVLWVVDRQPTTEERMEMRHLTEE-----KKLITVFNKMDT 394 Query: 143 V 143 + Sbjct: 395 M 395 >gi|307543972|ref|YP_003896451.1| GTP-binding protein EngA [Halomonas elongata DSM 2581] gi|307215996|emb|CBV41266.1| GTP-binding protein EngA [Halomonas elongata DSM 2581] Length = 467 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 17/215 (7%) Query: 8 FFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 F D D SG + ++G N GKSTLVNR +G +V + TTR + Sbjct: 162 FPERDPDIPADTGASGIHIGVIGRPNVGKSTLVNRLLGEDRVVVFDEAGTTRDAIEIPFE 221 Query: 67 EKESQIVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 + V +DT G+ N ++ K I + IK + +V+D+ L LL Sbjct: 222 RRGKPYVLVDTAGVRRRKNVREVAEKFSIIKTLEAIKECHVAVMVLDARSGLVEQDLHLL 281 Query: 124 KEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 + L+L +NK D ++ E + +AEI +L F + + +SA G D+ Sbjct: 282 DYVLTSGRALVLAVNKWDGLEHEAKEKMRAEIKRRLGFADYAELHFISALHGTAVGDLYP 341 Query: 181 YLCSTLPLAPWVYSADQISDL----------PMFH 205 + A +S ++++++ PM H Sbjct: 342 SIERAFESANSHWSTNRLTNILRDAVEQHQPPMIH 376 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 51/121 (42%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ ++V TR G +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGNGMLGGKAYTVIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I ADIV +VD L V + + + L++NK D + Sbjct: 64 EEGIDAAMAEQSLQAIDEADIVLFMVDGRSGLNVADEAIANHLRVNQKKTWLVVNKTDGL 123 Query: 144 K 144 + Sbjct: 124 E 124 >gi|307128609|ref|YP_003880639.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri CARI] gi|306483071|gb|ADM89941.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri CARI] Length = 454 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+++G N GKSTL N+ + + SIV++ TTR+ + + + F+DT GI N Sbjct: 223 SVSIIGCPNVGKSTLFNKLLKYERSIVSNMAGTTRNYIEDSLIINGIKYRFIDTAGINNK 282 Query: 84 KDSY-HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +Y KL I+ ++S IK +DI+ V D+ + + + + ++ +I+NK D Sbjct: 283 TKNYIEKLGIKKTYSNIKKSDIILYVFDNFNKKIIYNKKKKLQKEYPNKKIFIIINKYD 341 >gi|294677824|ref|YP_003578439.1| GTP-binding protein EngA [Rhodobacter capsulatus SB 1003] gi|294476644|gb|ADE86032.1| GTP-binding protein EngA [Rhodobacter capsulatus SB 1003] Length = 499 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 9/180 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V TR + G + + V +D+ G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDLREGDARLGDLRFVVIDSAGLELA 63 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + DS M RL+ ++ AD+ ++D+ + + K+++ +IL NK + Sbjct: 64 EDDSLQGRMRRLTERAVEEADVCLFLIDARVGVTPADEIFADILRKKNAHVILAANKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 + + + + +SA G G DD+ + L PLA ++A ++ +P Sbjct: 124 NA----GAAGALEAWSLGLGEPIALSAEHGQGLDDLYDILQ---PLADG-FAARNVAQMP 175 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 36/200 (18%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R +A++G NAGKSTL+N+ +G + + TR + + + + DT G Sbjct: 197 ARPLQLAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISVTKTFMGTPMRIWDTAG 256 Query: 80 I---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLIL 135 + D KL + ++ A++V +++D + + + DL + + A+ R ++ Sbjct: 257 MRKKARVSDKLEKLSVADGLRAVRFAEVVVVLLDVN--IPFEVQDLRIADFAETEGRAVV 314 Query: 136 I-LNKIDCVKP------------ERLLEQAEIANKLVFIEKTFMVSATKGHGCD------ 176 + NK D + ERLL Q A VSA G G D Sbjct: 315 VAANKWDLEEEKTEKLKELRENFERLLPQLRGA-------PLVTVSAKTGKGLDRLHNAI 367 Query: 177 ----DVLNYLCSTLPLAPWV 192 +V N ST L W+ Sbjct: 368 LKAYEVWNRRISTAKLNNWL 387 >gi|257064345|ref|YP_003144017.1| iron-only hydrogenase maturation protein HydF [Slackia heliotrinireducens DSM 20476] gi|256791998|gb|ACV22668.1| iron-only hydrogenase maturation protein HydF [Slackia heliotrinireducens DSM 20476] Length = 416 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 + G NAGKS+LVN G +++V+ TT VR + +V +DTPGI + Sbjct: 23 IGFFGVRNAGKSSLVNAVTGQNLAVVSDTPGTTTDPVRKAMELLPVGPVVIVDTPGIDDT 82 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + +L + + + AD+ LVVD + L L+ E KR ++LNK D Sbjct: 83 GE-LGELRVEKARRAMDSADVAVLVVDGTQGLGAVDEQLIDEFRKREVPYAVVLNKAD 139 >gi|269127039|ref|YP_003300409.1| small GTP-binding protein [Thermomonospora curvata DSM 43183] gi|268311997|gb|ACY98371.1| small GTP-binding protein [Thermomonospora curvata DSM 43183] Length = 463 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 6/174 (3%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D V+ + VA+VG N GKSTLVNR +G + ++V TR V ++ Sbjct: 16 DGVRQDRVPPVVAVVGRPNVGKSTLVNRVLGRREAVVEDVPGVTRDRVSYEADWSGRRLT 75 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR- 132 +DT G + + ++ AD+V VVD+ ++ + + +I +RS + Sbjct: 76 IVDTGGWLPDATGLAAAVAEQARLAVELADVVLFVVDATVG-ATDVDEAVVDILRRSGKP 134 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++L+ NK+D E L+ A + + + I + VSA G G D+L+ + + L Sbjct: 135 VLLVANKVDDAATE--LDAAALWS--LGIGEPHPVSALHGRGSGDLLDAVLAAL 184 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VAL+G N GKS+L+N+ G +V TTR V ++ F+DT GI Sbjct: 202 VALLGRPNVGKSSLLNKLAGENRVVVDDVAGTTRDPVDELIELGGRTWRFIDTAGIRRRY 261 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + S ++ A++ +++D+ + L ++ + + L++ N Sbjct: 262 RESQGADFYATLRTQ---SALERAEVAVVLIDASQPLAEQDLRIISMVIEAGRALVIAYN 318 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 319 KWDLLDEER 327 >gi|224282624|ref|ZP_03645946.1| GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] gi|310287084|ref|YP_003938342.1| GTP-binding protein [Bifidobacterium bifidum S17] gi|309251020|gb|ADO52768.1| GTP-binding protein [Bifidobacterium bifidum S17] Length = 521 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 16/177 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG TNAGKS+L NR G+ + T + VR ++ ++DT G Sbjct: 285 TIAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRN 344 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEI--AKRSSRLILIL 137 + + + + ADI+ VVD SH + I +D+L +I A+ R +++ Sbjct: 345 LPTQLIEAFKSTLEEVAEADIILHVVDGSHPDPFSQIDAVNDVLADIEGAEEIPR-VVVF 403 Query: 138 NKIDCVKPERLLEQAEIANKLVFIE-KTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 NKID + A +L +E + +VSA G G DD+L + S LP+ P V+ Sbjct: 404 NKIDRI-------DAATRERLAALEPEASLVSAATGEGLDDLLRRIESMLPV-PGVH 452 >gi|152993155|ref|YP_001358876.1| tRNA modification GTPase TrmE [Sulfurovum sp. NBC37-1] gi|205829171|sp|A6QAL0|MNME_SULNB RecName: Full=tRNA modification GTPase mnmE gi|151425016|dbj|BAF72519.1| tRNA modification GTPase TrmE [Sulfurovum sp. NBC37-1] Length = 450 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N + +IV+ TTR + V I +DT GI ++ Sbjct: 221 VAIIGKPNVGKSSLLNALLSYDRAIVSDIAGTTRDTIEEQVRIGSHIIRLVDTAGIRESE 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKIDC 142 D+ K+ I S S+++ ADI+ + D RE +L + A + +I+ +NK D Sbjct: 281 DTIEKIGIERSLSSVEDADIIIALFDGSREFDSEDEKILAIVDALQDKHIIVAINKSDL 339 >gi|157826088|ref|YP_001493808.1| GTP-binding protein EngA [Rickettsia akari str. Hartford] gi|166225849|sp|A8GPH5|DER_RICAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157800046|gb|ABV75300.1| GTP-binding protein EngA [Rickettsia akari str. Hartford] Length = 447 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 +ALVG N GKSTL NR K +IV TR R K FL DTPG+ Sbjct: 6 IALVGRPNVGKSTLFNRLSIRKKAIVHDLPGITRD--RKYTDGKIGSFEFLLIDTPGLEE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS ++ + I AD++C +VD + N L + K + IL++NK C Sbjct: 64 NHDSMGARLMEQTTKAILEADLICFMVDGRSGILPNDKLLGSFVRKYNKPAILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 122 ---EKAFDFDKEYYKLGF-DSMVTISAEHGTGLIDLYDEIITKLP 162 Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G NAGKST +N + + + + TR + K + I +DT G+ Sbjct: 182 IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWHYKNNHIKLIDTAGLRKKS 241 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S KL + ++IK A+ V L++D+ LK ++ + +++++NK D Sbjct: 242 TITESLEKLSASDAINSIKFANTVILMIDALAPLKQQDLNIASHVVNEGRGIVIVVNKWD 301 Query: 142 CVK 144 VK Sbjct: 302 LVK 304 >gi|309972741|gb|ADO95942.1| GTP-binding protein EngA [Haemophilus influenzae R2846] Length = 504 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 11/184 (5%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 ++F ++ ++ +A+VG N GKSTL NR +G +V TTR + + Q Sbjct: 206 EEFEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQY 265 Query: 73 VFLDTPGIFNAKD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 +DT G+ + K + + I+ A++V L +D+ + LL I Sbjct: 266 TLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNA 325 Query: 130 SSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----Y 181 L++++NK D + + + ++E+ +L FI+ + +SA G G ++ + Y Sbjct: 326 GRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAY 385 Query: 182 LCST 185 C+T Sbjct: 386 ACAT 389 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 9/176 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I ADIV +VD+ L + + +R +++ +++ NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 143 VKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 125 IDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|322385140|ref|ZP_08058787.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus ATCC 51100] gi|321270764|gb|EFX53677.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus ATCC 51100] Length = 520 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 284 REGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNINGVPLKLIDTAG 343 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL EI++ S+R++L LNK Sbjct: 344 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLL-EISQDSNRIVL-LNK 401 Query: 140 IDC 142 D Sbjct: 402 TDL 404 >gi|300087240|ref|YP_003757762.1| ribosome-associated GTPase EngA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526973|gb|ADJ25441.1| ribosome-associated GTPase EngA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 439 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+NR G + +I TTR + VS + + +DT G+ Sbjct: 6 SVAIVGRQNVGKSTLLNRLTGRRQAITQDLPGTTRDRMYVPVSHSGREFLLVDTGGMAGG 65 Query: 84 K--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + + ++ A ++ + ++ L ++ +E+ + S +IL++NK+D Sbjct: 66 DTGDVFTPAVNEQVRIAMREASVIVFLTEARFGLTPQDEEIAEEVRRSSKPVILVVNKVD 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +R A I + + + VSA G G D +L+ + LP Sbjct: 126 N---DRQGHHA-IEFHALGMGEPVPVSAYHGRGTDALLDRVVELLP 167 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKS+L+N VG +IV+ TTR V + +V +DT GI Sbjct: 181 IAIAGRANVGKSSLLNTLVGEDRAIVSPVPGTTRDAVDTPIDFGTGGVVLIDTAGIRRRG 240 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + +IR S I AD+V +V+D+ + ++ LIL++NK Sbjct: 241 RIERGVEEYSVIR-SLHAIDRADVVLIVLDAGEPATAQDTHIAGYAREKCRGLILVVNKS 299 Query: 141 DCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 D +K + E +A++ FI + VSA G G D ++ Sbjct: 300 DLLKEVDMAEFDKNMASRFKFIPYARQINVSALSGEGVDKII 341 >gi|262380662|ref|ZP_06073815.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SH164] gi|262297610|gb|EEY85526.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SH164] Length = 454 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 14/144 (9%) Query: 15 FVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 VQ ++R G V + G NAGKS+L+N G +IVT TTR ++ +S Sbjct: 205 LVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGNDRAIVTDIAGTTRDVLHEKISL 264 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLK 124 I DT G+ D + IR + I+ AD++ LV D LK+ + + Sbjct: 265 NGLPITLTDTAGLRETGDIVEQEGIRRAIKEIEQADLLLLVYDLSQGEDPLKLAQNYFAE 324 Query: 125 EIAKRSSRLILILNKIDC--VKPE 146 + + RLILI NK D V+PE Sbjct: 325 HLEPK--RLILIGNKCDLIGVQPE 346 >gi|307249625|ref|ZP_07531611.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858323|gb|EFM90393.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 506 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 220 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 279 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + + LL I L++++NK D Sbjct: 280 KVNLAVEKFSVIKTLQAIQDANVVLLTIDARKGISDQDLSLLGFILNAGRSLVIVVNKWD 339 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 340 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 391 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 NAD 126 >gi|255323406|ref|ZP_05364537.1| ribosome-associated GTPase EngA [Campylobacter showae RM3277] gi|255299443|gb|EET78729.1| ribosome-associated GTPase EngA [Campylobacter showae RM3277] Length = 467 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 17/170 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + LVG N GKS+L NR G +++I + TTR + I+ + V +D+ G+ ++ Sbjct: 4 IILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDRSCVLIDSGGLDDSS 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + + + + +D + +VD L + K + L++NKID K Sbjct: 64 ELFKNVKAK-TLAEARSSDAIIFMVDGKMMPSDEDKALYYALLKLNLPTALVINKIDSKK 122 Query: 145 PERLLEQAEIANKLVFIEKT-FMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 E L E AN F KT F +S + G D+ LA W+Y Sbjct: 123 DE--LRSYEFAN---FGAKTSFAISVSHNAGIDE----------LADWIY 157 Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 2/152 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N V ++V+ TT V ++ F+DT GI Sbjct: 202 VGIIGRVNVGKSSLLNALVKESRAVVSDIAGTTIDPVNETFVYEDRVFEFVDTAGIRKRG 261 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + S ++ ADI LV+DS L + AK +I++LNK D Sbjct: 262 KIEGIERYALNRTESALELADIALLVLDSSEPLTELDERIAGLAAKFELGVIIVLNKWDK 321 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + + EI +K F+ ++S + G Sbjct: 322 SEEDFDKFSREIRDKFKFLAYAPIISVSALGG 353 >gi|222616294|gb|EEE52426.1| hypothetical protein OsJ_34551 [Oryza sativa Japonica Group] Length = 563 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 15/194 (7%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-S 59 M E++ F E +D + +A+VG N GKS+++N VG +IV+ TTR + Sbjct: 249 MVCSELSNFEELDGVEEDGNYIPAIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDA 308 Query: 60 IVRGIVSEKESQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 I +E + +DT GI +A + L ++ ++ I+ +D+V LVV++ Sbjct: 309 IDTEFTTEDGQKYKLIDTAGIRRRAAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMA 368 Query: 114 ELKVNIHDLLKEIAKRSSRLILILNKIDCV-----KPERLLEQAEIANKLVFIEKTFMV- 167 + + + + I K ++++NK D + + EQ ++ KL ++ +V Sbjct: 369 CITEQDYKIAERIEKEGKACVIVVNKWDTIPNKNHQSTTYYEQ-DVREKLRILDWAPIVY 427 Query: 168 -SATKGHGCDDVLN 180 SAT G D +++ Sbjct: 428 CSATHGSSVDKIIS 441 >gi|125562771|gb|EAZ08151.1| hypothetical protein OsI_30415 [Oryza sativa Indica Group] gi|125602548|gb|EAZ41873.1| hypothetical protein OsJ_26418 [Oryza sativa Japonica Group] Length = 69 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 42/63 (66%) Query: 234 WEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVK 293 W+E KDGS+ + Q + SQ++I++GKNG I I +EA +E+ I ++ VHLIL V+ Sbjct: 3 WKELKDGSLRVEQHFIAPKQSQRQILVGKNGSKIGRIGIEANEELRSIFKRDVHLILQVR 62 Query: 294 VQK 296 V K Sbjct: 63 VAK 65 >gi|83593020|ref|YP_426772.1| small GTP-binding protein domain-containing protein [Rhodospirillum rubrum ATCC 11170] gi|83575934|gb|ABC22485.1| Small GTP-binding protein domain [Rhodospirillum rubrum ATCC 11170] Length = 418 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 16/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TN+GKSTL NR V T +R + +++ DT G + Sbjct: 193 VVALVGYTNSGKSTLFNRLTAGGVLAKDMLFATLDPTMRSLDLPSGRKVILSDTVGFVS- 251 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLV-----VDSHRELKVNIHDLLKEI---AKRSSRL 133 D H+L+ R + +K AD++ V +DS + K ++ +L+E+ + S L Sbjct: 252 -DLPHELVAAFRATLEEVKAADVIVHVRDIAGIDSDAQ-KADVEVVLREMELDERVESGL 309 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 I LNKID + ER QA++ + VSA G G D +L + + L Sbjct: 310 IEALNKIDLLDSER---QAQLVEDTAGRDTLVPVSAVTGAGTDALLARIDARL 359 >gi|331090851|ref|ZP_08339697.1| GTP-binding protein engA [Lachnospiraceae bacterium 2_1_46FAA] gi|330399710|gb|EGG79372.1| GTP-binding protein engA [Lachnospiraceae bacterium 2_1_46FAA] Length = 442 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + V+ + + +DT GI + Sbjct: 5 IVAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVNWLDKEFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SKDIILSQMREQAQIAIDTADVIIFLTDVKQGL-VDSDSKVADMLRRSGKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + + E N + I F +SA+ G D+L+ + P Sbjct: 124 SFQ-KFMADVYEFYN--LGIGDPFPISASSRLGIGDMLDEVVKHFP 166 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+++N+ G IV+ TTR + ++ + VF+DT G+ Sbjct: 180 IAIVGKPNVGKSSIINKLQGDNRVIVSDIAGTTRDAIDTPITYNGKEYVFIDTAGLRRKN 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +V+D+ + + +R +I+++NK D Sbjct: 240 KIKEELERYSIIRTVTAVERADVVLIVIDATEGVTEQDAKIAGIAHERGKGIIIVVNKWD 299 Query: 142 CVK 144 ++ Sbjct: 300 AIE 302 >gi|307329243|ref|ZP_07608408.1| GTP-binding proten HflX [Streptomyces violaceusniger Tu 4113] gi|306885142|gb|EFN16163.1| GTP-binding proten HflX [Streptomyces violaceusniger Tu 4113] Length = 500 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + DT G Sbjct: 276 SVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRH 335 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + R + + AD++ VVD SH E + ++++++ I+++NK Sbjct: 336 LPHHLVEAFRSTMEEVGDADLIVHVVDGSHPAPEEQLAAVREVIRDVGAVDVPEIVVINK 395 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLP 187 D P + +L+ +E+ M VSA G G D++L + LP Sbjct: 396 ADLADP-------LVVQRLLRMERRAMAVSARSGLGIDELLAVIDEELP 437 >gi|326319555|ref|YP_004237227.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376391|gb|ADX48660.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC 19860] Length = 476 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 53/105 (50%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 234 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESD 293 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 D ++ I +W I AD V + D R + + EIA R Sbjct: 294 DEVERIGIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAAR 338 >gi|308063376|gb|ADO05263.1| GTP-binding protein EngA [Helicobacter pylori Sat464] Length = 460 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +S + G +++ + S L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAILSALDL 169 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 6/159 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 201 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 260 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 261 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 319 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSAT--KGHGCDDV 178 A + K F+E +++ + K H D++ Sbjct: 320 IRYAPYEEIMATLKRKFRFLEYAPIITTSCLKAHHIDEI 358 >gi|145635317|ref|ZP_01791020.1| GTP-binding protein EngA [Haemophilus influenzae PittAA] gi|145267461|gb|EDK07462.1| GTP-binding protein EngA [Haemophilus influenzae PittAA] Length = 504 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 11/184 (5%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 ++F ++ ++ +A+VG N GKSTL NR +G +V TTR + + Q Sbjct: 206 EEFEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQY 265 Query: 73 VFLDTPGIFNAKD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 +DT G+ + K + + I+ A++V L +D+ + LL I Sbjct: 266 TLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNA 325 Query: 130 SSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----Y 181 L++++NK D + + + ++E+ +L FI+ + +SA G G ++ + Y Sbjct: 326 GRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAY 385 Query: 182 LCST 185 C+T Sbjct: 386 ACAT 389 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 9/176 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I ADIV +VD+ L + + +R +++ +++ NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 143 VKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 125 IDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|226954466|ref|ZP_03824930.1| GTP-binding protein EngA [Acinetobacter sp. ATCC 27244] gi|294651482|ref|ZP_06728795.1| GTP-binding protein EngA [Acinetobacter haemolyticus ATCC 19194] gi|226834815|gb|EEH67198.1| GTP-binding protein EngA [Acinetobacter sp. ATCC 27244] gi|292822632|gb|EFF81522.1| GTP-binding protein EngA [Acinetobacter haemolyticus ATCC 19194] Length = 469 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + +DT GI Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGEN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +E+ ++ L+ NK+D V Sbjct: 64 EGGIDSYMAEQSKTAIHEADIIVFVVDARAGLLASDEQIARELRTLGKKVYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + + + + V+A+ G G +L + + +P Sbjct: 124 HAEAAL----VEFYKLGMGEPLQVAASHGRGVQQMLEDVLAEVP 163 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 12/184 (6%) Query: 19 NSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 N +G +A++G N GKSTLVNR +G + + + TTR + Q +DT Sbjct: 172 NKNTGLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDT 231 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ + K I + +K A++V +VVD+ + L+ + ++ Sbjct: 232 AGVRRKGKVDEMIEKFSIVKTLQAMKDANVVVIVVDAREGIVEQDLHLIGYALEAGRAMV 291 Query: 135 LILNKID-CVKPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL-----NYLCSTL 186 + +NK D + +R + ++ + FI K ++SA G G ++ Y S L Sbjct: 292 IAINKWDNMTEYDRKQCKLDVERRFDFIPWAKIHLISALHGTGVGELYPSIHRAYESSNL 351 Query: 187 PLAP 190 ++P Sbjct: 352 KVSP 355 >gi|122702691|emb|CAL88535.1| GTPase [Helicobacter pylori] gi|317453533|emb|CBL87876.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILSALNL 168 >gi|99905855|gb|ABF68622.1| YphC [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNLNP 170 >gi|92117234|ref|YP_576963.1| GTP-binding protein EngA [Nitrobacter hamburgensis X14] gi|122418012|sp|Q1QMP4|DER_NITHX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91800128|gb|ABE62503.1| Small GTP-binding protein domain [Nitrobacter hamburgensis X14] Length = 460 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL NR VG K+++V K TR G + +DT G+ Sbjct: 4 TIAIIGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRREGQARLGDLDFTVIDTAGLDEG 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + S M + + I AD + V D+ L + A+R+++ ++L+ NK + Sbjct: 64 PRGSLTARMQEQTETAIAAADALMFVFDARAGLTPTDRS-FADFARRANKPVVLVANKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R E + + + + VSA G G D+ + L +P Sbjct: 123 G----RHGEAGALESYALGLGDPVGVSAEHGEGMSDLYDALRGVMP 164 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKSTL+N +G + + + + TTR + ++ + DT G+ Sbjct: 191 VAIVGRPNAGKSTLINYLLGEERLLTSPEAGTTRDSISVELNWQGRDFRIFDTAGLRRRS 250 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 ++ KL + + + A++V L++D+ E + I DL I + L++ +N Sbjct: 251 RIEEKLEKLSVADTLRAARFAEVVVLMMDAQNRFEEQDLRIADL---IEREGRALVIAVN 307 Query: 139 KIDCV 143 K D + Sbjct: 308 KWDLM 312 >gi|86357576|ref|YP_469468.1| GTP-binding protein [Rhizobium etli CFN 42] gi|86281678|gb|ABC90741.1| GTP-binding protein [Rhizobium etli CFN 42] Length = 441 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 33/197 (16%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK-------EIAKRSSRLIL 135 ++ R + + AD++ V D S + + D+++ + A+ RLI Sbjct: 264 LPTHLVAAFRATLEEVLEADLILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAEKRLIE 323 Query: 136 ILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC--------- 183 + NKID ++PE ++++A A+ +V VSA G G D ++ + Sbjct: 324 VWNKIDRLEPEVHDAMVQRAAGASNVV------AVSAVSGEGVDTLMEEISRRLSGVMTE 377 Query: 184 -------STLPLAPWVY 193 L L PW+Y Sbjct: 378 TTIRLPVDKLALLPWLY 394 >gi|317452819|emb|CBL87845.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILSALNL 168 >gi|238921763|ref|YP_002935278.1| tRNA modification GTPase TrmE [Edwardsiella ictaluri 93-146] gi|238871332|gb|ACR71043.1| probable tRNA modification GTPase TrmE, putative [Edwardsiella ictaluri 93-146] Length = 455 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 280 DEVERIGIERAWQEIERADRVLFMVDG 306 >gi|116873379|ref|YP_850160.1| GTP-binding protein EngA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458584|sp|A0AK49|DER_LISW6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116742257|emb|CAK21381.1| GTPase family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 436 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + I AD++ + + RE + + + +I RS++ ++L +NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNG-REGVTDADEQVAKILYRSNKPIVLAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +Q L F E + +S + G G D+L+ + + P Sbjct: 123 -NPE-MRDQIYDFYSLGFGEP-YPISGSHGLGLGDMLDAVRAHFP 164 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 +L+G N GKS+++N +G IV+ TTR + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K + + I+ +D+V +V+++ ++ + +I+++NK D Sbjct: 239 VYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDA 298 Query: 143 V 143 + Sbjct: 299 I 299 >gi|91069954|gb|ABE10882.1| GTP-binding protein [uncultured Prochlorococcus marinus clone ASNC2259] Length = 457 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +QD+ ++++G N GKS+L+N G K +IV+ TT + ++ + ++ + Sbjct: 170 IQDDEEKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKII 229 Query: 76 DTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI N K I ++ +I +D+ LV+D+ + L I ++ Sbjct: 230 DTAGIRRKKNVKYGAEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQDQKLAGRIEEQGRA 289 Query: 133 LILILNKIDCV-KPERLLEQA--EIANKLVFI--EKTFMVSATKGHGCDDVLNY 181 I+++NK D V K + Q E+ +KL F+ K +SA G D++ + Sbjct: 290 CIIVVNKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQRVDNIFEH 343 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR + +IV K TR S + +DT G+ Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65 Query: 85 DSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 DS IR + ++ + + LVVD ++ + + K + S + I+ +NK C Sbjct: 66 DSEFLPEIRTQVFLALEESSLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + A KL E VSA G G D+L+ + LP Sbjct: 124 STTLGISLASEFWKLGLGE-PIPVSAIHGSGTGDLLDLVICELP 166 >gi|87123548|ref|ZP_01079399.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917] gi|86169268|gb|EAQ70524.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917] Length = 460 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 7/133 (5%) Query: 15 FVQDNSRSGC------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 V D RS VALVG N GKS+L+NR + +IVT TTR ++ + + Sbjct: 213 LVADGERSAALRSGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLE 272 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 I LDT GI D+ +L I S + AD+V L+ D + L + I + Sbjct: 273 GVPITLLDTAGIRATTDAVEQLGIARSHDALASADLVLLLFDLSEGWTADDQALRQRIPE 332 Query: 129 RSSRLILILNKID 141 L L+ NK D Sbjct: 333 EVPHL-LVGNKAD 344 >gi|325068743|ref|ZP_08127416.1| GTP-binding protein Der [Actinomyces oris K20] Length = 533 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 4/178 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 98 VLAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVD 157 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + ++ AD V LVVD+ + +++ + + ++L NK+D Sbjct: 158 VAGLDAAVATQAEIAVEMADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKVDS- 216 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 P + + A + N + + + F VSA G G +VL+ + LP V +A DL Sbjct: 217 -PAQEGDAATLWN--LGLGEPFPVSALHGRGSGEVLDAVMEVLPEVSAVATAAPEGDL 271 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +ALVG N GKS+L+N G + +V TTR V I+ Q VF+DT GI Sbjct: 274 IALVGRPNVGKSSLLNSIAGRERVVVNETAGTTRDPVDEIIELDGRQWVFVDTAGIRRRV 333 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + I A++ +++D+ + ++++ L+L+ N Sbjct: 334 KQSRGADYYAVLRTQ---GAIDKAEVAVVLLDASEPISEQDVRVVQQAVDAGRALVLVNN 390 Query: 139 KIDCVKPER 147 K D V ER Sbjct: 391 KWDLVDEER 399 >gi|122701639|emb|CAL88209.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L N +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFSISVSHNRGISALIDAILSALNLNP 170 >gi|145589466|ref|YP_001156063.1| GTP-binding protein, HSR1-related [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047872|gb|ABP34499.1| GTP-binding protein HflX [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 387 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 11/171 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A T + R + E IV DT G Sbjct: 174 SVSLVGYTNAGKSTLFNALTKAGTYAADQLFATLDTTSRRVHLEGVGSIVVSDTVGFI-- 231 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRLILIL 137 +D H+L+ R + HAD++ V+D+ RE K + +L+EI I ++ Sbjct: 232 RDLPHQLVEAFRATLDETIHADLILHVIDACSPVAREQKAEVEAVLEEIGADDIPRIEVM 291 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL--CSTL 186 NKID + P+ A + +SA G G D + + L CS + Sbjct: 292 NKIDLM-PQTFTRGAVLERDGQGFPSQVFLSAQTGLGLDLLRSALAECSQM 341 >gi|24374819|ref|NP_718862.1| GTP-binding protein EngA [Shewanella oneidensis MR-1] gi|37999695|sp|Q8EC36|DER_SHEON RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24349505|gb|AAN56306.1|AE015769_2 GTP-binding protein EngA [Shewanella oneidensis MR-1] Length = 487 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 4/186 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NKID + Sbjct: 64 EEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSRQKTTFVVANKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 + AE + + + + + ++A +G G +++ Y + A + + ++ Sbjct: 124 DADSAC--AEFWS--LGLGEVYQMAAAQGRGVTNMIEYALTPYAEAMGIERQGEEEEVDE 179 Query: 204 FHFTAE 209 +T E Sbjct: 180 RQYTEE 185 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + V +DT G+ + Sbjct: 201 LAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGV-RRR 259 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+++ + S ++ A++V L++D+ + LL L++ +NK Sbjct: 260 SKVHEVIEKFSVIKTLKAVEDANVVLLIIDAREGVAEQDLGLLGFALNAGRALVIAVNKW 319 Query: 141 DCVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + +R+ ++E+ +L FI+ + +SA G G Sbjct: 320 DGIDQGIKDRV--KSELDRRLGFIDFARIHFISALHGTGV 357 >gi|317178156|dbj|BAJ55945.1| tRNA modification GTPase TrmE [Helicobacter pylori F16] Length = 450 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|159490690|ref|XP_001703306.1| hypothetical protein CHLREDRAFT_114154 [Chlamydomonas reinhardtii] gi|158280230|gb|EDP05988.1| predicted protein [Chlamydomonas reinhardtii] Length = 450 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 25/172 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKSTL+N +G + ++ + TR VR + ++ + +DT G + Sbjct: 194 LAIMGLPNAGKSTLLNALLGEQRAVTGPEPGLTRDSVRAAWTYGDTAVELVDTAGWVMRR 253 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + R + +++ +V LV+D+ R L + L + + L+++ NK D Sbjct: 254 NWRGVAAMSRRAALTSLAQVHVVLLVLDAERALASDRVSLAGTVLREGKALVVVANKADV 313 Query: 143 VK---------------PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + ER L+ A +L +E VSA G G DDV+ Sbjct: 314 LSVAQRRAFTKALQRHLGERFLD----AGELPVVE----VSARAGTGLDDVM 357 >gi|122702497|emb|CAL88439.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILDTLNL 168 >gi|122700857|emb|CAL88017.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A + + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEK---ERAYVFSSF-GIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|326773386|ref|ZP_08232669.1| ribosome-associated GTPase EngA [Actinomyces viscosus C505] gi|326636616|gb|EGE37519.1| ribosome-associated GTPase EngA [Actinomyces viscosus C505] Length = 719 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 4/178 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 284 VLAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVD 343 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + ++ AD V LVVD+ + +++ + + ++L NK+D Sbjct: 344 VAGLDAAVATQAEVAVEMADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKVDS- 402 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 P + + A + N + + + F VSA G G +VL+ + LP V +A DL Sbjct: 403 -PAQEGDAATLWN--LGLGEPFPVSALHGRGSGEVLDAVMEVLPEVSAVATAAPEGDL 457 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +ALVG N GKS+L+N G + +V TTR V I+ Q VF+DT GI Sbjct: 460 IALVGRPNVGKSSLLNSIAGQERVVVNETAGTTRDPVDEIIELDGRQWVFVDTAGIRRRV 519 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + I A++ +++D+ + ++++ L+L+ N Sbjct: 520 KQSRGADYYAVLRTQ---GAIDKAEVAVVLLDASEPISEQDVRVVQQAVDAGRALVLVNN 576 Query: 139 KIDCVKPER 147 K D V ER Sbjct: 577 KWDLVDEER 585 >gi|322411935|gb|EFY02843.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 458 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ AD+V LV+++ L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRSLLY-LSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|312136220|ref|YP_004003558.1| tRNA modification gtpase trme [Caldicellulosiruptor owensensis OL] gi|311776271|gb|ADQ05758.1| tRNA modification GTPase TrmE [Caldicellulosiruptor owensensis OL] Length = 455 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG +VG N GKS+L+NR + + +IVT TTR ++ ++ + I+ DT G Sbjct: 218 KSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +D K+ + + +I+ AD+V +V+S L+ ++ ++ + I + R ++++NK Sbjct: 278 VRRTEDVVEKIGVERTLKSIERADLVLFMVESSGILQEDL-EIFETI--KDKRFVVLVNK 334 Query: 140 ID 141 ID Sbjct: 335 ID 336 >gi|297380695|gb|ADI35582.1| tRNA modification GTPase TrmE [Helicobacter pylori v225d] Length = 461 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDFV---QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF + ++ +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 204 QIASFKDLLDFSNTQRQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 263 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DIV V D + L+ + Sbjct: 264 EEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFN 323 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 324 LIDALNRAKKPCIVVLNKND 343 >gi|296328064|ref|ZP_06870598.1| ribosome-associated GTPase EngA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154840|gb|EFG95623.1| ribosome-associated GTPase EngA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 440 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 3/134 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +++ +A++G NAGKS+LVN+ G + +IV+ TTR + ++ K+++ + Sbjct: 168 DFPEEDEEVLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYM 227 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT GI ++S + + IK AD+ L++D+ L + + Sbjct: 228 IIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAHEEL 287 Query: 131 SRLILILNKIDCVK 144 +I+++NK D V+ Sbjct: 288 KPIIIVMNKWDLVE 301 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG K++IV TR + S+ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L +EIA K++ +IL + Sbjct: 65 NDF--LMAKIKEQAEVAMNEADVILFVVDG----KSGLNPLDEEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|292806566|gb|ADE42413.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILSALNL 168 >gi|188575916|ref|YP_001912845.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520368|gb|ACD58313.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 428 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA+ + T VR I S I DT G + Sbjct: 190 IALVGYTNAGKSTLFNALTGAEAYVADQLFATLDPTVRRIALPGGSAI-LADTVGFV--R 246 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ +VD+ L+ + + ++L+ + +L+ N Sbjct: 247 DLPHELVAAFRSTLSEARDADLLLHIVDAADPLREERILQVDEVLQAVGAGDLPQLLVFN 306 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID + + A+ + VSA G G +++ + L L L Sbjct: 307 KIDKIDGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQRLDL 356 >gi|122702475|emb|CAL88428.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + EQA A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEK---EQA-YAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|78047325|ref|YP_363500.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294665636|ref|ZP_06730913.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|78035755|emb|CAJ23446.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292604582|gb|EFF47956.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 439 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA+ + T VR I S I DT G + Sbjct: 201 IALVGYTNAGKSTLFNVLTGAEAYVADQLFATLDPTVRRIALPGGSAI-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ VVD+ L+ + + ++L+ + +L+ N Sbjct: 258 DLPHELVAAFRSTLSEARDADLLLHVVDAADPLREERILQVDEVLQAVGAGDLPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID ++ + A+ + VSA G G +++ + L L L Sbjct: 318 KIDKIEGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQRLDL 367 >gi|27379603|ref|NP_771132.1| GTP-binding protein HFLX [Bradyrhizobium japonicum USDA 110] gi|27352755|dbj|BAC49757.1| GTP-binding protein HFLX [Bradyrhizobium japonicum USDA 110] Length = 437 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 7/163 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R + + + DT G + Sbjct: 204 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRALTLPHGGKAMLSDTVGFISN 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA---KRSSRLILI 136 + R + + AD++ V D SH + + D +L+++ S R+I + Sbjct: 264 LPTQLIAAFRATLEEVLEADVILHVRDISHEDAEAQQSDVDAVLRQLGINPDDSGRIIEV 323 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NKID E+ E IA + +VSA G G D +L Sbjct: 324 WNKIDRYDAEQREELLNIAARRPEDHPAMLVSAVSGEGVDALL 366 >gi|84517346|ref|ZP_01004700.1| GTP-binding protein EngA [Loktanella vestfoldensis SKA53] gi|84508826|gb|EAQ05289.1| GTP-binding protein EngA [Loktanella vestfoldensis SKA53] Length = 485 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 5/160 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V + TR + G + + +D+ G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEGRLADLRFTVIDSAGLEEA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS M RL+ ++ AD+ ++D+ + + K+++ +IL NK + Sbjct: 64 TDDSLQGRMRRLTERAVEMADVCLFMIDARAGVLPADQVFADILRKKNANVILAANKGEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 R + + + + + +SA G G ++++ L Sbjct: 124 ----RAADNTILEAYALGLGEPIRISAEHGEGMGELMDVL 159 >gi|294626633|ref|ZP_06705230.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599053|gb|EFF43193.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 439 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA+ + T VR I S I DT G + Sbjct: 201 IALVGYTNAGKSTLFNVLTGAEAYVADQLFATLDPTVRRIALPGGSAI-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ VVD+ L+ + + ++L+ + +L+ N Sbjct: 258 DLPHELVAAFRSTLSEARDADLLLHVVDAADPLREERILQVDEVLQAVGAGDLPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID ++ + A+ + VSA G G +++ + L L L Sbjct: 318 KIDKIEGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQRLDL 367 >gi|255320708|ref|ZP_05361885.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SK82] gi|255302324|gb|EET81564.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SK82] Length = 451 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 14/144 (9%) Query: 15 FVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 VQ ++R G V + G NAGKS+L+N G +IVT TTR ++ +S Sbjct: 202 LVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGNDRAIVTDIAGTTRDVLHEKISL 261 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLK 124 I DT G+ D + IR + I+ AD++ LV D LK+ + + Sbjct: 262 NGLPITLTDTAGLRETGDIVEQEGIRRAIKEIEQADLLLLVYDLSQGEDPLKLAQNYFAE 321 Query: 125 EIAKRSSRLILILNKIDC--VKPE 146 + + RLILI NK D V+PE Sbjct: 322 HLEPK--RLILIGNKCDLIGVQPE 343 >gi|167623303|ref|YP_001673597.1| GTP-binding protein EngA [Shewanella halifaxensis HAW-EB4] gi|189037161|sp|B0TLI8|DER_SHEHH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167353325|gb|ABZ75938.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4] Length = 490 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NK+D + Sbjct: 64 EEGIETRMAEQSLAAIEEADVVLFLTDARAGLTAADLAIAQHLRSREKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + AE + + + + + ++A +G G +++ Y LAP+ Sbjct: 124 DADSAC--AEFWS--LGLGEVYQMAAAQGRGVTNMIEY-----SLAPYA 163 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + + V +DT G+ Sbjct: 202 LAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERQGREYVLIDTAGVRRRS 261 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ +++V LV+D+ + LL + L++ +NK D Sbjct: 262 KVHETVEKFSVIKTLKAVEDSNVVLLVIDAREGIAEQDLGLLGFVLNAGRALVIAVNKWD 321 Query: 142 CVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + +R+ + E+ +L FI+ + +SA G G Sbjct: 322 GIDQNVKDRV--KTELDRRLGFIDFARIHFISALHGTGV 358 >gi|92117387|ref|YP_577116.1| GTP-binding protein, HSR1-related [Nitrobacter hamburgensis X14] gi|91800281|gb|ABE62656.1| GTP-binding protein HflX [Nitrobacter hamburgensis X14] Length = 444 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 7/163 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A+V T +R + + + DT G + Sbjct: 212 VVALVGYTNAGKSTLFNRLTRAEVQAADMLFATLDPTLRALALPHGGKAMLSDTVGFISN 271 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA---KRSSRLILI 136 + R + + AD++ V D SH + + HD +L+++ +R++ + Sbjct: 272 LPTQLVAAFRATLEEVMEADVILHVRDISHEDAEAQQHDVEAVLRQLGIDPGHGARILEV 331 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NKID ++ IA + F+VSA G G D +L Sbjct: 332 WNKIDRFDADQRENLENIAVRRSAEVPCFLVSAETGEGLDTLL 374 >gi|114046809|ref|YP_737359.1| GTP-binding protein EngA [Shewanella sp. MR-7] gi|123131595|sp|Q0HX53|DER_SHESR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|113888251|gb|ABI42302.1| small GTP-binding protein [Shewanella sp. MR-7] Length = 488 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 4/186 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NKID + Sbjct: 64 EEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSRQKTTFVVANKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 + AE + + + + + ++A +G G +++ Y + A + + ++ Sbjct: 124 DADSAC--AEFWS--LGLGEVYQMAAAQGRGVTNMIEYALTPYAEAMGIERQGEEEEVDE 179 Query: 204 FHFTAE 209 +T E Sbjct: 180 RQYTEE 185 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + V +DT G+ + Sbjct: 201 LAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGV-RRR 259 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+++ + S ++ A++V L++D+ + LL L++ +NK Sbjct: 260 SKVHEVIEKFSVIKTLKAVEDANVVLLIIDAREGVAEQDLGLLGFALNAGRALVIAVNKW 319 Query: 141 DCVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + +R+ ++E+ +L FI+ + +SA G G Sbjct: 320 DGIDQGIKDRV--KSELDRRLGFIDFARIHFISALHGTGV 357 >gi|291522204|emb|CBK80497.1| ribosome-associated GTPase EngA [Coprococcus catus GD/7] Length = 441 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 8/157 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKS+L+N+ G IV++ TTR + ++ + VF+DT G+ Sbjct: 180 VAIVGKPNVGKSSLINKLTGENRVIVSNIAGTTRDAIDTVIKHNGKEYVFIDTAGLRRKS 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + S ++ A++V L++D+ + + +R +I+ +NK D Sbjct: 240 KIKEDIERYSIIRTVSAVERANVVVLMIDAKEGVTEQDAKIAGIAHERGKGMIIAVNKWD 299 Query: 142 CV-KPERLLEQ--AEIANKLVFIEKTFM--VSATKGH 173 + K ++ + + ++ KL F+ M +SA G Sbjct: 300 AIEKDDKTMNKFTKDVREKLAFMPYAEMLFISAETGQ 336 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA++G N GKSTL N G ++SIV TR + V+ +Q +DT GI + Sbjct: 5 IVAIIGRPNVGKSTLFNALAGQQISIVKDTPGVTRDRIYADVNWLNTQFTMIDTGGIEPS 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 D K M + I+ AD++ + D R+ V+ + + +RS + ++L++NK+D Sbjct: 65 TNDLILKSMREQAEIAIETADVIIFLTDV-RQGVVDADFQVANMIRRSGKPVVLVVNKVD 123 Query: 142 CVK 144 K Sbjct: 124 NFK 126 >gi|317128566|ref|YP_004094848.1| ribosome-associated GTPase EngA [Bacillus cellulosilyticus DSM 2522] gi|315473514|gb|ADU30117.1| ribosome-associated GTPase EngA [Bacillus cellulosilyticus DSM 2522] Length = 438 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 19/183 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +++IV K TR + + +DT GI Sbjct: 5 VLAIVGRPNVGKSTIFNRIVGERIAIVEDKPGVTRDRIYSSAEWLNKEFNIIDTGGI--- 61 Query: 84 KDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 + + LM+++ + I+ AD++C +V+ RE + + + +I RS + ++L +NK Sbjct: 62 EINDEPLMVQMRYQAELAIEEADVICFIVNG-REGITSADEEVAQILFRSKKPIVLGVNK 120 Query: 140 IDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSA 195 +D P +RL E + I +S + G G D+L+ + P VY Sbjct: 121 MD--DPSMHDRLYEFYSLG-----IGDPKPISGSHGIGLGDLLDEVIKQFPSQTEDVYDE 173 Query: 196 DQI 198 D I Sbjct: 174 DTI 176 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N GKS+L N +G + IV+ TTR + S+ V +DT G+ Sbjct: 178 ISIIGRPNVGKSSLTNAILGEERVIVSDIPGTTRDAIDTPFSKDGQDYVVIDTAGMRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I+ +D+V +V++ + + + +IL++NK D Sbjct: 238 KVYESTEKYSVLRALRAIERSDVVLMVINGEEGMIEQDKKIAGYAHEAGRAVILVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 VVE 300 >gi|325981901|ref|YP_004294303.1| ribosome-associated GTPase EngA [Nitrosomonas sp. AL212] gi|325531420|gb|ADZ26141.1| ribosome-associated GTPase EngA [Nitrosomonas sp. AL212] Length = 464 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 20/200 (10%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S+ +A+VG N GKSTL+N +G + I + TTR + + K+ Q +DT G Sbjct: 172 SKHPKIAIVGRPNVGKSTLINTLLGEERVIAFDQPGTTRDSIYVDFTHKDKQYTLIDTAG 231 Query: 80 IFNAKDSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 + + H+ + + S I+ A++V L++D+ E+ + I + L++ Sbjct: 232 L-RRRGQVHETIEKFSAIKTLQAIEDANVVVLILDARNEISDQDAHIAGFILETGRALVI 290 Query: 136 ILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +NK D + +R +++++ KL F+ + +SA G G + LP Sbjct: 291 AINKWDGLDEYQRATIKSDLSRKLAFLSFAQLHYISALHGTGMKKL-------LPSIDIA 343 Query: 193 YSADQISDLPMFHFTAEITR 212 Y+A ++DLP T ++TR Sbjct: 344 YAA-AMADLP----TPKLTR 358 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + LVG N GKSTL NR + +IV TR G + + +DT G Sbjct: 4 TLVLVGRPNVGKSTLFNRLTRTRDAIVADIPGLTRDRHYGAGRVGDKPYLVVDTGGFEPV 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ M + + I AD V +VD + L + + +++ K +++L++NK + Sbjct: 64 IKEGVLYAMAKQTIQAIDEADKVLFIVDGRQGLTAHDKIIAEQLRKSGQKILLVVNKTEG 123 Query: 143 V 143 + Sbjct: 124 M 124 >gi|300312251|ref|YP_003776343.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] gi|300075036|gb|ADJ64435.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 374 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 13/172 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKST+ N A V T + R + + +V DT G Sbjct: 191 SVSLVGYTNAGKSTIFNALAKAGVYAANQLFATLDTTSRRVYLGEVGHVVISDTVGFI-- 248 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILIL 137 ++ H+L+ R + HAD++ VVD+ +++ ++ +LKEI IL+ Sbjct: 249 RELPHQLVEAFRATLEETIHADLLLHVVDAASPVRMEQIEEVNLVLKEIGADHVPQILVW 308 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 NKID E +E E I++ F VSA G G D + + ++L A Sbjct: 309 NKIDAAGLEPTVEYDEYGK----IQRVF-VSAKSGAGLDLLREAIAASLKAA 355 >gi|292806640|gb|ADE42450.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----IPKSFNISVSHNRGISALIDAILSALNL 168 >gi|254423770|ref|ZP_05037488.1| GTPase, putative [Synechococcus sp. PCC 7335] gi|196191259|gb|EDX86223.1| GTPase, putative [Synechococcus sp. PCC 7335] Length = 449 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS----EKESQIVFLDTPGI 80 VA+VG N GKS+++N FVG SIV+ TTR + +V+ + + + +DT GI Sbjct: 162 VAIVGRPNVGKSSILNAFVGENRSIVSPISGTTRDAIDMVVTRGDGDDQKRYRLIDTAGI 221 Query: 81 FNAKD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 K+ I ++ IK AD+V LV+D+ + L I + ++++ Sbjct: 222 RKKKNVDFGPEYFGINRAFKAIKRADVVLLVIDALDGVTEQDQKLAGRIEEEGRACVIVV 281 Query: 138 NKIDCV 143 NK D + Sbjct: 282 NKWDAI 287 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 8/163 (4%) Query: 38 LVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNAKDSYHKLMIRLSW 96 LVNRF G + SIV + TR K+ + + +DT G +F+ + + + Sbjct: 2 LVNRFAGGRQSIVFDQPGVTRDRTYQPAFWKDREFLAVDTGGLVFDDDTEFLPYIREQAM 61 Query: 97 STIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEI 154 + + A VVD ++ + +EIA RS + ++L C P+ + QA Sbjct: 62 TALSEAAAALFVVDG----QIGPTEGDQEIASWMRSQNIPVVLAVNKCESPDEGIIQAAQ 117 Query: 155 ANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 +L E + VSA G G ++L+ L LP A + + D+ Sbjct: 118 FWELGLGE-PYAVSAIHGSGTGELLDALVEHLPPADQIETVDE 159 >gi|122700607|emb|CAL87892.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 17/173 (9%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ Sbjct: 7 SKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM- 65 Query: 82 NAKDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLIL 135 AKD+ I+ L+ + +D++ VVD S ++K L +E+ K + L Sbjct: 66 -AKDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFL 119 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++NKID K ++ A I K+F +S + G +++ + +TL L Sbjct: 120 VINKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAILNTLNL 168 >gi|113969576|ref|YP_733369.1| GTP-binding protein EngA [Shewanella sp. MR-4] gi|117919682|ref|YP_868874.1| GTP-binding protein EngA [Shewanella sp. ANA-3] gi|123029832|sp|Q0HKV5|DER_SHESM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225858|sp|A0KUJ9|DER_SHESA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|113884260|gb|ABI38312.1| small GTP-binding protein [Shewanella sp. MR-4] gi|117612014|gb|ABK47468.1| small GTP-binding protein [Shewanella sp. ANA-3] Length = 488 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 4/186 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NKID + Sbjct: 64 EEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSRQKTTFVVANKIDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPM 203 + AE + + + + + ++A +G G +++ Y + A + + ++ Sbjct: 124 DADSAC--AEFWS--LGLGEVYQMAAAQGRGVTNMIEYALTPYAEAMGIERQGEEEEVDE 179 Query: 204 FHFTAE 209 +T E Sbjct: 180 RQYTEE 185 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + V +DT G+ + Sbjct: 201 LAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGV-RRR 259 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+++ + S ++ A++V L++D+ + LL L++ +NK Sbjct: 260 SKVHEVIEKFSVIKTLKAVEDANVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNKW 319 Query: 141 DCVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + +R+ ++E+ +L FI+ + +SA G G Sbjct: 320 DGIDQGIKDRV--KSELDRRLGFIDFARIHFISALHGTGV 357 >gi|126695749|ref|YP_001090635.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9301] gi|166225836|sp|A3PBA9|DER_PROM0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|126542792|gb|ABO17034.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9301] Length = 457 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +QD+ ++++G N GKS+L+N G K +IV+ TT + ++ + ++ + Sbjct: 170 IQDDEEKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKII 229 Query: 76 DTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI N K I ++ +I +D+ LV+D+ + L I ++ Sbjct: 230 DTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQDQKLAGRIEEQGRA 289 Query: 133 LILILNKIDCV-KPERLLEQA--EIANKLVFI--EKTFMVSATKGHGCDDVLNY 181 I+++NK D V K + Q E+ +KL F+ K +SA G D++ + Sbjct: 290 CIIVVNKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQRVDNIFEH 343 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR + +IV K TR S + +DT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 84 KDSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS IR + ++ A + LVVD ++ + + K + S + I+ +NK C Sbjct: 65 DDSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + A KL E VSA G G D+L+ + LP Sbjct: 123 ESTTLGISLASEFWKLGLGEPN-PVSAIHGSGTGDLLDLVIGELP 166 >gi|122701627|emb|CAL88203.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + EQ+ A I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEK---EQS-YAFSSFGIPKSFNISVSHNRGISALIDAVLSALNL 168 >gi|122700721|emb|CAL87949.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSVLDL 168 >gi|317013217|gb|ADU83825.1| tRNA modification GTPase TrmE [Helicobacter pylori Lithuania75] Length = 450 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDFV---QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF + ++ +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNTQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 I+ + ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEIIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|262282140|ref|ZP_06059909.1| GTP-binding protein engA [Streptococcus sp. 2_1_36FAA] gi|262262594|gb|EEY81291.1| GTP-binding protein engA [Streptococcus sp. 2_1_36FAA] Length = 436 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV + TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVENVEGVTRDRIYATADWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD + VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADAIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + F VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|122701421|emb|CAL88100.1| GTPase [Helicobacter pylori] gi|122701485|emb|CAL88132.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|93004276|gb|ABE97058.1| YphC [Helicobacter pylori] gi|122700717|emb|CAL87947.1| GTPase [Helicobacter pylori] gi|122701717|emb|CAL88248.1| GTPase [Helicobacter pylori] gi|122702179|emb|CAL88280.1| GTPase [Helicobacter pylori] gi|195954219|gb|ACG58815.1| YphC [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDL 168 >gi|329297776|ref|ZP_08255112.1| tRNA modification GTPase TrmE [Plautia stali symbiont] Length = 454 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 279 DEVERIGIERAWQEIEQADRVLFMVDG 305 >gi|330818728|ref|YP_004362433.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3] gi|327371121|gb|AEA62477.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3] Length = 468 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 14/148 (9%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLARIRERLAQVLGDARQGALLREGMSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ L Sbjct: 261 TRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDAQTGLG 320 Query: 117 VNIHDLLKEIAKR---SSRLILILNKID 141 + IA+R ++ + NK D Sbjct: 321 TED----RAIAERFPAGVPVVRVFNKTD 344 >gi|308064209|gb|ADO06096.1| tRNA modification GTPase TrmE [Helicobacter pylori Sat464] Length = 450 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|122701479|emb|CAL88129.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDLNP 170 >gi|122700683|emb|CAL87930.1| GTPase [Helicobacter pylori] gi|122702235|emb|CAL88308.1| GTPase [Helicobacter pylori] gi|122702661|emb|CAL88520.1| GTPase [Helicobacter pylori] gi|242255832|gb|ACS88900.1| GTPase [Helicobacter pylori] gi|242255862|gb|ACS88915.1| GTPase [Helicobacter pylori] gi|242255864|gb|ACS88916.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|90194070|gb|ABD92596.1| ThdF [Gallibacterium anatis] Length = 436 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++ G V + G NAGKS+L+N G +IVT TTR ++R + Sbjct: 192 VQSQAKQGSLLREGMKVVIAGRPNAGKSSLLNALSGRDAAIVTDVAGTTRDVLREHIHLD 251 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + +DT G+ A D ++ I +W I AD V ++DS Sbjct: 252 GMPLHIIDTAGLRTATDEVERIGIERAWQEIDQADRVLFMLDS 294 >gi|152967059|ref|YP_001362843.1| GTP-binding protein EngA [Kineococcus radiotolerans SRS30216] gi|151361576|gb|ABS04579.1| small GTP-binding protein [Kineococcus radiotolerans SRS30216] Length = 496 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 61 VLAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYPANWAGRDFTLVDTGGWEAK 120 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + I+ AD V VVD + +++ + + + LI NK+D Sbjct: 121 AEGLNLAVADQAELAIELADAVMFVVDGTVGATASDEQVVRLLRRSGRPVTLIANKVDGP 180 Query: 144 KPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + Q +A +L + + + VSA G G D L+ TLP Sbjct: 181 R------QEALATELWGLGLGEPHPVSALHGRGTGDALDAAVKTLP 220 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 12/145 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VAL+G N GKS+++N+ G++ +V TTR V I+ F+DT GI Sbjct: 238 VALLGRPNVGKSSMLNKLAGSERVVVHPTAGTTRDPVDEIIELGGRTWRFVDTAGIRRRV 297 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ ++VD+ + ++ + + L++ N Sbjct: 298 HLTKGADFYASLRTQ---TALEKAEVAVVLVDASVPIAEQDIRVISTVVESGRALVVAYN 354 Query: 139 KIDCVKPER--LLEQAEIANKLVFI 161 K D ER LE+ EI +LV I Sbjct: 355 KWDLTDEERRHYLER-EIEKELVQI 378 >gi|297380037|gb|ADI34924.1| GTP-binding protein EngA [Helicobacter pylori v225d] Length = 461 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +S + G +++ + S L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAILSALDL 169 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + IV LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIVLLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|239625640|ref|ZP_04668671.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519870|gb|EEQ59736.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 424 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 16/181 (8%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E+T KDF A+VG TNAGKSTL+NR GA + T R Sbjct: 187 EVTRQQREKDFAL------TAAIVGYTNAGKSTLLNRLTGAGILAEDKLFATLDPTTRSF 240 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI---KHADIVCLVVD-SHRELKVNIH 120 V E QI+ DT G F K +H +I ST+ +++DI+ VVD S+ ++ + +H Sbjct: 241 VMEDGQQILLTDTVG-FIRKLPHH--LIEAFKSTLEEARYSDIILHVVDCSNPQMDMQMH 297 Query: 121 ---DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 + L+E+ + + NK D + E + + + +SA G G D+ Sbjct: 298 VVKETLRELEIVDKTTVTVFNKTDRLNEEGTEDGMHPVPRDFSSDYQVRISARTGEGIDE 357 Query: 178 V 178 + Sbjct: 358 L 358 >gi|15669598|ref|NP_248411.1| GTP1/Obg family GTP-binding protein [Methanocaldococcus jannaschii DSM 2661] gi|37999513|sp|Q58803|Y1408_METJA RecName: Full=Uncharacterized protein MJ1408 gi|2826405|gb|AAB99416.1| GTP-binding protein, member of GTP1/OBG-family [Methanocaldococcus jannaschii DSM 2661] Length = 350 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 17/163 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N GKSTL+ + GA V I ++ TT+ I G + E I +DTPG+ + Sbjct: 172 TVVIAGYPNVGKSTLLKKLTGADVEINSYPF-TTKGINVGYIGE----IQMVDTPGLLD- 225 Query: 84 KDSYHKLMIRLSWSTIKH--ADIVCLVVDSHRELKVNIHD---LLKEIAKR-SSRLILIL 137 + Y + I L + A+++ ++D+ I + LLKEI + +++ + Sbjct: 226 RPLYERNDIELQAILALNYLANLILFIIDASEFCGYTIEEQINLLKEIKDLFKAPIVVAI 285 Query: 138 NKIDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDV 178 NKID V ER+ EI KL V IE+ +SA K G D++ Sbjct: 286 NKIDLVDEERV---KEIEEKLKEVGIEEILKISADKDIGLDEL 325 >gi|326560782|gb|EGE11149.1| GTP-binding protein EngA [Moraxella catarrhalis 103P14B1] gi|326563523|gb|EGE13782.1| GTP-binding protein EngA [Moraxella catarrhalis 12P80B1] Length = 472 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKSTL N+ ++ ++V TR G + + +DT GI Sbjct: 6 VVALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEM 65 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + M S++ I ADIV VVD+ L ++ + + L+ NK+ Sbjct: 66 DDGSGNIDDYMATQSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKM 125 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D V E + + + +A+ G G ++L L + +P Sbjct: 126 DGVHEAAYAEFFALG-----FGEPYATAASHGRGVTNLLESLTADMP 167 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI--- 80 +A++G N GKSTLVNR +G +V TTR + I E+E + V +DT G+ Sbjct: 182 LAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIY-IPFEREGRSYVLIDTAGVRRR 240 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + + IK A++V +V+D+ + +L +++ +NK Sbjct: 241 GRIDEKVEKFSVVKTLQAIKDANVVVVVIDAKEGIVDQDLHMLGYALDAGRAIVVAINKW 300 Query: 141 DCV-KPERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + + ++ + EI + F+ K ++SA G+G Sbjct: 301 DGLSQDQKDSVKIEIDRRFNFVPWVKIHLISALYGNGV 338 >gi|304413431|ref|ZP_07394904.1| putative GTPase [Candidatus Regiella insecticola LSR1] gi|304284274|gb|EFL92667.1| putative GTPase [Candidatus Regiella insecticola LSR1] Length = 457 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 9/163 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ Sbjct: 225 VVIAGRPNAGKSSLLNALAGKESAIVTAVAGTTRDVLREYIHIDGMPLHIIDTAGLRETS 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR-ELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K+ I +W I++AD + +VDS E + +L+ + + +I++ NKID Sbjct: 285 EIIEKIGIERAWHEIENADSLLFIVDSSSTEATLPDPELIARLPT-TLPIIVVRNKIDMT 343 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 EQ + + +SA G G +++ YL ++ Sbjct: 344 D-----EQCGLTEVKGY--PVIRLSAKTGQGIENLQQYLKKSM 379 >gi|229593496|ref|YP_002875615.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens SBW25] gi|229365362|emb|CAY53749.1| probable tRNA modification GTPase [Pseudomonas fluorescens SBW25] Length = 456 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR I+R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 D K+ + + I AD V LVVD+ V+ L E ++ +++ LI NK Sbjct: 278 DDQVEKIGVERALKAIGEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|153873147|ref|ZP_02001823.1| tRNA modification GTPase [Beggiatoa sp. PS] gi|152070386|gb|EDN68176.1| tRNA modification GTPase [Beggiatoa sp. PS] Length = 444 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 15/165 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + LVG N GKS+L+N G + +IVT TTR +VR + + DT G+ + Sbjct: 219 IVLVGEPNVGKSSLLNSLAGRETAIVTPLPGTTRDVVRDQIQINGMPLHITDTAGLRETE 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH-DLLKEIAKRSSRLILILNKIDCV 143 D IR + +K AD+V +++D R +IH +LL E+ K +++ NKID Sbjct: 279 DLVELEGIRRTKLALKEADLVIVLLDD-RHSNDSIHANLLAELDKPP---LIVRNKIDLS 334 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + + E +SA G G + + +Y + L Sbjct: 335 GHRAGMNE----------EGILYLSAKTGEGIEQLKDYFTQKMGL 369 >gi|122702829|emb|CAL88604.1| GTPase [Helicobacter pylori] gi|195954197|gb|ACG58804.1| YphC [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNHNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALDL 168 >gi|122702705|emb|CAL88542.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAILSALDL 168 >gi|33862476|ref|NP_894036.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9313] gi|41017013|sp|Q7V8X0|DER_PROMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33640589|emb|CAE20378.1| GTP-binding protein (HSR1-related):AAA ATPase superfamily [Prochlorococcus marinus str. MIT 9313] Length = 455 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV K T R+ G ++E ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVDDKPGVTRDRTYQDGFWGDREFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + + A + ++VD + + + + + + ++ +NK Sbjct: 64 DDDSEFLPEIREQANLALAEASVALVIVDGQQGVTAADESIAEWLRTQPCPTLVAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C P++ L A +L E F +SA G G D+L+ + S LP Sbjct: 122 CESPDQGLAMAAEFWRLGLGEP-FPISAIHGAGTGDLLDRVLSLLP 166 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N G +IV+ TTR + + + +DT GI + Sbjct: 180 MAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDTIDTRLEREGHPWRLIDTAGIRRRR 239 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I S+ I+ +D+ LV+D+ + L I +L++NK D Sbjct: 240 SVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEDDGRACVLVVNKWD 299 Query: 142 CVKPER---LLEQAEIANKLVFIEKTFMV--SATKGHGCDDVL 179 V+ + + + E+ KL F++ M+ SA G + + Sbjct: 300 AVEKDSHTMPMVEKELRAKLYFLDWATMLFTSALTGQRVESIF 342 >gi|319943736|ref|ZP_08018017.1| GTP-binding protein EngA [Lautropia mirabilis ATCC 51599] gi|319742969|gb|EFV95375.1| GTP-binding protein EngA [Lautropia mirabilis ATCC 51599] Length = 504 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 5/151 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 +ALVG N GKSTL NR ++ ++V + TR G + ++V +DT G A Sbjct: 8 IALVGRPNVGKSTLFNRLTRSRDALVANIPGLTRDRHYGSATLDGQRVVLIDTGGFEPVA 67 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M R + + AD+V VVD + L ++ +E+ + + +++L +NK C Sbjct: 68 ATGVAEQMARQTRQAVIEADVVVFVVDGRQGLLARDEEIAQELRRTARKVVLAVNK--CE 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 R + AE + + +SAT G G Sbjct: 126 GISRPVAAAEF--HALGLGVPMPISATHGDG 154 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG N GKSTL+N +G + I ++ TTR + + +DT G+ Sbjct: 240 VAVVGRPNGGKSTLINALLGEERLIAFNQPGTTRDSITVDFRYRNRDYQLIDTAGLRRRG 299 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ ++ L++D+ + + I + L++ LNK D Sbjct: 300 KVHETVEKFSVVKTLQAIEDCNVAVLMIDAADGISEQDSAIAGYILEAGRALVIALNKWD 359 Query: 142 CVKP-ERLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVL 179 V ER E +L F++ M +SA K D ++ Sbjct: 360 AVPADERRNVLQECQRRLYFLDWAPMLTISALKNRALDKLM 400 >gi|315656788|ref|ZP_07909675.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492743|gb|EFU82347.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 523 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V + TR V +DT G Sbjct: 88 TLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTGGWDVG 147 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + I AD VVD++ L+K + + ++L+ NK+D Sbjct: 148 VSGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDSE 207 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + A + N + + + + +SA G G D+L+ + LP Sbjct: 208 RQE--ADAAALWN--LGMGQPYPISALHGRGTGDLLDAILQVLP 247 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 9/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N GA ++V+ TTR V ++ Q VF+DT G+ Sbjct: 264 VALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRRV 323 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + I++AD+ +++D L ++ ++ + L+L+ N Sbjct: 324 KRSVGADYYSVLRTQ---AAIENADVALVLLDGGEPLTEQDVRVVNQVIEAGRALVLVNN 380 Query: 139 KIDCVKPERLLE 150 K D V R E Sbjct: 381 KWDLVDEYRQGE 392 >gi|227498804|ref|ZP_03928944.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp. D21] gi|226904256|gb|EEH90174.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp. D21] Length = 455 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+NR + +IV++ TTR I+ ++ +V DT G+ + + Sbjct: 221 IAIVGRPNVGKSSLLNRLLQTDRAIVSNIPGTTRDIIEEQMTLDGIPLVLTDTAGLRDTE 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ ++ S + ++ A++V +V+DS L LL + R +++LNK D Sbjct: 281 DYVEQIGVKRSRAILEDAELVLVVLDSASPLTDEDRKLLAAVKNRPH--LVLLNKSD 335 >gi|122701575|emb|CAL88177.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122700689|emb|CAL87933.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|49529777|emb|CAG67489.1| putative GTP-binding protein EngA [Acinetobacter sp. ADP1] Length = 478 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 4/174 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D + S +AL+G N GKSTL N+ ++ ++V TR G + + Sbjct: 3 DLEKGYSMKPVIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFI 62 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DT GI + M S + I ADI+ VVD+ L + + +EI ++ Sbjct: 63 VVDTGGIGEGEAGIDAYMAEQSKTAIHEADIIIFVVDARAGLLASDEQIAREIRSLGKKV 122 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 L+ NK+D V E + + KL F E V+A+ G G +L + +P Sbjct: 123 YLVANKVDGVHAEAAVVE---FYKLGFGE-PLHVAASHGRGVAQMLEDVLVDVP 172 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +A++G N GKSTLVNR +G + + + TTR + Q +DT G+ Sbjct: 188 LAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGV 243 >gi|15644195|ref|NP_229245.1| GTP-binding protein EngA [Thermotoga maritima MSB8] gi|8134441|sp|Q9X1F8|DER_THEMA RecName: Full=GTPase Der; Short=TmDer; AltName: Full=GTP-binding protein EngA gi|4982010|gb|AAD36514.1|AE001796_6 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 439 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 8/132 (6%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 V +VG N GKSTL N+ V K +IV + TR V+ V +DT G+F Sbjct: 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N +D + M ++ + I+ AD+V VVD R + L + K + IL+ NK + Sbjct: 62 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 121 Query: 142 C-------VKPE 146 VKPE Sbjct: 122 NLREFEREVKPE 133 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 9/165 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N + + ++V+ TTR V V + VF+DT G+ Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 242 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + S +I+ AD+V +V+D+ + + + + +R +++ NK Sbjct: 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRIAGLVERRGRASVVVFNKW 302 Query: 141 DCV--KPERLLEQAEI-ANKLVFIEKTFMV--SATKGHGCDDVLN 180 D V + +R E ++ KL FI+ + ++ SA KG D V++ Sbjct: 303 DLVEHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRVID 347 >gi|255545636|ref|XP_002513878.1| gtpase mss1/trme, putative [Ricinus communis] gi|223546964|gb|EEF48461.1| gtpase mss1/trme, putative [Ricinus communis] Length = 557 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG N GKS+L+N + ++ +IVT TTR +V V+ + LDT GI Sbjct: 313 IALVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEAGVTVGGIPVTLLDTAGIRETD 372 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR------SSRLILILN 138 D K+ + S + AD++ L + + +LL I S+ ++L +N Sbjct: 373 DIVEKIGVERSEAVAMGADVIILTISAFDGWTSEDSELLSRIESNKKSVGSSTPVVLAIN 432 Query: 139 KID 141 KID Sbjct: 433 KID 435 >gi|157737854|ref|YP_001490538.1| tRNA modification GTPase TrmE [Arcobacter butzleri RM4018] gi|205829054|sp|A8EV95|MNME_ARCB4 RecName: Full=tRNA modification GTPase mnmE gi|157699708|gb|ABV67868.1| tRNA modification GTPase [Arcobacter butzleri RM4018] Length = 446 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 5/120 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N+ + +I++ TTR + V I +DT GI +A Sbjct: 219 VAIIGKPNVGKSSLLNKLLNFDRAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRDAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKID 141 D K+ I S I ADIV + D+ + + I DL+KE + + ++I++LNK D Sbjct: 279 DVIEKIGIEKSIQAINEADIVIALFDNSKICDDEDKKILDLIKENSDK--KVIVVLNKSD 336 >gi|27262204|gb|AAN87383.1| thiopene and furan oxidation protein ThdF [Heliobacillus mobilis] Length = 472 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 11/155 (7%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G N GKS+L+N + + +IVT TTR + + + +DT GI +D Sbjct: 229 IAGRPNVGKSSLLNALLDEQRAIVTDIPGTTRDAIEEFIEIGGIPLRLVDTAGIRETEDL 288 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + + ++ AD+V V+D EL + +LL+ + +R S ++++NK D + Sbjct: 289 VEKIGVEKTREYMEKADLVLYVLDGSDELSNDDEELLRSLQERPS--VVLVNKSD-LAIR 345 Query: 147 RLLEQ---AEIANKLVFIEKTFMVSATKGHGCDDV 178 RL EQ A I +KL+ +SA +G G +++ Sbjct: 346 RLDEQQLRAVIGDKLI-----IYMSAKEGWGLEEL 375 >gi|220932765|ref|YP_002509673.1| small GTP-binding protein [Halothermothrix orenii H 168] gi|219994075|gb|ACL70678.1| small GTP-binding protein [Halothermothrix orenii H 168] Length = 411 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G N GKSTL+N ++++V+ TT + + + +V +DT GI + Sbjct: 12 IAVFGRRNVGKSTLINTLTNQELALVSDVPGTTTDPVYKSMELLPLGPVVMIDTAGIDDV 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 S KL I+ + I+ D+ LV+D DL ++ + +++++NKID V Sbjct: 72 G-SLGKLRIKKTREVIRRTDLAILVIDPFHGAGNYEKDLYNKLQDNNIPVVVVINKIDRV 130 Query: 144 KP--ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K + LL++ KL+F VSA G G +++ L + +P Sbjct: 131 KGIKQDLLDKV----KLLFGVTPIKVSAHSGTGIEELREVLVNRVP 172 >gi|332291461|ref|YP_004430070.1| ribosome-associated GTPase EngA [Krokinobacter diaphorus 4H-3-7-5] gi|332169547|gb|AEE18802.1| ribosome-associated GTPase EngA [Krokinobacter diaphorus 4H-3-7-5] Length = 435 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 5/125 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 179 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAMDTKYNRFGFEFNLVDTAGIRRKAK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I+HAD++ LVVD+ R + ++ +A+R+ + I+IL NK D Sbjct: 239 VKEDLEFYSVMRSVRAIEHADVILLVVDATRGFDGQVQNIF-WLAERNRKGIVILVNKWD 297 Query: 142 CVKPE 146 V+ E Sbjct: 298 LVEKE 302 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 5/167 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR V + +IV TR G + +DT G + Sbjct: 2 STIVAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + I AD + +VD + ++ K + + + L +NK+ Sbjct: 62 VGSDDVFEAEIDKQVELAIDEADAIIFMVDVEHGVTGMDEEVAKLLRRSKKPIFLAVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D K R + E N + + + ++AT G G D+L+ + LP Sbjct: 122 DNNK--RAADAVEFYN--LGLGDYYTIAATNGSGTGDLLDAVVEALP 164 >gi|304389543|ref|ZP_07371506.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327353|gb|EFL94588.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 523 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V + TR V +DT G Sbjct: 88 TLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTGGWDVG 147 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + I AD VVD++ L+K + + ++L+ NK+D Sbjct: 148 VSGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDSE 207 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + A + N + + + + +SA G G D+L+ + LP Sbjct: 208 RQE--ADAAALWN--LGMGQPYPISALHGRGTGDLLDAILQVLP 247 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 9/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N GA ++V+ TTR V ++ Q VF+DT G+ Sbjct: 264 VALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRRV 323 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + I++AD+ +++D L ++ ++ + L+L+ N Sbjct: 324 KRSVGADYYSVLRTQ---AAIENADVALVLLDGGEPLTEQDVRVVNQVIEAGRALVLVNN 380 Query: 139 KIDCVKPERLLE 150 K D V R E Sbjct: 381 KWDLVDEYRQGE 392 >gi|260433544|ref|ZP_05787515.1| GTP-binding protein HflX [Silicibacter lacuscaerulensis ITI-1157] gi|260417372|gb|EEX10631.1| GTP-binding protein HflX [Silicibacter lacuscaerulensis ITI-1157] Length = 423 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 8/173 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R I +++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRRIELPDGPEVILSDTVGFISN 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIAKRSSRLIL-ILN 138 + R + + AD++ V D SH E + D +L + +R L + N Sbjct: 264 LPTELVAAFRATLEEVLAADLIVHVRDISHPETEEQAEDVRSILASLGVDDTRPQLEVWN 323 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 KID + E ++ + + F +SA G G D +L + + L W Sbjct: 324 KIDLLSDE---DRQAVQARAERDPAVFPISAVTGEGIDPLLTEIATILQGVRW 373 >gi|168208661|ref|ZP_02634286.1| GTP binding protein [Clostridium perfringens B str. ATCC 3626] gi|170712976|gb|EDT25158.1| GTP binding protein [Clostridium perfringens B str. ATCC 3626] Length = 597 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 114/263 (43%), Gaps = 41/263 (15%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ------ 55 E+ +I E + + ++ V+LVG TNAGKSTL N S + + + Sbjct: 343 ELKKIKKIRETQRERRSKDKTSQVSLVGYTNAGKSTLRNTLCAESASTLATQAKDKVFEA 402 Query: 56 -----TTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLV 108 T + R I I DT G + H+L+ + + + ++D++C V Sbjct: 403 DMLFATLDTTTRAIKLPDNRDITLTDTVGFVSKLP--HELVEAFKSTLEEVIYSDLLCHV 460 Query: 109 VDSH----RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE----QAEIANKLVF 160 VD+ +E + + +L E+ S IL+LNKID E+L E + I NK+V Sbjct: 461 VDASSDNAQEEIIAVEKVLGELKALESAKILVLNKIDKADEEKLNELEAKYSSIYNKVVK 520 Query: 161 IEKTFMVSATKGHGCDDVLNYLCSTLPLA----PWV--YSADQISDLPMFHFTAEITREK 214 I SA + DD+L + LP ++ Y+A Q+ + H A +++E+ Sbjct: 521 I------SARERINLDDLLEAISEELPYTLKSKEYIIPYTAQQV--VAYLHRNANVSKEE 572 Query: 215 LFLHLHKEIPYSSCVVTEKWEEK 237 +E Y V E+ E K Sbjct: 573 ----YREEGTYIKAEVDEEVENK 591 >gi|91069816|gb|ABE10748.1| GTP-binding protein [uncultured Prochlorococcus marinus clone ASNC1092] Length = 457 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +QD+ ++++G N GKS+L+N G K +IV+ TT + ++ + ++ + Sbjct: 170 IQDDEEKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKII 229 Query: 76 DTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI N K I ++ +I +D+ LV+D+ + L I ++ Sbjct: 230 DTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQDQKLAGRIEEQGRA 289 Query: 133 LILILNKIDCV-KPERLLEQA--EIANKLVFI--EKTFMVSATKGHGCDDVLNY 181 I+++NK D V K + Q E+ +KL F+ K +SA G D++ + Sbjct: 290 CIIVVNKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQRVDNIFEH 343 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR + +IV K TR S + +DT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 84 KDSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS IR + ++ A + LVVD ++ + + K + S + I+ +NK C Sbjct: 65 DDSEFLPQIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + A KL E VSA G G D+L+ + LP Sbjct: 123 ESTTLGISLASEFWKLGLGEPN-PVSAIHGSGTGDLLDLVIGELP 166 >gi|83652896|gb|ABC36959.1| GTPase family protein [Burkholderia thailandensis E264] Length = 460 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D + G +A+VG N GKSTLVN +G I TTR + Sbjct: 176 EVAYAGQPEESEEDAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 235 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 Q +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 236 DFERNGKQYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 295 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++A KL F+E K +SA + G Sbjct: 296 HIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGA 355 Query: 175 ----CDDVLNYLCSTLP 187 DD LP Sbjct: 356 LMRSVDDAYAAAMKKLP 372 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 19 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPV 78 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 79 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 138 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A+ + + +SA G G D++N Sbjct: 139 MK------YTAVASDFYELGLGDPRAISAAHGDGVTDMIN 172 >gi|327398457|ref|YP_004339326.1| GTPase obg [Hippea maritima DSM 10411] gi|327181086|gb|AEA33267.1| GTPase obg [Hippea maritima DSM 10411] Length = 322 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E KD V + V LVG NAGKS+L+ AK I + T + + G V + Sbjct: 145 GEEKDIVLELKLLADVGLVGFPNAGKSSLIRAVSDAKPEIANYPFTTLQPHL-GYVFFDD 203 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 + D PGI L +R I+ I+ V+D E K LLKE+ + Sbjct: 204 KDFIIADIPGIIEGAHKGKGLGLRF-LKHIERTAILLFVLDITDEPKEKYEKLLKELKEY 262 Query: 130 SSRLI-----LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + L+ + LNKID +++ E+ K +F +K F++SA K G +L ++ Sbjct: 263 NPELLKRKRAIALNKIDLF--DKIDEK---LYKGLFSKKVFLISALKKEGLKPLLKWISE 317 Query: 185 TL 186 L Sbjct: 318 NL 319 >gi|217077738|ref|YP_002335456.1| tRNA modification GTPase TrmE [Thermosipho africanus TCF52B] gi|217037593|gb|ACJ76115.1| tRNA modification GTPase TrmE [Thermosipho africanus TCF52B] Length = 441 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 49/88 (55%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N+GKSTL+N+ + +IVT TTR +++G + V +DT GI Sbjct: 213 VMAIVGKPNSGKSTLLNKLLEEDRAIVTDIPGTTRDVIKGEIDINGIHFVIVDTAGIRET 272 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS 111 D + I+ S ++ ADIV V+DS Sbjct: 273 DDVVESIGIQKSIKELEKADIVLFVLDS 300 >gi|122702735|emb|CAL88557.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + EQA A + K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEK---EQA-YAFSSFGMPKSFNISVSHNRGISALIDAILDTLDL 168 >gi|16801117|ref|NP_471385.1| GTP-binding protein EngA [Listeria innocua Clip11262] gi|26006727|sp|Q92A71|DER_LISIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|16414552|emb|CAC97281.1| lin2051 [Listeria innocua Clip11262] Length = 436 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + I AD++ + + RE + + + +I RS++ ++L +NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNG-REGVTDADEQVAKILYRSNKPIVLAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +Q L F E + +S + G G D+L+ + + P Sbjct: 123 -NPE-MRDQIYDFYSLGFGEP-YPISGSHGLGLGDMLDAVRAHFP 164 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 +L+G N GKS+++N +G IV+ TTR + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K + + I+ +D+V +V+++ ++ + +I+++NK D Sbjct: 239 VYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDA 298 Query: 143 V 143 + Sbjct: 299 I 299 >gi|325927205|ref|ZP_08188466.1| GTP-binding proten HflX [Xanthomonas perforans 91-118] gi|325542433|gb|EGD13914.1| GTP-binding proten HflX [Xanthomonas perforans 91-118] Length = 413 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA+ + T VR I S I DT G + Sbjct: 175 IALVGYTNAGKSTLFNVLTGAEAYVADQLFATLDPTVRRIALPGGSAI-LADTVGFV--R 231 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ VVD+ L+ + + ++L+ + +L+ N Sbjct: 232 DLPHELVAAFRSTLSEARDADLLLHVVDAADPLREERILQVDEVLQAVGAGDLPQLLVFN 291 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID ++ + A+ + VSA G G +++ + L L L Sbjct: 292 KIDKIEGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQRLDL 341 >gi|325294202|ref|YP_004280066.1| tRNA modification GTPase TrmE [Agrobacterium sp. H13-3] gi|325062055|gb|ADY65746.1| tRNA modification GTPase TrmE [Agrobacterium sp. H13-3] Length = 443 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 53/98 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG NAGKSTL+N G V+IVT TTR ++ ++ + DT GI + Sbjct: 223 VALVGEPNAGKSTLLNALSGRDVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTAGIRETQ 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 D K +R + T + AD++ ++ D+ LK +I L Sbjct: 283 DVVEKEGVRRAVLTAETADLILILQDNDSTLKQSIISL 320 >gi|312964013|ref|ZP_07778484.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens WH6] gi|311282048|gb|EFQ60658.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens WH6] Length = 456 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR I+R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 D K+ + + I AD V LVVD+ V+ L E ++ +++ LI NK Sbjct: 278 DDQVEKIGVERALKAIGEADRVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|209549232|ref|YP_002281149.1| GTP-binding proten HflX [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534988|gb|ACI54923.1| GTP-binding proten HflX [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 441 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 33/197 (16%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK-------EIAKRSSRLIL 135 ++ R + + AD++ V D S + + D+++ + A+ + RLI Sbjct: 264 LPTHLVAAFRATLEEVLEADLILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAAKRLIE 323 Query: 136 ILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC--------- 183 + NKID ++PE +++++ A +V VSA G G D +++ + Sbjct: 324 VWNKIDRLEPEVHDTMVQKSAGATNVV------AVSAVSGEGVDTLMDEISRRLSGVMTE 377 Query: 184 -------STLPLAPWVY 193 L L PW+Y Sbjct: 378 TTVRLPVDKLALLPWLY 394 >gi|32186993|gb|AAP73740.1| EngA [Escherichia coli] Length = 369 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 84 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 143 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ K + + I+ A++V LV+D+ + LL I L++++NK D Sbjct: 144 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 203 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 + E + E + +L FI+ + +SA G G ++ Sbjct: 204 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLF 244 >gi|58582568|ref|YP_201584.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624454|ref|YP_451826.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58427162|gb|AAW76199.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368394|dbj|BAE69552.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 439 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA+ + T VR I S I DT G + Sbjct: 201 IALVGYTNAGKSTLFNALTGAEAYVADQLFATLDPTVRRIALPGGSAI-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ +VD+ L+ + + ++L+ + +L+ N Sbjct: 258 DLPHELVAAFRSTLSEARDADLLLHIVDAADPLREERILQVDEVLQAVGAGDLPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID + + A+ + VSA G G +++ + L L L Sbjct: 318 KIDKIDGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQRLDL 367 >gi|2127948|pir||G64475 GTP-binding protein, GTP1/OBG-family - Methanococcus jannaschii Length = 354 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 17/163 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N GKSTL+ + GA V I ++ TT+ I G + E I +DTPG+ + Sbjct: 176 TVVIAGYPNVGKSTLLKKLTGADVEINSYPF-TTKGINVGYIGE----IQMVDTPGLLD- 229 Query: 84 KDSYHKLMIRLSWSTIKH--ADIVCLVVDSHRELKVNIHD---LLKEIAKR-SSRLILIL 137 + Y + I L + A+++ ++D+ I + LLKEI + +++ + Sbjct: 230 RPLYERNDIELQAILALNYLANLILFIIDASEFCGYTIEEQINLLKEIKDLFKAPIVVAI 289 Query: 138 NKIDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDV 178 NKID V ER+ EI KL V IE+ +SA K G D++ Sbjct: 290 NKIDLVDEERV---KEIEEKLKEVGIEEILKISADKDIGLDEL 329 >gi|150390617|ref|YP_001320666.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF] gi|166920095|sp|A6TS39|DER_ALKMQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149950479|gb|ABR49007.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF] Length = 440 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 7/177 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N+ +G ++SIV + TR + V + +DT GI + Sbjct: 5 IVAIVGRPNVGKSTLFNKIIGHRISIVEDQPGVTRDRIYAEVEWLDHYFTLIDTGGIDAD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ M + I+ AD+ +VD L + ++ + + K ++L +NK+D Sbjct: 65 TEEIIPAQMREQAQLAIETADVTVFMVDGRAGLTTSDREVAEMLRKSHKPVLLAMNKVDT 124 Query: 143 V-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + + E E+ I +S+ +G G D+L+ + P V D + Sbjct: 125 SNRLDSFYEFYELG-----IGDPIEISSAQGLGIGDLLDEIVKHFPENKGVIYDDDV 176 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 10/142 (7%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F E+K + D+ VA++G N GKS++VN +G IV+ TTR + ++ Sbjct: 164 FPENKGVIYDDDVI-KVAIIGKPNVGKSSIVNSILGENRVIVSDIAGTTRDAIDTPFNDG 222 Query: 69 ESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDL 122 E Q V +DT G+ K++ K + S + ++ AD+ LV+D+ E + Sbjct: 223 EDQYVLIDTAGLRRKSKIKENIEKYSVIRSIAAVERADVCLLVIDATEGVTEQDTKVAGF 282 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K + I+++NK D ++ Sbjct: 283 SHENGKGT---IIVVNKWDLIE 301 >gi|303248222|ref|ZP_07334485.1| ribosome-associated GTPase EngA [Desulfovibrio fructosovorans JJ] gi|302490360|gb|EFL50271.1| ribosome-associated GTPase EngA [Desulfovibrio fructosovorans JJ] Length = 443 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS+LVN +G + IV+ TTR V + + + VF+DT G+ Sbjct: 183 LAVLGRPNAGKSSLVNELLGQERLIVSDVAGTTRDAVDVALVKNGRRYVFVDTAGVRKRT 242 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + + + + K A++ +V+D+ + V L+ + K + ++ +NKID Sbjct: 243 RITDGLERYSVGKALGSAKRANVAVVVIDATGGVGVQDKRLISYLDKERTPFLIAVNKID 302 Query: 142 CV 143 V Sbjct: 303 LV 304 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL NR +I + TR + V + + +DT G+ F+A Sbjct: 5 VAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELGDRIVTLIDTGGMDFDA 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + ++ + + AD+V +VD + + + D + E +R+ + +I+ +NK+D Sbjct: 65 PEGLERQIVVQAEIALTMADVVLFLVDG-KAGRTAMDDEMAERLRRAGKPVIVAVNKVDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ER+ A + + +SA GHG D+ L LP Sbjct: 124 S--ERI--PALTGDFHAWGFPILPLSAAHGHGLQDLAETLAKALP 164 >gi|257462448|ref|ZP_05626861.1| tRNA modification GTPase TrmE [Fusobacterium sp. D12] Length = 404 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 71/130 (54%), Gaps = 1/130 (0%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + + +IVT TTR ++ +++ K ++ +DT GI + D Sbjct: 172 IIGKPNVGKSSLLNSILREERAIVTQVAGTTRDVIEEVINIKGIPLILVDTAGIRDTTDF 231 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + + S ++ AD+V V+D+ +EL ++ + + + ++I ILNK D K Sbjct: 232 VENIGVMKSKEFLQKADLVLFVLDASQELSKEDREIYISL-QENQKVIGILNKTDLEKKI 290 Query: 147 RLLEQAEIAN 156 ++ ++I N Sbjct: 291 QVSSLSKIKN 300 >gi|298346752|ref|YP_003719439.1| GTP-binding protein EngA [Mobiluncus curtisii ATCC 43063] gi|298236813|gb|ADI67945.1| GTP-binding protein EngA [Mobiluncus curtisii ATCC 43063] Length = 523 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V + TR V +DT G Sbjct: 88 TLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTGGWDVG 147 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + I AD VVD++ L+K + + ++L+ NK+D Sbjct: 148 VSGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDSE 207 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + A + N + + + + +SA G G D+L+ + LP Sbjct: 208 RQE--ADAAALWN--LGMGQPYPISALHGRGTGDLLDAILQVLP 247 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 9/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N GA ++V+ TTR V ++ Q VF+DT G+ Sbjct: 264 VALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRRV 323 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + I++AD+ +++D L ++ ++ + L+L+ N Sbjct: 324 KRSVGADYYSVLRTQ---AAIENADVALVLLDGGEPLTEQDVRVVNQVIEAGRALVLVNN 380 Query: 139 KIDCVKPERLLE 150 K D V R E Sbjct: 381 KWDLVDEYRQGE 392 >gi|110679080|ref|YP_682087.1| GTP-binding protein EngA [Roseobacter denitrificans OCh 114] gi|123065686|sp|Q169E2|DER_ROSDO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|109455196|gb|ABG31401.1| GTP-binding protein [Roseobacter denitrificans OCh 114] Length = 492 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 13/182 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ + Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLEDV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE--IAKRSSRLILILNKI 140 DS M RL+ + ADI +VD+ + + DL+ + KR+ ++L NK Sbjct: 64 TDDSLQGRMRRLTERAVDMADICLFMVDAR--VGITPTDLVFADILRKRAGHVVLAANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + I + + + +SA G G +D+ +L +PLA Y+ D Sbjct: 122 EGAA----ADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTHL---MPLAD-AYAERAAED 173 Query: 201 LP 202 P Sbjct: 174 AP 175 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 31/174 (17%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV--RGIVSEKESQIV---FLDTPG 79 VA+VG NAGKSTLVN+ +G + + TR + R E ++ DT G Sbjct: 203 VAVVGRPNAGKSTLVNQILGEDRLLTGPEAGITRDAISLRTDWVGPEGDVIPMRIFDTAG 262 Query: 80 I---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLIL 135 + ++ KL + +K A++V +++D+ + DL + ++A+R R ++ Sbjct: 263 MRKKAKVQEKLEKLSVGDGLRAVKFAEVVVVLLDA--AIPFEQQDLRIADLAEREGRAVV 320 Query: 136 I-LNKIDCVKP------------ERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +NK D + ERLL Q A VSA G G D Sbjct: 321 VAVNKWDIEENKQAKLNELRESFERLLPQLRGA-------PLVTVSARTGRGLD 367 >gi|329736122|gb|EGG72395.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU045] Length = 459 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + + AD++ V++++ L + L + I ++ +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRNALSEADLILFVLNNNEPLTEDDQTLFEVI--KNEDVIVIINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + + E E+ + I+ + + K G D++ Sbjct: 337 TDLEQRLDVSELREMIGDMPLIQTSML----KQEGIDEL 371 >gi|329939974|ref|ZP_08289256.1| GTP-binding protein HflX [Streptomyces griseoaurantiacus M045] gi|329300800|gb|EGG44696.1| GTP-binding protein HflX [Streptomyces griseoaurantiacus M045] Length = 497 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 10/190 (5%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + ++ VA+ G TNAGKS+L+NR GA V + T V Sbjct: 254 EIAEMKTGREIKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 313 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 314 RRAETPGGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPVPEEQLA 373 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 + ++++++ I+++NK D P L+ Q + N+ ++ VSA G G D+ Sbjct: 374 AVREVIRDVGATDVPEIVVVNKADAADP--LVLQRLLRNE----KRAIAVSARTGRGIDE 427 Query: 178 VLNYLCSTLP 187 +L + + LP Sbjct: 428 LLAVIDAELP 437 >gi|317452845|emb|CBL87858.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|296273895|ref|YP_003656526.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299] gi|296098069|gb|ADG94019.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299] Length = 447 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N+ + +I++ TTR + V I +DT GI A Sbjct: 219 VAIIGKPNVGKSSLLNKLLNFDRAIISDIAGTTRDTIEESVKIGTHIIKIVDTAGIREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ ++ I S S + ADI+ + D+ + + I ++L EI + I++LNKID Sbjct: 279 DTIERIGIEKSLSAVNEADIIISLFDNSKVCDDEDKKILNILDEIENKEK--IIVLNKID 336 >gi|238765479|ref|ZP_04626398.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638] gi|238696303|gb|EEP89101.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638] Length = 454 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 279 DEVERIGIERAWHEIEQADRVLFMVDG 305 >gi|170729246|ref|YP_001763272.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908] gi|205415805|sp|B1KQ64|MNME_SHEWM RecName: Full=tRNA modification GTPase mnmE gi|169814593|gb|ACA89177.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908] Length = 453 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 17/183 (9%) Query: 14 DFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D VQ +++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 200 DSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESAIVTEIAGTTRDVLREHIH 259 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT G+ + D+ + I +W+ I+ AD V +VD V+ ++ + Sbjct: 260 LDGMPLHIIDTAGLRDTDDTVEMIGIERAWAEIETADQVLFMVDGTTTDAVDPREIWPDF 319 Query: 127 AKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R + + ++ NK D + Q F +SA G G + + +L Sbjct: 320 IDRLPKNLGITVVRNKADITGEPLTVTQDH-------GHSVFKISAKTGLGVESLQQHLK 372 Query: 184 STL 186 S + Sbjct: 373 SLM 375 >gi|160903053|ref|YP_001568634.1| small GTP-binding protein [Petrotoga mobilis SJ95] gi|160360697|gb|ABX32311.1| small GTP-binding protein [Petrotoga mobilis SJ95] Length = 460 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V++VG N GKS+L N +G++ +IV+ TTR + +V+ ++ F+DT G+ K Sbjct: 188 VSIVGRPNVGKSSLFNSIIGSERAIVSEIPGTTRDAIDHLVTMGDNTFRFIDTAGM-RKK 246 Query: 85 DSYHKLMIRL-----SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + H I + + + I+ +D+V LVVDS + ++ KR I+ NK Sbjct: 247 STIHYASIEMFSISRTINAIEKSDVVILVVDSTEGITHQDKSIIGIAEKRGKGTIIAFNK 306 Query: 140 IDCV 143 D V Sbjct: 307 WDLV 310 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 V ++G N GKSTL NR +G + SIV TR V + + +DT GIF Sbjct: 5 TVLIIGKPNVGKSTLFNRMIGERKSIVHDMPGVTRDNVSSTIQWDDISFTLVDTCGIFEQ 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D+ + ++ + ++K +V V+D L + + + K +S++IL++NK + Sbjct: 65 PEDNIEERQKKIIFESLKDVSLVIFVIDGKIGLTSEDYHIADYLRKTNSKVILVINKAEN 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + L + EI + L F E VSA +++ + +TL Sbjct: 125 FEKYELEMKPEIYS-LGFGE-GIPVSAEHNKNIFTLMDTIANTL 166 >gi|161723167|ref|YP_442759.2| GTP-binding protein EngA [Burkholderia thailandensis E264] gi|167581710|ref|ZP_02374584.1| GTP-binding protein EngA [Burkholderia thailandensis TXDOH] gi|167619826|ref|ZP_02388457.1| GTP-binding protein EngA [Burkholderia thailandensis Bt4] gi|257138969|ref|ZP_05587231.1| GTP-binding protein EngA [Burkholderia thailandensis E264] Length = 445 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D + G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGQPEESEEDAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 Q +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKQYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++A KL F+E K +SA + G Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGA 340 Query: 175 ----CDDVLNYLCSTLP 187 DD LP Sbjct: 341 LMRSVDDAYAAAMKKLP 357 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A+ + + +SA G G D++N Sbjct: 124 MK------YTAVASDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|163851007|ref|YP_001639050.1| tRNA modification GTPase TrmE [Methylobacterium extorquens PA1] gi|163662612|gb|ABY29979.1| tRNA modification GTPase TrmE [Methylobacterium extorquens PA1] Length = 444 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 23/160 (14%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CV L GA NAGKSTL+N G +IV+ TTR + +V +DT G+ + Sbjct: 226 CVVLAGAPNAGKSTLLNALTGRDAAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRDT 285 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-IHDLLKEIAKRSSRLILILNKIDC 142 D+ ++ + S I+ AD+V +V + E D+ L+L+ K D Sbjct: 286 ADAIEAEGVKRTQSRIRGADLVLHLVPADGETDAGRFADV---------PLLLVRTKTD- 335 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + PE V E +SA G G D +L+ + Sbjct: 336 LAPE------------VPGEGGLAISAVTGAGLDALLDAI 363 >gi|308062155|gb|ADO04043.1| GTP-binding protein EngA [Helicobacter pylori Cuz20] Length = 461 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +S + G +++ + S L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAILSALDL 169 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|291536994|emb|CBL10106.1| tRNA modification GTPase trmE [Roseburia intestinalis M50/1] Length = 411 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG + +IVT TTR ++ ++ + +DT GI D Sbjct: 179 IIGKPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDV 238 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + + AD+ VVD+ +L N ++++ + R + I++LNK D Sbjct: 239 VEKIGVDRAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDR--KAIVLLNKSDL 292 >gi|261837935|gb|ACX97701.1| GTP-binding protein [Helicobacter pylori 51] Length = 461 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +S + G +++ + S L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAILSALDL 169 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|302878616|ref|YP_003847180.1| ribosome-associated GTPase EngA [Gallionella capsiferriformans ES-2] gi|302581405|gb|ADL55416.1| ribosome-associated GTPase EngA [Gallionella capsiferriformans ES-2] Length = 470 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 93/189 (49%), Gaps = 10/189 (5%) Query: 1 MEMGEITFFNEHKDFVQDNS----RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 +E+ EI N ++ V++++ + +A+VG N GKSTLVN +G + I + T Sbjct: 153 VEVIEIALENFPEEIVEEDAVVEDKPPKLAIVGRPNVGKSTLVNAILGEQRVIAFDQPGT 212 Query: 57 TRSIVRGIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 TR + Q +DT G+ +++ K + + I+ A++V LVVD+ Sbjct: 213 TRDSIYIDFERDGKQYTIIDTAGVRRRGKVEEAIEKFSVIKTMQAIEDANVVVLVVDARD 272 Query: 114 ELKVNIHDLLKEIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFI--EKTFMVSAT 170 ++ + + + L+L +NK D + +R + +++I KL F+ K +SA Sbjct: 273 QITEQDAHVADFVLQAGRALVLAVNKWDGLDNHQREMVKSDIERKLHFLGFAKRHYISAL 332 Query: 171 KGHGCDDVL 179 G+G +VL Sbjct: 333 NGNGISNVL 341 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 5/128 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 + LVG N GKSTL NR ++ ++V + TR RG V E+ +V DT G+ Sbjct: 4 TLVLVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGRGRVGERPYLVV--DTGGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AKD M R S + AD+V +VD + ++ K ++L++NK Sbjct: 62 PVAKDGIMFEMARQSRQAVDEADVVLFLVDGRAGCTPQDLIIATQLRKTGKPILLLVNKA 121 Query: 141 DCVKPERL 148 + + R+ Sbjct: 122 EGMARARV 129 >gi|122700889|emb|CAL88033.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|146309632|ref|YP_001190097.1| tRNA modification GTPase TrmE [Pseudomonas mendocina ymp] gi|166234810|sp|A4Y199|MNME_PSEMY RecName: Full=tRNA modification GTPase mnmE gi|145577833|gb|ABP87365.1| tRNA modification GTPase trmE [Pseudomonas mendocina ymp] Length = 455 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 D ++ + + I AD V LVVDS + L E ++ +R+ LI NK Sbjct: 278 DDQVERIGVERALKAIGEADRVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|315655298|ref|ZP_07908198.1| ribosome-associated GTPase EngA [Mobiluncus curtisii ATCC 51333] gi|315490238|gb|EFU79863.1| ribosome-associated GTPase EngA [Mobiluncus curtisii ATCC 51333] Length = 523 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V + TR V +DT G Sbjct: 88 TLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVMYDAHWNGRNFHLVDTGGWDVG 147 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + I AD VVD++ L+K + + ++L+ NK+D Sbjct: 148 VSGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDSE 207 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + A + N + + + + +SA G G D+L+ + LP Sbjct: 208 RQE--ADAAALWN--LGMGQPYPISALHGRGTGDLLDAILQVLP 247 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N GA ++V+ TTR V ++ Q VF+DT G+ Sbjct: 264 VALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRRV 323 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + I++AD+ +++D L ++ ++ + L+L+ N Sbjct: 324 KRSVGADYYSVLRTQ---AAIENADVALVLLDGGEPLTEQDVRVVNQVIEAGRALVLVNN 380 Query: 139 KIDCVKPER 147 K D V R Sbjct: 381 KWDLVDEYR 389 >gi|242255922|gb|ACS88945.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALDL 168 >gi|227873162|ref|ZP_03991453.1| tRNA modification GTP-binding protein TrmE [Oribacterium sinus F0268] gi|227840993|gb|EEJ51332.1| tRNA modification GTP-binding protein TrmE [Oribacterium sinus F0268] Length = 456 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 14/203 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N V A +IV++ TTR V + + +DT GI +D Sbjct: 224 IVGKPNAGKSSLLNCLVKADKAIVSNIPGTTRDTVEEDIRIGSLSLHLIDTAGIRETEDI 283 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ + + I+ AD V LV+D L+ +L + + + +++LNK+D E Sbjct: 284 VEEIGVNRAKEGIEKADCVLLVLDGSLPLEEEDRKILALLEGKKA--VVLLNKMD---KE 338 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDV------LNYLCS-TLPLAPWVYSADQIS 199 +L++ E+ F +SA +G G +++ L Y S + +++S QI+ Sbjct: 339 SILQKEELEKLSGF--PVLPISAKEGRGMEELGQKLEELFYTGSLSFSTETYIHSERQIA 396 Query: 200 DLPMFHFTAEITREKLFLHLHKE 222 L E+ E + L L ++ Sbjct: 397 ALEEAKSALELVLEGIRLKLSED 419 >gi|226939618|ref|YP_002794691.1| GTP-binding protein engA [Laribacter hongkongensis HLHK9] gi|226714544|gb|ACO73682.1| GTP-binding protein engA [Laribacter hongkongensis HLHK9] Length = 415 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 12/172 (6%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI-VFL 75 ++ SR A++G N GKSTLVN +G + I TTR + I E+E + + Sbjct: 126 EETSRHPKFAIIGRPNVGKSTLVNAILGEERVIAFDHPGTTRDSIY-IDFEREGKTYTII 184 Query: 76 DTPGI-FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSS 131 DT G+ AK +S K + + I+ A++ LV+D+ L V+ D L A + Sbjct: 185 DTAGVRRRAKIDESIEKFSVVKTLQAIEDANVCVLVLDA--ALDVSDQDATLAGFALEAG 242 Query: 132 R-LILILNK-IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 R L++ +NK DC + +R+ + IA KL F+E K +SA KG G D+ Sbjct: 243 RALVVAVNKWDDCDEEQRINIKRSIARKLHFLEFAKYHYISALKGQGVADLF 294 >gi|255521525|ref|ZP_05388762.1| GTP-binding protein EngA [Listeria monocytogenes FSL J1-175] Length = 259 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + I AD++ + + RE + + + +I RS++ ++L +NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNG-REGVTDADEQVAKILYRSNKPIVLAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +Q L F E + +S + G G D+L+ + + P Sbjct: 123 -NPE-MRDQIYDFYSLGFGEP-YPISGSHGLGLGDMLDAVRAHFP 164 >gi|261406031|ref|YP_003242272.1| GTP-binding protein EngA [Paenibacillus sp. Y412MC10] gi|329929734|ref|ZP_08283410.1| ribosome biogenesis GTPase Der [Paenibacillus sp. HGF5] gi|261282494|gb|ACX64465.1| ribosome-associated GTPase EngA [Paenibacillus sp. Y412MC10] gi|328935712|gb|EGG32173.1| ribosome biogenesis GTPase Der [Paenibacillus sp. HGF5] Length = 440 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR +G +++IV K TR + G +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRLIGDRLAIVEDKPGITRDRIYGSAEWNGKAFSVIDTGGIEID 64 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D IR+ I+ AD++ + D+ + + ++ + + + +IL +NK+D Sbjct: 65 GDDMILKSIRMQAELAIEEADVIVFMCDAKTGVTQSDEEVAQILFRSGKPVILSVNKVDN 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +K R + E + L F + +S + G G D+L+ + LP Sbjct: 125 LK--RADDIYEFYS-LGFGDPV-GISGSHGTGIGDLLDVVVENLP 165 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL+G N GKS+LVN +G + IV+ TTR + + + V +DT G+ Sbjct: 179 VALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAIDTPFEKDGQRYVLIDTAGMRKRG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I+ AD+V ++++ E +I E K S + ++N Sbjct: 239 KVYETTEKYSVMRAMRAIERADVVLVLINGEEGIIEQDKHIAGYAYEAGKAS---LFVVN 295 Query: 139 KIDCV-KPERLLEQAE 153 K D V K ++ ++Q E Sbjct: 296 KWDMVEKDDKTMQQFE 311 >gi|242255918|gb|ACS88943.1| GTPase [Helicobacter pylori] gi|242255920|gb|ACS88944.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILNALNL 168 >gi|163802477|ref|ZP_02196370.1| GTP-binding protein EngA [Vibrio sp. AND4] gi|159173778|gb|EDP58593.1| GTP-binding protein EngA [Vibrio sp. AND4] Length = 498 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL NR + ++V TR G S +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQASLGEEHEFIVIDTGGIDG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ M S + I AD+V +VD L + + + K +L++NKID Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVNKIDG 123 Query: 143 VKPE 146 + + Sbjct: 124 IDAD 127 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 212 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRG 271 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 272 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 331 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + + E+ +L F++ + +SA G G Sbjct: 332 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGV 368 >gi|122702425|emb|CAL88403.1| GTPase [Helicobacter pylori] gi|122702533|emb|CAL88456.1| GTPase [Helicobacter pylori] gi|122702693|emb|CAL88536.1| GTPase [Helicobacter pylori] gi|292806584|gb|ADE42422.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|330936977|gb|EGH41077.1| GTP-binding protein Der [Pseudomonas syringae pv. pisi str. 1704B] Length = 334 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 L +AE + + + V+ G G +L P Sbjct: 124 DEN--LARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 7/126 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G IV + TTR + E + +DT G+ Sbjct: 198 IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAGVRKRG 257 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 + K + + IK A++V V+D+ RE V+ HDL L A + R L++ LNK Sbjct: 258 KIHEEVEKFSVVKTLQAIKDANVVIFVMDA-REGVVD-HDLNLLGFALEAGRALVIALNK 315 Query: 140 IDCVKP 145 D + P Sbjct: 316 WDGMTP 321 >gi|297181616|gb|ADI17800.1| predicted GTPases [uncultured Sphingobacteriales bacterium HF0130_33B19] Length = 434 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 15/168 (8%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKST+ NRF ++ +I TR G + +DT G Sbjct: 2 SNIVAIVGRPNVGKSTIFNRFTESRQAITDEVSGVTRDRHYGKAEWNGREFSVIDTGGYI 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSS-RLILI 136 D ++ IR I+ A+++ +VD +K I DL +E+ K RS+ +++L Sbjct: 62 KGSDDVFEVEIRKQVELAIEEANVILFLVD----VKAGITDLDQEVVKLLRRSNKKVVLA 117 Query: 137 LNKIDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 +NK+D K LL+ A E N + + F +++ G G ++L+ L Sbjct: 118 VNKVDNSK---LLDDAVEFYN--LGLGDYFPIASISGSGTGELLDELL 160 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+++N +G + +IVT TTR + ++ +DT G+ K+ Sbjct: 178 AIIGRPNVGKSSIINTLIGKEQNIVTDIAGTTRDSLNIRYTQFGFDFSLVDTAGVRKKKN 237 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 + L + S I+H+D+ ++D+ R + + IA R+ + I+IL NK D Sbjct: 238 VHENLEFYSVMRSIRAIEHSDVCIHIIDAERGFEAQDQRIF-HIADRNKKGIVILVNKWD 296 Query: 142 CV 143 V Sbjct: 297 LV 298 >gi|307720282|ref|YP_003891422.1| ribosome-associated GTPase EngA [Sulfurimonas autotrophica DSM 16294] gi|306978375|gb|ADN08410.1| ribosome-associated GTPase EngA [Sulfurimonas autotrophica DSM 16294] Length = 492 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 11/176 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR--GIVSEKESQIVFLDTPGIFN 82 +A++G N GKS+L NR V + +I + TTR + R ++ +KE+++ LDT G+ Sbjct: 4 IAIIGRPNVGKSSLFNRLVKKRDAITSDLAGTTRDVKRKTALIIDKEAEL--LDTGGLDK 61 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + K+ +S ADI+ +VD + L E+ + L++NKID Sbjct: 62 GCELFDKIK-EMSLKAAYKADIILFMVDGKGLPEEEDKKLFYELQAMGKDIALVVNKIDN 120 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 K E+L E E + F +S ++L+++ LP + + D+ Sbjct: 121 DKMKEKLWEFYEFGTDAI-----FGISVAHNRNTVELLDWIYDKLPESDILKEEDE 171 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 10/140 (7%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 K+F +++ +A++G TN GKS+L+N +G + S+V+ TT + + K+ Q+ Sbjct: 223 KEFDENDINHIKIAIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDETIVYKDKQL 282 Query: 73 VFLDTPGIFNAKD--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-- 128 F+DT G+ K + + +++A++ +V+D+ DL ++IA Sbjct: 283 TFVDTAGLRRRGKIVGIEKFALMRTKEMLENANMALVVLDASEPF----LDLDEKIAGLV 338 Query: 129 RSSRL--ILILNKIDCVKPE 146 +RL I++LNK D K E Sbjct: 339 DQNRLACIIVLNKWDIAKRE 358 >gi|298369774|ref|ZP_06981091.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str. F0314] gi|298282331|gb|EFI23819.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str. F0314] Length = 454 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 3/152 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G ++IVT TTR VR ++ + +DT G+ Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I S + AD+ +++D + +L + + I I NK D Sbjct: 280 DVVEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNSLPAGLKK-IEIHNKADLTG 338 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +A + +SA G G D Sbjct: 339 EPVAVRSGGLAQ--TGADTVISLSAKTGAGLD 368 >gi|289522946|ref|ZP_06439800.1| ribosome-associated GTPase EngA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503489|gb|EFD24653.1| ribosome-associated GTPase EngA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 443 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + VA++G N GKSTL NR + +++IV TR + V +DT G Sbjct: 5 TNVVAIIGRANVGKSTLFNRLIQKRMAIVDDIPGVTRDRLYAQVEWAGKSFYLVDTGGFP 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKI 140 N + L+ + I+ A ++ VVD RE + + + EI +RS+R +++ +NKI Sbjct: 65 NEDEPLFDLVGKQIDRAIEEASVIIFVVDG-REGILPLDFRIAEILRRSNRRVIVAVNKI 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D E LL +A E VSA D+L+ + S + Sbjct: 124 DEPMHEPLLYEAFALG----FEDVIGVSAEHNRNIPDLLDKVVSYI 165 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 + ++ + + +D Q++ ++ +++VG N GKS++ N +G + +IV++ TTR + Sbjct: 158 LDKVVSYIDSEDSFQEDGKTIKISIVGRPNVGKSSIFNSLIGEERAIVSNLPGTTRDPID 217 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 ++ + + + +DT G+ KD + + I +D+V LV+D EL + Sbjct: 218 TEITFEGKKYLLIDTAGLRKKSRLKDDIEFYSLLRAERAIDRSDVVLLVLDVT-ELVTDQ 276 Query: 120 HDLLKEIA-KRSSRLILILNKIDCVKPE 146 + IA ++ +++ +NK D + PE Sbjct: 277 DKRIAGIALEKGKGIVVAINKWDLL-PE 303 >gi|241767064|ref|ZP_04764843.1| tRNA modification GTPase TrmE [Acidovorax delafieldii 2AN] gi|241362387|gb|EER58354.1| tRNA modification GTPase TrmE [Acidovorax delafieldii 2AN] Length = 473 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 7/127 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ ++ Sbjct: 234 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSV 293 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-------SHRELKVNIHDLLKEIAKRSSRLILIL 137 D ++ I +W I AD V + D +R I L + + +I + Sbjct: 294 DEVERIGIARAWDEIAAADAVLFLHDLARWDCADYRAADAAIEGALADKLPTTVPVIDVW 353 Query: 138 NKIDCVK 144 NK+D V Sbjct: 354 NKVDSVS 360 >gi|240047358|ref|YP_002960746.1| GTP-binding protein EngA [Mycoplasma conjunctivae HRC/581] gi|239984930|emb|CAT04923.1| GTP-binding protein EngA [Mycoplasma conjunctivae] Length = 435 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL+G N GKSTL N+ +G K SI TR + + +DT GI Sbjct: 4 TVALIGKPNVGKSTLFNKIIGKKKSITDSMPGVTRDRIYAKTTWLGKTFNIIDTGGIEIE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ L+ S I+ A ++ LV+D + + + ++ + K + +++++ NK++ Sbjct: 64 NRTFQDLIQMQSKVAIEEAQVIVLVLDGQNAIDSDDYYVVDLLRKSNKKVLVVANKLEGR 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 K + + + E F +SA G G D+L+ + + + + Sbjct: 124 K------SFDTSIYSLGFEHIFPISAIHGEGVGDLLDEIIANMSFS 163 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 7/127 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV--RGIVSEKESQIVFLDTPGIFN 82 +A++G NAGKSTL+N+ V ++ SI ++ TTR V + +V+ E +IV DT GI Sbjct: 173 LAIIGKPNAGKSTLLNKLVKSERSITSNIPGTTRDSVSSKWVVNNHELEIV--DTAGIIR 230 Query: 83 AK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +S + +++++ AD+ ++VD+ + L L +++ +IL++NK Sbjct: 231 KSKVVESVDFYALLRAFNSLDEADLSLVIVDASQPLSHFDSRLSGYAFEKNKPIILVINK 290 Query: 140 IDCVKPE 146 D ++ E Sbjct: 291 WDLIEKE 297 >gi|126662354|ref|ZP_01733353.1| tRNA modification GTPase [Flavobacteria bacterium BAL38] gi|126625733|gb|EAZ96422.1| tRNA modification GTPase [Flavobacteria bacterium BAL38] Length = 471 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 12/166 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + + F+DT GI K Sbjct: 231 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVINGMSFRFIDTAGIRETK 290 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK-EIAKRSSR-----LILILN 138 D + I+ ++ I+ A +V ++D ++ + +K E K ++ +++I N Sbjct: 291 DVVESIGIQKTFEKIEQAQVVLFILDGRWMMEAGSLEAVKIEFEKIKNKFPLKPVVVIAN 350 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 K D LL + N IE +SA + G D++ N L S Sbjct: 351 KAD------LLSADQKNNIQATIENILFLSAKQKEGIDELKNTLLS 390 >gi|289524240|ref|ZP_06441094.1| tRNA modification GTPase TrmE [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502896|gb|EFD24060.1| tRNA modification GTPase TrmE [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 462 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS++ N + +IVT TTR I+ G + + I+F+DT G+ Sbjct: 229 VAIVGRPNVGKSSIFNALLEETRAIVTPIPGTTRDIIEGSIVHRGIPIIFMDTAGLRATD 288 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + + ++ ++ AD+ ++D +L D+ E+ S I+ +NK D Sbjct: 289 DLVETIGVSMAQKALREADLRLWIIDGSEQLTKEEIDMAMELKNHSH--IVAINKAD 343 >gi|122702649|emb|CAL88514.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSVLNL 168 >gi|220929546|ref|YP_002506455.1| GTP-binding protein EngA [Clostridium cellulolyticum H10] gi|254783147|sp|B8I442|DER_CLOCE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219999874|gb|ACL76475.1| small GTP-binding protein [Clostridium cellulolyticum H10] Length = 441 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKST N G+++SIV TR + + + ++ +DT GI Sbjct: 5 VVAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYTEIEWRNTKFTLIDTGGIEPY 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D + M R + I+ AD++ +VD+ + ++ + K ++L +NK+D Sbjct: 65 SEDIIMQQMKRQAEIAIETADVIIFMVDAKDGMTATDKEVATMLRKSQKPVVLCVNKVDR 124 Query: 143 V--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V P + E + + + ++S+ G G D+L+ + P Sbjct: 125 VGDPPPDVYEFYNLG-----MGEMQIISSVHGLGIGDLLDEVFEHFP 166 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 5/148 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKS+L+N +G IV++ TTR + V + + F+DT GI Sbjct: 180 VAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDAIDTHVEKDGQKYTFIDTAGIRRRS 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K SW+ ++ AD+ +++D+ + + ++ I+++NK D Sbjct: 240 KISENIEKYSTIRSWTAVERADVCLIMIDAEDGVTEQDTKIAGYAHQQGKASIIVINKWD 299 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSA 169 + E+ E K+V + FM A Sbjct: 300 LI--EKQTGTLEEYRKVVHEKLGFMTYA 325 >gi|313623121|gb|EFR93388.1| ribosome-associated GTPase EngA [Listeria innocua FSL J1-023] Length = 436 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + I AD++ + + RE + + + +I RS++ ++L +NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNG-REGVTDADEQVAKILYRSNKPIVLAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +Q L F E + +S + G G D+L+ + + P Sbjct: 123 -NPE-MRDQIYDFYSLGFGEP-YPISGSHGLGLGDMLDAVRAHFP 164 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 +L+G N GKS+++N +G IV+ TTR + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K + + I+ +D+V +V+++ ++ + +I+++NK D Sbjct: 239 VYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDA 298 Query: 143 V 143 + Sbjct: 299 I 299 >gi|167834937|ref|ZP_02461820.1| tRNA modification GTPase TrmE [Burkholderia thailandensis MSMB43] Length = 467 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 7/116 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E V ++R G V L G N GKS+L+N GA+++IVT T Sbjct: 201 GKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 260 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH 112 TR V + + + +DT G+ +D K+ I +W I+ AD+V ++D+ Sbjct: 261 TRDKVAQTIQVEGIPLHIVDTAGLRETEDEVEKIGIARTWGEIERADVVLHLLDAR 316 >gi|161349970|ref|YP_045311.2| GTP-binding protein EngA [Acinetobacter sp. ADP1] Length = 469 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL N+ ++ ++V TR G + + +DT GI Sbjct: 4 VIALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGEG 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M S + I ADI+ VVD+ L + + +EI ++ L+ NK+D V Sbjct: 64 EAGIDAYMAEQSKTAIHEADIIIFVVDARAGLLASDEQIAREIRSLGKKVYLVANKVDGV 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + + KL F E V+A+ G G +L + +P Sbjct: 124 HAEAAVVE---FYKLGFGE-PLHVAASHGRGVAQMLEDVLVDVP 163 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +A++G N GKSTLVNR +G + + + TTR + Q +DT G+ Sbjct: 179 LAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGV 234 >gi|123967979|ref|YP_001008837.1| GTP-binding protein EngA [Prochlorococcus marinus str. AS9601] gi|166225839|sp|A2BPL9|DER_PROMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123198089|gb|ABM69730.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. AS9601] Length = 457 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +QD+ ++++G N GKS+L+N G K +IV+ TT + ++ + ++ + Sbjct: 170 IQDDEEKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNNWKII 229 Query: 76 DTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI N K I ++ +I +D+ LV+D+ + L I ++ Sbjct: 230 DTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQDQKLAGRIEEQGRA 289 Query: 133 LILILNKIDCV-KPERLLEQA--EIANKLVFI--EKTFMVSATKGHGCDDVLNY 181 I+++NK D + K + Q E+ +KL F+ K +SA G D++ + Sbjct: 290 CIIVVNKWDLIEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQRVDNIFEH 343 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR + +IV K TR S + +DT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 84 KDSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S IR + ++ A + LVVD ++ + + K + S + I+ +NK C Sbjct: 65 DESEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + A KL E VSA G G D+L+ + LP Sbjct: 123 ESTTLGISLASEFWKLGLGEPN-PVSAIHGSGTGDLLDLVIGELP 166 >gi|122701709|emb|CAL88244.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122700669|emb|CAL87923.1| GTPase [Helicobacter pylori] gi|122700699|emb|CAL87938.1| GTPase [Helicobacter pylori] gi|122701361|emb|CAL88070.1| GTPase [Helicobacter pylori] gi|122701505|emb|CAL88142.1| GTPase [Helicobacter pylori] gi|122701511|emb|CAL88145.1| GTPase [Helicobacter pylori] gi|122701515|emb|CAL88147.1| GTPase [Helicobacter pylori] gi|122701559|emb|CAL88169.1| GTPase [Helicobacter pylori] gi|122702591|emb|CAL88485.1| GTPase [Helicobacter pylori] gi|122702615|emb|CAL88497.1| GTPase [Helicobacter pylori] gi|122702665|emb|CAL88522.1| GTPase [Helicobacter pylori] gi|122702867|emb|CAL88623.1| GTPase [Helicobacter pylori] gi|122702875|emb|CAL88627.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|153815417|ref|ZP_01968085.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756] gi|145847276|gb|EDK24194.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756] Length = 465 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N G + +IVT TTR ++ + + +DT GI +D Sbjct: 232 IVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTEDL 291 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + AD++ VVD+ R L N ++ I+ + S I++LNK D Sbjct: 292 IEKIGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKS--IVLLNKSD 344 >gi|122701543|emb|CAL88161.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLNL 168 >gi|122700907|emb|CAL88042.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|4467683|emb|CAB37793.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR ++ I + TTR + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERMPITSDFAGTTRDFNKRKIALNAHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L E K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLISYVVDGKSIPSDEDLK-----LFSEFFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + I K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|317500879|ref|ZP_07959091.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA] gi|316897759|gb|EFV19818.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA] Length = 465 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N G + +IVT TTR ++ + + +DT GI +D Sbjct: 232 IVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTEDL 291 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + AD++ VVD+ R L N ++ I+ + S I++LNK D Sbjct: 292 IEKIGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKS--IVLLNKSD 344 >gi|124516125|gb|EAY57633.1| putative GTP binding protein [Leptospirillum rubarum] Length = 518 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 4/126 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TN GKSTL+N+ G+ V T R + +E +I+ DT G Sbjct: 341 IVSLVGYTNVGKSTLLNQLTGSSVLTENRMFATLDPTTRRLRFPREREIILTDTVGFIRN 400 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIH---DLLKEIAKRSSRLILILNK 139 + ++ +K A ++ V D+ H +++ I +LLKE+ ILILNK Sbjct: 401 LPGDLRRAFLATFDELKDAHLLLHVADAFHPKMEEQIQRVEELLKEMEIDRIPRILILNK 460 Query: 140 IDCVKP 145 DC+ P Sbjct: 461 TDCLSP 466 >gi|122700723|emb|CAL87950.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLDL 168 >gi|295111440|emb|CBL28190.1| iron-only hydrogenase maturation protein HydF [Synergistetes bacterium SGP1] Length = 407 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIFNA 83 VA G NAGKS+LVN G +SIV+ TT VR + ++ +DTPG+ + Sbjct: 14 VAFFGVRNAGKSSLVNAVTGQDLSIVSDVGGTTTDPVRKAMELLPLGPVLIIDTPGL-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + L + + + D L D+ R L + H LL + +R+ ++ K D + Sbjct: 73 EGALGALRVERTLRILAETDAAVLAADARRPLTEHDHRLLALLKERAIPFLIARTKADLL 132 Query: 144 KPE 146 +PE Sbjct: 133 RPE 135 >gi|292806514|gb|ADE42387.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDS-YHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ + K + L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALWSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|269115231|ref|YP_003302994.1| tRNA modification GTPase [Mycoplasma hominis] gi|268322856|emb|CAX37591.1| tRNA modification GTPase [Mycoplasma hominis ATCC 23114] Length = 448 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 13/152 (8%) Query: 5 EITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT 57 +++ FN D + + S + C VA+VG N GKS+L+N +G++ +IVT+ TT Sbjct: 196 QLSKFNRKLDSIINKSENACDIYKGINVAIVGRPNTGKSSLLNSLIGSQKAIVTNIPGTT 255 Query: 58 RSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-LK 116 R +V G +DT GI KD + I S + IK A I V+ H +K Sbjct: 256 RDVVEGEFQINGFLFNLIDTAGIRQTKDLVESIGIERSKNAIKEAKI---VIHMHEPFIK 312 Query: 117 VNIHD-LLKEIAKRSSRLILILNKIDCVKPER 147 N D ++KE++K I ++NK D + ++ Sbjct: 313 ENEEDQIIKELSK-GKVYIPVMNKQDLLNKDQ 343 >gi|237708959|ref|ZP_04539440.1| tRNA modification GTPase TrmE [Bacteroides sp. 9_1_42FAA] gi|265756268|ref|ZP_06090597.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_33FAA] gi|229457021|gb|EEO62742.1| tRNA modification GTPase TrmE [Bacteroides sp. 9_1_42FAA] gi|263233859|gb|EEZ19468.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_33FAA] Length = 498 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ ++ + F+DT GI Sbjct: 257 VAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQGVTFRFIDTAGIRQTN 316 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDC 142 D+ L I ++ + A ++ ++DS + + +L EI ++I++ NK D Sbjct: 317 DTIENLGIERTFQKMDQAYVILWMIDS-TDAQRRFEELKAEILPHCEGKKMIILFNKSDL 375 Query: 143 V 143 + Sbjct: 376 L 376 >gi|99905853|gb|ABF68621.1| YphC [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ++ A I K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNLNP 170 >gi|42519903|ref|NP_965833.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii NCC 533] gi|81832151|sp|Q74H94|MNME_LACJO RecName: Full=tRNA modification GTPase mnmE gi|41584193|gb|AAS09799.1| probable tRNA modification GTPase TrmE [Lactobacillus johnsonii NCC 533] Length = 461 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I AD+V L++D+ ++L +LL A + + I+ILNK Sbjct: 282 IHHTEDKVEKIGVERSKKAIAEADLVLLLLDASQDLTDEDKNLLNLTANK--KRIIILNK 339 Query: 140 ID 141 D Sbjct: 340 QD 341 >gi|15616993|ref|NP_240206.1| GTPase ObgE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681745|ref|YP_002468131.1| hypothetical 43.3 kDa GTP-binding protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682300|ref|YP_002468684.1| hypothetical 43.3 kDa GTP-binding protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471446|ref|ZP_05635445.1| hypothetical 43.3 kDa GTP-binding protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|13878843|sp|P57469|OBG_BUCAI RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|261266693|sp|B8D9H2|OBG_BUCA5 RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|261266694|sp|B8D7S4|OBG_BUCAT RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|25295779|pir||D84975 hypothetical protein yhbZ [imported] - Buchnera sp. (strain APS) gi|10039058|dbj|BAB13092.1| hypothetical 43.3 kD GTP-binding protein in dacB-rpmA intergenic region (F390) [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622033|gb|ACL30189.1| hypothetical 43.3 kDa GTP-binding protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624588|gb|ACL30743.1| hypothetical 43.3 kDa GTP-binding protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086126|gb|ADP66208.1| GTPase ObgE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086699|gb|ADP66780.1| GTPase ObgE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087284|gb|ADP67364.1| GTPase ObgE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 334 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 21/175 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +G N GKSTLV GAK I + T ++ + +K + + D PGI Sbjct: 162 VGTLGMPNVGKSTLVTNISGAKTKISDYPFTTLHPVLGSVNIQKNKKFIIADIPGIIKGA 221 Query: 85 DSYHKLMIRLSWSTIKHAD-------IVCLVVDSHRELKVNIHDLLKEIAKRSSRLI--- 134 L IR +KH + I+ LV ++ NI +L E+ K S +L Sbjct: 222 SYGAGLGIRF----LKHLERCKLLLHIIDLVPQNNCHPSDNIKTVLNELKKYSLKLYNKP 277 Query: 135 --LILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHG----CDDVLNYL 182 I NKID + E L + EI + EK +++S+ K G C D+ YL Sbjct: 278 RWFIFNKIDLLSVEELNQIIKEIIFQFKIHEKYYLISSMKKIGIKKLCSDITKYL 332 >gi|114330965|ref|YP_747187.1| small GTP-binding protein [Nitrosomonas eutropha C91] gi|114307979|gb|ABI59222.1| GTP-binding protein HflX [Nitrosomonas eutropha C91] Length = 377 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 8/127 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V++VG TNAGKSTL NR V + T + R + + IV DT G Sbjct: 200 SVSIVGYTNAGKSTLFNRLVRSDAYAADKLFATLDTTTRRLFLPERGLIVISDTVGFI-- 257 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD---SHRELKVN-IHDLLKEIAKRSSRLILIL 137 +D H L+ R + AD++ VVD S+R+++++ ++ LL+EI + ILIL Sbjct: 258 RDLPHTLVAAFRATLEETIQADLLLHVVDVSSSNRDVQISEVNKLLQEIGADTIPQILIL 317 Query: 138 NKIDCVK 144 NKID ++ Sbjct: 318 NKIDLIE 324 >gi|330830064|ref|YP_004393016.1| GTP-binding protein engA [Aeromonas veronii B565] gi|328805200|gb|AEB50399.1| GTP-binding protein engA [Aeromonas veronii B565] Length = 498 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + + + K ++ L+ NK D + Sbjct: 64 EEGIELKMAEQSLLAIEEADVVLFMVDARAGLTAADQAIAEHLRKAHKKVFLVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + + + + + + ++A G G +L L LAP Sbjct: 124 DGDSAVSEF----YGLALGEVYQIAAAHGRGVLSLLE-----LALAP 161 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG N GKSTL NR +G IV TTR V + E + V +DT G+ Sbjct: 216 AIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYIPMERDEQKYVVIDTAGVRRRGK 275 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ K + + I+ A++ LV+D+ + +L + ++L++NK D Sbjct: 276 VHETVEKFSVIKTLKAIEDANVCLLVIDAQETITDQDLSILGYVLHAGRSVVLVVNKWDG 335 Query: 143 VKPERLLE--QAEIANKLVFIE--KTFMVSATKGHGC 175 + +++ E + E+ +L FI+ + +SA G G Sbjct: 336 LD-QKVKEDVKNELDRRLGFIDFARVHFISALHGSGV 371 >gi|311063949|ref|YP_003970674.1| GTP-binding protein HflX [Bifidobacterium bifidum PRL2010] gi|313139783|ref|ZP_07801976.1| GTPase [Bifidobacterium bifidum NCIMB 41171] gi|310866268|gb|ADP35637.1| HflX GTP-binding protein [Bifidobacterium bifidum PRL2010] gi|313132293|gb|EFR49910.1| GTPase [Bifidobacterium bifidum NCIMB 41171] Length = 500 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 16/177 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG TNAGKS+L NR G+ + T + VR ++ ++DT G Sbjct: 264 TIAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRN 323 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEI--AKRSSRLILIL 137 + + + + ADI+ VVD SH + I +D+L +I A+ R +++ Sbjct: 324 LPTQLIEAFKSTLEEVAEADIILHVVDGSHPDPFSQIDAVNDVLADIEGAEEIPR-VVVF 382 Query: 138 NKIDCVKPERLLEQAEIANKLVFIE-KTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 NKID + A +L +E + +VSA G G DD+L + S LP+ P V+ Sbjct: 383 NKIDRI-------DAATRERLAALEPEASLVSAATGEGLDDLLRRIESMLPV-PGVH 431 >gi|308185215|ref|YP_003929348.1| tRNA modification GTPase TrmE [Helicobacter pylori SJM180] gi|308061135|gb|ADO03031.1| tRNA modification GTPase TrmE [Helicobacter pylori SJM180] Length = 450 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDALNRAKKPCIVVLNKND 332 >gi|238750293|ref|ZP_04611795.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380] gi|238711526|gb|EEQ03742.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380] Length = 497 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 262 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN 321 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 322 DEVERIGIERAWHEIEQADRVLFMVDG 348 >gi|217032525|ref|ZP_03438016.1| hypothetical protein HPB128_180g24 [Helicobacter pylori B128] gi|298736539|ref|YP_003729065.1| GTP-binding protein [Helicobacter pylori B8] gi|216945803|gb|EEC24426.1| hypothetical protein HPB128_180g24 [Helicobacter pylori B128] gi|298355729|emb|CBI66601.1| GTP-binding protein [Helicobacter pylori B8] Length = 461 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A I K+F +S + G +++ + S L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGIPKSFNISVSHNRGISALIDAVLSALDL 169 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|210622342|ref|ZP_03293111.1| hypothetical protein CLOHIR_01059 [Clostridium hiranonis DSM 13275] gi|210154330|gb|EEA85336.1| hypothetical protein CLOHIR_01059 [Clostridium hiranonis DSM 13275] Length = 441 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ N+F G ++SIV TR + V +DT GI Sbjct: 8 IVAVVGRPNVGKSTIFNKFAGRRISIVEDTPGVTRDRIFTEVEWLNKYFTLIDTGGIEPK 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D +R + + A ++ +VVD + + ++ + + + + +IL++NKID Sbjct: 68 SDDIIVSQMRNQAMLAMDMAHVILMVVDGKQGITAADREIAETLRRTNKPVILVVNKIDS 127 Query: 143 VKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLP 187 + ++ N F E + F +S G D+L+ + + P Sbjct: 128 M--------SQYDNVYDFYELGLGEPFAISGANSMGLGDLLDEIVANFP 168 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKS+++N +G IV+ TTR V + + +DT G+ Sbjct: 182 VAITGKPNAGKSSILNNILGEDRVIVSPIAGTTRDAVDTYFEKNGQNYLLIDTAGLRRKS 241 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH 112 Y K + + S + AD+V +V+D+ Sbjct: 242 KVYESVEKYSVIRAMSAVDRADVVLIVIDAQ 272 >gi|166712458|ref|ZP_02243665.1| GTP-binding protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 439 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA+ + T VR I S I DT G + Sbjct: 201 IALVGYTNAGKSTLFNALTGAEAYVADQLFATLDPTVRRIALPGGSAI-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ +VD+ L+ + + ++L+ + +L+ N Sbjct: 258 DLPHELVAAFRSTLSEARDADLLLHIVDAADPLREERILQVDEVLQAVGAGDLPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID + + A+ + VSA G G +++ + L L L Sbjct: 318 KIDKIDGAEVRHDAQDGIPDPARRERVWVSARDGRGLEELQHALGQRLDL 367 >gi|329571714|gb|EGG53395.1| ribosome biogenesis GTPase Der [Enterococcus faecalis TX1467] Length = 436 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT G Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGFDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ V S RE + +L+ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIIFVA-SGREGITDADELVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E + + F VS + G G DVL+ P Sbjct: 123 -NPEMRNDIYEFY--ALGLGDPFPVSGSHGLGIGDVLDEAVKHFP 164 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 +L+G N GKS+L+N +G IV+ TTR + +E Q + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 TVK 300 >gi|329946748|ref|ZP_08294160.1| ribosome biogenesis GTPase Der [Actinomyces sp. oral taxon 170 str. F0386] gi|328526559|gb|EGF53572.1| ribosome biogenesis GTPase Der [Actinomyces sp. oral taxon 170 str. F0386] Length = 719 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 4/178 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 284 VLAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVD 343 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + ++ AD V LVVD+ + +++ + + ++L NK+D Sbjct: 344 VAGLDAAVATQAEVAVEMADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKVDS- 402 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 P + + A + N + + + F VSA G G +VL+ + LP V +A DL Sbjct: 403 -PAQEGDAATLWN--LGLGEPFPVSALHGRGSGEVLDAVMEVLPEVSAVATAAPEGDL 457 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N G + +V TTR V I+ Q VF+DT GI Sbjct: 460 VALVGRPNVGKSSLLNSIAGRERVVVNETAGTTRDPVDEIIELDGRQWVFVDTAGIRRRV 519 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + I A++V +++D+ + +++++ L+L+ N Sbjct: 520 KQSRGADYYAVLRTQ---GAIDKAEVVVVLLDASEPISEQDVRVVQQVVDAGRALVLVNN 576 Query: 139 KIDCVKPER 147 K D V ER Sbjct: 577 KWDLVDEER 585 >gi|317453509|emb|CBL87864.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSALNL 168 >gi|295132650|ref|YP_003583326.1| GTP-binding protein EngA [Zunongwangia profunda SM-A87] gi|294980665|gb|ADF51130.1| GTP-binding protein EngA [Zunongwangia profunda SM-A87] Length = 434 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 9/184 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 SG VA+VG N GKST NR + + +IV TR G +DT G + Sbjct: 2 SGIVAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRHYGKSDWNGRNFSLIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + I AD + +VD + D+ + K + + L +NK+ Sbjct: 62 IGSDDVFEAEIDKQVELAIGEADAIIFMVDVESGITPMDEDVAILLRKVNKPVFLAVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D K RL E + + + F +++T G G D+L+ + +LP + + S+ Sbjct: 122 DNNK--RLENAVEFY--ALGLGEYFPIASTNGSGTGDLLDAVIESLPEETY----KEESE 173 Query: 201 LPMF 204 LP F Sbjct: 174 LPRF 177 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRKSK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I++AD+ LV+D+ R + ++ +A+R+ + I+IL NK D Sbjct: 238 VKEDLEFYSVMRSVRAIENADVCLLVLDATRGFDGQVQNIF-WLAQRNRKGIVILVNKWD 296 Query: 142 CVKPE 146 V+ E Sbjct: 297 LVEKE 301 >gi|293391945|ref|ZP_06636279.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952479|gb|EFE02598.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 510 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 +A+VG N GKSTL NR +G +V TTR + I E+++Q +DT G+ Sbjct: 224 IAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIY-IPMERDNQNYTLIDTAGVRKR 282 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + + I+ A++V LV+D+ + LL I L++++NK Sbjct: 283 GKVHLAVEKFSVIKTLQAIQDANVVLLVIDARENISDQDLSLLGFILNAGRSLVIVVNKW 342 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + E + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 343 DGLDTEVKNRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYECAT 395 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGHDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I+ ADIV +VD+ L + I + L++ +++ +++ NK+ Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQ--RQNKTTVVVANKV 122 Query: 141 DCVKPE 146 D + + Sbjct: 123 DGIDAD 128 >gi|261867584|ref|YP_003255506.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412916|gb|ACX82287.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 510 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 +A+VG N GKSTL NR +G +V TTR + I E+++Q +DT G+ Sbjct: 224 IAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIY-IPMERDNQDYTLIDTAGVRKR 282 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + + I+ A++V LV+D+ + LL I L++++NK Sbjct: 283 GKVHLAVEKFSVIKTLQAIQDANVVLLVIDARENISDQDLSLLGFILNAGRSLVIVVNKW 342 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + E + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 343 DGLDTEVKNRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYECAT 395 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGHDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I+ ADIV +VD+ L + I + L++ +++ +++ NK+ Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQRQNKTT--VVVANKV 122 Query: 141 DCVKPE 146 D + + Sbjct: 123 DGIDAD 128 >gi|225028014|ref|ZP_03717206.1| hypothetical protein EUBHAL_02283 [Eubacterium hallii DSM 3353] gi|224954728|gb|EEG35937.1| hypothetical protein EUBHAL_02283 [Eubacterium hallii DSM 3353] Length = 445 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N G+++SIV TR + VS + Q +DT GI Sbjct: 9 VVAVVGRPNVGKSTLFNALAGSRISIVEDTPGVTRDRIYAEVSWLDYQFTLIDTGGIEPE 68 Query: 84 KDSYHKLMIRLSWST-IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 D +R T I AD++ +VD + L V+ + ++ +RS R ++L++NK+D Sbjct: 69 SDDIIISRMREQAETAIMTADVILFLVDVRQGL-VDADFKVADMLRRSHRPVVLVVNKVD 127 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G NAGKS+++N+ +G + IV+ TTR + V + VF+DT G+ Sbjct: 185 IAVIGKPNAGKSSIINKLLGEERVIVSPVAGTTRDAIDTTVKRNGQEYVFIDTAGLRRKS 244 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ D+ L++D+ + + +R +I+ +NK D Sbjct: 245 KIKEELERYSIIRTVTAVERCDVAVLIIDATEGITEQDAKIAGIAHERGKGMIIAVNKWD 304 Query: 142 CVK 144 V+ Sbjct: 305 LVE 307 >gi|212692016|ref|ZP_03300144.1| hypothetical protein BACDOR_01511 [Bacteroides dorei DSM 17855] gi|212665408|gb|EEB25980.1| hypothetical protein BACDOR_01511 [Bacteroides dorei DSM 17855] Length = 500 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ ++ + F+DT GI Sbjct: 259 VAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQGVTFRFIDTAGIRQTN 318 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDC 142 D+ L I ++ + A ++ ++DS + + +L EI ++I++ NK D Sbjct: 319 DTIENLGIERTFQKMDQAYVILWMIDS-TDAQRRFEELKAEILPHCEGKKMIILFNKSDL 377 Query: 143 V 143 + Sbjct: 378 L 378 >gi|220917392|ref|YP_002492696.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955246|gb|ACL65630.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 465 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 13/166 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR G +V+IV TR V + + +DT G Sbjct: 7 VVALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGF--E 64 Query: 84 KDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILIL 137 +S +LM ++ + + A V LVVD L N+ DLL+ K L + + Sbjct: 65 PESRDRLMSQVREQAQLAVDEASAVVLVVDGRDGLTALDRNVADLLRRAGK---PLFVAV 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 NK+D + E + AE L F E VSA G G +++ + Sbjct: 122 NKVDTARTEEDVPLAEFYG-LGFGE-VHAVSAEHGRGVSGLVDAIV 165 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKST VN +G + +V+ TTR + +V+ K + V DT GI + Sbjct: 198 LAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGRRFVVTDTAGIRRKR 257 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ ++R + + A++V ++D+ LL +A++ L++++NK Sbjct: 258 SIAQKVESFSVVR-AMKAMDQAEVVACLLDATEAGVEQDARLLGLVAEKGKALVIVVNKW 316 Query: 141 DCVKPERLLE---QAEIANKLVFI--EKTFMVSATKGHGCDDVL 179 D + E + + E+ +L F+ VSA + G VL Sbjct: 317 DIAEREGATQDWYRKELTKRLPFVGFAPMLFVSAKERRGVHRVL 360 >gi|78778772|ref|YP_396884.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9312] gi|123554591|sp|Q31CE7|DER_PROM9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78712271|gb|ABB49448.1| Small GTP-binding protein domain [Prochlorococcus marinus str. MIT 9312] Length = 457 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +Q+ ++++G N GKS+L+N G K +IV+ TT + ++ + ++Q + Sbjct: 170 IQEEEEKIMMSIIGRPNVGKSSLLNSISGEKRAIVSDISGTTTDSIDTLIKKGDTQWKIV 229 Query: 76 DTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI N K I ++ +I +D+ LV+D+ + L I ++ Sbjct: 230 DTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQDQKLAGRIEEQGRA 289 Query: 133 LILILNKIDCV-KPERLLEQA--EIANKLVFI--EKTFMVSATKGHGCDDVLNY 181 I+++NK D V K + Q E+ +KL F+ K +SA G D++ + Sbjct: 290 CIIVINKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQRVDNIFEH 343 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR + +IV K TR S + +DT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 84 KDSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS IR + ++ A + LVVD ++ + + K + S + I+ +NK C Sbjct: 65 DDSEFLPEIRAQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIIAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + A KL E + VSA G G D+L+ + LP Sbjct: 123 ESTTLGISLASEFWKLGLGE-PYPVSAIHGSGTGDLLDLVIGELP 166 >gi|297621993|ref|YP_003710130.1| tRNA modification GTPase TrmE [Waddlia chondrophila WSU 86-1044] gi|297377294|gb|ADI39124.1| tRNA modification GTPase TrmE [Waddlia chondrophila WSU 86-1044] Length = 452 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G N GKS+L+N + + +IVT TTR IV + +DT GI ++ Sbjct: 224 LIGRPNVGKSSLMNALLDKERAIVTDTPGTTRDIVEDSLRINGLNFRLIDTAGIREGAET 283 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + IR S ++ AD+V LV+D+ R + L+ + K + I + NKID Sbjct: 284 IEQEGIRRSKEALEKADLVLLVLDAKRGVTAEDEQLIDLVPK--GKTIAVWNKID 336 >gi|118594209|ref|ZP_01551556.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181] gi|118439987|gb|EAV46614.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181] Length = 450 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 4/140 (2%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ +I H +++ + V L+G N GKS+L+N+ VG + +IVT TTR + Sbjct: 199 EVDQILLVARHGQLLKEGAN---VVLIGQPNVGKSSLLNQLVGEEKAIVTDVPGTTRDPI 255 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 +S + DT G+ D L I +W +IK + I ++VD+ + D Sbjct: 256 ASNISIHGIPLNVFDTAGLRTTDDQVELLGISKTWESIKGSHIAMVLVDATKGAGNYEKD 315 Query: 122 LLKEIAKRSSRLILILNKID 141 ++ + K + ++ I NKID Sbjct: 316 IISRLPK-NIEILWIYNKID 334 >gi|187478830|ref|YP_786854.1| GTP-binding protein EngA [Bordetella avium 197N] gi|115423416|emb|CAJ49950.1| GTP-binding protein [Bordetella avium 197N] Length = 451 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 19/183 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 VALVG N GKSTL NR ++ ++V TR G + + +DT G Sbjct: 6 VVALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGDIPFIVIDTGGFEPV 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILNKID 141 AKD M R + I AD+V +VD+ + + H++ + + K R++L +NK + Sbjct: 66 AKDGILAEMARQTRQAIAEADVVVFLVDARAGINAHDHEIARLLRKSGQQRVLLAVNKAE 125 Query: 142 CVKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + F E + +SA G G D++ LA V AD+ Sbjct: 126 GMNEGKATSD--------FFELGLGEPHPISAAHGDGVVDLIESA-----LADLVPPADE 172 Query: 198 ISD 200 I+D Sbjct: 173 IAD 175 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N +G + I TTR + Q +DT G+ Sbjct: 187 LAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIEFERDGRQYTLIDTAGLRKRG 246 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V L++D+ E+ + + + +++ +NK D Sbjct: 247 KVFEAVEKFSVIKTLQAIEASNVVLLMLDAQSEISEQDAHIAGFVLETGRAVVVAINKWD 306 Query: 142 CV---KPERLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVL 179 + + ER+ + E KL F+ M +SA KG G +L Sbjct: 307 GLDDDQRERI--EREFQRKLRFLTFARMHTISALKGQGIRPLL 347 >gi|21242485|ref|NP_642067.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107933|gb|AAM36603.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306] Length = 439 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA+ + T VR I S I DT G + Sbjct: 201 IALVGYTNAGKSTLFNVLTGAEAYVADQLFATLDPTVRRIALPGGSAI-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ VVD+ L+ + + ++L+ + +L+ N Sbjct: 258 DLPHELVAAFRSTLSEARDADLLLHVVDAADPLREERILQVDEVLQAVGAGDLPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID + + A+ + VSA G G +++ + L L L Sbjct: 318 KIDKIAGAEVRRDAQDGIPDPARRERVWVSARDGRGLEELQHALGQRLDL 367 >gi|317060108|ref|ZP_07924593.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D12] gi|313685784|gb|EFS22619.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D12] Length = 390 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 71/130 (54%), Gaps = 1/130 (0%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + + +IVT TTR ++ +++ K ++ +DT GI + D Sbjct: 158 IIGKPNVGKSSLLNSILREERAIVTQVAGTTRDVIEEVINIKGIPLILVDTAGIRDTTDF 217 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + + S ++ AD+V V+D+ +EL ++ + + + ++I ILNK D K Sbjct: 218 VENIGVMKSKEFLQKADLVLFVLDASQELSKEDREIYISL-QENQKVIGILNKTDLEKKI 276 Query: 147 RLLEQAEIAN 156 ++ ++I N Sbjct: 277 QVSSLSKIKN 286 >gi|33151312|ref|NP_872665.1| tRNA modification GTPase TrmE [Haemophilus ducreyi 35000HP] gi|46577376|sp|Q7U344|MNME_HAEDU RecName: Full=tRNA modification GTPase mnmE gi|33147532|gb|AAP95054.1| tRNA modification GTPase TrmE [Haemophilus ducreyi 35000HP] Length = 452 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 21 RSGCVALV-GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++ G NAGKS+L+N G + +IVT+ TTR ++ + + +DT G Sbjct: 212 REGMKAVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLHEHIHLDGMPLHIIDTAG 271 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + A D K+ I+ +W+ I AD V L++DS Sbjct: 272 LREASDEVEKIGIQRAWNEIVAADHVLLMLDS 303 >gi|146293744|ref|YP_001184168.1| GTP-binding protein EngA [Shewanella putrefaciens CN-32] gi|166225857|sp|A4Y8T6|DER_SHEPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145565434|gb|ABP76369.1| small GTP-binding protein [Shewanella putrefaciens CN-32] gi|319427118|gb|ADV55192.1| ribosome-associated GTPase EngA [Shewanella putrefaciens 200] Length = 488 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NK+D + Sbjct: 64 EEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + AE + + + + + ++A++G G +++ Y + Sbjct: 124 DADSAC--AEFWS--LGLGEVYQMAASQGRGVTNMIEYALT 160 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + + V +DT G+ + Sbjct: 201 LAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMEREGREYVIIDTAGV-RRR 259 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+++ + S ++ A++V L++D+ + LL L++ +NK Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLIIDAREGVAEQDLGLLGFALNAGRALVIAVNKW 319 Query: 141 DCVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + +R+ ++E+ +L FI+ + +SA G G Sbjct: 320 DGIDQGIKDRV--KSELDRRLGFIDFARIHFISALHGTGV 357 >gi|299530499|ref|ZP_07043919.1| ferrous iron transport protein B [Comamonas testosteroni S44] gi|298721475|gb|EFI62412.1| ferrous iron transport protein B [Comamonas testosteroni S44] Length = 387 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 16/171 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL N V A+ T + R + ++E E + DT G Sbjct: 191 ISLVGYTNAGKSTLFNAMVKARAYAADQLFATLDTTTRQMYLAEAEESVSLSDTVGFI-- 248 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILIL 137 +D H L+ + + AD++ VVD+ E + +L EI IL+ Sbjct: 249 RDLPHGLVDAFQATLQEAIDADLLLHVVDASNPGFPEQIQQVQKVLGEIGADDVPQILVF 308 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKT----FMVSATKGHGCDDVLNYLCS 184 NK+D ++PER Q + + ++ T VSA G G + L Sbjct: 309 NKLDAIEPER---QPALLQDMYELDGTPVPRVFVSARSGQGLAQLRQMLAD 356 >gi|292806478|gb|ADE42369.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806508|gb|ADE42384.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILSALNL 168 >gi|258611783|ref|ZP_05711645.1| GTP-binding protein engA [Listeria monocytogenes FSL R2-503] gi|258606169|gb|EEW18777.1| GTP-binding protein engA [Listeria monocytogenes FSL R2-503] Length = 345 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + I AD++ + + RE + + + +I RS++ ++L +NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNG-REGVTDADEQVAKILYRSNKPIVLAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +Q L F E + +S + G G D+L+ + + P Sbjct: 123 -NPE-MRDQIYDFYSLGFGEP-YPISGSHGLGLGDMLDAVRAHFP 164 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 +L+G N GKS+++N +G IV+ TTR + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K + + I+ +D+V +V+++ ++ + +I+++NK D Sbjct: 239 VYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDA 298 Query: 143 VKPE 146 + + Sbjct: 299 INKD 302 >gi|167036429|ref|YP_001671660.1| tRNA modification GTPase TrmE [Pseudomonas putida GB-1] gi|189036205|sp|B0KRC0|MNME_PSEPG RecName: Full=tRNA modification GTPase mnmE gi|166862917|gb|ABZ01325.1| tRNA modification GTPase TrmE [Pseudomonas putida GB-1] Length = 456 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N+ G + +IVT TTR I+R + + +DT G+ + Sbjct: 219 VVIAGRPNAGKSSLLNQLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ + + I AD V LVVDS + L E + +++ LI NK D Sbjct: 279 DHVEKIGVERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDPAKVTLIRNKAD 338 Query: 142 CVKPERLLEQ 151 LEQ Sbjct: 339 LSGEHVGLEQ 348 >gi|122702573|emb|CAL88476.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|50914157|ref|YP_060129.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10394] gi|73919891|sp|Q5XCB7|MNME_STRP6 RecName: Full=tRNA modification GTPase mnmE gi|50903231|gb|AAT86946.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS10394] Length = 458 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT TTR ++ V+ K + +DT G Sbjct: 222 REGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S ++ +D+V LV+++ +L LL +++ S+R+IL LNK Sbjct: 282 IRETDDLVEQIGVERSKKALQESDLVLLVLNASEKLTDQDRALLN-LSQDSNRIIL-LNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|83953588|ref|ZP_00962309.1| GTP-binding protein HflX [Sulfitobacter sp. NAS-14.1] gi|83841533|gb|EAP80702.1| GTP-binding protein HflX [Sulfitobacter sp. NAS-14.1] Length = 412 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR GA V T +R +V +I+ DT G + Sbjct: 194 VALVGYTNAGKSTLFNRMTGADVMAKDMLFATLDPTMRSLVLPDGPEIILSDTVGFISDL 253 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKV---NIHDLLKEIA-KRSSRLILILNK 139 + R + + ADI+C V D SH E + N+ D+L + + +R + NK Sbjct: 254 PTELVAAFRATLEEVLAADIICHVRDISHAETESQARNVRDILTSLGVPKDTRSFEVWNK 313 Query: 140 ID 141 +D Sbjct: 314 LD 315 >gi|323486669|ref|ZP_08091990.1| hypothetical protein HMPREF9474_03741 [Clostridium symbiosum WAL-14163] gi|323400050|gb|EGA92427.1| hypothetical protein HMPREF9474_03741 [Clostridium symbiosum WAL-14163] Length = 418 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 13/175 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D + + A+VG TNAGKSTL+N+ GA + T RG+ +I+ D Sbjct: 196 RDRNYTLSAAIVGYTNAGKSTLLNKLTGAGILAEDKLFATLDPTTRGMELPSGQKILLTD 255 Query: 77 TPGIFNAKDSYHKL-MIRLSWSTIKHADIVCLVVDS-HRELKVNIH---DLLKEIAKRSS 131 T G F K +H + R + +++DI+ VVD ++ IH + L+++ + Sbjct: 256 TVG-FIRKLPHHLIEAFRSTLEEARYSDIILHVVDCVSPQMDSQIHIVYETLRKLEIKDK 314 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ + NKIDC++ E +L+ + ++ +SA G G +++ L + L Sbjct: 315 TIVTVFNKIDCLEQEVILKDLQSDYQV-------KISARTGEGLEELTEILETIL 362 >gi|322515697|ref|ZP_08068669.1| tRNA modification GTPase TrmE [Actinobacillus ureae ATCC 25976] gi|322118229|gb|EFX90524.1| tRNA modification GTPase TrmE [Actinobacillus ureae ATCC 25976] Length = 493 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT+ TTR ++ + + +DT G+ A Sbjct: 258 VVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTRDVLCEHIHIDGMPLHIIDTAGLREAS 317 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLILILNKI 140 D ++ I+ +W I+ AD V L++DS + K D L ++ + + +I NK+ Sbjct: 318 DEVERIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTVIRNKV 376 Query: 141 D 141 D Sbjct: 377 D 377 >gi|227356207|ref|ZP_03840596.1| GTP-binding protein [Proteus mirabilis ATCC 29906] gi|227163671|gb|EEI48587.1| GTP-binding protein [Proteus mirabilis ATCC 29906] Length = 501 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + +DT GI A Sbjct: 9 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELDGEEFIIIDTGGIDGA 68 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ L + K + + L+ NK D + Sbjct: 69 EEGVETHMASQSLQAIQEADIVLFLVDARAGLMPADQGIAKHLRGVEKKTYLVANKTDGI 128 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + L A+ + + + + F ++A+ G G ++ Sbjct: 129 DIDTAL--ADFYS--LGLGEIFPIAASHGRGVSQLI 160 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + + +DT G+ Sbjct: 216 LAIVGRPNVGKSTLTNRMLGEERVVVYDMPGTTRDSIYIPMERDGKEYILIDTAGVRKRG 275 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K++ K + + I+ ++ LV+D+ + LL I L++ +NK D Sbjct: 276 KVKETVEKFSVIKTLQAIEDCNVALLVIDAREGISDQDLSLLGYILNSGRSLVIAVNKWD 335 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + KL F++ + +SA G G ++ Y C+T Sbjct: 336 GMTQEDREQVKDMLDLKLGFVDFARVHFISALHGSGVGNLFESIQEAYTCAT 387 >gi|210612261|ref|ZP_03289209.1| hypothetical protein CLONEX_01409 [Clostridium nexile DSM 1787] gi|210151635|gb|EEA82642.1| hypothetical protein CLONEX_01409 [Clostridium nexile DSM 1787] Length = 442 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 4/142 (2%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 + FF E +++ R +A+VG N GKS++VN+ +G IV+ TTR + + Sbjct: 162 VKFFPERNATEEEDERP-RIAIVGKPNVGKSSIVNKLLGENRVIVSDVAGTTRDAIDTAI 220 Query: 66 SEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + VF+DT G+ K+ + I + + ++ AD+V +V+D+ + + Sbjct: 221 KYHGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLMVIDAVEGITEQDAKI 280 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 +R +I+++NK D ++ Sbjct: 281 AGIAHERGKGIIIVVNKWDAIE 302 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + V+ + + +DT GI + Sbjct: 5 IVAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVTWLDKEFTMIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SKDIILSQMREQAQIAIDTADVIVFITDVRQGL-VDADSKVADMLRRSGKPVVLVVNKVD 123 Query: 142 CVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++L+ E N + I +SA G D+L+ + P Sbjct: 124 SF--QKLMPDVYEFYN--LGIGDPIPISAASRLGIGDMLDEVVKFFP 166 >gi|197285696|ref|YP_002151568.1| GTP-binding protein EngA [Proteus mirabilis HI4320] gi|238693198|sp|B4EZS9|DER_PROMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194683183|emb|CAR43820.1| GTP-binding protein [Proteus mirabilis HI4320] Length = 496 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + +DT GI A Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELDGEEFIIIDTGGIDGA 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ L + K + + L+ NK D + Sbjct: 64 EEGVETHMASQSLQAIQEADIVLFLVDARAGLMPADQGIAKHLRGVEKKTYLVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + L A+ + + + + F ++A+ G G ++ Sbjct: 124 DIDTAL--ADFYS--LGLGEIFPIAASHGRGVSQLI 155 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G + +V TTR + + + + +DT G+ Sbjct: 211 LAIVGRPNVGKSTLTNRMLGEERVVVYDMPGTTRDSIYIPMERDGKEYILIDTAGVRKRG 270 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K++ K + + I+ ++ LV+D+ + LL I L++ +NK D Sbjct: 271 KVKETVEKFSVIKTLQAIEDCNVALLVIDAREGISDQDLSLLGYILNSGRSLVIAVNKWD 330 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + KL F++ + +SA G G ++ Y C+T Sbjct: 331 GMTQEDREQVKDMLDLKLGFVDFARVHFISALHGSGVGNLFESIQEAYTCAT 382 >gi|122702725|emb|CAL88552.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKVLNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER E+A A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDK-ER--ERA-YAFSSFGIPKSFNISVSHNRGISALIDAVLNALDL 168 >gi|120598182|ref|YP_962756.1| GTP-binding protein EngA [Shewanella sp. W3-18-1] gi|166225859|sp|A1RHQ7|DER_SHESW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120558275|gb|ABM24202.1| small GTP-binding protein [Shewanella sp. W3-18-1] Length = 488 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NK+D + Sbjct: 64 EEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + AE + + + + + ++A++G G +++ Y + Sbjct: 124 DADSAC--AEFWS--LGLGEVYQMAASQGRGVTNMIEYALT 160 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + + V +DT G+ + Sbjct: 201 LAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMEREGREYVIIDTAGV-RRR 259 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+++ + S ++ A++V L++D+ + LL L++ +NK Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLIIDAREGVAEQDLGLLGFALNAGRALVIAVNKW 319 Query: 141 DCVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + +R+ ++E+ +L FI+ + +SA G G Sbjct: 320 DGIDQGIKDRV--KSELDRRLGFIDFARIHFISALHGTGV 357 >gi|269140891|ref|YP_003297592.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202] gi|267986552|gb|ACY86381.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202] gi|304560649|gb|ADM43313.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Edwardsiella tarda FL6-60] Length = 455 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 280 DEVERIGIARAWQEIEQADRVLFMVDG 306 >gi|268320269|ref|YP_003293925.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii FI9785] gi|262398644|emb|CAX67658.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii FI9785] Length = 461 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I AD+V L++D+ ++L +LL A + + I+ILNK Sbjct: 282 IHHTEDKVEKIGVERSKKAIAEADLVLLLLDASQDLTDEDKNLLNLTANK--KRIIILNK 339 Query: 140 ID 141 D Sbjct: 340 QD 341 >gi|260433297|ref|ZP_05787268.1| ribosome-associated GTPase EngA [Silicibacter lacuscaerulensis ITI-1157] gi|260417125|gb|EEX10384.1| ribosome-associated GTPase EngA [Silicibacter lacuscaerulensis ITI-1157] Length = 484 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 2/114 (1%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ +A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEGRLGDLRFTVIDTAGLEDA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 DS M RL+ + AD VCL + R +L EI ++ S+ +++ Sbjct: 64 TDDSLQGRMRRLTERAVDMAD-VCLFMIDARTGVTPTDELFAEILRKRSKHVIL 116 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 22/190 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + TR + + + + DT G+ Sbjct: 202 VAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLRIDWNGTPMRIFDTAGMRKKA 261 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 +D KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 262 KVQDKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVVVAVNK 319 Query: 140 IDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 D K E+L + E +L+ + VSA G G D DV N Sbjct: 320 WDVEEHKQEKLRDLKESFERLLPQLRGAPLVTVSAKTGRGLDRLHEAILRAHDVWNRRIP 379 Query: 185 TLPLAPWVYS 194 T L W+ + Sbjct: 380 TAALNRWLTA 389 >gi|255660441|ref|ZP_05405850.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37] Length = 388 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G TN GKS+L+N + +IV++ +TR +V G + I LDT GI K Sbjct: 166 IAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHK 225 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 K I+ S+ +IK A++V ++D+ Sbjct: 226 SGLEKAGIKKSFESIKQANLVIYLLDA 252 >gi|254526548|ref|ZP_05138600.1| small GTP-binding protein domain [Prochlorococcus marinus str. MIT 9202] gi|221537972|gb|EEE40425.1| small GTP-binding protein domain [Prochlorococcus marinus str. MIT 9202] Length = 457 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +QD+ ++++G N GKS+L+N G K +IV+ TT + ++ + ++ + Sbjct: 170 IQDDEEKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKII 229 Query: 76 DTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI N K I ++ +I +D+ LV+D+ + L I ++ Sbjct: 230 DTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQDQKLAGRIEEQGRA 289 Query: 133 LILILNKIDCV-KPERLLEQA--EIANKLVFI--EKTFMVSATKGHGCDDVLNY 181 I+++NK D V K + Q E+ +KL F+ K +SA G D++ + Sbjct: 290 CIIVVNKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQRVDNIFEH 343 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR + +IV K TR S + +DT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 84 KDSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS IR + ++ A + LVVD ++ + + K + S + I+ +NK C Sbjct: 65 DDSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + A KL E VSA G G D+L+ + LP Sbjct: 123 ESTTLGISLASEFWKLGLGEPN-PVSAIHGSGTGDLLDLVIGELP 166 >gi|188528222|ref|YP_001910909.1| tRNA modification GTPase TrmE [Helicobacter pylori Shi470] gi|254811486|sp|B2UVJ7|MNME_HELPS RecName: Full=tRNA modification GTPase mnmE gi|188144462|gb|ACD48879.1| tRNA modification GTPase TrmE [Helicobacter pylori Shi470] Length = 450 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNTQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|122702621|emb|CAL88500.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122701557|emb|CAL88168.1| GTPase [Helicobacter pylori] gi|242255830|gb|ACS88899.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLNL 168 >gi|212640677|ref|YP_002317197.1| tRNA modification GTPase TrmE [Anoxybacillus flavithermus WK1] gi|212562157|gb|ACJ35212.1| tRNA modification GTPase, TrmE [Anoxybacillus flavithermus WK1] Length = 464 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N +IVT TTR ++ V+ + + LDT G Sbjct: 224 RDGLATVIIGRPNVGKSSLLNSLAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ + L V L + A + +I+I+NK Sbjct: 284 IRETEDIVERIGVERSRKVLKEADLILLVLNYNEPLTVEDEQLFE--AVKGMDVIVIVNK 341 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM 166 D K + ++A L I + + Sbjct: 342 TDLPKQIDMDRVKQLAQGLPIITTSLL 368 >gi|122700789|emb|CAL87983.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISALIDAILNTLNL 168 >gi|119471653|ref|ZP_01614038.1| tRNA modification GTPase [Alteromonadales bacterium TW-7] gi|119445432|gb|EAW26719.1| tRNA modification GTPase [Alteromonadales bacterium TW-7] Length = 454 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 V D ++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 203 VTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHID 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE-IA 127 + +DT G+ + D ++ I +W I AD V ++D + + H + E +A Sbjct: 263 GMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVLFMLDGTDTVDTDPHKIWPEFMA 322 Query: 128 K--RSSRLILILNKID 141 K + + +I NK D Sbjct: 323 KLPKGMGVTVIRNKAD 338 >gi|18075587|emb|CAD11189.1| GTP-binding protein [Helicobacter pylori] gi|18075589|emb|CAD11190.1| GTP-binding protein [Helicobacter pylori] gi|18075591|emb|CAD11191.1| GTP-binding protein [Helicobacter pylori] gi|122700753|emb|CAL87965.1| GTPase [Helicobacter pylori] gi|122700759|emb|CAL87968.1| GTPase [Helicobacter pylori] gi|122700763|emb|CAL87970.1| GTPase [Helicobacter pylori] gi|122700835|emb|CAL88006.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNTLNL 168 >gi|154483917|ref|ZP_02026365.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC 27560] gi|149735408|gb|EDM51294.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC 27560] Length = 459 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N +G +IVT TTR + ++ + +DT GI + +D Sbjct: 227 ILGKPNAGKSSLLNLMLGEDRAIVTDIEGTTRDTLEENINFNGLSLKIIDTAGIRDTEDL 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ + + K D++ VVD REL N +++K I + + I+++NK D Sbjct: 287 VERIGVNKAKEIAKEGDLIIYVVDGSRELDDNDREIIKLINDKQA--IILVNKSDM 340 >gi|325855153|ref|ZP_08171776.1| ribosome biogenesis GTPase Der [Prevotella denticola CRIS 18C-A] gi|325483890|gb|EGC86834.1| ribosome biogenesis GTPase Der [Prevotella denticola CRIS 18C-A] Length = 437 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + + AD+V +VD+ + D+ + + ++L+ NK+ Sbjct: 62 VKSDDIFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + AE + + + VSA G G D+L+ L L AP S DQ D Sbjct: 122 D--NSGEYYQAAEFYK--LGLGEPICVSAATGGGTGDLLDILLEKLKDAP-DESVDQ--D 174 Query: 201 LPMF 204 +P F Sbjct: 175 IPRF 178 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 5/135 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++D+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRSIENSDVCILMLDATRGIEAQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 V--KPERLLEQAEIA 155 V K +++++ E A Sbjct: 299 VEDKNQKVIDTFENA 313 >gi|325578764|ref|ZP_08148811.1| ribosome-associated GTPase EngA [Haemophilus parainfluenzae ATCC 33392] gi|325159588|gb|EGC71720.1| ribosome-associated GTPase EngA [Haemophilus parainfluenzae ATCC 33392] Length = 506 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 220 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRG 279 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 280 KVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNTGRSLVIVVNKWD 339 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 340 GLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 391 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 11/169 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I+ AD+V +VD+ L + I + L++ +++ +++ NK Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTAADIGIANYLRQRTNKTT--VVVANKT 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 D + + AE + + K ++A++G G ++ + + PLA Sbjct: 123 DGIDADS--HCAEFYQ--LGLGKIEQIAASQGRGVTQLMEQVLA--PLA 165 >gi|124023844|ref|YP_001018151.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9303] gi|123964130|gb|ABM78886.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9303] Length = 461 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV K T R+ G ++E ++V DT G+ Sbjct: 12 VAIIGRPNVGKSTLVNRLCRSREAIVDDKPGVTRDRTYQDGFWGDREFKVV--DTGGLVF 69 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + + A + ++VD + + + + + + ++ +NK Sbjct: 70 DDDSEFLPEIREQANLALAEASVALVIVDGQQGVTAADESIAEWLRMQPCPTLVAVNK-- 127 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C P++ L A +L E F +SA G G D+L+ + S LP Sbjct: 128 CESPDQGLAMAAEFWRLGLGEP-FPISAIHGAGTGDLLDRVLSLLP 172 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N G +IV+ TTR + + + +DT GI + Sbjct: 186 MAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDTIDTRLEREGHPWRLIDTAGIRRRR 245 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I S+ I+ +D+ LV+D+ + L I +L++NK D Sbjct: 246 SVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEDDGRACVLVVNKWD 305 Query: 142 CVKPER---LLEQAEIANKLVFIEKTFMV--SATKGHGCDDVL 179 V+ + + + E+ KL F++ M+ SA G + + Sbjct: 306 AVEKDSHTMPMVEKELRAKLYFLDWATMLFTSALTGQRVESIF 348 >gi|73667142|ref|YP_303158.1| GTP-binding protein EngA [Ehrlichia canis str. Jake] gi|72394283|gb|AAZ68560.1| Small GTP-binding protein domain:GTP-binding domain [Ehrlichia canis str. Jake] Length = 439 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 35/225 (15%) Query: 6 ITFFNEHK-DFVQ-DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 + F EH D ++ DN R +++VG NAGKST VN +G IV+ + TTR + Sbjct: 158 LPFVGEHDLDILKSDNIR---LSIVGRPNAGKSTFVNSLLGESRMIVSPEAGTTRDSIDI 214 Query: 64 IVSEKESQIVFLDTPGIFNAK--------DSYHKLMIRLSWSTIKHADIVCLVVDSHREL 115 K+ +DT G+ S HK + +I +DIV LV+DS + Sbjct: 215 EYQYKDQMFTLIDTAGMRKKAKVIEEIEVSSVHK-----TIGSINRSDIVVLVIDSVYGI 269 Query: 116 KVNIHDL-LKEIAKRSSR-LILILNKIDCV-KPER--LLEQAEIANKLVFIEKTFMVSAT 170 + DL + ++A ++ + LI+ LNK D + + +R LL+ NKL F +SA Sbjct: 270 EQ--QDLYIADLAIQNGKALIVALNKWDMIARKDRSELLKDICNYNKLNFEVPIVEISAL 327 Query: 171 KGHGCDDVLN-------YL---CSTLPLAPWVYSADQISDLPMFH 205 K C+ V++ YL ST L W+ A P+FH Sbjct: 328 KNINCNKVIDKSIGLYKYLKMRISTPMLNKWLKLAVDYHKPPLFH 372 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKST+ NR K +IV++ TR G + +DT G+ N Sbjct: 4 IAIVGLPNVGKSTIFNRLTNQKSAIVSNTPNLTRDRREGNADLCGLKFKVIDTGGVDNTI 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 L++ I+ DIV VVD+ E + K + K + + +IL+ NK + Sbjct: 64 -KLSALVLGQVKLAIEGCDIVFFVVDAKVEQDDKNLEFAKYLRKSTQKPVILVANKCESQ 122 Query: 144 K 144 K Sbjct: 123 K 123 >gi|238787834|ref|ZP_04631631.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641] gi|238724177|gb|EEQ15820.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641] Length = 454 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 279 DEVERIGIERAWHEIEQADRVLFMVDG 305 >gi|323692185|ref|ZP_08106428.1| GTP-binding protein HflX [Clostridium symbiosum WAL-14673] gi|323503759|gb|EGB19578.1| GTP-binding protein HflX [Clostridium symbiosum WAL-14673] Length = 418 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 13/175 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D + + A+VG TNAGKSTL+N+ GA + T RG+ +I+ D Sbjct: 196 RDRNYTLSAAIVGYTNAGKSTLLNKLTGAGILAEDKLFATLDPTTRGMELPSGQKILLTD 255 Query: 77 TPGIFNAKDSYHKL-MIRLSWSTIKHADIVCLVVDS-HRELKVNIH---DLLKEIAKRSS 131 T G F K +H + R + +++DI+ VVD ++ IH + L+++ + Sbjct: 256 TVG-FIRKLPHHLIEAFRSTLEEARYSDIILHVVDCVSPQMDSQIHIVYETLRKLEIKDK 314 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ + NKIDC++ E +L+ + ++ +SA G G +++ L + L Sbjct: 315 TIVTVFNKIDCLEQEVILKDLQSDYQV-------KISARTGEGLEELTEILETIL 362 >gi|317179628|dbj|BAJ57416.1| tRNA modification GTPase TrmE [Helicobacter pylori F30] Length = 450 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S +++ DIV V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLESCDIVLGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|292806512|gb|ADE42386.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|260583275|ref|ZP_05851051.1| ribosome-associated GTPase EngA [Haemophilus influenzae NT127] gi|260093682|gb|EEW77594.1| ribosome-associated GTPase EngA [Haemophilus influenzae NT127] Length = 503 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 217 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRG 276 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 277 KVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD 336 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 337 GLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 388 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 9/176 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I ADIV +VD+ L + + +R +++ +++ NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 143 VKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 125 IDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|163760113|ref|ZP_02167196.1| GTP-binding protein [Hoeflea phototrophica DFL-43] gi|162282512|gb|EDQ32800.1| GTP-binding protein [Hoeflea phototrophica DFL-43] Length = 413 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 26/200 (13%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + + ++ DT G ++ Sbjct: 174 IVALVGYTNAGKSTLFNRVTGAEVLAEDMLFATLDPTLRRMKLPHGNTVILSDTVGFISS 233 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLV---VDSHRELKV-NIHDLLKEIA---KRSSRLILI 136 ++ R + + AD++ V D R + ++ ++LK + +L+ + Sbjct: 234 LPTHLVAAFRATLEEVVEADLILHVRDMADPDRASQAGDVEEILKSLGLNEGDGRKLVEV 293 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS------------ 184 NKID + E + A K E VS+ G G D++L + + Sbjct: 294 WNKIDLLSEEAAEDLKTRAEK---SENAIAVSSVTGEGIDELLMRIETIISGKLVSRNVT 350 Query: 185 ----TLPLAPWVYSADQISD 200 + L PW+Y ++S+ Sbjct: 351 LGPDQMKLVPWIYERGRVSE 370 >gi|332712235|ref|ZP_08432163.1| small GTP-binding protein domain protein [Lyngbya majuscula 3L] gi|332349041|gb|EGJ28653.1| small GTP-binding protein domain protein [Lyngbya majuscula 3L] Length = 526 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 12/164 (7%) Query: 29 GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 G NAGKS+++NR +++ V + T + ++ E IVF+D+PG N+ H Sbjct: 57 GEFNAGKSSVLNRLSNDELAAVG--ILPTTNSIQPYYPEGFDGIVFIDSPGT-NSIIERH 113 Query: 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCVKP-- 145 + L+ + ++HADI+ V R L + D L ++K R +I+I+NK+D V P Sbjct: 114 Q---ELTENYLQHADIILFVTSVERPLTKSELDFLSLVSKIWVRKVIVIINKVDLVTPQE 170 Query: 146 -ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 E+++ + VF E F VS G+ D + ++L L Sbjct: 171 SEQIISHVKDGLHDVFTEVPPLFTVSTRTGNDIDTLRDFLLEFL 214 >gi|316933671|ref|YP_004108653.1| ribosome-associated GTPase EngA [Rhodopseudomonas palustris DX-1] gi|315601385|gb|ADU43920.1| ribosome-associated GTPase EngA [Rhodopseudomonas palustris DX-1] Length = 458 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL NR VG K+++V TR G + +DT G+ Sbjct: 4 TLAIIGRPNVGKSTLFNRLVGQKLALVDDAPGVTRDRREGEGRLGDLTFTLIDTAGLDEG 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 K S M + + I+HAD + V+D+ L N + A+R+++ ++L+ NK + Sbjct: 64 PKGSLTARMQEQTETAIEHADALLFVIDARAGLTPN-DRAFADFARRANKPVVLVANKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + + + + +SA G G ++ + L +P Sbjct: 123 G----KHGEIGAMESYALGLGDPVQISAEHGEGLGELYDALRPLMP 164 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKST +NR +G + + + + TTR + V K + DT G+ Sbjct: 189 VAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTRDSIAVEVQWKGREFRVFDTAGLRRRS 248 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 ++ KL + + ++ A++V L++D+ E + I DL++ + L++ +N Sbjct: 249 RIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFEEQDLRIADLVE---REGRALVIAVN 305 Query: 139 KIDCVK 144 K D ++ Sbjct: 306 KWDLME 311 >gi|238917975|ref|YP_002931492.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750] gi|238873335|gb|ACR73045.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750] Length = 459 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 7/152 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G TNAGKS+L+N + +IVT TTR + +++ + +DT GI D Sbjct: 227 ILGKTNAGKSSLLNVLAREERAIVTDIEGTTRDTLEEMINLSGVTLNLIDTAGIRKTDDV 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + + + + AD+V VVDS R L N +++++ I + ++++ILNK D + Sbjct: 287 VESIGVNKAKKLAEVADLVIYVVDSSRSLDDNDYEIMELI--KDKKVLVILNKADLAQ-- 342 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + AE K++ E T +SA + G +++ Sbjct: 343 --VTTAEDIKKIINCE-TVTISAKQETGIEEL 371 >gi|122702227|emb|CAL88304.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPGDEDLKLFREVFKINPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + + K+F +S + G +++ + STL L Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSTLNL 168 >gi|122701687|emb|CAL88233.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|172059049|ref|YP_001815509.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15] gi|205829139|sp|B1YGA8|MNME_EXIS2 RecName: Full=tRNA modification GTPase mnmE gi|171991570|gb|ACB62492.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15] Length = 460 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V +IVT TTR + V+ + + +DT G Sbjct: 220 REGLSTAIIGRPNVGKSSLLNTLVQEAKAIVTDIAGTTRDTIEEYVNVRGVPLKLIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ LV++ + L D+L A R I+I+NK Sbjct: 280 IRETEDIVERMGVEKSRQALNSADLILLVLNGNDALTE--EDVLLFEAIRGMNAIIIVNK 337 Query: 140 IDCVKPERLLEQAEIAN 156 D + L +E+A+ Sbjct: 338 SDLTQAIDLTRVSELAD 354 >gi|325292781|ref|YP_004278645.1| GTP-binding protein HFLX [Agrobacterium sp. H13-3] gi|325060634|gb|ADY64325.1| GTP-binding protein HFLX [Agrobacterium sp. H13-3] Length = 479 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 33/198 (16%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 242 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 301 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA-------KRSSRLIL 135 ++ R + + AD++ V D S + D+L+ + + R+I Sbjct: 302 LPTHLVAAFRATLEEVLEADLILHVRDMSDPDNAAQSADVLRILGDLGIDEKEAEKRIIE 361 Query: 136 ILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS-------- 184 + NK+D ++PE ++E+AE + + VSA G G D +++ + Sbjct: 362 VWNKVDRLEPEAHDAIIERAEGRSDI------RAVSAVTGEGVDALMDEISGRLSGVLTE 415 Query: 185 --------TLPLAPWVYS 194 LPL WVYS Sbjct: 416 TTVVLSVEQLPLISWVYS 433 >gi|206602913|gb|EDZ39393.1| Putative GTP binding protein [Leptospirillum sp. Group II '5-way CG'] Length = 518 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 4/126 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TN GKSTL+N+ G+ V T R + +E +I+ DT G Sbjct: 341 IVSLVGYTNVGKSTLLNQLTGSSVLTENRMFATLDPTTRRLRFPREREIILTDTVGFIRN 400 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIH---DLLKEIAKRSSRLILILNK 139 + ++ +K A ++ V D+ H +++ I +LLKE+ ILILNK Sbjct: 401 LPGDLRRAFLATFDELKDAHLLLHVADAFHPKMEEQIQRVEELLKEMEIDRIPRILILNK 460 Query: 140 IDCVKP 145 DC+ P Sbjct: 461 TDCLSP 466 >gi|171463406|ref|YP_001797519.1| small GTP-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238689056|sp|B1XU78|DER_POLNS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|171192944|gb|ACB43905.1| small GTP-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 454 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 10/177 (5%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 + + V D +R +A+VG N GKSTL+N+ +G + I TTR + Sbjct: 169 DEDELVNDPNRPMKIAVVGRPNVGKSTLINKLIGEERVIAFDMPGTTRDAIEVPFERNGK 228 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +DT G+ ++ K + + I ++V L++D+ +++ + I Sbjct: 229 PYILVDTAGLRRRGKVFEAIEKFSVVKTLQAIADCNVVILMLDAQQDISEQDAHIAGFIV 288 Query: 128 KRSSRLILILNK---IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + L++ +NK ID ER + EIA KL F++ +SA KG G D+ Sbjct: 289 EAGRALVVAVNKWDGIDTYVKER--ARLEIAQKLRFLDFANVHPISAKKGTGLKDLF 343 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 + +VG +N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VITIVGRSNVGKSTLFNRLTRSRDALVADFSGLTRDRHYGKCRIGERAFICVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AK M + + + +DIV +VD + + + K +IL +NK + Sbjct: 64 AKTGIVAEMAKQTKQVVAESDIVIFLVDGRLGMAPQDRVIADFLRKTGRPVILAVNKTEG 123 Query: 143 VKPERLLEQAEIANK---LVFIEKTFMVSATKGHGC----DDVLNYLCSTLP 187 + QA + + + + F +S+ G G DD L+ L P Sbjct: 124 M-------QASVVTADFHELGLGEPFPISSAHGDGVRGLIDDALDSLGVAEP 168 >gi|123444347|ref|YP_001008312.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166234832|sp|A1JT87|MNME_YERE8 RecName: Full=tRNA modification GTPase mnmE gi|122091308|emb|CAL14194.1| putative thiophene and furan oxidation protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 454 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 279 DEVERIGIERAWHEIEQADRVLFMVDG 305 >gi|4467657|emb|CAB37780.1| GTP-binding protein homologue [Helicobacter pylori] gi|122701615|emb|CAL88197.1| GTPase [Helicobacter pylori] gi|122701685|emb|CAL88232.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|322392688|ref|ZP_08066148.1| ribosome-associated GTPase EngA [Streptococcus peroris ATCC 700780] gi|321144680|gb|EFX40081.1| ribosome-associated GTPase EngA [Streptococcus peroris ATCC 700780] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + + +S+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N ++F ++N +L+G N GKS+L+N +G I + TTR + ++ + Sbjct: 162 NLPQEFEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDAD 221 Query: 70 SQ-IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 Q +DT G+ + Y K + + I +D+V +V+++ RE I Sbjct: 222 GQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGF 281 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K +I+++NK D ++ Sbjct: 282 AHEAGK---GMIIVVNKWDTLE 300 >gi|197122609|ref|YP_002134560.1| GTP-binding protein EngA [Anaeromyxobacter sp. K] gi|196172458|gb|ACG73431.1| small GTP-binding protein [Anaeromyxobacter sp. K] Length = 465 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 13/166 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR G +V+IV TR V + + +DT G Sbjct: 7 VVALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGF--E 64 Query: 84 KDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILIL 137 +S +LM ++ + + A V LVVD L N+ DLL+ K L + + Sbjct: 65 PESRDRLMSQVREQAQLAVDEASAVVLVVDGRDGLTALDRNVADLLRRAGK---PLFVAV 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 NK+D + E + AE L F E VSA G G +++ + Sbjct: 122 NKVDTARTEEDVPLAEFYG-LGFGE-VHAVSAEHGRGVSGLVDAIV 165 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKST VN +G + +V+ TTR + +V+ K + V DT GI + Sbjct: 198 LAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGRRFVVTDTAGIRRKR 257 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ ++R + + A++V ++D+ LL +A++ L++++NK Sbjct: 258 SIALKVESFSVVR-AMKAMDQAEVVACLLDATEAGVEQDARLLGLVAEKGKALVIVVNKW 316 Query: 141 DCVKPERLLE---QAEIANKLVFI--EKTFMVSATKGHGCDDVL 179 D + E + + E+ +L F+ VSA + G VL Sbjct: 317 DIAEREGATQDWYRKELTKRLPFVGFAPMLFVSAKERRGVHRVL 360 >gi|122700705|emb|CAL87941.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILDTLDL 168 >gi|4467655|emb|CAB37779.1| GTP-binding protein homologue [Helicobacter pylori] gi|122701539|emb|CAL88159.1| GTPase [Helicobacter pylori] gi|242255860|gb|ACS88914.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALNL 168 >gi|163784433|ref|ZP_02179314.1| GTP-binding protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880300|gb|EDP73923.1| GTP-binding protein [Hydrogenivirga sp. 128-5-R1-1] Length = 451 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 VA+VG N GKS+L NR +G K +IV TR R I + + I F +DT G Sbjct: 4 VAIVGRPNVGKSSLFNRIIGQKKAIVEDIPGITRD--RLIQTTEWRNIPFELVDTGGYIE 61 Query: 83 AKDSYHKLMIRLSWST-IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D IR ++ AD LVVDS L D+ + + K + + +NK+D Sbjct: 62 TDDDKFAPFIRKQIEKEMEDADAFILVVDSKTGLTEADKDIARILHKTEKPVYIAVNKVD 121 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + E E+ +K F VS + +G D+L+ + +P Sbjct: 122 NPSQEDTIYEFYELG-----FDKVFPVSTIQKYGVADLLDEVIENIP 163 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 8/138 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA++G NAGKS+++N G + ++V++ TTR +V +V + FLDT G+ + Sbjct: 187 VAIIGKPNAGKSSILNAITGEERALVSNIPGTTRDVVDTMVKIENKTYRFLDTAGLRKKS 246 Query: 84 KDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K Y + + IK AD+V V+D+ + + K +++++NKID Sbjct: 247 KVDYGVEFFSVGRTLDAIKKADVVVHVIDAEQGATEQDQKIAHLSQKYYKPVVIVINKID 306 Query: 142 CVKPERLLEQAEIANKLV 159 RL ++ E+ N L+ Sbjct: 307 -----RLPKRKEVLNSLL 319 >gi|122701425|emb|CAL88102.1| GTPase [Helicobacter pylori] gi|122701427|emb|CAL88103.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLNL 168 >gi|33593199|ref|NP_880843.1| GTP-binding protein EngA [Bordetella pertussis Tohama I] gi|33597408|ref|NP_885051.1| GTP-binding protein EngA [Bordetella parapertussis 12822] gi|33602148|ref|NP_889708.1| GTP-binding protein EngA [Bordetella bronchiseptica RB50] gi|41017018|sp|Q7VWL4|DER_BORPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41017021|sp|Q7W6Q0|DER_BORPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41017022|sp|Q7WHN4|DER_BORBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33563574|emb|CAE42473.1| putative GTP-binding protein [Bordetella pertussis Tohama I] gi|33573835|emb|CAE38143.1| putative GTP-binding protein [Bordetella parapertussis] gi|33576586|emb|CAE33664.1| putative GTP-binding protein [Bordetella bronchiseptica RB50] gi|332382610|gb|AEE67457.1| GTP-binding protein EngA [Bordetella pertussis CS] Length = 451 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 7/177 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 VALVG N GKSTL NR ++ ++V TR G ++ + +DT G Sbjct: 6 VVALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGDTPFLVIDTGGFEPV 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILNKID 141 AKD M R + I AD+V +VD+ + + H++ + + K R++L +NK + Sbjct: 66 AKDGILAEMARQTRQAIAEADVVVFLVDARAGVNAHDHEIARLLRKSGQQRVLLAVNKAE 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + + A + + + +SA G G D++ S L +AP + +Q+ Sbjct: 126 GMG----VGNATGDFHELGLGEPHPISAAHGDGIVDLIEIALSGL-VAPPADTGEQL 177 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 10/163 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N +G + I TTR + + +DT G+ Sbjct: 188 LAIVGRPNVGKSTLINTLLGEERVIAFDMPGTTRDAIEIDFERDGRKYTLIDTAGLRKRG 247 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK-- 139 ++ K + + I+ +++V L++D+ E+ + + + +++ +NK Sbjct: 248 KVFEAIEKFSVIKTLQAIEASNVVLLMIDAQAEVSEQDAHIAGFVLETGRAVVVAINKWD 307 Query: 140 -IDCVKPERLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVL 179 +D + ER+ + E KL F+ M +SA KG G +L Sbjct: 308 GLDSDQRERI--EREFQRKLRFLGFARMHTISALKGQGVKPLL 348 >gi|332163526|ref|YP_004300103.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318608032|emb|CBY29530.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia enterocolitica subsp. palearctica Y11] gi|325667756|gb|ADZ44400.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861751|emb|CBX71925.1| tRNA modification GTPase mnmE [Yersinia enterocolitica W22703] Length = 454 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ A Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I+ AD V +VD Sbjct: 279 DEVERIGIERAWHEIEQADRVLFMVDG 305 >gi|301155940|emb|CBW15410.1| predicted GTP-binding protein [Haemophilus parainfluenzae T3T1] Length = 506 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 220 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRG 279 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 280 KVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD 339 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 340 GLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 391 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I+ AD+V +VD+ L + I + L++ +++ +++ NK Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTAADIGIANYLRQRTNKTT--VVVANKT 122 Query: 141 DCVKPE 146 D + + Sbjct: 123 DGIDAD 128 >gi|297202839|ref|ZP_06920236.1| GTP-binding protein HflX [Streptomyces sviceus ATCC 29083] gi|297148230|gb|EDY61685.2| GTP-binding protein HflX [Streptomyces sviceus ATCC 29083] Length = 498 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + DT G Sbjct: 276 SVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRH 335 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + R + + +D++ VVD SH E + ++++++ I+++NK Sbjct: 336 LPHHLVEAFRSTMEEVGESDLILHVVDGSHPNPEEQLAAVREVVRDVGATGVPEIVVINK 395 Query: 140 IDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLCSTLP 187 D P L +L+ IEK + VSA G G ++L + + LP Sbjct: 396 ADAADPLTL-------QRLMRIEKRSIAVSARTGQGIPELLALIDNELP 437 >gi|292806474|gb|ADE42367.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFSISVSHNRGISALIDAILSVLDL 168 >gi|56476106|ref|YP_157695.1| GTP-binding protein EngA [Aromatoleum aromaticum EbN1] gi|81821192|sp|Q5P7B7|DER_AZOSE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56312149|emb|CAI06794.1| GTP-binding protein engA [Aromatoleum aromaticum EbN1] Length = 442 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 + LVG N GKSTL NR + ++V + TR GI + + +DT G F+ Sbjct: 4 TIVLVGRPNVGKSTLFNRLTKTRDALVADQPGLTRDRHYGIGRVGDRDYLVVDTAG-FDP 62 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 AKD M R + I AD + +VD L + + + + + L++NK + Sbjct: 63 VAKDGIMHEMARQAEQAIAEADALLFMVDGRSGLTPHDEQIAARLRRAGRPVYLVVNKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + ER + AE + + VSA+ G G +L+ + P Sbjct: 123 GM--ERTMVAAEF--HALGLGDPLPVSASHGEGVKQLLDLVLGAFP 164 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFL 75 +D R+ +A+VG N GKST VN +G + I TTR + I E++ + + Sbjct: 171 EDEGRTPRIAIVGRPNVGKSTFVNSLLGEERVIAFDMPGTTRDAI-AIPFERDGRHYTLI 229 Query: 76 DTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ ++ K + + I+ A++V LV+D+ +++ + I + Sbjct: 230 DTAGLRRRGKVFEAVEKFSVIKTLQAIEQANVVVLVLDASQDISDQDAHIAGFILEAGRA 289 Query: 133 LILILNKIDCVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 L++ +NK D V R L++Q ++ KL F+ + +SA KG G V+ Sbjct: 290 LVVAVNKWDDVDDYRRELIKQ-DLTRKLNFLSFARFHYISALKGAGVAAVM 339 >gi|309390345|gb|ADO78225.1| tRNA modification GTPase trmE [Halanaerobium praevalens DSM 2228] Length = 464 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 9/142 (6%) Query: 8 FFNEHKDFVQDNSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 + + D + +S+ G + +VG N GKS+L+N F+ K +IVT TTR + Sbjct: 205 YLKQETDKLLKSSKQGKIYKEGLKTVIVGKPNVGKSSLLNYFLEEKRAIVTDIPGTTRDV 264 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + ++ K + +DT GI KD+ K+ + + + AD+V ++D ++ + Sbjct: 265 IEEYINLKGIPLKIIDTAGIRETKDAVEKIGVEKTRKLAEKADLVLFMLDINQGITAEDR 324 Query: 121 DLLKEIAKRSSRLILILNKIDC 142 ++ + I ++ +I+I+NK D Sbjct: 325 EIYQLI--KNKPVIIIVNKTDL 344 >gi|227889160|ref|ZP_04006965.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii ATCC 33200] gi|227850389|gb|EEJ60475.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii ATCC 33200] Length = 487 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N +IVT TTR + VS K + +DT G Sbjct: 248 RNGLATAIVGRPNVGKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAG 307 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I AD+V L++D+ ++L +LL A + + I+ILNK Sbjct: 308 IHHTEDKVEKIGVERSKKAIAEADLVLLLLDASQDLTDEDKNLLNLTANK--KRIIILNK 365 Query: 140 IDC 142 D Sbjct: 366 QDL 368 >gi|254519548|ref|ZP_05131604.1| GTP-binding protein [Clostridium sp. 7_2_43FAA] gi|226913297|gb|EEH98498.1| GTP-binding protein [Clostridium sp. 7_2_43FAA] Length = 402 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 22/164 (13%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE-KESQIVFLDT 77 N+ +A+ G TNAGKS+L+NRF+G +VS+V+ K TT V+ + ++ +DT Sbjct: 6 NANRKHIAVFGKTNAGKSSLINRFLGQEVSLVSEKEGTTTDPVQKAMELIPVGPVLIIDT 65 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSR--- 132 G F K ++ ++ + +K D+ + D +N DL KE AKR+ + Sbjct: 66 AG-FGDKSELGEVRVKRTLDILKRTDVAIYLFD------INDIDLEEFKE-AKRNFKKYN 117 Query: 133 --LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 ++++NK D V E +LE+ +I F + F+ S T G G Sbjct: 118 IPYVVVINKSDSVN-ENILEELQIK----FKDSIFLSSNT-GEG 155 >gi|225010004|ref|ZP_03700476.1| small GTP-binding protein [Flavobacteria bacterium MS024-3C] gi|225005483|gb|EEG43433.1| small GTP-binding protein [Flavobacteria bacterium MS024-3C] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 5/167 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR + + +IV TR G + +DT G + Sbjct: 2 SAIVAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGREFSVIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + K + + I AD + +VD + D+ K + + ++L +NK+ Sbjct: 62 LGSDDVFEKEIDKQVELAIDEADAIIFMVDVETGITGMDEDVAKLLRRVKKPVLLAVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + R+ E E N + + F +++ G G ++L+ L LP Sbjct: 122 DNAR--RIEESVEFYN--LGLGDFFTIASISGSGTGELLDALVLALP 164 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 179 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRKAK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 ++ + S I+H+D+ L++D+ R + ++ +A+R+++ I+IL NK D Sbjct: 239 VREDLEFYSVMRSVRAIEHSDVCILILDATRGFDGQVENIF-WLAQRNNKGIVILVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 LVE 300 >gi|292806428|gb|ADE42344.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILNTLNL 168 >gi|302878478|ref|YP_003847042.1| GTP-binding proten HflX [Gallionella capsiferriformans ES-2] gi|302581267|gb|ADL55278.1| GTP-binding proten HflX [Gallionella capsiferriformans ES-2] Length = 382 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%) Query: 20 SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +RSG V++VG TNAGKSTL NR A V + T + R + SE +IV DT Sbjct: 193 NRSGVFSVSIVGYTNAGKSTLFNRLTKANVYVANQLFATLDTTSRRMYSEGAGEIVVSDT 252 Query: 78 PGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSS 131 G + H L+ R + AD++ VVD+ +R+ ++ ++ +LKEI Sbjct: 253 VGFI--RHLPHGLVAAFRSTLEETIQADLLLHVVDASNPNRDDQIAEVNKVLKEIDAGDI 310 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +++ NK+D + E+ + I + F+ SA G G DD+ Sbjct: 311 PQLMVYNKVDLTEMAAGAERDDCDR----IARVFL-SAVSGAGMDDL 352 >gi|269791929|ref|YP_003316833.1| tRNA modification GTPase TrmE [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099564|gb|ACZ18551.1| tRNA modification GTPase TrmE [Thermanaerovibrio acidaminovorans DSM 6589] Length = 450 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L+N +IVT TTR +V V + I LDT GI ++ Sbjct: 223 VTLVGRPNVGKSSLLNSLSRQARAIVTPIPGTTRDVVEAAVIHRGVPIKLLDTAGIRDSN 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS----HRE 114 D L ++L+ T+ AD+ LV+D HRE Sbjct: 283 DPIEALGVKLARETMLTADLRVLVLDGSSPPHRE 316 >gi|237724699|ref|ZP_04555180.1| tRNA modification GTPase mnmE [Bacteroides sp. D4] gi|229436894|gb|EEO46971.1| tRNA modification GTPase mnmE [Bacteroides dorei 5_1_36/D4] Length = 498 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ ++ + F+DT GI Sbjct: 257 VAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQGVTFRFIDTAGIRQTN 316 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDC 142 D+ L I ++ + A ++ ++DS + + +L EI ++I++ NK D Sbjct: 317 DTIENLGIERTFQKMDQAYVILWMIDS-TDAQRRFEELKAEILPHCEGKKMIILFNKSDL 375 Query: 143 V 143 + Sbjct: 376 L 376 >gi|122701453|emb|CAL88116.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|84496882|ref|ZP_00995736.1| putative ATP/GTP-binding protein [Janibacter sp. HTCC2649] gi|84383650|gb|EAP99531.1| putative ATP/GTP-binding protein [Janibacter sp. HTCC2649] Length = 493 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 19/193 (9%) Query: 5 EITFFNEHKDFVQDNSRSGC---VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I H+D + + R+ VA+ G TNAGKS+++NR GA V + T V Sbjct: 254 DIAGMKTHRDTKRGSRRANAIPSVAIAGYTNAGKSSILNRLTGAGVLVQNQLFATLDPTV 313 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVN 118 R + + F DT G + H+L+ R + + +D++ VVD SH + + Sbjct: 314 RRSETPDGREFTFTDTVGFV--RHLPHQLVEAFRSTLEEVAESDLLLHVVDGSHPDPEGQ 371 Query: 119 I---HDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHG 174 I +L ++ + ++++NK D + +E+ ++L EK +VSA G G Sbjct: 372 ISAVRSVLADVDATDVKEVIVVNKAD-------IADSEVIDRLRRNEKHVIVVSARTGAG 424 Query: 175 CDDVLNYLCSTLP 187 D ++ + LP Sbjct: 425 MDALVALIADELP 437 >gi|327312576|ref|YP_004328013.1| ribosome biogenesis GTPase Der [Prevotella denticola F0289] gi|326944058|gb|AEA19943.1| ribosome biogenesis GTPase Der [Prevotella denticola F0289] Length = 437 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 8/184 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + + AD+V +VD+ + D+ + + ++L+ NK+ Sbjct: 62 VKSDDIFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + AE + + + VSA G G D+L+ L L AP S DQ D Sbjct: 122 D--NSGEYYQAAEFYK--LGLGEPICVSAATGGGTGDLLDILLEKLKDAP-DESVDQ--D 174 Query: 201 LPMF 204 +P F Sbjct: 175 IPRF 178 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 5/135 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++D+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRSIENSDVCILMLDATRGIEAQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 V--KPERLLEQAEIA 155 V K +++++ E A Sbjct: 299 VEDKNQKVIDTFENA 313 >gi|163788828|ref|ZP_02183273.1| tRNA modification GTPase [Flavobacteriales bacterium ALC-1] gi|159876065|gb|EDP70124.1| tRNA modification GTPase [Flavobacteriales bacterium ALC-1] Length = 461 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + +IV+ TTR + +S F+DT GI K Sbjct: 223 VAIVGEPNVGKSTLLNALLNEDRAIVSEIAGTTRDTIEDEISIGGIGFRFIDTAGIRETK 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-----LILILNK 139 D + I+ ++ I+ + + + D+ + N+ + E+ K ++ L++I NK Sbjct: 283 DVVESIGIKKTFEKIEQSQVTIYLFDAQKNSD-NLEAVRIEVEKIRNKYPQKPLLVIANK 341 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 ID + L+ AEI I ++SA G G + + + L + Sbjct: 342 IDALDD---LQLAEINRT---IADVLLLSAKTGFGVEQLTSSLLN 380 >gi|145631633|ref|ZP_01787398.1| GTP-binding protein EngA [Haemophilus influenzae R3021] gi|144982767|gb|EDJ90296.1| GTP-binding protein EngA [Haemophilus influenzae R3021] Length = 504 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRG 277 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 278 KVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD 337 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 338 GLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 13/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I ADIV +VD+ L + I + L++ +++ I++ NK Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQ--RQNKTTIVVANKT 122 Query: 141 DCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 123 DGIDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|312879371|ref|ZP_07739171.1| small GTP-binding protein [Aminomonas paucivorans DSM 12260] gi|310782662|gb|EFQ23060.1| small GTP-binding protein [Aminomonas paucivorans DSM 12260] Length = 414 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 8/155 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKV-QTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+LVNR +G + SIV+ + TT +VR + + DT G + Sbjct: 12 VVVYGRRNAGKSSLVNRMLGMEASIVSPRPGTTTDPVVRSVEMGALGPVAVTDTAGYDDD 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D L S ++ ADIV V E + L +E+ +R ++++L + D Sbjct: 72 EDELGTLRTERSRKRLETADIVLFVTPGDEEPTSDEIALTEELHRRDKPVLVVLTRSD-- 129 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 E AE + + V G G +D+ Sbjct: 130 -----REIAEAKRRFAPGFRKIAVDNLTGRGIEDL 159 >gi|292806534|gb|ADE42397.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFFSFG-----MPKSFNISVSHNRGISALIDAILSALDL 168 >gi|242095354|ref|XP_002438167.1| hypothetical protein SORBIDRAFT_10g009065 [Sorghum bicolor] gi|241916390|gb|EER89534.1| hypothetical protein SORBIDRAFT_10g009065 [Sorghum bicolor] Length = 135 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES---QIVFL 75 N SG VA++G N GKSTL+N+ VG K+S VT K QT R + GI +S QI+ Sbjct: 11 NHCSGYVAVLGKPNVGKSTLINQMVGQKLSAVTDKPQTNRHCILGIYVWNQSTSLQIILY 70 Query: 76 DTPGIF 81 DT G+ Sbjct: 71 DTAGVI 76 >gi|241896284|ref|ZP_04783580.1| GTP-binding protein EngA [Weissella paramesenteroides ATCC 33313] gi|241870525|gb|EER74276.1| GTP-binding protein EngA [Weissella paramesenteroides ATCC 33313] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 VVAVVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTRAEWLTHEFRLIDTGGIDMG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + +++ + I AD++ +V S RE + + +I RS + ++L +NK+D Sbjct: 65 DEPFMSQIVQQAEIAIDEADVIVFMV-SAREGLTEADERVAKILYRSKKPVVLAVNKVDN 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++ L + L F + + +S G G D+L+ + + P Sbjct: 124 IE---LRSEIYEFYALGFGDP-YPISGAHGTGLGDLLDQVVANFP 164 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGI---F 81 + +G N GKS+LVN +G + IV+ TTR +I S + V +DT GI Sbjct: 178 SFIGRPNVGKSSLVNAILGEERVIVSDISGTTRDAIDTRFTSAYGDEFVMVDTAGIRKRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I +++V +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIDDSNVVLVVLNAEEGIREQDKHVAGYAHEAGRAVIIVVNKWD 297 Query: 142 CVK 144 ++ Sbjct: 298 TLE 300 >gi|145633562|ref|ZP_01789290.1| GTP-binding protein EngA [Haemophilus influenzae 3655] gi|144985768|gb|EDJ92382.1| GTP-binding protein EngA [Haemophilus influenzae 3655] Length = 504 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRG 277 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 278 KVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD 337 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 338 GLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 9/176 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFILIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I ADIV +VD+ L + + +R +++ +++ NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 143 VKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 125 IDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|153001514|ref|YP_001367195.1| GTP-binding protein EngA [Shewanella baltica OS185] gi|160876250|ref|YP_001555566.1| GTP-binding protein EngA [Shewanella baltica OS195] gi|217972557|ref|YP_002357308.1| GTP-binding protein EngA [Shewanella baltica OS223] gi|304410031|ref|ZP_07391650.1| ribosome-associated GTPase EngA [Shewanella baltica OS183] gi|307302256|ref|ZP_07582014.1| ribosome-associated GTPase EngA [Shewanella baltica BA175] gi|166225855|sp|A6WQP3|DER_SHEB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037160|sp|A9KWW9|DER_SHEB9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783166|sp|B8E9T1|DER_SHEB2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151366132|gb|ABS09132.1| small GTP-binding protein [Shewanella baltica OS185] gi|160861772|gb|ABX50306.1| small GTP-binding protein [Shewanella baltica OS195] gi|217497692|gb|ACK45885.1| small GTP-binding protein [Shewanella baltica OS223] gi|304351440|gb|EFM15839.1| ribosome-associated GTPase EngA [Shewanella baltica OS183] gi|306914294|gb|EFN44715.1| ribosome-associated GTPase EngA [Shewanella baltica BA175] gi|315268439|gb|ADT95292.1| ribosome-associated GTPase EngA [Shewanella baltica OS678] Length = 488 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NK+D + Sbjct: 64 EEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + AE + + + + + ++A++G G +++ Y + Sbjct: 124 DADSAC--AEFWS--LGLGEVYQMAASQGRGVTNMIEYALT 160 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + + V +DT G+ + Sbjct: 201 LAIIGKPNVGKSTLTNRILGEERVVVFDEPGTTRDSIYIPMEREGREYVIIDTAGV-RRR 259 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+++ + S ++ A++V L++D+ + LL L++ +NK Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNKW 319 Query: 141 DCVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + +R+ ++E+ +L FI+ + +SA G G Sbjct: 320 DGIDQGIKDRV--KSELDRRLGFIDFARIHFISALHGTGV 357 >gi|67458640|ref|YP_246264.1| GTP-binding protein EngA [Rickettsia felis URRWXCal2] gi|75536894|sp|Q4UMV9|DER_RICFE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|67004173|gb|AAY61099.1| Conserved GTP-binding protein [Rickettsia felis URRWXCal2] Length = 447 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 + LVG N GKSTL NR K +IV V R G + E + +DTPG+ Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTEGKIGSFE--FLLIDTPGLEE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS + +I + I AD++C +VD + + L + K + ILI+NK C Sbjct: 64 NPDSMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLGSFVRKYNKPAILIVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 122 ---EKAFDFDKEYYKLGF-DSMVAISAEHGTGLIDLYDEIIAKLP 162 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D + C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 171 IADPIKRDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIK 230 Query: 74 FLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S KL + ++IK A+ V L++D+ LK ++ + Sbjct: 231 LIDTAGLRKKSTITESLEKLSASDAINSIKFANTVILMIDALAPLKQQDLNIASHVVNEG 290 Query: 131 SRLILILNKIDCVK 144 +++++NK D VK Sbjct: 291 RSIVIVVNKWDLVK 304 >gi|89894997|ref|YP_518484.1| hypothetical protein DSY2251 [Desulfitobacterium hafniense Y51] gi|122482578|sp|Q24VA2|DER_DESHY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89334445|dbj|BAE84040.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 441 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--F 81 VA+VG N GKSTL NR G V+IV ++ TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYRDSEWLGRKFTIIDTGGIEFV 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 N M R + I+ AD++ V+D+ + D++ + +RS + +IL NK+ Sbjct: 65 NENTPITAQMRRQAEIAIEEADVIVFVIDAQISPTPD-DDMIAQTLRRSGKPVILAANKV 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L E + + + +SA G D+L+ + S P Sbjct: 124 ENFAKTELYEFYNLG-----LGEPVPISAVHGMNIGDLLDEVVSHFP 165 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/164 (21%), Positives = 78/164 (47%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+LVN +G + IV++ TTR + + + +DT G+ Sbjct: 179 IAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAIDSAFEHEGKHYIIIDTAGMRRKG 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + + S + +D++ +++D+ + + + ++L++NK D Sbjct: 239 RIEELTEQYSVSRSLRAVDRSDVILMLLDAGEGVTEQDKKIAGYAHEAGKGIVLVVNKWD 298 Query: 142 CV-KPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLN 180 + K ++ + + E I +L F++ T +SA G +L+ Sbjct: 299 LIEKDDKTMNRFEKDIREELGFMQYAPTLFISAKTGQRVTKLLD 342 >gi|292806636|gb|ADE42448.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G + +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGINALIDAILNALNL 168 >gi|195954217|gb|ACG58814.1| YphC [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDXLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNXNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERXYAFSSFG-----MPKSFNISVSHNRGISXLIDAILSXLBL 168 >gi|122700831|emb|CAL88004.1| GTPase [Helicobacter pylori] gi|122700869|emb|CAL88023.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|99905873|gb|ABF68631.1| YphC [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|91204852|ref|YP_537207.1| tRNA modification GTPase TrmE [Rickettsia bellii RML369-C] gi|122426138|sp|Q1RKJ6|MNME_RICBR RecName: Full=tRNA modification GTPase mnmE gi|91068396|gb|ABE04118.1| tRNA modification GTPase TrmE [Rickettsia bellii RML369-C] Length = 445 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 16/153 (10%) Query: 7 TFFNEHKDFVQDNS-----RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 T N +++ DN RSG +A++G NAGKS+L+N + ++IV++ TTR I Sbjct: 194 TLINTISEYLNDNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMRRDIAIVSNIAGTTRDI 253 Query: 61 VRGIVSEKESQIVFLDTPGIFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELK 116 + G + I+ DT GI + D + I+ + + K ADI ++ D+ + Sbjct: 254 IEGHLDIGGYPIILQDTAGIRGESNDVIEQEGIKRAIDSAKKADIKIVMFDAETLDSAVN 313 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLL 149 +I L+ E I+I+NKID + R+ Sbjct: 314 EDITGLIDE------NTIVIINKIDLIPENRIF 340 >gi|126175188|ref|YP_001051337.1| GTP-binding protein EngA [Shewanella baltica OS155] gi|166225854|sp|A3D6V5|DER_SHEB5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|125998393|gb|ABN62468.1| small GTP-binding protein [Shewanella baltica OS155] Length = 488 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NK+D + Sbjct: 64 EEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + AE + + + + + ++A++G G +++ Y + Sbjct: 124 DADSAC--AEFWS--LGLGEVYQMAASQGRGVTNMIEYALT 160 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR + + + + V +DT G+ + Sbjct: 201 LAIIGKPNVGKSTLTNRILGEERVVVFDEPGTTRDSIYIPMEREGREYVIIDTAGV-RRR 259 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+++ + S ++ A++V L++D+ + LL L++ +NK Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLIIDAREGIAEQDLGLLGFALNAGRALVIAVNKW 319 Query: 141 DCVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + +R+ ++E+ +L FI+ + +SA G G Sbjct: 320 DGIDQGIKDRV--KSELDRRLGFIDFARIHFISALHGTGV 357 >gi|317452823|emb|CBL87847.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAARMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER+ + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERVYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|256851670|ref|ZP_05557058.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN] gi|260661613|ref|ZP_05862525.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN] gi|256615628|gb|EEU20817.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN] gi|260547670|gb|EEX23648.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN] Length = 460 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N +IVT TTR + VS + + +DT G Sbjct: 221 RNGLATAIVGRPNVGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I+ AD+V L++++ L L+ + K R I++LNK Sbjct: 281 IHHTEDKVEKIGVERSKKAIEQADLVLLLLNASEALTTEDEKLI-DYTKNKKR-IVVLNK 338 Query: 140 ID 141 D Sbjct: 339 AD 340 >gi|212704371|ref|ZP_03312499.1| hypothetical protein DESPIG_02426 [Desulfovibrio piger ATCC 29098] gi|212672196|gb|EEB32679.1| hypothetical protein DESPIG_02426 [Desulfovibrio piger ATCC 29098] Length = 465 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 8/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L GA NAGKS+L+N +G ++VT TTR + + DT G+ Sbjct: 221 VVLAGAVNAGKSSLLNALLGRNRALVTDIPGTTRDFLEESCQLDGLPVRLTDTAGLRETD 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR------ELKVNIHDLLKEIAKRSSRL--ILI 136 +S ++ + LS ++ AD + L+VD R + + ++E+ +++ + +L+ Sbjct: 281 ESVEEMGVALSRQKVRQADAILLLVDGGRLGPAGAAADICPDEAVREVLEQAGDIPVLLV 340 Query: 137 LNKIDCVKP 145 NK+D +P Sbjct: 341 WNKVDLAEP 349 >gi|18075778|emb|CAD11317.1| GTP-binding protein homologue [Helicobacter pylori] Length = 347 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 20/200 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV---YS 194 NKID K + E+A A I K+F +S + G +++ + +TL L + Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGIPKSFNISVSHNRGISALIDAILNTLNLNQIIEQDLD 178 Query: 195 ADQISDLPMFHFTAEITREK 214 AD + L + E T+E+ Sbjct: 179 ADILESLETPNNALEETKEE 198 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|311105366|ref|YP_003978219.1| GTP-binding proten HflX [Achromobacter xylosoxidans A8] gi|310760055|gb|ADP15504.1| GTP-binding proten HflX [Achromobacter xylosoxidans A8] Length = 368 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 15/174 (8%) Query: 20 SRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +R G V+LVG TNAGKSTL N A T + R I E +V DT Sbjct: 185 ARGGALSVSLVGYTNAGKSTLFNALTRADSYAADQLFATLDTTTRRIWIEGAGSVVVSDT 244 Query: 78 PGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSS 131 G +D H L+ R + HAD++ VVD+ R+ ++ ++ +L EI S Sbjct: 245 VGFI--RDLPHGLIAAFRATLEETVHADLLLHVVDAASPQRDEQIFEVNKVLAEIGAASI 302 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 IL+ NKID E +E+ + I + F VSAT+ G D + + T Sbjct: 303 PTILVYNKIDLAGLEPRVER----DAHGTIARVF-VSATERAGLDALRGAIAET 351 >gi|90194094|gb|ABD92608.1| ThdF [Actinobacillus ureae ATCC 25976] Length = 436 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 6/127 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N G +IVT+ TTR ++ + + +DT G Sbjct: 203 REGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTRDVLCEHIHIDGMPLHIIDTAG 262 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKRSSRLIL 135 + A D ++ I+ +W I+ AD V L++DS + K D L ++ + + + Sbjct: 263 LREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP-VTV 321 Query: 136 ILNKIDC 142 I NK+D Sbjct: 322 IRNKVDL 328 >gi|109947730|ref|YP_664958.1| GTP-binding protein EngA [Helicobacter acinonychis str. Sheeba] gi|123362586|sp|Q17WL7|DER_HELAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|109714951|emb|CAJ99959.1| GTP-binding protein [Helicobacter acinonychis str. Sheeba] Length = 462 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + V TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLAKERIAITSDFVGTTRDINKRKITLNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD++ I+ + + +D++ VVD L +EI K + L++NKID Sbjct: 68 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 K ++ A + K+F +S + G +++ + L L Sbjct: 128 DKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILDALGLT 170 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + SIV+ TT + + K +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNVLTQKERSIVSSVAGTTIDPIDETILVKNQKICFVDTAGIRHKG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|19919696|gb|AAM08321.1| ERA-like protein 1 [Mus musculus] Length = 130 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 41/62 (66%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + +N R V L+GA NAGKSTL N+ +G KV V+ KV TTR G+++EKE+Q Sbjct: 69 HTPDMPENPRVLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQ 128 Query: 72 IV 73 +V Sbjct: 129 VV 130 >gi|52424789|ref|YP_087926.1| GTP-binding protein EngA [Mannheimia succiniciproducens MBEL55E] gi|52306841|gb|AAU37341.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 507 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR V + Q +DT G+ Sbjct: 221 IAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSVYIPMERDGQQYTIIDTAGVRKRG 280 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 S K + + I+ A++V L VD+ + LL I L++++NK D Sbjct: 281 KVHLSVEKFSVIKTLQAIQDANVVLLTVDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 340 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 341 GLSQYTKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVQEAYACAT 392 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 19/173 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I+ AD+V +VD+ L + + + +R +++ +++ NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTPADIGIAQYLRQRQNKITVVVANKTDG 124 Query: 143 VKPER------LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + + L EIA ++A++G G ++ + + PLA Sbjct: 125 IDADSHCAEFYQLGLGEIA----------QIAASQGRGVTQLMEDVLA--PLA 165 >gi|320534114|ref|ZP_08034655.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 171 str. F0337] gi|320133693|gb|EFW26100.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 171 str. F0337] Length = 734 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 4/178 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 299 VLAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVD 358 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + ++ AD V LVVD+ + +++ + + ++L NK+D Sbjct: 359 VAGLDAAVATQAEIAVEMADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKVDS- 417 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 P + + A + N + + + F VSA G G +VL+ + LP V +A DL Sbjct: 418 -PAQEGDAAALWN--LGLGEPFPVSALHGRGSGEVLDAVMEILPEVSAVAAAAPEGDL 472 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +ALVG N GKS+L+N G + +V TTR V I+ Q VF+DT GI Sbjct: 475 IALVGRPNVGKSSLLNSIAGRERVVVNETAGTTRDPVDEIIELDGRQWVFVDTAGIRRRV 534 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + I +A++ +++D+ + ++++ L+L+ N Sbjct: 535 KQSRGADYYAVLRTQ---GAIDNAEVAVVLLDASEPISEQDVRVVQQAVDAGRALVLVNN 591 Query: 139 KIDCVKPER 147 K D V ER Sbjct: 592 KWDLVDEER 600 >gi|260592851|ref|ZP_05858309.1| tRNA modification GTPase TrmE [Prevotella veroralis F0319] gi|260535221|gb|EEX17838.1| tRNA modification GTPase TrmE [Prevotella veroralis F0319] Length = 463 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 5/131 (3%) Query: 13 KDFVQDNS--RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 K F N+ R VA++G TN GKSTL+N + + +IV++ TTR ++ + Sbjct: 218 KSFETGNALKRGVPVAIIGKTNVGKSTLLNCLLHEEKAIVSNIHGTTRDVIEDTTEIQGI 277 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 F+DT G+ N D +L I S+ + A I+ VVD+ + D+ +S Sbjct: 278 TFRFIDTAGLRNTDDQVEQLGIERSYKKLAEARIILWVVDTPPRTS-ELSDMQARCEGKS 336 Query: 131 SRLILILNKID 141 LIL+ NK+D Sbjct: 337 --LILVRNKVD 345 >gi|297205279|ref|ZP_06922675.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16] gi|297149857|gb|EFH30154.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16] Length = 483 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N +IVT TTR + VS + + +DT G Sbjct: 244 RNGLATAIVGRPNVGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAG 303 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S I+ AD+V L++++ L L+ + K R I++LNK Sbjct: 304 IHHTEDKVEKIGVERSKKAIEQADLVLLLLNASEALTTEDEKLI-DYTKNKKR-IVVLNK 361 Query: 140 ID 141 D Sbjct: 362 AD 363 >gi|145628971|ref|ZP_01784770.1| GTP-binding protein EngA [Haemophilus influenzae 22.1-21] gi|144978474|gb|EDJ88197.1| GTP-binding protein EngA [Haemophilus influenzae 22.1-21] Length = 504 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRG 277 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 278 KVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD 337 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 338 GLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 1/124 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIVGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I ADIV +VD+ L + + +R +++ +++ NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 143 VKPE 146 + + Sbjct: 125 IDAD 128 >gi|122701693|emb|CAL88236.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLNL 168 >gi|251811361|ref|ZP_04825834.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis BCM-HMP0060] gi|282874718|ref|ZP_06283597.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135] gi|251805110|gb|EES57767.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis BCM-HMP0060] gi|281296434|gb|EFA88949.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135] Length = 459 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L + L + I ++ +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVI--KNEDVIVIINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + + E E+ + I+ + + K G D++ Sbjct: 337 TDLEQRLDVSELREMIGDMPLIQTSML----KQEGIDEL 371 >gi|225572013|ref|ZP_03780877.1| hypothetical protein RUMHYD_00307 [Blautia hydrogenotrophica DSM 10507] gi|225040546|gb|EEG50792.1| hypothetical protein RUMHYD_00307 [Blautia hydrogenotrophica DSM 10507] Length = 441 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G +SIV TR + V+ + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNVLAGENISIVKDTPGVTRDRIYAEVTWLDKSFTMIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + D M + I AD++ +VD R+ V+ + ++ +RS++ ++L++NK+D Sbjct: 65 SNDIILSQMREQAQIAIDTADVIVFLVDV-RQGMVDADAKVADMLRRSTKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + +++ E N + I + VSA+ G D+L+ + P Sbjct: 124 SFE-KFMMDVYEFYN--LGIGEPIPVSASSRLGLGDMLDEIVKHFP 166 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+L+N+ VG + IV+ TTR + V + + VF+DT G+ Sbjct: 180 IAVVGKPNVGKSSLINKLVGEERVIVSDIAGTTRDAIDTKVKWQGREYVFIDTAGLRRKG 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + + ++ A++V +++D + + ++ +I+ +NK D Sbjct: 240 KIKEEIERYSVIRTVTAVERANVVVIMIDGVEGVTEQDAKIAGIAHEKGKGVIIAVNKWD 299 Query: 142 CVK 144 V+ Sbjct: 300 AVE 302 >gi|122702617|emb|CAL88498.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNSNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KDRAYAFSSFGMPKSFNISVSHNRGISALIDAILNALNL 168 >gi|189347846|ref|YP_001944375.1| tRNA modification GTPase TrmE [Chlorobium limicola DSM 245] gi|189341993|gb|ACD91396.1| tRNA modification GTPase TrmE [Chlorobium limicola DSM 245] Length = 473 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 9/162 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKSTL+N +G + +IV+H TTR + +++ DT G+ A + Sbjct: 235 IVGKPNAGKSTLLNTLLGEERAIVSHMPGTTRDYIEECFVHEKTMFRLTDTAGLREAAEE 294 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDCV- 143 + + S+ I AD++ ++D + + ++++E + ++LI+I NK D Sbjct: 295 IEREGVGRSYKKIGEADLILYMLDLSQPESLKESEVIREFRETYTHAKLIVIANKTDLAS 354 Query: 144 -KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 ERL + E V +SA +G G D +L + S Sbjct: 355 DSEERLQQLREETGCDV-----AGISAKQGEGIDGLLRLMSS 391 >gi|329724170|gb|EGG60688.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU144] Length = 459 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L + L + I ++ +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVI--KNEDVIVIINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + + E E+ + I+ + + K G D++ Sbjct: 337 TDLEQRLDVSELREMIGDMPLIQTSML----KQEGIDEL 371 >gi|254302562|ref|ZP_04969920.1| possible GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322754|gb|EDK88004.1| possible GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 440 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 70/134 (52%), Gaps = 3/134 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 DF +++ +A++G NAGKS+LVN+ G + +IV+ TTR + ++ K+++ + Sbjct: 168 DFPEEDEEVLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYM 227 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT GI ++S + + IK AD+ L++D+ L + + Sbjct: 228 IIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAHEEL 287 Query: 131 SRLILILNKIDCVK 144 +I+++NK D ++ Sbjct: 288 KPIIIVMNKWDLIE 301 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N VG K++IV TR + S+ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 + + LM ++ + + AD++ VVD K ++ L EIA K++ +IL + Sbjct: 65 NDF--LMAKIKEQAEVAMNEADVILFVVDG----KSGLNPLDDEIAYILRKKNKPVILCV 118 Query: 138 NKID 141 NKID Sbjct: 119 NKID 122 >gi|122702157|emb|CAL88269.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSVLDL 168 >gi|122700591|emb|CAL87884.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + EQA A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEK---EQA-YAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|157826422|ref|YP_001495486.1| tRNA modification GTPase TrmE [Rickettsia bellii OSU 85-389] gi|166234815|sp|A8GUF3|MNME_RICB8 RecName: Full=tRNA modification GTPase mnmE gi|157801726|gb|ABV78449.1| tRNA modification GTPase TrmE [Rickettsia bellii OSU 85-389] Length = 445 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 16/153 (10%) Query: 7 TFFNEHKDFVQDNS-----RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 T N +++ DN RSG +A++G NAGKS+L+N + ++IV++ TTR I Sbjct: 194 TLINTISEYLNDNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMRRDIAIVSNIAGTTRDI 253 Query: 61 VRGIVSEKESQIVFLDTPGIFN-AKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELK 116 + G + I+ DT GI + D + I+ + + K ADI ++ D+ + Sbjct: 254 IEGHLDIGGYPIILQDTAGIRGESNDVIEQEGIKRAIDSAKKADIKIVMFDAETLDSAVN 313 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLL 149 +I L+ E I+I+NKID + R+ Sbjct: 314 EDITGLIDE------NTIVIINKIDLIPENRIF 340 >gi|323694902|ref|ZP_08109052.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673] gi|323500992|gb|EGB16904.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673] Length = 462 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 7/150 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG + +IVT TTR + + + +DT GI +D Sbjct: 230 ILGKPNAGKSSLMNVLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDV 289 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + + + AD++ VVD L N + ++ I R S I++LNK D E Sbjct: 290 VEKIGVDKARANADDADLLIYVVDGSCPLDENDYQIMNLIEGRKS--IVLLNKTDL---E 344 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI K ++ VSA + G D Sbjct: 345 MVLTPEEIKEKTG--KEVVAVSAKEQRGID 372 >gi|302386875|ref|YP_003822697.1| GTP-binding proten HflX [Clostridium saccharolyticum WM1] gi|302197503|gb|ADL05074.1| GTP-binding proten HflX [Clostridium saccharolyticum WM1] Length = 423 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 20/196 (10%) Query: 1 MEMGEITFFNEHKDFVQ---DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT 57 M E+ H++ V+ D + A+VG TNAGKSTL+NR A + T Sbjct: 177 MLKAELEDVKRHREVVRQQRDKNHVPAAAIVGYTNAGKSTLLNRLTDAGILAEDKLFATL 236 Query: 58 RSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI---KHADIVCLVVD-SHR 113 R + QI+ DT G F K +H +I ST+ K++DI+ VVD S+ Sbjct: 237 DPTTRNLSLPGGQQILLTDTVG-FIRKLPHH--LIEAFKSTLEEAKYSDIILHVVDCSNP 293 Query: 114 ELKVN---IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 ++ + +++ L+E+ +I + NKID +L V + +SA Sbjct: 294 QMDMQMYVVYETLRELGICDKIMITVFNKIDAADAGVILRD-------VSSDHQVRISAK 346 Query: 171 KGHGCDDVLNYLCSTL 186 G G D+++N L + L Sbjct: 347 TGEGLDELINLLETIL 362 >gi|288556077|ref|YP_003428012.1| GTP-binding protein Der [Bacillus pseudofirmus OF4] gi|288547237|gb|ADC51120.1| GTP-binding protein EngA [Bacillus pseudofirmus OF4] Length = 437 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +V+IV TR + + + +DT GI A Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVAIVEDMPGVTRDRLYSHGEWLDREFNLIDTGGIELA 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M + I+ AD++ +V+ + ++ K + + ++L +NK+D Sbjct: 65 DEPLLNQMREQAELAIEEADVIVFIVNGREGITSADQEVAKILFRSKKPVVLGVNKVDNP 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 LL + + I F +S + G G D+L+ + P Sbjct: 125 DMHDLLYEF----YSLGIGNPFPISGSHGLGLGDLLDEVLKHFP 164 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D+ D R ++L+G N GKS+LVN +G + IV++ TTR + + V Sbjct: 170 DYDPDTIR---ISLIGRPNVGKSSLVNAMLGEERVIVSNIPGTTRDAIDTSFTRDGQDYV 226 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S K + S I+ +++V +V+++ + + + Sbjct: 227 LIDTAGMRKRGKVYESTEKYSVLRSLKAIERSNVVLVVINAEEGIIEQDKKIAGYAHEAG 286 Query: 131 SRLILILNKIDCVK 144 +I+++NK D ++ Sbjct: 287 RAVIIVVNKWDAIE 300 >gi|122701683|emb|CAL88231.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G ++N + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALINAVLNALNL 168 >gi|90407601|ref|ZP_01215782.1| GTP-binding protein HflX [Psychromonas sp. CNPT3] gi|90311304|gb|EAS39408.1| GTP-binding protein HflX [Psychromonas sp. CNPT3] Length = 449 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 15/142 (10%) Query: 21 RSG-----CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 RSG CVALVG TNAGKS+L+ ++V + T + VR + + +I+ Sbjct: 219 RSGRVEQQCVALVGYTNAGKSSLMRALTDSEVLVEDKLFATLDTTVRTLQPPTQPRILIS 278 Query: 76 DTPGIFNAKDSYHKLMIRL--SWSTIKHADIVCLVVDSH-----RELKVNIHDLLKEIAK 128 DT G K H L+ + K A ++ VVD+ +L V H +L E+ Sbjct: 279 DTVGFI--KKLPHDLVASFHSTLEEAKDAALLLYVVDASDVNFKSQLAVVDH-VLGELNV 335 Query: 129 RSSRLILILNKIDCVKPERLLE 150 S IL+LNK+DC+ ER LE Sbjct: 336 DLSNKILLLNKVDCISEERQLE 357 >gi|152975027|ref|YP_001374544.1| GTP-binding protein EngA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189037136|sp|A7GN41|DER_BACCN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152023779|gb|ABS21549.1| small GTP-binding protein [Bacillus cytotoxicus NVH 391-98] Length = 436 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE E + L F E F +S T G G D+L+ + P Sbjct: 123 NPEMRNEIYDFY-ALGFGEP-FPISGTHGLGLGDLLDEVAQHFP 164 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 5/122 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G N GKS+LVN +G + IV++ TTR V ++ V +DT G+ Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYTKDGQDYVIIDTAGMRKKGKV 239 Query: 87 Y---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 Y K + + I+ +D+V +V+D + + + A S R +++++NK D Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVVIVVNKWDA 298 Query: 143 VK 144 VK Sbjct: 299 VK 300 >gi|251792908|ref|YP_003007634.1| GTP-binding protein EngA [Aggregatibacter aphrophilus NJ8700] gi|247534301|gb|ACS97547.1| GTP-binding protein EngA [Aggregatibacter aphrophilus NJ8700] Length = 509 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 223 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRG 282 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 283 KVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD 342 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++E+ +L FI+ + +SA G G ++ Y C+T Sbjct: 343 GLNQEVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFESVKEAYECAT 394 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 21/172 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I+ ADIV +VD+ L + I + L++ +++ +++ NK+ Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQ--RQNKTTVVVANKV 122 Query: 141 DCVKPER------LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D + + L EIA ++A++G G +++ + S L Sbjct: 123 DGIDADSHCAEFYQLGLGEIA----------QIAASQGRGIANLMEQVLSPL 164 >gi|197302262|ref|ZP_03167321.1| hypothetical protein RUMLAC_00989 [Ruminococcus lactaris ATCC 29176] gi|197298693|gb|EDY33234.1| hypothetical protein RUMLAC_00989 [Ruminococcus lactaris ATCC 29176] Length = 477 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N G + +IVT TTR ++ + + + +DT GI +D Sbjct: 223 IVGKPNAGKSSLLNLLAGHERAIVTDIAGTTRDVLEEQIRLQGLNLNVIDTAGIRQTEDL 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + + AD++ VVD+ ++L N +++ I + + I++LNK D Sbjct: 283 VEKMGVDKAKEYAQKADLIIYVVDASKKLDENDEKIMELIYDK--KAIILLNKSDL 336 >gi|209883759|ref|YP_002287616.1| GTP-binding protein Obg/CgtA [Oligotropha carboxidovorans OM5] gi|261277651|sp|B6JD21|OBG_OLICO RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|209871955|gb|ACI91751.1| GTP-binding protein Obg/CgtA [Oligotropha carboxidovorans OM5] Length = 356 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 77/179 (43%), Gaps = 23/179 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 LVG NAGKST ++ AK I + T + G+V + V D PG+ Sbjct: 162 AGLVGLPNAGKSTFLSVVSAAKPKIADYPFTTLHPQL-GVVRSDGREFVLADIPGLIEGA 220 Query: 84 ------KDSY--H----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 D + H ++++ L +T +HA +V EL HDL ++ Sbjct: 221 HEGTGLGDRFLGHVERCRVLLHLVDATCEHAGKAYKIV--RNELAAYEHDLTDKVE---- 274 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 I+ LNKID V PE+L EQ + K + +VS G G +VL L + AP Sbjct: 275 --IVALNKIDAVTPEQLKEQ-KARLKRAAKQTPMLVSGVTGEGVPEVLRALTDVISEAP 330 >gi|163732963|ref|ZP_02140407.1| tRNA modification GTPase TrmE [Roseobacter litoralis Och 149] gi|161393498|gb|EDQ17823.1| tRNA modification GTPase TrmE [Roseobacter litoralis Och 149] Length = 428 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 16 VQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 V + RSG VALVGA NAGKSTL+N+ G +I + TTR ++ + + F Sbjct: 206 VAERIRSGFEVALVGAPNAGKSTLLNKLSGRDAAITSEIAGTTRDVIEVRMDLGGLPVTF 265 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 LDT G+ + D K+ I + + + AD+ Sbjct: 266 LDTAGLRQSTDEIEKIGIERAIARARDADL 295 >gi|122700737|emb|CAL87957.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|319399917|gb|EFV88163.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis FRI909] Length = 459 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L + L + I ++ +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVI--KNEDVIVIINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + + E E+ + I+ + + K G D++ Sbjct: 337 TDLEQRLDVSELREMIGDMPLIQTSML----KQEGIDEL 371 >gi|302306610|ref|NP_983009.3| ABR063Cp [Ashbya gossypii ATCC 10895] gi|299788599|gb|AAS50833.3| ABR063Cp [Ashbya gossypii ATCC 10895] Length = 493 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 110/244 (45%), Gaps = 19/244 (7%) Query: 11 EHKDFVQDNSRSGCV------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E DFV+ +RS + +++GA NAGKS+LVN SIV+ TTR + Sbjct: 229 EVADFVERVTRSTILQSGIRLSVLGAPNAGKSSLVNCITKDDTSIVSSIPGTTRDAIDVP 288 Query: 65 VSEKESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVD--SHRELKVNIHD 121 + +++ DT G+ ++ D + I + +DIV LVVD + L + Sbjct: 289 LDINGYKVILTDTAGVRAHSTDPIELIGIARAQERTARSDIVLLVVDATAATPLSPALRS 348 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 L+++ + RL++I NK D V P RL Q ++A +L ++S + G D +++ Sbjct: 349 HLRDLTDK-CRLVVI-NKSDLVPPSRLKYIQTQLAAELPDCGPALVISCKQRDGLDALVH 406 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSC----VVTEKWEE 236 L S +AD I+ + +I R+ + L + +S V +E Sbjct: 407 ALTSHFTDLASCAAADPIA---ISARARDILRQDVLAGLDGFLRLASSAEVDVASESLRS 463 Query: 237 KKDG 240 DG Sbjct: 464 AADG 467 >gi|206896387|ref|YP_002246902.1| Spo0B-associated GTP-binding protein [Coprothermobacter proteolyticus DSM 5265] gi|261266745|sp|B5Y805|OBG_COPPD RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|206739004|gb|ACI18082.1| Spo0B-associated GTP-binding protein [Coprothermobacter proteolyticus DSM 5265] Length = 419 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 15/168 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG NAGKS+L++ AK I + TTRS V GIV + E V D PG+ Sbjct: 161 VGLVGLPNAGKSSLISVISKAKPEIAPYPF-TTRSPVLGIVKKAEQSFVVSDVPGLIEGA 219 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRL-----IL 135 L + ++ ++ +V+D+ E ++ E+ + L +L Sbjct: 220 HEGKGLGLTF-LRHVERTKVLAIVIDAAAIDGYEPMQAYETIIGELRAYNPNLLEKPRVL 278 Query: 136 ILNKIDCVKPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +LNKID ++PE + + + + A+K + + SA G G + +++ L Sbjct: 279 VLNKIDLLQPEHIDQLKVQFADKESHV---VLTSAATGEGTNQLVDVL 323 >gi|239828707|ref|YP_002951331.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70] gi|239809000|gb|ACS26065.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70] Length = 461 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 221 REGLATVIIGRPNVGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ H L L + + + I+I+NK Sbjct: 281 IRETEDVVERIGVERSRQMLKEADLILLVLNYHEPLTEEDEKLFEMV--KGMDFIVIVNK 338 Query: 140 IDCVK 144 D K Sbjct: 339 TDLPK 343 >gi|122701375|emb|CAL88077.1| GTPase [Helicobacter pylori] gi|122701413|emb|CAL88096.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|91792618|ref|YP_562269.1| GTP-binding protein EngA [Shewanella denitrificans OS217] gi|122968866|sp|Q12PT0|DER_SHEDO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91714620|gb|ABE54546.1| Small GTP-binding protein domain [Shewanella denitrificans OS217] Length = 491 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NK+D + Sbjct: 64 EEGIETKMAEQSLAAIEEADVVLFLTDARAGLTSADLAIAQHLRSRDKTTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 + + + + + + + ++A +G G +++ Y LAP+ Sbjct: 124 DADSVCGEFWA----LGLGEVYQMAAAQGRGVTNMIEY-----ALAPYA 163 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL+NR +G + +V TTR + + + + V +DT G+ + Sbjct: 202 LAIIGKPNVGKSTLINRILGEERVVVYDAPGTTRDSIYIPMEREGREYVLIDTAGV-RRR 260 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK- 139 H+++ + S ++ A++V LVVD+ + LL L++ +NK Sbjct: 261 SKVHEVIEKFSVIKTLKAVEDANVVLLVVDAREGIAEQDLGLLGFTLNAGRALVIAVNKW 320 Query: 140 --IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 ID +R+ ++E+ +L FI+ K +SA G G Sbjct: 321 DGIDQTVKDRV--KSELDRRLGFIDFAKIHFISALHGTGV 358 >gi|70733512|ref|YP_263287.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf-5] gi|123651832|sp|Q4K396|MNME_PSEF5 RecName: Full=tRNA modification GTPase mnmE gi|68347811|gb|AAY95417.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf-5] Length = 456 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR I+R + + +DT G+ + + Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTE 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ + + I AD V LVVD+ + L E ++ +++ LI NK D Sbjct: 279 DQVEKIGVERALKAISEADRVLLVVDATAAEAADPFALWPEFLEQRPDPAKVTLIRNKAD 338 >gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37] gi|1351237|sp|P47254|MNME_MYCGE RecName: Full=tRNA modification GTPase mnmE gi|1045676|gb|AAC71224.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37] gi|166078782|gb|ABY79400.1| tRNA modification GTPase TrmE [synthetic Mycoplasma genitalium JCVI-1.0] Length = 442 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G TN GKS+L+N + +IV++ +TR +V G + I LDT GI K Sbjct: 220 IAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHK 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 K I+ S+ +IK A++V ++D+ Sbjct: 280 SGLEKAGIKKSFESIKQANLVIYLLDA 306 >gi|264679417|ref|YP_003279324.1| ferrous iron transporter B [Comamonas testosteroni CNB-2] gi|262209930|gb|ACY34028.1| ferrous iron transport protein B [Comamonas testosteroni CNB-2] Length = 387 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 16/171 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL N V A+ T + R + ++E E + DT G Sbjct: 191 ISLVGYTNAGKSTLFNAMVKARAYAADQLFATLDTTTRQMYLAEAEESVSLSDTVGFI-- 248 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILIL 137 +D H L+ + + AD++ VVD+ E + +L EI IL+ Sbjct: 249 RDLPHGLVDAFQATLQEAIDADLLLHVVDASNPGFPEQIQQVQKVLGEIGADDVPQILVF 308 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKT----FMVSATKGHGCDDVLNYLCS 184 NK+D ++PER Q + + ++ T VSA G G + L Sbjct: 309 NKLDAIEPER---QPALLQDMYELDGTPVPRVFVSARSGRGLAQLRQMLAD 356 >gi|145579207|pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 gi|145579208|pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 1/125 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L NR + + ++V TR + G+V + + +DT G+++ Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG- 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + K + ++ A++V VD EL +++ + + ++ +IL+ K+D K Sbjct: 63 DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 Query: 145 PERLL 149 E L Sbjct: 123 HELYL 127 >gi|17227979|ref|NP_484527.1| GTP-binding protein EngA [Nostoc sp. PCC 7120] gi|26006724|sp|Q8YZH7|DER_NOSS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|17129828|dbj|BAB72441.1| GTP binding protein [Nostoc sp. PCC 7120] Length = 453 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPG-IF 81 VA++G N GKSTLVNR G + +IV + T R+ + S++E Q+V DT G +F Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYLPAYWSDREFQVV--DTGGLVF 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N + L+ + + + + A VV+ ++ + + ++ + L +NK Sbjct: 64 NDDTEFLPLIRQQALAALHEASAAIFVVNGQTGPNSADEEIAEWLRQQPVPVFLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C P++ QA +L E + +SA G+G ++L+ L LP Sbjct: 122 CESPDQGSIQASEFWELGLGEP-YPISAIHGNGTGELLDELIKHLP 166 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N F G + IV+ TTR + + +DT GI K Sbjct: 179 IAIIGRPNVGKSSLLNAFAGEERVIVSPISGTTRDAIDTFIERDGQNYRLIDTAGIRKKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I ++ I+ AD+V LV+D+ + L I ++++NK D Sbjct: 239 SIDYGTEFFSINRAFKAIRRADVVLLVIDALDGVTEQDQKLAGRILDEGKACVVVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V+ + + + +L F E T VSA G + +L Sbjct: 299 AVEKDSYTIYDYEKNLEARLHFTEWADTIYVSAVTGQRVEKIL 341 >gi|325266568|ref|ZP_08133245.1| GTP-binding protein HflX [Kingella denitrificans ATCC 33394] gi|324982011|gb|EGC17646.1| GTP-binding protein HflX [Kingella denitrificans ATCC 33394] Length = 380 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 10/191 (5%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 ++ ++ E + + + R A+VG TNAGKSTL NR A V T + Sbjct: 192 QLAQVKKQRETRRKARQSGRMKTFAIVGYTNAGKSTLFNRLTKADVLAKDQLFATLDTTA 251 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWS--TIKHADIVCLVVDS----HREL 115 R + E I+ DT G ++ HKL+ S + AD++ VVD+ H Sbjct: 252 RKLYLAPEHSIILTDTVGFV--QNLPHKLVAAFSATLEETALADVLLHVVDAADPEHERK 309 Query: 116 KVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 +++++L EI IL+ NKID + PE + N I +SAT+ G Sbjct: 310 IEDVNNVLAEIHADHLPQILLYNKIDLL-PEAEQNAGCLRNHNGQI-TAVRLSATQAQGL 367 Query: 176 DDVLNYLCSTL 186 DD+ L TL Sbjct: 368 DDLRQALLETL 378 >gi|315652318|ref|ZP_07905310.1| GTP-binding protein [Eubacterium saburreum DSM 3986] gi|315485441|gb|EFU75831.1| GTP-binding protein [Eubacterium saburreum DSM 3986] Length = 408 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPG 79 R+G +A+ G N GKS+L+N ++IV+ TT V+ + +V +DTPG Sbjct: 22 RAG-IAIFGCCNVGKSSLINAITSQDIAIVSDISGTTTDPVKKSMELLPFGPVVIIDTPG 80 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + K + L + S I AD++ VVD+ E + + L +I R +++ NK Sbjct: 81 L-DDKSTLGALRVEKSLEYINQADLILFVVDASNETSPDEIEFLDKIKSNEKRYLVVGNK 139 Query: 140 IDC 142 DC Sbjct: 140 SDC 142 >gi|291539801|emb|CBL12912.1| tRNA modification GTPase trmE [Roseburia intestinalis XB6B4] Length = 457 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG + +IVT TTR ++ ++ + +DT GI D Sbjct: 225 IIGKPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDV 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + + AD+ VVD+ +L N ++++ + R + I++LNK D Sbjct: 285 VEKIGVDRAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDR--KAIVLLNKSDL 338 >gi|255527592|ref|ZP_05394456.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] gi|296186790|ref|ZP_06855191.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] gi|255508725|gb|EET85101.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] gi|296048504|gb|EFG87937.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] Length = 459 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 11/152 (7%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N + K +IVT TTR ++ ++ + +DT GI D Sbjct: 228 IVGKPNVGKSSLLNSLLREKRAIVTEIPGTTRDVIEEYINIDGVPVKIVDTAGIRETNDF 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + S I AD++ L++D REL +++ I + + I++LNK D Sbjct: 288 VEKIGVEKSKEKINEADLIILMLDLSRELDNEDREIIDYI--KDKKYIILLNKSDLGGK- 344 Query: 147 RLLEQAEIANKLVFIEKTFMV--SATKGHGCD 176 + + +I N + ++V SA G G D Sbjct: 345 --INKEDIKN----LNSNYIVETSAKTGEGLD 370 >gi|75909106|ref|YP_323402.1| GTP-binding protein EngA [Anabaena variabilis ATCC 29413] gi|123609166|sp|Q3M929|DER_ANAVT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|75702831|gb|ABA22507.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC 29413] Length = 453 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPG-IF 81 VA++G N GKSTLVNR G + +IV + T R+ + S++E Q+V DT G +F Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYLPAYWSDREFQVV--DTGGLVF 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N + L+ + + + + A VV+ ++ + + ++ + L +NK Sbjct: 64 NDDTEFLPLIRQQALAALHEASAAIFVVNGQTGPNSADEEIAEWLRQQPVPVFLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C P++ QA +L E + +SA G+G ++L+ L LP Sbjct: 122 CESPDQGSIQASEFWELGLGEP-YPISAIHGNGTGELLDELIKHLP 166 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N F G + IV+ TTR + + +DT GI K Sbjct: 179 IAIIGRPNVGKSSLLNAFAGEERVIVSPISGTTRDAIDTFIERNGQNYRLIDTAGIRKKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I ++ I+ AD+V LV+D+ + L I ++++NK D Sbjct: 239 SIDYGTEFFSINRAFKAIRRADVVLLVIDALDGVTEQDQKLAGRILDEGKACVVVVNKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V+ + + + +L F E T VSA G + +L Sbjct: 299 AVEKDSYTIYDYEKNLEARLHFTEWADTIYVSAVTGQRVEKIL 341 >gi|330505868|ref|YP_004382737.1| tRNA modification GTPase TrmE [Pseudomonas mendocina NK-01] gi|328920154|gb|AEB60985.1| tRNA modification GTPase TrmE [Pseudomonas mendocina NK-01] Length = 455 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 D ++ + + I AD V LVVDS + L E ++ +R+ LI NK Sbjct: 278 DDHVERIGVERALKAISEADRVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|261495041|ref|ZP_05991508.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309283|gb|EEY10519.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] Length = 504 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 218 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 277 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 278 KVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 337 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 338 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 389 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 53/119 (44%) Query: 28 VGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSY 87 +G N GKSTL NR + ++V TR G + + +DT GI ++ Sbjct: 1 MGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTEEGV 60 Query: 88 HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + M S I+ AD+V +VD+ L + + + +R +++ NK D + + Sbjct: 61 EEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANKTDGIDAD 119 >gi|242372605|ref|ZP_04818179.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W1] gi|242349660|gb|EES41261.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W1] Length = 459 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L + L + I ++ +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLYEVI--KNEDVIVIINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + + E E+ + I+ + + K G D++ Sbjct: 337 TDLEQRLDMNEVKEMIGDMPLIQTSML----KQEGIDEL 371 >gi|122702633|emb|CAL88506.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGVSTLIDAILSALNL 168 >gi|91070353|gb|ABE11270.1| GTP-binding protein [uncultured Prochlorococcus marinus clone HF10-88F10] Length = 457 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +QD+ ++++G N GKS+L+N G K +IV+ TT + ++ + ++ + Sbjct: 170 IQDDEEKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKII 229 Query: 76 DTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI N K I ++ +I +D+ LV+D+ + L I ++ Sbjct: 230 DTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQDQKLAGRIEEQGRA 289 Query: 133 LILILNKIDCV-KPERLLEQA--EIANKLVFI--EKTFMVSATKGHGCDDVLNY 181 I+++NK D V K + Q E+ +KL F+ K +SA G D++ + Sbjct: 290 CIIVVNKWDIVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQRVDNIFEH 343 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR + +IV K TR S + +DT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 84 KDSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS IR + ++ A + LVVD ++ + + K + S + I+ +NK C Sbjct: 65 DDSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + A KL E VSA G G D+L+ + LP Sbjct: 123 ESTNLGISLASEFWKLGLGEPN-PVSAIHGSGTGDLLDLVIGELP 166 >gi|122701365|emb|CAL88072.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122700675|emb|CAL87926.1| GTPase [Helicobacter pylori] gi|122701503|emb|CAL88141.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|120436262|ref|YP_861948.1| tRNA modification GTPase TrmE [Gramella forsetii KT0803] gi|205829153|sp|A0M2N6|MNME_GRAFK RecName: Full=tRNA modification GTPase mnmE gi|117578412|emb|CAL66881.1| tRNA modification GTPase [Gramella forsetii KT0803] Length = 474 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 9/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + +S F+DT GI K Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSEIAGTTRDTIEDEMSIGGVGFRFIDTAGIRETK 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK---EIAKRSSR-----LILI 136 D + I+ ++ I A +V +VDS ++ VN L + EI K ++ L++I Sbjct: 284 DVVESIGIKKTFEKISQAQVVVYLVDSS-QIAVNRERLQQVRIEIEKIKNKFPQKPLLII 342 Query: 137 LNKIDCVKPERL 148 NK D + E + Sbjct: 343 ANKTDRLADEEI 354 >gi|108799893|ref|YP_640090.1| GTP-binding protein EngA [Mycobacterium sp. MCS] gi|119869003|ref|YP_938955.1| GTP-binding protein EngA [Mycobacterium sp. KMS] gi|126435521|ref|YP_001071212.1| GTP-binding protein EngA [Mycobacterium sp. JLS] gi|108770312|gb|ABG09034.1| Small GTP-binding protein domain protein [Mycobacterium sp. MCS] gi|119695092|gb|ABL92165.1| small GTP-binding protein [Mycobacterium sp. KMS] gi|126235321|gb|ABN98721.1| small GTP-binding protein [Mycobacterium sp. JLS] Length = 471 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V + + V DT G Sbjct: 36 VVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDATWSGRRFVVQDTGGWEPD 95 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L+ + ++ AD + LVVD+ + + K + L NK+D Sbjct: 96 AKGLQQLVADQATVAMRTADAIILVVDAVVGATAADEAAARMLRKSGKPVFLAANKVDTE 155 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + A + + + I + VSA G G D+L+++ LP Sbjct: 156 RGE--ADAAALWS--LGIGQPHSVSAIHGRGVADLLDHVLEKLP 195 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+NR G + S+V TT V ++ F+DT G+ Sbjct: 210 VALVGKPNVGKSSLLNRLAGDERSVVHDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRKV 269 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + I A++V +++D+ + L +L + + L+L NK D Sbjct: 270 GQASGHEFYASVRTHGAIDAAEVVLVLIDASQPLTEQDQRVLSMVIEAGRALVLAFNKWD 329 Query: 142 CVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 V +R LL++ EI +L ++ +SA G ++ L + L Sbjct: 330 LVDEDRRYLLDR-EIDRELAQVQWAPRVNISAMTGRAVQKLVPALETAL 377 >gi|332533705|ref|ZP_08409564.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas haloplanktis ANT/505] gi|332036869|gb|EGI73330.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas haloplanktis ANT/505] Length = 454 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESP 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I AD V ++D + + H + E + + +I NK D Sbjct: 279 DRVEQIGIERAWDEINQADRVLFMLDGTDTIDTDPHKIWPEFMAKLPEGMGVTVIRNKAD 338 >gi|292806466|gb|ADE42363.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|240145748|ref|ZP_04744349.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82] gi|257202164|gb|EEV00449.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82] Length = 457 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG + +IVT TTR ++ ++ + +DT GI D Sbjct: 225 IIGKPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDV 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + + AD+ VVD+ +L N ++++ + R + I++LNK D Sbjct: 285 VEKIGVDRAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDR--KAIVLLNKSDL 338 >gi|148380476|ref|YP_001255017.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932865|ref|YP_001384700.1| GTP-binding protein EngA [Clostridium botulinum A str. ATCC 19397] gi|153936714|ref|YP_001388221.1| GTP-binding protein EngA [Clostridium botulinum A str. Hall] gi|166224327|sp|A7FW89|DER_CLOB1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224328|sp|A5I4V0|DER_CLOBH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148289960|emb|CAL84073.1| putative GTP-binding protein EngA [Clostridium botulinum A str. ATCC 3502] gi|152928909|gb|ABS34409.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932628|gb|ABS38127.1| ribosome-associated GTPase EngA [Clostridium botulinum A str. Hall] Length = 439 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G ++SIV TR + + +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M R + I+ A+++ +VD L ++ + + K ++L++NKID + Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADKEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +S+++ G D+L+ Sbjct: 126 KDEN--NAYEFYN--LGIGDPVTISSSQALGLGDMLD 158 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/176 (22%), Positives = 86/176 (48%), Gaps = 9/176 (5%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 + +F + + +D+ R +A +G N GKS+L+N+ +G + IV+ TTR + V Sbjct: 161 VEYFKDDESAGEDDERIN-IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYV 219 Query: 66 SEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + +DT G+ K+ + + ++++I+ AD+ L++D+ + + Sbjct: 220 DTDFGEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKI 279 Query: 123 LKEIAKRSSRLILILNKIDCV-KPERLLE--QAEIANKLVFI--EKTFMVSATKGH 173 + + +++I+NK D V K ++ ++ + E+ L F+ K +SA G Sbjct: 280 IGYAHDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQ 335 >gi|27469335|ref|NP_765972.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis ATCC 12228] gi|57865942|ref|YP_187603.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A] gi|293367584|ref|ZP_06614237.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W2(grey)] gi|32171815|sp|Q8CMN5|MNME_STAES RecName: Full=tRNA modification GTPase mnmE gi|81675521|sp|Q5HS36|MNME_STAEQ RecName: Full=tRNA modification GTPase mnmE gi|27316885|gb|AAO06060.1|AE016752_93 putative thiophene and furan oxidation protein [Staphylococcus epidermidis ATCC 12228] gi|57636600|gb|AAW53388.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A] gi|291318297|gb|EFE58690.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W2(grey)] gi|329735775|gb|EGG72056.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU028] Length = 459 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L + L + I ++ +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVI--KNEDVIVIINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + + E E+ + I+ + + K G D++ Sbjct: 337 TDLEQRLDVSELREMIGDMPLIQTSML----KQEGIDEL 371 >gi|291543008|emb|CBL16118.1| ribosome-associated GTPase EngA [Ruminococcus bromii L2-63] Length = 440 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 4/163 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL N+ +G ++SIV TR + G V +DT GI Sbjct: 6 IAVVGRPNVGKSTLFNKLIGQRLSIVDDTPGVTRDRIYGEVEWCGKTAFIVDTGGIEPKS 65 Query: 85 DSYHKL-MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + M R + I A+++ LV D + D+ + + K ++L +NK D + Sbjct: 66 DDIILVQMRRQAQLAIDTANVIILVTDCKSGMVATDMDVAQMLQKSGKPVVLCVNKCDTL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E E E N + + VSA G+G D+L+ S+ Sbjct: 126 G-EPSPEFYEFYN--LGLGDPIEVSAVHGYGTGDLLDKAFSSF 165 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 18/173 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKS+LVN+ + IV+ TTR + +V K + F DT G+ Sbjct: 180 VAVIGKPNAGKSSLVNKITNEERCIVSDIAGTTRDTIDTLVENKYGKFNFTDTAGLRRQS 239 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 D+ K I + I+ +D+ +++D+ E + L E + I+ +N Sbjct: 240 KIYDNIEKYSIIRAKMAIERSDVCVIMIDATEGVTEQDTKVAGLAHEAGR---ACIIAVN 296 Query: 139 KIDCV-KPERLLEQ------AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 K D V K ++ +++ A+ A + + K F +SA G D + Y+ S Sbjct: 297 KWDAVEKNDKTMQEFRKKLDADFA-FMSYAPKVF-ISAKTGMRIDRLFEYIIS 347 >gi|168187283|ref|ZP_02621918.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund] gi|169294804|gb|EDS76937.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund] Length = 459 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 13/153 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N + +IVT TTR ++ +S + I +DT GI + D Sbjct: 228 IVGKPNVGKSSLLNALLMETRAIVTDVPGTTRDVIEEYMSIEGIPIKIVDTAGIRDTDDV 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC---V 143 K+ + S I +D+ LV+D+ R L +++ I + + I++LNK+D + Sbjct: 288 VEKIGVEKSREKINSSDLTVLVLDNSRSLDNEDKEIINFI--KDKKYIVLLNKVDLESKI 345 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 E L E N IE +SA G G D Sbjct: 346 DKEALKE----LNSKYIIE----ISAKTGSGLD 370 >gi|168182597|ref|ZP_02617261.1| ribosome-associated GTPase EngA [Clostridium botulinum Bf] gi|237795959|ref|YP_002863511.1| GTP-binding protein EngA [Clostridium botulinum Ba4 str. 657] gi|259645868|sp|C3L0M1|DER_CLOB6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|182674194|gb|EDT86155.1| ribosome-associated GTPase EngA [Clostridium botulinum Bf] gi|229263345|gb|ACQ54378.1| ribosome-associated GTPase EngA [Clostridium botulinum Ba4 str. 657] Length = 439 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ G ++SIV TR + + +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M R + I+ A+++ +VD L ++ + + K ++L++NKID + Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADKEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +S+++ G D+L+ Sbjct: 126 KDEN--NAYEFYN--LGIGDPVTISSSQALGLGDMLD 158 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A +G N GKS+L+N+ +G + IV+ TTR + V+ + +DT G+ Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVNTDFGEFTLIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++I+ AD+ L++D+ + ++ + +++I+NK D Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYAHDINKAILVIVNKWD 298 Query: 142 CV-KPERLLE--QAEIANKLVFI--EKTFMVSATKGHGCDDVL 179 V K ++ ++ + E+ L F+ K +SA G VL Sbjct: 299 LVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRVVKVL 341 >gi|117919157|ref|YP_868349.1| small GTP-binding protein [Shewanella sp. ANA-3] gi|117611489|gb|ABK46943.1| small GTP-binding protein [Shewanella sp. ANA-3] Length = 412 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 15/153 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG NAGKS+L+N G ++SIV+ K TT ++ + + + F DT GI + Sbjct: 24 IALVGRRNAGKSSLLNMIAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGI-DD 82 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + ++ + + +D+ LVVD +I L+ EI + ++++ NK D Sbjct: 83 DGELGAMRVKATRKVLFRSDMALLVVDEQGLYPSDIA-LVNEIQQMRMPILVVFNKADIC 141 Query: 144 KPERLLEQAEIANKLVFIEKT----FMVSATKG 172 P+ A + F ++ +VSAT G Sbjct: 142 TPK--------AENIAFCQQQSLPFIVVSATTG 166 >gi|325275324|ref|ZP_08141277.1| tRNA modification GTPase TrmE [Pseudomonas sp. TJI-51] gi|324099572|gb|EGB97465.1| tRNA modification GTPase TrmE [Pseudomonas sp. TJI-51] Length = 456 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N+ G + +IVT TTR I+R + + +DT G+ Sbjct: 218 TVVIAGRPNAGKSSLLNQLAGREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRAT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 D K+ + + I AD V LVVDS + L E + +++ LI NK Sbjct: 278 DDHVEKIGVERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDPAKVTLIRNKA 337 Query: 141 DCVKPERLLEQAE 153 D LEQ++ Sbjct: 338 DLSGERVGLEQSD 350 >gi|292806602|gb|ADE42431.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + EQA A + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEK---EQA-YAFFSFGMPKSFNISVSHNRGISALIDAILSALDL 168 >gi|122702625|emb|CAL88502.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F VS + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNVSVSHNRGISALIDAILNALNL 168 >gi|122701419|emb|CAL88099.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ T + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKTAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILRALDL 168 >gi|18075585|emb|CAD11188.1| GTP-binding protein [Helicobacter pylori] gi|122700727|emb|CAL87952.1| GTPase [Helicobacter pylori] gi|122700751|emb|CAL87964.1| GTPase [Helicobacter pylori] gi|122700921|emb|CAL88049.1| GTPase [Helicobacter pylori] gi|122702487|emb|CAL88434.1| GTPase [Helicobacter pylori] gi|122702583|emb|CAL88481.1| GTPase [Helicobacter pylori] gi|292806536|gb|ADE42398.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILDTLNL 168 >gi|303249765|ref|ZP_07335969.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251953|ref|ZP_07533854.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256448|ref|ZP_07538230.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302651332|gb|EFL81484.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860645|gb|EFM92657.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865078|gb|EFM96979.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 506 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 220 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 279 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 280 KVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 339 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 340 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 391 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|220934077|ref|YP_002512976.1| GTP-binding proten HflX [Thioalkalivibrio sp. HL-EbGR7] gi|219995387|gb|ACL71989.1| GTP-binding proten HflX [Thioalkalivibrio sp. HL-EbGR7] Length = 417 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 18/169 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR A V T +R + + I+ DT G Sbjct: 184 TVSLVGYTNAGKSTLFNRLTNAGVYAADQLFATLDPTLRRVDLPDQQAIILADTVGFV-- 241 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSSRLILIL 137 + H L+ + + + + A ++ VVD+ RE + ++++L+EI IL+ Sbjct: 242 RQLPHDLVAAFKATLTETREASLLLHVVDAADPRREDNIQQVNNVLEEIGAAEVPRILVY 301 Query: 138 NKIDC---VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 NKID V+P+ L+E A V++ SA G G + ++++L Sbjct: 302 NKIDALPEVQPQ-LVEAAHGEPARVYL------SARTGEGVELLMDWLA 343 >gi|122701351|emb|CAL88065.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNTLNL 168 >gi|156972473|ref|YP_001443380.1| putative GTPase HflX [Vibrio harveyi ATCC BAA-1116] gi|47933919|gb|AAT39525.1| HflX [Vibrio harveyi] gi|156524067|gb|ABU69153.1| hypothetical protein VIBHAR_00093 [Vibrio harveyi ATCC BAA-1116] Length = 429 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TVSLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIELADVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRE-LKVNI---HDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ E + NI H++L+EI ++++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVHEVLEEIDAHEVPTLVVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ ++ I + +T VSA G G D + + L L Sbjct: 317 NKIDNLEEQK----PRIERDEEGVPRTVWVSAMDGLGIDLLFDALTERL 361 >gi|237749241|ref|ZP_04579721.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13] gi|229380603|gb|EEO30694.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13] Length = 462 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 2/89 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 V L G TN GKS+L+N G+ V+IVT TTR + + + + +DT GI + Sbjct: 228 VVLAGQTNVGKSSLLNTLAGSNVAIVTPIAGTTRDKITETIQIEGVPVTLIDTAGIRANS 287 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 A+D ++ I +W+ I AD++ ++D+ Sbjct: 288 AEDEVERIGIERTWTEIGKADVILHLLDA 316 >gi|122702683|emb|CAL88531.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNVLDL 168 >gi|11135197|sp|P57132|MNME_BUCAI RecName: Full=tRNA modification GTPase mnmE gi|25319358|pir||H84931 thiophene and furan oxidation protein thdF [imported] - Buchnera sp. (strain APS) gi|10038709|dbj|BAB12744.1| thiophene and furan oxidation protein thdF [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 452 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G N+GKS+L+N + +IVT TTR ++ +S + +DT G+ + Sbjct: 218 IVIAGLPNSGKSSLLNILSYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTD 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ I +W I+ +D V V+D S + K D +K I +++ +LNK D Sbjct: 278 DKVERIGIMRAWEMIRKSDHVLFVIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKND 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +K E +++ + FI +SA G G + Sbjct: 338 LIKDEFGIKEID---GTAFIS----ISARTGEGVN 365 >gi|328869018|gb|EGG17396.1| GTP-binding protein engA [Dictyostelium fasciculatum] Length = 770 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 19/180 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ-TTRSIVRG--IVSEKESQIVFLDTPGIF 81 +ALVG N GKSTL NR V ++ + + TTR G IV K+ Q+V DT G+ Sbjct: 120 IALVGKPNVGKSTLFNRIVESQRQALVEDIPGTTRDRYYGEAIVYGKQFQVV--DTGGMV 177 Query: 82 N----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR---LI 134 +D + +++ + + AD++ VVD + DL + + R + ++ Sbjct: 178 GDSTTQQDQFSQMIKTQATIAMDEADVIVFVVDYRTGITQVDRDLARMLRNRQQKGQHVL 237 Query: 135 LILNKIDCVKPERLLEQAEIANKLVF----IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ++ NK D ++E E K + + F +S+ GHG D+L + LP P Sbjct: 238 VVANKADS---HMMIEGFETDMKTTLTRFGLGEPFPMSSIHGHGVLDLLERITKLLPDMP 294 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 10/146 (6%) Query: 16 VQDNSRSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKESQI 72 + D S G + ++VG NAGKS+L+NR + + SIV+ TT V +V + + Sbjct: 297 LDDPSLPGAIKISIVGQPNAGKSSLLNRIIEQERSIVSDVPGTTHDPVDCHLVWRDKHDL 356 Query: 73 VFLDTPGIFNAKDSYHKLMIRLS---WS--TIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 +DT GI + + H++ + S W+ I+ + +V V+DS L + I Sbjct: 357 TLIDTAGI--RRRATHRVGLEKSSVLWAMKAIERSHVVLFVIDSTVGLTEQDLKIAGFIT 414 Query: 128 KRSSRLILILNKIDCVKPERLLEQAE 153 +++ +I+++NK D + Q E Sbjct: 415 EQNKSVIILVNKWDLYTKNKRTAQKE 440 >gi|323486760|ref|ZP_08092079.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum WAL-14163] gi|323399899|gb|EGA92278.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum WAL-14163] Length = 462 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 7/150 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N VG + +IVT TTR + + + +DT GI +D Sbjct: 230 ILGKPNAGKSSLMNVLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDV 289 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + + + AD++ VVD L N + ++ I R S I++LNK D E Sbjct: 290 VEKIGVDKARANADDADLLIYVVDGSCPLDENDYQIMNLIEGRKS--IVLLNKTDL---E 344 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L EI K ++ VSA + G D Sbjct: 345 MVLTPEEIKEKTG--KEVVAVSAKEQRGID 372 >gi|99905871|gb|ABF68630.1| YphC [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFSISVSHNRGISALIDAVLSALNL 168 >gi|260591202|ref|ZP_05856660.1| ribosome-associated GTPase EngA [Prevotella veroralis F0319] gi|260537067|gb|EEX19684.1| ribosome-associated GTPase EngA [Prevotella veroralis F0319] Length = 437 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I++AD+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRSIENADVCILMLDATRGIESQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 V 143 V Sbjct: 299 V 299 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + + AD+V +VD+ + D+ + + ++L+ NK+ Sbjct: 62 VKSDDVFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANKV 121 Query: 141 D 141 D Sbjct: 122 D 122 >gi|84393185|ref|ZP_00991949.1| GTP-binding protein HflX [Vibrio splendidus 12B01] gi|84376237|gb|EAP93121.1| GTP-binding protein HflX [Vibrio splendidus 12B01] Length = 435 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 16/170 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++LVG TNAGKSTL N+ A V T +R I + DT G + Sbjct: 200 ISLVGYTNAGKSTLFNQITSAGVYAADQLFATLDPTLRKIELADVGPAILADTVGFI--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILILN 138 H L+ + + + ADI+ VVD+ RE +H++L+EI ++++N Sbjct: 258 HLPHDLVAAFKATLQETQEADILLHVVDASDDRFRENIQAVHEVLEEIDAHEVPTLVVMN 317 Query: 139 KIDCVKPE--RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KIDC++ + R+ E A + V+ VSA +G G + + L L Sbjct: 318 KIDCMEDQKPRIERDEEGAPRAVW------VSAMEGEGIELLFEALTERL 361 >gi|313158073|gb|EFR57478.1| tRNA modification GTPase TrmE [Alistipes sp. HGB5] Length = 476 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VGA N GKSTL+NR + + ++V+ TTR I+ + FLDT GI + Sbjct: 221 AVAIVGAPNVGKSTLLNRLLNEERAMVSDIAGTTRDIIEERANIDGIVFRFLDTAGIRST 280 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 D+ ++ I + S+I+ A I+ ++D+ + Sbjct: 281 NDTLEQMGIARTMSSIERAQIIIRLIDASQ 310 >gi|311086919|gb|ADP66999.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 453 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G N+GKS+L+N + +IVT TTR ++ +S + +DT G+ + Sbjct: 219 IVIAGLPNSGKSSLLNILSYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTD 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ I +W I+ +D V V+D S + K D +K I +++ +LNK D Sbjct: 279 DKVERIGIMRAWEMIRKSDHVLFVIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKND 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +K E +++ + FI +SA G G + Sbjct: 339 LIKDEFGIKEID---GTAFIS----ISARTGEGVN 366 >gi|260575150|ref|ZP_05843151.1| small GTP-binding protein [Rhodobacter sp. SW2] gi|259022772|gb|EEW26067.1| small GTP-binding protein [Rhodobacter sp. SW2] Length = 492 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 7/161 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +A+VG N GKSTL NR VG K+++V + TR + G + + +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGRKLALVDDQPGVTRDLREGDAKLFDLRFTVIDTAGLEEV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR-SSRLILILNKID 141 DS M RL+ ++ AD VCL + R ++ +I +R ++ +I+ +NK + Sbjct: 64 TDDSLQGRMRRLTERAVEMAD-VCLFLIDGRVGVTPTDEVFADILRRKNAHVIVGVNKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + + I + + +SA G G DD+ + L Sbjct: 123 G----KAGDAGAIEAWSLGLGDPIRLSAEHGEGMDDLYDIL 159 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 22/188 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G NAGKSTL+N+ VG + + TR + ++ I DT G+ Sbjct: 205 IAVIGRPNAGKSTLINKIVGFDRMLTGPEAGITRDAISVKADWFDTPIRIFDTAGMRKKA 264 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 D K+ + ++ A++V +++D + DL + + A+ R +++ +NK Sbjct: 265 RISDKLEKMSVSDGLRAVRFAEVVVVLLDVETPFET--QDLRIADYAETEGRAVVVAVNK 322 Query: 140 IDC--VKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVLNYLCS 184 D K E+L E E+ +L+ + VSA G G D DV N Sbjct: 323 WDLEGEKQEKLAELREMFERLLPQLRGAPLVTVSAKTGRGLDRLHAAILKAHDVWNRRVP 382 Query: 185 TLPLAPWV 192 T L W+ Sbjct: 383 TARLNTWL 390 >gi|242243258|ref|ZP_04797703.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144] gi|242233207|gb|EES35519.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144] Length = 459 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L + L + I ++ +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVI--KNEDVIVIINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + + E E+ + I+ + + K G D++ Sbjct: 337 TDLEQRLDVSELREMIGDMPLIQTSML----KQEGIDEL 371 >gi|165975864|ref|YP_001651457.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|238687527|sp|B0BTQ8|DER_ACTPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|165875965|gb|ABY69013.1| conserved putative GTP-binding protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 506 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 220 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 279 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 280 KVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 339 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 340 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 391 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYNFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|331089219|ref|ZP_08338121.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA] gi|330405771|gb|EGG85300.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA] Length = 465 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N G + +IVT TTR ++ + + +DT GI +D Sbjct: 232 IVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGVLNLNVVDTAGIRQTEDL 291 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + AD++ VVD+ R L N ++ I+ + S I++LNK D Sbjct: 292 IEKIGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKS--IVLLNKSD 344 >gi|315637643|ref|ZP_07892849.1| tRNA modification GTPase TrmE [Arcobacter butzleri JV22] gi|315478097|gb|EFU68824.1| tRNA modification GTPase TrmE [Arcobacter butzleri JV22] Length = 446 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N+ + +I++ TTR + V I +DT GI +A Sbjct: 219 VAIIGKPNVGKSSLLNKLLNFDRAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRDAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKID 141 D K+ I S I ADIV + D+ + + I DL+KE + + +I++LNK D Sbjct: 279 DVIEKIGIEKSIQAINEADIVIALFDNSKICDDEDKKILDLIKENSDK--EVIVVLNKSD 336 >gi|292806696|gb|ADE42478.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + STL L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLSTLNL 168 >gi|289435286|ref|YP_003465158.1| GTPase family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171530|emb|CBH28074.1| GTPase family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632616|gb|EFR99602.1| ribosome-associated GTPase EngA [Listeria seeligeri FSL N1-067] gi|313637164|gb|EFS02696.1| ribosome-associated GTPase EngA [Listeria seeligeri FSL S4-171] Length = 436 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKDFNIIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + I AD++ + + RE + + + +I RS++ ++L +NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNG-REGVTDADEQVAKILYRSNKPIVLAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +Q L F E + +S + G G D+L+ + + P Sbjct: 123 -NPE-MRDQIYDFYSLGFGEP-YPISGSHGLGLGDMLDAVRAHFP 164 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 +L+G N GKS+++N +G IV+ TTR + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K + + I+ +D+V +V+++ ++ + +I+++NK D Sbjct: 239 VYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAMIIVVNKWDA 298 Query: 143 V 143 + Sbjct: 299 I 299 >gi|254476934|ref|ZP_05090320.1| small GTP-binding protein domain [Ruegeria sp. R11] gi|214031177|gb|EEB72012.1| small GTP-binding protein domain [Ruegeria sp. R11] Length = 488 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG ++++V + TR + G + + +DT G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLEEA 63 Query: 84 KD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 D S M RL+ + AD+ ++D+ + + K+S+ +IL NK Sbjct: 64 TDNSLEGRMRRLTERAVDMADVCLFMIDARVGVTPTDEVFADILRKKSAHVILAANK 120 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N+ +G + + TR + + + + DT G+ Sbjct: 204 VAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQGVPMRVFDTAGMRKKA 263 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 ++ KL + +K A++V +++D+ + DL + ++A+R R +++ +NK Sbjct: 264 KVQEKLEKLSVSDGLRAVKFAEVVVVLLDAS--IPFEQQDLRIADLAEREGRAVVVAVNK 321 Query: 140 IDCV--KPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD 176 D K E+L + E +L+ + VSA G G D Sbjct: 322 WDAEENKQEKLRDLKEAFGRLLPQLRGAPLVTVSAKTGKGLD 363 >gi|160941470|ref|ZP_02088805.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC BAA-613] gi|158435616|gb|EDP13383.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC BAA-613] Length = 459 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N +G + +IVT TTR + + + + +DT GI + +D Sbjct: 227 ILGKPNAGKSSLMNVLLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDV 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + AD++ VVD R L + ++++ I R + I++LNK D Sbjct: 287 VEKIGVDRAMKAARDADLIIYVVDGSRPLDESDREIIEFI--RDRKTIVLLNKSD 339 >gi|59710609|ref|YP_203385.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114] gi|197334085|ref|YP_002154774.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11] gi|81311054|sp|Q5E8Z9|MNME_VIBF1 RecName: Full=tRNA modification GTPase mnmE gi|59478710|gb|AAW84497.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114] gi|197315575|gb|ACH65022.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11] Length = 455 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALSGKDTAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I AD V +VD Sbjct: 280 DEVERIGIERAWDEIAQADRVLFMVDG 306 >gi|59711578|ref|YP_204354.1| GTP-binding protein HflX [Vibrio fischeri ES114] gi|59479679|gb|AAW85466.1| GTP-binding protein HflX [Vibrio fischeri ES114] Length = 452 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 10/131 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CVALVG TNAGKS+++ G++V + T + VR + E + +I+ DT G Sbjct: 226 CVALVGYTNAGKSSMMRALTGSEVLVENKLFATLDTTVRALYPETQPRILVSDTVGFI-- 283 Query: 84 KDSYHKLMIRL--SWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 K H L+ + + A ++ VVD+ +L V +H++L E+ +L+ Sbjct: 284 KKLPHDLVASFHSTLAEAHDASLLLYVVDASDPTFRTQLDV-VHEVLGEVGVDGIDKLLV 342 Query: 137 LNKIDCVKPER 147 LNK D + PE+ Sbjct: 343 LNKSDQLTPEQ 353 >gi|28198002|ref|NP_778316.1| GTP-binding protein [Xylella fastidiosa Temecula1] gi|182680628|ref|YP_001828788.1| GTP-binding proten HflX [Xylella fastidiosa M23] gi|28056062|gb|AAO27965.1| GTP-binding protein [Xylella fastidiosa Temecula1] gi|182630738|gb|ACB91514.1| GTP-binding proten HflX [Xylella fastidiosa M23] gi|307579087|gb|ADN63056.1| GTP-binding proten HflX [Xylella fastidiosa subsp. fastidiosa GB514] Length = 450 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 12/166 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TN+GKSTL N GA T VR IV S + DT G + Sbjct: 201 IALVGYTNSGKSTLFNALTGASAYTANQLFATLDPKVRRIVLPGSSAM-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSH---RELKVN-IHDLLKEIAKRSSRLILILN 138 H+L+ R + S + AD++ V+D+ RE +++ + ++L+ I +L+ N Sbjct: 258 HLPHELVAAFRSTLSEAREADLLLHVIDAADPLREERIDQVDEVLQAIGAGELPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD---DVLNY 181 KIDC++ + + A+ + +SA GHG + +LN+ Sbjct: 318 KIDCIEGAEVRQDAQDGIPDQARRERVWLSARHGHGVELLQQILNH 363 >gi|28952039|ref|NP_239858.2| tRNA modification GTPase TrmE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681404|ref|YP_002467789.1| tRNA modification GTPase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219681960|ref|YP_002468344.1| tRNA modification GTPase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471078|ref|ZP_05635077.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621693|gb|ACL29849.1| tRNA modification GTPase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624247|gb|ACL30402.1| tRNA modification GTPase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086343|gb|ADP66424.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087508|gb|ADP67587.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 453 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G N+GKS+L+N + +IVT TTR ++ +S + +DT G+ + Sbjct: 219 IVIAGLPNSGKSSLLNILSYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTD 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ I +W I+ +D V V+D S + K D +K I +++ +LNK D Sbjct: 279 DKVERIGIMRAWEMIRKSDHVLFVIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKND 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +K E +++ + FI +SA G G + Sbjct: 339 LIKDEFGIKEID---GTAFIS----ISARTGEGVN 366 >gi|32034718|ref|ZP_00134849.1| COG1160: Predicted GTPases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207887|ref|YP_001053112.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae L20] gi|307260878|ref|ZP_07542564.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166224300|sp|A3MZC1|DER_ACTP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|126096679|gb|ABN73507.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306869445|gb|EFN01236.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 506 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 220 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 279 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 280 KVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 339 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 340 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 391 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|319441573|ref|ZP_07990729.1| putative GTP-binding protein [Corynebacterium variabile DSM 44702] Length = 483 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 17/182 (9%) Query: 5 EITFFNEHKDF---VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EIT + +D +D+S VA+ G TNAGKS+L+N GA V + T Sbjct: 238 EITGMKKARDIKRRQRDSSAVAQVAIAGYTNAGKSSLLNALTGAGVLVEDALFATLDPTT 297 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR----ELKV 117 R +VF DT G + R + + AD+V VVD E Sbjct: 298 RRAELADGRTVVFSDTVGFIRFLPTQLVEAFRSTLEEVMAADVVLHVVDGSDPFPMEQIA 357 Query: 118 NIHDLLKEIAKRSSR----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 ++ ++ EIA+ + IL++NK+D P L A++ N+L + VSA+ G Sbjct: 358 AVNKVIGEIAEETGEDAPPEILVVNKVDAADP---LVLADLRNRL---DDVIFVSASTGE 411 Query: 174 GC 175 G Sbjct: 412 GI 413 >gi|242255912|gb|ACS88940.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDL 168 >gi|190149696|ref|YP_001968221.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263004|ref|ZP_07544626.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692380|sp|B3H0R7|DER_ACTP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189914827|gb|ACE61079.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871630|gb|EFN03352.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 506 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 220 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 279 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 280 KVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 339 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 340 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 391 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|320530991|ref|ZP_08032023.1| tRNA modification GTPase TrmE [Selenomonas artemidis F0399] gi|320136740|gb|EFW28690.1| tRNA modification GTPase TrmE [Selenomonas artemidis F0399] Length = 462 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 20/159 (12%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-------FLDTPG 79 +VG N GKS+L+N +G + +IVT TTR ++ E QIV LDT G Sbjct: 229 IVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVI-------EEQIVIEGIPLRLLDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + A+D+ ++ + + + A++V V D L DL+ + ++ +I++ NK Sbjct: 282 LRAAEDAVEQIGVARTQRHLADAELVLAVFDGAAPLTPEDEDLIVRLRNCAAEMIILCNK 341 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + +L A+ + + ++SA G G DD+ Sbjct: 342 ED---RDSVLTAADFS---MLDAPVLVISAQAGTGLDDL 374 >gi|319639448|ref|ZP_07994198.1| tRNA modification GTPase mnmE [Neisseria mucosa C102] gi|317399343|gb|EFV80014.1| tRNA modification GTPase mnmE [Neisseria mucosa C102] Length = 454 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 3/152 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G ++IVT TTR VR ++ + +DT G+ Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I S + AD+ +++D + +L + + + I I NK D Sbjct: 280 DVVEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNSLPEGLKK-IEIHNKADLTG 338 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +A + +SA G G D Sbjct: 339 EPVAVRSDGLAQ--TGADTVISLSAKTGAGLD 368 >gi|149369730|ref|ZP_01889582.1| GTP-binding protein EngA [unidentified eubacterium SCB49] gi|149357157|gb|EDM45712.1| GTP-binding protein EngA [unidentified eubacterium SCB49] Length = 433 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST NR + + +IV TR G + +DT G Sbjct: 3 IVAIVGRPNVGKSTFFNRMIQRREAIVDAVSGVTRDRHYGKSDWNGREFSLIDTGGYVKG 62 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + I I AD + +V + D+LK + + + +NK+D Sbjct: 63 SDDVFETEIDKQVELAIDEADAIIFMVSVEDGVTGMDEDVLKLLRRSQKPFFVAVNKVDA 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R + E N + IEK + +S+ G G D+L+ L +LP Sbjct: 123 AN--RQNDAVEFYN--MGIEKFYTLSSINGSGTGDLLDALVDSLP 163 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 177 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRKAK 236 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I+H+D++ LV D+ R + ++ +A R+++ ++IL NK D Sbjct: 237 VKEDLEFYSVMRSVRAIEHSDVIILVFDATRGFDGQVQNIF-WLAHRNNKGVVILANKWD 295 Query: 142 CVKPE 146 V+ + Sbjct: 296 LVEKD 300 >gi|122702759|emb|CAL88569.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDL 168 >gi|328885518|emb|CCA58757.1| GTP-binding protein HflX [Streptomyces venezuelae ATCC 10712] Length = 497 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + DT G Sbjct: 277 SVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPTGRVYTLADTVGFVRH 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + R + + +D++ VVD SH E + ++ +++ + I+++NK Sbjct: 337 LPHHLVEAFRSTMEEVGDSDLILHVVDGSHPAPEEQLAAVREVFRDVGAVNVPEIVVINK 396 Query: 140 IDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLCSTLP 187 D P + +L+ +EK + +VSA G G + +L + S LP Sbjct: 397 ADAADP-------LVLQRLLRMEKHSIVVSARSGQGIEQLLALIDSELP 438 >gi|313203779|ref|YP_004042436.1| ribosome-associated GTPase enga [Paludibacter propionicigenes WB4] gi|312443095|gb|ADQ79451.1| ribosome-associated GTPase EngA [Paludibacter propionicigenes WB4] Length = 437 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 16/185 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR ++ +IV + TTR G + + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTKSRRAIVNDEAGTTRDRQYGKCEWEGREFSVIDTGGWVINS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK----RSSRLILILNK 139 D + + R I+ AD++ +VD ++ I D E+A+ ++ ++L+ NK Sbjct: 65 SDVFEGEIKRHVVLAIEEADVILFLVD----IQNGITDYDLEVAQILRGQTKPVMLVSNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 D E AE + + + M+SA G G D L+ L + +S D Sbjct: 121 ADTF--EWQYGVAEFYK--LGLGEPHMISAINGLGTGDFLDKLLTYFKPD---FSDDLEE 173 Query: 200 DLPMF 204 +LP F Sbjct: 174 ELPRF 178 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS+++N FVG + +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFVGEERTIVTDIAGTTRDSIYTRFNKFGHDFYLVDTAGIRKKAK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S I++ D+ L++D+ R ++ ++ I K I+ +NK Sbjct: 239 VNEDLEYYSVV--RSIRAIENCDVCILMIDATRGIESQDLNIFSLIQKNRKGFIVCVNKW 296 Query: 141 DCVK 144 D ++ Sbjct: 297 DLIE 300 >gi|282165329|ref|YP_003357714.1| GTP-binding protein [Methanocella paludicola SANAE] gi|282157643|dbj|BAI62731.1| GTP-binding protein [Methanocella paludicola SANAE] Length = 420 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 79/182 (43%), Gaps = 22/182 (12%) Query: 24 CVALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 VAL G TNAGKSTL+N VG AK + T V TTRS+ G + + + DT G Sbjct: 192 LVALAGYTNAGKSTLMNALVGETVVAKDQLFTTLVPTTRSLQIG-----QRKTLLTDTVG 246 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK------VNIHDLL-KEIAKRSSR 132 + R + I AD++ LVVD + V HD + EI Sbjct: 247 FIKNLPHFMVEAFRSTLEEIYLADVIILVVDVSEPPEALVDKLVTCHDTMWDEIG--PVP 304 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +I LNK D + E L E+ + L ++SA G G D++ + LP W Sbjct: 305 VITALNKSDLITEEELEERKQAIVHLA--PHPVVISARTGEGLDELKQKIGKYLP--KWT 360 Query: 193 YS 194 S Sbjct: 361 SS 362 >gi|254423905|ref|ZP_05037623.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335] gi|196191394|gb|EDX86358.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335] Length = 459 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA++G N GKS+L+N + + +IVT+ TTR +V + I LDT G Sbjct: 221 RTGLKVAIIGQPNVGKSSLLNAWSKSDRAIVTNLPGTTRDVVESQLIVGGIPIQVLDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I A + K+ I S + + AD+V L +D+ L ++I + + I+++NK Sbjct: 281 IHAATNEVEKIGIERSLTAAQSADLVLLTIDATVGWTAADQALYEQI--KDTPHIIVVNK 338 Query: 140 IDCV 143 ID + Sbjct: 339 IDLL 342 >gi|122700615|emb|CAL87896.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|303252646|ref|ZP_07338809.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247405|ref|ZP_07529452.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648614|gb|EFL78807.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856102|gb|EFM88258.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 506 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 220 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 279 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 280 KVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 339 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 340 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 391 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|311113256|ref|YP_003984478.1| GTP-binding protein [Rothia dentocariosa ATCC 17931] gi|310944750|gb|ADP41044.1| GTP-binding protein [Rothia dentocariosa ATCC 17931] Length = 549 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 16/193 (8%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ + E K + +R VA+ G TNAGKS+L+NR A V + T V Sbjct: 283 EIAAMAPARETKRLSRKRNRVPSVAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTV 342 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIH 120 R + DT G + + R + + AD++ VVD SH + + I Sbjct: 343 RKAQTPDGIGYTLSDTVGFVRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQIR 402 Query: 121 DLLKEIAKRSSRL---ILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + + IA +R I+ LNK D P ER+ ++ +N ++ VSA G G Sbjct: 403 AVREVIADLDARRIPEIIALNKADAADPFILERMRQRE--SNHVI-------VSARTGEG 453 Query: 175 CDDVLNYLCSTLP 187 D++ + T+P Sbjct: 454 IDELKQKIADTIP 466 >gi|261493816|ref|ZP_05990330.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310519|gb|EEY11708.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 511 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 225 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 284 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 285 KVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 344 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 345 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 396 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|118444248|ref|YP_876979.1| tRNA modification GTPase TrmE [Clostridium novyi NT] gi|166200476|sp|A0PX77|MNME_CLONN RecName: Full=tRNA modification GTPase mnmE gi|118134704|gb|ABK61748.1| tRNA modification GTPase TrmE [Clostridium novyi NT] Length = 459 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 17/155 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N + +IVT TTR ++ +S I +DT GI + D Sbjct: 228 IVGKPNVGKSSLLNALLMETRAIVTDVPGTTRDVIEEYMSIDGIPIKIIDTAGIRDTDDV 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDC-- 142 K+ + S I ++D+ LV+D+ R L D KEI + + I++LNK+D Sbjct: 288 VEKIGVEKSREKINNSDLTVLVLDNSRGL----DDEDKEIINFIKDKKYIVLLNKMDLES 343 Query: 143 -VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + E L E N IE +SA G G D Sbjct: 344 KIDKEALKE----LNSKYIIE----ISAKTGSGLD 370 >gi|323703070|ref|ZP_08114725.1| ribosome-associated GTPase EngA [Desulfotomaculum nigrificans DSM 574] gi|323531964|gb|EGB21848.1| ribosome-associated GTPase EngA [Desulfotomaculum nigrificans DSM 574] Length = 442 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 15/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS L NR VG++++IV TR + + + +DT G+ A Sbjct: 5 IVAIVGRPNVGKSMLFNRIVGSRIAIVEDMPGVTRDRLYQDAEWQGREFTLVDTGGLDFA 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D + + + ++ AD V VVD+ L ++ K + ++L NK+ Sbjct: 65 EDVITSQIRKQAELAMREADAVIFVVDARAGLTTTDEEVAKVLRLTDKPVLLAANKV--- 121 Query: 144 KPERLLEQAEIANKLVF------IEKTFMVSATKGHGCDDVLNYLCSTLP 187 EQ ++A + + +SA +G D+L+ L LP Sbjct: 122 ------EQFDLAKIPYYDFYRLGLGDPIPISAAEGLNTGDLLDELVKLLP 165 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 +A++G N GKS+LVN +G + IV++ TTR + V +DT G+ N Sbjct: 179 IAVIGRPNVGKSSLVNAILGEERVIVSNIPGTTRDAIDSPFERNGKSYVIVDTAGMRRRN 238 Query: 83 AKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + + + I D+ +++D+ + ++ ++ +IL++NK D Sbjct: 239 RIDLPAERYSVVRALRAIDRCDVALMLLDATEGVTEQDKRIVGYAHEKGKAIILVVNKWD 298 Query: 142 CVK 144 ++ Sbjct: 299 LIE 301 >gi|319900091|ref|YP_004159819.1| ribosome-associated GTPase EngA [Bacteroides helcogenes P 36-108] gi|319415122|gb|ADV42233.1| ribosome-associated GTPase EngA [Bacteroides helcogenes P 36-108] Length = 437 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S +I+++D+ L++D+ R ++ ++ I K + L++++NK Sbjct: 239 VNEDLEYYSVI--RSIRSIENSDVCILMLDATRGIESQDLNIFSLIQKNAKGLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 13/168 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILI 136 N+ D + + + + + AD++ VVD + DL ++A +RS + ++LI Sbjct: 62 VNSDDVFEEEIRKQVLMALDEADVILFVVDVMN----GVTDLDLQVATILRRSKKPVLLI 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 NK D E E + + + + VSA G G D+++ + S Sbjct: 118 ANKTD--NNELQYNAPEFYS--LGLGDPYCVSAITGSGTGDMMDLIVS 161 >gi|145637903|ref|ZP_01793547.1| GTP-binding protein EngA [Haemophilus influenzae PittHH] gi|145268903|gb|EDK08862.1| GTP-binding protein EngA [Haemophilus influenzae PittHH] Length = 503 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ + Sbjct: 217 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGV-RKR 275 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 276 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKW 335 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 336 DGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 388 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 13/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I ADIV +VD+ L + I + L++ +++ I++ NK Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQ--RQNKTTIVVANKT 122 Query: 141 DCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 123 DGIDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|1199801|emb|CAA64971.1| thdF [Borrelia burgdorferi] gi|2689169|emb|CAA06004.1| thdF [Borrelia burgdorferi] Length = 463 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 + L G+ NAGKS+L N F+ SIV+ TTR + S + I+F DT G+ Sbjct: 223 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLR 280 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +A + +L I S S IK A +V V+D L + L + K +S+++ +LNKID Sbjct: 281 DADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDF-LFIDSNKSNSKILFVLNKID 339 >gi|113971588|ref|YP_735381.1| small GTP-binding protein [Shewanella sp. MR-4] gi|113886272|gb|ABI40324.1| small GTP-binding protein [Shewanella sp. MR-4] Length = 412 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 15/153 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG NAGKS+L+N G ++SIV+ K TT ++ + + + F DT GI + Sbjct: 24 IALVGRRNAGKSSLLNMIAGQQISIVSDIKGTTTDAVTKAYELQPLGPVTFYDTAGI-DD 82 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + ++ + + +D+ LVVD +I L+ EI + ++++ NK D Sbjct: 83 DGELGAMRVKATRKVLFRSDMALLVVDEQGLYPSDIA-LVNEIQQMRMPILVVFNKADIC 141 Query: 144 KPERLLEQAEIANKLVFIEKT----FMVSATKG 172 P+ A + F ++ +VSAT G Sbjct: 142 TPK--------AEDIAFCQQQSLPFIVVSATTG 166 >gi|332184417|gb|AEE26671.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf. novicida 3523] Length = 450 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILIL---NKI 140 I+ + I+ AD V V D + +V +I D++ E + + I I NKI Sbjct: 279 IESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKDIIPEFYDQIPKNIDITYVHNKI 338 Query: 141 DCVK 144 D +K Sbjct: 339 DLLK 342 >gi|262273126|ref|ZP_06050943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Grimontia hollisae CIP 101886] gi|262222882|gb|EEY74190.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Grimontia hollisae CIP 101886] Length = 454 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ +A Sbjct: 219 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I AD V +VD Sbjct: 279 DEVERIGIERAWDEIAQADRVLFMVDG 305 >gi|237800048|ref|ZP_04588509.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022903|gb|EGI02960.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6] Length = 222 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST+ NR + +IV TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + M S I+ AD+V +VD+ + + + KR+ R ++ NKID + Sbjct: 64 EHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L +AE + + + V+ G G +L P Sbjct: 124 --DENLARAEFSP--MGLGDAIPVAGAHGRGISQMLEIALREFP 163 >gi|224534062|ref|ZP_03674645.1| tRNA modification GTPase TrmE [Borrelia burgdorferi CA-11.2a] gi|224512761|gb|EEF83129.1| tRNA modification GTPase TrmE [Borrelia burgdorferi CA-11.2a] Length = 373 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 5/121 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 + L G+ NAGKS+L N F+ SIV+ TTR + S + I+F DT G+ Sbjct: 133 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLR 190 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +A + +L I S S IK A +V V+D L + L + K +S+++ +LNKID Sbjct: 191 DADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDF-LFIDSNKSNSKILFVLNKID 249 Query: 142 C 142 Sbjct: 250 L 250 >gi|182624431|ref|ZP_02952215.1| GTP binding protein [Clostridium perfringens D str. JGS1721] gi|177910434|gb|EDT72811.1| GTP binding protein [Clostridium perfringens D str. JGS1721] Length = 597 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 113/263 (42%), Gaps = 41/263 (15%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ------ 55 E+ +I E + + ++ V+LVG TNAGKSTL N S + + + Sbjct: 343 ELKKIKKIRETQRERRSKDKTSQVSLVGYTNAGKSTLRNTLCAESASTLATQAKDKVFEA 402 Query: 56 -----TTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLV 108 T + R I I DT G + H+L+ + + + ++D++C V Sbjct: 403 DMLFATLDTTTRAIKLPDNRDITLTDTVGFVSKLP--HELVEAFKSTLEEVIYSDLLCHV 460 Query: 109 VDSH----RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE----QAEIANKLVF 160 VD+ +E + + +L E+ S IL+LNKID E+L E + I NK+V Sbjct: 461 VDASSDNAQEEIIAVEKVLGELKALESAKILVLNKIDKADEEKLNELEAKYSSIYNKVVK 520 Query: 161 IEKTFMVSATKGHGCDDVLNYLCSTLPLA----PWV--YSADQISDLPMFHFTAEITREK 214 I SA + DD+L + LP ++ Y+A Q+ + H A ++ E+ Sbjct: 521 I------SARERINLDDLLEAISEELPYTLKSKEYIIPYTAQQV--VAYLHRNANVSEEE 572 Query: 215 LFLHLHKEIPYSSCVVTEKWEEK 237 +E Y V E+ E K Sbjct: 573 ----YREEGTYIKAEVDEEVENK 591 >gi|168334058|ref|ZP_02692274.1| small GTP-binding protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 455 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 12/147 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VA+VG N GKS+LVN+ +G IV+ TTR V V + V +DT G+ Sbjct: 193 VAIVGKPNVGKSSLVNKILGEDRVIVSDIAGTTRESVDTEVVIDGQKYVLIDTAGVRKRK 252 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 K+ K + + S I+ ADIV +++D++ E I + E K S I+++N Sbjct: 253 KVKEDIEKYSVIRTISAIERADIVLILIDANEGITEQDTKIAGMAHEAGKGS---IIVVN 309 Query: 139 KIDCV-KPERLLEQ--AEIANKLVFIE 162 K D + K ++ + Q E+ N L +++ Sbjct: 310 KWDAIEKNDKTMNQFTKELVNTLAYMK 336 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR AK+SI+ TR + + +DT GI + Sbjct: 18 VVAVVGRPNVGKSTLFNRLAKAKISIIDDTPGVTRDRIYADAEWLNKKFTLVDTGGIEPD 77 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D M + + I AD++ +VD + + + + K ++L++NK+D Sbjct: 78 SNDVILSQMRKQAEVAIDTADVIIFLVDVKTGVVDSDMHVANMVRKSQKPVVLVVNKVDD 137 Query: 143 VKPERL--LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + E + + + VSA++ D+L+ +C+ P Sbjct: 138 MAKYHMGIYEFYSLG-----LGEPIPVSASQPLNLGDMLDEVCAHFP 179 >gi|117620764|ref|YP_856299.1| GTP-binding protein EngA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166224301|sp|A0KJ48|DER_AERHH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|117562171|gb|ABK39119.1| GTP-binding protein EngA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 499 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + + + K ++ L+ NK D + Sbjct: 64 EEGIELKMAEQSLLAIEEADVVLFMVDARAGLTAADQAIAEHLRKTHKKVFLVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + + + + + + ++A G G +L L LAP Sbjct: 124 DGDSAVSEF----YGLALGEVYQMAAAHGRGVLSLLE-----LALAP 161 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG N GKSTL NR +G IV TTR V + E + V +DT G+ Sbjct: 216 AIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYIPMERDEQKYVIIDTAGVRRRGK 275 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ K + + I+ A++ LV+D+ + +L + ++L++NK D Sbjct: 276 VHETVEKFSVIKTLKAIEDANVCLLVIDAQETITDQDLSILGFVLNTGRSVVLVVNKWDG 335 Query: 143 VKPERLLE--QAEIANKLVFIE--KTFMVSATKGHGC 175 + +++ E + E+ +L FI+ + +SA G G Sbjct: 336 LD-QKVKEDVKNELDRRLGFIDFARVHFISALHGSGV 371 >gi|47459318|ref|YP_016180.1| GTP-binding protein EngA [Mycoplasma mobile 163K] gi|47458648|gb|AAT27969.1| predicted GTPase protein [Mycoplasma mobile 163K] Length = 432 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 6/166 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S +A+VG N GKST+ NR +G + ++V TR + + +DT GI Sbjct: 2 SKLIAIVGKPNVGKSTIFNRIIGKRQAVVADIPGVTRDRLYEKATWDGKTFEVVDTGGIQ 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ AD++ VV+ EL + + ++ + K + ++ + NK+ Sbjct: 62 IEDVPFQKQIKIQAMIAIEEADVIIFVVEGRSELSKDDYLIVDILRKSNKQIFFVANKL- 120 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E E KL F +K F +SA G G D+L T P Sbjct: 121 ----EDNHEFDHSLYKLGF-DKIFKISALHGEGIGDLLEACTKTFP 161 Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 12/145 (8%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E KDF +A++G NAGKS+L+N + + SIV+ TT + K+ Sbjct: 167 EDKDF--------KIAIIGKPNAGKSSLLNTILDEERSIVSPIPGTTHDPISESFYYKDE 218 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 ++ +DT GI D ++ ++ TI+ +++V L++D+ + Sbjct: 219 KLKIIDTAGIIKKSRMADDIDFYILNRAFKTIEESNLVLLILDASLGSTHFDATIAGTSF 278 Query: 128 KRSSRLILILNKIDCV-KPERLLEQ 151 +++ +I+++NK D + K E+ +E+ Sbjct: 279 EQNKPIIIVVNKWDLIEKNEKTMEE 303 >gi|148265177|ref|YP_001231883.1| GTP-binding protein EngA [Geobacter uraniireducens Rf4] gi|189037149|sp|A5G692|DER_GEOUR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146398677|gb|ABQ27310.1| small GTP-binding protein [Geobacter uraniireducens Rf4] Length = 441 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 11/167 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A+VG N GKSTL NR VG + ++V TR V + + +DT G Sbjct: 5 IAIVGRPNVGKSTLFNRIVGRRKAMVDDMPGVTRDRNYANVDRFDVPFILIDTGGFEPET 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 D + M S + AD++ V+D L V + ++L+ + K + ++NKI Sbjct: 65 NDRLLQQMREQSQLAMAEADVILFVMDGRDGLTPADVEVVEMLRRVDK---PIFYLINKI 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D K E + ++ F VSA G +D+++ + LP Sbjct: 122 DGDKQETAIGDFYTLG----VDTIFTVSAEHNRGVNDLMDEVIKALP 164 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 8/157 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + + TTR + + + + +DT GI Sbjct: 178 IAVIGRPNVGKSTLVNRLLGIERVVANPTPGTTRDSIDTYFTCNRKRYLLIDTAGIRRKG 237 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+ + S +I+ AD+V +V+D+ + + + I ++NK D Sbjct: 238 KTTEKIEKYSVVDSLRSIERADVVLIVIDAEEGVTEQDTKIAGYAYEAGRGCIFVVNKWD 297 Query: 142 CVKPE-----RLLEQAEIANKLVFIEKTFMVSATKGH 173 + + + +E+ + K + VSA G Sbjct: 298 TLTKDNASMGKFIEKIRMEFKYLPFAPIVFVSAKTGQ 334 >gi|229824620|ref|ZP_04450689.1| hypothetical protein GCWU000282_01967 [Catonella morbi ATCC 51271] gi|229785991|gb|EEP22105.1| hypothetical protein GCWU000282_01967 [Catonella morbi ATCC 51271] Length = 460 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 A++G N GKS+L+N +G +IVT TTR + +S K + +DT GI + Sbjct: 224 TAIIGRPNVGKSSLLNYLIGEDKAIVTDIAGTTRDTIEEYISIKGVPLHIIDTAGIRHTD 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + ++ + S + I+ AD++ L+++ + L +LL E+ + +R+IL LNK D Sbjct: 284 EVVEQIGVEKSRAMIESADLILLILNQAQALDPMDLELL-ELTQNKARIIL-LNKQD 338 >gi|122701409|emb|CAL88094.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|90416482|ref|ZP_01224413.1| GTP-binding protein [marine gamma proteobacterium HTCC2207] gi|90331681|gb|EAS46909.1| GTP-binding protein [marine gamma proteobacterium HTCC2207] Length = 431 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 16/172 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A V + T +R + ++ ++VF DT G + Sbjct: 202 AVSLVGYTNAGKSTLFNNLTQADVFVANQLFATLDPTMRKLEVPEQGEVVFADTVGFIS- 260 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILIL 137 H+L+ R + +A ++ VVD E + + ++LKEI +++ Sbjct: 261 -HLPHRLVDAFRATLEEAANATLLLHVVDGAAEDRATNIKRVEEVLKEIDAHKLPTLMVY 319 Query: 138 NKIDCVK--PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D ++ R+ AE V++ SA K G D +L + LP Sbjct: 320 NKVDLLEDFSARIDRNAEGQPVAVWL------SALKNEGLDLLLQAVAERLP 365 >gi|88860621|ref|ZP_01135258.1| predicted GTPase [Pseudoalteromonas tunicata D2] gi|88817216|gb|EAR27034.1| predicted GTPase [Pseudoalteromonas tunicata D2] Length = 454 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 ++ E+T + +++ R V + G NAGKS+L+N G +IVT TTR ++ Sbjct: 199 QLSEVTNQAKQGSIIREGMR---VVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDVL 255 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 R + + +DT G+ ++ D ++ I +W IK AD V ++D Sbjct: 256 REHIHIDGMPLHIIDTAGLRDSPDIVEQIGIERAWDEIKQADRVLFMLDG 305 >gi|325265154|ref|ZP_08131880.1| GTP-binding protein [Clostridium sp. D5] gi|324029558|gb|EGB90847.1| GTP-binding protein [Clostridium sp. D5] Length = 406 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+++N G ++IV+ K TT +++ + +V +DTPG+ + Sbjct: 14 IGIFGRRNAGKSSIINAITGQNLAIVSDIKGTTTDPVLKAMELLPLGPVVIIDTPGLDDT 73 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + KL I+ ++ + DI LV+DS + +L I K+ +++LNK D Sbjct: 74 GE-LGKLRIQKAYQILNKTDIAVLVIDSTAGMTEADAGILDRIMKKQIPFVIVLNKSD 130 >gi|315651881|ref|ZP_07904884.1| ribosome-associated GTPase EngA [Eubacterium saburreum DSM 3986] gi|315485883|gb|EFU76262.1| ribosome-associated GTPase EngA [Eubacterium saburreum DSM 3986] Length = 443 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKS+++NR G IV+ TTR + +V + + +F+DT G+ Sbjct: 181 IAIVGKPNVGKSSIINRLTGQNRVIVSDIAGTTRDAIDTVVVNNKQEYIFIDTAGLRRKS 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V LV+D+ + + R +I+ +NK D Sbjct: 241 KVKEDIERYSIIRTVTAVERADVVILVIDASEGVTEQDAKIAGIAHDRGKGIIVAVNKWD 300 Query: 142 CVK 144 ++ Sbjct: 301 LIE 303 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA++G N GKSTL N G +SIV TR + + + +DT GI Sbjct: 5 VVAIIGRPNVGKSTLFNAIAGEPISIVKDTPGVTRDRIYADCTWLDMNFTLIDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D M + I+ AD++ + D + L + + + K ++L +NK+D Sbjct: 65 SSDVILSQMREQAEIAIETADVIVFITDVRQGLVDSDSKVCDMLRKSRKPVVLAVNKVDS 124 Query: 143 V 143 + Sbjct: 125 I 125 >gi|260425018|ref|ZP_05733999.2| tRNA modification GTPase TrmE [Dialister invisus DSM 15470] gi|260403939|gb|EEW97486.1| tRNA modification GTPase TrmE [Dialister invisus DSM 15470] Length = 485 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G NAGKS+L+N + + +IVT TTR + V ++ +DT G Sbjct: 245 REGLRTAIIGRPNAGKSSLLNALLQEERAIVTDVPGTTRDTIEEAVRISGVSLLLMDTAG 304 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + ++ I + ++++ AD++ V+D L ++L + + + I+ILNK Sbjct: 305 LRETDNKVEQIGIERARASMEKADLILAVIDGSSPLDEEDKEILHSLVGKKA--IVILNK 362 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + + EIA + + +SA G G D++ Sbjct: 363 YDLTPEVKAEDIWEIAGHVPVVS----LSARYGSGMDEL 397 >gi|315497189|ref|YP_004085993.1| tRNA modification gtpase trme [Asticcacaulis excentricus CB 48] gi|315415201|gb|ADU11842.1| tRNA modification GTPase TrmE [Asticcacaulis excentricus CB 48] Length = 446 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 21/175 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKS+L N + +IVT TTR ++ + + DT G+ + Sbjct: 218 IAIMGKPNAGKSSLFNALLQTDAAIVTPIAGTTRDVIESPIRIGPYAALIYDTAGLRETE 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D IR + + + AD+ V+D+ D ++++ S LILNK D V Sbjct: 278 DVVESEGIRRAKARGQSADLRLWVLDA--------SDAPEDLSAMQSGDYLILNKSDQVS 329 Query: 145 PERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYL---------CSTLPLA 189 + L +++ +K V + F S TKG G D V L ST P A Sbjct: 330 SQALAALRSQYEDKKV---RLFETSLTKGEGIDAVRRALEVDLEAALSLSTFPAA 381 >gi|238763554|ref|ZP_04624515.1| GTP-binding protein engA [Yersinia kristensenii ATCC 33638] gi|238698186|gb|EEP90942.1| GTP-binding protein engA [Yersinia kristensenii ATCC 33638] Length = 494 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 54/123 (43%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M S I+ ADIV +VD+ L + + + R L+ NK D + Sbjct: 64 EDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTL NR +G +V TTR + ++ E + + +DT G+ Sbjct: 209 LAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYILIDTAGVRKRG 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V LV+D+ + LL I L++ +NK D Sbjct: 269 KITETVEKFSVIKTLQAIEDSNVVLLVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWD 328 Query: 142 CVKPERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + E + ++ + +L F++ + +SA G G ++ Y CST Sbjct: 329 GMTEEARAQVKDMLDLRLGFVDFARIHFISALHGSGVGNLFESIQEAYDCST 380 >gi|226324619|ref|ZP_03800137.1| hypothetical protein COPCOM_02403 [Coprococcus comes ATCC 27758] gi|225207067|gb|EEG89421.1| hypothetical protein COPCOM_02403 [Coprococcus comes ATCC 27758] Length = 442 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 4/142 (2%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 + +F E +++ R VA+VG N GKS+++NR +G IV+ TTR + V Sbjct: 162 LAYFPEGAGQEEEDDRP-RVAIVGKPNVGKSSIINRLIGKDRVIVSDIAGTTRDAIDTEV 220 Query: 66 SEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + VF+DT G+ K+ + I + + ++ AD+V +V+D+ + + Sbjct: 221 VHNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDAAEGVTEQDAKI 280 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 +R +I+++NK D ++ Sbjct: 281 AGIAHERGKGVIIVVNKWDAIE 302 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G K++IV TR + V+ + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNALAGEKIAIVKDTPGVTRDRIYAEVNWLDKEFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 ++D M + I AD++ + D + L V+ + ++ +RS + +IL++NK+D Sbjct: 65 SRDVILSQMREQAQIAIDTADVILFMTDVKQGL-VDSDSKVADMLRRSHKPVILVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + I +SA++ G D+L+ + + P Sbjct: 124 NFN-KMMPDVYEFYN--LGIGDPVPISASERIGIGDMLDKVLAYFP 166 >gi|225549804|ref|ZP_03770768.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 118a] gi|225369612|gb|EEG99061.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 118a] Length = 464 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 + L G+ NAGKS+L N F+ SIV+ TTR + S + I+F DT G+ Sbjct: 224 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLR 281 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +A + +L I S S IK A +V V+D L + L + K +S+++ +LNKID Sbjct: 282 DADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDF-LFIDSNKSNSKILFVLNKID 340 >gi|122701389|emb|CAL88084.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|93004278|gb|ABE97059.1| YphC [Helicobacter pylori] gi|99905861|gb|ABF68625.1| YphC [Helicobacter pylori] gi|122702715|emb|CAL88547.1| GTPase [Helicobacter pylori] gi|242255892|gb|ACS88930.1| GTPase [Helicobacter pylori] gi|242255896|gb|ACS88932.1| GTPase [Helicobacter pylori] gi|242255934|gb|ACS88951.1| GTPase [Helicobacter pylori] gi|317453531|emb|CBL87875.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDL 168 >gi|326204998|ref|ZP_08194849.1| ribosome-associated GTPase EngA [Clostridium papyrosolvens DSM 2782] gi|325984864|gb|EGD45709.1| ribosome-associated GTPase EngA [Clostridium papyrosolvens DSM 2782] Length = 441 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKST N G+++SIV TR + + + ++ +DT GI Sbjct: 5 VVAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYTEIEWRSTKFTLIDTGGIEPY 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D + M R + I+ AD++ +VD + ++ + K ++L +NK+D Sbjct: 65 SEDIIMQQMKRQAEIAIETADVIVFMVDGKDGMTATDKEVATMLRKSQKPVVLCVNKVDR 124 Query: 143 V--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + P + E + + ++S+ G G D+L+ + P Sbjct: 125 IGEPPPDVYEFYNLG-----MGDMQIISSVHGLGMGDLLDAIFEHFP 166 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 8/185 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKS+L+N +G IV++ TTR + V + F+DT GI Sbjct: 180 VAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDAIDTHVEMDGQKYTFIDTAGIRKRS 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K SW+ I+ AD+ +++D+ + + ++ I+++NK D Sbjct: 240 KINETIEKYSTIRSWTAIERADVCLIMIDAEDGVTEQDTKIAGYAHQQGKASIIVVNKWD 299 Query: 142 CV-KPERLLEQAE--IANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + K LE+ + KL F+ +SA G + + + A + S Sbjct: 300 LIEKQTGTLEEYRKVVHEKLGFMTYAPVLFISAKTGQRVNKIYELIKFVADQAAFRISTG 359 Query: 197 QISDL 201 ++DL Sbjct: 360 MLNDL 364 >gi|15594524|ref|NP_212313.1| tRNA modification GTPase TrmE [Borrelia burgdorferi B31] gi|195941910|ref|ZP_03087292.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 80a] gi|216264582|ref|ZP_03436574.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 156a] gi|218249887|ref|YP_002374707.1| tRNA modification GTPase TrmE [Borrelia burgdorferi ZS7] gi|221217543|ref|ZP_03589013.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 72a] gi|223889248|ref|ZP_03623836.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 64b] gi|224532855|ref|ZP_03673470.1| tRNA modification GTPase TrmE [Borrelia burgdorferi WI91-23] gi|225548539|ref|ZP_03769587.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 94a] gi|226320914|ref|ZP_03796465.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 29805] gi|226321497|ref|ZP_03797023.1| tRNA modification GTPase TrmE [Borrelia burgdorferi Bol26] gi|3915895|sp|P53364|MNME_BORBU RecName: Full=tRNA modification GTPase mnmE gi|226704779|sp|B7J1B2|MNME_BORBZ RecName: Full=tRNA modification GTPase mnmE gi|2688058|gb|AAC66556.1| thiophene and furan oxidation protein (thdF) [Borrelia burgdorferi B31] gi|215981055|gb|EEC21862.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 156a] gi|218165075|gb|ACK75136.1| tRNA modification GTPase TrmE [Borrelia burgdorferi ZS7] gi|221192606|gb|EEE18823.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 72a] gi|223885281|gb|EEF56383.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 64b] gi|224512244|gb|EEF82630.1| tRNA modification GTPase TrmE [Borrelia burgdorferi WI91-23] gi|225370802|gb|EEH00237.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 94a] gi|226232686|gb|EEH31439.1| tRNA modification GTPase TrmE [Borrelia burgdorferi Bol26] gi|226233686|gb|EEH32416.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 29805] gi|312149716|gb|ADQ29787.1| tRNA modification GTPase TrmE [Borrelia burgdorferi N40] Length = 464 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 + L G+ NAGKS+L N F+ SIV+ TTR + S + I+F DT G+ Sbjct: 224 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLR 281 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +A + +L I S S IK A +V V+D L + L + K +S+++ +LNKID Sbjct: 282 DADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDF-LFIDSNKSNSKILFVLNKID 340 >gi|18310941|ref|NP_562875.1| GTP binding protein [Clostridium perfringens str. 13] gi|110800879|ref|YP_696639.1| GTP binding protein [Clostridium perfringens ATCC 13124] gi|169343715|ref|ZP_02864714.1| GTP binding protein [Clostridium perfringens C str. JGS1495] gi|18145623|dbj|BAB81665.1| GTP binding protein [Clostridium perfringens str. 13] gi|110675526|gb|ABG84513.1| GTP binding protein [Clostridium perfringens ATCC 13124] gi|169298275|gb|EDS80365.1| GTP binding protein [Clostridium perfringens C str. JGS1495] Length = 597 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 113/263 (42%), Gaps = 41/263 (15%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ------ 55 E+ +I E + + ++ V+LVG TNAGKSTL N S + + + Sbjct: 343 ELKKIKKIRETQRERRSKDKTSQVSLVGYTNAGKSTLRNTLCAESASTLATQAKDKVFEA 402 Query: 56 -----TTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLV 108 T + R I I DT G + H+L+ + + + ++D++C V Sbjct: 403 DMLFATLDTTTRAIKLPDNRDITLTDTVGFVSKLP--HELVEAFKSTLEEVIYSDLLCHV 460 Query: 109 VDSH----RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE----QAEIANKLVF 160 VD+ +E + + +L E+ S IL+LNKID E+L E + I NK+V Sbjct: 461 VDASSDNAQEEIIAVEKVLGELKALESAKILVLNKIDKADEEKLNELEAKYSSIYNKVVK 520 Query: 161 IEKTFMVSATKGHGCDDVLNYLCSTLPLA----PWV--YSADQISDLPMFHFTAEITREK 214 I SA + DD+L + LP ++ Y+A Q+ + H A ++ E+ Sbjct: 521 I------SARERINLDDLLEAISEELPYTLKSKEYIIPYTAQQV--VAYLHRNANVSEEE 572 Query: 215 LFLHLHKEIPYSSCVVTEKWEEK 237 +E Y V E+ E K Sbjct: 573 ----YREEGTYIKAEVDEEVENK 591 >gi|319775992|ref|YP_004138480.1| GTP-binding protein [Haemophilus influenzae F3047] gi|329123858|ref|ZP_08252415.1| ribosome-associated GTPase EngA [Haemophilus aegyptius ATCC 11116] gi|317450583|emb|CBY86800.1| predicted GTP-binding protein [Haemophilus influenzae F3047] gi|327468821|gb|EGF14295.1| ribosome-associated GTPase EngA [Haemophilus aegyptius ATCC 11116] Length = 504 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ + Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGV-RKR 276 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKW 336 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 337 DGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 13/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I ADIV +VD+ L + I + L++ +++ I++ NK Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQ--RQNKTTIVVANKT 122 Query: 141 DCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 123 DGIDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|312148439|gb|ADQ31098.1| tRNA modification GTPase TrmE [Borrelia burgdorferi JD1] Length = 464 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 + L G+ NAGKS+L N F+ SIV+ TTR + S + I+F DT G+ Sbjct: 224 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLR 281 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +A + +L I S S IK A +V V+D L + L + K +S+++ +LNKID Sbjct: 282 DADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDF-LFIDSNKSNSKILFVLNKID 340 >gi|122700891|emb|CAL88034.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKATQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122700853|emb|CAL88015.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAILNALNL 168 >gi|113868332|ref|YP_726821.1| GTPase [Ralstonia eutropha H16] gi|113527108|emb|CAJ93453.1| Predicted GTPase [Ralstonia eutropha H16] Length = 420 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 16/193 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL N A T + R + + +V DT G Sbjct: 203 SISLVGYTNAGKSTLFNALTKAGAYAADQLFATLDTTSRRLFLDGLGNVVLSDTVGFIRD 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ ++ +L EI I+++N Sbjct: 263 LPTQLVAAFRATLDETVHADLLLHVVDASSPVRHEQIE-QVNRVLAEINALDIPQIVVMN 321 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD-------DVLNYLCSTLPLAPW 191 KID PE L + + I +SA +G G D +V +L S P P Sbjct: 322 KIDAA-PELLEQGPRLERDEDGIPTRVFLSAREGMGLDALREAVVEVAQWLASR-PPEPQ 379 Query: 192 VYSADQISDLPMF 204 Y +++D+P + Sbjct: 380 PYDP-RLADVPQY 391 >gi|152965471|ref|YP_001361255.1| small GTP-binding protein [Kineococcus radiotolerans SRS30216] gi|151359988|gb|ABS02991.1| small GTP-binding protein [Kineococcus radiotolerans SRS30216] Length = 530 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V++ G TNAGKS+L+NR GA V + T VR + + DT G Sbjct: 309 AVSIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAQTPEGRPYTLADTVGFV-- 366 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIAKRSSRLILIL 137 + H+L+ R + + +D+V VVD SH + + + +L ++ + ++ + Sbjct: 367 RSLPHQLVEAFRSTLEEVAESDVVLHVVDGSHPDPEGQLAAVRGVLADVDAQDVPELVAI 426 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTLPL 188 NK D P E+ ++L+ EK + VSA G G +++L + LP+ Sbjct: 427 NKADVADP-------EVVDRLLRREKNAVAVSARTGEGIEELLERIARMLPV 471 >gi|297617642|ref|YP_003702801.1| ribosome-associated GTPase EngA [Syntrophothermus lipocalidus DSM 12680] gi|297145479|gb|ADI02236.1| ribosome-associated GTPase EngA [Syntrophothermus lipocalidus DSM 12680] Length = 442 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 7/169 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 VALVG N GKSTL NR G + +IV TR + + + +DT GI F Sbjct: 4 AIVALVGRPNVGKSTLFNRMAGLRKAIVEDTPGVTRDRIYEQAEWAGREFIVVDTGGIRF 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 D + + S I+ AD++ +VVD+ RE +++ I +R+++ ++L NK+ Sbjct: 64 EEGDILAPEVKKQSELAIEEADVIVMVVDA-REGVTPEDEMVAGILRRANKPVVLAANKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + K + L + + + + VSA G D++L+ + + LP A Sbjct: 123 EDFK--KHLGYLDFYR--LGLGEPIPVSAIHGMNTDELLDAVIALLPPA 167 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 14/166 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +ALVG N GKS+L+NR +G + IV+ TTR + ++ V +DT GI Sbjct: 179 IALVGRPNVGKSSLLNRLIGEERVIVSEIPGTTRDAIDTPFRYGGNRYVLIDTAGIRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 K+ + + + ++ +D+V +++D+ E I + E K + I+I+N Sbjct: 239 RIKEPTERYSVLRALRAVERSDVVLIILDATERVTEQDKKIAGFVHEAGKSN---IIIVN 295 Query: 139 KIDCV-KPERLLEQAE--IANKLVFIEKT--FMVSATKGHGCDDVL 179 K D V K ER +++ + I +L F+ + +SA G V+ Sbjct: 296 KWDLVKKTERTMKEFDDLIREELKFLAYSPILYISALTGQRVKQVI 341 >gi|292806522|gb|ADE42391.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQISDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDL 168 >gi|122702175|emb|CAL88278.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDSDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|221066038|ref|ZP_03542143.1| small GTP-binding protein [Comamonas testosteroni KF-1] gi|220711061|gb|EED66429.1| small GTP-binding protein [Comamonas testosteroni KF-1] Length = 446 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR ++ +IV TR G + + + + +DT G + Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A K M + + + AD+V V+D+ L H++ + + IL+ NK + Sbjct: 64 ASRGIFKEMAKQTQQAVAEADVVIFVLDARAGLSGQDHEIGNYLRRLGKPTILVANKAEG 123 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +K +L E E+ + + VSA G G +++ L L Sbjct: 124 MKDGAQLSEFYELG-----LGEVVPVSAAHGQGVRSLVDAALGLLNL 165 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 6/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G NAGKSTL+N ++G + + TTR + + +DT G+ Sbjct: 183 LAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFELIDTAGLRRKG 242 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L++D+ + + + I + ++L +NK D Sbjct: 243 KVFEAIEKFSVVKTLQAIEGANVVLLLIDATQGVTDQDAHIAGYILESGRSVVLAINKWD 302 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCD 176 V +R + + I +L F++ +SA K G + Sbjct: 303 AVDDYQRQMLERSIETRLSFLKFAPLHFISAQKRQGLE 340 >gi|145347727|ref|XP_001418313.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578542|gb|ABO96606.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 525 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 VA+VG N GKS L+N ++ SIVT + TTR +V V+ LDT GI + Sbjct: 282 VAIVGRPNVGKSRLLNALTRSERSIVTSREGTTRDVVEASVNIGGLPATLLDTAGIRSET 341 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILILNK 139 D K+ + S + ADIV LVVD+ R E + A+ +L++NK Sbjct: 342 DDEVEKIGVERSRAAAAGADIVVLVVDAERGWVSEDSAIWQSEIANNARARGSSVLVVNK 401 Query: 140 ID 141 D Sbjct: 402 TD 403 >gi|122702513|emb|CAL88447.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR V +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLVRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122702251|emb|CAL88316.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|319898104|ref|YP_004136301.1| gtp-binding protein [Haemophilus influenzae F3031] gi|309750447|gb|ADO80431.1| GTP-binding protein EngA [Haemophilus influenzae R2866] gi|317433610|emb|CBY81994.1| predicted GTP-binding protein [Haemophilus influenzae F3031] Length = 504 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ + Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGV-RKR 276 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKW 336 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 337 DGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 13/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I ADIV +VD+ L + I + L++ +++ I++ NK Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQ--RQNKTTIVVANKT 122 Query: 141 DCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 123 DGIDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|264679419|ref|YP_003279326.1| small GTP-binding protein [Comamonas testosteroni CNB-2] gi|262209932|gb|ACY34030.1| small GTP-binding protein [Comamonas testosteroni CNB-2] Length = 446 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR ++ +IV TR G + + + + +DT G + Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A K M + + + AD+V V+D+ L H++ + + IL+ NK + Sbjct: 64 ASRGIFKEMAKQTQQAVAEADVVIFVLDARAGLSGQDHEIGNYLRRLGKPTILVANKAEG 123 Query: 143 VKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +K +L E E+ + + VSA G G +++ L L Sbjct: 124 MKDGVQLSEFYELG-----LGEVVPVSAAHGQGVRSLVDAALGLLNL 165 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 80/172 (46%), Gaps = 6/172 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E + F +++ + +A+ G NAGKSTL+N ++G + + TTR + Sbjct: 169 EDEVFGEEDQKPVRLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQ 228 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +DT G+ ++ K + + I+ A++V L++D+ + + + I Sbjct: 229 KFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIEGANVVLLLIDATQGVTDQDAHIAGYIL 288 Query: 128 KRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCD 176 + ++L +NK D V +R + + I +L F++ +SA K G + Sbjct: 289 ESGRSVVLGINKWDAVDDYQRQMLERSIETRLSFLKFAPLHFISAQKRQGLE 340 >gi|297565398|ref|YP_003684370.1| ribosome-associated GTPase EngA [Meiothermus silvanus DSM 9946] gi|296849847|gb|ADH62862.1| ribosome-associated GTPase EngA [Meiothermus silvanus DSM 9946] Length = 437 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 11/167 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L NR +G + ++V + TR + V + + +DT G+++ Sbjct: 4 VVIVGRPNVGKSSLFNRLLGKRHAVVADQPGVTRDLKEATVESERGRFKLVDTGGLWSG- 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILNKID 141 D + + + + ++ AD+V VD ++ + + D L+ ++ S ++L+ K+D Sbjct: 63 DVWEQKIKEKVEAALEDADLVLFTVDGRADISPADLEVADFLR---RKHSNVLLVATKVD 119 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K E L L F E S++ G D++ + + S LP+ Sbjct: 120 DPKHENYLGDLW---ALGFGEPV-PTSSSHARGLDELEDKIWSKLPV 162 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 10/125 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKS+L+N +G + IV+ + TTR + + +DT GI Sbjct: 177 IAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDSIDVEFDYGGTLFQLVDTAGIRKRP 236 Query: 85 DSY-HKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++ +L I + +I+ ADIV LV+D RELK L E + +IL + K Sbjct: 237 ETLVEELAIARAHKSIEEADIVFLVIDPANFGDRELK-----LANEALEAGKPVILTVTK 291 Query: 140 IDCVK 144 D VK Sbjct: 292 WDLVK 296 >gi|239624142|ref|ZP_04667173.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520528|gb|EEQ60394.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 459 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N +G + +IVT TTR + + + + +DT GI + +D Sbjct: 227 ILGKPNAGKSSLMNVLLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDV 286 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + AD++ VVD R L + +++ I R S I++LNK D Sbjct: 287 VEKIGVDRARRAAGDADLIIFVVDGSRPLDESDREIMDFIRGRKS--IILLNKSDL 340 >gi|197335585|ref|YP_002155746.1| GTP-binding protein HflX [Vibrio fischeri MJ11] gi|197317075|gb|ACH66522.1| GTP-binding protein HflX [Vibrio fischeri MJ11] Length = 452 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 10/131 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CVALVG TNAGKS+++ G++V + T + VR + E + +I+ DT G Sbjct: 226 CVALVGYTNAGKSSMMRALTGSEVLVENKLFATLDTTVRALYPETQPRILVSDTVGFI-- 283 Query: 84 KDSYHKLMIRL--SWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 K H L+ + + A ++ VVD+ +L V +H++L E+ +L+ Sbjct: 284 KKLPHDLVASFHSTLAEAHDASLLLYVVDASDPTFRTQLDV-VHEVLGEVGVDGIDKLLV 342 Query: 137 LNKIDCVKPER 147 LNK D + PE+ Sbjct: 343 LNKSDQLTPEQ 353 >gi|122702833|emb|CAL88606.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALDL 168 >gi|325661996|ref|ZP_08150615.1| GTP-binding protein engA [Lachnospiraceae bacterium 4_1_37FAA] gi|331085846|ref|ZP_08334929.1| GTP-binding protein engA [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471659|gb|EGC74878.1| GTP-binding protein engA [Lachnospiraceae bacterium 4_1_37FAA] gi|330406769|gb|EGG86274.1| GTP-binding protein engA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 442 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + V+ + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVTWLDREFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +KD M + I AD++ + D + L+ + + + + ++L++NK+D Sbjct: 65 SKDIILAQMREQAQIAIDTADVIIFITDVRQGLQDSDSKVADMLRRSGKPVVLVVNKVDS 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + + E N + I +SA+ G D+L+ + + P Sbjct: 125 FQ-KLMADVYEFYN--LGIGDPIPISASSRLGLGDMLDAVAAHFP 166 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 4/139 (2%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F EH +++ R +A+VG N GKS+++N+ VG IV++ TTR + ++ Sbjct: 165 FPEHSAEEEEDERP-RIAIVGKPNVGKSSIINKLVGENRVIVSNIAGTTRDAIDTEITWN 223 Query: 69 ESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 + VF+DT G+ K+ + I + + ++ AD+V +V+D+ + + Sbjct: 224 GKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDAVEGVTEQDAKIAGI 283 Query: 126 IAKRSSRLILILNKIDCVK 144 +R +I+I+NK D ++ Sbjct: 284 AHERGKGVIIIVNKWDAIE 302 >gi|91774320|ref|YP_567012.1| small GTP-binding protein [Methanococcoides burtonii DSM 6242] gi|91713335|gb|ABE53262.1| GTP-binding domain protein [Methanococcoides burtonii DSM 6242] Length = 413 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 18/173 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSI----VTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 VAL G TNAGKSTL V V + T TTRS+ S K+ +++ DT G Sbjct: 193 VALAGYTNAGKSTLFQSLVKEGVEVEDMLFTTLSPTTRSL-----SIKQRRVLLTDTVGF 247 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLLKEIAKRSSRLI 134 + R + I AD++ LVVD R+ V HD+ + + + ++ Sbjct: 248 IEDLPHWMVDAFRSTLDEIFLADVILLVVDMSDPLDVIRQKLVVSHDIFWKRTE-GAEIV 306 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +LNK D V P+ L + + + L +VSA+ G G + +L+ + LP Sbjct: 307 AVLNKADMVDPDDLERKVDAISYLA--PHLVLVSASSGDGFEVLLDTIYENLP 357 >gi|292806688|gb|ADE42474.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|302345898|ref|YP_003814251.1| ribosome-associated GTPase EngA [Prevotella melaninogenica ATCC 25845] gi|302149910|gb|ADK96172.1| ribosome-associated GTPase EngA [Prevotella melaninogenica ATCC 25845] Length = 437 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++D+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VSEDLEFYSVMRSIRSIENSDVCILMLDATRGIEAQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 8/184 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + + AD+V VVD+ + D+ + + ++L+ NK+ Sbjct: 62 VKSDDIFEDAIRKQVLVATEEADLVLFVVDTETGITDWDEDVALILRRTKLPVLLVANKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + AE + + + +SA G G D+L+ L L P + DQ D Sbjct: 122 D--NSGEYYQAAEFYK--LGLGEPICISAATGGGTGDLLDILLENLKDVP-EEAVDQ--D 174 Query: 201 LPMF 204 +P F Sbjct: 175 IPRF 178 >gi|122701689|emb|CAL88234.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILSALNL 168 >gi|170724368|ref|YP_001752056.1| tRNA modification GTPase TrmE [Pseudomonas putida W619] gi|205415795|sp|B1JFV3|MNME_PSEPW RecName: Full=tRNA modification GTPase mnmE gi|169762371|gb|ACA75687.1| tRNA modification GTPase TrmE [Pseudomonas putida W619] Length = 456 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N+ G + +IVT TTR I+R + + +DT G+ + Sbjct: 219 VVIAGRPNAGKSSLLNQLAGREAAIVTAIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ + + I AD V LVVDS + L E + ++ LI NK D Sbjct: 279 DHVEKIGVERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDPGKVTLIRNKAD 338 Query: 142 CVKPERLLEQ 151 LEQ Sbjct: 339 LSGEPVGLEQ 348 >gi|297617726|ref|YP_003702885.1| small GTP-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297145563|gb|ADI02320.1| small GTP-binding protein [Syntrophothermus lipocalidus DSM 12680] Length = 595 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 17/165 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 V LVG N GKS +++R GA+V IV++ T+ + RG V + I +DTPGI+ Sbjct: 3 VVLVGQPNVGKSAILHRLTGAEV-IVSNYAGTSVELTRGNVRLGKKNIEIIDTPGIYSSL 61 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 +A+++ K ++ + + ++V VVD+ L N+ L E+ + L+++LN Sbjct: 62 AAVSAEETITKELL-----SKESVNLVINVVDAT-SLARNLA-LTLELLGTAKPLLVLLN 114 Query: 139 KIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 ++D V+ + + + AE+A L F SA G G +V +YL Sbjct: 115 QMDRVRSKGMVIRHAELARWLGVTVIPF--SAVTGEGVAEVFDYL 157 >gi|242255906|gb|ACS88937.1| GTPase [Helicobacter pylori] gi|242255908|gb|ACS88938.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGIGALIDAILSALDL 168 >gi|281421766|ref|ZP_06252765.1| ribosome-associated GTPase EngA [Prevotella copri DSM 18205] gi|281404261|gb|EFB34941.1| ribosome-associated GTPase EngA [Prevotella copri DSM 18205] Length = 437 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 9/140 (6%) Query: 14 DFVQDNSRSGC------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 D +QDN A+VG NAGKS+++N F+G +IVT TTR + + Sbjct: 161 DKLQDNPEEAIEEDIPRFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDK 220 Query: 68 KESQIVFLDTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 +DT GI L + S I+++D+ L++D+ R ++ ++ + Sbjct: 221 FGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRAIENSDVCILMLDATRGIETQDMNIFQ 280 Query: 125 EIAKRSSRLILILNKIDCVK 144 I K + L++++NK D V+ Sbjct: 281 LIQKNNKSLVVVVNKWDLVE 300 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 5/170 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR ++ +IV+ TTR G S + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + + AD+V +VD + L D+ + + +IL+ NK+ Sbjct: 62 VKSDDIFEDAIRKQVLVATEEADLVLFLVDVNTGLTDWDEDVALILRRAKLPVILVANKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D + AE KL + +SA G G D+L+ + L P Sbjct: 122 D--NSAEYYQAAEFY-KLGLGDPQ-CISAATGGGTGDLLDMILDKLQDNP 167 >gi|122700677|emb|CAL87927.1| GTPase [Helicobacter pylori] gi|122701411|emb|CAL88095.1| GTPase [Helicobacter pylori] gi|122701429|emb|CAL88104.1| GTPase [Helicobacter pylori] gi|122701497|emb|CAL88138.1| GTPase [Helicobacter pylori] gi|122701601|emb|CAL88190.1| GTPase [Helicobacter pylori] gi|122702695|emb|CAL88537.1| GTPase [Helicobacter pylori] gi|122702873|emb|CAL88626.1| GTPase [Helicobacter pylori] gi|242255826|gb|ACS88897.1| GTPase [Helicobacter pylori] gi|242255930|gb|ACS88949.1| GTPase [Helicobacter pylori] gi|292806510|gb|ADE42385.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806520|gb|ADE42390.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806586|gb|ADE42423.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806646|gb|ADE42453.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|294012710|ref|YP_003546170.1| putative GTP-binding protein [Sphingobium japonicum UT26S] gi|292676040|dbj|BAI97558.1| putative GTP-binding protein [Sphingobium japonicum UT26S] Length = 363 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 17/173 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG NAGKST +N+ K + + TT+ + G+V ++ + V D PG+ Sbjct: 177 VGLVGMPNAGKSTFINQVTNTKAKVGAYAFTTTKPQL-GVVLHRDREFVLADIPGLIEGA 235 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK-EIAKRSSRL-----ILILN 138 + R ++ ++ ++D+ + V +++ E+A L I+ LN Sbjct: 236 AEGAGIGDRF-LGHVERCRVLLHLIDATGDDPVEQFRIVQDELAAYGGGLDEKPQIVALN 294 Query: 139 KIDCVKPERLLEQAEIANKL---VFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K D + PE L+E +IA +L +E F++S G G +L+ + LPL Sbjct: 295 KGDLLGPE-LME--DIAGQLRDEAGVEDVFIISGATGEGVPALLD---AVLPL 341 >gi|225552070|ref|ZP_03773010.1| tRNA modification GTPase TrmE [Borrelia sp. SV1] gi|225371068|gb|EEH00498.1| tRNA modification GTPase TrmE [Borrelia sp. SV1] Length = 464 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 + L G+ NAGKS+L N F+ SIV+ TTR + S + I+F DT G+ Sbjct: 224 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLR 281 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +A + +L I S S IK A +V V+D L + L + K +S+++ +LNKID Sbjct: 282 DADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDF-LFIDSNKSNSKILFVLNKID 340 >gi|172036839|ref|YP_001803340.1| hypothetical protein cce_1924 [Cyanothece sp. ATCC 51142] gi|171698293|gb|ACB51274.1| unknown [Cyanothece sp. ATCC 51142] Length = 803 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 21/192 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A +G T AGKSTL G + Q T + R V E S I +DTPGI Sbjct: 244 TIAFMGRTKAGKSTLHAVMTGEGWEAIGVGKQRTTRLNR--VYEL-SDIRIIDTPGIGAP 300 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVV--DSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + ++ S I AD++C VV DS +E + + LK++ ++S LI++LN D Sbjct: 301 GGKSDE---EIAQSVIDEADVICYVVTNDSIQETEF---EFLKQLKEKSKPLIVLLNLKD 354 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 VK R L++ L +K F K G D + ++ A YS D + Sbjct: 355 NVKDSRRLQRF-----LKNPDKLF-----KKEGNDGIAGHISRIRRYAKEHYSNDYFPII 404 Query: 202 PMFHFTAEITRE 213 P+ A+I++E Sbjct: 405 PVMLLAAQISKE 416 >gi|148827277|ref|YP_001292030.1| GTP-binding protein EngA [Haemophilus influenzae PittGG] gi|148718519|gb|ABQ99646.1| GTP-binding protein EngA [Haemophilus influenzae PittGG] Length = 504 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ + Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGV-RKR 276 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKW 336 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 337 DGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 9/176 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I ADIV +VD+ L + + +R +++ +L+ NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVLVANKTDG 124 Query: 143 VKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 125 IDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|15604593|ref|NP_221111.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. Madrid E] gi|6647889|sp|Q9ZCI1|MNME_RICPR RecName: Full=tRNA modification GTPase mnmE gi|3861288|emb|CAA15187.1| POSSIBLE THIOPHENE AND FURAN OXIDATION PROTEIN THDF (thdF) [Rickettsia prowazekii] gi|292572404|gb|ADE30319.1| tRNA modification GTPase TrmE [Rickettsia prowazekii Rp22] Length = 445 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 79/145 (54%), Gaps = 10/145 (6%) Query: 10 NEHKDFVQDNSRSGCV------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 NE +++ DN R + A++G N GKS+L+N + ++IV++ TTR I+ G Sbjct: 197 NEISNYLNDNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQRNIAIVSNIAGTTRDIIEG 256 Query: 64 IVSEKESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + I+ DT GI + D + I+ + ++ K A+I ++ D+ + L +I++ Sbjct: 257 HLDIGGYPIILQDTAGIRTESTDIIEQEGIKRAINSAKTANIKIVMFDAEK-LDSSINND 315 Query: 123 LKEIAKRSSRLILILNKIDCVKPER 147 + + ++ I+I+NKID ++P + Sbjct: 316 ITGLIDENT--IVIINKIDLIEPNK 338 >gi|317453517|emb|CBL87868.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|302342246|ref|YP_003806775.1| ribosome-associated GTPase EngA [Desulfarculus baarsii DSM 2075] gi|301638859|gb|ADK84181.1| ribosome-associated GTPase EngA [Desulfarculus baarsii DSM 2075] Length = 479 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 13/171 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S +A+VG N GKSTL NR + ++V TR + G + Q+ +DT G Sbjct: 2 SAIMAIVGRPNVGKSTLFNRLTRTRQALVHDLPGVTRDRLYGRAIIDDRQVTVIDTGGFD 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILI 136 D + + ++ AD++ V D L N DL EIA R R +I Sbjct: 62 PPADQPFAAEVHAQIAMAMEEADLILFVCDGRAGL--NPADL--EIATRLRRSQKPVIHA 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +NKID P + E +E + +EK +SA G+G D+ + + + LP Sbjct: 118 VNKIDG--PRQEDEASEFF--ALGVEKLHFISAAHGYGMSDLADDILAHLP 164 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VAL+G N GKS+L+N G +V+ TTR V + + + V +DT GI Sbjct: 211 VALIGRPNVGKSSLLNALFGGPRVVVSDVPGTTRDAVDTPIQVGDKKYVIIDTAGIRRRG 270 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K + S I A +V ++++ + L+ +++ LI+++NK D Sbjct: 271 KVAPGIEKAGVFRSLRAIDRAHVVVAMMEAGEGVTDQDLHLIGAAMEQNRALIVVMNKWD 330 Query: 142 CVK-PERLLEQ--AEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + ER +Q A + L F +S KG G D +L Sbjct: 331 LLAGDERRRKQLDARLEEALRFAPWAPVLRLSVLKGRGVDKIL 373 >gi|241204548|ref|YP_002975644.1| GTP-binding proten HflX [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858438|gb|ACS56105.1| GTP-binding proten HflX [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 441 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 35/198 (17%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD---------SHRELKVNIHDLLKEIAKRSSRLI 134 ++ R + + AD++ V D S +++ ++DL + A+ RLI Sbjct: 264 LPTHLVAAFRATLEEVLEADLILHVRDMSDADNQAQSSDVMRI-LNDLGIDEAEAEKRLI 322 Query: 135 LILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC-------- 183 + NKID ++PE +++++ A+ +V VSA G G D ++ + Sbjct: 323 EVWNKIDRLEPEVHDTMVQKSAGASNVV------AVSAVSGEGVDTLMEEISRRLSGVMT 376 Query: 184 --------STLPLAPWVY 193 L L PW+Y Sbjct: 377 VATIRLPVDKLALLPWLY 394 >gi|148825596|ref|YP_001290349.1| GTP-binding protein EngA [Haemophilus influenzae PittEE] gi|229847254|ref|ZP_04467357.1| GTP-binding protein EngA [Haemophilus influenzae 7P49H1] gi|148715756|gb|ABQ97966.1| GTP-binding protein EngA [Haemophilus influenzae PittEE] gi|229809797|gb|EEP45520.1| GTP-binding protein EngA [Haemophilus influenzae 7P49H1] Length = 504 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ + Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGV-RKR 276 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKW 336 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 337 DGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 1/124 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I ADIV +VD+ L + + +R +++ +L+ NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVLVANKTDG 124 Query: 143 VKPE 146 + + Sbjct: 125 IDAD 128 >gi|126668584|ref|ZP_01739538.1| GTP-binding protein EngA [Marinobacter sp. ELB17] gi|126626989|gb|EAZ97632.1| GTP-binding protein EngA [Marinobacter sp. ELB17] Length = 474 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 4/162 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V TR G + + + + +DT G+ Sbjct: 4 VIALVGRPNVGKSTLFNQMTRSRDALVADFPGLTRDRKYGEGNYENQRFIVIDTGGLMGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M + S ++ ADIV +VD + L ++ + ++ L++NK D Sbjct: 64 ELGLDAAMAKQSLQAVEEADIVLFIVDGRAGVMPGDQVLADQLRRSGTQAHLVINKTDGQ 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 P + A L F + F ++A+ G +L L T Sbjct: 124 DPNLV---ASDFYALGF-QSQFRIAASHNRGVRSMLEILLPT 161 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 8/175 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 + +VG N GKSTLVNR +G + +V TTR + + +DT G+ Sbjct: 179 IGIVGRPNVGKSTLVNRMLGEERVVVYDLPGTTRDSIYIPYERLGQEYTLIDTAGVRRRK 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N ++ K I + I A +V LV+D+ L L+ + L++ +NK D Sbjct: 239 NVREVVEKFSIIKTLQAIDDAHVVILVIDAREGLVDQDMHLMGFVLSAGRSLVIAINKWD 298 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYL--CSTLPLAPW 191 + E R + +I +L F++ +SA G G + + C +A W Sbjct: 299 GMNGEDRDKVKEQIRRRLDFLDYADKHYISALHGSGVGVMYQSVNACYESAMAKW 353 >gi|122700769|emb|CAL87973.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALNL 168 >gi|116253295|ref|YP_769133.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. viciae 3841] gi|166225846|sp|Q1MDD6|DER_RHIL3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115257943|emb|CAK09041.1| putative engA GTP-binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 473 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V TR G +DT G+ A Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEEA 63 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +S M + + I AD+ VVD+ L DL + + +R ++L+ NK Sbjct: 64 DAESLQGRMRAQTEAAIDEADLSLFVVDAKSGLTPVDTDLAEMLRRRGKPVVLVANK 120 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 22/191 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 +E ++ + D+++ VA+VG NAGKSTL+NRF+G + + TR + + Sbjct: 190 DEDEEPIYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 249 Query: 70 SQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I DT G+ + KL + + I+ A+ V +V D+ + ++ + Sbjct: 250 RTIKMFDTAGMRRKARVIEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLV 309 Query: 127 AKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + +L NK D + K +RLL QA + +S G G Sbjct: 310 LREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGI-------RAVPISGQTGWG 362 Query: 175 CDDVLNYLCST 185 D ++ + T Sbjct: 363 LDKLMQAIIDT 373 >gi|310659884|ref|YP_003937605.1| GTPase [Clostridium sticklandii DSM 519] gi|308826662|emb|CBH22700.1| GTPase [Clostridium sticklandii] Length = 459 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N + +IVT TTR I+ V+ + +DT G Sbjct: 219 RDGLKTVIVGKPNVGKSSLLNAILKESRAIVTEIEGTTRDIIEEYVNIGGIPLKIVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ ++ S + + AD+V +++DS R L D+L + + + I+++NK Sbjct: 279 IRETDDLVEKIGVQKSKESFESADLVIMMLDSSRHLSNQDQDILSLLGDK--KAIILVNK 336 Query: 140 ID 141 D Sbjct: 337 TD 338 >gi|301168789|emb|CBW28380.1| predicted GTP-binding protein [Haemophilus influenzae 10810] Length = 503 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ + Sbjct: 217 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGV-RKR 275 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 276 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKW 335 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 336 DGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 388 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 9/176 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I ADIV +VD+ L + + +R +++ +++ NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 143 VKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 125 IDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|300854433|ref|YP_003779417.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528] gi|300434548|gb|ADK14315.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528] Length = 438 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ G ++SIV TR V + +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRVYAEAEWLKYNFTIIDTGGIEPES 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M R + ++ AD + +VD + ++ + + K ++L++NKID + Sbjct: 66 TDVIISQMRRQAQVAVETADTIIFIVDGKEGVTAADREVAQMLRKSKKPVVLVVNKIDNI 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + E N + I + +SA++ G D+L+ Sbjct: 126 NQNAYV--YEFYN--LGIGEPMAISASQALGLGDMLD 158 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA +G N GKS+L+N+ +G + IV+ TTR V + +++ +DT G+ Sbjct: 179 VAFIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDAVDSYLETDYGKLLLIDTAGLRKKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + +++ I+ AD+ L++D+ + ++ + S +++I+NK D Sbjct: 239 KVKEEIERYSVIRTYTAIERADVCVLILDAVHNISEQDEKIIGYAHELSKSIMVIINKWD 298 Query: 142 CV-KPERLLE--QAEIANKLVFIEKT--FMVSATKGHGCDDVL 179 + K + ++ + EI L F+ +SA G + VL Sbjct: 299 LIDKDTKTVDKYKTEIGTSLSFMPYAPYLFISAKTGQRVNKVL 341 >gi|242255888|gb|ACS88928.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + EQA A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEK---EQA-YAFSSFGMPKSFNISVSHNRGISTLIDAILNALNL 168 >gi|240122615|ref|ZP_04735571.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID332] gi|268681207|ref|ZP_06148069.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID332] gi|268621491|gb|EEZ53891.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID332] Length = 448 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +VSIVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVSIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|254516810|ref|ZP_05128868.1| GTP-binding proten HflX [gamma proteobacterium NOR5-3] gi|219674315|gb|EED30683.1| GTP-binding proten HflX [gamma proteobacterium NOR5-3] Length = 439 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N G+KV T +R + + +V DT G F A Sbjct: 219 TVALVGYTNAGKSTLFNTLTGSKVYAADQLFATLDPTLRRLEVDNLGPVVLADTVG-FIA 277 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILIL 137 + H L+ + + + AD++ VVD+ + + + +H +L+EI ++ I Sbjct: 278 R-LPHGLVEAFKATLEETREADLLLHVVDAASDDRDDNRREVHAVLEEIGADERPVLEIY 336 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ + +++ + +SA KG G D VL L L Sbjct: 337 NKIDLLEMQPRIDRDDEGRPC-----RVWISAQKGLGLDLVLEALAERL 380 >gi|241205814|ref|YP_002976910.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859704|gb|ACS57371.1| small GTP-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 474 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V TR G +DT G+ A Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEEA 63 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +S M + + I AD+ VVD+ L DL + + +R ++L+ NK Sbjct: 64 DAESLQGRMRAQTEAAIDEADLSLFVVDAKSGLTPVDTDLAEMLRRRGKPVVLVANK 120 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 24/197 (12%) Query: 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 GE + +E + D ++ VA+VG NAGKSTL+NRF+G + + TR + Sbjct: 187 GEDSDADEEPAY--DETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISV 244 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + I DT G+ + KL + + I+ A+ V +V D+ + Sbjct: 245 EWDWRGRTIKMFDTAGMRRKARVIEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDL 304 Query: 121 DLLKEIAKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVS 168 ++ + + +L NK D + K +RLL QA + +S Sbjct: 305 QIVDLVLREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGI-------RAVPIS 357 Query: 169 ATKGHGCDDVLNYLCST 185 G G D ++ + T Sbjct: 358 GQTGWGLDKLMQAIIDT 374 >gi|122700637|emb|CAL87907.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAARMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|331268194|ref|YP_004394686.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925] gi|329124744|gb|AEB74689.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925] Length = 462 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+++N + +IVT TTR ++ +S + I +DT GI D Sbjct: 231 IVGKPNVGKSSILNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDI 290 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I ++D+ LV+DS R+L +++ I + + I++LNKID Sbjct: 291 VEKIGVEKSREKILNSDLTVLVLDSSRQLDAEDKEIIDFI--KDKKYIVLLNKIDL 344 >gi|308235717|ref|ZP_07666454.1| bifunctional cytidylate kinase/GTP-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114732|ref|YP_003985953.1| ribosome-associated GTPase EngA [Gardnerella vaginalis ATCC 14019] gi|310946226|gb|ADP38930.1| ribosome-associated GTPase EngA [Gardnerella vaginalis ATCC 14019] Length = 734 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 4/176 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D +D G +A++G N GKSTLVNR +G +V++V TR V + Sbjct: 289 DESKDTKAVGVIAVIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFK 348 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +DT G + + + + ++ +D V +VD L ++ + + Sbjct: 349 LVDTGGWEADVEGIDSSIAQQAQVAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKPI 408 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 L +NK+D + E L AE KL E + +SA G G D+L+ ++L A Sbjct: 409 TLAVNKVDDARSEYLT--AEFW-KLGMGEP-YGISAMHGRGVGDLLDAALNSLKKA 460 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N + S+V TTR V +V +F+DT GI K Sbjct: 475 VALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWLFIDTAGI---K 531 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ DS + + ++ + ++L+ N Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALILFDSSQPIAEQDLKVMSQAVDAGRAIVLVFN 591 Query: 139 KIDCV 143 K D + Sbjct: 592 KWDLM 596 >gi|122702127|emb|CAL88254.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122700797|emb|CAL87987.1| GTPase [Helicobacter pylori] gi|122700865|emb|CAL88021.1| GTPase [Helicobacter pylori] gi|122701331|emb|CAL88055.1| GTPase [Helicobacter pylori] gi|122702441|emb|CAL88411.1| GTPase [Helicobacter pylori] gi|122702529|emb|CAL88454.1| GTPase [Helicobacter pylori] gi|292806614|gb|ADE42437.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|62260919|gb|AAX77946.1| unknown protein [synthetic construct] Length = 485 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 245 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 304 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-------AKRSSRLILILNK 139 I+ + I+ AD V V D + +V D +KEI + + + NK Sbjct: 305 IESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSD-IKEIIPEFYDQIPKDIDITYVHNK 363 Query: 140 IDCVK 144 ID +K Sbjct: 364 IDLLK 368 >gi|87122923|ref|ZP_01078788.1| tRNA modification GTPase [Marinomonas sp. MED121] gi|86161796|gb|EAQ63096.1| tRNA modification GTPase [Marinomonas sp. MED121] Length = 460 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 49/87 (56%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT+ TTR ++R + + +DT G+ ++ Sbjct: 224 VVIAGRPNAGKSSLLNALSGKDSAIVTNIEGTTRDVLREQIHIDGMPLHIIDTAGLRDSP 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I+ +W I AD + L+VDS Sbjct: 284 DEVEQIGIQRAWQEIHKADRILLMVDS 310 >gi|122879374|ref|YP_203273.6| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae KACC10331] gi|205829214|sp|Q5GTT5|MNME_XANOR RecName: Full=tRNA modification GTPase mnmE Length = 446 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 18/172 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G++ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + +R + + ++ AD+ +V+D+ + + I D + + R + I NK D + Sbjct: 281 IEREGMRRARAELERADLALVVLDARDPQAARAAIGDAIDAV----PRQLWIHNKCDLLS 336 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 L+ IA VSA G G + L+ L L V S D Sbjct: 337 DAAPLDVNAIA-----------VSAVTGQGLEQ-LHIRLRELALGDGVESVD 376 >gi|332703119|ref|ZP_08423207.1| GTPase obg [Desulfovibrio africanus str. Walvis Bay] gi|332553268|gb|EGJ50312.1| GTPase obg [Desulfovibrio africanus str. Walvis Bay] Length = 414 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 28/222 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G NAGKST + A+ I + T + I +K Q+V D PG+ Sbjct: 165 VGLLGLPNAGKSTFIAAVSAARPKIAPYPFTTLSPNLGVIEDDKGRQLVIADIPGLIEGA 224 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD---------LLKEIAKRSSRL-- 133 L R +KH + +V +V++ D L +E+A L Sbjct: 225 SEGQGLGHRF----LKHVERTRFLVHILSVEEVHLEDENPLVGFELLDEELAAYDPELGR 280 Query: 134 ---ILILNKIDCVKPERL--LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + +LNKID E+L L+QA A E+ F+VSA +G G +++L+ + Sbjct: 281 KPQVRVLNKIDLWSEEQLLALKQATKARG----EQVFLVSALRGDGLEELLDEIWRRA-Q 335 Query: 189 APWVYSADQISDL--PMFHFTAEITREKLFLHLHKEIPYSSC 228 A W +A++ + L P + A E +E+P+ C Sbjct: 336 AEWARAAERPAPLVQPAWRAAAS-GEESTGEDEREELPWVEC 376 >gi|302561447|ref|ZP_07313789.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000] gi|302479065|gb|EFL42158.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000] Length = 496 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 60 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 119 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ +++ + K ++L NK+D Sbjct: 120 VLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDG- 178 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P + A + + + + + + VSA G G D+L+ + LP AP Sbjct: 179 -PSGEADAAYLWS--LGLGEPYPVSALHGRGTGDMLDQVLEALPEAP 222 Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VAL+G N GKS+L+N+ G + +V TTR V ++ F+DT GI Sbjct: 236 VALIGRPNVGKSSLLNKVAGEERVVVNELAGTTRDPVDEMIELGGKTWKFVDTAGIRKRV 295 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++D+ + V ++ + L+L N Sbjct: 296 HLQQGADYYASLR---TAAAVEKAEVAVVLIDAADSISVQDQRIVTMAVEAGRALVLAYN 352 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 353 KWDTLDEER 361 >gi|320008150|gb|ADW03000.1| GTP-binding proten HflX [Streptomyces flavogriseus ATCC 33331] Length = 503 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 12/191 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + ++ VA+ G TNAGKS+L+NR GA V + T V Sbjct: 261 EIAEMKTGREIKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 320 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKV 117 R + DT G + R + + +D++ VVD E Sbjct: 321 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGAHPVPEEQLA 380 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + +++E+ I+++NK D P + +L+ EK VSA G G D Sbjct: 381 AVRQVIREVGAVDVPEIVVINKADAADP-------LVLQRLLRTEKHAIAVSARTGAGID 433 Query: 177 DVLNYLCSTLP 187 ++L + + LP Sbjct: 434 ELLALIDAELP 444 >gi|122700901|emb|CAL88039.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLRALNL 168 >gi|18075581|emb|CAD11186.1| GTP-binding protein [Helicobacter pylori] gi|122702305|emb|CAL88343.1| GTPase [Helicobacter pylori] gi|122702307|emb|CAL88344.1| GTPase [Helicobacter pylori] gi|122702321|emb|CAL88351.1| GTPase [Helicobacter pylori] gi|122702353|emb|CAL88367.1| GTPase [Helicobacter pylori] gi|122702799|emb|CAL88589.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|331091761|ref|ZP_08340593.1| hypothetical protein HMPREF9477_01236 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402660|gb|EGG82227.1| hypothetical protein HMPREF9477_01236 [Lachnospiraceae bacterium 2_1_46FAA] Length = 399 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 11/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G N GKS+L+N G +SIV+ K TT +++ + +VF+DT G+ + Sbjct: 14 IGIFGRRNCGKSSLINALTGQALSIVSDTKGTTTDPVLKAMELLPIGPVVFIDTAGL-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + +L I ++ + DI LV+DS + V ++LK+I + ++I NK C Sbjct: 73 EGELGQLRITKTYQMLNKTDIALLVIDSSVGMTVEDENILKKIQDKQIPYLIIHNK--CD 130 Query: 144 KPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE+ L AE E T +SA G ++ + + LP Sbjct: 131 LPEKSTLSLAE------HTEHTIEISAKTGFHIRELKEKISTLLP 169 >gi|292806482|gb|ADE42371.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLNALDL 168 >gi|254796894|ref|YP_003081731.1| putative GTP-binding protein EngA [Neorickettsia risticii str. Illinois] gi|254590130|gb|ACT69492.1| putative GTP-binding protein EngA [Neorickettsia risticii str. Illinois] Length = 480 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 21/168 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS-IVRGIVSEKESQIVFLDTPGIFNA 83 V++VG N GKSTL N+ K SI + TR +VR I + + LDT G FN Sbjct: 14 VSIVGKANVGKSTLFNKMAREKRSITMDRKGVTRDVVVRKISLNEGKSFLLLDTAG-FNP 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR----SSRLILILNK 139 + H + + IK +D++ V+D+ K++ D+L R +S+++L+ NK Sbjct: 73 Q---HPETVERTEYAIKESDMILFVIDN----KIDSEDMLFASWLRRNAGNSKIVLVCNK 125 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + L + F++SA G ++++Y+ S +P Sbjct: 126 SD--------RKDRDDCSLFGFQNVFLISAEHSLGLSELISYIESFIP 165 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 7/149 (4%) Query: 7 TFFNEHKDFVQDNS---RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 +F E D +++S R V+++G N GKS+L+N+F+G +V TTR + Sbjct: 162 SFIPEQLDIPENDSEKQRRIRVSILGQPNVGKSSLMNKFIGKDRVLVLPIAGTTRDPISD 221 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI 119 K + +DT G+ + D K+ + T +D+V + D S+ L+ Sbjct: 222 EFQWKCTTFELVDTAGLRKKQRVTDGLEKICNSRALRTSAESDVVIFMCDISNFTLERQD 281 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERL 148 L+ +I ++ +IL+ NK D V L Sbjct: 282 FLLMNKILEQGKPMILVGNKKDAVNATEL 310 >gi|93004284|gb|ABE97062.1| YphC [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVLHNRGISALIDAILSALDL 168 >gi|104784446|ref|YP_610944.1| tRNA modification GTPase TrmE [Pseudomonas entomophila L48] gi|122401168|sp|Q1I2H5|MNME_PSEE4 RecName: Full=tRNA modification GTPase mnmE gi|95113433|emb|CAK18161.1| tRNA modification GTPase [Pseudomonas entomophila L48] Length = 456 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N+ G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNQLAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 D K+ + + I AD V LVVDS + L E + +++ LI NK Sbjct: 278 DDHVEKIGVERALKAIGEADRVLLVVDSTAPEASDPFALWPEFLDQRPDVAKVTLIRNKA 337 Query: 141 DCVKPERLLEQAE 153 D +EQ++ Sbjct: 338 DLSGEHVGMEQSD 350 >gi|113478139|ref|YP_724200.1| tRNA modification GTPase TrmE [Trichodesmium erythraeum IMS101] gi|123056073|sp|Q10VJ7|MNME_TRIEI RecName: Full=tRNA modification GTPase mnmE gi|110169187|gb|ABG53727.1| tRNA modification GTPase trmE [Trichodesmium erythraeum IMS101] Length = 467 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 13/156 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA++G N GKS+L+N + + +IVT TTR +V + + LDT G Sbjct: 224 RTGLKVAIIGRPNVGKSSLLNAWSHSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILI 136 I +D K+ + S + ADIV L +D+ EL I+ +K LILI Sbjct: 284 IRETEDRVEKIGVERSCQAAESADIVLLTIDAQVGWTELDEVIYQQVKH-----RFLILI 338 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 +NK+D V L +E+ + + E V AT Sbjct: 339 INKVDQVD----LVHSELIRSIFYPETIKNVVATAA 370 >gi|148381580|ref|YP_001256121.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC 3502] gi|153931640|ref|YP_001385957.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC 19397] gi|153937169|ref|YP_001389364.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall] gi|168181110|ref|ZP_02615774.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916] gi|170756593|ref|YP_001783278.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra] gi|226951095|ref|YP_002806186.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto] gi|166200473|sp|A7FPM0|MNME_CLOB1 RecName: Full=tRNA modification GTPase mnmE gi|166200474|sp|A5I816|MNME_CLOBH RecName: Full=tRNA modification GTPase mnmE gi|205829143|sp|B1IHR9|MNME_CLOBK RecName: Full=tRNA modification GTPase mnmE gi|148291064|emb|CAL85201.1| probable tRNA modification GTPase [Clostridium botulinum A str. ATCC 3502] gi|152927684|gb|ABS33184.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC 19397] gi|152933083|gb|ABS38582.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall] gi|169121805|gb|ACA45641.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra] gi|182668135|gb|EDT80114.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916] gi|226841162|gb|ACO83828.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto] gi|322807967|emb|CBZ05542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Clostridium botulinum H04402 065] Length = 461 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 9/128 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N + +IVT TTR ++ ++ I +DT G Sbjct: 221 REGLNTVIVGKPNVGKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILI 136 I +D K+ + S I AD+V ++D R E + I D +K + + I++ Sbjct: 281 IRETEDVVEKIGVEKSKEKIDEADLVIFMLDLSRKIDEEDIEIMDFIK-----NKKYIVL 335 Query: 137 LNKIDCVK 144 LNK+D K Sbjct: 336 LNKLDLNK 343 >gi|145640014|ref|ZP_01795612.1| GTP-binding protein EngA [Haemophilus influenzae PittII] gi|145270901|gb|EDK10820.1| GTP-binding protein EngA [Haemophilus influenzae PittII] Length = 504 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ + Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGV-RKR 276 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKW 336 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 337 DGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 13/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I ADIV +VD+ L V I + L++ +++ I++ NK Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTVADIGIANYLRQ--RQNKTTIVVANKT 122 Query: 141 DCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 123 DGIDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|145641461|ref|ZP_01797039.1| GTP-binding protein EngA [Haemophilus influenzae R3021] gi|145273752|gb|EDK13620.1| GTP-binding protein EngA [Haemophilus influenzae 22.4-21] Length = 504 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ + Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGV-RKR 276 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKW 336 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 337 DGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 13/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I ADIV +VD+ L V I + L++ +++ I++ NK Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTVADIGIANYLRQRQNKTT--IVVANKT 122 Query: 141 DCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 123 DGIDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|122701405|emb|CAL88092.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|170718421|ref|YP_001783641.1| GTP-binding protein EngA [Haemophilus somnus 2336] gi|168826550|gb|ACA31921.1| small GTP-binding protein [Haemophilus somnus 2336] Length = 511 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 224 IAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQQYTLIDTAGVRKRG 283 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A+++ L +D+ + + LL I L++++NK D Sbjct: 284 KVHLTVEKFSVIKTLQAIQDANVILLTIDARQGISDQDLSLLGFILNTGRSLVIVVNKWD 343 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 344 GLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 395 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHFNGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 ++ + M S I+ ADIV +VD+ L + + + KR ++ +L+ NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADVGIAQYLRKRQNKTTVLVANKTDG 124 Query: 143 VKPE 146 + + Sbjct: 125 IDAD 128 >gi|323697490|ref|ZP_08109402.1| ribosome-associated GTPase EngA [Desulfovibrio sp. ND132] gi|323457422|gb|EGB13287.1| ribosome-associated GTPase EngA [Desulfovibrio desulfuricans ND132] Length = 505 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 9/175 (5%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E D V+ R + ++G NAGKS+++N +G IV+ TTR + + Sbjct: 177 EEDDGVEKGLR---LTMLGRPNAGKSSIINALIGKDRLIVSDVAGTTRDSIDVTFEKGGK 233 Query: 71 QIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + F+DT G+ N +D K+ + + K +D+ L +D + L++ +A Sbjct: 234 RYTFVDTAGVRKRANIQDHLEKISVIRALKNSKRSDVTVLTIDITLGVGRQDKRLIEFLA 293 Query: 128 KRSSRLILILNKIDCV---KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 K + ++++NK D + + R LE +LV M SA KG G +L Sbjct: 294 KEKTPFMVVVNKADLIPRSETNRALEAFREELRLVPHVPVVMTSAVKGLGIGKLL 348 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKSTL NR + SI TR + G E++ +DT G+ Sbjct: 5 VALVGRPNVGKSTLFNRLLRKSRSITHDLPGVTRDRIYGECIMGETRFDLVDTGGMVLES 64 Query: 85 DSYHKL-------MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 ++ +L + + I A+ + VVD L + E +RS + +L+L Sbjct: 65 EATPELSKDFEDEIFEQAQEAINEANAIVFVVDGKEGL-TPLDRQAAEFVRRSGKPVLML 123 Query: 138 -NKID 141 NK+D Sbjct: 124 INKVD 128 >gi|229845438|ref|ZP_04465568.1| GTP-binding protein EngA [Haemophilus influenzae 6P18H1] gi|229811634|gb|EEP47333.1| GTP-binding protein EngA [Haemophilus influenzae 6P18H1] Length = 504 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ + Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGV-RKR 276 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKW 336 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 337 DGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 9/176 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I ADIV +VD+ L + + +R +++ +++ NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 143 VKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 125 IDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|256828007|ref|YP_003156735.1| small GTP-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256577183|gb|ACU88319.1| small GTP-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 445 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 4/140 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+G NAGKS+ +N +G K +V+ + TTR V V F+DT G+ Sbjct: 183 IALLGRPNAGKSSTINALLGKKRLMVSAEAGTTRDCVDVTVQRGGKTYTFVDTAGVRRKS 242 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS + S K AD+V LV+D + LL + ++++NKID Sbjct: 243 KVIDSLEYFSVVHSMQAAKQADVVVLVLDIMDGVVGQDKRLLSFLDTEKVPFVIVVNKID 302 Query: 142 CVKPERLLE-QAEIANKLVF 160 + ++L + + ++ ++ F Sbjct: 303 LLSKDQLAKTKKDLVDQFAF 322 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VAL+G N GKSTL NR + +VSI TR + V + + +DT G+ ++ Sbjct: 8 VALIGRPNVGKSTLFNRLIKRRVSITHDMAGVTRDSIFSEVRGETRTYMLIDTGGLVPDS 67 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + + + AD++ +VD L + + + + + +++NK+D Sbjct: 68 SDEIEISIFDQAREAMAGADLILFIVDGRTGLHPQDEQVGQYLRQSGKEVRVLVNKVDG- 126 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE+ E+ A+ VSA+ G G D+ + + LP Sbjct: 127 -PEQ--EETLAADFYSLGFPLQCVSASHGFGMGDLREMIETALP 167 >gi|170758742|ref|YP_001788985.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch Maree] gi|205829144|sp|B1KUB2|MNME_CLOBM RecName: Full=tRNA modification GTPase mnmE gi|169405731|gb|ACA54142.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch Maree] Length = 461 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 9/128 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N + +IVT TTR ++ ++ I +DT G Sbjct: 221 REGLNTVIVGKPNVGKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILI 136 I +D K+ + S I AD+V ++D R E + I D +K + + I++ Sbjct: 281 IRETEDVVEKIGVEKSKEKIDEADLVIFMLDLSRKIDEEDIEIMDFIK-----NKKYIVL 335 Query: 137 LNKIDCVK 144 LNK+D K Sbjct: 336 LNKLDLNK 343 >gi|167836401|ref|ZP_02463284.1| GTP-binding protein EngA [Burkholderia thailandensis MSMB43] Length = 445 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D + G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGQPEESEEDAAARGTKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 Q +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKQYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++A KL F++ K +SA + G Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLDFAKFHFISAAEKTGIGA 340 Query: 175 ----CDDVLNYLCSTLP 187 DD LP Sbjct: 341 LMRSVDDAYAAAMKKLP 357 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A+ + + +SA G G D++N Sbjct: 124 MK------YTAVASDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|122701703|emb|CAL88241.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|39938726|ref|NP_950492.1| GTP-binding protein EngA [Onion yellows phytoplasma OY-M] gi|39721835|dbj|BAD04325.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 478 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 12/199 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L NR +G + +I K TR + +DT GI Sbjct: 5 IAIVGRPNVGKSSLFNRIIGRRHAITHQKAGITRDRIYATAEWFTKTFGVIDTGGIEIQS 64 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + + AD++ VVD L N L K + K ++L +NKID Sbjct: 65 TPFLEQIKLQAQLAVDEADVIVFVVDGQTGLTQNDIYLAKLLYKTKKPVLLAVNKIDN-- 122 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL--- 201 LL L F + F +S G G D+L+ + + A + + + DL Sbjct: 123 -HNLLSNTYEFYALGF-DTPFAISTQHGIGIGDLLDKIVFLMRDAALISDSSFLEDLSID 180 Query: 202 -----PMFHFTAEITREKL 215 P F EI ++L Sbjct: 181 TPLQSPPSEFNYEIPEKQL 199 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 14/143 (9%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N+ KD +N CV VG N GKSTL N + ++ IV+ TT V Sbjct: 207 NQEKD---NNIIKFCV--VGRPNVGKSTLTNSLLASQRMIVSDMAGTTTDAVDTFFENDG 261 Query: 70 SQIVFLDTPG------IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 + +DT G I+ +D Y L + ++ ADI CLV+D+ + ++ Sbjct: 262 QKYQIIDTAGIKKRGKIYEQEDKYSVLR---ALGALEKADIACLVLDAKEGILEQDKNIA 318 Query: 124 KEIAKRSSRLILILNKIDCVKPE 146 I + I+I+NK D ++ + Sbjct: 319 GFILEHHKACIIIVNKWDLLEKD 341 >gi|325916037|ref|ZP_08178327.1| GTP-binding proten HflX [Xanthomonas vesicatoria ATCC 35937] gi|325537713|gb|EGD09419.1| GTP-binding proten HflX [Xanthomonas vesicatoria ATCC 35937] Length = 439 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA+ + T VR I S I DT G + Sbjct: 201 IALVGYTNAGKSTLFNALTGAEAYVADQLFATLDPTVRRIALPGGSAI-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ +VD+ L+ + + ++L+ + +L+ N Sbjct: 258 DLPHQLVAAFRSTLSEARDADLLLHIVDAADPLREERILQVDEVLQAVGAGDLPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID + + A+ + VSA G G ++ + L L L Sbjct: 318 KIDKIDGAEVRHDAQDGIPDRARRERVWVSARDGRGLQELQHALGQRLDL 367 >gi|122701493|emb|CAL88136.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + + K+F +S + G +++ + S L L Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122701435|emb|CAL88107.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILNALNL 168 >gi|113461468|ref|YP_719537.1| GTP-binding protein EngA [Haemophilus somnus 129PT] gi|112823511|gb|ABI25600.1| GTP-binding protein [Haemophilus somnus 129PT] Length = 511 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 224 IAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQQYTLIDTAGVRKRG 283 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A+++ L +D+ + + LL I L++++NK D Sbjct: 284 KVHLTVEKFSVIKTLQAIQDANVILLTIDARQGISDQDLSLLGFILNTGRSLVIVVNKWD 343 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 344 GLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 395 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHFNGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 ++ + M S I+ ADIV +VD+ L + + + KR ++ +L+ NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADVGIAQYLRKRQNKTTVLVANKTDG 124 Query: 143 VKPE 146 + + Sbjct: 125 IDAD 128 >gi|292806436|gb|ADE42348.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER+ + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERVYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALNL 168 >gi|293604545|ref|ZP_06686950.1| GTP-binding protein EngA [Achromobacter piechaudii ATCC 43553] gi|292817126|gb|EFF76202.1| GTP-binding protein EngA [Achromobacter piechaudii ATCC 43553] Length = 454 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 6/169 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 VALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 6 VVALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGEIPFIAIDTGGFEPV 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILNKID 141 AKD M R + I AD+V +VD+ L + H++ + + K R++L +NK + Sbjct: 66 AKDGILLEMARQTRQAIAEADVVVFLVDARAGLNAHDHEIAQLLRKSGQQRVLLAVNKAE 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + L A + + + + +SA G G D++ L P Sbjct: 126 GMG----LGPAISEFHELGLGQPYPISAAHGDGIVDLIELALKDLAEPP 170 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 10/169 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N +G + I TTR + + +DT G+ Sbjct: 191 LAIVGRPNVGKSTLINTLMGEERVIAFDLPGTTRDAIEIDFDRDGRRYTLIDTAGLRKRG 250 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK-- 139 ++ K + + I+ +++V L++D+H E+ + + + +++ +NK Sbjct: 251 KVFEAVEKFSVIKTLQAIEASNVVLLMLDAHTEISEQDAHIAGFVLETGRAVVVAINKWD 310 Query: 140 -IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 +D + ER+ + E KL F+ + +SA +G G +L + S Sbjct: 311 GLDGEEKERI--EREFQRKLRFLSFARVHTISALRGQGIKPLLKSINSA 357 >gi|292490242|ref|YP_003525681.1| GTP-binding protein Obg/CgtA [Nitrosococcus halophilus Nc4] gi|291578837|gb|ADE13294.1| GTP-binding protein Obg/CgtA [Nitrosococcus halophilus Nc4] Length = 341 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 24/179 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 V L+G NAGKST + + A + + T + G+VS + V D PG+ Sbjct: 162 VGLLGLPNAGKSTFIRQTSAATPKVADYPFTTLYPHL-GVVSIDSNRSFVMADIPGVIEG 220 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLV---------------VDSHRELKVNIHDLLKEIAK 128 L IR +KH L+ V + R ++ + E+AK Sbjct: 221 AAQGAGLGIRF----LKHLSRTRLLLHLVDVAPMEPAMDPVANVRTIQGELQQFSPELAK 276 Query: 129 RSSRLILILNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 R L+LNKID + P E+ EI N+L + + +SA G GC ++ + L Sbjct: 277 RPQ--WLVLNKIDLIPPSEQAERCQEILNRLAWQGPVYQISALTGEGCQPLIRAVMEYL 333 >gi|122701633|emb|CAL88206.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MSKSFNISVSHNRGISALIDAILNTLNL 168 >gi|122700711|emb|CAL87944.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALDL 168 >gi|116252041|ref|YP_767879.1| GTP-binding protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256689|emb|CAK07777.1| putative GTP-binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 441 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 35/198 (17%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD---------SHRELKVNIHDLLKEIAKRSSRLI 134 ++ R + + AD++ V D S +++ ++DL + A+ RLI Sbjct: 264 LPTHLVAAFRATLEEVLEADLILHVRDMSDADNQAQSSDVMRI-LNDLGIDEAEAEKRLI 322 Query: 135 LILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC-------- 183 + NKID ++PE +++++ A+ +V VSA G G D ++ + Sbjct: 323 EVWNKIDRLEPEVHDAMVQKSAGASNVV------AVSAVSGEGVDTLMEEISRRLSGVMT 376 Query: 184 --------STLPLAPWVY 193 L L PW+Y Sbjct: 377 VATIRLPVDKLALLPWLY 394 >gi|16272103|ref|NP_438305.1| GTP-binding protein EngA [Haemophilus influenzae Rd KW20] gi|68248744|ref|YP_247856.1| GTP-binding protein EngA [Haemophilus influenzae 86-028NP] gi|260581297|ref|ZP_05849114.1| ribosome-associated GTPase EngA [Haemophilus influenzae RdAW] gi|1175159|sp|P44536|DER_HAEIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1573089|gb|AAC21807.1| GTP-binding protein [Haemophilus influenzae Rd KW20] gi|68056943|gb|AAX87196.1| GTP-binding protein EngA [Haemophilus influenzae 86-028NP] gi|260092046|gb|EEW75992.1| ribosome-associated GTPase EngA [Haemophilus influenzae RdAW] Length = 504 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ + Sbjct: 218 IAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGV-RKR 276 Query: 85 DSYH----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKW 336 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 337 DGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 389 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 9/176 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNKIDC 142 ++ + M S I ADIV +VD+ L + + +R +++ +++ NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 143 VKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + AE L IE+ ++A++G G ++ + + P A + +AD+ Sbjct: 125 IDADS--HCAEFYQLGLGEIEQ---IAASQGRGVTQLMEQVLA--PFAEKMENADE 173 >gi|291548774|emb|CBL25036.1| tRNA modification GTPase trmE [Ruminococcus torques L2-14] Length = 462 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 10/130 (7%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N G +IVT TTR ++ + + + +DT GI D Sbjct: 223 ILGKPNAGKSSLLNILAGHDRAIVTDIEGTTRDVLEEQIRLQGLTLNIIDTAGIRQTDDI 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNK--ID 141 K+ + + K AD++ VVD+ R L N I DL+ + R +++LNK +D Sbjct: 283 VEKMGVDKAKEYAKEADLIIYVVDASRNLDENDEKIFDLIYD-----KRTVILLNKSDLD 337 Query: 142 CVKPERLLEQ 151 V E ++ + Sbjct: 338 TVVTEEMIRE 347 >gi|268318173|ref|YP_003291892.1| small GTP-binding protein [Rhodothermus marinus DSM 4252] gi|262335707|gb|ACY49504.1| small GTP-binding protein [Rhodothermus marinus DSM 4252] Length = 434 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 7/167 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IF 81 VA+VG N GKST NR + +I + TR V G + +DT G + Sbjct: 2 ALVAIVGRPNVGKSTFFNRLTRSHEAITHDQPGVTRDRVYGTAEWNGVRFSVVDTGGYVP 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKI 140 N+ D + + + I+ AD + +VD + ++ D L E+ +R+ + + ++ NK Sbjct: 62 NSSDIFEQAIREQVQIAIEEADAILFMVDVTTGV-TDLDDALAELLRRTDKPVFVVANKA 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D ER E + + + + + +SA G G ++L+ L LP Sbjct: 121 D--NDERTWEASTFYQ--LGLSEVYPISALSGRGTGELLDALVKRLP 163 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L N +G + SIVT TTR V ++ +IV +DT G+ Sbjct: 177 LAIVGRPNVGKSSLTNALLGQERSIVTDISGTTRDAVHSVLKYYGREIVLVDTAGLRRRS 236 Query: 85 DSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + T ++ D+ ++D+ L +L++ + ++L++NK D Sbjct: 237 RIRENIEFYATLRTERALRECDVAITLIDATEGLTAQDIRILRQAEELRKGMVLVVNKWD 296 Query: 142 CVK 144 ++ Sbjct: 297 LIE 299 >gi|194476819|ref|YP_002048998.1| tRNA modification GTPase [Paulinella chromatophora] gi|171191826|gb|ACB42788.1| tRNA modification GTPase [Paulinella chromatophora] Length = 406 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG N GKS+L+NR + +IVT TTR ++ + I LDT GI + Sbjct: 173 IALVGRPNVGKSSLLNRLSRRERAIVTDIPGTTRDLIETEIILNGVPITLLDTAGIQVTE 232 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K+ I S I AD + LV D + LLKEI + L+++ NK D Sbjct: 233 DKVEKVGIERSREAIASADAIVLVFDLVEGWTLADAILLKEIPSDVT-LLIVGNKAD 288 >gi|122700839|emb|CAL88008.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|99905863|gb|ABF68626.1| YphC [Helicobacter pylori] gi|122702231|emb|CAL88306.1| GTPase [Helicobacter pylori] gi|242255926|gb|ACS88947.1| GTPase [Helicobacter pylori] gi|292806516|gb|ADE42388.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLDL 168 >gi|313675797|ref|YP_004053793.1| ribosome-associated GTPase enga [Marivirga tractuosa DSM 4126] gi|312942495|gb|ADR21685.1| ribosome-associated GTPase EngA [Marivirga tractuosa DSM 4126] Length = 435 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR V K +I+ ++ TR G + +DT G + Sbjct: 2 SNIVAIVGRPNVGKSTFFNRLVERKQAIMDNESGVTRDRQYGEAQWIGKKFTVIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + K + + +K A ++ +VD H L D + + + ++ NK Sbjct: 62 TGSNDIFEKEIRKQVKEALKEATVILFMVDCHTGLTDMDKDFANVVREVGKPVFVVANKA 121 Query: 141 DCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D E++ +A + + ++ F +S+ G G +VL+ + + P Sbjct: 122 DNT------EKSYMAGEFYSMGFDEVFSMSSASGSGTGEVLDAVVALFP 164 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 6/138 (4%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 ++HKD + R +A++G NAGKS+ +N +G + +IVT TTR + Sbjct: 166 DDHKDPFEGVPR---LAILGRPNAGKSSFLNALLGDERTIVTDIAGTTRDSINTHYKLYG 222 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + DT G+ KD + ++ +D+ +++D+ R + ++ Sbjct: 223 KDFILTDTAGLRKKTKTKDDIEFYSTIRAIQALQDSDVCIVMIDATRGFESQDMQIIGLA 282 Query: 127 AKRSSRLILILNKIDCVK 144 K +++++NK D ++ Sbjct: 283 HKNKKGIMIMVNKWDLIE 300 >gi|302390791|ref|YP_003826612.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM 16646] gi|302201419|gb|ADL08989.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM 16646] Length = 462 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 4/122 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + K +IVT TTR I+ ++ + +DT GI D+ Sbjct: 229 ILGRPNVGKSSLLNSLLREKRAIVTDIPGTTRDIIEEYLNINGIPVKIVDTAGIRETCDA 288 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + + ++K A++V L++D+ EL+ +++ + + +I++LNK D PE Sbjct: 289 VEKIGVERALESLKEAELVLLMLDASDELREEDRAIMELV--KDKFVIVVLNKTDL--PE 344 Query: 147 RL 148 +L Sbjct: 345 KL 346 >gi|227495416|ref|ZP_03925732.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces coleocanis DSM 15436] gi|226830963|gb|EEH63346.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces coleocanis DSM 15436] Length = 727 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 8/187 (4%) Query: 5 EITFFNEHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 E +++D+ + ++G +A++G N GKSTLVNR + + ++V TR V Sbjct: 272 EALLSGDYEDYFDEEDQAGLPVLAIIGRPNVGKSTLVNRILERRAAVVQDTPGVTRDRVS 331 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 +DT G K + + I+ AD V VVD+ L Sbjct: 332 YPAQWAGRDFTLVDTGGWEMDVKGLDKSVADQAEIAIEMADAVIFVVDATVGATHTDEQL 391 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNY 181 ++ + + + ++L NK+D ++A+ A + + F VSA G G D+L+ Sbjct: 392 VRVLRRSNKPILLAANKVDSAN-----QEADAAYLWSLGLGEPFPVSALHGRGAGDLLDK 446 Query: 182 LCSTLPL 188 LPL Sbjct: 447 AMEILPL 453 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +AL+G N GKS+L+N+ G+ +V TTR V ++ F+DT G+ Sbjct: 469 IALIGRPNVGKSSLLNQLAGSDRVVVNDLAGTTRDPVDELIEIDGRPWWFVDTAGVRRKM 528 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y + + + ++ A++ +++D+ ++ +++ +++I N Sbjct: 529 HRTTGADYYASIRTQ---AALEKAELALVLLDASEKMTEQDVRVVQAAIDAGRAVVIINN 585 Query: 139 KIDCVKPER 147 K D V +R Sbjct: 586 KWDLVDEDR 594 >gi|221066040|ref|ZP_03542145.1| GTP-binding proten HflX [Comamonas testosteroni KF-1] gi|220711063|gb|EED66431.1| GTP-binding proten HflX [Comamonas testosteroni KF-1] Length = 387 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 16/171 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL N V A+ T + R + ++E E + DT G Sbjct: 191 ISLVGYTNAGKSTLFNAMVKARAYAADQLFATLDTTTRQMYLTEAEESVSLSDTVGFI-- 248 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILIL 137 +D H L+ + + AD++ VVD+ E + +L EI IL+ Sbjct: 249 RDLPHGLVDAFQATLQEAIDADLLLHVVDASNPGFPEQIQQVQKVLGEIGADDVPQILVF 308 Query: 138 NKIDCVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 NK+D ++PER L + E+ V + + F VSA G G + L Sbjct: 309 NKLDAIEPERQPAVLQDMYELDG--VPVPRVF-VSARSGQGLAQLRQMLAD 356 >gi|198275294|ref|ZP_03207825.1| hypothetical protein BACPLE_01453 [Bacteroides plebeius DSM 17135] gi|198271877|gb|EDY96147.1| hypothetical protein BACPLE_01453 [Bacteroides plebeius DSM 17135] Length = 394 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 15/168 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L G NAGKS+L+N ++V+ TT + + + VF+DT G F+ Sbjct: 12 IGLFGKRNAGKSSLINALTHQDTALVSDIPGTTTDPVFKAMEIHGLGPCVFIDTAG-FDD 70 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLV-VDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + +L IR + ++ DI +V D H + +++ LLKE ++ +I ILNK D Sbjct: 71 EGELGELRIRQTQRALEKTDIALMVCTDEHLDEELHWQRLLKE---KNVPVIWILNKCD- 126 Query: 143 VKPERLLEQAEIANKLV---FIEKTFMVSATKGHGCDDVLNYLCSTLP 187 LL AE + + + +VS G G DD+L L + LP Sbjct: 127 -----LLSDAEQTMRRIEHQCGQVPLLVSTLTGKGLDDILRSLRNKLP 169 >gi|122702689|emb|CAL88534.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|18075579|emb|CAD11185.1| GTP-binding protein [Helicobacter pylori] gi|122702797|emb|CAL88588.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 19/173 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 NKID K ER + I K+F +S + G +++ + + L L+ Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNLS 169 >gi|15645453|ref|NP_207627.1| GTP-binding protein EngA [Helicobacter pylori 26695] gi|3915379|sp|O25505|DER_HELPY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2313967|gb|AAD07883.1| GTP-binding protein homologue (yphC) [Helicobacter pylori 26695] Length = 458 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +S + G +++ + S L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAVLSALDL 169 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 199 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 258 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +IL+LNK D Sbjct: 259 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILVLNKWD 317 >gi|332652769|ref|ZP_08418514.1| ribosome-associated GTPase EngA [Ruminococcaceae bacterium D16] gi|332517915|gb|EGJ47518.1| ribosome-associated GTPase EngA [Ruminococcaceae bacterium D16] Length = 441 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 9/128 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+LVNR +G + IV++ TTR V + ++ + +F+DT G+ Sbjct: 179 VAIIGKPNVGKSSLVNRILGQERVIVSNMAGTTRDAVDSVFENEKGKFLFIDTAGMRKKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 D K + + I+ +D+ +++D+ E + L E K I+++N Sbjct: 239 KVDDRIEKFSVLRATMAIERSDVCLILIDAQEGVTEQDTKVAGLAHEAGKAC---IIVVN 295 Query: 139 KIDCVKPE 146 K D ++ + Sbjct: 296 KWDAIEKD 303 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 10/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L N+ G ++SIV TR + + +DT GI Sbjct: 5 VAIVGRPNVGKSMLFNKLCGQRLSIVEDTPGVTRDRLYAQCEWRNRTFDIVDTGGIEPGT 64 Query: 85 D----SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D S+ + ++ ST A ++ V D + + ++ + + ++L +NK Sbjct: 65 DDQILSFMREQAEIAIST---ATVIVFVCDVKTGMTASDQEVANMLLRSGKPVVLAVNKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D V E + E N + + VSA GHG D+L+ P Sbjct: 122 DQVGREN-PDVYEFYN--LGLGDPIAVSAVHGHGTGDLLDACFEYFP 165 >gi|315586500|gb|ADU40881.1| ribosome-associated GTPase EngA [Helicobacter pylori 35A] Length = 461 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +S + G +++ + S L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAILSALNL 169 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|295398145|ref|ZP_06808194.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563] gi|294973664|gb|EFG49442.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563] Length = 463 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + + +IVT TTR V ++ + + +DT G Sbjct: 223 RDGISTAIVGRPNVGKSSLLNALLREEKAIVTDIEGTTRDTVEEYINIRGVPLKLVDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D ++ + S + A++V L+++ L +LL + + I+I+NK Sbjct: 283 IRDTEDVVERIGVERSKKALMEAELVLLLLNQSEALTAGDRELLS--LTQDHKRIIIMNK 340 Query: 140 IDCVKPERLLEQA 152 ID P +LL+++ Sbjct: 341 IDL--PSQLLKES 351 >gi|294101372|ref|YP_003553230.1| tRNA modification GTPase TrmE [Aminobacterium colombiense DSM 12261] gi|293616352|gb|ADE56506.1| tRNA modification GTPase TrmE [Aminobacterium colombiense DSM 12261] Length = 455 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N + +IVT TTR ++ +++ + I +DT GI Sbjct: 222 VALVGRPNVGKSSLLNALLKESRAIVTAIPGTTRDLIEEVLTYRGIPIRLVDTAGIGAPG 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + I + + AD+ V+D L L+++I+ ++ I+ +NK D Sbjct: 282 DEIEAMGIARAEKAMMEADVRIWVIDGSEPLTPADLALVQKIS--ATNHIVTINKADL-- 337 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 L+ E+ N L+ F++SA K G + + + + + + Sbjct: 338 --PLVISEEMINGLLPQSPVFVISAEKREGIEALKDAIVTNI 377 >gi|292806674|gb|ADE42467.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSQEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|269961403|ref|ZP_06175767.1| GTP-binding protein HflX [Vibrio harveyi 1DA3] gi|269833780|gb|EEZ87875.1| GTP-binding protein HflX [Vibrio harveyi 1DA3] Length = 429 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIELADVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRE-LKVNI---HDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ E + NI H++L+EI ++++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVHEVLEEIDAHEVPTLVVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ ++ I + +T VSA G G D + + L L Sbjct: 317 NKIDNLEEQK----PRIERDEEGVPRTVWVSAMDGLGIDLLFDALTERL 361 >gi|242255916|gb|ACS88942.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGIGALIDAILSVLDL 168 >gi|238064002|ref|ZP_04608711.1| small GTP-binding protein [Micromonospora sp. ATCC 39149] gi|237885813|gb|EEP74641.1| small GTP-binding protein [Micromonospora sp. ATCC 39149] Length = 466 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTLVNR +G + ++V TR V +DT G + Sbjct: 25 VVAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYDAQWSGRAFTVVDTGGWEPD 84 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 AKD + + + AD+V VVD+ ++ + ++ +RS++ +IL+ NK D Sbjct: 85 AKDRAAAIAAQAE-IAVATADVVLFVVDAMVG-STDVDEAAVKMLRRSAKPVILVANKAD 142 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +E + + + + + VSA G G D+L+ + LP AP Sbjct: 143 NAT----IEMESTSLWSLGLGEPYPVSALHGRGSGDLLDKILQALPEAP 187 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 10/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+NRF G + ++V TT V +V +DT G + Sbjct: 200 VALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVDSLVEIGGETWQLVDTAGLRKRV 259 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A + + +R + S I+ A++ +++DS + +L + + L++ NK Sbjct: 260 GKASGTEYYASLRTA-SAIEAAEVAVVLLDSSEPISEQDQRILSMVTEAGRALVIAFNKW 318 Query: 141 DCVKPER--LLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYLCSTL 186 D V +R L++ EI +L I + SA G D + L L Sbjct: 319 DLVDGDRRYYLDK-EIERELRRIPWALRINLSAKTGRAVDKLAPSLRKAL 367 >gi|209545222|ref|YP_002277451.1| GTP-binding protein EngA [Gluconacetobacter diazotrophicus PAl 5] gi|209532899|gb|ACI52836.1| small GTP-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 479 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 77/139 (55%), Gaps = 8/139 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG NAGKSTL+NR +G + I + TR V ++ ++ I +DT G+ Sbjct: 213 LAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVTVLLHDEHGPIQLVDTAGLRRRA 272 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 ++S K+ + + +K A++V L +D+ L V+ DL + + +R R +L LNK Sbjct: 273 RIEESLEKMSVSATIEALKMAEVVVLTLDA--TLGVHEQDLQIARLIEREGRCCVLALNK 330 Query: 140 IDCVKPERLLEQAEIANKL 158 D V+ +R+ + I++++ Sbjct: 331 WDAVE-DRIATRQAISDRI 348 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 V + G N GKSTL NR VG + ++V TR + ++ +DT G+ Sbjct: 15 VVVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEAETVMRGRRVRLVDTAGLEEA 74 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A D+ + M S S + AD+V +D+ + + ++ ++LI NK + Sbjct: 75 AADTLYGRMRASSESAVAQADLVLFCIDTRAGITPADEHFAAWLRRQGRPVLLIANKAEG 134 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R A + + + +SA G G D++ + LP Sbjct: 135 ----RQGAAAAMEAFALGLGTPLAISAEHGEGLSDLMGEIADRLP 175 >gi|145299527|ref|YP_001142368.1| GTP-binding protein EngA [Aeromonas salmonicida subsp. salmonicida A449] gi|166224302|sp|A4SNZ8|DER_AERS4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|142852299|gb|ABO90620.1| GTP-binding protein EngA [Aeromonas salmonicida subsp. salmonicida A449] Length = 499 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD+V +VD+ L + + K ++ L+ NK D + Sbjct: 64 EEGIELKMAEQSLLAIEEADVVLFMVDARAGLTAADQAIAAHLRKTHKKVFLVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + + + + + ++A G G VL+ L L LAP Sbjct: 124 DGDSAVSEF----YCLALGDVYQIAAAHGRG---VLSLL--ELALAP 161 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG N GKSTL NR +G IV TTR V + E + V +DT G+ Sbjct: 216 AIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYVPMERDEQKYVVIDTAGVRRRGK 275 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ K + + I+ A++ LV+D+ + +L + ++L++NK D Sbjct: 276 VHETVEKFSVIKTLKAIEDANVCLLVIDAQETITDQDLSILGFVLHSGRSVVLVVNKWDG 335 Query: 143 VKPERLLE--QAEIANKLVFIE--KTFMVSATKGHGC 175 + +++ E + E+ +L FI+ + +SA G G Sbjct: 336 LD-QKVKEDVKNELDRRLGFIDFARVHFISALHGSGV 371 >gi|122702161|emb|CAL88271.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122700701|emb|CAL87939.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILDTLNL 168 >gi|154249103|ref|YP_001409928.1| ribosome biogenesis GTP-binding protein YsxC [Fervidobacterium nodosum Rt17-B1] gi|154153039|gb|ABS60271.1| GTP-binding protein HSR1-related [Fervidobacterium nodosum Rt17-B1] Length = 201 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 12/173 (6%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G A VG +N GKS+L+N VG KV+ V+ T +I ++ +++ F+D PG Sbjct: 29 NGEYAFVGRSNVGKSSLLNALVGKKVAFVSKNPGKTSTINYFLI---DNRFYFVDLPGYG 85 Query: 82 NAKDS------YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 AK S + K++ R + ++ ++DS EL + LL+ + ++ Sbjct: 86 YAKTSKKDRELWRKVIERYFSERSWNMKVMFSLIDSRHELMESDEQLLEWTQILGVKPVV 145 Query: 136 ILNKIDCVKPERLLEQAEIANKLV---FIEKTFMVSATKGHGCDDVLNYLCST 185 +L KID + L+Q + ++ IE+ S+ G D+V N + T Sbjct: 146 LLTKIDKLNSSERLKQIKYFENILKSYGIERIIPCSSLTKEGLDEVWNVIFET 198 >gi|153816157|ref|ZP_01968825.1| hypothetical protein RUMTOR_02405 [Ruminococcus torques ATCC 27756] gi|317500477|ref|ZP_07958701.1| GTP-binding protein engA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089422|ref|ZP_08338321.1| GTP-binding protein engA [Lachnospiraceae bacterium 3_1_46FAA] gi|145846492|gb|EDK23410.1| hypothetical protein RUMTOR_02405 [Ruminococcus torques ATCC 27756] gi|316898232|gb|EFV20279.1| GTP-binding protein engA [Lachnospiraceae bacterium 8_1_57FAA] gi|330404790|gb|EGG84328.1| GTP-binding protein engA [Lachnospiraceae bacterium 3_1_46FAA] Length = 441 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G +SIV TR + V+ + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKEFTMIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SKDIILSQMREQAQIAIDTADVIIFITDVKQGL-VDADSKVADMLRRSGKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + I +SA G D+L+ + P Sbjct: 124 NFD-KYMADVYEFYN--LGIGDPVPISAASRLGLGDMLDIVAENFP 166 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 5/149 (3%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F E +D+ R VA+VG N GKS+++N+ +G IV+ TTR + + Sbjct: 165 FPEGSAQAEDDDRP-RVAIVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAIDTEILHN 223 Query: 69 ESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 + +F+DT G+ K+ + I + + ++ AD+V +V+D+ + + Sbjct: 224 GKEYIFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLMVIDATEGVTEQDAKIAGI 283 Query: 126 IAKRSSRLILILNKIDCV-KPERLLEQAE 153 +R +I+++NK D + K +R + + E Sbjct: 284 AHERGKGVIIVVNKWDAIEKNDRTMREYE 312 >gi|332971197|gb|EGK10160.1| tRNA modification GTPase TrmE [Desmospora sp. 8437] Length = 458 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N +IVT TTR ++ V+ + + +DT GI +D Sbjct: 225 IVGRPNVGKSSLLNALARENKAIVTDIPGTTRDVIEEYVNVRGIPLRLVDTAGIRETEDV 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ + S ++ AD++ L+++ L + LLK + R+ +I+++NK+D P Sbjct: 285 VERIGVERSHQALEGADLILLLLNHGESLSEDDRKLLKMV--RNQTVIVVVNKMDL--PR 340 Query: 147 RL 148 RL Sbjct: 341 RL 342 >gi|325924507|ref|ZP_08186026.1| GTP-binding proten HflX [Xanthomonas gardneri ATCC 19865] gi|325545002|gb|EGD16337.1| GTP-binding proten HflX [Xanthomonas gardneri ATCC 19865] Length = 427 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA+ + T VR I S I DT G + Sbjct: 189 IALVGYTNAGKSTLFNALTGAEAYVADQLFATLDPTVRRIALPGGSAI-LADTVGFV--R 245 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSH---RELKV-NIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ +VD+ RE ++ + ++L + +L+ N Sbjct: 246 DLPHQLVAAFRSTLSEARDADLLLHIVDAADPLREERIRQVDEVLHAVGAGDLPQLLVFN 305 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID ++ ++ A+ + VSA G G +++ + L L L Sbjct: 306 KIDKIEGAQVRHDAQDGIPDQARRERVWVSARDGRGLEELQHALGQRLDL 355 >gi|307245234|ref|ZP_07527325.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254181|ref|ZP_07536026.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258646|ref|ZP_07540381.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853878|gb|EFM86092.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862881|gb|EFM94830.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867303|gb|EFM99156.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 506 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 220 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 279 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 280 KVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 339 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 340 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 391 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|326791376|ref|YP_004309197.1| ribosome-associated GTPase EngA [Clostridium lentocellum DSM 5427] gi|326542140|gb|ADZ83999.1| ribosome-associated GTPase EngA [Clostridium lentocellum DSM 5427] Length = 441 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+LVN+ VG + IV++ TTR V V+ + + V +DT GI Sbjct: 180 VAIIGKPNVGKSSLVNKIVGEERVIVSNIAGTTRDSVDTEVTIEGQEYVLIDTAGIRRRS 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 K++ K I + + I AD+V +++D+ E I + E K I+++N Sbjct: 240 KIKENIEKYSIIRTIAAIDRADVVLILIDAEEGITEQDTKIAGMAHEAGKGC---IIVVN 296 Query: 139 KIDCVKPERLLEQA---EIANKLVFIEKT--FMVSATKGH 173 K D ++ + A +I N L +++ +SA G Sbjct: 297 KWDAIEKDDKTMNAYLKKITNTLAYMQYAPCMFISALTGQ 336 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA++G N GKSTL NR +K SIV TR + G V + +DT GI ++ Sbjct: 6 VAVIGRPNVGKSTLFNRLTKSKTSIVDDTPGVTRDRIYGEVEWLNHKFTIIDTGGIEPDS 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILNK 139 D M R + + I+ AD++ +VD +K + D +A K ++L++NK Sbjct: 66 TDIILSQMRRQAEAAIESADVIIFLVD----VKTGMTDADTHVANMLRKSHKPVVLVVNK 121 Query: 140 ID 141 +D Sbjct: 122 VD 123 >gi|292806546|gb|ADE42403.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLNL 168 >gi|149908865|ref|ZP_01897525.1| GTP-binding protein EngA [Moritella sp. PE36] gi|149808139|gb|EDM68080.1| GTP-binding protein EngA [Moritella sp. PE36] Length = 493 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 4/153 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANLAGREFIVVDTGGINGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ AD V +VD+ L V + + + K+ ++ L+ NK+D + Sbjct: 64 EEGIDAKMADQSLLAIEEADAVLFMVDARAGLMVADQAIAEHLRKQQKKVFLVANKVDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + + AE + + + ++A++G G + Sbjct: 124 DGD--VAVAEF--YALALGDIYQIAASQGRGIN 152 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 14/165 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A++G N GKSTLVNR +G + +V TTR + + + +DT G+ Sbjct: 208 LAMIGCPNVGKSTLVNRILGEERVVVYDMPGTTRDSIYIPMERAGRNYMLIDTAGVRRRK 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 N ++ K I + I A++V +V+D+ + V DL L A S R I+I +NK Sbjct: 268 NINEAVEKFSIVKALQAIDDANVVLMVLDAR--VGVTSQDLTLLGFAINSGRSIVIAINK 325 Query: 140 ---IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 +D +R+ ++E+ +L FI+ + +SA G G ++ Sbjct: 326 WDGLDAGVKDRI--KSELDRRLGFIDFARIHFISALHGTGVGNLF 368 >gi|299530502|ref|ZP_07043922.1| GTP-binding protein EngA [Comamonas testosteroni S44] gi|298721478|gb|EFI62415.1| GTP-binding protein EngA [Comamonas testosteroni S44] Length = 446 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR ++ +IV TR G + + + + +DT G + Sbjct: 4 VIALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A K M + + + AD+V V+D+ L H++ + + IL+ NK + Sbjct: 64 ASRGIFKEMAKQTQQAVAEADVVIFVLDARAGLSGQDHEIGNYLRRLGKPTILVANKAEG 123 Query: 143 VKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +K +L E E+ + + VSA G G +++ L L Sbjct: 124 MKDGVQLSEFYELG-----LGEVVPVSAAHGQGVRSLVDAALGLLNL 165 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 6/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G NAGKSTL+N ++G + + TTR + + +DT G+ Sbjct: 183 LAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFELIDTAGLRRKG 242 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L++D+ + + + I + ++L +NK D Sbjct: 243 KVFEAIEKFSVVKTLQAIEGANVVLLLIDATQGVTDQDAHIAGYILESGRSVVLGINKWD 302 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCD 176 V +R + + I +L F++ +SA K G + Sbjct: 303 AVDDYQRQMLERSIETRLSFLKFAPLHFISAQKRQGLE 340 >gi|292806518|gb|ADE42389.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|163859322|ref|YP_001633620.1| tRNA modification GTPase TrmE [Bordetella petrii DSM 12804] gi|205829119|sp|A9IJ97|MNME_BORPD RecName: Full=tRNA modification GTPase mnmE gi|163263050|emb|CAP45353.1| putative tRNA modification GTPase [Bordetella petrii] Length = 452 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 25/177 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+N G ++IVT TTR V + + +DT G+ + Sbjct: 224 VVLAGKPNVGKSSLLNALAGDDIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSR--LILILNK 139 D+ + I +W I+ AD++ + D+ + EL I +A+ +R L+ + NK Sbjct: 284 DTVESIGIARTWKEIERADVILHLQDATQPADELDAQI------VARLPARTPLLTVFNK 337 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +D LL+Q A +SA +G G D++ L L LA W A+ Sbjct: 338 VD------LLDQPFQAQA-----GQLGISAREGAGLDELRARL---LALAGWNPGAE 380 >gi|58428851|gb|AAW77888.1| thiophene and furan oxidation protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 462 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 18/172 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G++ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 237 LIGPPNAGKSSLLNALAGSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 296 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + +R + + ++ AD+ +V+D+ + + I D + + R + I NK D + Sbjct: 297 IEREGMRRARAELERADLALVVLDARDPQAARAAIGDAIDAV----PRQLWIHNKCDLLS 352 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 L+ IA VSA G G + L+ L L V S D Sbjct: 353 DAAPLDVNAIA-----------VSAVTGQGLEQ-LHIRLRELALGDGVESVD 392 >gi|83591335|ref|YP_431344.1| tRNA modification GTPase TrmE [Moorella thermoacetica ATCC 39073] gi|123523726|sp|Q2RFI8|MNME_MOOTA RecName: Full=tRNA modification GTPase mnmE gi|83574249|gb|ABC20801.1| tRNA modification GTPase trmE [Moorella thermoacetica ATCC 39073] Length = 462 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 19/162 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N + + +IV++ TTR + + +DT G+ Sbjct: 223 VAIVGRPNVGKSSLLNALLNQERAIVSNIPGTTRDTIEETLQLGGFTCRLIDTAGLRETA 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDC 142 D + + S I AD+V +VVD L+ I D + + + R LI+I NK+D Sbjct: 283 DELESIGVARSKKAIAAADLVLVVVD----LQTGIQDEDRRVLESVRDKVLIIIGNKLDL 338 Query: 143 VKPERLLEQAEIANKLVFIEK------TFMVSATKGHGCDDV 178 V +I KL +E VSA KG G D++ Sbjct: 339 VAH-------DINKKLADLESFAGNYPRVAVSALKGKGLDEL 373 >gi|326384755|ref|ZP_08206432.1| GTP-binding protein Der [Gordonia neofelifaecis NRRL B-59395] gi|326196563|gb|EGD53760.1| GTP-binding protein Der [Gordonia neofelifaecis NRRL B-59395] Length = 479 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A+VG N GKSTLVNR +G + ++V TR V Q + DT G + Sbjct: 45 VLAIVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYKAEWTGKQFMVTDTGGWEPD 104 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AK + + ++ ++ AD + +VVD+ + + + + + ++L NK+D Sbjct: 105 AKGMGLAIAAQAEYA-MRTADAIVVVVDATVGATATDEAVARVLRRSKTPVLLAANKVDS 163 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ER+ +AE A+ + + +SA G G D+L+ + LP P Sbjct: 164 ---ERM--EAEAASLWSLGLGEPITISAAHGRGTGDLLDKILDALPETP 207 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VALVG N GKS+L+N+ G + ++V + TT V ++ F+DT G + Sbjct: 219 VALVGKPNVGKSSLLNKLAGEERAVVDNVAGTTVDPVDEMIELGGKPWQFVDTAGLRRKV 278 Query: 81 FNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 NA + Y L R + + A++ L++D+ + + +L I L+++ N Sbjct: 279 RNATGHEYYASLRTR---AALDSAEVALLLIDASQTITEQDLRVLSMIIDSGRALVVVFN 335 Query: 139 KIDCVKPER 147 K D V +R Sbjct: 336 KWDLVDEDR 344 >gi|325268712|ref|ZP_08135341.1| ribosome-associated GTPase EngA [Prevotella multiformis DSM 16608] gi|324988956|gb|EGC20910.1| ribosome-associated GTPase EngA [Prevotella multiformis DSM 16608] Length = 437 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++D+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRSIENSDVCILMLDATRGIEAQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + + AD+V +VD+ + D+ + + ++L+ NK+ Sbjct: 62 VKSDDIFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANKV 121 Query: 141 D 141 D Sbjct: 122 D 122 >gi|315128182|ref|YP_004070185.1| tRNA modification GTPase TrmE [Pseudoalteromonas sp. SM9913] gi|315016696|gb|ADT70034.1| tRNA modification GTPase TrmE [Pseudoalteromonas sp. SM9913] Length = 454 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 10/148 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E + V + ++ G V + G NAGKS+L+N G + +IVT T Sbjct: 191 GDLNAIIEQLNAVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAIVTEIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR ++R + + +DT G+ + D ++ I +W I AD V ++D Sbjct: 251 TRDVLREHIHIDGMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVLFMLDGTDTAD 310 Query: 117 VNIHDLLKE-IAK--RSSRLILILNKID 141 + H + E +AK + + +I NK D Sbjct: 311 TDPHAIWPEFMAKLPQGMGVTVIRNKAD 338 >gi|313896881|ref|ZP_07830428.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 137 str. F0430] gi|312974328|gb|EFR39796.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 137 str. F0430] Length = 461 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 20/159 (12%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-------FLDTPG 79 +VG N GKS+L+N +G + +IVT TTR ++ E QIV LDT G Sbjct: 228 IVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVI-------EEQIVIEGIPLRLLDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + A+D+ ++ + + + A++V V D L DL+ + ++ +I++ NK Sbjct: 281 LRAAEDAVEQIGVARTQRHLADAELVLAVFDGAAPLTPEDEDLIVRLRNCAAEMIVLCNK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + +L A+ + + ++SA G G DD+ Sbjct: 341 ED---RDSVLTAADFS---MLDAPVLVISAQAGTGLDDL 373 >gi|294775319|ref|ZP_06740842.1| small GTP-binding protein domain protein [Bacteroides vulgatus PC510] gi|294450896|gb|EFG19373.1| small GTP-binding protein domain protein [Bacteroides vulgatus PC510] Length = 500 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ ++ + F+DT GI Sbjct: 259 VAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQGVTFRFIDTAGIRQTN 318 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ L I ++ + A ++ ++DS R + D+L + ++I++ NK D Sbjct: 319 DTIENLGIERTFQKMDQAYVILWMIDSTDTQRRFEELKADILPHCEGK--KMIILFNKSD 376 Query: 142 CV 143 + Sbjct: 377 LL 378 >gi|332308614|ref|YP_004436465.1| tRNA modification GTPase TrmE [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175943|gb|AEE25197.1| tRNA modification GTPase TrmE [Glaciecola agarilytica 4H-3-7+YE-5] Length = 460 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR +++ + + +DT G+ ++ Sbjct: 225 VVIAGRPNAGKSSLLNALAGRDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSS 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D ++ I +W I+ AD V ++DS + + + + + +R L +I NK D Sbjct: 285 DEVERIGIERAWQEIEQADRVLFMLDSTETQESDPYKIWPDFMQRLPDKMGLTVIRNKAD 344 >gi|317453537|emb|CBL87878.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|216263825|ref|ZP_03435819.1| tRNA modification GTPase TrmE [Borrelia afzelii ACA-1] gi|215979869|gb|EEC20691.1| tRNA modification GTPase TrmE [Borrelia afzelii ACA-1] Length = 464 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 7/120 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 + L G+ NAGKS+L N F+ SIV+ TTR + S + I+F DT G+ + Sbjct: 225 LVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLRD 282 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL-KEIAKRSSRLILILNKID 141 A + +L I S S IK A +V V+D L + DLL + K +S+++ +LNKID Sbjct: 283 ADNFVERLGIEKSNSLIKEASLVIYVIDISSNLTRD--DLLFIDSNKSNSKILFVLNKID 340 >gi|122701341|emb|CAL88060.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALDL 168 >gi|122700899|emb|CAL88038.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALNL 168 >gi|319641684|ref|ZP_07996367.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_1_40A] gi|317386658|gb|EFV67554.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_1_40A] Length = 498 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ ++ + F+DT GI Sbjct: 257 VAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQGVTFRFIDTAGIRQTN 316 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ L I ++ + A ++ ++DS R + D+L + ++I++ NK D Sbjct: 317 DTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKADILPHCEGK--KMIILFNKSD 374 Query: 142 CV 143 + Sbjct: 375 LL 376 >gi|292806458|gb|ADE42359.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDSAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|225388053|ref|ZP_03757777.1| hypothetical protein CLOSTASPAR_01787 [Clostridium asparagiforme DSM 15981] gi|225045906|gb|EEG56152.1| hypothetical protein CLOSTASPAR_01787 [Clostridium asparagiforme DSM 15981] Length = 427 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 26/199 (13%) Query: 4 GEITFFNEHKDFVQDNSRSGCV---ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 E+ H++ + GC A+VG TNAGKSTL+N A + T Sbjct: 180 AELEDVKRHREVTRQQREQGCAVSAAIVGYTNAGKSTLLNHLTDADILAEDKLFATLDPT 239 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI---KHADIVCLVVD-SHRELK 116 R + QI+ DT G F K +H +I ST+ K++DI+ VVD S+ ++ Sbjct: 240 TRSFTLPGDQQILLTDTVG-FIRKLPHH--LIEAFKSTLEEAKYSDIILHVVDCSNPQMD 296 Query: 117 VNIH---DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTF------MV 167 + +H + LK++ ++ + NK D ++ ++E E A L + + F + Sbjct: 297 MQMHVVRETLKDLEIVDKTVVTVFNKTDRLRA--MVESGE-AGPLAQLPRDFSADYQVRI 353 Query: 168 SATKGHGCDDVLNYLCSTL 186 SA G G D+ LC L Sbjct: 354 SAKTGEGLDE----LCGIL 368 >gi|122701377|emb|CAL88078.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLNL 168 >gi|122701381|emb|CAL88080.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|40062766|gb|AAR37660.1| GTP-binding protein, Era/TrmE family [uncultured marine bacterium 439] Length = 463 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 6/182 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKSTL+NR +G + + TTR + + + Q +DT GI Sbjct: 178 AVAVLGRPNVGKSTLINRILGEERVLAIDIPGTTRDTIFIPFTREGEQYTLIDTAGIRRK 237 Query: 84 K---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + K I + ++ + +V LV+D+H + LL IA + L++++NK Sbjct: 238 RSVEEKVEKFSIIKAIEALEDSHVVILVLDAHEGVTEQDATLLGMIADKGRALLIVINKW 297 Query: 141 DCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 D + + E + ++ KL FI +SA G G + ++ + A +S Sbjct: 298 DGLDDYQKSEVKRKLDVKLSFISYASVHYISALHGSGVGKLFTHIRKSFEHAGAKFSTSS 357 Query: 198 IS 199 ++ Sbjct: 358 LN 359 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 15/178 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 ++LVG N GKSTL NR ++ ++V+ TR V + E+ +DT G+ N Sbjct: 5 VISLVGRPNVGKSTLFNRLSNSRQALVSDFEGLTRDRQYATVQLDDETMCSIIDTGGLTN 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + S + +D++ +V D L ++I L+++ K +IL+ NK Sbjct: 65 EDSLIDTGIHEQVLSALDESDVIFFIVSNKDGVTSLDLDISSQLRKLKK---NIILVCNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + E E+ + + ++SA G +++ T+PL P + ++ Sbjct: 122 AEGLNQVTAAEFFELG-----LGEPVLISAEHNQGISELIEI---TIPLLPQNFENNE 171 >gi|157828884|ref|YP_001495126.1| GTP-binding protein EngA [Rickettsia rickettsii str. 'Sheila Smith'] gi|166225852|sp|A8GT93|DER_RICRS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157801365|gb|ABV76618.1| GTP-binding protein EngA [Rickettsia rickettsii str. 'Sheila Smith'] Length = 447 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 + LVG N GKSTL NR K +IV TR R K FL DTPG+ Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRD--RKYTDGKIGSFEFLLIDTPGLDE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K +I + I AD++C +VD+ + + L + K + IL++NK C Sbjct: 64 HPNSMGKRLIEQTTKAILEADLICFMVDARSGILPDDKLLSSFVRKYNKPAILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 122 ---EKAFDFDKEYYKLGF-DSMIAISAEHGTGLIDLYDEIIAKLP 162 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D + C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 171 IADPIKGDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIK 230 Query: 74 FLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S KL + ++IK A+ V L++D+ LK ++ + Sbjct: 231 LIDTAGLRKKSTITESLEKLSASDTINSIKLANTVILMIDALAPLKQQDLNIASHVVNEG 290 Query: 131 SRLILILNKIDCVK 144 +++++NK D VK Sbjct: 291 RSIVIVVNKWDLVK 304 >gi|325687138|gb|EGD29161.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK72] Length = 436 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + AD++ VV + + + + K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + EI + + VS+ G G DVL+ + LP Sbjct: 123 NPEM---RNEIFDFYALGLGDPLPVSSVHGIGTGDVLDAIVENLP 164 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 10/125 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + + ++ E Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +++++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GIVIVVN 294 Query: 139 KIDCV 143 K D + Sbjct: 295 KWDTL 299 >gi|122702501|emb|CAL88441.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER E+A A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDK-ER--ERA-YAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702153|emb|CAL88267.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|292806622|gb|ADE42441.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSALNL 168 >gi|122702835|emb|CAL88607.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAILNALNL 168 >gi|4467663|emb|CAB37783.1| GTP-binding protein homologue [Helicobacter pylori] gi|4467673|emb|CAB37788.1| GTP-binding protein homologue [Helicobacter pylori] gi|122700741|emb|CAL87959.1| GTPase [Helicobacter pylori] gi|292806526|gb|ADE42393.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806604|gb|ADE42432.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|75763043|ref|ZP_00742832.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489475|gb|EAO52902.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 251 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVD-- 122 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +++I + L F E F +S T G G D+L+ + P Sbjct: 123 NPEM---RSDIYDFYSLGFGEP-FPISGTHGLGLGDLLDEAANHFP 164 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LV+ +G + IV++ TR V S + V +DT G+ KD Sbjct: 179 SLIGRPNVGKSSLVHALLGQERVIVSNIAGPTRDAVDTPYSTDDQDYVIIDTAGM-RTKD 237 Query: 86 SYHKL 90 Y ++ Sbjct: 238 KYMQV 242 >gi|327399427|ref|YP_004340296.1| GTP-binding protein engA [Hippea maritima DSM 10411] gi|327182056|gb|AEA34237.1| GTP-binding protein engA [Hippea maritima DSM 10411] Length = 434 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 6/130 (4%) Query: 21 RSGC---VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 R+ C +A+ G +N GKS+L+N +G S+V+ K+ TT + + + +DT Sbjct: 163 RADCLAKIAITGRSNVGKSSLINAILGENRSVVSDKIGTTTDSIDTPFIYNSNCYLLIDT 222 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 GI K + KL S+ I +DI ++D+ L ++ +I +++ LI Sbjct: 223 AGIRKKAKTKKAIDKLSSIFSFFAIDRSDICVFLIDAKEGLTSTDKFIIDKIIEKNKGLI 282 Query: 135 LILNKIDCVK 144 + LNK D VK Sbjct: 283 IALNKWDLVK 292 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 1/122 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N V S++ TTR + + ++F+DT G F + Sbjct: 4 VAIVGKPNVGKSTLFNALVKKNKSLILDMPGTTRDRIFEYGKIDDKDVLFIDTGG-FETE 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + I +D V +V D L + ++ K + K IL NK D K Sbjct: 63 GEFSQNINEQIKLAIDSSDAVIVVFDLTTPLSIQDEEIFKYVVKSKKPYILTANKSDIKK 122 Query: 145 PE 146 E Sbjct: 123 QE 124 >gi|322492573|emb|CBZ27850.1| GTP-binding protein-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 497 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 12/142 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA+VG TN+GK++LVNR VG + + + TTR + + K ++ +DT G+ Sbjct: 231 VAIVGRTNSGKTSLVNRLVGYERNRAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQR 290 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 + + + LS + I++A +V +V D+ E N +D+ L ++A+ +L N Sbjct: 291 YRTDREFLSRIHSLSLNEIRYAHVVVVVFDAT-EGHPNKYDMSVLHKVAQEGRPFVLCAN 349 Query: 139 KIDCVKPERLLEQAEIANKLVF 160 K D V L+Q+ A + F Sbjct: 350 KWDAV-----LDQSATAEAIDF 366 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 12/157 (7%) Query: 25 VALVGATNAGKSTLVNRF-----VGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 VA+VG N+GKS+L N + AK SIV TR V + +DTPG Sbjct: 31 VAIVGRMNSGKSSLFNLLCQDPTMPAKKSIVKDFNGITRDCVEAHAVLDDLHFTVIDTPG 90 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K ++ ++ T++ AD V ++ HDL++ +A + L++NK Sbjct: 91 LVGGK------LVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPTCLLVNK 144 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D V E +I N+L + K SA K G D Sbjct: 145 MDLVPGEEEALVLDIYNRL-GLGKAVPFSARKREGLD 180 >gi|294671265|ref|ZP_06736117.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306992|gb|EFE48235.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 454 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 3/152 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G ++IVT TTR VR ++ + +DT G+ Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I S + AD+ +++D + +L + + I I NK D Sbjct: 280 DVVEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNSLPAGLKK-IEIHNKADLTG 338 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +A + +SA G G D Sbjct: 339 EPVAVRSDGLAQ--TGADTVISLSAKTGAGLD 368 >gi|150006140|ref|YP_001300884.1| tRNA modification GTPase TrmE [Bacteroides vulgatus ATCC 8482] gi|254883528|ref|ZP_05256238.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_3_47FAA] gi|205829059|sp|A6L6E8|MNME_BACV8 RecName: Full=tRNA modification GTPase mnmE gi|149934564|gb|ABR41262.1| putative GTPase, ThdF family [Bacteroides vulgatus ATCC 8482] gi|254836321|gb|EET16630.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_3_47FAA] Length = 500 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TNAGKSTL+N + + +IV+ TTR ++ ++ + F+DT GI Sbjct: 259 VAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQGVTFRFIDTAGIRQTN 318 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ L I ++ + A ++ ++DS R + D+L + ++I++ NK D Sbjct: 319 DTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKADILPHCEGK--KMIILFNKSD 376 Query: 142 CV 143 + Sbjct: 377 LL 378 >gi|122700619|emb|CAL87898.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALNL 168 >gi|317374946|sp|B3DXK2|DER_METI4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 460 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 5/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 +A+VG N GKS L NR G ++S+V + TR + + ++ +IV +DT G +F+ Sbjct: 4 IAIVGRPNVGKSLLFNRLCGKEISLVYDQPGVTRDRIVCCIKKEGKEIVLVDTGGLVFDC 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + ++ A + VVD L + K + ++ + +++NK+D Sbjct: 64 QTDLAKSLFDQISMAVEEAHHILFVVDGRTGLLPLDKQIAKFLREKHKAVTVVVNKLDHP 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 E AE AN + E+ F VSA G + +L + S Sbjct: 124 GMEHFC--AEFAN--LGFEEIFAVSAAHNLGINQLLEKIFS 160 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKS+L+N +G +V + TT V + F+DT G+ Sbjct: 177 IAVIGQPNAGKSSLINSLIGESRLVVHEEPGTTHDAVEVGIEVCGVPFTFIDTAGLKKKN 236 Query: 85 DSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 L I++S T I + +V ++D + + + + I K ++ILNKID Sbjct: 237 KLQEGLEIKVSGRTVHSINRSHLVWFIIDGQKGITLQDKKIGGLIQKAFKPCMVILNKID 296 >gi|295402127|ref|ZP_06812086.1| tRNA modification GTPase TrmE [Geobacillus thermoglucosidasius C56-YS93] gi|294975810|gb|EFG51429.1| tRNA modification GTPase TrmE [Geobacillus thermoglucosidasius C56-YS93] Length = 461 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 221 REGLATVIIGRPNVGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ H L L + + I+I+NK Sbjct: 281 IRETEDIVERIGVERSRQMLKEADLILLVLNYHEPLTAEDEKLFDMV--KGMDFIVIVNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|239616939|ref|YP_002940261.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] gi|259645901|sp|C5CEL1|ENGB_KOSOT RecName: Full=Probable GTP-binding protein EngB gi|239505770|gb|ACR79257.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 190 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 8/138 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA G +N GKSTL+N K++ + K TRSI +V+ S+ F+D PG A Sbjct: 26 VAFAGRSNVGKSTLLNTLFQRKLAHTSSKPGKTRSINFYLVN---SKYYFVDLPGYGFAS 82 Query: 85 DSYHKL-----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 S +L +I +ST + ++V +++DS ++ N + +L+ I S I++L K Sbjct: 83 ASKQELARWKELIEDYFSTRDNLNLVTILMDSRHPMQKNDYKMLEWIKDYSIPFIVVLTK 142 Query: 140 IDCVKPERLLEQAEIANK 157 D + L + +I K Sbjct: 143 TDKLSGNELKKMIQIYEK 160 >gi|122701647|emb|CAL88213.1| GTPase [Helicobacter pylori] gi|122701655|emb|CAL88217.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGVPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|289449698|ref|YP_003474787.1| ribosome-associated GTPase EngA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184245|gb|ADC90670.1| ribosome-associated GTPase EngA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 441 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST N G ++SIV TR + V + +DT GI Sbjct: 6 VAVVGRPNVGKSTFFNFLAGERISIVDDTPGVTRDRIYAEVEWLGRKFSLIDTGGIEPRT 65 Query: 85 DSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D +R+ I+ AD++ +VD L D+ + K +IL +NK D V Sbjct: 66 DDVLLQQMRIQAELAIETADVILFMVDLKAGLHAADADIANMLRKTKKPVILAVNKCDHV 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E E N + + F +SA G G ++L+ + LP Sbjct: 126 G-DTPPEAYEFYN--LGLGDFFPISAVHGLGMGELLDAIVENLP 166 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L+G NAGKS+L NR +G SIV+ TTR + ++ + V +DT G+ Sbjct: 180 ICLIGKPNAGKSSLTNRLLGQNRSIVSSISGTTRDSLDTPLTNEFGNYVLIDTAGLRKKS 239 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLV----VDSHRELKVNIHDLLKEIAKRSSRLILIL 137 D + + + + I+ +D VCL+ +D E + K S I ++ Sbjct: 240 RIDDQVERYSMIRALAAIERSD-VCLILIDAIDGITEQDTKVAGYAHNAGKAS---IFVV 295 Query: 138 NKIDCVKPER-LLEQ--AEIANKLVFI--EKTFMVSATKGHGCDDVL 179 NK D V E +E+ I + ++ + +SA G CD V Sbjct: 296 NKWDIVNKETGTMEEYTRSIRERFSYMPYAQVLFLSALTGARCDKVF 342 >gi|255325164|ref|ZP_05366270.1| GTP-binding protein HflX [Corynebacterium tuberculostearicum SK141] gi|255297729|gb|EET77040.1| GTP-binding protein HflX [Corynebacterium tuberculostearicum SK141] Length = 497 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G TNAGKS+L+N GA V + T R Q+VF DT G Sbjct: 271 IAIAGYTNAGKSSLINAMTGAGVLVEDALFATLDPTTRRATLADGRQVVFTDTVGFVRHL 330 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLILI 136 + + + + ADI+ VVD + I+D++ E +++ I++ Sbjct: 331 PTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNQVIYDIVSETGEQAPPEIIV 390 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +NKID P L E + + E VSA G G D++ Sbjct: 391 INKIDQADPLVLAELRHVLDH----EDVVYVSARTGEGIDEL 428 >gi|242255902|gb|ACS88935.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLNL 168 >gi|122701581|emb|CAL88180.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A + + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEK---ERAYVFSSF-GMPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122701391|emb|CAL88085.1| GTPase [Helicobacter pylori] gi|122701439|emb|CAL88109.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|122700833|emb|CAL88005.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|322499842|emb|CBZ34915.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 497 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 12/142 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA+VG TN+GK++LVNR VG + + + TTR + + K ++ +DT G+ Sbjct: 231 VAIVGRTNSGKTSLVNRLVGYERNRAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQR 290 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 + + + LS + I++A +V +V D+ E N +D+ L ++A+ +L N Sbjct: 291 YRTDREFLSRIHSLSLNEIRYAHVVIVVFDAT-EGHPNKYDMSILHKVAQEGRPFVLCAN 349 Query: 139 KIDCVKPERLLEQAEIANKLVF 160 K D V L+Q+ A + F Sbjct: 350 KWDAV-----LDQSATAEAIDF 366 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 12/157 (7%) Query: 25 VALVGATNAGKSTLVNRF-----VGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 VA+VG N+GKS+L N + AK +IV TR V + + +DTPG Sbjct: 31 VAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAALDDLHFTVIDTPG 90 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K ++ ++ T++ AD V ++ HDL++ +A + L++NK Sbjct: 91 LIGGK------LVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPACLLVNK 144 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D V E + N+L + K SA K G D Sbjct: 145 MDLVPEEEESLVLDAYNRL-GLGKAVPFSARKREGLD 180 >gi|122700881|emb|CAL88029.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNTLNL 168 >gi|4467647|emb|CAB37775.1| GTP-binding protein homologue [Helicobacter pylori] gi|4467649|emb|CAB37776.1| GTP-binding protein homologue [Helicobacter pylori] gi|99905845|gb|ABF68617.1| YphC [Helicobacter pylori] gi|99905847|gb|ABF68618.1| YphC [Helicobacter pylori] gi|122700649|emb|CAL87913.1| GTPase [Helicobacter pylori] gi|122700651|emb|CAL87914.1| GTPase [Helicobacter pylori] gi|122700693|emb|CAL87935.1| GTPase [Helicobacter pylori] gi|122701359|emb|CAL88069.1| GTPase [Helicobacter pylori] gi|122701367|emb|CAL88073.1| GTPase [Helicobacter pylori] gi|122701385|emb|CAL88082.1| GTPase [Helicobacter pylori] gi|122701489|emb|CAL88134.1| GTPase [Helicobacter pylori] gi|122701501|emb|CAL88140.1| GTPase [Helicobacter pylori] gi|122701513|emb|CAL88146.1| GTPase [Helicobacter pylori] gi|122701521|emb|CAL88150.1| GTPase [Helicobacter pylori] gi|122701529|emb|CAL88154.1| GTPase [Helicobacter pylori] gi|122701553|emb|CAL88166.1| GTPase [Helicobacter pylori] gi|122701569|emb|CAL88174.1| GTPase [Helicobacter pylori] gi|122701571|emb|CAL88175.1| GTPase [Helicobacter pylori] gi|122702219|emb|CAL88300.1| GTPase [Helicobacter pylori] gi|122702607|emb|CAL88493.1| GTPase [Helicobacter pylori] gi|122702631|emb|CAL88505.1| GTPase [Helicobacter pylori] gi|122702777|emb|CAL88578.1| GTPase [Helicobacter pylori] gi|242255852|gb|ACS88910.1| GTPase [Helicobacter pylori] gi|242255872|gb|ACS88920.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|292806480|gb|ADE42370.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSVLDL 168 >gi|170757031|ref|YP_001782064.1| GTP-binding protein EngA [Clostridium botulinum B1 str. Okra] gi|229710728|sp|B1IIN2|DER_CLOBK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169122243|gb|ACA46079.1| ribosome-associated GTPase EngA [Clostridium botulinum B1 str. Okra] Length = 439 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G +++IV TR + + +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M R + I+ A+++ +VD L ++ + + K ++L++NKID + Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +S+++ G D+L+ Sbjct: 126 KDEN--NAYEFYN--LGIGDPVTISSSQALGLGDMLD 158 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A +G N GKS+L+N+ +G + IV+ TTR + V + + +DT G+ Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++I+ AD+ L++D+ + ++ + +++I+NK D Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYAHDINKAILVIVNKWD 298 Query: 142 CV-KPERLLE--QAEIANKLVFI--EKTFMVSATKGHGCDDVL 179 V K ++ ++ + E+ L F+ K +SA G VL Sbjct: 299 LVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRVVKVL 341 >gi|122700713|emb|CAL87945.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|122700593|emb|CAL87885.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|99905875|gb|ABF68632.1| YphC [Helicobacter pylori] gi|122701423|emb|CAL88101.1| GTPase [Helicobacter pylori] gi|122701475|emb|CAL88127.1| GTPase [Helicobacter pylori] gi|122702479|emb|CAL88430.1| GTPase [Helicobacter pylori] gi|122702505|emb|CAL88443.1| GTPase [Helicobacter pylori] gi|122702697|emb|CAL88538.1| GTPase [Helicobacter pylori] gi|122702753|emb|CAL88566.1| GTPase [Helicobacter pylori] gi|292806470|gb|ADE42365.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806532|gb|ADE42396.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806612|gb|ADE42436.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806652|gb|ADE42456.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806678|gb|ADE42469.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453519|emb|CBL87869.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|4467651|emb|CAB37777.1| GTP-binding protein homologue [Helicobacter pylori] gi|122701565|emb|CAL88172.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|71902193|ref|ZP_00684209.1| Small GTP-binding protein domain [Xylella fastidiosa Ann-1] gi|71728048|gb|EAO30257.1| Small GTP-binding protein domain [Xylella fastidiosa Ann-1] Length = 450 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TN+GKSTL N GA T VR IV S ++ DT G + Sbjct: 201 IALVGYTNSGKSTLFNALTGASAYTADQLFATLDPKVRRIVLPGSSAMLA-DTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSH---RELKVN-IHDLLKEIAKRSSRLILILN 138 H+L+ R + S + AD++ V+D+ RE +++ + ++L+ I +L+ N Sbjct: 258 HLPHELVAAFRSTLSEAREADLLLHVIDAADPLREERIDQVDEVLQAIGAGELPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 KIDC++ + + A+ + +SA GHG + Sbjct: 318 KIDCIEGAEVRQDAQDGIPDQARRERVWLSARHGHGVE 355 >gi|317453511|emb|CBL87865.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAILNALNL 168 >gi|242255946|gb|ACS88957.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G +N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQSNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|227495177|ref|ZP_03925493.1| possible GTP-binding protein HflX [Actinomyces coleocanis DSM 15436] gi|226831629|gb|EEH64012.1| possible GTP-binding protein HflX [Actinomyces coleocanis DSM 15436] Length = 543 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 14/191 (7%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI +D + + RSG VA+ G TNAGKSTL+NR GA+V + T V Sbjct: 295 EIAAMKPARDTQRQSRRSGEIPSVAIAGYTNAGKSTLLNRLTGAEVMVQNALFATLDPTV 354 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--- 118 R ++ DT G + R + + AD++ VVD+ + Sbjct: 355 RQTKTDDGRLYTLTDTVGFVRNLPTQLVEAFRSTLEEVGDADLIVHVVDAAHPDPMGQIK 414 Query: 119 -IHDLLKEI-AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +H + + I I+ LNK D L +A++A + + VSA G G Sbjct: 415 AVHAVFETIDGAMEIPEIIALNKAD------LATEADLAVLRSLLPNSVAVSAHTGAGMG 468 Query: 177 DVLNYLCSTLP 187 D+ + LP Sbjct: 469 DLQELIAQMLP 479 >gi|122702871|emb|CAL88625.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDN 126 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ++ A + K+F +S + G +++ + S L L Sbjct: 127 DKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122702471|emb|CAL88426.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDVKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLDTLNL 168 >gi|122700791|emb|CAL87984.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALDL 168 >gi|294631824|ref|ZP_06710384.1| GTP-binding protein HflX [Streptomyces sp. e14] gi|292835157|gb|EFF93506.1| GTP-binding protein HflX [Streptomyces sp. e14] Length = 496 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 12/191 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + ++ VA+ G TNAGKS+L+NR GA V + T V Sbjct: 253 EIAEMKTGRELKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 312 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 313 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPNPEEQLA 372 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++++ I+++NK D P + +L+ +EK + VSA G G Sbjct: 373 AVREVIRDVGATDVPEIVVVNKADAADP-------LVLQRLLRVEKHSIAVSARTGRGIP 425 Query: 177 DVLNYLCSTLP 187 ++L + + LP Sbjct: 426 ELLALIDAELP 436 >gi|227822913|ref|YP_002826885.1| GTP-binding protein EngA [Sinorhizobium fredii NGR234] gi|254783163|sp|C3MG60|DER_RHISN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|227341914|gb|ACP26132.1| GTP-binding protein, essential for cell growth [Sinorhizobium fredii NGR234] Length = 476 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR VG K+++V TR G + + +DT G+ + Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEQS 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A DS M + I AD+ V+D+ L L + + +R +I++ NK + Sbjct: 64 APDSLQGRMWAQTEQAIDEADLSLFVIDAKAGLTPADETLAEMLRRRGKPVIVVANKSEA 123 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 22/191 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 +E + D ++ VA+VG NAGKSTL+NRF+G + + TR + + Sbjct: 192 DEESEPAYDKTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWEWRG 251 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I DT G+ ++ KL + + I+ A+ V ++ D+ + ++ + Sbjct: 252 RTIKMFDTAGMRRKAKVQEKLEKLSVADALRAIRFAETVVIIFDATIPFEKQDLQIVDLV 311 Query: 127 AKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + +L NK D V K ERLL QA + +S G+G Sbjct: 312 LREGRAAVLAFNKWDLVEDWQAVLADLREKTERLLPQARGI-------RAVPISGHTGYG 364 Query: 175 CDDVLNYLCST 185 D ++ + T Sbjct: 365 LDRLMQAIIET 375 >gi|225077529|ref|ZP_03720728.1| hypothetical protein NEIFLAOT_02592 [Neisseria flavescens NRL30031/H210] gi|284800154|ref|ZP_06390566.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703] gi|224951149|gb|EEG32358.1| hypothetical protein NEIFLAOT_02592 [Neisseria flavescens NRL30031/H210] gi|284795881|gb|EFC51228.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703] Length = 335 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVGA N GKS+L+N G ++IVT TTR VR ++ + +DT G+ Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 D ++ I S + AD+ +++D + +L + Sbjct: 280 DVVEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNSL 321 >gi|218282475|ref|ZP_03488734.1| hypothetical protein EUBIFOR_01316 [Eubacterium biforme DSM 3989] gi|218216571|gb|EEC90109.1| hypothetical protein EUBIFOR_01316 [Eubacterium biforme DSM 3989] Length = 435 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 7/172 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VG N GKST+ NR +G + SIV TR + G V +DT GI Sbjct: 4 GTVAIVGRPNVGKSTIFNRLIGQRKSIVDDTPGVTRDRIYGEVEWLTQTFRLIDTGGIQI 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ + + I+ AD++ + + + + + +++ K +IL NK+D Sbjct: 64 EDQAFAQEINMQVDIAIEEADVIIFLTSAKEGVMTDDTVIARKLQKCKKPVILACNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP---LAPW 191 PE + E + + ++S G G D+L+ + LP L+P+ Sbjct: 123 -NPEMQMNVYEFY--ALGLGDPVVLSGAHGIGLGDLLDIVLEKLPEKNLSPY 171 Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 14/140 (10%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S CV +G N GKS+LVN + IV++ TTR + + + + +DT GI Sbjct: 176 SFCV--IGRPNVGKSSLVNSILKEDRVIVSNVEGTTRDAIDTPFHVDDKEYMIIDTAGIR 233 Query: 82 NAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLI 134 Y K I + S I +++V ++D + I D K +A +I Sbjct: 234 KKGKIYENIEKYSILRALSAIDRSNVVLFLIDGEK----GIRDQDKHVAGLAHDAGKGVI 289 Query: 135 LILNKIDCV-KPERLLEQAE 153 ++ NK D V K E+ + + E Sbjct: 290 IVYNKWDTVEKDEKTMAKIE 309 >gi|162149029|ref|YP_001603490.1| GTP-binding protein EngA [Gluconacetobacter diazotrophicus PAl 5] gi|161787606|emb|CAP57202.1| GTP-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 479 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 77/139 (55%), Gaps = 8/139 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG NAGKSTL+NR +G + I + TR V ++ ++ I +DT G+ Sbjct: 213 LAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVTVLLHDEHGPIQLVDTAGLRRRG 272 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 ++S K+ + + +K A++V L +D+ L V+ DL + + +R R +L LNK Sbjct: 273 RIEESLEKMSVSATIEALKMAEVVVLTLDA--TLGVHEQDLQIARLIEREGRCCVLALNK 330 Query: 140 IDCVKPERLLEQAEIANKL 158 D V+ +R+ + I++++ Sbjct: 331 WDAVE-DRIATRQAISDRI 348 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 V + G N GKSTL NR VG + ++V TR + ++ +DT G+ Sbjct: 15 VVVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEAETVMRGRRVRLVDTAGLEEA 74 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A D+ + M S S + AD+V +D+ + + ++ ++LI NK + Sbjct: 75 AADTLYGRMRASSESAVAQADLVLFCIDTRAGITPADEHFAAWLRRQGRPVLLIANKAEG 134 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R A + + + +SA G G D++ + LP Sbjct: 135 ----RQGAAAAMEAFALGLGTPLAISAEHGEGLSDLMGEIADRLP 175 >gi|122700905|emb|CAL88041.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISALIDAILNTLNL 168 >gi|122700707|emb|CAL87942.1| GTPase [Helicobacter pylori] gi|122700725|emb|CAL87951.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALSL 168 >gi|111115001|ref|YP_709619.1| tRNA modification GTPase TrmE [Borrelia afzelii PKo] gi|122956413|sp|Q0SNY5|MNME_BORAP RecName: Full=tRNA modification GTPase mnmE gi|110890275|gb|ABH01443.1| thiophene and furan oxidation protein [Borrelia afzelii PKo] Length = 464 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 7/120 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 + L G+ NAGKS+L N F+ SIV+ TTR + S + I+F DT G+ + Sbjct: 225 LVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLRD 282 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL-KEIAKRSSRLILILNKID 141 A + +L I S S IK A +V V+D L + DLL + K +S+++ +LNKID Sbjct: 283 ADNFVERLGIEKSNSLIKEASLVIYVIDISSNLTRD--DLLFIDSNKSNSKILFVLNKID 340 >gi|122702761|emb|CAL88570.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A + + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEK---ERAYMFSSFG-IPKSFNISVSHNRGISALIDAILRALNL 168 >gi|122701447|emb|CAL88113.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D+V VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLVLYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID +R E+A A + K+F +S + G +++ + L L Sbjct: 122 NKIDN---DREKERA-YAFSSFGMPKSFNISVSHNRGISALIDAILRALDL 168 >gi|91977473|ref|YP_570132.1| GTP-binding protein EngA [Rhodopseudomonas palustris BisB5] gi|123748964|sp|Q135K8|DER_RHOPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91683929|gb|ABE40231.1| Small GTP-binding protein domain [Rhodopseudomonas palustris BisB5] Length = 460 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NAK 84 A++G N GKSTL NR VG K+++V TR G + + +DT G+ AK Sbjct: 6 AIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTIIDTAGLDEGAK 65 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 S M + + + I+ AD + V D+ L N + A+R+++ ++L+ NK + Sbjct: 66 GSLTARMQQQTETAIELADALMFVFDARAGLTPNDR-AFADFARRANKPVVLVANKSEG- 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + + + + +SA G G ++ + L + +P Sbjct: 124 ---KAGEIGAMESYALGLGDPVQISAEHGEGLSELYDALRALMP 164 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKST +NR +G + + + TTR + V+ K DT G+ Sbjct: 191 VAIVGRPNAGKSTFINRLLGEDRLLTSPEAGTTRDSIAVEVNWKGRDFRIFDTAGLRRRS 250 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 ++ KL + + ++ A++V L++DS E + I DL I + L++ +N Sbjct: 251 RIEEKLEKLSVADALRAVRFAEVVVLMMDSQNRFEEQDLRIADL---IEREGRALVIAVN 307 Query: 139 KIDCVK 144 K D V+ Sbjct: 308 KWDLVE 313 >gi|170581229|ref|XP_001895594.1| Hypothetical GTP-binding protein E02H1.2 in chromosome II, putative [Brugia malayi] gi|158597410|gb|EDP35567.1| Hypothetical GTP-binding protein E02H1.2 in chromosome II, putative [Brugia malayi] Length = 399 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 11/129 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS L N+ V A V+ V+ ++ TT+ IV+E SQ+VF+D+PG + Sbjct: 25 VAVIGPPNVGKSLLTNKLVKAGVAAVSSQMDTTQKNQTAIVTEGSSQLVFVDSPGTVGIR 84 Query: 85 DSYHKLMIRLSWSTI--------KHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLIL 135 + + ++R S I + AD + +V D+ +H +L + + R L Sbjct: 85 --HAREIVRSPDSRILSDPEHAVEQADHILVVHDATICTDYILHRVLHMLHRYRQIPSSL 142 Query: 136 ILNKIDCVK 144 +LNKID VK Sbjct: 143 VLNKIDQVK 151 >gi|146089409|ref|XP_001470375.1| GTP-binding protein-like protein [Leishmania infantum] gi|134070408|emb|CAM68746.1| putative ras-like small GTPases [Leishmania infantum JPCM5] Length = 497 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 12/142 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA+VG TN+GK++LVNR VG + + + TTR + + K ++ +DT G+ Sbjct: 231 VAIVGRTNSGKTSLVNRLVGYERNRAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQR 290 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 + + + LS + I++A +V +V D+ E N +D+ L ++A+ +L N Sbjct: 291 YRTDREFLSRIHSLSLNEIRYAHVVIVVFDAT-EGHPNKYDMSILHKVAQEGRPFVLCAN 349 Query: 139 KIDCVKPERLLEQAEIANKLVF 160 K D V L+Q+ A + F Sbjct: 350 KWDAV-----LDQSATAEAIDF 366 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 12/157 (7%) Query: 25 VALVGATNAGKSTLVNRF-----VGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 VA+VG N+GKS+L N + AK +IV TR V + +DTPG Sbjct: 31 VAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAALDNLHFTVIDTPG 90 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K ++ ++ T++ AD V ++ HDL++ +A + L++NK Sbjct: 91 LIGGK------LVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPACLLVNK 144 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D V E ++ N+L + K SA K G D Sbjct: 145 MDLVPEEEESLVLDVYNRL-GLGKAVPFSARKREGLD 180 >gi|115524769|ref|YP_781680.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris BisA53] gi|115518716|gb|ABJ06700.1| GTP-binding protein, HSR1-related protein [Rhodopseudomonas palustris BisA53] Length = 455 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 19/233 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A+V T +R +V + + DT G + Sbjct: 223 VVALVGYTNAGKSTLFNRLTRAEVQAADMLFATLDPTLRALVLPHGGKAMLSDTVGFISN 282 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIA---KRSSRLILI 136 + R + + AD++ V D E + ++ +L+++ S +I + Sbjct: 283 LPTQLVAAFRATLEEVLEADLILHVRDISHEDADAQQDDVDAVLRQLGIAPGTGSPIIEV 342 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL----NYLCSTLPLAPWV 192 NKID PE+ E IA + +VSA G G D +L + L T Sbjct: 343 WNKIDRFSPEQQEELQNIAARRDSEHPCHLVSAVTGQGLDALLQAIEDRLAETRTTLDLT 402 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 A + + H AE+ L K++ +T + +E K +++ R Sbjct: 403 VDAADGAGVSWLHRNAEV--------LDKQLQDGRYAMTVRVDETKRDAVIAR 447 >gi|332976009|gb|EGK12880.1| tRNA modification GTPase [Psychrobacter sp. 1501(2011)] Length = 463 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 15/176 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKS+L+N G + +IVT TTR ++ + I DT G+ + Sbjct: 220 VVLAGRPNAGKSSLLNSLAGQERAIVTDVAGTTRDTLQETIVLNGLTIHLTDTAGLRDTT 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---------SRLIL 135 D+ ++ I + + I AD++ LV D ++ N +L E+ + ++L+L Sbjct: 280 DAVERIGIERARTAIHQADLLLLVHDLSKQ--ANPLELATELFGTTASGTPNFDPAKLLL 337 Query: 136 ILNKIDCVKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 I NK D V+ + + +++K+ V + VS G D ++ LC + P Sbjct: 338 IGNKRDLVEQQ---QSQNLSDKVDVSGYEQVNVSCETSEGIDCLIATLCDKVGFHP 390 >gi|254779963|ref|YP_003058070.1| tRNA modification GTPase TrmE [Helicobacter pylori B38] gi|254001876|emb|CAX30126.1| tRNA modification GTPase [Helicobacter pylori B38] Length = 450 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNTQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ Sbjct: 253 EEVIELKGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFT 312 Query: 122 LLKEIAKRSSRLILILNKID 141 ++ + + I++LNK D Sbjct: 313 IIDALNRAKKPCIVVLNKND 332 >gi|170760623|ref|YP_001787836.1| GTP-binding protein EngA [Clostridium botulinum A3 str. Loch Maree] gi|238688523|sp|B1KX71|DER_CLOBM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169407612|gb|ACA56023.1| ribosome-associated GTPase EngA [Clostridium botulinum A3 str. Loch Maree] Length = 439 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G +++IV TR + + +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M R + I+ A+++ +VD L ++ + + K ++L++NKID + Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +S+++ G D+L+ Sbjct: 126 KDEN--NAYEFYN--LGIGDPVTISSSQALGLGDMLD 158 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A +G N GKS+L+N+ +G + IV+ TTR + V + + +DT G+ Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++I+ AD+ L++D+ + ++ + +++I+NK D Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILMIDAIEGISEQDQKIIGYAHDINKAILVIVNKWD 298 Query: 142 CV-KPERLLE--QAEIANKLVFI--EKTFMVSATKGHGCDDVL 179 V K ++ ++ + E+ L F+ K +SA G VL Sbjct: 299 LVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRVVKVL 341 >gi|15896965|ref|NP_350314.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum ATCC 824] gi|21363021|sp|Q97CW2|MNME_CLOAB RecName: Full=tRNA modification GTPase mnmE gi|15026841|gb|AAK81654.1|AE007868_10 Predicted GTPase, ThdF family [Clostridium acetobutylicum ATCC 824] gi|325511142|gb|ADZ22778.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum EA 2018] Length = 459 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 7/124 (5%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N + K +IVT TTR ++ ++ I +DT G Sbjct: 221 REGLNTVIIGKPNVGKSSLLNLLLDEKRAIVTDIPGTTRDVIEEYINISGIPIKIVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILIL 137 I +D K+ + S +++AD++ ++DS + K++ DL EI + + I++L Sbjct: 281 IRETEDVIEKMGVERSKEKMENADLIIFMIDSSK--KIDAEDL--EIIDYIKDKKYIVLL 336 Query: 138 NKID 141 NK+D Sbjct: 337 NKVD 340 >gi|309782315|ref|ZP_07677042.1| GTP-binding protein HflX [Ralstonia sp. 5_7_47FAA] gi|308918933|gb|EFP64603.1| GTP-binding protein HflX [Ralstonia sp. 5_7_47FAA] Length = 402 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A+ T + R + E +V DT G Sbjct: 188 SVSLVGYTNAGKSTLFNALTKARAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRD 247 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ + +L EI IL++N Sbjct: 248 LPTQLVAAFRATLEETVHADVLLHVVDAASTVKHEQME-QVDRVLDEIDASGIPQILVMN 306 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 KID + R+ ++ + + F VSA +G G D + L T Sbjct: 307 KIDAAEELRVAGPRIERDETGAVRRVF-VSAIEGTGLDLLREALVET 352 >gi|85708673|ref|ZP_01039739.1| GTPase [Erythrobacter sp. NAP1] gi|85690207|gb|EAQ30210.1| GTPase [Erythrobacter sp. NAP1] Length = 432 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 24/210 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL NR GA+V T +R I + + DT G + Sbjct: 204 IALVGYTNAGKSTLFNRLTGAEVMAEDLLFATLDPTMRAISLPGVEKAILSDTVGFISDL 263 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEI----AKRSSRLILI 136 + R + + ADI+C V D +H K + ++L ++ A+ I I Sbjct: 264 PTQLVAAFRATLEEVTGADIICHVRDMANPAHSAQKKQVMEVLSDLGVVDAESGESEIPI 323 Query: 137 L---NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L NK D + + L E E A + ++SA+ G G + + + L Sbjct: 324 LEVWNKADLLSEDTLTELREAAAG----QDAVLLSASSGEGVEAFADKIADML-----TA 374 Query: 194 SADQISDLPMFHFTAEITREKLFLHLHKEI 223 SA +++ A R +LH H ++ Sbjct: 375 SAKEVT----ITLPASDGRRLAWLHAHGDV 400 >gi|242255964|gb|ACS88966.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|168180594|ref|ZP_02615258.1| GTP-binding protein [Clostridium botulinum NCTC 2916] gi|226949875|ref|YP_002804966.1| GTP-binding protein EngA [Clostridium botulinum A2 str. Kyoto] gi|254783146|sp|C1FSU2|DER_CLOBJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|182668460|gb|EDT80439.1| GTP-binding protein [Clostridium botulinum NCTC 2916] gi|226841615|gb|ACO84281.1| ribosome-associated GTPase EngA [Clostridium botulinum A2 str. Kyoto] gi|322806789|emb|CBZ04358.1| GTP-binding protein EngA [Clostridium botulinum H04402 065] Length = 439 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ G +++IV TR + + +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M R + I+ A+++ +VD L ++ + + K ++L++NKID + Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +S+++ G D+L+ Sbjct: 126 KDEN--NAYEFYN--LGIGDPVTISSSQALGLGDMLD 158 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A +G N GKS+L+N+ +G + IV+ TTR + V + + +DT G+ Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++I+ AD+ L++D+ + ++ + +++I+NK D Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYAHDINKAILVIVNKWD 298 Query: 142 CV-KPERLLE--QAEIANKLVFI--EKTFMVSATKGHGCDDVL 179 V K ++ ++ + E+ L F+ K +SA G VL Sbjct: 299 LVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRVVKVL 341 >gi|153939462|ref|YP_001391817.1| GTP-binding protein EngA [Clostridium botulinum F str. Langeland] gi|166224329|sp|A7GGA7|DER_CLOBL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152935358|gb|ABS40856.1| ribosome-associated GTPase EngA [Clostridium botulinum F str. Langeland] gi|295319842|gb|ADG00220.1| ribosome-associated GTPase EngA [Clostridium botulinum F str. 230613] Length = 439 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N+ G +++IV TR + + +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M R + I+ A+++ +VD L ++ + + K ++L++NKID + Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +S+++ G D+L+ Sbjct: 126 KDEN--NAYEFYN--LGIGDPVTISSSQALGLGDMLD 158 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 78/157 (49%), Gaps = 8/157 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A +G N GKS+L+N+ +G + IV+ TTR + V + + +DT G+ Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++I+ AD+ L++D+ + ++ + +++I+NK D Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYAHDINKAILVIVNKWD 298 Query: 142 CV-KPERLLE--QAEIANKLVFI--EKTFMVSATKGH 173 V K ++ ++ + E+ L F+ K +SA G Sbjct: 299 LVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQ 335 >gi|122701357|emb|CAL88068.1| GTPase [Helicobacter pylori] gi|122701537|emb|CAL88158.1| GTPase [Helicobacter pylori] gi|292806600|gb|ADE42430.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122701459|emb|CAL88119.1| GTPase [Helicobacter pylori] gi|122701697|emb|CAL88238.1| GTPase [Helicobacter pylori] gi|122702709|emb|CAL88544.1| GTPase [Helicobacter pylori] gi|242255954|gb|ACS88961.1| GTPase [Helicobacter pylori] gi|292806420|gb|ADE42340.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806432|gb|ADE42346.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806488|gb|ADE42374.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806530|gb|ADE42395.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806648|gb|ADE42454.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806658|gb|ADE42459.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|108563803|ref|YP_628119.1| tRNA modification GTPase TrmE [Helicobacter pylori HPAG1] gi|123073715|sp|Q1CRH7|MNME_HELPH RecName: Full=tRNA modification GTPase mnmE gi|107837576|gb|ABF85445.1| putative thiophene/furan oxidation protein [Helicobacter pylori HPAG1] Length = 461 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 204 QIASFKDLLDFSNAQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 263 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ K ++ +DT GI + D +L I S ++++ DI+ V D + L+ Sbjct: 264 EEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFT 323 Query: 122 LLKEIAKRSSRLILILNKID 141 ++ + + I++LNK D Sbjct: 324 IIDALNRAKKPCIVVLNKND 343 >gi|329943260|ref|ZP_08292034.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10] gi|332287839|ref|YP_004422740.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC] gi|313848411|emb|CBY17415.1| putative GTP-binding protein [Chlamydophila psittaci RD1] gi|325506575|gb|ADZ18213.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC] gi|328814807|gb|EGF84797.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10] gi|328915100|gb|AEB55933.1| GTP-binding protein engA [Chlamydophila psittaci 6BC] Length = 474 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 15/162 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 +A++G N GKS+L NR ++IV + TTR + G + + +DT G+ ++ Sbjct: 4 IAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDKDS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR----SSRLILILNK 139 +D + K + + + + ADI+ LV+D ++ I +L EIAK+ LIL+ NK Sbjct: 64 EDHFQKHIYKQALAGANEADILLLVID----IRCGITELDAEIAKQLLCLKKPLILVANK 119 Query: 140 IDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D +K E R+ E +I I VSA+ D++++ Sbjct: 120 ADTLKDEYRIHELYKIG-----ISDILAVSASHDKHIDNLIH 156 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 9/148 (6%) Query: 8 FFNEHKDF----VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 + NE DF V+D +AL+G N GKS+++N + + I+ + TTR + Sbjct: 195 YENEDSDFSVSSVEDKPLK--IALIGRPNVGKSSIINALLNEERCIIDNIPGTTRDNIDI 252 Query: 64 IVSEKESQIVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + S + +F+DT G+ + K+S + + I ADI LV+D+ L Sbjct: 253 LYSYNDRSYLFIDTAGLRKMKSVKNSIEWISSSRTEKAIARADICLLVIDATHHLSSYDK 312 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERL 148 +L I+K+ I+++NK D ++ R+ Sbjct: 313 RILSLISKQKKPHIILVNKWDLIQGVRM 340 >gi|307299325|ref|ZP_07579126.1| ribosome-associated GTPase EngA [Thermotogales bacterium mesG1.Ag.4.2] gi|306915121|gb|EFN45507.1| ribosome-associated GTPase EngA [Thermotogales bacterium mesG1.Ag.4.2] Length = 441 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 15/167 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKS++ N VG+ S+VT TTR V V I F+DT GI K Sbjct: 183 IAIVGKPNAGKSSIFNWIVGSPRSLVTEVSGTTRDTVDETVEVDGIPITFIDTAGI--RK 240 Query: 85 DSYHKLM------IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 S K+M + + ++ +DI+ +V+DS + + K I + N Sbjct: 241 KSKVKVMNVEYYSVMRAIDALERSDIMVMVIDSADGVGNQDQRIAGLAEKNGKATIAVFN 300 Query: 139 KIDCVKPER---LLEQAEIANKLVFIEKT--FMVSATKGHGCDDVLN 180 K D V R LL L FI+ + S G G D++++ Sbjct: 301 KCDLVDERRRKALLRT--FKQDLYFIDYSPVIFTSTLTGEGMDELID 345 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 V ++G N GKSTL NR VG + +IV TR G V+ ++ +DT G+F N Sbjct: 3 TVLIIGRPNVGKSTLFNRLVGGRRAIVDDLPGVTRDFTVGRVNWQQRTFQLVDTCGLFEN 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ + M ++ + D++ VVD L L + K+ +I + NK++ Sbjct: 63 PENIVEEKMKEVTLELLSEGDLILFVVDGRFGLTSADQVLADYLRKQRIEVIFVANKVE- 121 Query: 143 VKPE 146 PE Sbjct: 122 -NPE 124 >gi|292806434|gb|ADE42347.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSALNL 168 >gi|256392245|ref|YP_003113809.1| small GTP-binding protein [Catenulispora acidiphila DSM 44928] gi|256358471|gb|ACU71968.1| small GTP-binding protein [Catenulispora acidiphila DSM 44928] Length = 493 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 56 VLAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAHWNGRRFSLVDTGGWERD 115 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + + + I AD V VVD+ + +++ + K +IL NK+D Sbjct: 116 VEGMAKAVAFQAEAAIHAADAVMFVVDATVGITDTDEAVVRVLRKAGKPVILAANKVDDQ 175 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E AE+ N + + + F VSA G G D+L+ + LP P Sbjct: 176 RTE--ANAAELWN--LGLGEPFAVSALHGRGSGDLLDAVLDALPATP 218 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + +V TTR V ++ F+DT GI Sbjct: 232 VALVGKPNVGKSSLLNKLAGEERVVVDATAGTTRDPVDELIDLGGKTWRFVDTAGIRRRV 291 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + I A++ ++VD+ L ++ +A+ L++ N Sbjct: 292 HQTYGADFYASLRTQ---GAIDKAEVAVVLVDASDSLTEQDLRIITMVAEAGRALVIAYN 348 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 349 KWDLMDEER 357 >gi|240146998|ref|ZP_04745599.1| ribosome-associated GTPase EngA [Roseburia intestinalis L1-82] gi|257200843|gb|EEU99127.1| ribosome-associated GTPase EngA [Roseburia intestinalis L1-82] gi|291535193|emb|CBL08305.1| ribosome-associated GTPase EngA [Roseburia intestinalis M50/1] gi|291539724|emb|CBL12835.1| ribosome-associated GTPase EngA [Roseburia intestinalis XB6B4] Length = 441 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 10/179 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G ++SIV TR + V+ + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNVLAGERISIVKDTPGVTRDRIYADVTWLDYHFTMIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +KD M + I AD++ + D + L+ + + + + ++L++NK+D Sbjct: 65 SKDIILSQMREQAEIAIATADVIIFLTDVRQGLQDSDSKVADMLRRSGKPVVLVVNKVDS 124 Query: 143 VKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 E+ + E N + I + +SA+ G D+L+ + P Y+ D+ D Sbjct: 125 F--EKFMPDVYEFYN--LGIGDPYPISASSMLGLGDMLDEVVKNFPE----YNKDEAED 175 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G N GKS+L+N+ IV+ TTR + + + VF+DT G+ Sbjct: 180 VAIIGKPNVGKSSLINKLAQEDRVIVSDIAGTTRDAIDTDIRYNGKEYVFIDTAGLRRKN 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+ +V+D+ + + +R +I+ +NK D Sbjct: 240 KIKEEIERYSIIRAVTAVERADVCIIVIDATEGVTEQDAKIAGIAHERGKGIIIAVNKWD 299 Query: 142 CVKPE 146 ++ + Sbjct: 300 AIEKD 304 >gi|144574977|gb|AAZ43562.2| GTP-binding protein EngA [Mycoplasma synoviae 53] Length = 435 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 11/166 (6%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 +A++G N GKSTL NR G K+SIV TR + ++S +I +DT GI Sbjct: 3 NTIAIIGKPNVGKSTLFNRLNGRKISIVDDTPGVTRDRLYEVISWLNKEIKIIDTGGI-E 61 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKI 140 K++ + I++ I+ AD++ V D H E+ N + I +++++ +L L NK+ Sbjct: 62 IKNAPFQEQIQIQAKIAIEEADVIFFVFDGHSEIS-NDDLFIMNILRKANKTVLALANKL 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + K + + + ++ F +SA G G + L+ C L Sbjct: 121 EGNK------DFDYSWYKLGVD-IFPISALHGEGLGEALDEACKHL 159 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G NAGKS+L+N+ SIV+ TTR V+ + K+ +DT GI Sbjct: 172 LSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSVKSFLKIKDQNFEIIDTAGIMRKS 231 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILILNKI 140 +S + + S++ +D+ +V+D+ EL ++ + + +++++NK Sbjct: 232 KLVESVDHYALMRAMSSLVESDLTLVVIDATIDELSHFDSRIIGYALEHNKPIVIVINKW 291 Query: 141 DCVK 144 D V+ Sbjct: 292 DLVE 295 >gi|71894165|ref|YP_278273.1| GTP-binding protein EngA [Mycoplasma synoviae 53] Length = 438 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 11/166 (6%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 +A++G N GKSTL NR G K+SIV TR + ++S +I +DT GI Sbjct: 6 NTIAIIGKPNVGKSTLFNRLNGRKISIVDDTPGVTRDRLYEVISWLNKEIKIIDTGGI-E 64 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKI 140 K++ + I++ I+ AD++ V D H E+ N + I +++++ +L L NK+ Sbjct: 65 IKNAPFQEQIQIQAKIAIEEADVIFFVFDGHSEIS-NDDLFIMNILRKANKTVLALANKL 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + K + + + ++ F +SA G G + L+ C L Sbjct: 124 EGNK------DFDYSWYKLGVD-IFPISALHGEGLGEALDEACKHL 162 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G NAGKS+L+N+ SIV+ TTR V+ + K+ +DT GI Sbjct: 175 LSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSVKSFLKIKDQNFEIIDTAGIMRKS 234 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILILNKI 140 +S + + S++ +D+ +V+D+ EL ++ + + +++++NK Sbjct: 235 KLVESVDHYALMRAMSSLVESDLTLVVIDATIDELSHFDSRIIGYALEHNKPIVIVINKW 294 Query: 141 DCVK 144 D V+ Sbjct: 295 DLVE 298 >gi|305666364|ref|YP_003862651.1| GTP-binding protein EngA [Maribacter sp. HTCC2170] gi|88708356|gb|EAR00593.1| GTP-binding protein EngA [Maribacter sp. HTCC2170] Length = 496 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 11/197 (5%) Query: 10 NEHKDFVQDNSR-SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 N + F + SR S VA+VG N GKST NR + + +IV TR G Sbjct: 51 NINGTFAANYSRMSAIVAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWN 110 Query: 69 ESQIVFLDTPG-IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +DT G + + D + + + + I+ AD + +VD + D+ K + Sbjct: 111 GKEFSIIDTGGYVVGSDDIFEQEIDKQVELAIEEADALIFMVDVETGVTGMDEDVAKILH 170 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K + + L +NK+D K R + E + + + + + +S+ G G ++L+ L LP Sbjct: 171 KVNKPVFLAVNKVDNAK--RAEDAVEFYS--LGLGEYYNLSSINGSGTGELLDALVEMLP 226 Query: 188 LAPWVYSADQISDLPMF 204 + ++ SDLP F Sbjct: 227 -----DNVEEESDLPRF 238 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D V++ S A+VG NAGKS+ +N +G + IVT TTR + + + Sbjct: 227 DNVEEESDLPRFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTKYNRFGFEFN 286 Query: 74 FLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT GI K+ + S I+H+D+ L++D+ R + ++ +A+R+ Sbjct: 287 LVDTAGIRRKSKVKEDLEFYSVMRSVRAIEHSDVCLLLLDATRGFDGQVSNIF-WLAQRN 345 Query: 131 SRLILIL-NKIDCVK 144 ++ I+IL NK D V+ Sbjct: 346 NKGIVILVNKWDLVE 360 >gi|322514868|ref|ZP_08067886.1| ribosome-associated GTPase EngA [Actinobacillus ureae ATCC 25976] gi|322119172|gb|EFX91317.1| ribosome-associated GTPase EngA [Actinobacillus ureae ATCC 25976] Length = 505 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G +V TTR + + Q +DT G+ Sbjct: 219 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 278 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 279 KVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 338 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 339 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 390 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 4/163 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADIGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + AE + + + ++A +G G ++ + +TL Sbjct: 124 DADSHC--AEFYQ--LGLGEVEQIAAAQGRGVTQLIEQVLATL 162 >gi|312879956|ref|ZP_07739756.1| ribosome-associated GTPase EngA [Aminomonas paucivorans DSM 12260] gi|310783247|gb|EFQ23645.1| ribosome-associated GTPase EngA [Aminomonas paucivorans DSM 12260] Length = 447 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 12/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L N +G + ++V+ TTR V ++ K + +DT G+ Sbjct: 178 VALVGRPNVGKSSLFNSLLGEERTLVSDIPGTTRDTVDSLLVWKGMNLRIMDTAGLRRKS 237 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + Y+ + ++ + +D+ +++D+ L L+ + R L+L +NK Sbjct: 238 RVDGALEYYSTV--RTFQAVDRSDVTVVLLDAQELLAEQDKRLVGHVLDRGKGLVLGVNK 295 Query: 140 IDCVKP-----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D + P +R+ ++ LV +SA G G VL Y+ Sbjct: 296 WDLLPPTEDLGDRIRDRIREELPLVRHAPVVFLSAKTGRGVQRVLPYV 343 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 8/177 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKS+L NR +G +++IV TR + G + +DT GI + Sbjct: 3 IIALVGRPNVGKSSLFNRLIGKRLAIVDDIPGVTRDRLYGEAEWDGKRFYLVDTGGIEAS 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + K + ++ +D V ++D + + + + +++ +NK+D Sbjct: 63 SPHPFEKAIEHQVRIALEESDGVVFILDGKDGVTPGDEAIADRLRRAGKPVVVAMNKLDN 122 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA-PWVYSADQ 197 K E L E + V +S D+L+ + + LP A P S D+ Sbjct: 123 DKRDENLAEAYALGFPCV-----LGMSVEHNRNMGDLLDEISALLPEAEPEERSPDE 174 >gi|292806554|gb|ADE42407.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806556|gb|ADE42408.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|209693636|ref|YP_002261564.1| tRNA modification GTPase TrmE [Aliivibrio salmonicida LFI1238] gi|208007587|emb|CAQ77687.1| probable tRNA modification GTPase [Aliivibrio salmonicida LFI1238] Length = 455 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G +IVT TTR ++R + + +DT G+ A Sbjct: 220 VVIAGRPNAGKSSLLNALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I +W I AD V +VD Sbjct: 280 DEVERIGIERAWQEIAQADRVLFMVDG 306 >gi|154505209|ref|ZP_02041947.1| hypothetical protein RUMGNA_02722 [Ruminococcus gnavus ATCC 29149] gi|153794407|gb|EDN76827.1| hypothetical protein RUMGNA_02722 [Ruminococcus gnavus ATCC 29149] Length = 397 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+L+N G VSIV+ K TT + + + +V +DTPG+ + Sbjct: 14 IGIFGKRNAGKSSLINALAGQPVSIVSDFKGTTTDPVKKAMELLPLGPVVLIDTPGLDDT 73 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L I + + DI LV+D + +L++I K+ ++ +NK+D Sbjct: 74 GE-LGSLRIEKTQQILNTTDIALLVIDGQLGITEEDIQILQQIRKKQIPFVIAVNKMDLA 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +L EI+ E+ VSA G ++ L L P Sbjct: 133 PASPVLPD-EISP-----EQVLYVSAAAGTQIHELKELLAKQLGQTP 173 >gi|122702557|emb|CAL88468.1| GTPase [Helicobacter pylori] gi|122702575|emb|CAL88477.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER E+A A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDK-ER--ERA-YAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|4467675|emb|CAB37789.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNAHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKPAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|51598440|ref|YP_072628.1| tRNA modification GTPase TrmE [Borrelia garinii PBi] gi|81610174|sp|Q662I5|MNME_BORGA RecName: Full=tRNA modification GTPase mnmE gi|51573011|gb|AAU07036.1| thiophene and furan oxidation protein [Borrelia garinii PBi] Length = 464 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G+ NAGKS+L N F+ SIV+ TTR + DT G+ +A Sbjct: 225 LVLAGSVNAGKSSLFNMFLKKDRSIVSSYPGTTRDYIEATFELDGILFNLFDTAGLKDAD 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + +L I S S IK A +V V+D L L + K +S+++ +LNKID Sbjct: 285 NFVERLGIEKSNSLIKEASLVIYVIDVSSNLPREDF-LFIDSNKSNSKILFVLNKID 340 >gi|330812748|ref|YP_004357210.1| tRNA modification GTPase, TrmE [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380856|gb|AEA72206.1| putative tRNA modification GTPase, TrmE [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 456 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR I+R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL---LKEIAKRSSRLILILNKI 140 +D K+ + + I AD V LVVD+ + L E+ +++ LI NK Sbjct: 278 EDQVEKIGVERALKAIGEADRVLLVVDATAPEADDPFALWPEFLEVRPDPAKVTLIRNKA 337 Query: 141 DCVKPERLLE 150 D +LE Sbjct: 338 DLTGEAIVLE 347 >gi|292806632|gb|ADE42446.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD +L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLELFREVFKINPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + I K+F +S + G +++ + + L L Sbjct: 127 DKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|292806528|gb|ADE42394.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNVLNL 168 >gi|269795286|ref|YP_003314741.1| hypothetical protein Sked_19830 [Sanguibacter keddieii DSM 10542] gi|269097471|gb|ACZ21907.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Sanguibacter keddieii DSM 10542] Length = 531 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 16/187 (8%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 EH V + R VALVG N GKS+L+N+ G+ +V TTR V ++ K Sbjct: 260 TEHGVAVPNGPRR--VALVGRPNVGKSSLLNKVAGSNRVVVDPTAGTTRDPVDELIQLKG 317 Query: 70 SQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 VF+DT GI D Y L + + I+ A++ +++D+ +L ++ Sbjct: 318 KDWVFVDTAGIRRRVHQTQGADFYASLRTQ---AAIEKAEVAVVLLDASEKLTEQDTRVI 374 Query: 124 KEIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 ++ +++ NK D + +R LE+ EI LV ++ +SA G D ++ Sbjct: 375 SQVIDSGRSVVIAYNKWDLMDEDRRPFLER-EIEKDLVQVQWAPRVNISAATGWHTDRLV 433 Query: 180 NYLCSTL 186 L +L Sbjct: 434 PALERSL 440 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + + +DT G Sbjct: 98 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVSYPAEWGGRRFMLVDTGGWEVD 157 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I AD V VVD+ ++K + K ++L NK+D Sbjct: 158 VAGIEARVAEQAEVAISLADAVMFVVDATVGPTATDEQVVKLLRKSGKPVVLCANKVDGP 217 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + +E+ + + + + VSA G G D+L+ LP Sbjct: 218 RAE--ADASELWS--LGLGEPHPVSALHGRGTGDLLDAAMRKLP 257 >gi|257068243|ref|YP_003154498.1| GTP-binding proten HflX [Brachybacterium faecium DSM 4810] gi|256559061|gb|ACU84908.1| GTP-binding proten HflX [Brachybacterium faecium DSM 4810] Length = 521 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 10/168 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + + + DT G Sbjct: 305 AVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRSTTPDGREFTYADTVGFVRH 364 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSSRLILILNK 139 + R + + AD++ VVD SH + + I +L E+ I++LNK Sbjct: 365 LPTQLVEAFRSTLEEVGGADLLLHVVDASHPDPEGQITAVRAVLGELEGFDVPEIVVLNK 424 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D +PE IA + + +VSA G G ++ + LP Sbjct: 425 ADIAEPE------TIARLRSQVGDSAVVSARTGMGIQELRELIAERLP 466 >gi|311739636|ref|ZP_07713471.1| GTP-binding protein HflX [Corynebacterium pseudogenitalium ATCC 33035] gi|311305452|gb|EFQ81520.1| GTP-binding protein HflX [Corynebacterium pseudogenitalium ATCC 33035] Length = 497 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G TNAGKS+L+N GA V + T R Q+VF DT G Sbjct: 271 IAIAGYTNAGKSSLINAMTGAGVLVEDALFATLDPTTRRATLADGRQVVFTDTVGFVRHL 330 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLILI 136 + + + + ADI+ VVD + I+D++ E +++ I++ Sbjct: 331 PTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNQVIYDIVSETGEQAPPEIIV 390 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +NKID P L E + + E VSA G G D++ Sbjct: 391 INKIDQADPLVLAELRHVLDH----EDVVYVSARTGEGIDEL 428 >gi|222100021|ref|YP_002534589.1| GTP-binding protein engA [Thermotoga neapolitana DSM 4359] gi|254783174|sp|B9K8E0|DER_THENN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221572411|gb|ACM23223.1| GTP-binding protein engA [Thermotoga neapolitana DSM 4359] Length = 439 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 8/132 (6%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 V +VG N GKSTL N+ V + +IV + TR V+ V +DT G+F Sbjct: 2 ATVLIVGKPNVGKSTLFNKLVRKRKAIVEDEEGVTRDPVQDTVEWYGKTFRLVDTCGVFD 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N +D K M ++ + I+ AD+V VVD + L + K +IL+ NK + Sbjct: 62 NPQDVISKKMKEVTLNMIREADLVLFVVDGKNGITKEDESLADFLRKSGVDVILVANKTE 121 Query: 142 C-------VKPE 146 +KPE Sbjct: 122 NQRRFEREIKPE 133 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 82/165 (49%), Gaps = 9/165 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL N + + ++V+ TTR V V + +F+DT G+ Sbjct: 183 IAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGKKYIFVDTAGLRRKS 242 Query: 85 DSYHKLMIRLSW----STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K + R S +I+ AD+ +V+D+ + + + + ++ +++ NK Sbjct: 243 RIEPKTVERYSTYRVVESIERADVAVIVLDATQGITRQDQRIAGLVERKGKASVVVFNKW 302 Query: 141 DCV--KPERLLEQAEI-ANKLVFIEKTFMV--SATKGHGCDDVLN 180 D V + +R E ++ KL F++ + ++ SA KG G + +++ Sbjct: 303 DLVEHREKRYDEFTKLFREKLYFVDYSPLIFTSADKGWGVEKIID 347 >gi|122702459|emb|CAL88420.1| GTPase [Helicobacter pylori] gi|292806608|gb|ADE42434.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122701629|emb|CAL88204.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKSLNLKVAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|122702167|emb|CAL88274.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISALIDAILNTLNL 168 >gi|122701343|emb|CAL88061.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122701433|emb|CAL88106.1| GTPase [Helicobacter pylori] gi|292806486|gb|ADE42373.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLNALDL 168 >gi|56708343|ref|YP_170239.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis SCHU S4] gi|110670814|ref|YP_667371.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis FSC198] gi|224457467|ref|ZP_03665940.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis MA00-2987] gi|254370965|ref|ZP_04986969.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875165|ref|ZP_05247875.1| tRNA modification GTPase trmE family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81597291|sp|Q5NFF3|MNME_FRATT RecName: Full=tRNA modification GTPase mnmE gi|122970893|sp|Q14GV5|MNME_FRAT1 RecName: Full=tRNA modification GTPase mnmE gi|56604835|emb|CAG45916.1| tRNA modification GTPase trmE family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321147|emb|CAL09299.1| tRNA modification GTPase trmE family protein [Francisella tularensis subsp. tularensis FSC198] gi|151569207|gb|EDN34861.1| hypothetical protein FTBG_01711 [Francisella tularensis subsp. tularensis FSC033] gi|254841164|gb|EET19600.1| tRNA modification GTPase trmE family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159580|gb|ADA78971.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis NE061598] Length = 450 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-------AKRSSRLILILNK 139 I+ + I+ AD V V D + +V D +KEI + + + NK Sbjct: 279 IESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSD-IKEIIPEFYDQIPKDIDITYVHNK 337 Query: 140 IDCVK 144 ID +K Sbjct: 338 IDLLK 342 >gi|328472592|gb|EGF43455.1| GTP-binding protein Der [Vibrio parahaemolyticus 10329] Length = 498 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 12/170 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL NR + ++V TR G ++E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGGIDG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ M S + I AD+V +VD L + + K +L++NKID Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTSADEAIAAHLRKIEKPAMLVVNKIDG 123 Query: 143 VKPERLLEQAEIANK-LVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + + A A+ + ++ + ++A G G +L LAP+ Sbjct: 124 IDAD-----AACADFWQLGVDDMYQIAAAHGRGVTALLER-----ALAPF 163 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 212 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRRG 271 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 272 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 331 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + + E+ +L F++ + +SA G G Sbjct: 332 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGV 368 >gi|317010176|gb|ADU80756.1| tRNA modification GTPase TrmE [Helicobacter pylori India7] Length = 450 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG N GKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNTGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D+ +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESADTIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ + + I++LNK D Sbjct: 313 LIDTLNRAKKPCIVVLNKND 332 >gi|298528797|ref|ZP_07016201.1| ribosome-associated GTPase EngA [Desulfonatronospira thiodismutans ASO3-1] gi|298512449|gb|EFI36351.1| ribosome-associated GTPase EngA [Desulfonatronospira thiodismutans ASO3-1] Length = 442 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 ++L+G N GKS+LVN +G + +V+ + TTR V I+ + + + VF+DT G+ Sbjct: 185 LSLLGRPNVGKSSLVNTLLGQERVLVSSRAGTTRDCVDVILEKGDKRYVFIDTAGVRRKT 244 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + + + + +D+ LV+D+ + LL + + L++++NK+D Sbjct: 245 TISDDLERFSALRAIRSCQRSDVALLVLDALSGMVAQDKKLLSFLEREKIPLVIVVNKVD 304 Query: 142 CV 143 + Sbjct: 305 QI 306 Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKSTL NR + ++V + TR + G V + +DT G+ + Sbjct: 12 VVIVGRPNVGKSTLFNRLLRQNKAMVHDRPGVTRDSLYGRVQGRTRDYTLVDTGGLVLEQ 71 Query: 85 DSYHKLMIRLSWSTIKH-ADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI-LILNKIDC 142 + + I H AD++ +VD + + + L + ++S R + L++NK+D Sbjct: 72 GAQLEEEIYEQVREAMHSADLILFMVDGSAGVTA-LDEQLAAMLRQSRRPVRLVVNKVDG 130 Query: 143 VKPERLLEQAEIANKLVFIEKTF---MVSATKGHGCDDVLNYLCSTLP 187 + L+E F F MVSA G+ + + S+LP Sbjct: 131 EERAALVEGD-------FYSLGFDMNMVSAAHGYNMPVLQEAIESSLP 171 >gi|292669286|ref|ZP_06602712.1| tRNA modification GTPase TrmE [Selenomonas noxia ATCC 43541] gi|292649127|gb|EFF67099.1| tRNA modification GTPase TrmE [Selenomonas noxia ATCC 43541] Length = 458 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 7/150 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N +G + +IVT TTR ++ + + + LDT G+ A+D+ Sbjct: 226 IVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVIEEEIIVEGIPLRLLDTAGLRAAEDA 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ +R + + A+++ V D+ L DLL + ++ ++++ NK D Sbjct: 286 VEQIGVRRTEEHLADAELILAVFDASAALTDEDRDLLARLQNTAADILVLCNKED---RS 342 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +L A+ A +SA +G G D Sbjct: 343 AVLTAADFA----LDAPVLTISAREGTGLD 368 >gi|89256498|ref|YP_513860.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. holarctica LVS] gi|156502609|ref|YP_001428674.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. holarctica FTNF002-00] gi|122500633|sp|Q2A342|MNME_FRATH RecName: Full=tRNA modification GTPase mnmE gi|166991110|sp|A7NCL5|MNME_FRATF RecName: Full=tRNA modification GTPase mnmE gi|89144329|emb|CAJ79616.1| tRNA modification GTPase trmE family protein [Francisella tularensis subsp. holarctica LVS] gi|156253212|gb|ABU61718.1| tRNA modification GTPase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 450 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-------AKRSSRLILILNK 139 I+ + I+ AD V V D + +V D +KEI + + + NK Sbjct: 279 IESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSD-IKEIIPEFYDQIPKDIDITYVHNK 337 Query: 140 IDCVK 144 ID +K Sbjct: 338 IDLLK 342 >gi|83945266|ref|ZP_00957615.1| GTP-binding protein EngA [Oceanicaulis alexandrii HTCC2633] gi|83851436|gb|EAP89292.1| GTP-binding protein EngA [Oceanicaulis alexandrii HTCC2633] Length = 459 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 10/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI--VRGIVSEKESQIVFLDTPGIF 81 +A+VG N GKSTL NR G ++IV + TR RG + + E ++V DT G Sbjct: 7 ALAIVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRIGDLELRLV--DTAGYE 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 + K M + + + AD+ ++D RE + + E+ ++S + +IL +NK Sbjct: 65 DDKAGIEARMRAQTEAALDEADVCVFLIDG-REGITAMDERFAEVLRKSHKPVILAVNKC 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + K E A A KL E VSA G G D+ L + A Sbjct: 124 EGAKGE---YGAMEAWKLGMGE-PVPVSAAHGEGMGDLYARLTDAIEAA 168 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL-DTPGI--- 80 +A+ G N GKSTL+N +G I + TR + + E + Q V L DT G+ Sbjct: 194 LAVAGRPNVGKSTLINALIGEDRLITGPEAGLTRDAI-AVEWEWDGQRVRLHDTAGLRKR 252 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D ++ + IK A+IV L+VD+ R + + + L++++ K Sbjct: 253 GKVDDRLERMSAADTLRAIKFAEIVLLLVDAERPFEKQDLTIADRVVTEGRGLVVLITKW 312 Query: 141 DCVK 144 D ++ Sbjct: 313 DLIE 316 >gi|325294541|ref|YP_004281055.1| GTP-binding protein engA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064989|gb|ADY72996.1| GTP-binding protein engA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 478 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 10/163 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKSTL+N VG + +IV+ TTR + + + +F+DT GI Sbjct: 223 VAIVGRPNMGKSTLLNALVGEERAIVSDIPGTTRDAIDTYAKIGDDEFIFIDTAGIRRRG 282 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKI 140 KD + +R + I AD+V L+VD+ E + + IA + +I+ +NKI Sbjct: 283 KIKDIEYYSYLR-ALDAIDRADVVVLLVDAE-EGPTDRDTKISGIALDKFKPIIIAVNKI 340 Query: 141 DCVKP----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 D ++ ERL + ++ + +SA + G ++++ Sbjct: 341 DKLQNQKEWERLHRELDLNFDFIPYAPRVFISAKEKKGLEELI 383 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 64/132 (48%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R +++VG N GKS+L NR + KV+I+ TR + + +++ +DT G+ Sbjct: 3 RLPVISIVGRPNVGKSSLFNRLLEKKVAIIDDTPGVTRDRIVQEADIDDHKVILVDTGGV 62 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + K + ++ ADI+ VVD + ++ K + K +I+ +NKI Sbjct: 63 DTSGEGFAKETTEQAKRAMEEADIIVFVVDGKEGITPLDEEVAKILRKWKKPIIVAVNKI 122 Query: 141 DCVKPERLLEQA 152 D E L+ A Sbjct: 123 DEPYMEDLIYDA 134 >gi|317453527|emb|CBL87873.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSALNL 168 >gi|122702507|emb|CAL88444.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|115314929|ref|YP_763652.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. holarctica OSU18] gi|122325057|sp|Q0BLL9|MNME_FRATO RecName: Full=tRNA modification GTPase mnmE gi|115129828|gb|ABI83015.1| GTP-binding protein [Francisella tularensis subsp. holarctica OSU18] Length = 450 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-------AKRSSRLILILNK 139 I+ + I+ AD V V D + +V D +KEI + + + NK Sbjct: 279 IESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSD-IKEIIPEFYDQIPKDIDITYVHNK 337 Query: 140 IDCVK 144 ID +K Sbjct: 338 IDLLK 342 >gi|116750025|ref|YP_846712.1| tRNA modification GTPase TrmE [Syntrophobacter fumaroxidans MPOB] gi|205829177|sp|A0LLH5|MNME_SYNFM RecName: Full=tRNA modification GTPase mnmE gi|116699089|gb|ABK18277.1| tRNA modification GTPase trmE [Syntrophobacter fumaroxidans MPOB] Length = 470 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G N GKS+L+N VG +IVT TTR +V + LDT G+ + Sbjct: 234 LVLAGKPNVGKSSLLNALVGRDRAIVTPFPGTTRDVVEDTFLLSGILVRVLDTAGLRHDP 293 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D I + +++ ADIV V+D R L +++ +A R +++LNK D Sbjct: 294 DEIESFGIARTIQSLEEADIVLCVMDRSRPLSAEDDAVVEAVASRP--FVIVLNKED 348 >gi|300023207|ref|YP_003755818.1| GTP-binding proten HflX [Hyphomicrobium denitrificans ATCC 51888] gi|299525028|gb|ADJ23497.1| GTP-binding proten HflX [Hyphomicrobium denitrificans ATCC 51888] Length = 467 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 33/242 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TNAGKSTL N+ GA V + T +R + +I+ DT G + Sbjct: 236 VAVVGYTNAGKSTLFNKITGAGVVAMDQVFATLDPTMREVKLPSARRIILSDTVGFISDL 295 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRS-------SRLILI 136 + R + + AD++ V D +H E + D+ K +++ + + Sbjct: 296 PTSLVAAFRATLEEVVEADLILHVRDIAHEETEAQARDVEKVLSELGIDTLPVDGHIQEV 355 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 NKID + +R +AE+ ++ E+ +VSA G G +L+ + S L + A Sbjct: 356 WNKIDLLTGDR---RAELQHEAQRNERPPVLVSAVTGEGIVPLLDAIDSRLSV------A 406 Query: 196 DQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQ 255 D+I D+ + L LH+ +C V + E +KDGSI +R I PS+ Sbjct: 407 DEILDVIIPGSLG-----ALLNWLHE-----TCDVLAR-EARKDGSIELRLRI----PSE 451 Query: 256 KK 257 KK Sbjct: 452 KK 453 >gi|187931774|ref|YP_001891759.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. mediasiatica FSC147] gi|208779948|ref|ZP_03247292.1| tRNA modification GTPase TrmE [Francisella novicida FTG] gi|254374693|ref|ZP_04990174.1| tRNA modification GTPase trmE family protein [Francisella novicida GA99-3548] gi|151572412|gb|EDN38066.1| tRNA modification GTPase trmE family protein [Francisella novicida GA99-3548] gi|187712683|gb|ACD30980.1| GTPase [Francisella tularensis subsp. mediasiatica FSC147] gi|208744403|gb|EDZ90703.1| tRNA modification GTPase TrmE [Francisella novicida FTG] gi|332678598|gb|AEE87727.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf. novicida Fx1] Length = 450 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-------AKRSSRLILILNK 139 I+ + I+ AD V V D + +V D +KEI + + + NK Sbjct: 279 IESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSD-IKEIIPEFYDQIPKDIDITYVHNK 337 Query: 140 IDCVK 144 ID +K Sbjct: 338 IDLLK 342 >gi|292806634|gb|ADE42447.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|283954515|ref|ZP_06372034.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 414] gi|283793919|gb|EFC32669.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 414] Length = 442 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 6/120 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIIGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ ++ + LS +++ ADI+ V D+ R E I LL+ I K ++ ILNK D Sbjct: 277 DTIEQIGVALSKKSLEDADIILAVFDASRKEDEEDKKIFKLLENIDK---KIFWILNKTD 333 >gi|197106988|ref|YP_002132365.1| thiophene and furan oxidation protein ThdF [Phenylobacterium zucineum HLK1] gi|254811489|sp|B4RD04|MNME_PHEZH RecName: Full=tRNA modification GTPase mnmE gi|196480408|gb|ACG79936.1| thiophene and furan oxidation protein ThdF [Phenylobacterium zucineum HLK1] Length = 445 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVGA NAGKSTL+N G + +IVT TTR ++ + +++ DT G+ + Sbjct: 216 IALVGAPNAGKSTLLNALAGREAAIVTATPGTTRDVIEVPMVLAGYKVLMADTAGLRDTA 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 D +R + + + AD+ +VD E DL EI + Sbjct: 276 DEIEAEGVRRARAWAEGADLRLWLVDGSSE---ETPDLPAEIGE 316 >gi|254369611|ref|ZP_04985622.1| hypothetical protein FTAG_01502 [Francisella tularensis subsp. holarctica FSC022] gi|157122565|gb|EDO66700.1| hypothetical protein FTAG_01502 [Francisella tularensis subsp. holarctica FSC022] Length = 450 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-------AKRSSRLILILNK 139 I+ + I+ AD V V D + +V D +KEI + + + NK Sbjct: 279 IESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSD-IKEIIPEFYDQIPKDIDITYVHNK 337 Query: 140 IDCVK 144 ID +K Sbjct: 338 IDLLK 342 >gi|134301618|ref|YP_001121586.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis WY96-3418] gi|166991112|sp|A4IX14|MNME_FRATW RecName: Full=tRNA modification GTPase mnmE gi|134049395|gb|ABO46466.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis WY96-3418] Length = 450 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-------AKRSSRLILILNK 139 I+ + I+ AD V V D + +V D +KEI + + + NK Sbjct: 279 IESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSD-IKEIIPEFYDQIPKDIDITYVHNK 337 Query: 140 IDCVK 144 ID +K Sbjct: 338 IDLLK 342 >gi|122701671|emb|CAL88225.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122700641|emb|CAL87909.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ T + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKTAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|114328959|ref|YP_746116.1| GTP-binding protein EngA [Granulibacter bethesdensis CGDNIH1] gi|114317133|gb|ABI63193.1| GTP-binding protein [Granulibacter bethesdensis CGDNIH1] Length = 483 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 4/145 (2%) Query: 4 GEITFFNEHKDFV-QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 GE + + ++ V Q + +A+VG NAGKSTL+NR +G I + TR + Sbjct: 197 GEAEAWEDEENIVEQGPPKPLKLAIVGRPNAGKSTLLNRLLGEDRVITGPEPGLTRDSIS 256 Query: 63 GIVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 +S+ +I +DT G+ +S K+ + S +K A+IV L VD+ L Sbjct: 257 VTLSDDIGEIELVDTAGLRRRARIDESLEKMSVSASIEALKMAEIVVLAVDATEGLHEQD 316 Query: 120 HDLLKEIAKRSSRLILILNKIDCVK 144 + + + + +L L K D V+ Sbjct: 317 LQIARLVEREGRGAVLALTKWDAVE 341 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 10/179 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+ G N GKSTL NR VG ++++V TR + + +DT G+ A Sbjct: 22 VAIAGRPNVGKSTLFNRLVGRRMALVADTPGVTRDRKEAEAMLRGRLVKLIDTAGLEEAP 81 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D+ M + S + + AD+V VVD+ + + +++ ++L+ NK + Sbjct: 82 QDTIAGRMRQSSETAVSQADLVVFVVDARSGITPADTHFASWLRRQNRPVLLVTNKAEAR 141 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 + + + VSA G G D++ + L AD+ SD+P Sbjct: 142 G----AGAEALEAYRLGLGDPLAVSAEHGLGIADLMREIADRL-----STDADRPSDMP 191 >gi|317178805|dbj|BAJ56593.1| GTP-binding protein EngA [Helicobacter pylori F30] Length = 461 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +S + G +++ + + L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAILNALNL 169 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTTDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|292806582|gb|ADE42421.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|289423092|ref|ZP_06424907.1| ribosome-associated GTPase EngA [Peptostreptococcus anaerobius 653-L] gi|289156423|gb|EFD05073.1| ribosome-associated GTPase EngA [Peptostreptococcus anaerobius 653-L] Length = 439 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N+ G K+SIV TR + G V +DT GI Sbjct: 6 IVAIVGRPNVGKSTLFNKLTGTKISIVEDTPGVTRDRIFGEVEWLNKYFTIIDTGGIEPE 65 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D +R + + A ++ VVD L ++ + K + ++L++NKID Sbjct: 66 SDDIIISQMRNQAMLAVDMAHVILFVVDGKGGLTAADREVADILRKTNKPVLLVVNKIDS 125 Query: 143 VKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E+ ++ F VS G D+L+ + P Sbjct: 126 KSQWDNVYDFYELG-----LDVPFAVSGANAIGLGDLLDEIVKNFP 166 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKS+++N +G + IV+ TTR + + +++ + +DT GI Sbjct: 180 VAITGKPNAGKSSILNNILGEERVIVSPIAGTTRDAIDTYFEQGDNKFLLIDTAGIRRRS 239 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDS 111 Y + +IR S S + AD+V +V+D+ Sbjct: 240 KVYENVERFSVIR-SMSAVDRADVVLIVIDA 269 >gi|122702719|emb|CAL88549.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122701393|emb|CAL88086.1| GTPase [Helicobacter pylori] gi|122702681|emb|CAL88530.1| GTPase [Helicobacter pylori] gi|242255958|gb|ACS88963.1| GTPase [Helicobacter pylori] gi|242255960|gb|ACS88964.1| GTPase [Helicobacter pylori] gi|292806426|gb|ADE42343.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122702247|emb|CAL88314.1| GTPase [Helicobacter pylori] gi|122702289|emb|CAL88335.1| GTPase [Helicobacter pylori] gi|122702401|emb|CAL88391.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122700879|emb|CAL88028.1| GTPase [Helicobacter pylori] gi|122701623|emb|CAL88201.1| GTPase [Helicobacter pylori] gi|122701677|emb|CAL88228.1| GTPase [Helicobacter pylori] gi|122702155|emb|CAL88268.1| GTPase [Helicobacter pylori] gi|122702241|emb|CAL88311.1| GTPase [Helicobacter pylori] gi|122702369|emb|CAL88375.1| GTPase [Helicobacter pylori] gi|122702397|emb|CAL88389.1| GTPase [Helicobacter pylori] gi|122702511|emb|CAL88446.1| GTPase [Helicobacter pylori] gi|317453543|emb|CBL87881.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|118497883|ref|YP_898933.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. novicida U112] gi|194323857|ref|ZP_03057633.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. novicida FTE] gi|166991111|sp|A0Q7G4|MNME_FRATN RecName: Full=tRNA modification GTPase mnmE gi|118423789|gb|ABK90179.1| GTPase of unknown function [Francisella novicida U112] gi|194322221|gb|EDX19703.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. novicida FTE] Length = 450 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-------AKRSSRLILILNK 139 I+ + I+ AD V V D + +V D +KEI + + + NK Sbjct: 279 IESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSD-IKEIIPEFYDQIPKDIDITYVHNK 337 Query: 140 IDCVK 144 ID +K Sbjct: 338 IDLLK 342 >gi|86606241|ref|YP_475004.1| GTP-binding protein [Synechococcus sp. JA-3-3Ab] gi|86554783|gb|ABC99741.1| GTP-binding protein [Synechococcus sp. JA-3-3Ab] Length = 588 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 75/188 (39%), Gaps = 11/188 (5%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + S+ VALVG TNAGKSTL+N A+V + T R + + ++ DT Sbjct: 406 EGSQIPVVALVGYTNAGKSTLLNALTQAQVYVADQLFATLDPTTRRLELPGQQAVLLTDT 465 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSSRL 133 G + + + AD + VVD SH + +I LL E+ + Sbjct: 466 VGFLTELPEQLVEAFQATLEEVTEADALLHVVDLSHPNWEGHIEAVETLLDEMPLATGPR 525 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS-TLPLAPWV 192 L+ NKID + PE + + + K VSA G D + + L AP Sbjct: 526 QLVFNKIDRLDPE------WVEDVRLLYPKALFVSAANGQNLDQLRHTLAQFAAAFAPRP 579 Query: 193 YSADQISD 200 Q D Sbjct: 580 CGGRQFGD 587 >gi|39997323|ref|NP_953274.1| GTP-binding protein EngA [Geobacter sulfurreducens PCA] gi|81832003|sp|Q74AX4|DER_GEOSL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|39984214|gb|AAR35601.1| GTP-binding protein Era, putative [Geobacter sulfurreducens PCA] gi|298506260|gb|ADI84983.1| GTPase EngA [Geobacter sulfurreducens KN400] Length = 438 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 17/170 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL NR VG + +IV TR V+ + + +DT G + Sbjct: 6 VAIVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFDVPFILIDTGGFEPES 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILNKI 140 D + M S ++ AD++ ++D L V + ++L+ + K + ++NK+ Sbjct: 66 SDRLLQQMREQSRLAMEEADVILFLMDGRAGLNPADVEVVEMLRRVDK---PVFFVVNKV 122 Query: 141 DCVKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLP 187 D E E+A + ++ +SA G D+++ + + LP Sbjct: 123 DG-------ETLEVAASEFYSLGVDNLLTISAEHNRGVRDLMDEVVAALP 165 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 10/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+LVNR +G + + TTR V + + + + +DT GI Sbjct: 179 IAVVGRPNVGKSSLVNRLLGYERVVANPTPGTTRDSVDTWFTCNKKRYLLIDTAGIRRKG 238 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+ + S +I+ AD+V +V+++ + + + I ++NK D Sbjct: 239 KTTQKIEKYSVVDSLRSIERADVVLIVLNAEEGVTEQDERIAGYAFEAGKACIFVVNKWD 298 Query: 142 CVKPE-----RLLEQAEIANK-LVFIEKTFMVSATKGHGCDDVL 179 ++ + R +++ K L F+ F VSA G + ++ Sbjct: 299 AIEKDNSSVGRFVDKIRTEFKYLAFVPIVF-VSAKTGQRLNRIM 341 >gi|42525230|ref|NP_970610.1| tRNA modification GTPase TrmE [Bdellovibrio bacteriovorus HD100] gi|81829094|sp|Q6MGL5|MNME_BDEBA RecName: Full=tRNA modification GTPase mnmE gi|39577441|emb|CAE81264.1| probable tRNA modification GTPase trmE [Bdellovibrio bacteriovorus HD100] Length = 479 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 15/158 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 + L G N GKS+L+N F+ + +IVT TTR ++ G + + + F+DT G+ + A Sbjct: 229 IVLTGLPNVGKSSLLNLFLEDERAIVTDIPGTTRDVIHGDTTFEGVKFTFVDTAGLRDEA 288 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D ++ I+ S+ +D+V V D + L +L+ + ++ ++ NK D + Sbjct: 289 TDLVERIGIQKSYEAQNESDVVFFVYDIEKGLGAEELQILESL--DPAKTYILANKTDKI 346 Query: 144 ---KP----ERLLEQAEIANKLV-----FIEKTFMVSA 169 KP E+ L+ ++ KL F + F VSA Sbjct: 347 GGSKPLETVEKTLKNSKFFQKLADPAAFFTRRVFFVSA 384 >gi|296242987|ref|YP_003650474.1| small GTP-binding protein [Thermosphaera aggregans DSM 11486] gi|296095571|gb|ADG91522.1| small GTP-binding protein [Thermosphaera aggregans DSM 11486] Length = 335 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 11/170 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG-IVSEKESQIVFLDTPGIFNA 83 V + G AGKSTL++R AK I + TT++I+ G + E +IV +DTPGI + Sbjct: 162 VIIAGMPQAGKSTLISRLTNAKPEIGFYPF-TTKNIIAGHLTVEPYGRIVLIDTPGILDR 220 Query: 84 KDSYHKLMIRLSWSTIKH-ADIVCLVVDSHR------ELKVNIHDLLKEIAKRSSRLILI 136 S + + +KH AD + ++D + +++++ ++ + + L+++ Sbjct: 221 PMSERNPIEHRAVLAVKHLADALLFLIDPSPGKYYSLDEQLSVYRTVQSMLQ-GKPLMIV 279 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 LNK D P L E EI + +E ++SA G D + L L Sbjct: 280 LNKADATPPGELEEAREIVLRKTGVE-PLVISALTGLNLDILKQRLAGLL 328 >gi|242255894|gb|ACS88931.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + EQ+ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEK---EQS-YAFSSFGMPKSFNISVSHNRGISALIDAILNALDL 168 >gi|198274289|ref|ZP_03206821.1| hypothetical protein BACPLE_00431 [Bacteroides plebeius DSM 17135] gi|198272779|gb|EDY97048.1| hypothetical protein BACPLE_00431 [Bacteroides plebeius DSM 17135] Length = 441 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR ++ +IV + TTR G + +DT G + Sbjct: 6 GNLVAIVGRPNVGKSTLFNRLTKSRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 65 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL---LKEIAKRS-SRLILI 136 N+ D + + + + I AD++ VVD + DL + EI +RS + ++L+ Sbjct: 66 VNSDDVFEEEIRKQVMLAIDEADVILFVVDVMN----GVTDLDMEVAEILRRSKTPVLLV 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 NK D + AE + + + + VSA G G D+L+ + S Sbjct: 122 ANKTD--NNDLQYNAAEFYS--LGLGDPYCVSALSGSGTGDLLDLVLS 165 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 41/204 (20%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN--- 82 A+VG NAGKS+++N F+G +IVT TTR + ++ +DT GI Sbjct: 183 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 242 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++D + +IR S +I+++D+ L++D+ R ++ ++ + + L++++NK D Sbjct: 243 VSEDLEYYSVIR-SIRSIENSDVCILMLDATRGIEGQDLNIFSLVQRNQKGLVVVVNKWD 301 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 ++ +KT V KG+ D + N LAP+ +D Sbjct: 302 LIE-----------------DKT--VKVMKGY-EDAIRNR------LAPF-------TDF 328 Query: 202 PMFHFTAEITREKLF--LHLHKEI 223 P+ FT+ +T++++ L L KE+ Sbjct: 329 PIV-FTSALTKQRILKVLELAKEV 351 >gi|122702787|emb|CAL88583.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K + I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KGALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + + L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNLNP 170 >gi|239928532|ref|ZP_04685485.1| ATP/GTP-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291436858|ref|ZP_06576248.1| ATP/GTP-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291339753|gb|EFE66709.1| ATP/GTP-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 601 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 12/191 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + ++ VA+ G TNAGKS+L+NR GA V + T V Sbjct: 254 EIAEMKTGREVKRQERKRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 313 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 314 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPNPEEQLA 373 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++++ I+++NK D P L +L+ +EK + VSA G + Sbjct: 374 AVREVIRDVGATDVPEIVVINKADAADPLTL-------QRLLRVEKRSLAVSARTGQNIE 426 Query: 177 DVLNYLCSTLP 187 +L ++ + LP Sbjct: 427 QLLAFIDAELP 437 >gi|219684548|ref|ZP_03539491.1| tRNA modification GTPase TrmE [Borrelia garinii PBr] gi|219671910|gb|EED28964.1| tRNA modification GTPase TrmE [Borrelia garinii PBr] Length = 464 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 + L G+ NAGKS+L N F+ SIV+ TTR + S + I+F DT G+ + Sbjct: 225 LVLAGSVNAGKSSLFNMFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLRD 282 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A + +L I S S IK A +V V+D L L + K +S+++ +LNKID Sbjct: 283 ADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTREDF-LFIDSNKSNSKILFVLNKID 340 >gi|153838555|ref|ZP_01991222.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] gi|149748070|gb|EDM58929.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] Length = 498 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 12/170 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL NR + ++V TR G ++E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGGIDG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ M S + I AD+V +VD L + + K +L++NKID Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPADEAIAAHLRKIEKPAMLVVNKIDG 123 Query: 143 VKPERLLEQAEIANK-LVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + + A A+ + ++ + ++A G G +L LAP+ Sbjct: 124 IDAD-----AACADFWQLGVDDMYQIAAAHGRGVTALLER-----ALAPF 163 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 212 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRRG 271 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 272 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 331 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + + E+ +L F++ + +SA G G Sbjct: 332 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGV 368 >gi|122702439|emb|CAL88410.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKTLNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122700667|emb|CAL87922.1| GTPase [Helicobacter pylori] gi|122700867|emb|CAL88022.1| GTPase [Helicobacter pylori] gi|122701573|emb|CAL88176.1| GTPase [Helicobacter pylori] gi|122702389|emb|CAL88385.1| GTPase [Helicobacter pylori] gi|122702437|emb|CAL88409.1| GTPase [Helicobacter pylori] gi|122702443|emb|CAL88412.1| GTPase [Helicobacter pylori] gi|122702465|emb|CAL88423.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|18075559|emb|CAD11175.1| GTP-binding protein [Helicobacter pylori] gi|122702347|emb|CAL88364.1| GTPase [Helicobacter pylori] gi|122702819|emb|CAL88599.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|332703981|ref|ZP_08424069.1| GTP-binding protein engA [Desulfovibrio africanus str. Walvis Bay] gi|332554130|gb|EGJ51174.1| GTP-binding protein engA [Desulfovibrio africanus str. Walvis Bay] Length = 443 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A +G NAGKS+LVN G+ IV+ TTR V + + F+DT G+ Sbjct: 182 IAFLGKPNAGKSSLVNSLTGSDRVIVSPVAGTTRDSVDVTFEVEGKRYTFVDTAGVRKRT 241 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D+ + + + K A I LV+D+ + LL + K + I ++NK+D Sbjct: 242 KIEDNLEQFSVLRALKASKKAQITVLVLDAQAGMTTQDKKLLSFLEKEKTPFIAVINKMD 301 Query: 142 CV 143 V Sbjct: 302 LV 303 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 10/171 (5%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTL NR + + +I + TR + ++ F+DT G+ Sbjct: 3 ATVAIIGRPNVGKSTLFNRLLRREAAITHDRPGVTRDRIYAETDLGGRKVAFVDTGGLEM 62 Query: 83 AK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + + +K + + LV+D L + I + ++L +NKI Sbjct: 63 EEQVEDIQAAIFAQAREAVKESHGILLVMDGREGLTALDERVAAFIRTSNKPVLLAVNKI 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC----DDVLNYLCSTLP 187 D + L+ AE + L F VSA+ GHG + + ++L + +P Sbjct: 123 DGSENADLM-LAEF-HGLGF--PLLAVSASHGHGITTLREQIADFLLADVP 169 >gi|325293656|ref|YP_004279520.1| GTP-binding protein engA [Agrobacterium sp. H13-3] gi|325061509|gb|ADY65200.1| GTP-binding protein engA [Agrobacterium sp. H13-3] Length = 476 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 22/185 (11%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V D ++ VA++G NAGKSTL+NRF+G + + TR + + I Sbjct: 198 VYDETKPLRVAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMF 257 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ + KL + S +I+ A+ V +V DS + L+ + + Sbjct: 258 DTAGMRRKARVTEKLEKLSVADSLRSIRFAETVVIVFDSTIPFEKQDLQLVDLVIREGRA 317 Query: 133 LILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +L NK D V K ERLL QA + +S G+G D ++ Sbjct: 318 AVLAFNKWDLVEDPQAFLADLREKTERLLPQARGI-------RAVPMSGQTGYGLDRLMQ 370 Query: 181 YLCST 185 + T Sbjct: 371 NIIDT 375 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 S VA+VG N GKSTL NR VG K+++V TR G + + +DT G+ Sbjct: 2 SFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLRFTIIDTAGLE 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + ++ M + + I AD+ VVD+ L L + + +R ++L+ NK Sbjct: 62 QSGPETLQGRMWAQTEAAIDEADVTLFVVDAKAGLTPADETLAEMLRRRGKPVVLVANK 120 >gi|122702657|emb|CAL88518.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSVLNL 168 >gi|122701613|emb|CAL88196.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + +TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNTLNL 168 >gi|122701617|emb|CAL88198.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVDS L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDSKSIPSDEDIKLFREVFKTNPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + + K+F +S + G +++ + + L L Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|317452853|emb|CBL87862.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NK+D K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKVDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|288802559|ref|ZP_06407998.1| tRNA modification GTPase TrmE [Prevotella melaninogenica D18] gi|288335087|gb|EFC73523.1| tRNA modification GTPase TrmE [Prevotella melaninogenica D18] Length = 462 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 9/128 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+N + + +IV+ TTR ++ K F+DT GI + Sbjct: 232 VAIVGKTNVGKSTLLNCLLHEEKAIVSDIHGTTRDVIEDTTEIKGVTFRFIDTAGIRHTD 291 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKID- 141 D KL I ++ + A IV V+D E + L + LI I NKID Sbjct: 292 DQIEKLGIERAYQKMDEAAIVLWVIDEQPTAEECTEMQRL-----TQGKHLITIFNKIDS 346 Query: 142 -CVKPERL 148 V+P+++ Sbjct: 347 KAVEPKQV 354 >gi|167569736|ref|ZP_02362610.1| GTP-binding protein EngA [Burkholderia oklahomensis C6786] Length = 445 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D + G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGQPEESEEDAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKRYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++A KL F++ K+ +SA + G Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVRERAKADLARKLKFLDFAKSHFISAAEKTGIGP 340 Query: 175 ----CDDVLNYLCSTLP 187 DD LP Sbjct: 341 LMRSVDDAYAAAMKKLP 357 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A+ + + +SA G G D++N Sbjct: 124 MK------YTAVASDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|110679965|ref|YP_682972.1| GTP-binding protein HflX, putative [Roseobacter denitrificans OCh 114] gi|109456081|gb|ABG32286.1| GTP-binding protein HflX, putative [Roseobacter denitrificans OCh 114] Length = 432 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 14/170 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA V T +R + +++ DT G + Sbjct: 214 IALVGYTNAGKSTLFNHLTGADVMAKDMLFATLDPTMRRLRLPDGPEVILSDTVGFISDL 273 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKV---NIHDLLKEIAKRSSRLILIL-NK 139 + R + + AD++C V D SH E + ++ D++ + R L NK Sbjct: 274 PTELVAAFRATLEEVLAADVICHVRDISHPETEAQAKDVQDIMTTLGVEEDRPTFELWNK 333 Query: 140 IDCVKPERLLEQAEIANKLVFIEK---TFMVSATKGHGCDDVLNYLCSTL 186 +D LL + E ++ F +SA G G D +L + TL Sbjct: 334 LD------LLSEGEADAMRARADRDPSVFAISALSGEGLDGLLAAVTQTL 377 >gi|16330798|ref|NP_441526.1| GTP-binding protein EngA [Synechocystis sp. PCC 6803] gi|8928101|sp|P74120|DER_SYNY3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1653291|dbj|BAA18206.1| slr1974 [Synechocystis sp. PCC 6803] Length = 452 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 7/168 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKST VNR G + +IV + TR ++ +DT G+ Sbjct: 6 VAIIGRPNVGKSTFVNRLAGNQQAIVHDQPGITRDRTYRPAFWRDRDFQVVDTGGLVFND 65 Query: 85 DSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 DS IR + + A VVD + + ++ + + ++S +IL +NK C Sbjct: 66 DSEFLPEIREQANLALAEAKAAIFVVDGQQGPTASDEEIAQWLRQQSVPVILAVNK--CE 123 Query: 144 KPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P++ ++ AE + + + + + +SA G G D+L+ L LP AP Sbjct: 124 SPDQGAIQAAEFWH--LGLGEPYPMSAIHGSGTGDLLDALLEYLP-AP 168 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N G + +IV+ TTR + +V + +DT GI K Sbjct: 179 VAIVGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDMVVERNGQKYRLIDTAGIRRKK 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I ++ I+ AD+V V+D + L I + ++L++NK D Sbjct: 239 NVDYGAEFFGINRAFKAIRRADVVLFVLDVLDGVTEQDLKLAGRIIEDGRAVVLVINKWD 298 Query: 142 CVKPERLL---EQAEIANKLVFIEKTFM--VSATKGHGCDDVLN 180 V+ + + ++ +L F++ M VSA G +L+ Sbjct: 299 AVEKDSYTIYEHREQLMARLYFMDWAEMIFVSAQTGLRVQKILD 342 >gi|325915706|ref|ZP_08178011.1| tRNA modification GTPase trmE [Xanthomonas vesicatoria ATCC 35937] gi|325538123|gb|EGD09814.1| tRNA modification GTPase trmE [Xanthomonas vesicatoria ATCC 35937] Length = 428 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 17/172 (9%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 202 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAILLDGFELTLVDTAGLRDGGDA 261 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + +R + + ++ AD+ +V+D+ + + I D + + R + I NK D Sbjct: 262 IEREGMRRARAELQRADLALVVLDARDPQAAREAIGDAIDAV----PRQLWIHNKCD--- 314 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LL+ N + VSAT G G + L+ L L+ + S D Sbjct: 315 ---LLDN----NTPLLDANAVAVSATTGQGLEQ-LHTRLRELALSDGIESVD 358 >gi|254560700|ref|YP_003067795.1| tRNA modification GTPase trmE [Methylobacterium extorquens DM4] gi|254267978|emb|CAX23846.1| tRNA modification GTPase trmE [Methylobacterium extorquens DM4] Length = 444 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 21/159 (13%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CV L GA NAGKSTL+N G +IV+ TTR + +V +DT G+ Sbjct: 226 CVVLAGAPNAGKSTLLNALSGRDAAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRET 285 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D+ ++ + S I+ AD+V +V + + +L +I+ ++L+ K D + Sbjct: 286 ADAIEAEGVKRTQSRIRSADLVLHLVPAGGKADA---ELFTDIS-----ILLVRTKTD-L 336 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 PE V E +SA G G D +L+ + Sbjct: 337 APE------------VPGEGGLAISAVTGAGLDALLDAI 363 >gi|269962406|ref|ZP_06176756.1| GTP-binding protein [Vibrio harveyi 1DA3] gi|269832902|gb|EEZ87011.1| GTP-binding protein [Vibrio harveyi 1DA3] Length = 498 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ M + S + I AD+V +VD L + + + K +L++NKID Sbjct: 64 TEEGVETKMAQQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVNKIDG 123 Query: 143 VKPE 146 + + Sbjct: 124 IDAD 127 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 212 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRG 271 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 272 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 331 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + + E+ +L F++ + +SA G G Sbjct: 332 GLDNDVKENVKKELDRRLGFVDFARIHFISALHGTGV 368 >gi|239932165|ref|ZP_04689118.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672] gi|291440533|ref|ZP_06579923.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672] gi|291343428|gb|EFE70384.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672] Length = 496 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 60 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 119 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ +++ + K ++L NK+D Sbjct: 120 VLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDG- 178 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P + A + + + + + + VSA G G D+L+ + LP AP Sbjct: 179 -PSGEADAAYLWS--LGLGEPYPVSALHGRGTGDMLDQVLEVLPDAP 222 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VAL+G N GKS+L+N+ G + +V TTR V ++ F+DT GI Sbjct: 236 VALIGRPNVGKSSLLNKVAGEERVVVNELAGTTRDPVDEMIELGGKTWKFVDTAGIRKRV 295 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++D+ + V ++ + L+L N Sbjct: 296 HLQQGADYYASLR---TAAAVEKAEVAVVLIDAAESISVQDQRIVTMAVEAGRALVLAFN 352 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 353 KWDTLDEER 361 >gi|167747191|ref|ZP_02419318.1| hypothetical protein ANACAC_01905 [Anaerostipes caccae DSM 14662] gi|317473608|ref|ZP_07932897.1| ribosome-associated GTPase EngA [Anaerostipes sp. 3_2_56FAA] gi|167654151|gb|EDR98280.1| hypothetical protein ANACAC_01905 [Anaerostipes caccae DSM 14662] gi|316898898|gb|EFV20923.1| ribosome-associated GTPase EngA [Anaerostipes sp. 3_2_56FAA] Length = 440 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G NAGKS+++N+ +G + IV+ TTR + ++ + + VF+DT G+ Sbjct: 180 IAIIGKPNAGKSSIINKMLGEERVIVSDVAGTTRDAIDTVIQKNGKEYVFIDTAGLRRKN 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + S ++ D+ LV+D+ + + +R +I+ +NK D Sbjct: 240 KIKEDLERYSVIRTVSAVERCDVAVLVIDATEGITEQDAKIAGIAHERGKGMIIAVNKWD 299 Query: 142 CVK 144 V+ Sbjct: 300 LVE 302 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 7/121 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N G +SIV TR + +S +DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGENISIVKDTPGVTRDRIYADISWLNYNFTLIDTGGI--EP 63 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 DS ++ R+ + I+ AD++ +VD + L V+ + ++ +RS + ++L +NK Sbjct: 64 DSGDVILSRMREQAQIAIETADVIIFLVDVRQGL-VDADFQVADMLRRSQKPVVLAVNKA 122 Query: 141 D 141 D Sbjct: 123 D 123 >gi|122702767|emb|CAL88573.1| GTPase [Helicobacter pylori] gi|122702769|emb|CAL88574.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122702523|emb|CAL88451.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|91788466|ref|YP_549418.1| GTP-binding protein EngA [Polaromonas sp. JS666] gi|123355649|sp|Q12AC2|DER_POLSJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91697691|gb|ABE44520.1| Small GTP-binding protein domain [Polaromonas sp. JS666] Length = 447 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 7/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKST+ NR + +IV TR G + + +DT G + Sbjct: 4 VIALVGRPNVGKSTIFNRLTKTRDAIVADFAGLTRDRHYGNGKLGSHEYIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A +K M + + + AD+V VVD+ + HD+ + K +L NK Sbjct: 64 AASGIYKEMAKQTRQAVAEADVVIFVVDARAGISAQDHDIANFLRKLGKPTVLTANKA-- 121 Query: 143 VKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E + E + + + + + VSA+ G G +++ + L LA Sbjct: 122 ---EGMTEGVQFSEFFELGLGEVLPVSASHGQGMRSLVDLALAPLHLA 166 Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 6/160 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTL+N ++G + + TTR + + +DT G+ Sbjct: 182 LAVAGRPNVGKSTLINTWLGEERLVSFDLPGTTRDAISVPFERAGQKFELIDTAGLRRKG 241 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L++D+ + + + I + ++L +NK D Sbjct: 242 KVFEAIEKFSVVKTLQAIEGANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAINKWD 301 Query: 142 CVKP-ERLLEQAEIANKLVFIEKTFM--VSATKGHGCDDV 178 V +R + I +L F++ + +SA K G V Sbjct: 302 AVDAYQRETLERSIETRLAFLKFASIHKISAIKRQGLAPV 341 >gi|332185040|ref|ZP_08386789.1| ribosome-associated GTPase EngA [Sphingomonas sp. S17] gi|332014764|gb|EGI56820.1| ribosome-associated GTPase EngA [Sphingomonas sp. S17] Length = 456 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 13/165 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V + TR G +DT G + Sbjct: 6 IVAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDAHLLGLDFRVIDTAGYEDE 65 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILN 138 D+ M R + + + AD+ +VD+ + I L +EIA+ RSS ++L N Sbjct: 66 DPDTLPGRMRRQTEAAVGEADVALFLVDA----RAGIMPLDEEIARWLRSSDTPIVLAAN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 K + R EQ + + +SA G G D+ L Sbjct: 122 KAEG----RAAEQGILEALALGFGDPVQLSAEHGEGVGDLFEALL 162 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV------RGIVSEKESQIVFLDTP 78 +A+VG NAGKSTL+NRF+G I + TR + R E Q+ +DT Sbjct: 186 LAIVGRPNAGKSTLINRFLGQDRLITGPEAGITRDSIAIDWEWRDRDGEVR-QVRLIDTA 244 Query: 79 GI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 G+ +D KL + + + A++V L++D+ L+ + + + L++ Sbjct: 245 GMRKKAKVQDKLEKLSVADALRAVDFAEVVVLLLDATLGLESQDLRIADRVLEEGRALLI 304 Query: 136 ILNKIDCVK-PERLLEQAEIA--NKLVFIEKT--FMVSATKGHGCDDVLNYLCST 185 LNK D + P L + A + L ++ VSA G G D ++ T Sbjct: 305 ALNKWDVAENPSSLFNGVKKALEDGLSQVKGVPLLAVSAATGKGLDTLIEAAFET 359 >gi|327482910|gb|AEA86220.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri DSM 4166] Length = 455 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + + Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTE 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE---IAKRSSRLILILNKID 141 D ++ ++ + S I AD + LVVD+ + L E + ++ LI NK D Sbjct: 279 DQVERIGVQRALSAIGEADRILLVVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKAD 338 >gi|290953967|ref|ZP_06558588.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. holarctica URFT1] gi|295312644|ref|ZP_06803394.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. holarctica URFT1] Length = 379 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-------AKRSSRLILILNK 139 I+ + I+ AD V V D + +V D +KEI + + + NK Sbjct: 279 IESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSD-IKEIIPEFYDQIPKDIDITYVHNK 337 Query: 140 IDCVK 144 ID +K Sbjct: 338 IDLLK 342 >gi|188579254|ref|YP_001916183.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae PXO99A] gi|226704788|sp|B2SUV8|MNME_XANOP RecName: Full=tRNA modification GTPase mnmE gi|188523706|gb|ACD61651.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae PXO99A] Length = 446 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 18/172 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + +R + + ++ AD+ +V+D+ + + I D + + R + I NK D + Sbjct: 281 IEREGMRRARAELERADLALVVLDARDPQAARAAIGDAIDAV----PRQLWIHNKCDLLS 336 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 L+ IA VSA G G + L+ L L V S D Sbjct: 337 DAAPLDVNAIA-----------VSAVTGQGLEQ-LHIRLRELALGDGVESVD 376 >gi|325922757|ref|ZP_08184491.1| tRNA modification GTPase trmE [Xanthomonas gardneri ATCC 19865] gi|325546753|gb|EGD17873.1| tRNA modification GTPase trmE [Xanthomonas gardneri ATCC 19865] Length = 446 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 14/170 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G++ +IVT TTR ++ + ++ +DT G+ + D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSERAIVTDVAGTTRDTLQETIQLDGFELTLVDTAGLRDGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + +R + + ++ AD+ +V+D+ R+ + D + + R + I NK D Sbjct: 281 IEREGMRRARAELQRADLALIVLDA-RDPQA-ARDAIGDAIDVVPRQLWIHNKCDL---- 334 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + + L VSA G G + L+ L L V S D Sbjct: 335 -------LVDALKLDSDAIAVSAVTGQGLEQ-LHIRLRELALGDGVESVD 376 >gi|319899216|ref|YP_004159309.1| GTP-binding protein [Bartonella clarridgeiae 73] gi|319403180|emb|CBI76739.1| GTP-binding protein [Bartonella clarridgeiae 73] Length = 478 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 21/172 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V ++ TR R I S K + F +DT G+ Sbjct: 4 TIAIVGRPNVGKSTLFNRLVGQKLALVDNQPGVTRD--RRIHSAKLQDLHFDVIDTAGLE 61 Query: 82 NAKDSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 A + H L R+ T I AD++ V+D+ + + D I K ++L+ N Sbjct: 62 EADN--HTLEGRMRSQTKIAIDEADLILFVLDAKSGITSSDLDFASLIRKSGKPIVLVSN 119 Query: 139 KIDCVKPERLLEQAEIANKL----VFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K + +A IA + + + K +SA G G D+ + + + Sbjct: 120 KSES--------KAAIAGEYDAWSLRLGKPCSISAEHGQGLSDLRDAILDAI 163 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 7/138 (5%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 +D V D ++ +A+VG N GKSTL+N +G + + TR + + Sbjct: 197 EEDPVYDEKKTIRIAIVGRPNTGKSTLINSMLGQNRLLTGPEAGITRDSISVDWEWNNRR 256 Query: 72 IVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIA 127 I DT G+ ++ KL + S I+ A++V +V D+ + DL + ++ Sbjct: 257 IKLFDTAGLRRKSKVQEKLEKLSVIDSLRAIRFAEVVVIVFDATASFEK--QDLQISDLV 314 Query: 128 KRSSRL-ILILNKIDCVK 144 R R+ I+ NK D ++ Sbjct: 315 IREGRVPIIAFNKWDLIE 332 >gi|296136228|ref|YP_003643470.1| ribosome-associated GTPase EngA [Thiomonas intermedia K12] gi|295796350|gb|ADG31140.1| ribosome-associated GTPase EngA [Thiomonas intermedia K12] Length = 457 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 7/168 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+LVG N GKSTL NR ++ +IV TR G++ + ++ +DT G Sbjct: 5 VSLVGRPNVGKSTLFNRMTRSRDAIVADMPGLTRDRHYGMLRMADRPVIVVDTGGFEPVV 64 Query: 85 DS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ H+ M R + I +D+V +VD L + E+ K ++L +NK + Sbjct: 65 DTGIVHQ-MARQTRQAIAESDLVVFLVDLRTGLSPQDLHIAAELRKTGKPILLAVNKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L AE + + + F +SA G D+L+ + LP P Sbjct: 124 RHGHAAL--AEFHE--LGLGEPFSISAAHGDSVPDLLDRILQALPSEP 167 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 10/169 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTLVN VG + I TTR + + + +DT G+ Sbjct: 194 LAIAGRPNVGKSTLVNALVGEERVIAFDMPGTTRDAIEVPFERDGRKFILIDTAGLRRKG 253 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L++D+ + + + L+L NK D Sbjct: 254 KVFEAVEKFSVIKTLQAIEQANVVVLLLDATEGVSDQDAHIASFAVEAGRALVLAANKWD 313 Query: 142 CVKP---ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 V ERL+ I +L F+ K +SA G G + ++ + + Sbjct: 314 AVDTYGRERLM--VAIRQRLPFVSFAKFHSISARTGSGLNGLMKSVIAA 360 >gi|256847158|ref|ZP_05552604.1| ribosome-associated GTPase EngA [Lactobacillus coleohominis 101-4-CHN] gi|256715822|gb|EEU30797.1| ribosome-associated GTPase EngA [Lactobacillus coleohominis 101-4-CHN] Length = 437 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 12/168 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 6 IVAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYTHAEWLGKNFNLIDTGGIDMS 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + I AD++ LVVD ++ I D +++A+ RS++ ++L +NK Sbjct: 66 DQPLTTQIREQAEVAIDEADVIVLVVD----VQNGITDADEKVAQLLYRSNKPVVLAVNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D PER + + + + + + + VS+ G G D+L+ + P Sbjct: 122 VD--NPERRSDIYDFYS--LGLGEPYPVSSVHGIGLGDLLDAVIKNFP 165 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%) Query: 18 DNSRSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 DN + + +L+G N GKS+LVN +G + IV+ TTR + + + Sbjct: 169 DNQKDDSIRFSLIGRPNVGKSSLVNAILGQQRVIVSDIAGTTRDAINTQFVADHRKFTMV 228 Query: 76 DTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----K 128 DT GI Y + + S I +D+V +V+++ I DL K IA + Sbjct: 229 DTAGIKKKGKLYENTERYALMRSMKAIDDSDVVLVVLNADE----GIRDLDKHIAGYAHE 284 Query: 129 RSSRLILILNKIDCVK 144 +I+++NK D +K Sbjct: 285 AGKGVIIVVNKWDLIK 300 >gi|258517429|ref|YP_003193651.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM 771] gi|257781134|gb|ACV65028.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM 771] Length = 461 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 6/157 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G N GKS+L+N + K +IVT TTR + ++ K + DT G Sbjct: 220 REGLAVVIAGKPNVGKSSLLNALLKEKRAIVTEIPGTTRDAIEEYINIKGIPVKITDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + D+ K+ +++S I ADI+ ++D +L E+ R+ LI+I+NK Sbjct: 280 LRETGDTVEKIGVQISKEKIMGADIILYMLDVKNGFTDVDCYVLDEVINRN--LIVIINK 337 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 ID ++ I+NK +E +SA K G D Sbjct: 338 IDVGSGIEIINN--ISNKYENLE-IVQISALKDIGLD 371 >gi|223041036|ref|ZP_03611294.1| ribosome-associated GTPase EngA [Campylobacter rectus RM3267] gi|222877708|gb|EEF12831.1| ribosome-associated GTPase EngA [Campylobacter rectus RM3267] Length = 467 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 17/170 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + LVG N GKS+L NR G +++I + TTR + I+ + V +D+ G+ ++ Sbjct: 4 IILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDKSCVLIDSGGLDDSS 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + + + + +D + +VD L + K + L++NKID K Sbjct: 64 ELFKNVKAK-TLAEARSSDAIIFMVDGKMMPSDEDKALYYALLKLNLPTALVINKIDSKK 122 Query: 145 PERLLEQAEIANKLVFIEKT-FMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 E L E N F KT F +S + G D+ LA W+Y Sbjct: 123 DE--LRSYEFVN---FGAKTSFAISVSHNAGIDE----------LADWIY 157 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 2/152 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N V ++V+ TT V ++ F+DT GI Sbjct: 202 VGIIGRVNVGKSSLLNALVKESRAVVSDVAGTTIDPVNETFVYEDRIFEFVDTAGIRKRG 261 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + S ++ ADI LV+DS L + AK +I++LNK D Sbjct: 262 KIEGIERYALNRTESALELADIALLVLDSSEPLTELDERIAGLAAKFELGVIIVLNKWDK 321 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + + EI +K F+ ++S + G Sbjct: 322 SEEDFDKFSREIRDKFKFLAYAPIISVSALGG 353 >gi|205422380|sp|Q39ZT0|MNME_PELCD RecName: Full=tRNA modification GTPase mnmE Length = 456 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G N GKS+L+N +G +IVT TTR + + + +DT GI N Sbjct: 223 VLIFGKPNVGKSSLMNGLLGEARAIVTDIPGTTRDTIEEDLVLGGLPLRIVDTAGIRNTL 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + +R + S ++ AD+V LV+D +E+ + DLL R+ +++++NK D Sbjct: 283 DPVEEEGVRRARSKVESADLVLLVIDGSQEMGED--DLLALEFCRNREVLVVINKCD 337 >gi|18075601|emb|CAD11196.1| GTP-binding protein [Helicobacter pylori] gi|122700745|emb|CAL87961.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILDTLDL 168 >gi|242399634|ref|YP_002995059.1| GTP-binding protein [Thermococcus sibiricus MM 739] gi|242266028|gb|ACS90710.1| GTP-binding protein [Thermococcus sibiricus MM 739] Length = 188 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 95/185 (51%), Gaps = 35/185 (18%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR---GIVSEKES---------QI 72 VA++GA N GKSTL+N +G KVS TT+ I++ G V ++ ++ Sbjct: 4 VAIIGAENVGKSTLMNALLGKKVSETQPIPGTTKGIIKRAFGTVKIPKTMKNPFGGADEL 63 Query: 73 VFLDTPGIFN----------AKDSYHKLMIRLSWSTIKHADIVCLVVDS----HRELKVN 118 V +DT G+++ +++ + +L+ + I AD++ ++D+ HR ++ Sbjct: 64 VLIDTAGLYDPQYELRGKVLSEEKFKELL-----NEIASADVIINMIDAQYGLHRGME-K 117 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +H +LK + +I+++NKID + E++ E EI K + ++ M+S G +++ Sbjct: 118 LHHILK--FRYEKPIIVVVNKIDLIPKEKVEELREIIKKRLE-QEPIMLSLVTYEGFNEL 174 Query: 179 LNYLC 183 L L Sbjct: 175 LEKLV 179 >gi|254445513|ref|ZP_05058989.1| GTPase, putative [Verrucomicrobiae bacterium DG1235] gi|198259821|gb|EDY84129.1| GTPase, putative [Verrucomicrobiae bacterium DG1235] Length = 468 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 19/162 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG---I 80 VA+VG N GKS L NR G ++SIV TR I I + + +DT G + Sbjct: 4 TVAIVGRPNVGKSRLFNRLAGKRISIVHDMPGVTRDI---ITRDLDDGYTLMDTGGMGLV 60 Query: 81 FNAKDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 D+ K++ + +I A+++ VVD L + + + K R+IL++ Sbjct: 61 EGMSDTPGKIVDAVEGQIEFSIDAANLILFVVDGREGLMPLDKQMAERLRKGEKRVILVI 120 Query: 138 NKIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCD 176 NK+D EQ I K + + +VSA G G + Sbjct: 121 NKVDT-------EQTAINEKEFYRYGFGEPHLVSAEHGRGMN 155 >gi|163754018|ref|ZP_02161141.1| hypothetical protein KAOT1_20387 [Kordia algicida OT-1] gi|161326232|gb|EDP97558.1| hypothetical protein KAOT1_20387 [Kordia algicida OT-1] Length = 434 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+L+N +G IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSLINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRKAK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I+H+D+ LVVD+ R + ++ K +++++NK D Sbjct: 238 VKEDLEFYSVMRSIRAIEHSDVCLLVVDATRGFDSQVQNIFWLAEKNHKGIVILVNKWDL 297 Query: 143 VK 144 V+ Sbjct: 298 VE 299 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 11/170 (6%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKSTL NR + + +IV TR G + +DT G + Sbjct: 2 SNIVAIVGRPNVGKSTLFNRMIKRREAIVDSVSGVTRDRHYGKSDWNGKEFSLIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILIL 137 + D + + + + I AD + VVD + + +LL+ + K ++L++ Sbjct: 62 VGSDDIFEQEIDKQVELAIDEADAILFVVDVESGVTGMDEEVANLLRRVNK---PVLLVV 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D RL + E + + + + + +++ G G ++L+ L LP Sbjct: 119 NKVDAAN--RLHDATEFYS--LGLGEYYPIASINGSGTGEMLDALVEALP 164 >gi|146284521|ref|YP_001174674.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri A1501] gi|166234812|sp|A4VS81|MNME_PSEU5 RecName: Full=tRNA modification GTPase mnmE gi|145572726|gb|ABP81832.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri A1501] Length = 455 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + + Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTE 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE---IAKRSSRLILILNKID 141 D ++ ++ + S I AD + LVVD+ + L E + ++ LI NK D Sbjct: 279 DQVERIGVQRALSAIGEADRILLVVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKAD 338 >gi|157870969|ref|XP_001684034.1| GTP-binding protein-like protein [Leishmania major] gi|68127102|emb|CAJ04581.1| putative ras-like small GTPases [Leishmania major strain Friedlin] Length = 497 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 12/157 (7%) Query: 25 VALVGATNAGKSTLVNRF-----VGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 VA+VG N+GKS+L N + AK +IV TR V + + +DTPG Sbjct: 31 VAIVGRMNSGKSSLFNLLCEDPTMPAKKNIVKDFNGITRDCVEAHAALDDLHFTVIDTPG 90 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K ++ ++ T++ AD V ++ HDL++ +A + L++NK Sbjct: 91 LLGGK------LVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPTCLLVNK 144 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D V E ++ N+L + K SA K G D Sbjct: 145 MDLVPEEEEALVLDVYNRL-GLGKAVPFSARKREGLD 180 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 12/142 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA+VG TN+GK++LVNR VG + + + TTR + K ++ +DT G+ Sbjct: 231 VAIVGRTNSGKTSLVNRLVGYERNRAADESNTTRDPIEIACMYKGRKLKLIDTAGLARQR 290 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 + + + LS + I++A +V +V D+ E N +D+ L ++A+ +L N Sbjct: 291 YRTDREFLSRIHSLSLNEIRYAHVVIVVFDAT-EGHPNKYDMSILHKVAQEGRPFVLCAN 349 Query: 139 KIDCVKPERLLEQAEIANKLVF 160 K D V L+Q+ A + F Sbjct: 350 KWDAV-----LDQSATAEAIDF 366 >gi|88608743|ref|YP_506419.1| putative GTP-binding protein EngA [Neorickettsia sennetsu str. Miyayama] gi|88600912|gb|ABD46380.1| putative GTP-binding protein EngA [Neorickettsia sennetsu str. Miyayama] Length = 473 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 21/168 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS-IVRGIVSEKESQIVFLDTPGIFNA 83 V++VG N GKSTL N+ K SI + TR +VR I ++ LDT G FN Sbjct: 7 VSIVGKANVGKSTLFNKMAKEKRSITMDRKGVTRDVVVRRISLSDGKSLLLLDTAG-FNP 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR----SSRLILILNK 139 + H + + IK +D+V V+D+ K++ D+L R +S+++L+ NK Sbjct: 66 Q---HPETVERTEYAIKESDMVLFVIDN----KIDSEDMLFANWLRRNAGNSKIVLVCNK 118 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + L + F++SA G ++++Y+ S +P Sbjct: 119 SD--------RKDRDDCSLFGFQNVFLISAEHSLGLRELISYIESFIP 158 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 7/144 (4%) Query: 7 TFFNEHKDFVQDNS---RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 +F E D ++ S R VA++G N GKS+L+N+FVG +V TTR + Sbjct: 155 SFIPEQLDTPKNGSEEQRRIKVAILGQPNVGKSSLMNKFVGKDRVLVLPIAGTTRDPISD 214 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI 119 + K + +DT G+ + D K+ + T +D+V + D S+ L+ Sbjct: 215 ELQWKCTTFELVDTAGLRKKQRVTDGLEKICNSRALRTSAESDVVIFMCDISNFTLERQD 274 Query: 120 HDLLKEIAKRSSRLILILNKIDCV 143 L+ I ++ +IL+ NK D V Sbjct: 275 FLLMNRILEQGKPMILVGNKKDAV 298 >gi|28897386|ref|NP_796991.1| GTP-binding protein EngA [Vibrio parahaemolyticus RIMD 2210633] gi|308094331|ref|ZP_05888700.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AN-5034] gi|308095608|ref|ZP_05907112.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus Peru-466] gi|308125630|ref|ZP_05776379.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus K5030] gi|308126072|ref|ZP_05907679.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AQ4037] gi|31340057|sp|Q87S12|DER_VIBPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28805598|dbj|BAC58875.1| GTP-binding protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086906|gb|EFO36601.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus Peru-466] gi|308092889|gb|EFO42584.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AN-5034] gi|308106660|gb|EFO44200.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AQ4037] gi|308113011|gb|EFO50551.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus K5030] Length = 498 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL NR + ++V TR G ++E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGGIDG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ M S + I AD+V +VD L + + K +L++NKID Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPADEAIAAHLRKIEKPAMLVVNKIDG 123 Query: 143 VKPE 146 + + Sbjct: 124 IDAD 127 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 212 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRRG 271 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 272 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 331 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + + E+ +L F++ + +SA G G Sbjct: 332 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGV 368 >gi|332523593|ref|ZP_08399845.1| ribosome biogenesis GTPase Der [Streptococcus porcinus str. Jelinkova 176] gi|332314857|gb|EGJ27842.1| ribosome biogenesis GTPase Der [Streptococcus porcinus str. Jelinkova 176] Length = 436 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + ++ R+ + +IL +NK+D Sbjct: 65 NAPFMEQIKHQAQIAMDEADVIVFVV-SGKEGVTDADEYVAKMLYRTHKPVILAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + +S+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPLSSVHGIGTGDVLDAIVENLPV 165 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVF 74 V+DN +L+G N GKS+L+N +G I + TTR + ++ + Q Sbjct: 168 VEDNENIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFTDSDGQEFTM 227 Query: 75 LDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAK 128 +DT G+ + Y K + + I +D+V +V+++ RE I E K Sbjct: 228 IDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK 287 Query: 129 RSSRLILILNKIDCV 143 +I+++NK D + Sbjct: 288 ---GMIIVVNKWDTI 299 >gi|292806452|gb|ADE42356.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|259048142|ref|ZP_05738543.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175] gi|259035203|gb|EEW36458.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175] Length = 462 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + + +IVT TTR + V+ + + +DT G Sbjct: 222 RDGLKAAIVGRPNVGKSSLLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S + AD V L+++ EL+ LL++ + + I++LNK Sbjct: 282 IRETDDVVERIGVERSRKALNEADFVLLILNQSEELRDEDLRLLEQT--KDFKRIILLNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|242255962|gb|ACS88965.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ ++ + +D++ VVD S +LK L +E+ K +S L++ Sbjct: 67 KDALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINSNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|297746328|emb|CBI16384.3| unnamed protein product [Vitis vinifera] Length = 658 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 11/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS L NR VG +IV + TR + G + + + +DT G+ Sbjct: 190 VTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWGDYEFMVIDTGGVLTIS 249 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILNKID 141 S + + + I+ + ++ +VD L V I D L+ K S ++L Sbjct: 250 KSQDN---KQATAAIEESSVIIFLVDGQAGLSAADVEIADWLR---KNYSNKCIVLAVNK 303 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 C P++ + QA L F +SA G G ++L+ +CS L Sbjct: 304 CESPKKGIMQALEFWSLGFT--PLPISAVSGTGTGELLDLVCSGL 346 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/170 (22%), Positives = 81/170 (47%), Gaps = 15/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI-- 80 +A+VG N GKS+++N VG +IV+ TTR + + + Q +DT GI Sbjct: 364 AIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRR 423 Query: 81 ----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 ++ + L + ++ I+ +D+V LV+++ + + + + I + +++ Sbjct: 424 RAAVASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEREGKGCLIV 483 Query: 137 LNKIDCVKPERLLEQA-----EIANKLVFIEKTFMV--SATKGHGCDDVL 179 +NK D + P + + A ++ KL + +V +A GH D ++ Sbjct: 484 VNKWDTI-PNKNQQTATYYEQDVREKLRVLGWAPIVYSTAIAGHSVDKII 532 >gi|122702345|emb|CAL88363.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|148270478|ref|YP_001244938.1| GTP-binding protein EngA [Thermotoga petrophila RKU-1] gi|166225931|sp|A5IMD9|DER_THEP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|147736022|gb|ABQ47362.1| small GTP-binding protein [Thermotoga petrophila RKU-1] Length = 439 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 8/132 (6%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 V +VG N GKSTL N+ V K +IV + TR V+ V +DT G+F Sbjct: 2 ATVLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N +D + M ++ + I+ AD+V VVD + + L + K + IL+ NK + Sbjct: 62 NPQDIISQKMKEVTLNMIREADLVLFVVDGKKGITKEDESLADFLRKSNVDTILVANKTE 121 Query: 142 C-------VKPE 146 VKPE Sbjct: 122 NLREFEREVKPE 133 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N + + ++V+ TTR V V + VF+DT G+ Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDEEVFIDGRKYVFVDTAGLRRKS 242 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + S +I+ AD+V +V+D+ + + + + +R +++ NK Sbjct: 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRIAGLVERRGRASVVVFNKW 302 Query: 141 DCV--KPERLLEQAEI-ANKLVFIEKT--FMVSATKGHGCDDVLN 180 D V + +R E ++ K F++ + +SA KG D V++ Sbjct: 303 DLVEHREKRYDEFTKLFREKFYFVDYSPLIFISADKGWNIDKVID 347 >gi|319409465|emb|CBI83114.1| tRNA modification GTPase [Bartonella schoenbuchensis R1] Length = 435 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 10/138 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E + + D R V +VGA N+GKS+++NR G V+IVT + TTR + + Sbjct: 205 GERANILTDGLR---VVIVGAPNSGKSSIINRLAGRPVAIVTEEAGTTRDALEIRLILGG 261 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 + F DT G + +L I + I AD+V LV D + +++ + K Sbjct: 262 LPVFFTDTAGFRKTESKIEQLGIETAKQHIIDADLVILVDDMNNPQEIH-------LPKT 314 Query: 130 SSRLILILNKIDCVKPER 147 S+ + + NK+D K ++ Sbjct: 315 SAEIWRVGNKLDLYKGDK 332 >gi|313680391|ref|YP_004058130.1| ribosome-associated GTPase enga [Oceanithermus profundus DSM 14977] gi|313153106|gb|ADR36957.1| ribosome-associated GTPase EngA [Oceanithermus profundus DSM 14977] Length = 433 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 1/125 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L NR +G + ++V + TR + +V + + +DT G+++ Sbjct: 4 VVIVGRPNVGKSSLYNRLLGRRDAVVADEAGVTRDLKEAVVETERGKFKLVDTGGLWSG- 62 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D++ + + AD+V +VD EL +++ + +++ + L+ K+D K Sbjct: 63 DAWEPKIKEKVDRALAEADLVLFLVDGRAELAQADYEVADYLRRKNKPVRLVATKVDHPK 122 Query: 145 PERLL 149 E L Sbjct: 123 HEAYL 127 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 11/156 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKS+L+N +G IV+ + TTR + + ++ V +DT GI Sbjct: 176 IAIIGRPNAGKSSLLNAILGEDRVIVSDQPGTTRDSIDVELDYGGTRFVLVDTAGIRKRP 235 Query: 85 D-SYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + I+ + I+ AD+ L VD RELK + E +IL + K Sbjct: 236 ETAVEHFAIQRAHRVIQEADVAVLAVDPFELGDRELK-----MANEALDAGKPVILAVTK 290 Query: 140 IDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 D V K ER + +I KL +E +V + G Sbjct: 291 WDAVPKEERPEVRRQIREKLAHLEHLPIVYTSAATG 326 >gi|289191826|ref|YP_003457767.1| small GTP-binding protein [Methanocaldococcus sp. FS406-22] gi|288938276|gb|ADC69031.1| small GTP-binding protein [Methanocaldococcus sp. FS406-22] Length = 345 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 17/170 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N GKSTL+ + GA V I ++ TT+ I G + E I +DTPG+ + Sbjct: 172 TVVIAGYPNVGKSTLLKKLTGADVEINSYPF-TTKGINVGYMEE----IQMVDTPGLLD- 225 Query: 84 KDSYHKLMIRLSWSTIKH--ADIVCLVVDSHR------ELKVNIHDLLKEIAKRSSRLIL 135 + Y + I L + A+++ V+D+ E ++N+ +KE+ K +++ Sbjct: 226 RPLYERNDIELQAILALNYLANLILFVIDASEFCGYTIEEQINLLKEIKELFKVP--IVV 283 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +NKID V ER ++ E K + I + +SA KG G D++ L T Sbjct: 284 AINKIDLVDEER-IKAIEERLKELGISEILKISADKGIGLDELKESLKKT 332 >gi|254373237|ref|ZP_04988726.1| GTP-binding protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570964|gb|EDN36618.1| GTP-binding protein [Francisella novicida GA99-3549] Length = 450 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ N+ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-------AKRSSRLILILNK 139 I+ + I+ AD V V D + +V D +KEI + + + NK Sbjct: 279 IESEGIKRAIKKIQEADQVLFVTDDYTSSQVKFSD-IKEIIPEFYDQIPKDIDITYVHNK 337 Query: 140 IDCVK 144 ID +K Sbjct: 338 IDLLK 342 >gi|317452833|emb|CBL87852.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 23/170 (13%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHG----CDDVLNYL 182 NKID K ER + I K+F +S + G D +LN L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISVLVDAILNAL 166 >gi|294340463|emb|CAZ88844.1| GTPase involved in ribosome synthesis and maintenance [Thiomonas sp. 3As] Length = 465 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 7/168 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+LVG N GKSTL NR ++ +IV TR G++ + ++ +DT G Sbjct: 5 VSLVGRPNVGKSTLFNRMTRSRDAIVADMPGLTRDRHYGMLRMADRPVIVVDTGGFEPVV 64 Query: 85 DS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ H+ M R + I +D+V +VD L + E+ K ++L +NK + Sbjct: 65 DTGIVHQ-MARQTRQAIAESDLVVFLVDLRTGLSPQDLHIAAELRKTGKPILLAVNKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L AE + + + F +SA G D+L+ + LP P Sbjct: 124 RHGHPAL--AEFHE--LGLGEPFSISAAHGDSVPDLLDRILQALPSEP 167 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 10/169 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTLVN VG + I TTR + + + +DT G+ Sbjct: 202 LAIAGRPNVGKSTLVNALVGEERVIAFDMPGTTRDAIEVPFERDGRKFILIDTAGLRRKG 261 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V L++D+ + + + L+L NK D Sbjct: 262 KVFEAVEKFSVIKTLQAIEQANVVVLLLDATEGVSDQDAHIASFAVEAGRALVLAANKWD 321 Query: 142 CVKP---ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 V ERL+ I +L F+ K +SA G G + ++ + + Sbjct: 322 AVDTYGRERLM--VAIRQRLPFVSFAKFHSISARTGSGLNGLMKSVVAA 368 >gi|224534206|ref|ZP_03674784.1| tRNA modification GTPase TrmE [Borrelia spielmanii A14S] gi|224514308|gb|EEF84624.1| tRNA modification GTPase TrmE [Borrelia spielmanii A14S] Length = 464 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G+ NAGKS+L N F+ SIV+ TTR + DT G+ +A Sbjct: 225 LVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGVLFNIFDTAGLRDAD 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL-KEIAKRSSRLILILNKID 141 + +L I S S IK A +V V+D +L + DLL + K +++++ +LNKID Sbjct: 285 NFVERLGIEKSNSLIKEASLVIYVIDVSSDLTRD--DLLFIDSNKSNAKILFVLNKID 340 >gi|122700885|emb|CAL88031.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|303232256|ref|ZP_07318955.1| ribosome-associated GTPase EngA [Atopobium vaginae PB189-T1-4] gi|302481666|gb|EFL44727.1| ribosome-associated GTPase EngA [Atopobium vaginae PB189-T1-4] Length = 439 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 13/178 (7%) Query: 15 FVQDNSRSG----CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 VQ++S G +A++G N GKS+LVN+ S+V + TTR + ++ Sbjct: 168 IVQEDSPYGDDMLSIAVIGRPNVGKSSLVNKLSKTNRSLVANIAGTTRDAIDICFEYHDT 227 Query: 71 QIVFLDTPGIFNA----KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I +DT G+ +D + ++R + AD+ +V+D+ + L+ Sbjct: 228 PIRLVDTAGMRKKSQVHEDVEYYSLVR-GLQAMDKADVALMVIDAAEGMTEQDQKLMGMA 286 Query: 127 AKRSSRLILILNKIDCVKPE--RLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLN 180 R L+L++NKID + E +L + +A +L F K +SA G + +L+ Sbjct: 287 IDRGCALVLVINKIDLLSSEEDKLKLKDSLAIRLTFATWAKQVQISALTGKNTNKILD 344 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 14/168 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTLVNR K +IV TR + +DT GI + K Sbjct: 6 VAIVGRPNVGKSTLVNRLATTKTAIVHESRGVTRDRSYHDCDWRGVDFTLIDTGGIESQK 65 Query: 85 DS-YHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL----ILILN 138 + L IR + + AD++ VVD + + + +E+A+ RL L +N Sbjct: 66 STDVFALGIREQALLACEEADVIVQVVDG----TIGVLEEDEEVARIVRRLHKPCFLAVN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID PE +++ + + + +SAT G D+L+ + + Sbjct: 122 KID--NPETVIDDWMYLS--LGLGSPIAISATHGTQTGDLLDLIVESF 165 >gi|296269123|ref|YP_003651755.1| GTP-binding proten HflX [Thermobispora bispora DSM 43833] gi|296091910|gb|ADG87862.1| GTP-binding proten HflX [Thermobispora bispora DSM 43833] Length = 501 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 17/191 (8%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E++ + K + N VA+ G TNAGKS+L+NR GA V + T VR Sbjct: 259 EMSVVRQTKRRRRQNRDVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTVRRA 318 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNIHD 121 + DT G + H+L+ R + + AD++ VVD SH + + I Sbjct: 319 RTPDGRVFTLADTVGFV--RHLPHQLVEAFRSTLEEVADADLILHVVDGSHPDPESQIAA 376 Query: 122 LLKEIAKRSSRL----ILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + K A+ L I+++NK D P + +L E+ + +VSA G G D Sbjct: 377 VRKVFAEIEGALDIPEIIVINKADIADP-------VVLARLSAKERHSVVVSARTGEGID 429 Query: 177 DVLNYLCSTLP 187 +L + LP Sbjct: 430 RLLEAIARELP 440 >gi|296134494|ref|YP_003641741.1| tRNA modification GTPase TrmE [Thermincola sp. JR] gi|296033072|gb|ADG83840.1| tRNA modification GTPase TrmE [Thermincola potens JR] Length = 458 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V K +IVT TTR ++ VS + + LDT GI +D Sbjct: 225 IIGKPNVGKSSLLNALVKEKRAIVTDIPGTTRDVIEEFVSIRGIPLKILDTAGIRETEDV 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILNKID 141 K+ ++ S ++ AD VVD E+ + I LK+++ I+I NK D Sbjct: 285 VEKIGVQRSKEALEQADFFLFVVDVASEISSEDMEIAAFLKDLSG-----IIIANKTD 337 >gi|241662761|ref|YP_002981121.1| GTP-binding proten HflX [Ralstonia pickettii 12D] gi|240864788|gb|ACS62449.1| GTP-binding proten HflX [Ralstonia pickettii 12D] Length = 417 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A+ T + R + E +V DT G Sbjct: 203 SVSLVGYTNAGKSTLFNALTKARAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRD 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ + +L EI IL++N Sbjct: 263 LPTQLVAAFRATLEETVHADVLLHVVDAASTVKHEQME-QVDRVLDEIDASGIPQILVMN 321 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 KID + R+ ++ + + F VSA +G G D + L T Sbjct: 322 KIDAAEELRVAGPRIERDETGAVRRVF-VSAIEGTGLDLLREALVET 367 >gi|122700883|emb|CAL88030.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|156743465|ref|YP_001433594.1| GTP-binding protein EngA [Roseiflexus castenholzii DSM 13941] gi|156234793|gb|ABU59576.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941] Length = 494 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 15/175 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR +G + +IV TTR + G +DT G+ Sbjct: 4 IVALVGRPNVGKSTLFNRLIGERRAIVEDIPGTTRDRLYGDTEWNGRVFTVVDTAGLLLD 63 Query: 84 KDSYHKLMIRLSWS---------TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-L 133 +D +L + I +D + +VDS RE + E+ +R+ + + Sbjct: 64 EDDLTPGTPQLEIARRVREQAELAIAESDAIIFIVDS-REGLTAADAAVAEVLRRTDKPV 122 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +L NK D ER + E + + + +SA G G DVL+ + LP+ Sbjct: 123 VLAANKAD--NHERAMNAVEF--YALNLGEPIPMSAYHGIGVGDVLDRVTEALPV 173 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+NR +G + S+V+ TTR + + + + +DT GI Sbjct: 185 IAIVGRPNVGKSSLLNRLIGQERSVVSDIPGTTRDSIDTPIEIGGVRALLIDTAGIRRRG 244 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + I+ AD+ L++D+ + + I + + +++NK D Sbjct: 245 KIDRGLERYSVMRALRAIERADVALLLIDATEGVTAQDTHIAGMILESLKGVAILVNKWD 304 Query: 142 -CVKPERLLEQ----AEIANKLVFIEKTFMVSATKGHGCDDVL 179 VK +Q A K + +SA G D VL Sbjct: 305 LVVKDAYTFDQFSRHVREAFKFMSYAPLLFISAKTGQRVDKVL 347 >gi|77920732|ref|YP_358547.1| tRNA modification GTPase TrmE [Pelobacter carbinolicus DSM 2380] gi|77546815|gb|ABA90377.1| tRNA modification GTPase trmE [Pelobacter carbinolicus DSM 2380] Length = 461 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G N GKS+L+N +G +IVT TTR + + + +DT GI N Sbjct: 228 VLIFGKPNVGKSSLMNGLLGEARAIVTDIPGTTRDTIEEDLVLGGLPLRIVDTAGIRNTL 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + +R + S ++ AD+V LV+D +E+ + DLL R+ +++++NK D Sbjct: 288 DPVEEEGVRRARSKVESADLVLLVIDGSQEMGED--DLLALEFCRNREVLVVINKCD 342 >gi|317506861|ref|ZP_07964633.1| ribosome-associated GTPase EngA [Segniliparus rugosus ATCC BAA-974] gi|316254789|gb|EFV14087.1| ribosome-associated GTPase EngA [Segniliparus rugosus ATCC BAA-974] Length = 449 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNRFVG + ++V TR V + DT G Sbjct: 12 VVAVVGRPNVGKSTLVNRFVGRRAAVVEDVPGVTRDRVSYDAEWGGRSFLVQDTGGWEPD 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + AD++ LVVD+ L K + + + L+ NK D Sbjct: 72 ATGIGLSIAQQAELAMATADVILLVVDAQAGPTGVDEALAKSLRRSKKPVFLVANKSDNP 131 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +E + + + + VSA G G D+L+ ++P Sbjct: 132 Q----IEDESSGLWSLGLGRPYPVSALHGKGSGDLLDAALESVP 171 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + R VALVG N GKS+L+N+ G S+V TT V I++ + + F+DT Sbjct: 179 EGPRPRRVALVGRPNVGKSSLINKLAGETRSVVNEMAGTTVDPVDSIITLDDEEWQFVDT 238 Query: 78 PGIFN--AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ S H+ + + S I+ A++V +++D+ L + + + ++ Sbjct: 239 AGLRRKVGHASGHEFYAAVRTKSAIEAAEVVIVLIDASVPLTEQDQRIFGMVGEAGRAMV 298 Query: 135 LILNKIDCVKPER 147 L NK D V +R Sbjct: 299 LACNKWDLVDEDR 311 >gi|311070643|ref|YP_003975566.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942] gi|310871160|gb|ADP34635.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942] Length = 459 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT GI +D Sbjct: 226 IIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + S +K AD++ LV++ EL L + A + +I+ILNK D Sbjct: 286 VEKIGVERSRQVLKEADLILLVLNYSEELSEEDVKLFE--AVKGMDVIVILNKTD 338 >gi|292806626|gb|ADE42443.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSVLNL 168 >gi|167562554|ref|ZP_02355470.1| GTP-binding protein EngA [Burkholderia oklahomensis EO147] Length = 445 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D + G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGQPEESEEDAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKRYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++A KL F++ K+ +SA + G Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVRERAKADLARKLKFLDFAKSHFISAAEKTGIGP 340 Query: 175 ----CDDVLNYLCSTLP 187 DD LP Sbjct: 341 LMRSVDDAYAAAMKKLP 357 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGVRPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A+ + + +SA G G D++N Sbjct: 124 MK------YTAVASDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|145351972|ref|XP_001420333.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580567|gb|ABO98626.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 555 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 8/128 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIF 81 VA++G N GKS+L+N G SIV+ TTR + +V +K + + +DT GI Sbjct: 284 TVAIIGRPNVGKSSLLNGLAGEARSIVSDFSGTTRDSIDTLVEDKYTGRKFTLIDTAGIR 343 Query: 82 ------NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 + D KL + + +K AD+V LV+D L + + ++L Sbjct: 344 RRTQVKSGTDGAEKLSVGRALQAMKRADVVVLVIDGTEGPSQQDFVLAERATQEGCAIVL 403 Query: 136 ILNKIDCV 143 +NK D V Sbjct: 404 CINKWDLV 411 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 28/189 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIFN 82 VA+VG N GKS L NR G K +IV + TR VR E E + +DT G+ N Sbjct: 89 VAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRMYVRAYWGEHE--FMMVDTGGLEN 146 Query: 83 ---------AKDSYHKLMI------RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 D+ + I + ++ A ++ VVD L D+ + Sbjct: 147 LPANPEGGPKTDTVGGVEILPGMIEAQAAEAVREASVLIFVVDGQVGLTAADMDIFAWLR 206 Query: 128 KRSSR--LILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + S+ L L +NK + +++LE + + VSA G G ++L+ +C Sbjct: 207 RTHSKIPLHLAVNKCESTTKGEDQILEFWSLGDVT-----PLAVSAISGTGTGELLDNMC 261 Query: 184 STLPLAPWV 192 +TLP P V Sbjct: 262 ATLPPPPQV 270 >gi|122701711|emb|CAL88245.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|118589883|ref|ZP_01547287.1| GTP binding protein-like [Stappia aggregata IAM 12614] gi|118437380|gb|EAV44017.1| GTP binding protein-like [Stappia aggregata IAM 12614] Length = 426 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR + V T +R + +I+ DT G + Sbjct: 201 VVALVGYTNAGKSTLFNRMTESDVFAKDLLFATLDPTLRKVALPHGKEIILSDTVGFISD 260 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEI------AKRSSRLILI 136 ++ R + + AD++ V D SH + + D+ K + A + +I + Sbjct: 261 LPTHLVAAFRATLEEVLEADLILHVRDISHPDTEAQAEDVKKTLTDLGVDALTGAPIIEV 320 Query: 137 LNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKIDC+ P E+LLE A E +SA G G + Sbjct: 321 WNKIDCLDPAYREKLLEDA-------GDEGPIALSALTGEGIE 356 >gi|317012645|gb|ADU83253.1| GTP-binding protein EngA [Helicobacter pylori Lithuania75] Length = 461 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + E+A A I K+F +S + G +++ + + L L Sbjct: 128 DKEK---ERA-YAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 169 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 4/154 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + IV LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIVLLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 A + K F+E +++ + C Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKAC 354 >gi|311085766|gb|ADP65848.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 453 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G N+GKS+L+N + +IVT TTR ++ +S + +DT G+ + Sbjct: 219 IVIAGLPNSGKSSLLNILSYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTD 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ I +W I+ +D V V+D S + K D ++ I +++ +LNK D Sbjct: 279 DKVERIGIMRAWEMIRKSDHVLFVIDKTLSKSKQKKICDDFMRNILNNKTQVTFVLNKND 338 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +K E +++ + FI +SA G G + Sbjct: 339 LIKDEFGIKEID---GTAFIS----ISARTGEGVN 366 >gi|292806538|gb|ADE42399.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR K++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAREKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|257898848|ref|ZP_05678501.1| GTP-binding protein engA [Enterococcus faecium Com15] gi|257836760|gb|EEV61834.1| GTP-binding protein engA [Enterococcus faecium Com15] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I+ AD++ VV S RE + +++ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIEEADVIICVV-SGREGVTDADEMVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + E + + + + VS + G G D+L+ Sbjct: 123 -NPEMRNDIYEFYS--LGLGDPYPVSGSHGLGIGDILD 157 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + IV+ TTR +I VSE + + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSENGQKFLMIDTAGMRKRG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVKPE----RLLEQAEIANKLVFIEKT---FMVSATK 171 VK E R EQ EI ++ +++ F+ + TK Sbjct: 298 LVKKETNTMRDFEQ-EIRDEFRYLDYAPIVFVSAVTK 333 >gi|237747089|ref|ZP_04577569.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS] gi|229378440|gb|EEO28531.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS] Length = 462 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 V L G TN GKS+L+N G+ ++IVT TTR + + + + +DT GI Sbjct: 228 VVLAGQTNVGKSSLLNVLTGSDIAIVTPVAGTTRDKITETIQLEGIPVTLIDTAGIRPST 287 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 A+D ++ I +W+ I+ AD++ ++D+ Sbjct: 288 AEDEVERIGIERAWTEIEKADVILHLLDA 316 >gi|171911579|ref|ZP_02927049.1| hypothetical protein VspiD_10405 [Verrucomicrobium spinosum DSM 4136] Length = 431 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 13/163 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN--A 83 A+VG TNAGKS+L+N+ ++V T + R + Q++ DT G Sbjct: 213 AIVGYTNAGKSSLLNKLTQSEVLAEDKLFATLDTSTRRMELPDGQQLLLTDTVGFVRRLP 272 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNK 139 D L +T+ AD + VVD S ++LKEI R+IL+LNK Sbjct: 273 HDLVQSFRATLEETTL--ADFLIHVVDASHPSAHTFYETTTEVLKEIGAGDKRVILVLNK 330 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +D V E L E+ N+ +S G G DD+L+ L Sbjct: 331 MDLVTEESRLH--ELKNQF---PDAVQISVQTGQGIDDLLHKL 368 >gi|122700715|emb|CAL87946.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILDTLNL 168 >gi|8134431|sp|Q49884|DER_MYCLE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|467147|gb|AAA50911.1| u0247e [Mycobacterium leprae] Length = 461 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 85/193 (44%), Gaps = 16/193 (8%) Query: 3 MGEITFFNEHKDFVQDNSR----SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR 58 M + +++ D+ D+S VA+VG N GKSTLVNR +G + ++V TR Sbjct: 1 MSQDGTWSDESDWELDDSDLAEFGPVVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTR 60 Query: 59 SIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN 118 V + V DT G +L+ + ++ AD V LVVD + V Sbjct: 61 DRVSYDAMWTGRRFVVQDTGGWEPDAKGLKRLVAEQASVAMRTADAVILVVD----VGVG 116 Query: 119 IHDLLKEIAK---RSSRLI-LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 D + A+ RS +L+ L NK+D K E A L E +SA G G Sbjct: 117 ATDADEAAARILLRSGKLVFLAANKVDGEKGE---SDASALWSLGLGEP-HAISAMHGRG 172 Query: 175 CDDVLNYLCSTLP 187 D+L+ + + LP Sbjct: 173 VADLLDKVLAALP 185 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 18/185 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ F+DT G+ Sbjct: 200 VALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIEMGGRVWRFVDTAGLRRKV 259 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + I A++V +++D+ L +L + L+L NK D Sbjct: 260 GQASGHEFYASVRTHGAIDSAEVVIMLIDASEPLTGQDQRVLSMVIDAGRALVLAFNKWD 319 Query: 142 CVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL----NYLCS------TLP 187 V +R LLE+ EI +LV + + +SA G ++ N L S T P Sbjct: 320 LVDEDRCDLLER-EIDRELVQVRWAQRVNISAKTGRAVQKLVPAMENSLASWDTRIATGP 378 Query: 188 LAPWV 192 L W+ Sbjct: 379 LNIWI 383 >gi|85715518|ref|ZP_01046499.1| GTP-binding protein, [Nitrobacter sp. Nb-311A] gi|85697713|gb|EAQ35589.1| GTP-binding protein, [Nitrobacter sp. Nb-311A] Length = 457 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 100/241 (41%), Gaps = 20/241 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R + + + DT G + Sbjct: 225 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRSLALPHGGKAMLSDTVGFISN 284 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA---KRSSRLILI 136 + R + + ADI+ V D SH + + HD +L ++ ++R++ + Sbjct: 285 LPTQLVAAFRATLEEVMEADIILHVRDISHEDTEPQQHDVEAVLHQLGIERGGAARILEV 344 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL----NYLCSTLPLAPWV 192 NKID ++ E I + F+VSA G G + +L + L +T Sbjct: 345 WNKIDRFDVDQRKELENIVARRSTDVPCFLVSAETGEGVETLLAAIEDRLAATRTTLDLS 404 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 A + + H +E+ L KE+ +T + +E K IL+ + V R Sbjct: 405 VDASNGAAISWLHRNSEV--------LAKELRDGRYDMTVRADETKR-DILVNRYGAVPR 455 Query: 253 P 253 P Sbjct: 456 P 456 >gi|296446239|ref|ZP_06888186.1| ribosome-associated GTPase EngA [Methylosinus trichosporium OB3b] gi|296256276|gb|EFH03356.1| ribosome-associated GTPase EngA [Methylosinus trichosporium OB3b] Length = 468 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 13/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A++G N GKSTL NR VG K+++V + TR G + + +DT G+ Sbjct: 7 TLAIIGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGEARLADLRFTIIDTAGLEEG 66 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNK 139 A + M + + I+ AD + ++D+ + + DL++ K +++L NK Sbjct: 67 ASATLEGRMRAQTEAAIESADAILFMIDARVGVTPDDKYFADLVRRAGK---KVVLAANK 123 Query: 140 IDCVKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + K E L+E E+ + +SA G G ++ + L LP A Sbjct: 124 SEGKKGEAGLVESYELG-----LGDPVPLSAEHGEGLGELYDALLEALPEA 169 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 24/221 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL+NR +G + + TR + ++ ++ DT G+ Sbjct: 202 IAVVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIGVEFRWRDREMKLFDTAGLRKRA 261 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 D KL + ++ +++V L++DS + DL + ++A R R ++I L K Sbjct: 262 RVVDKLEKLAGADALRAVRFSEVVVLLLDSA--IPFEKQDLTIADLAAREGRAVVIALGK 319 Query: 140 IDCV-----KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD----------DVLNYLCS 184 D V + +L E+AE + VS G+G + +V N S Sbjct: 320 WDAVDDPGTRLAKLREEAERLLPQIRGCPVVPVSGATGYGLEGLMRAVLEAHEVWNRRIS 379 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPY 225 T L W+ SA I + P + + + PY Sbjct: 380 TARLNRWLESA--IDETPPPAVSGRRIKIRYMTQAKARPPY 418 >gi|227551166|ref|ZP_03981215.1| GTP-binding protein EngA [Enterococcus faecium TX1330] gi|257896210|ref|ZP_05675863.1| GTP-binding protein engA [Enterococcus faecium Com12] gi|293379548|ref|ZP_06625690.1| ribosome-associated GTPase EngA [Enterococcus faecium PC4.1] gi|293570249|ref|ZP_06681318.1| GTP-binding protein EngA [Enterococcus faecium E980] gi|227179728|gb|EEI60700.1| GTP-binding protein EngA [Enterococcus faecium TX1330] gi|257832775|gb|EEV59196.1| GTP-binding protein engA [Enterococcus faecium Com12] gi|291609656|gb|EFF38917.1| GTP-binding protein EngA [Enterococcus faecium E980] gi|292641857|gb|EFF60025.1| ribosome-associated GTPase EngA [Enterococcus faecium PC4.1] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I+ AD++ VV S RE + +++ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIEEADVIICVV-SGREGVTDADEMVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + E + + + + VS + G G D+L+ Sbjct: 123 -NPEMRNDIYEFYS--LGLGDPYPVSGSHGLGIGDILD 157 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + IV+ TTR +I VSE + + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRKRG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGVIIVVNKWD 297 Query: 142 CVKPE----RLLEQAEIANKLVFIEKT---FMVSATK 171 VK E R EQ EI ++ +++ F+ + TK Sbjct: 298 LVKKETNTMRDFEQ-EIRDEFRYLDYAPIVFVSAVTK 333 >gi|152981181|ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacterium sp. Marseille] gi|205829159|sp|A6T4D6|MNME_JANMA RecName: Full=tRNA modification GTPase mnmE gi|151281258|gb|ABR89668.1| tRNA modification GTPase [Janthinobacterium sp. Marseille] Length = 465 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G N GKS+L+N G+ V+IVT TTR V + + + +DT GI +A Sbjct: 226 IVLAGQPNVGKSSLLNALAGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDAS 285 Query: 85 DS---YHKLMIRLSWSTIKHADIVCLVVDSHR 113 D+ ++ I +W+ +K AD++ ++D++R Sbjct: 286 DATDEVERIGIERTWAAVKTADVIIHMLDANR 317 >gi|122700767|emb|CAL87972.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|159899958|ref|YP_001546205.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus ATCC 23779] gi|159892997|gb|ABX06077.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus ATCC 23779] Length = 454 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 12/178 (6%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V++ +R+ ALVG NAGKS+L+N + + +IVT TTR + + +V + Sbjct: 213 VREGARA---ALVGRPNAGKSSLMNALLRTERAIVTAIPGTTRDTLEETANLGGIPVVLI 269 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DT GI D ++ + S + + AD+V L++D + L + + +R + I+ Sbjct: 270 DTAGITETDDVVERIGVERSRAALSKADLVLLLIDGSQPLSPEDLAIAQLTHERPT--IV 327 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD----DVLNYLCSTLPLA 189 I K D + L + KL + +S+ G G D V L LPL+ Sbjct: 328 IATKADLGQHADLTALTQTHPKL---RGSIAISSQAGTGLDYLGTMVAEQLLGGLPLS 382 >gi|54025798|ref|YP_120040.1| putative GTP-binding protein [Nocardia farcinica IFM 10152] gi|54017306|dbj|BAD58676.1| putative GTP-binding protein [Nocardia farcinica IFM 10152] Length = 548 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 14/193 (7%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + +S VA+VG TNAGKS+L+N G+ V + T Sbjct: 292 EIREMKTARETKRARRASSGIPQVAIVGYTNAGKSSLMNALTGSGVLVQDALFATLDPTT 351 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH--------R 113 R + ++VF DT G + R + + AD++ VVD + Sbjct: 352 RRAELDDGREVVFTDTVGFVRHLPTQLVEAFRSTLEEVTGADLLLHVVDGSDPDPAGQIK 411 Query: 114 ELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH 173 ++ I D++KE + +L++NKID + P R E + F VSA G Sbjct: 412 AVREVIADVIKESGAAAPPELLVVNKIDAISPMRRTELRGLLPDAEF------VSAHTGA 465 Query: 174 GCDDVLNYLCSTL 186 G D + L L Sbjct: 466 GVDGLRARLNEVL 478 >gi|28199496|ref|NP_779810.1| GTP-binding protein EngA [Xylella fastidiosa Temecula1] gi|182682229|ref|YP_001830389.1| GTP-binding protein EngA [Xylella fastidiosa M23] gi|32129520|sp|Q87B41|DER_XYLFT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691082|sp|B2I7V0|DER_XYLF2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28057611|gb|AAO29459.1| GTP-binding protein [Xylella fastidiosa Temecula1] gi|182632339|gb|ACB93115.1| small GTP-binding protein [Xylella fastidiosa M23] gi|307578503|gb|ADN62472.1| GTP-binding protein EngA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 465 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL N + ++V + TR G+ + + +DT G+ Sbjct: 4 LVALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D R + + AD+V VV+ D+L + K S +L++NKID Sbjct: 64 KEDGLAGATARQARLAVAEADVVLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V + +E A+ VSA G DD++ + + LP Sbjct: 124 VSDTTV--HSEFAH--YGFSDVVPVSAAHRQGLDDLIEQVLAWLP 164 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 F +D+ R +A VG N GKSTLVNR +G + IV+ TTR + + E + Sbjct: 172 FNEDSERI-HIAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDELRYRL 230 Query: 75 LDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +DT G+ +++ K + I+ + L++D+ + +L I Sbjct: 231 VDTAGLRRKSKVEEAVEKFSAFKTLQAIEQCQVAVLLLDAGEGVTDQDATVLAAILDAGK 290 Query: 132 RLILILNKIDCVKPERLLEQAE--IANKLVFIEKTFMVSATKGHGC 175 L++ +NK D + + EQAE ++ KL F+ +V + HG Sbjct: 291 ALVVAMNKWDGLATYQ-REQAEDLLSRKLGFVNWAEVVRLSAKHGS 335 >gi|124267181|ref|YP_001021185.1| GTP-binding protein EngA [Methylibium petroleiphilum PM1] gi|166225824|sp|A2SHB1|DER_METPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|124259956|gb|ABM94950.1| putative GTP-binding protein EngA [Methylibium petroleiphilum PM1] Length = 446 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 7/159 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR ++ +IV TR G E + + +DT G Sbjct: 4 VLALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGDGRLGEREFIVVDTGGFEPT 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A+ +K M + + + +D+V VVD + HD+ + + +++L NK Sbjct: 64 AESGIYKEMAKQTRQAVAESDVVIFVVDVRAGVTGQDHDIARYLRTAGKKVLLAANKA-- 121 Query: 143 VKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLN 180 E +LE ++A + + + VS+ G G +L Sbjct: 122 ---EGMLEGIQLAEFYELGMGEPLAVSSAHGQGIRSLLT 157 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 7/177 (3%) Query: 9 FNEHKDFVQDN-SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F+E D D+ R +A+ G N GKSTL+N ++G + + TTR + Sbjct: 165 FDEPDDLALDDPERPIRLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFER 224 Query: 68 KESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 + +DT G+ +S K + + I A++V L++D+ + + + Sbjct: 225 NGQKFELIDTAGLRRKGKVFESIEKFSVVKTLQAIADANVVLLLLDATQGVTDQDAHIAG 284 Query: 125 EIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 I ++L +NK D V +R L Q I +L F++ +SA K G V Sbjct: 285 YILDSGRAVVLAVNKWDAVDSYQRELLQRSIEQRLAFLKFAPVLHISAIKRQGLGPV 341 >gi|307307991|ref|ZP_07587709.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti BL225C] gi|307319941|ref|ZP_07599364.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti AK83] gi|306894481|gb|EFN25244.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti AK83] gi|306901395|gb|EFN31999.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti BL225C] Length = 476 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 5/164 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA++G N GKSTL NR VG K+++V TR G + + +DT G+ + Sbjct: 4 TVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEES 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + DS M + + I AD+ VVD+ L L + + +R ++++ NK + Sbjct: 64 SPDSLQGRMWAQTEAAIDEADLSLFVVDAKAGLTPADQTLAEMLRRRGKPVVVVANKSEA 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E A + + + +SA G G D+ + + + L Sbjct: 124 RGSEGGFYDAFT----LGLGEPCPISAEHGQGMLDLRDAIVAAL 163 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 22/191 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 +E + D ++ VA+VG NAGKSTL+NRF+G + + TR + + Sbjct: 192 DEEVEPAYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 251 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I DT G+ ++ KL + + I+ A+ V +V D+ + ++ + Sbjct: 252 RTIKMFDTAGMRRKAKVQEKLEKLSVADALRAIRFAETVVIVFDATVPFEKQDLQIVDLV 311 Query: 127 AKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + +L NK D V K ERLL QA + +S G+G Sbjct: 312 LREGRAAVLAFNKWDLVENWQALLVDLREKTERLLPQARGI-------RAVPISGHTGYG 364 Query: 175 CDDVLNYLCST 185 D ++ + T Sbjct: 365 LDRLMQAIIET 375 >gi|257877995|ref|ZP_05657648.1| GTP-binding protein engA [Enterococcus faecium 1,230,933] gi|257881218|ref|ZP_05660871.1| GTP-binding protein engA [Enterococcus faecium 1,231,502] gi|257884882|ref|ZP_05664535.1| GTP-binding protein engA [Enterococcus faecium 1,231,501] gi|257889806|ref|ZP_05669459.1| GTP-binding protein engA [Enterococcus faecium 1,231,410] gi|257892257|ref|ZP_05671910.1| GTP-binding protein engA [Enterococcus faecium 1,231,408] gi|258616518|ref|ZP_05714288.1| GTP-binding protein EngA [Enterococcus faecium DO] gi|260559046|ref|ZP_05831232.1| GTP-binding protein engA [Enterococcus faecium C68] gi|261207580|ref|ZP_05922265.1| GTP-binding protein engA [Enterococcus faecium TC 6] gi|289565092|ref|ZP_06445545.1| ribosome-associated GTPase EngA [Enterococcus faecium D344SRF] gi|293556739|ref|ZP_06675302.1| ribosome-associated GTPase EngA [Enterococcus faecium E1039] gi|293563397|ref|ZP_06677846.1| GTP-binding protein EngA [Enterococcus faecium E1162] gi|294614846|ref|ZP_06694741.1| GTP-binding protein EngA [Enterococcus faecium E1636] gi|294618677|ref|ZP_06698211.1| GTP-binding protein EngA [Enterococcus faecium E1679] gi|294621937|ref|ZP_06701085.1| GTP-binding protein EngA [Enterococcus faecium U0317] gi|314938008|ref|ZP_07845318.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a04] gi|314942006|ref|ZP_07848867.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133C] gi|314948741|ref|ZP_07852113.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0082] gi|314951759|ref|ZP_07854798.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133A] gi|314991834|ref|ZP_07857292.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133B] gi|314995875|ref|ZP_07860962.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a01] gi|257812223|gb|EEV40981.1| GTP-binding protein engA [Enterococcus faecium 1,230,933] gi|257816876|gb|EEV44204.1| GTP-binding protein engA [Enterococcus faecium 1,231,502] gi|257820720|gb|EEV47868.1| GTP-binding protein engA [Enterococcus faecium 1,231,501] gi|257826166|gb|EEV52792.1| GTP-binding protein engA [Enterococcus faecium 1,231,410] gi|257828636|gb|EEV55243.1| GTP-binding protein engA [Enterococcus faecium 1,231,408] gi|260074803|gb|EEW63119.1| GTP-binding protein engA [Enterococcus faecium C68] gi|260077963|gb|EEW65669.1| GTP-binding protein engA [Enterococcus faecium TC 6] gi|289163099|gb|EFD10946.1| ribosome-associated GTPase EngA [Enterococcus faecium D344SRF] gi|291592308|gb|EFF23922.1| GTP-binding protein EngA [Enterococcus faecium E1636] gi|291595060|gb|EFF26403.1| GTP-binding protein EngA [Enterococcus faecium E1679] gi|291598486|gb|EFF29555.1| GTP-binding protein EngA [Enterococcus faecium U0317] gi|291601071|gb|EFF31360.1| ribosome-associated GTPase EngA [Enterococcus faecium E1039] gi|291604658|gb|EFF34143.1| GTP-binding protein EngA [Enterococcus faecium E1162] gi|313589979|gb|EFR68824.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a01] gi|313593645|gb|EFR72490.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133B] gi|313596038|gb|EFR74883.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133A] gi|313599258|gb|EFR78103.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133C] gi|313642583|gb|EFS07163.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a04] gi|313644807|gb|EFS09387.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0082] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I+ AD++ VV S RE + +++ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIEEADVIICVV-SGREGVTDADEMVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + E + + + + VS + G G D+L+ Sbjct: 123 -NPEMRNDIYEFYS--LGLGDPYPVSGSHGLGIGDILD 157 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + IV+ TTR +I VSE + + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRKRG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVKPE----RLLEQAEIANKLVFIEKT---FMVSATK 171 VK E R EQ EI ++ +++ F+ + TK Sbjct: 298 LVKKETNTMRDFEQ-EIRDEFRYLDYAPIVFVSAVTK 333 >gi|254414160|ref|ZP_05027927.1| tRNA modification GTPase TrmE [Microcoleus chthonoplastes PCC 7420] gi|196178835|gb|EDX73832.1| tRNA modification GTPase TrmE [Microcoleus chthonoplastes PCC 7420] Length = 460 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 10/157 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G +A+VG N GKS+L+N + + +IVT TTR +V + I LDT G Sbjct: 223 RTGLNIAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S + AD++ LV+++ + ++ ++ R LIL++NK Sbjct: 283 IRETVDQVEKIGVERSRRAAEAADLIVLVIEATAGWSSDDQEIYTQVKHRP--LILVINK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D L A+ + I++ + TK G + Sbjct: 341 TD-------LAPADSVSYPDSIDRVITAAVTKNEGIE 370 >gi|317180598|dbj|BAJ58384.1| GTP-binding protein EngA [Helicobacter pylori F32] Length = 459 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A + K+F +S + G +++ + + L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAILNALNL 169 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + IV LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIVLLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|293374967|ref|ZP_06621262.1| ribosome-associated GTPase EngA [Turicibacter sanguinis PC909] gi|325843340|ref|ZP_08167923.1| ribosome biogenesis GTPase Der [Turicibacter sp. HGF1] gi|292646377|gb|EFF64392.1| ribosome-associated GTPase EngA [Turicibacter sanguinis PC909] gi|325489369|gb|EGC91742.1| ribosome biogenesis GTPase Der [Turicibacter sp. HGF1] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG++VSIV + TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGSRVSIVEDEPGITRDRIYSSGEWLTRKFNVIDTGGIEIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + AD++ V ++ + ++ + K ++LI+NK+D + Sbjct: 65 DEPFMRQIKYQAEIAMDEADVIVFVTNARDGITQADQEVANMLYKTKKPVVLIVNKVDDI 124 Query: 144 K-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E++ E + + SA G G D+L+ + +P Sbjct: 125 NFKEQIYEFYSLG-----LGDPIATSAIHGIGFGDMLDQIVLNMP 164 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+L N +G + IV+ TTR + ++ + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLTNALLGEERVIVSDIAGTTRDAIDTEFTKDGQKYVVIDTAGMRKRGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + S I+ +D+ +V+D+ + L + + +++++NK D Sbjct: 239 VYETTEKYSVLRALSAIERSDVCLIVIDASKGLIEQDKRVAGYAHEAGKAVVIVVNKWDA 298 Query: 143 VKPE 146 ++ + Sbjct: 299 IEKD 302 >gi|242255924|gb|ACS88946.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQVSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALDL 168 >gi|190890107|ref|YP_001976649.1| GTP-binding protein [Rhizobium etli CIAT 652] gi|238692551|sp|B3Q039|ENGB_RHIE6 RecName: Full=Probable GTP-binding protein EngB gi|190695386|gb|ACE89471.1| GTP-binding protein [Rhizobium etli CIAT 652] Length = 217 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 23/187 (12%) Query: 25 VALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQI---VFLDT 77 VA G +N GKS+L+N VG A+ S + Q V S + + +D Sbjct: 33 VAFAGRSNVGKSSLINALVGQKGLARTSNTPGRTQELNYFVPDGYSGEGGDLPPMAIVDM 92 Query: 78 PGIFNAK------DSYHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 PG A+ D + KL+ +T+K V +++DS +K N D+L + K Sbjct: 93 PGYGYAQAPKEQVDKWTKLVFDYLRGRATLKR---VYVLIDSRHGIKKNDEDVLTLLDKA 149 Query: 130 SSRLILILNKIDCVK----PERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + L+L K D +K P+ L E A+ I + S+ KG G DD+ + Sbjct: 150 AVSYQLVLTKTDKIKAPAVPKLLAETADKIRKRPAAYPAVLSTSSEKGDGLDDLRQAIAQ 209 Query: 185 TLPLAPW 191 T+ +A W Sbjct: 210 TVGIANW 216 >gi|122702491|emb|CAL88436.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +EI K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREIFKINPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + I K+F +S + G +++ + + L L Sbjct: 127 DKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122701583|emb|CAL88181.1| GTPase [Helicobacter pylori] gi|122702269|emb|CAL88325.1| GTPase [Helicobacter pylori] gi|292806628|gb|ADE42444.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806638|gb|ADE42449.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|16264869|ref|NP_437661.1| GTP-binding protein EngA [Sinorhizobium meliloti 1021] gi|26006728|sp|Q92UK6|DER_RHIME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15141008|emb|CAC49521.1| putative GTP-binding protein [Sinorhizobium meliloti 1021] Length = 476 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 5/166 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 S VA++G N GKSTL NR VG K+++V TR G + + +DT G+ Sbjct: 2 SFTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLE 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ DS M + + I AD+ VVD+ L L + + +R ++++ NK Sbjct: 62 ESSPDSLQGRMWAQTEAAIDEADLSLFVVDAKAGLTPADQTLAEMLRRRGKPVVVVANKS 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E A + + + +SA G G D+ + + + L Sbjct: 122 EARGSEGGFYDAFT----LGLGEPCPISAEHGQGMLDLRDAIVAAL 163 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 22/191 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 +E + D ++ VA+VG NAGKSTL+NRF+G + + TR + + Sbjct: 192 DEEVEPAYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 251 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I DT G+ ++ KL + + I+ A+ V +V D+ + ++ + Sbjct: 252 RTIKMFDTAGMRRKAKVQEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLV 311 Query: 127 AKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + +L NK D V K ERLL QA + +S G+G Sbjct: 312 LREGRAAVLAFNKWDLVENWQALLVDLREKTERLLPQARGI-------RAVPISGHTGYG 364 Query: 175 CDDVLNYLCST 185 D ++ + T Sbjct: 365 LDRLMQAIIET 375 >gi|319651095|ref|ZP_08005229.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2] gi|317397265|gb|EFV77969.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2] Length = 461 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 221 REGLSTVIVGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ EL ++ K A +I+I+NK Sbjct: 281 IRETEDIVERIGVEKSRQVLKEADLILLVLNYSDELTSEDENIFK--AVEGMDVIVIVNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|291550925|emb|CBL27187.1| ribosome-associated GTPase EngA [Ruminococcus torques L2-14] Length = 442 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+++NR +G IV++ TTR + + + +F+DT G+ Sbjct: 180 IAIVGKPNVGKSSIINRLLGENRVIVSNIAGTTRDAIDTEIVHDGKEYIFIDTAGLRRKN 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + S ++ AD+V +V+D+ + + +R +I+++NK D Sbjct: 240 KIKEELERYSIIRTVSAVERADVVLMVIDATEGVTEQDAKIAGIAHERGKGVIIVVNKWD 299 Query: 142 CVK 144 ++ Sbjct: 300 AIE 302 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + V + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVDWLDRDFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + D M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SSDIILSQMREQAQIAIDTADVIIFITDVKQGL-VDSDSKVADMLRRSGKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + I +SA G D+L+ + + P Sbjct: 124 NFD-KYMADVYEFYN--LGIGDPVPISAASRLGLGDMLDAVTAHFP 166 >gi|122701555|emb|CAL88167.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKASQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILNALNL 168 >gi|122700799|emb|CAL87988.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|115525346|ref|YP_782257.1| GTP-binding protein EngA [Rhodopseudomonas palustris BisA53] gi|122295592|sp|Q07LA7|DER_RHOP5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115519293|gb|ABJ07277.1| small GTP-binding protein [Rhodopseudomonas palustris BisA53] Length = 460 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAK 84 A++G N GKSTL NR VG K+++V TR G + + +DT G+ AK Sbjct: 6 AIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTLIDTAGLDEGAK 65 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDCV 143 S + M + + + I+ AD + V D+ L N + A+R+++ +IL+ NK + Sbjct: 66 GSLTERMQQQTETAIELADALMFVFDARAGLTPN-DRAFADFARRANKPVILVANKSEG- 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + + + + +SA G G ++ + + +P Sbjct: 124 ---KAGEIGAMESYALGLGDPVQISAEHGEGLSELYDAFRALMP 164 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKST++N +G + + + + TTR + V K Q DT G+ Sbjct: 191 VAIVGRPNAGKSTMINHLLGEERLLTSPEAGTTRDSIAVSVDYKGRQFRIFDTAGLRRRS 250 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 ++ KL + + ++ A++V L++D+ E + I DL I + L++ +N Sbjct: 251 RIEEKLEKLSVADALRAVRFAEVVVLMLDAQTKFEEQDLRIADL---IEREGRALVIAVN 307 Query: 139 KIDCVK 144 K D V+ Sbjct: 308 KWDLVE 313 >gi|317452825|emb|CBL87848.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHELELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKATQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLSALNL 168 >gi|289551831|ref|YP_003472735.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus lugdunensis HKU09-01] gi|289181362|gb|ADC88607.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus lugdunensis HKU09-01] Length = 459 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++ + L L + I + +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSQADLILFVLNYNEPLTKEDRTLFEVI--ENEDVIVIVNK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D V+ + E E+ I+ + + K G D++ Sbjct: 337 TDLVQQLNIEEVQEMIGNKPLIQTSML----KQEGIDEL 371 >gi|284048574|ref|YP_003398913.1| ribosome-associated GTPase EngA [Acidaminococcus fermentans DSM 20731] gi|283952795|gb|ADB47598.1| ribosome-associated GTPase EngA [Acidaminococcus fermentans DSM 20731] Length = 443 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKSTL N F +++SIV TR + + + +DT GI Sbjct: 6 VAIVGRPNVGKSTLFNIFADSRISIVEDTPGVTRDRLYADAEWLDRKFTMVDTGGIEMQN 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 DS + + + ++ AD++ V D+ + + ++ K + + ++L +NK D Sbjct: 66 TDSIAVSIRQQAEVAVREADVILFVCDARTGITNDDMEVAKMLRQSRKPVVLAVNKADT- 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P++ E E N + I + +++SA+ D+L+ + P Sbjct: 125 -PKQEAEAYEFYN--LGIGEPYLISASNRLNLGDLLDAVVEKFP 165 Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 4/148 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G N GKS++ N +G SIV+ TTR + V + +F+DT G+ Sbjct: 180 VAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDVPVEKDGQTYLFIDTAGMRRKG 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K I + + +D+V LV+++ + + + +++++NK D Sbjct: 240 KIDEPIEKYSIIRTLRAVDRSDVVLLVLNAVEGITEQDKKIAGYAHEAGKGIVIVVNKWD 299 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSA 169 P + + E K + E FM A Sbjct: 300 LY-PNKTVMSTEEFTKQIRHELIFMPYA 326 >gi|257887716|ref|ZP_05667369.1| GTP-binding protein engA [Enterococcus faecium 1,141,733] gi|257823770|gb|EEV50702.1| GTP-binding protein engA [Enterococcus faecium 1,141,733] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I+ AD++ VV S RE + +++ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIEEADVIICVV-SGREGVTDADEMVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + E + + + + VS + G G D+L+ Sbjct: 123 -NPEMRNDIYEFYS--LGLGDPYPVSGSHGLGIGDILD 157 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + IV+ TTR +I VSE + + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRKRG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGVIIVVNKWD 297 Query: 142 CVKPE----RLLEQAEIANKLVFIEKT---FMVSATK 171 VK E R EQ EI ++ +++ F+ + TK Sbjct: 298 LVKKETNTMRDFEQ-EIRDEFRYLDYAPIVFVSAVTK 333 >gi|122702733|emb|CAL88556.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALDL 168 >gi|77361917|ref|YP_341492.1| tRNA modification GTPase TrmE [Pseudoalteromonas haloplanktis TAC125] gi|123589159|sp|Q3IK56|MNME_PSEHT RecName: Full=tRNA modification GTPase mnmE gi|76876828|emb|CAI88050.1| enzyme adding cmnm(5) to tRNA-s(2)U34, forming (with subsequent MnmG action) cmnm(5)s(2)U34-tRNA, an intermediate in mnm(5)s(2)U34-tRNA synthesis [Pseudoalteromonas haloplanktis TAC125] Length = 454 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 10/136 (7%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 V D ++ G V + G NAGKS+L+N G + +IVT TTR ++R + Sbjct: 203 VTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHID 262 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 + +DT G+ + D ++ I +W I AD V ++D + + H + E Sbjct: 263 GMPLHIIDTAGLRESPDLVEQIGIERAWDEINQADRVLFMLDGTDTIDTDPHKIWPEFMA 322 Query: 129 R---SSRLILILNKID 141 + + +I NK D Sbjct: 323 KLPVGLGVTVIRNKAD 338 >gi|309798864|ref|ZP_07693125.1| GTP-binding protein EngA [Streptococcus infantis SK1302] gi|308117513|gb|EFO54928.1| GTP-binding protein EngA [Streptococcus infantis SK1302] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|292806588|gb|ADE42424.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|261880032|ref|ZP_06006459.1| ribosome-associated GTPase EngA [Prevotella bergensis DSM 17361] gi|270333272|gb|EFA44058.1| ribosome-associated GTPase EngA [Prevotella bergensis DSM 17361] Length = 437 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+LVN F+G IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSLVNAFIGEDRHIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S I+++D+ L++D+ R ++ ++ + I + L++++NK D Sbjct: 239 VTEDLEFYSVMRSIRAIENSDVCILMIDATRGIEAQDMNIFQLIQRNRKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 17/173 (9%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTRTRHAIVSDIAGTTRDRQYGKCNWNGREFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILI 136 + D + + + AD++ +VD ++ + D +++A R SR +IL+ Sbjct: 62 VKSDDIFEDAIRQQVRIASDEADLILFLVD----VETGLTDWDEDVAMVLRCSRKPIILV 117 Query: 137 LNKIDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D +A I+ + + + +SA G G D+L+ + TLP Sbjct: 118 ANKVDNSG------EAYISAEFYKLGLGDPVSISAISGSGTGDLLDLVVKTLP 164 >gi|331702698|ref|YP_004399657.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929] gi|329130041|gb|AEB74594.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929] Length = 464 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 7/155 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +++G N GKS+L+N + +IVT TTR ++ V+ + +DT G Sbjct: 223 REGLATSIIGRPNVGKSSLLNNLLHEDKAIVTDVPGTTRDVLEEYVNVHGVPLKLVDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S I AD+V LV+++ L LL A + + I+ILNK Sbjct: 283 IRDTTDKVEKIGVDRSRKAINSADLVLLVLNASEPLTDEDKKLLS--ATQDKQRIIILNK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 D P + ++Q +I + L + SA K G Sbjct: 341 TDL--PTK-IDQDQIKS-LADGQNVISTSAIKADG 371 >gi|283956362|ref|ZP_06373842.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 1336] gi|283792082|gb|EFC30871.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 1336] Length = 442 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%) Query: 20 SRSGCV-----ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 SR G + A+VG N GKS+L+N + + +IV+ TTR + + Sbjct: 207 SRKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 +DT GI +KD+ ++ + LS +++ ADI+ V D+ R + +A ++ Sbjct: 267 IDTAGIRESKDAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIF 326 Query: 135 LILNKID 141 ILNK D Sbjct: 327 WILNKSD 333 >gi|122701327|emb|CAL88053.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122700895|emb|CAL88036.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSALNL 168 >gi|285019932|ref|YP_003377643.1| tRNA modification GTPase [Xanthomonas albilineans GPE PC73] gi|283475150|emb|CBA17649.1| putative trna modification gtpase protein [Xanthomonas albilineans] Length = 447 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G+ +IVT TTR + V ++ +DT G+ + D+ Sbjct: 222 LVGPPNAGKSSLLNALAGSARAIVTDIAGTTRDTLHETVCVDGLELTLVDTAGLRDGGDA 281 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + +R + ++ AD+ +V+D+ R++ V + + IA RL I NK D Sbjct: 282 IEREGMRRARLELQRADLALVVLDA-RDVAVGRAAVAEAIADVPQRL-WIHNKCD 334 >gi|170729308|ref|YP_001774741.1| GTP-binding protein [Xylella fastidiosa M12] gi|167964101|gb|ACA11111.1| GTP-binding protein [Xylella fastidiosa M12] Length = 450 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TN+GKSTL N GA T VR IV S + DT G + Sbjct: 201 IALVGYTNSGKSTLFNALTGASAYTADQLFATLDPKVRRIVLPGSSAM-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSH---RELKVN-IHDLLKEIAKRSSRLILILN 138 H+L+ R + S + AD++ V+D+ RE +++ + ++L+ I +L+ N Sbjct: 258 HLPHELVAAFRSTLSEAREADLLLHVIDAADPLREERIDQVDEVLQAIGAGELPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 KIDC++ + + A+ + +SA GHG + Sbjct: 318 KIDCIEGAEVRQDAQDGIPDQARRERVWLSARHGHGVE 355 >gi|122702853|emb|CAL88616.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQISDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122702427|emb|CAL88404.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAILNALNL 168 >gi|122702185|emb|CAL88283.1| GTPase [Helicobacter pylori] gi|122702721|emb|CAL88550.1| GTPase [Helicobacter pylori] gi|292806450|gb|ADE42355.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806462|gb|ADE42361.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806468|gb|ADE42364.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806616|gb|ADE42438.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|91225135|ref|ZP_01260357.1| GTP-binding protein EngA [Vibrio alginolyticus 12G01] gi|269965174|ref|ZP_06179308.1| GTP-binding protein [Vibrio alginolyticus 40B] gi|91190078|gb|EAS76349.1| GTP-binding protein EngA [Vibrio alginolyticus 12G01] gi|269830160|gb|EEZ84387.1| GTP-binding protein [Vibrio alginolyticus 40B] Length = 498 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 7/163 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ M S + I AD+V +VD L + + + K +L++NKID Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVNKIDG 123 Query: 143 VKPERLLEQAEIANK-LVFIEKTFMVSATKGHGCDDVLNYLCS 184 + + A A+ + ++ + ++A G G +L S Sbjct: 124 IDAD-----AACADFWQLGVDDMYQIAAAHGRGVTALLERALS 161 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 19/193 (9%) Query: 2 EMGEITFFNEHKDFVQDNSRSGC-------------VALVGATNAGKSTLVNRFVGAKVS 48 E+ ++T F + + V+D + +A++G N GKSTL NR +G + Sbjct: 176 EIEDLTGFEDEEPLVEDYTEEDAEAEFKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERV 235 Query: 49 IVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIV 105 +V TTR + + + V +DT G+ ++ K + + ++ A++V Sbjct: 236 VVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVV 295 Query: 106 CLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE-- 162 LV+D+ + LL +++ +NK D + + + + E+ +L F++ Sbjct: 296 LLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDSDVKESVKKELDRRLGFVDFA 355 Query: 163 KTFMVSATKGHGC 175 + +SA G G Sbjct: 356 RIHFISALHGTGV 368 >gi|313897444|ref|ZP_07830987.1| ribosome biogenesis GTPase Der [Clostridium sp. HGF2] gi|312957814|gb|EFR39439.1| ribosome biogenesis GTPase Der [Clostridium sp. HGF2] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 6/167 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G VA+VG N GKST+ NR +G + SIV TR + G + +DT GI Sbjct: 3 NGIVAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTREFRVIDTGGIQ 62 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI- 140 A + + I AD + VV L + + + + K +IL +NK+ Sbjct: 63 LANQDFQTEINMQVEIAIDEADCIVFVVSGKDGLTHDDEYVARLLHKTKKPVILAVNKVD 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + + + E + + VS G G DVL+ + LP Sbjct: 123 DFAQNDAIYEFYSLG-----LGDPLAVSGAHGIGIGDVLDAVIHALP 164 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+LVN + + IV++ TTR + + + V +DT GI Sbjct: 179 VIGRPNVGKSSLVNAILNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKRGKV 238 Query: 87 Y---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 Y K + + S I+ +D+V +V+D + ++ + + ++++ NK D V Sbjct: 239 YENIEKYSVLRAMSAIERSDVVLVVIDGEKGIRDQDKHVAGYAHEAGKGVVIVYNKWDAV 298 Query: 144 KPE 146 + + Sbjct: 299 EKD 301 >gi|262371178|ref|ZP_06064499.1| tRNA modification GTPase mnmE [Acinetobacter johnsonii SH046] gi|262313908|gb|EEY94954.1| tRNA modification GTPase mnmE [Acinetobacter johnsonii SH046] Length = 454 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 12/139 (8%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ ++ Sbjct: 206 VQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGIERAIVTDIAGTTRDVLHEKITLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D LK+ + Sbjct: 266 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLSQGEDPLKLAQEYFAEH 325 Query: 126 IAKRSSRLILILNKIDCVK 144 I + RL+LI NK D ++ Sbjct: 326 IEPK--RLMLIGNKCDLME 342 >gi|255263117|ref|ZP_05342459.1| tRNA modification GTPase TrmE [Thalassiobium sp. R2A62] gi|255105452|gb|EET48126.1| tRNA modification GTPase TrmE [Thalassiobium sp. R2A62] Length = 428 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VGA N GKSTL+N G +I + TTR I+ + + FLDT G+ +A Sbjct: 216 VAIVGAPNVGKSTLLNAIAGRDAAITSEYAGTTRDIIEVKIDLGGLPVTFLDTAGLHDAD 275 Query: 85 DSYHKLMIRLSWSTIKHADI-VCLVVDS 111 + ++ IR + AD+ V L +D Sbjct: 276 SAVEQIGIRRALDRAAQADLRVVLSIDG 303 >gi|237712743|ref|ZP_04543224.1| GTP-binding protein EngA [Bacteroides sp. D1] gi|262408120|ref|ZP_06084667.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_22] gi|293369492|ref|ZP_06616071.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CMC 3f] gi|294644223|ref|ZP_06721993.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CC 2a] gi|294808599|ref|ZP_06767339.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens SD CC 1b] gi|298480163|ref|ZP_06998361.1| ribosome-associated GTPase EngA [Bacteroides sp. D22] gi|229447220|gb|EEO53011.1| GTP-binding protein EngA [Bacteroides sp. D1] gi|262353672|gb|EEZ02765.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_22] gi|292635377|gb|EFF53890.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CMC 3f] gi|292640433|gb|EFF58681.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CC 2a] gi|294444198|gb|EFG12925.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens SD CC 1b] gi|295088054|emb|CBK69577.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens XB1A] gi|298273444|gb|EFI15007.1| ribosome-associated GTPase EngA [Bacteroides sp. D22] Length = 437 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 18/145 (12%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G + +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S I+ +D+ L++D+ R ++ ++ I K L++++NK Sbjct: 239 VNEDLEYYSVI--RSIRAIEGSDVCILMLDATRGVESQDLNIFSLIQKNQKGLVVVINKW 296 Query: 141 DCVKPERLLEQAEIANKLVFIEKTF 165 D V+ +K V ++KTF Sbjct: 297 DLVE-----------DKSVKVQKTF 310 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 13/170 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 N+ D + + + + + AD++ VVD + DL ++A + +S +I++ Sbjct: 62 VNSDDVFEEEIRKQVLLAVDEADVILFVVDVMN----GVTDLDMQVAAILRRANSPVIMV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D L A KL + + VSA G G D+++ + S Sbjct: 118 ANKTDN---HDLQYNAPEFYKL-GLGDPYCVSAMTGSGTGDLMDLIVSNF 163 >gi|122700631|emb|CAL87904.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDS-YHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ K + L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|296392434|ref|ZP_06881909.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAb1] Length = 426 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 189 TVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 248 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D K+ + + I AD V LVVD+ + L E + ++ LI NK Sbjct: 249 EDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKA 308 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D LE E A+ V T +SA G G + + +L Sbjct: 309 DLSTESIGLE--ESADGHV----TITLSARTGAGLELLREHL 344 >gi|152980964|ref|YP_001353811.1| HflX GTP-binding protein [Janthinobacterium sp. Marseille] gi|151281041|gb|ABR89451.1| HflX GTP-binding protein [Janthinobacterium sp. Marseille] Length = 372 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 13/159 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N +V T + R I + +V DT G Sbjct: 191 SVSLVGYTNAGKSTLFNALAKTRVLAADQLFATLDTTSRRIYLGEAGNVVISDTVGFI-- 248 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILIL 137 ++ H+L+ R + HAD++ VVD +++ ++ +L+EI IL+ Sbjct: 249 RELPHQLVAAFRATLEETIHADLLLHVVDGASPVRMEQIEQVNMVLREIGADHIPQILVW 308 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID E LE+ E I + F +SA G G D Sbjct: 309 NKIDAAGLEPALERDEYDK----IRRVF-ISAQTGSGLD 342 >gi|122702445|emb|CAL88413.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEILDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALVDAILNALNL 168 >gi|50086618|ref|YP_048128.1| tRNA modification GTPase TrmE [Acinetobacter sp. ADP1] gi|81392037|sp|Q6F6L1|MNME_ACIAD RecName: Full=tRNA modification GTPase mnmE gi|49532592|emb|CAG70306.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Acinetobacter sp. ADP1] Length = 462 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 12/138 (8%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 214 VQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGNERAIVTDIAGTTRDVLHERISLN 273 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D L + + Sbjct: 274 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLSEGADPLALAQEYFAEH 333 Query: 126 IAKRSSRLILILNKIDCV 143 + R RLILI NK D + Sbjct: 334 LEPR--RLILIGNKCDLM 349 >gi|88858476|ref|ZP_01133118.1| GTP-binding protein EngA [Pseudoalteromonas tunicata D2] gi|88820093|gb|EAR29906.1| GTP-binding protein EngA [Pseudoalteromonas tunicata D2] Length = 492 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 8/159 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ ++V TR G E + + +DT GI + Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKYDEYEFIVVDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILNKID 141 ++ M S I+ AD+V +VD+ + + + K +++ + L+ NKID Sbjct: 64 EEGIELEMAEQSLLAIEEADVVMFLVDARAGMTAADQAIANHLRKLNTQKSIFLVANKID 123 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + + E ++A + + + ++A+ G G +L Sbjct: 124 GLDADSSCAEFYQLA-----LGEVYQIAASHGRGVTQLL 157 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + IV TTR + ++ + + V +DT G+ K Sbjct: 207 LAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNDQEYVLIDTAGVRKRK 266 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ A++V LVVD+ + LL L++ +NK D Sbjct: 267 KVSDVAEKFSVIKTLKAIEDANVVLLVVDAREGISDQDLSLLGFALNSGRSLVIAVNKWD 326 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + + + E+ +L FI+ + +SA G G Sbjct: 327 GLDEYVKTRIKTELDRRLGFIDFARIHFISALHGTGV 363 >gi|322388795|ref|ZP_08062392.1| ribosome-associated GTPase EngA [Streptococcus infantis ATCC 700779] gi|321140414|gb|EFX35922.1| ribosome-associated GTPase EngA [Streptococcus infantis ATCC 700779] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQTEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|315634680|ref|ZP_07889964.1| ribosome-associated GTPase EngA [Aggregatibacter segnis ATCC 33393] gi|315476628|gb|EFU67376.1| ribosome-associated GTPase EngA [Aggregatibacter segnis ATCC 33393] Length = 512 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 +A+VG N GKSTL NR +G +V TTR + I E++ Q +DT G+ Sbjct: 226 IAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIY-IPMERDGQNYTLIDTAGVRKR 284 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 285 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNSGRSLVIVVNKW 344 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + E + ++E+ +L FI+ + +SA G G ++ Y C+T Sbjct: 345 DGLNQEVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFESVKEAYECAT 397 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 23/183 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHLAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I+ ADIV +VD+ L + I + L++ +++ +++ NK+ Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQ--RQNKTTVVVANKV 122 Query: 141 DCVKPER------LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D + + L EIA ++A++G G ++ + + PLA + Sbjct: 123 DGIDADSHCAEFYQLGLGEIA----------QIAASQGRGIASLMEQVLT--PLAEQMAE 170 Query: 195 ADQ 197 A++ Sbjct: 171 AEK 173 >gi|313679731|ref|YP_004057470.1| GTP-binding protein hflx [Oceanithermus profundus DSM 14977] gi|313152446|gb|ADR36297.1| GTP-binding protein HflX [Oceanithermus profundus DSM 14977] Length = 554 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 23/186 (12%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +R VA+VG TNAGK+TL+ + T R + R +++F DT Sbjct: 372 RNRVPVVAIVGYTNAGKTTLLRALTRKGDAGENKLFATLRPLTRRGYLPGYGEVLFTDTV 431 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH----DLLKEIAKRSSRLI 134 G R + + AD+V VVD+ + + H D L E+ + RL+ Sbjct: 432 GFIRDMPPALVTAFRATLEELFEADLVLHVVDATADGALEHHRVVEDRLVEMGLEAPRLV 491 Query: 135 LILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC-----STL 186 ++NKID P RL EQ + VSA +G G +D+ + + S L Sbjct: 492 -VVNKIDRADPFDRMRLEEQLD----------GVAVSALEGRGLEDLASRIVRVLIGSGL 540 Query: 187 PLAPWV 192 P PW Sbjct: 541 PAQPWA 546 >gi|295398578|ref|ZP_06808610.1| ribosome-associated GTPase EngA [Aerococcus viridans ATCC 11563] gi|294973179|gb|EFG48974.1| ribosome-associated GTPase EngA [Aerococcus viridans ATCC 11563] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A+VG N GKST+ NR VG ++SIV + TR + Q+ +DT GI FN Sbjct: 5 TIAIVGRPNVGKSTIFNRVVGDRISIVQDEPGVTRDRIYAQGEWLGKQLNVIDTGGIEFN 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D ++ ++ + ++ AD++ ++ + + + + K ++L +NK+D Sbjct: 65 DQDFMTQIRLQAEIA-MEEADVIIMMTNVREGVTKTDSQIASMLRKTDKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE ++AEI + + + +S + G G D+L + P Sbjct: 123 -NPE---QRAEIYDFYSLGLGDPYPISGSHGLGIGDILEEVFHLAP 164 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 11/128 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 AL+G N GKS+LVN +G IV++ TTR + + +DT GI Sbjct: 179 ALIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAIDTSFEDDGQVYKIIDTAGIRKRGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILN 138 Y K + + I+ A VCLVV + E I D K IA + +I+++N Sbjct: 239 VYEATEKYSVMRAMRAIERAQ-VCLVVLNAEE---GIRDQDKTIAGYAHEAGRGIIIVVN 294 Query: 139 KIDCVKPE 146 K D ++ + Sbjct: 295 KWDTLEKD 302 >gi|122702151|emb|CAL88266.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|122700909|emb|CAL88043.1| GTPase [Helicobacter pylori] gi|122702283|emb|CAL88332.1| GTPase [Helicobacter pylori] gi|122702285|emb|CAL88333.1| GTPase [Helicobacter pylori] gi|122702299|emb|CAL88340.1| GTPase [Helicobacter pylori] gi|122702325|emb|CAL88353.1| GTPase [Helicobacter pylori] gi|122702765|emb|CAL88572.1| GTPase [Helicobacter pylori] gi|292806472|gb|ADE42366.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806578|gb|ADE42419.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806702|gb|ADE42481.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|71275937|ref|ZP_00652220.1| Small GTP-binding protein domain [Xylella fastidiosa Dixon] gi|71900023|ref|ZP_00682168.1| Small GTP-binding protein domain [Xylella fastidiosa Ann-1] gi|71163314|gb|EAO13033.1| Small GTP-binding protein domain [Xylella fastidiosa Dixon] gi|71730233|gb|EAO32319.1| Small GTP-binding protein domain [Xylella fastidiosa Ann-1] Length = 450 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TN+GKSTL N GA T VR IV S + DT G + Sbjct: 201 IALVGYTNSGKSTLFNALTGASAYTADQLFATLDPKVRRIVLPGSSAM-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSH---RELKVN-IHDLLKEIAKRSSRLILILN 138 H+L+ R + S + AD++ V+D+ RE +++ + ++L+ I +L+ N Sbjct: 258 HLPHELVAAFRSTLSEAREADLLLHVIDAADPLREERIDQVDEVLQAIGAGELPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 KIDC++ + + A+ + +SA GHG + Sbjct: 318 KIDCIEGAEVRQDAQDGIPDQARRERVWLSARHGHGVE 355 >gi|323356705|ref|YP_004223101.1| GTPase [Microbacterium testaceum StLB037] gi|323273076|dbj|BAJ73221.1| predicted GTPase [Microbacterium testaceum StLB037] Length = 507 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS LVNR +G + ++V TR V + + +DT G Sbjct: 68 VVAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVTYKAEWLDRRFSLVDTGGWEPD 127 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + I AD+V VVD+ ++K + K + LI NK+D Sbjct: 128 AKGIDRSVAAQAEVAIDLADVVLFVVDATVGATSTDEHVVKLLRKSKKPVFLIANKVDDA 187 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E E + N + + + VSA G G D+L+ L LP Sbjct: 188 RQEP--EATALWN--LGLGEPHPVSAIHGRGVADLLDELMKVLP 227 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 9/123 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA++G N GKS+L+N+ G + +V TTR V +V +DT GI Sbjct: 243 VAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEVVELGGKLWTLVDTAGIRRRV 302 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L R S + ++ +++ +V+D + + V +++ + + L+L N Sbjct: 303 HLSQGADFYASL--RTS-TALEKSEVAVVVLDVSQPISVQDLNIIDLVLESGRALVLAFN 359 Query: 139 KID 141 K D Sbjct: 360 KWD 362 >gi|308273513|emb|CBX30115.1| tRNA modification GTPase mnmE [uncultured Desulfobacterium sp.] Length = 460 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 3/131 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G N GKS+L+N + + SIVT TTR I+ + V DT G Sbjct: 221 REGLKVVIAGRPNVGKSSLMNVLLKKERSIVTSIPGTTRDIIDETIIISGIPAVIFDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N D ++ I+ + I ++DI+ ++D + LL EI K LI++LNK Sbjct: 281 FHNTVDPVEEIGIQKALEIINNSDIILFMLDVINPFTEDDRTLL-EIVK-DKELIVVLNK 338 Query: 140 IDCVKPERLLE 150 ID + L+E Sbjct: 339 IDLLNENSLIE 349 >gi|122702263|emb|CAL88322.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|115605759|gb|ABJ15861.1| YphC [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 17/170 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ AK Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--AK 67 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILN 138 D+ I+ L+ + +D++ VVD S +LK L +E+ K + L++N Sbjct: 68 DALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVIN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID K + E+A A + K+F +S + G +++ + S L L Sbjct: 123 KIDNDKEK---ERA-CAFSSFGMPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|118474391|ref|YP_892485.1| GTP-binding protein EngA [Campylobacter fetus subsp. fetus 82-40] gi|166224321|sp|A0RQK2|DER_CAMFF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118413617|gb|ABK82037.1| GTP-binding protein EngA [Campylobacter fetus subsp. fetus 82-40] Length = 463 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + LVG N GKS+L NR +++I + TTR + + + + +D+ G+ ++ Sbjct: 4 IILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDSN 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + I + + K+ADI+ +VD E++ + + L++NK+D K Sbjct: 64 ELFKNVKIN-TLNEAKNADIIVFMVDGKNFPDEIDKRFFYELSNLNKPIALVVNKVDSKK 122 Query: 145 P-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ER E E K + F +S + G D++ +++ +P Sbjct: 123 DEERSWEFNEFGAKYI-----FNLSVSHNLGTDELRDWIYKLIP 161 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 6/171 (3%) Query: 10 NEHKDF----VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 NEH + V +++ + ++G N GKS+L+N V S+V+ TT V Sbjct: 181 NEHGEMGLPSVDYETKNIKIGIIGRVNVGKSSLLNALVKEDRSVVSKIAGTTIDPVNESY 240 Query: 66 SEKESQIVFLDTPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 ++ F+DT GI + +L + + ++ ADI LV+D+ L + Sbjct: 241 VYEDRVFEFVDTAGIRKRGKIEGIERLALHRTEKILEEADIALLVLDASEPLTELDERIA 300 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 AK LI++LNK D E E+ +K F+ ++S + G Sbjct: 301 GLGAKFELGLIIVLNKWDKDHGEFDKVVYELRDKFKFLAYAPIISVSALGG 351 >gi|58040398|ref|YP_192362.1| GTP-binding protein EngA [Gluconobacter oxydans 621H] gi|58002812|gb|AAW61706.1| GTP-binding protein [Gluconobacter oxydans 621H] Length = 463 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 5/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 V + G N GKSTL NR VG + +IV+ TR G + ++ +DT G+ Sbjct: 12 VVVIAGRPNVGKSTLFNRLVGRRQAIVSDMPGVTRDRKEGEALLRGRRVRLIDTAGLEEA 71 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A D+ + M S S + AD+V +D+ + + +++ ++LI NK + Sbjct: 72 APDTLYGRMRASSESAVAMADLVLFCIDARSGITPADAHFASWLRRQNRPVLLIANKAEG 131 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + A + + + +SA G G D++ + LP A Sbjct: 132 ----QAGTNAALEAYSLGLGTPLALSAEHGEGIADLMGEIAERLPPA 174 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 +A++G NAGKSTL+N +G + I + TR + + ++ I +DT G+ A Sbjct: 199 LAIIGRPNAGKSTLLNCLLGEERMITGPEAGLTRDSITVELHDEHGPIQLVDTAGMRKRA 258 Query: 84 KDSYH--KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRL-ILILNK 139 + H K+ + S +K A++V LV+D+ L V+ DL + + +R R ++ LNK Sbjct: 259 RVEQHLEKMSVSASIEALKMAEVVVLVIDA--TLGVHEQDLQIGRLIEREGRACVIALNK 316 Query: 140 IDCVK 144 D V+ Sbjct: 317 WDAVE 321 >gi|15618389|ref|NP_224674.1| GTP binding protein [Chlamydophila pneumoniae CWL029] gi|15836009|ref|NP_300533.1| GTP binding protein [Chlamydophila pneumoniae J138] gi|4376763|gb|AAD18618.1| GTP Binding Protein [Chlamydophila pneumoniae CWL029] gi|8978848|dbj|BAA98684.1| GTP binding protein [Chlamydophila pneumoniae J138] Length = 472 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 13/171 (7%) Query: 20 SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 SR G AL+G TN+GKSTL+N A + T R V ++ DT Sbjct: 225 SRRGIPTFALIGYTNSGKSTLLNLLTAADTYVEDKLFATLDPKTRKCVLPGGRHVLLTDT 284 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRL 133 G + + H D++ VVD+ L + +DL +E+ R+ Sbjct: 285 VGFIRKLPHTLVAAFKSTLEAAFHEDVLLHVVDASHPLALEHVQTTYDLFQELKIEKPRI 344 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLC 183 I +LNK+D L Q I KL + ++SA G G ++L+ + Sbjct: 345 ITVLNKVDR------LPQGSIPMKLRLLSPLPVLISAKTGEGIQNLLSLMT 389 >gi|148255461|ref|YP_001240046.1| putative GTP-binding protein (hflX) [Bradyrhizobium sp. BTAi1] gi|146407634|gb|ABQ36140.1| GTP-binding protein HflX [Bradyrhizobium sp. BTAi1] Length = 459 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 7/173 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R I + + DT G + Sbjct: 227 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRAITLPHGGKAMLSDTVGFISN 286 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA---KRSSRLILI 136 + R + + AD++ V D SH + + HD +L ++ + + +I + Sbjct: 287 LPTQLVAAFRATLEEVLEADVILHVRDMSHEDAEAQQHDVELVLGQLGIDPEATDTIIEV 346 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 NKID + A IA++ +VSA G G D +L + L A Sbjct: 347 WNKIDRLDEAARENLANIASRRPPERPCLLVSAHTGEGVDALLQAIEDRLAAA 399 >gi|331265908|ref|YP_004325538.1| phosphoglycerate dehydrogenase, GTP-binding protein [Streptococcus oralis Uo5] gi|326682580|emb|CBZ00197.1| phosphoglycerate dehydrogenase, GTP-binding protein [Streptococcus oralis Uo5] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|313669190|ref|YP_004049474.1| thiophene and furan oxidation protein [Neisseria lactamica ST-640] gi|313006652|emb|CBN88118.1| probable thiophene and furan oxidation protein [Neisseria lactamica 020-06] Length = 448 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|313671977|ref|YP_004050088.1| tRNA modification gtpase trme [Calditerrivibrio nitroreducens DSM 19672] gi|312938733|gb|ADR17925.1| tRNA modification GTPase TrmE [Calditerrivibrio nitroreducens DSM 19672] Length = 437 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N GKS+L+N + + SIV+ TTR + + I +DT G+ ++ Sbjct: 212 AVVIAGKPNVGKSSLLNFLLSQERSIVSDIPGTTRDYILEYANLGGIPIKLIDTAGVRSS 271 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D+ KL I S I+HAD+V +++D+ + + L +I K +RLI + NK+D V Sbjct: 272 SDTIEKLGIDRSLEMIQHADLVIVLLDASSFDDEDRYIL--DITKDKTRLIFV-NKVDLV 328 >gi|269469285|gb|EEZ80798.1| GTPase [uncultured SUP05 cluster bacterium] Length = 325 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 5/130 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKS+L+N +IVT TTR ++R + + +DT G+ ++ Sbjct: 97 VAIAGKPNAGKSSLLNALTQRSSAIVTDIAGTTRDVLRETIHIDGMPLNIIDTAGLHESQ 156 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV- 143 D K I+ + I AD+V ++ D+ + + L +++ + +L++I NKID Sbjct: 157 DVVEKEGIKRAIDVIAQADVVLMMYDAQDQ-SPDFSLLPEKLDLK--KLLVIKNKIDLTN 213 Query: 144 -KPERLLEQA 152 +P R +EQ Sbjct: 214 ERPGRCIEQG 223 >gi|239946722|ref|ZP_04698475.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes scapularis] gi|239920998|gb|EER21022.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes scapularis] Length = 445 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 12/148 (8%) Query: 10 NEHKDFVQDNSR-----SGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 NE +++ DN R SG +A++G N GKS+L+N + ++IV++ TTR I+ G Sbjct: 197 NEISNYLNDNRRGELLNSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEG 256 Query: 64 IVSEKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-ELKVNIHD 121 + I+ DT GI + D + I+ + ++ K ADI ++ D+ + + +N D Sbjct: 257 HLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKIIMFDAEKLDSSIN-ED 315 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLL 149 ++ I + + I I+NKID ++ ++ Sbjct: 316 IINLIDENT---ITIINKIDLIEASKIF 340 >gi|257065788|ref|YP_003152044.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548] gi|256797668|gb|ACV28323.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548] Length = 382 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 11/126 (8%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDT 77 NS + + G TNAGKST +N G +IV+ TT VR + + ++F+DT Sbjct: 5 NSERVHIGIFGKTNAGKSTFLNYMTGTDTAIVSEVAGTTTDPVRKAMEITDFGPVLFIDT 64 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIV--CLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 G F+ K + I S + I DI CL +D E +LKEI KR+ +I Sbjct: 65 AGFFD-KSTLGSKRIAKSLAIIDKCDIFIYCLSLDEDFE-------ILKEIKKRNKPIIY 116 Query: 136 ILNKID 141 + K D Sbjct: 117 VAGKQD 122 >gi|167948161|ref|ZP_02535235.1| GTP-binding protein Era [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 74 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 37/60 (61%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+ G A+ G N GKSTL+NR +G K++I +HK QTTR + GI + ++ Q+ P Sbjct: 5 NNHCGYAAIAGRPNVGKSTLLNRIIGMKLAITSHKAQTTRHSILGIKTLEQGQVHLCGYP 64 >gi|149605447|ref|XP_001518750.1| PREDICTED: similar to mitochondrial GTP-binding protein 1 [Ornithorhynchus anatinus] Length = 494 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V + G TNAGKS+L+N +IV+ TTR +V ++ ++ DT G Sbjct: 247 RSGVQVVIAGPTNAGKSSLLNLLCQKPTAIVSPVAGTTRDVVESALNIGGFPVLLSDTAG 306 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL---ILI 136 + +D + +R + + ADIV V+D+ + H L+ + + +L+ Sbjct: 307 LRATQDPVEREGVRRAQDRLTQADIVLAVLDATDIASDSSHLFLETMRGQGDPTRPCLLV 366 Query: 137 LNKIDCVKP 145 LNK D + P Sbjct: 367 LNKADLLTP 375 >gi|122702237|emb|CAL88309.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VV+ S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVNGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|312869092|ref|ZP_07729266.1| ribosome biogenesis GTPase Der [Lactobacillus oris PB013-T2-3] gi|311095338|gb|EFQ53608.1| ribosome biogenesis GTPase Der [Lactobacillus oris PB013-T2-3] Length = 437 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 12/168 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHGEWLGKNFNMIDTGGIELS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + + I AD++ LVVD ++ + D +++A+ RS++ ++L +NK Sbjct: 65 DQPLLTQIRQQAEIAIDEADVIVLVVD----VESGVTDADEQVARILYRSNKPVVLAVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D PER + + + + + + + VS+ G G D+L+ + P Sbjct: 121 VD--NPERRNDIYDFYS--LGLGEPYPVSSVHGVGLGDLLDAVIHNFP 164 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 12/127 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+LVN +G IV++ TTR + K+ Q +DT GI Sbjct: 178 SLIGRPNVGKSSLVNGILGENRVIVSNMAGTTRDAINTRFVAKDGQEFTMIDTAGIRKQG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILIL 137 Y + + + I +D+V +V+++ I ++ K IA + +I+++ Sbjct: 238 KIYENTERYALMRAMRAIDGSDVVLVVLNAEE----GIREIDKHIAGYAHEAGCGVIIVV 293 Query: 138 NKIDCVK 144 NK D ++ Sbjct: 294 NKWDTLE 300 >gi|292806440|gb|ADE42350.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|269303355|gb|ACZ33455.1| putative phage virion morphogenesis protein/GTP binding protein [Chlamydophila pneumoniae LPCoLN] Length = 472 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 13/171 (7%) Query: 20 SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 SR G AL+G TN+GKSTL+N A + T R V ++ DT Sbjct: 225 SRRGIPTFALIGYTNSGKSTLLNLLTAADTYVEDKLFATLDPKTRKCVLPGGRHVLLTDT 284 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRL 133 G + + H D++ VVD+ L + +DL +E+ R+ Sbjct: 285 VGFIRKLPHTLVAAFKSTLEAAFHEDVLLHVVDASHPLALEHVQTTYDLFQELKIEKPRI 344 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLC 183 I +LNK+D L Q I KL + ++SA G G ++L+ + Sbjct: 345 ITVLNKVDR------LPQGSIPMKLRLLSPLPVLISAKTGEGIQNLLSLMT 389 >gi|206901733|ref|YP_002250881.1| ribosome-associated GTPase EngA [Dictyoglomus thermophilum H-6-12] gi|206740836|gb|ACI19894.1| ribosome-associated GTPase EngA [Dictyoglomus thermophilum H-6-12] Length = 380 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A VG N+GKS+L+N +G SIV+ TTR V + + + +DTPG+ Sbjct: 125 AFVGRPNSGKSSLLNALIGKDRSIVSEIPGTTRDAVDLVWEFNGKKYIIVDTPGLRRPAR 184 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ +L +R + TI+ D+ +V+D ++ +L I + +++ NK D Sbjct: 185 VEEGLEELSVRKTLQTIRKIDVAVMVIDLSVGVREQEKRILHYIEDKGKSCLIVFNKTDL 244 >gi|224532071|ref|ZP_03672703.1| tRNA modification GTPase TrmE [Borrelia valaisiana VS116] gi|224511536|gb|EEF81942.1| tRNA modification GTPase TrmE [Borrelia valaisiana VS116] Length = 464 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 5/119 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 + L G+ NAGKS+L N F+ SIV+ TTR + S + I+F DT G+ + Sbjct: 225 LVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLRD 282 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A + +L I S S IK A +V V+D + L + + K +S+++ +LNKID Sbjct: 283 ADNFVERLGIEKSNSLIKEASLVIYVIDVNSNLTRDDISFIDS-NKSNSKILFVLNKID 340 >gi|122701675|emb|CAL88227.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|33241830|ref|NP_876771.1| GTP binding protein hflX [Chlamydophila pneumoniae TW-183] gi|33236339|gb|AAP98428.1| GTP binding protein hflX [Chlamydophila pneumoniae TW-183] Length = 472 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 13/171 (7%) Query: 20 SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 SR G AL+G TN+GKSTL+N A + T R V ++ DT Sbjct: 225 SRRGIPTFALIGYTNSGKSTLLNLLTAADTYVEDKLFATLDPKTRKCVLPGGRHVLLTDT 284 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRL 133 G + + H D++ VVD+ L + +DL +E+ R+ Sbjct: 285 VGFIRKLPHTLVAAFKSTLEAAFHEDVLLHVVDASHPLALEHVQTTYDLFQELKIEKPRI 344 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLC 183 I +LNK+D L Q I KL + ++SA G G ++L+ + Sbjct: 345 ITVLNKVDR------LPQGSIPMKLRLLSPLPVLISAKTGEGIQNLLSLMT 389 >gi|159481624|ref|XP_001698878.1| hypothetical protein CHLREDRAFT_121098 [Chlamydomonas reinhardtii] gi|158273370|gb|EDO99160.1| predicted protein [Chlamydomonas reinhardtii] Length = 465 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 13/179 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N + + +IVT TTR ++ +S + LDT GI ++ Sbjct: 227 VAIVGRPNVGKSSLLNAWTNSDRAIVTEIAGTTRDVLEAQLSVGGVPVTLLDTAGIRDST 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ + S + AD+V +VVDS ++ + + L L+ NK D Sbjct: 287 DVVERIGVERSQAAAAAADVVIMVVDSAEGWTDADTEIYRSLWGDGPAL-LVANKDD--- 342 Query: 145 PERLLEQAEIANKLVFIEKTFMV----SATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 L A A +LV + TF SA++ G + L+ L AP + ++ +S Sbjct: 343 ----LRAAGAAIQLVERQSTFSATVRTSASQRKGLES-LDAALLDLAGAPQLAASGGVS 396 >gi|122701477|emb|CAL88128.1| GTPase [Helicobacter pylori] gi|122702565|emb|CAL88472.1| GTPase [Helicobacter pylori] gi|122702569|emb|CAL88474.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALNL 168 >gi|297623927|ref|YP_003705361.1| ribosome-associated GTPase EngA [Truepera radiovictrix DSM 17093] gi|297165107|gb|ADI14818.1| ribosome-associated GTPase EngA [Truepera radiovictrix DSM 17093] Length = 439 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 17/165 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N VG + IV TTR V V +DT GI Sbjct: 177 VAIIGRPNVGKSSLLNALVGDERVIVADVPGTTRDSVDVRFDFGGRPFVLIDTAGIRRKP 236 Query: 85 DS----YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILN 138 D Y KL S + +D+ LVVD ++ H+L L +A ++ + ++L +N Sbjct: 237 DGDVEYYSKLR---SEEALMRSDVAVLVVDP---FELGDHELRLANLALQAGKPVVLTIN 290 Query: 139 KIDCVKPERLLEQ----AEIANKLVFIEKTFMVSATKGHGCDDVL 179 K D V E L E A++ L F K + SA +G D+L Sbjct: 291 KWDLVPDEALREFEKNIAQVLGHLDFAPKVY-TSALNAYGLHDLL 334 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VA+VG N GKS+L NR VG + +IV TR + V + + LDT G++ + Sbjct: 4 VAIVGRPNVGKSSLFNRLVGRREAIVADMPGVTRDVKEARVEDDLGRSFTLLDTGGLW-S 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + + + R + + A +V VD L +++ + +L+ K+D Sbjct: 63 NDEWQEPIKRRIEAALADAALVLFCVDGRAPLSAADYEVAAWLRNVGKPTLLLATKLDDP 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E E E+ L F E +SA G ++L+ + LP Sbjct: 123 RHEESPEFYELYG-LGFGE-PLAISAEHARGTYELLDTIFERLP 164 >gi|221194745|ref|ZP_03567802.1| GTP-binding protein HflX [Atopobium rimae ATCC 49626] gi|221185649|gb|EEE18039.1| GTP-binding protein HflX [Atopobium rimae ATCC 49626] Length = 429 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 12/161 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+L G TNAGKSTL+N+ A V T R I E+ +I DT G Sbjct: 211 SVSLAGYTNAGKSTLLNQLTNASVYAKDELFATLDPTTRTITLEEGRKITLTDTVGFIQK 270 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSH-----RELKVNIHDLLKEIAKRSSRLILILN 138 + + + + + AD++ LVVD+ +E++V + +L +I + + +L+ N Sbjct: 271 LPTTLIESFKSTLAEAQAADLILLVVDASDKNFDKEIEV-VTSILNDIKVSAHKKLLVFN 329 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 KID + L + + VFI SA K G +L Sbjct: 330 KIDLLDTNNLAKMRTLYPDAVFI------SAQKAMGLRGLL 364 >gi|325133445|gb|EGC56109.1| tRNA modification GTPase TrmE [Neisseria meningitidis M13399] Length = 448 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|292806700|gb|ADE42480.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702663|emb|CAL88521.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F VS + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNVSVSHNRGISTLIDAVLNALNL 168 >gi|122702453|emb|CAL88417.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + TL L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAVLDTLNL 168 >gi|122701591|emb|CAL88185.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + ++++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSNLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|99905865|gb|ABF68627.1| YphC [Helicobacter pylori] gi|122702641|emb|CAL88510.1| GTPase [Helicobacter pylori] gi|242255928|gb|ACS88948.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALDL 168 >gi|94502356|ref|ZP_01308823.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451088|gb|EAT14046.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 429 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 V+++G N GKSTL N+ + + SIV++ TTR+ + + + F+DT GI N Sbjct: 197 VSIIGCPNVGKSTLFNKLLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINNNT 256 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRE 114 KD KL I+ ++S I +D++ V D E Sbjct: 257 KDYIEKLGIKKTYSKINKSDLILYVFDDLNE 287 >gi|16752564|ref|NP_444826.1| GTP-binding protein HflX, putative [Chlamydophila pneumoniae AR39] gi|7189200|gb|AAF38134.1| GTP-binding protein HflX, putative [Chlamydophila pneumoniae AR39] Length = 472 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 13/171 (7%) Query: 20 SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 SR G AL+G TN+GKSTL+N A + T R V ++ DT Sbjct: 225 SRRGIPTFALIGYTNSGKSTLLNLLTAADTYVEDKLFATLDPKTRKCVLPGGRHVLLTDT 284 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRL 133 G + + H D++ VVD+ L + +DL +E+ R+ Sbjct: 285 VGFIRKLPHTLVAAFKSTLEAAFHEDVLLHVVDASHPLALEHVQTTYDLFQELKIEKPRI 344 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLC 183 I +LNK+D L Q I KL + ++SA G G ++L+ + Sbjct: 345 ITVLNKVDR------LPQGSIPMKLRLLSPLPVLISAKTGEGIQNLLSLMT 389 >gi|62185493|ref|YP_220278.1| GTP-binding protein EngA [Chlamydophila abortus S26/3] gi|81312359|sp|Q5L4W4|DER_CHLAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|62148560|emb|CAH64331.1| putative GTP-binding protein [Chlamydophila abortus S26/3] Length = 474 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 9/127 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 +A++G N GKS+L NR ++IV + TTR + G + + +DT G+ ++ Sbjct: 4 IAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDKDS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR----SSRLILILNK 139 +D + K + + + + ADI+ LV+D ++ I +L EIAK+ LIL+ NK Sbjct: 64 EDHFQKHIYKQALAGANEADILLLVID----IRCGITELDAEIAKQLLYLKKPLILVANK 119 Query: 140 IDCVKPE 146 D +K E Sbjct: 120 ADTLKDE 126 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 16/156 (10%) Query: 9 FNEHKDFVQDN-------SRSGC------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ 55 F E K+F+ D+ S+S +AL+G N GKS+++N + + I+ + Sbjct: 185 FPETKEFLSDDEDEDTAFSQSSVADKPLKIALIGRPNVGKSSIINALLNEERCIIDNVPG 244 Query: 56 TTRSIVRGIVSEKESQIVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSH 112 TTR + + S + +F+DT G+ + K+S + + I ADI LV+D+ Sbjct: 245 TTRDNIDILYSHNDRSYLFIDTAGLRKMKSVKNSIEWISSSRTEKAIARADICLLVIDAT 304 Query: 113 RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERL 148 L +L I+K+ I+++NK D ++ R+ Sbjct: 305 HHLSSYDKRILSLISKQKKPHIILVNKWDLIEGVRM 340 >gi|307747860|gb|ADN91130.1| tRNA modification GTPase mnmE [Campylobacter jejuni subsp. jejuni M1] Length = 442 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ ++ + LS +++ ADI+ V D+ R + +A ++ ILNK D Sbjct: 277 DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 >gi|153952344|ref|YP_001397952.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. doylei 269.97] gi|166200471|sp|A7H372|MNME_CAMJD RecName: Full=tRNA modification GTPase mnmE gi|152939790|gb|ABS44531.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. doylei 269.97] Length = 442 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 60/117 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIIGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ ++ + LS +++ ADI+ V D+ R + + +A ++ ILNK D Sbjct: 277 DTIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFELLANTDKKIFWILNKSD 333 >gi|315452739|ref|YP_004073009.1| GTP-binding protein engA [Helicobacter felis ATCC 49179] gi|315131791|emb|CBY82419.1| GTP-binding protein engA [Helicobacter felis ATCC 49179] Length = 435 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 13/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG N GKS+L N V ++ +I + TTR I +G+VS + LDT G+ Sbjct: 4 IALVGRPNVGKSSLFNCLVKSRQAITSAFAGTTRDIRQGVVSLGGVFVQLLDTGGL---- 59 Query: 85 DSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D H L ++ S TI+ D+V VVD + + I ++ LI+NKID Sbjct: 60 DPGHALGTQITKHSLETIQKCDLVFYVVDGKQIPLDEDKNYFYRICQKVRNCFLIVNKID 119 Query: 142 CVKPERLLEQAEIANKLVFIEKT-FMVSATKGHGCDDVLNYLCSTLPL 188 + R E + F K F VSA+ G ++ + L L Sbjct: 120 NDQEAR-----EAYSFSSFGAKAMFFVSASHNRGLQALIQATITQLNL 162 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 10/123 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N V + ++V+ TT V +S +I F+DT G+ Sbjct: 179 VGIIGRVNVGKSSLLNALVQQERALVSEVAGTTIDPVDQHISHHGQEICFVDTAGLRQRS 238 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILN 138 K + + ++ + I LV+D + V DL ++IA K ++++ N Sbjct: 239 KIQGLEKYALDRTTKVLEQSQIAILVLD----VSVPFVDLDEKIAALVDKHRLGVVVVFN 294 Query: 139 KID 141 K D Sbjct: 295 KWD 297 >gi|242242839|ref|ZP_04797284.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] gi|242233740|gb|EES36052.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] Length = 82 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 42/63 (66%) Query: 236 EKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 ++ + + I IYVER SQK I++GK G+ +K + A+++I +L V+L L+VKVQ Sbjct: 3 KEDEDRVRIEATIYVERDSQKGIVIGKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQ 62 Query: 296 KDW 298 +DW Sbjct: 63 RDW 65 >gi|122702357|emb|CAL88369.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|220933188|ref|YP_002510096.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168] gi|219994498|gb|ACL71101.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168] Length = 463 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 8/118 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N V +IVT TTR I+ ++ + + +DT GI +D Sbjct: 230 IVGKPNVGKSSLLNSLVQENRAIVTDIPGTTRDIIEEYINIRGIPLRIIDTAGIRETRDM 289 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++ AD+V ++D + L + I+D++K+ +I+++NK D Sbjct: 290 VEKIGVEKTRNSLREADLVLFMLDVAQGLTEEDIKIYDMVKD-----KPMIVLVNKTD 342 >gi|330999637|ref|ZP_08323346.1| GTP-binding protein HflX [Parasutterella excrementihominis YIT 11859] gi|329574143|gb|EGG55719.1| GTP-binding protein HflX [Parasutterella excrementihominis YIT 11859] Length = 387 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 16/176 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR V T + R + ++V DT G Sbjct: 204 TVALVGYTNAGKSTLFNRLTRGGVYAADQLFATLDTTARRCFVGGDVEVVLSDTVGFI-- 261 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRLILIL 137 + H+L+ + + AD++ VVDS E ++ +L+EI + +L+ Sbjct: 262 RGLPHQLIEAFKSTLDEAAQADLLLHVVDSSTPAREEQMTEVNKVLEEIGAKDIPQLLVF 321 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD---DVLNYLCSTLPLAP 190 NKID + AE K +SA G G D D + + P P Sbjct: 322 NKIDLEGRSPFITCAEDGTP-----KAVGISAANGEGIDLLKDAIRQIAEKEPEEP 372 >gi|322381805|ref|ZP_08055759.1| EngA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154193|gb|EFX46515.1| EngA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 443 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A+VG N GKST+ N+ +G +++IV + TR + GI + +DT GI + Sbjct: 8 IIAIVGRPNVGKSTIFNKIIGDRLAIVEDRPGVTRDRLYGIGEWMNREFSIIDTGGIEID 67 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D K + + I+ +D++ +VD+ L + ++ + + + ++L +NK+D Sbjct: 68 GEDHIMKSVKVQAELAIEESDVIIFMVDAKSGLTPSDEEVAELLYRSRKPVVLAVNKVDN 127 Query: 143 VKPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +K Q EI L F + +S G G D+L P Sbjct: 128 LK-----RQDEIYEFYGLGFGD-PIPISGAHGLGIGDLLEAASRHFP 168 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL+G N GKS+LVN +G + IV+ + TTR + + + V +DT G+ Sbjct: 182 VALIGRPNVGKSSLVNAILGEERVIVSDQAGTTRDAIDTPFEKDGQKYVIIDTAGMRKRG 241 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I+ AD+V +V++ E +I E K + + ++N Sbjct: 242 KVYENTEKYSVMRALKAIERADVVLVVLNGEEGIIEQDKHIAGYAHEAGKAA---LFVVN 298 Query: 139 KIDCVK 144 K D V+ Sbjct: 299 KWDVVE 304 >gi|302391816|ref|YP_003827636.1| ribosome-associated GTPase EngA [Acetohalobium arabaticum DSM 5501] gi|302203893|gb|ADL12571.1| ribosome-associated GTPase EngA [Acetohalobium arabaticum DSM 5501] Length = 438 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 9/124 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG ++SIV + TR + G ++ + +DT G+ Sbjct: 5 VVAIVGRPNVGKSTLFNRIVGNRISIVEDEPSITRDRLYGEGEWLDNHFLVVDTGGLDLD 64 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILILN 138 ++ K +R I+ A++V VVD + I + +E+A +RS++ +IL +N Sbjct: 65 SEAELKDEVRQQAELAIEEAEVVLFVVDG----RTGIKPMDREVANLLRRSNKPIILTVN 120 Query: 139 KIDC 142 K+D Sbjct: 121 KVDS 124 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 13/179 (7%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E ++ +D R ++++G N GKS+LVN +G + IV TTR + ++ Sbjct: 169 ETGEYDEDTIR---ISVIGRPNVGKSSLVNSILGKERVIVNDVPGTTRDAIDTYFEVGDN 225 Query: 71 QIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 Q V +DT G+ + K + S + +D+ +V+D+ + + + Sbjct: 226 QFVIIDTAGMRKRSKVEAGIEKYSVIRSLKAVDRSDVALMVLDATQGITQQDKKIAGYAH 285 Query: 128 KRSSRLILILNKIDCVKPERLLEQA---EIANKLVFIEK---TFMVSATKGHGCDDVLN 180 + +++ +NK D +K E ++Q EI + FI TF VSA G ++L+ Sbjct: 286 DQGKAMVIAVNKWDLIKKETNIDQRYADEIRYEASFINYAPITF-VSALTGQRVLEILD 343 >gi|292806662|gb|ADE42461.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR + + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|157415218|ref|YP_001482474.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81116] gi|172047131|sp|A8FM10|MNME_CAMJ8 RecName: Full=tRNA modification GTPase mnmE gi|157386182|gb|ABV52497.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81116] gi|315931242|gb|EFV10213.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 327] Length = 442 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ ++ + LS +++ ADI+ V D+ R + +A ++ ILNK D Sbjct: 277 DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 >gi|153809063|ref|ZP_01961731.1| hypothetical protein BACCAC_03371 [Bacteroides caccae ATCC 43185] gi|149128396|gb|EDM19615.1| hypothetical protein BACCAC_03371 [Bacteroides caccae ATCC 43185] Length = 437 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 18/145 (12%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S I+ +D+ L++D+ R ++ ++ I K L++++NK Sbjct: 239 VNEDLEYYSVI--RSIRAIEGSDVCILMLDATRGIESQDLNIFSLIQKNQKGLVVVINKW 296 Query: 141 DCVKPERLLEQAEIANKLVFIEKTF 165 D V+ +K V ++KTF Sbjct: 297 DLVE-----------DKSVKVQKTF 310 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR ++ +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKSRRAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILIL 137 N+ D + + + + + AD++ VVD +L + + +L+ + +S +I++ Sbjct: 62 VNSDDIFEEEIRKQVLLAVDEADVILFVVDVMNGVTDLDMQVATILR---RANSPVIVVA 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 NK D L A KL + + +SA G G D+++ + Sbjct: 119 NKTDN---NELQYNAPEFYKL-GLGDPYCISAITGSGTGDLMDLIVG 161 >gi|122700733|emb|CAL87955.1| GTPase [Helicobacter pylori] gi|122702349|emb|CAL88365.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|114704716|ref|ZP_01437624.1| GTP-binding protein [Fulvimarina pelagi HTCC2506] gi|114539501|gb|EAU42621.1| GTP-binding protein [Fulvimarina pelagi HTCC2506] Length = 470 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 11/186 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL NR VG ++++V + TR G + +DT G+ NA Sbjct: 3 SIAIIGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRRPGEGRLMDLSFEIVDTAGLENA 62 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILNKID 141 +S M + I+ AD+ +VD + D E+A+R+ +++L+ NK + Sbjct: 63 HSESLSGRMREQTEEAIRIADLSLFMVDVKSGITPEDQD-FAEVARRAGGKIVLVANKAE 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW----VYSADQ 197 R + + + + +SA G G D+ + L L + + V S + Sbjct: 122 A----RDSDIGYLDAYALGLGDPVAISAEHGEGMGDLRDALVEALGIEVFDRDAVASDEA 177 Query: 198 ISDLPM 203 I D+P+ Sbjct: 178 IVDVPV 183 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 22/183 (12%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ +A+VG NAGKSTLVNR +G + + + TR + + DT Sbjct: 194 DETKPLRMAIVGRPNAGKSTLVNRMLGEERMLTGPEAGITRDSISVEWEWRGRHFKIFDT 253 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ KL + + +K A++V +V+D + ++ IA+ + Sbjct: 254 AGLRRKARVQEKLEKLSVADALRALKFAEVVVIVLDVTIPFERQDLTIVDLIAREGRAPV 313 Query: 135 LILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + NK D K ERLL Q V +T M+S G G D ++ + Sbjct: 314 IAFNKWDIAEDRQELAKELREKTERLLPQ-------VRGIRTVMISGETGEGLDRLMKAV 366 Query: 183 CST 185 T Sbjct: 367 VDT 369 >gi|146300457|ref|YP_001195048.1| tRNA modification GTPase TrmE [Flavobacterium johnsoniae UW101] gi|205829142|sp|A5FGE0|MNME_FLAJO RecName: Full=tRNA modification GTPase mnmE gi|146154875|gb|ABQ05729.1| tRNA modification GTPase TrmE [Flavobacterium johnsoniae UW101] Length = 466 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 10/166 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + + F+DT GI K Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIGGIGFRFIDTAGIRETK 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-----LILILNK 139 D + I+ ++ I A +V + D + K + + + EI + ++ L++++NK Sbjct: 284 DVVESIGIKKTFEKIDQAQVVIYLFDGLK-FKASSSEFVSEIEQIKNKYPLKPLLIVVNK 342 Query: 140 IDCVKPERLLEQAEIANKLVFIE-KTFMVSATKGHGCDDVLNYLCS 184 D + + +L I KL + K ++SA + G +++ N L S Sbjct: 343 KDILSEDEVL---NITQKLENLNAKLLLISAKQKIGVEELKNELLS 385 >gi|71894377|ref|YP_278485.1| tRNA modification GTPase TrmE [Mycoplasma synoviae 53] gi|123644156|sp|Q4A647|MNME_MYCS5 RecName: Full=tRNA modification GTPase mnmE gi|71851165|gb|AAZ43774.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma synoviae 53] Length = 463 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + +IVT+ TTR IV GI +DT GI + Sbjct: 237 LAIVGKPNVGKSSLLNTMLKEDKAIVTNVAGTTRDIVEGIYYLDNFIFKIIDTAGIRKTR 296 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ I S+ I ADIV + D S E ++I +++E + I ++NK D Sbjct: 297 QEIEKIGIERSYKAILDADIVLHLFDNLNSEDEFDLDIKKIVQE---NNKNYIKVVNKSD 353 Query: 142 C 142 Sbjct: 354 L 354 >gi|122702883|emb|CAL88631.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISVLIDAILSALNL 168 >gi|122702391|emb|CAL88386.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + V TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----TPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|325299810|ref|YP_004259727.1| GTP-binding protein engA [Bacteroides salanitronis DSM 18170] gi|324319363|gb|ADY37254.1| GTP-binding protein engA [Bacteroides salanitronis DSM 18170] Length = 437 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 9/137 (6%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS+L+N FVG + +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSLINAFVGEERNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S I+++D+ L++D+ R ++ ++ I + L++++NK Sbjct: 239 VNEDLEYYSVI--RSIRAIENSDVCILMLDATRGIEGQDLNIFSLIQRNQKGLVVVVNKW 296 Query: 141 DCV--KPERLLEQAEIA 155 D V K ++++ E A Sbjct: 297 DLVEEKSAKVMKTYETA 313 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 13/168 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWQGKEFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILI 136 N+ D + + + + + AD++ +VD +K + DL ++A +RS + +I++ Sbjct: 62 VNSDDIFEEEIRKQVILAMDEADVILFLVD----VKNGVTDLDMDVAAILRRSKKPVIVV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 NK D + AE + + + + + +SA G G D+L+ + S Sbjct: 118 ANKTD--NNDLQYNAAEFYS--LGLGEPYCISALSGSGTGDLLDLILS 161 >gi|315604206|ref|ZP_07879272.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 180 str. F0310] gi|315313912|gb|EFU61963.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 180 str. F0310] Length = 512 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 6/173 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V +DT G Sbjct: 78 VLAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRNFTLVDTGGWEID 137 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + AD V LV+D+ + + +++ + + +IL NK+D Sbjct: 138 VKGLDRSVAEQAEIAVDLADAVVLVLDATVGVTASDERIVEMLRSKDKPIILAANKVDSA 197 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 L++A+ A + + +SA G G D+L+ + TLP V SA Sbjct: 198 -----LQEADAAYLWSLGLGEPHPISALHGRGTGDLLDVVMETLPTESSVASA 245 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 10/145 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N G +V TTR V +V Q F+DT GI Sbjct: 254 VALVGRPNVGKSSLLNALAGGHRVVVNELAGTTRDPVDELVELDSRQWWFVDTAGIRRKM 313 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y + + + I+ A++ +++D L +++++ L+++ N Sbjct: 314 HRTTGADYYASIRTQ---AAIEKAEVALVLIDGAAPLTEQDVRVIQQVIDAGRALVVVTN 370 Query: 139 KIDCVKPERLLE-QAEIANKLVFIE 162 K D V +R E ++E+ +LV ++ Sbjct: 371 KWDLVDEDRQKEIKSELERELVQVQ 395 >gi|292806590|gb|ADE42425.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALNL 168 >gi|193222286|emb|CAL61445.2| GTP-binding protein HflX [Herminiimonas arsenicoxydans] Length = 372 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 13/159 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N K+ T + R I + +V DT G Sbjct: 191 SVSLVGYTNAGKSTLFNALAKTKMLAADQLFATLDTTSRRIYLGEAGNVVISDTVGFI-- 248 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILIL 137 ++ H+L+ R + HAD++ VVD ++ ++ +L+EI IL+ Sbjct: 249 RELPHQLVAAFRATLEETIHADLLLHVVDGASPARMEQIEEVNAVLREIGADQIPQILVW 308 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID E LE+ E I + F +SA G G D Sbjct: 309 NKIDAAGLEPALERDEYDK----IRRVF-ISAQTGSGLD 342 >gi|122702541|emb|CAL88460.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----TPKSFNISVSHNRGISALIDAILSALNL 168 >gi|221135459|ref|ZP_03561762.1| tRNA modification GTPase TrmE [Glaciecola sp. HTCC2999] Length = 458 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 10/148 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ E VQ ++ G V + G NAGKS+L+N G +IVT T Sbjct: 195 GDLQHIVETLALVQQQAKQGTILREGMQVVIAGRPNAGKSSLLNALSGRDAAIVTEIAGT 254 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR ++ + + +DT G+ ++ D ++ I +W I AD V +VDS Sbjct: 255 TRDVLSEHIHIDGMPLHIIDTAGLRDSPDVVEQIGIERAWQAINDADRVLFMVDSTESDS 314 Query: 117 VNIHDLLKEIAKR---SSRLILILNKID 141 + H + E + + + +I NK D Sbjct: 315 SDPHQIWPEFMAKLPDNMGVTIIKNKAD 342 >gi|218767437|ref|YP_002341949.1| tRNA modification GTPase TrmE [Neisseria meningitidis Z2491] gi|14195278|sp|Q9JWB7|MNME_NEIMA RecName: Full=tRNA modification GTPase mnmE gi|121051445|emb|CAM07738.1| probable thiophene and furan oxidation protein [Neisseria meningitidis Z2491] gi|319409699|emb|CBY90002.1| tRNA modification GTPase TrmE [Neisseria meningitidis WUE 2594] Length = 448 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|84496370|ref|ZP_00995224.1| GTP-binding protein EngA [Janibacter sp. HTCC2649] gi|84383138|gb|EAP99019.1| GTP-binding protein EngA [Janibacter sp. HTCC2649] Length = 497 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 4/156 (2%) Query: 32 NAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLM 91 N GKSTLVNR +G + ++V TR V + +DT G H + Sbjct: 70 NVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYDAEWTGTNFTLVDTGGWSVDAKGIHLRV 129 Query: 92 IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQ 151 + ++ AD V VVD+ + +++K + + +IL+ NK+D + E + Sbjct: 130 AEQAEIAVELADAVLFVVDAVVGATDDDQNVVKLLRRSGKPVILVANKVDDQRTE--ADA 187 Query: 152 AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 A + N + + + + VSA G G DVL+ + + LP Sbjct: 188 AALWN--LGLGQPWPVSALHGRGSGDVLDAILAVLP 221 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 14/178 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VAL+G N GKS+++N+ G++ +V TTR V + F+DT GI Sbjct: 237 VALLGRPNVGKSSMLNKLAGSERVVVDDVAGTTRDPVDEFIELGGKTWRFVDTAGIRRRV 296 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ ++VD+ + +++++ L++ N Sbjct: 297 HQTRGADFYASLRTQ---TALEKAEVAVVLVDASEAITEQDVRVIQQVVDSGRALVIAYN 353 Query: 139 KIDCVKPERLLEQA-EIANKLVFIEKT--FMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K D ER A EI LV I VSA G D ++ L ++ L W Y Sbjct: 354 KWDLTDEERRHYLAREIERDLVQIPWAPHVNVSAATGRHMDRLVPALETS--LESWDY 409 >gi|116053718|ref|YP_794045.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa UCBPP-PA14] gi|122256262|sp|Q02DE1|MNME_PSEAB RecName: Full=tRNA modification GTPase mnmE gi|115588939|gb|ABJ14954.1| putative GTPase for tRNA modification and thiophene and furan oxidation [Pseudomonas aeruginosa UCBPP-PA14] Length = 455 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D K+ + + I AD V LVVD+ + L E + ++ LI NK Sbjct: 278 EDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKA 337 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D LE E A+ V T +SA G G + + +L Sbjct: 338 DLSTESIGLE--ESADGHV----TITLSARTGAGLELLREHL 373 >gi|317452813|emb|CBL87842.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|313890874|ref|ZP_07824498.1| ribosome biogenesis GTPase Der [Streptococcus pseudoporcinus SPIN 20026] gi|313120772|gb|EFR43887.1| ribosome biogenesis GTPase Der [Streptococcus pseudoporcinus SPIN 20026] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + ++ R+ + +IL +NK+D Sbjct: 65 DAPFMEQIKHQAQIAMDEADVIVFVV-SGKEGVTDADEYVAKMLYRTHKPVILAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + +S+ G G DVL+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPLSSVHGIGTGDVLDAIVENLPV 165 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVF 74 V+DN +L+G N GKS+L+N +G I + TTR + ++ + Q Sbjct: 168 VEDNENIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFTDSDGQEFTM 227 Query: 75 LDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAK 128 +DT G+ + Y K + + I +D+V +V+++ RE I E K Sbjct: 228 IDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK 287 Query: 129 RSSRLILILNKIDCV 143 +I+++NK D + Sbjct: 288 ---GMIIVVNKWDTI 299 >gi|225849761|ref|YP_002729995.1| tRNA modification GTPase TrmE [Persephonella marina EX-H1] gi|225645890|gb|ACO04076.1| tRNA modification GTPase TrmE [Persephonella marina EX-H1] Length = 452 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +A+VG N GKS+L N VG + +IV+ TTR + VS K + LDT G Sbjct: 213 REGIKLAIVGRPNVGKSSLFNALVGYERAIVSEYRGTTRDFIEETVSIKGIPVKLLDTAG 272 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 + +D + I+ + I+ AD+V V D Sbjct: 273 LRETEDKIELIGIKKAKEKIEEADVVIFVFD 303 >gi|206901706|ref|YP_002250356.1| GTP-binding protein [Dictyoglomus thermophilum H-6-12] gi|206740809|gb|ACI19867.1| GTP-binding protein [Dictyoglomus thermophilum H-6-12] Length = 328 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 31/192 (16%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D+++ +G V LVG N GKS G S+V TT + G++ + QI Sbjct: 73 DYIEKEG-AGQVLLVGPPNTGKSKFFTLLTGVN-SLVAEYPFTTMDPIVGMLPYENIQIQ 130 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---- 129 +D P ++ + + ++ I++AD++ L + + V+ + ++E+ +R Sbjct: 131 LIDLPPLWEESEGWM-------YNLIRNADLIVLFLSMDLDSIVDEYLKIRELLERKKIK 183 Query: 130 ---------------SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +R I++LNKID PE ++ EI K + + F VSA +G Sbjct: 184 LVRDNPNRDPYSPIKENRGIVVLNKIDIFTPEERRDEIEIIEKDLNV---FYVSAEEGIN 240 Query: 175 CDDVLNYLCSTL 186 +D+ ++ L Sbjct: 241 MEDIKRHMFDAL 252 >gi|119947214|ref|YP_944894.1| tRNA modification GTPase TrmE [Psychromonas ingrahamii 37] gi|166234813|sp|A1T0N0|MNME_PSYIN RecName: Full=tRNA modification GTPase mnmE gi|119865818|gb|ABM05295.1| tRNA modification GTPase trmE [Psychromonas ingrahamii 37] Length = 455 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G NAGKS+L+N VG + +IVT TTR ++R + + +DT G Sbjct: 215 RDGMKVVIAGRPNAGKSSLLNSLVGVERAIVTDIAGTTRDVMREHIHIDGMPLHIIDTAG 274 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 + D K+ I +W I AD + ++D+ Sbjct: 275 LREGADEIEKIGIERAWQEITTADRILFMLDA 306 >gi|194333061|ref|YP_002014921.1| tRNA modification GTPase TrmE [Prosthecochloris aestuarii DSM 271] gi|194310879|gb|ACF45274.1| tRNA modification GTPase TrmE [Prosthecochloris aestuarii DSM 271] Length = 476 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 17/148 (11%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+G++ +H + S A++G NAGKSTL+N +G + +IV+H TTR + Sbjct: 216 EVGQLVDSYQHGRLL---SEGVATAIIGRPNAGKSTLLNALLGEERAIVSHMPGTTRDYI 272 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ DT G+ A + IR S+ I AD++ ++D ++ D Sbjct: 273 EECFVYDKTMFRLTDTAGLREAVEEIEHEGIRRSYEKIAQADLILYLMD------ISAGD 326 Query: 122 LLKEIAK--------RSSRLILILNKID 141 +EIA +++++ NK D Sbjct: 327 FAEEIAAIRTIAAQYPGTKMLVAANKTD 354 >gi|153007833|ref|YP_001369048.1| GTP-binding protein EngA [Ochrobactrum anthropi ATCC 49188] gi|166225832|sp|A6WW65|DER_OCHA4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151559721|gb|ABS13219.1| small GTP-binding protein [Ochrobactrum anthropi ATCC 49188] Length = 483 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 7/123 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 VA+VG N GKSTL NR VG K+++V TR R I K + F +DT G+ Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRD--RRIHDAKLYDLKFQVIDTAGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 A DS M + + I+ AD++ VVD+ L E+ +RS + ++L+ NK Sbjct: 62 EAANDSLEARMRAQTEAAIQEADVILFVVDAKNGL-TPTDSTFAEVVRRSGKPVVLVANK 120 Query: 140 IDC 142 + Sbjct: 121 AEA 123 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 16/180 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ +A+VG NAGKSTL+N +G + + TR + + +I DT Sbjct: 207 DATKPLRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISVDWEWRGRKIKLFDT 266 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ ++ KL + I+ A++V +V+D+ + + I DL I + Sbjct: 267 AGLRRKSRVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQIADL---IIREGR 323 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFI------EKTFMVSATKGHGCDDVLNYLCST 185 I+ NK D ++ +R + A++ K + + +S +G G D ++ + T Sbjct: 324 APIIAFNKWDLIE-DRQMVLADLYEKTARLLPQVRGLRAVPISGERGQGIDKLMENVVKT 382 >gi|149182297|ref|ZP_01860776.1| tRNA modification GTPase [Bacillus sp. SG-1] gi|148849989|gb|EDL64160.1| tRNA modification GTPase [Bacillus sp. SG-1] Length = 461 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 8/177 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 221 REGLSTVIVGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ E L K A +I+I+NK Sbjct: 281 IRETEDIVERIGVERSRQVLKEADLILLVLNYSDEFTYEDEQLFK--AVEGMDVIVIVNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 D + + E+A + + + + + G D+ L STL A + + D Sbjct: 339 TDLPQKIDMDRVKELAAEHAVVTTSLL----EEQGIDE-LEEAISTLFFAGSLEAGD 390 >gi|122701373|emb|CAL88076.1| GTPase [Helicobacter pylori] gi|122702783|emb|CAL88581.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|91777105|ref|YP_546861.1| tRNA modification GTPase TrmE [Methylobacillus flagellatus KT] gi|123078704|sp|Q1GXL7|MNME_METFK RecName: Full=tRNA modification GTPase mnmE gi|91711092|gb|ABE51020.1| tRNA modification GTPase trmE [Methylobacillus flagellatus KT] Length = 446 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 8/131 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L+N+ G +V+IVT TTR ++ + + DT G+ Sbjct: 218 VVLVGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNSIQINGITLHITDTAGLRETN 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL---ILILNKID 141 D + I +W +++A + L+VD+ I + K I R + I I NKID Sbjct: 278 DEVEQHGIARTWRALENAGVALLLVDAAH----GIGKVEKSILARLPQFLPKIWIHNKID 333 Query: 142 C-VKPERLLEQ 151 P ++ EQ Sbjct: 334 LESTPPKIEEQ 344 >gi|253699395|ref|YP_003020584.1| GTP-binding protein EngA [Geobacter sp. M21] gi|259645878|sp|C6E0Y6|DER_GEOSM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|251774245|gb|ACT16826.1| small GTP-binding protein [Geobacter sp. M21] Length = 440 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A+VG N GKSTL NR VG + ++V TR V+ + + +DT G Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVNRFDVPFILVDTGGFEPET 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + M S + AD++ V+D+ L D++ + + + + I+NK+D Sbjct: 65 SDRLLQQMREQSRFAMDEADLILFVMDARGGLTPADRDVVDMLRRINKPVFYIINKVDGE 124 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 K ++AE + ++ +SA G D+++ + + +P Sbjct: 125 K-----QEAEAGDFYSLGVDHIHTISAEHNRGVGDLMDEVLAAIP 164 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVNR +G + + TTR V + + + +DT GI Sbjct: 178 IAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRKG 237 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+ + + +I+ AD+V +V+++ + + + I ++NK D Sbjct: 238 KTVQKVEKYSVMDALRSIERADVVLIVLNAEEGVTEQDSKIAGYAYEAGRGCIFVVNKWD 297 Query: 142 CV 143 + Sbjct: 298 TL 299 >gi|122700629|emb|CAL87903.1| GTPase [Helicobacter pylori] gi|122700703|emb|CAL87940.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|18075565|emb|CAD11178.1| GTP-binding protein [Helicobacter pylori] gi|122702807|emb|CAL88593.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAILRALNL 168 >gi|317403342|gb|EFV83855.1| GTP-binding protein engA [Achromobacter xylosoxidans C54] Length = 451 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 VALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 6 VVALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGEIPFIVIDTGGFEPV 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILNKID 141 AKD M R + I AD+V +VD+ L + H++ + K R++L +NK Sbjct: 66 AKDGILLEMARQTRQAIAEADVVVFLVDARAGLNAHDHEIATLLRKSGQQRVLLAVNKA- 124 Query: 142 CVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E + A IA + + + + +SA G G D++ L Sbjct: 125 ----EGMGAGAAIAEFHELGLGQPYPISAAHGDGIVDLIELALQDL 166 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 10/163 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N +G + I TTR + + +DT G+ Sbjct: 188 LAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIDFERDGRRYTLIDTAGLRKRG 247 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK-- 139 ++ K + + I+ +++V L++D+ E+ + + + +++ +NK Sbjct: 248 KVFEAVEKFSVIKTLQAIEASNVVLLMLDAQTEISEQDAHIAGFVLETGRAVVVAVNKWD 307 Query: 140 -IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 +D + ER+ + E KL F+ + +SA +G G +L Sbjct: 308 GLDGEEKERI--EREFMRKLRFLSFARVHTISALRGQGIKPLL 348 >gi|316941690|gb|ADU75724.1| GTP-binding proten HflX [Clostridium thermocellum DSM 1313] Length = 608 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 15 FVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 F + +R+ +ALVG TNAGKSTL+NR + V T R + Sbjct: 375 FRESRTRNAIPTIALVGYTNAGKSTLMNRLCESNVLAEDKLFATLDPTTRSFRLSDGREA 434 Query: 73 VFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRE-----LKVNIHDLLKE 125 + +DT G + H+L+ + + +AD++ VVD+ E +KV ++D+L+ Sbjct: 435 LLIDTVGFI--RKLPHELVEAFKSTLEEAVYADMLIHVVDASNEEAEEQVKV-VNDILES 491 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + + +I+ LNK+D VK L + ++ F +SA G G D +L + Sbjct: 492 LGAANKPVIMALNKMDMVKGGLRLAISNPNGRI------FEISAVTGQGIDAMLEGIREM 545 Query: 186 LP 187 LP Sbjct: 546 LP 547 >gi|292806654|gb|ADE42457.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806694|gb|ADE42477.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|291547170|emb|CBL20278.1| GTP-binding protein HflX [Ruminococcus sp. SR1/5] Length = 411 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 19/191 (9%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E++ +H++ ++ G A+VG TNAGKSTL+N GA V T Sbjct: 178 ELSQVEKHRELIRSRRAVGNLKTAAIVGYTNAGKSTLLNTLTGASVLSEDKLFATLDPTT 237 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELK 116 R + + Q++ DT G + H L+ + + K+AD + VVD+ E++ Sbjct: 238 RLLTLDDGQQLLLTDTVGFI--RKLPHNLVEAFKSTLEEAKYADYIIHVVDASNPQAEIQ 295 Query: 117 VNI-HDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 ++I ++ LKE+ + I + NK D V E + + + T +SA G G Sbjct: 296 MHIVYETLKELGALGKKTITLFNKQDRVSGESFRD--------LRADHTLKISARTGEGL 347 Query: 176 DDVLNYLCSTL 186 ++ L L Sbjct: 348 EEFKQLLSEIL 358 >gi|291535016|emb|CBL08128.1| GTP-binding protein HflX [Roseburia intestinalis M50/1] Length = 414 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 17/170 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 A+VG TNAGKSTL+N GA V T R + +I+ DT G F Sbjct: 203 VAAIVGYTNAGKSTLLNHLTGAGVLEEDKLFATLDPTTRVLELPGRQEILLTDTVG-FIR 261 Query: 84 KDSYHKLMIRLSWSTI---KHADIVCLVVDS---HRELKVNI-HDLLKEIAKRSSRLILI 136 K +H +I ST+ K+AD + VVD+ R+ +++I +D L ++ R +I + Sbjct: 262 KLPHH--LIEAFKSTLEEAKYADYILHVVDASNPQRDKQMHIVYDTLYQLDIREKTIITL 319 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D V E + + + T VSA KG G +++ C+ L Sbjct: 320 FNKQDQVTDEEPIRDFK-------ADYTLAVSAKKGTGLEELKELFCTLL 362 >gi|262377654|ref|ZP_06070874.1| tRNA modification GTPase TrmE [Acinetobacter lwoffii SH145] gi|262307413|gb|EEY88556.1| tRNA modification GTPase TrmE [Acinetobacter lwoffii SH145] Length = 452 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 12/144 (8%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ ++ Sbjct: 204 VQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGIERAIVTDIAGTTRDVLHEKITLN 263 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE--LKVNIHDLLKE 125 I DT G+ D K IR + I+ AD++ LV D S E L++ + Sbjct: 264 GLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLLVYDLSQGEDPLQLAQEYFAEH 323 Query: 126 IAKRSSRLILILNKIDCVKPERLL 149 I + RL+LI NK D E ++ Sbjct: 324 IEPK--RLMLIGNKCDLTGAEAVI 345 >gi|291301883|ref|YP_003513161.1| small GTP-binding protein [Stackebrandtia nassauensis DSM 44728] gi|290571103|gb|ADD44068.1| small GTP-binding protein [Stackebrandtia nassauensis DSM 44728] Length = 465 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 12/188 (6%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F N D D VA+VG N GKSTLVNR +G + ++V TR + Sbjct: 10 FSNADTD--TDTGPVPIVAVVGRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRIAYDAQW 67 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +DT G + + I +D++ LVVD+ ++ D + Sbjct: 68 NGRKFTVVDTGGWEPDAVGRAAAIAAQAEQAIAASDVIVLVVDATVG-ATDVDDAAARVL 126 Query: 128 KRSSR-LILILNKIDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCS 184 R+++ +IL+ NK+D V+ E A +L + + + +SA G G D+L+ + Sbjct: 127 HRAAKPVILVANKVDSVRAE------ADATQLWSMGLGEPHPISALHGRGSGDLLDIILD 180 Query: 185 TLPLAPWV 192 LP P V Sbjct: 181 ALPELPSV 188 Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 10/180 (5%) Query: 16 VQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 V D++ G VALVG N GKS+L+NR G +V TT V ++ Sbjct: 188 VDDDTEGGPRRVALVGKPNVGKSSLLNRLAGEDRVVVDSVAGTTVDPVDSLIELGGETWQ 247 Query: 74 FLDTPG----IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 F+DT G + A + + +R S ++ A++ +++D+ + ++ ++ + Sbjct: 248 FVDTAGLRKRVKQASGTEYYASLRTQ-SAVEAAEVAVVLLDASEPISEQDQRVITQVVES 306 Query: 130 SSRLILILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 L++ NK D V +R + EI L ++ +SA G + +L + L Sbjct: 307 GRALVIAFNKWDLVDEDRRFQISREIDRDLRRVQWAPRVNISAATGRSVAKLTPFLHTAL 366 >gi|122702545|emb|CAL88462.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|75675642|ref|YP_318063.1| GTP-binding protein, HSR1-related [Nitrobacter winogradskyi Nb-255] gi|74420512|gb|ABA04711.1| GTP-binding protein HflX [Nitrobacter winogradskyi Nb-255] Length = 442 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 20/241 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R + + + DT G + Sbjct: 210 VVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRSLALPHGGKAMLSDTVGFISN 269 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA---KRSSRLILI 136 + R + + AD++ V D SH + + HD +L ++ +R+I + Sbjct: 270 LPTQLVAAFRATLEEVMEADVILHVRDISHEDTEPQQHDVEAVLHQLGIDPDGPARMIEV 329 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL----NYLCSTLPLAPWV 192 NKID ++ + +A + F+VSA G G + +L + L +T Sbjct: 330 WNKIDRFDADQRKDLENVAARRSTDVPRFLVSAETGEGVETLLAAIEDRLAATRTTLDLS 389 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVER 252 A + + H +E+ L KE+ +T + +E K IL+ + R Sbjct: 390 VDASDGAAISWLHRNSEV--------LAKELRDGRYDMTVRVDETKR-DILVNRYGAAPR 440 Query: 253 P 253 P Sbjct: 441 P 441 >gi|15677815|ref|NP_274979.1| tRNA modification GTPase TrmE [Neisseria meningitidis MC58] gi|14195279|sp|Q9JXL4|MNME_NEIMB RecName: Full=tRNA modification GTPase mnmE gi|7227248|gb|AAF42314.1| thiophene and furan oxidation protein ThdF [Neisseria meningitidis MC58] gi|316985629|gb|EFV64576.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76] gi|325139307|gb|EGC61848.1| tRNA modification GTPase TrmE [Neisseria meningitidis CU385] gi|325143695|gb|EGC66014.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240013] gi|325201035|gb|ADY96490.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76] gi|325206892|gb|ADZ02345.1| tRNA modification GTPase TrmE [Neisseria meningitidis M04-240196] Length = 448 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|254237759|ref|ZP_04931082.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126169690|gb|EAZ55201.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 455 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D K+ + + I AD V LVVD+ + L E + ++ LI NK Sbjct: 278 EDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKA 337 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D LE E A+ V T +SA G G + + +L Sbjct: 338 DLSTESIGLE--ESADGHV----TITLSARTGAGLELLREHL 373 >gi|145219270|ref|YP_001129979.1| GTP-binding protein EngA [Prosthecochloris vibrioformis DSM 265] gi|189037154|sp|A4SDB8|DER_PROVI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145205434|gb|ABP36477.1| small GTP-binding protein [Chlorobium phaeovibrioides DSM 265] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 14/180 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 +ALVG N GKSTL NR + + +IV T V R I G + ++ +DT G Sbjct: 5 IALVGRPNVGKSTLFNRILRERAAIVDSTPGVTRDRHISEGFWQGRAFRL--MDTGGYAP 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR--LILILNKI 140 M+ + + I ADIV V D+ L + +L K + +R S + +NK+ Sbjct: 63 EDGVISNAMLEQTMTAINDADIVVFVADARAGLSYDDLELAKVLRQRFSHKPVFFAVNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + P+ E A + + + +SA G G D+L+ + +P + ADQ D Sbjct: 123 ES--PQLAYEAASFVS--TGYTEPWCISAKDGSGVADLLDAILLEMPES----DADQEED 174 Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust. Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 9/136 (6%) Query: 18 DNSRSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 D G + A+VG N GKS+ VN +G IV+ TTR + + + + + Sbjct: 170 DQEEDGAIRLAVVGRPNVGKSSFVNALLGNNRQIVSDIPGTTRDAIDTRFTRNQQDFLLI 229 Query: 76 DTPGI-----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 DT G+ +A Y+ + S I+ ++V +++D+ ++ ++ +R Sbjct: 230 DTAGLRKRTKISAGIEYYSSL--RSEKAIERCEVVMVMIDAGPGIEKQDLKIINMATERK 287 Query: 131 SRLILILNKIDCVKPE 146 ++L++NK D ++ + Sbjct: 288 RAVLLLVNKWDLIEKD 303 >gi|325127365|gb|EGC50299.1| tRNA modification GTPase TrmE [Neisseria meningitidis N1568] Length = 448 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|319407564|emb|CBI81214.1| GTP-binding protein [Bartonella sp. 1-1C] Length = 477 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 13/168 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V + TR R I S K + F +DT G+ Sbjct: 4 TIAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRD--RRIHSAKLQDLHFDVIDTAGLE 61 Query: 82 NAKDSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 A + H L R+ T I AD++ V+D+ + + D I K ++L+ N Sbjct: 62 EADN--HTLEGRMRAQTKIAIDEADLILFVLDAKSGITRSDLDFSSLIRKSGKPIVLVSN 119 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K + ++ E + + + +SA GHG D+ + + + + Sbjct: 120 KSES----KIAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAI 163 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 7/138 (5%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 +D V D ++ +A++G N GKSTL+N + + + TR + + Sbjct: 196 EEDPVYDEKKTIRIAVIGRPNTGKSTLINSMLKQDRLLTGPEAGITRDSISVDWEWNNRR 255 Query: 72 IVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIA 127 I DT G+ ++ KL + S I+ A+IV +V D+ + DL + ++ Sbjct: 256 IKLFDTAGLRRKSKVQEKLEKLSVVDSLRAIRFAEIVVIVFDATTSFEK--QDLQISDLV 313 Query: 128 KRSSRL-ILILNKIDCVK 144 R R+ I+ NK D ++ Sbjct: 314 IREGRVPIIAFNKWDLIE 331 >gi|291522706|emb|CBK80999.1| GTP-binding protein HflX [Coprococcus catus GD/7] Length = 419 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 A+VG TNAGKSTL+NR GA V T R + + +++ DT G + Sbjct: 203 VAAIVGYTNAGKSTLLNRLTGAGVLEEDKLFATLDPTTRNLTLDDGQELLLTDTVGFIHK 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAK---RSSRLILILNK 139 + R + K+ADI+ +VD S+ + ++++H + + +A + ++I + NK Sbjct: 263 LPHHLVDAFRSTLEEAKYADILIHMVDASNPQAEMHMHVVYETLAALDIKDKKIITVFNK 322 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D ++ + L ++ K + T S +G G D +L+ + + L Sbjct: 323 TDLIRDQESL----VSLKDFRADYTVTASVKQGTGLDALLSTVQTIL 365 >gi|288803890|ref|ZP_06409315.1| ribosome-associated GTPase EngA [Prevotella melaninogenica D18] gi|288333655|gb|EFC72105.1| ribosome-associated GTPase EngA [Prevotella melaninogenica D18] Length = 437 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 8/184 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV+ TTR G + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + + AD+V VVD+ + D+ + + ++L+ NK+ Sbjct: 62 VKSDDIFEDAIRKQVLVATEEADLVLFVVDTETGITDWDEDVALILRRTKLPVLLVANKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D + AE + + + +SA G G D+L+ L L P + DQ D Sbjct: 122 D--NSGEYYQAAEFYK--LGLGEPICISAATGGGTGDLLDILLENLKDVP-EEAVDQ--D 174 Query: 201 LPMF 204 +P F Sbjct: 175 IPRF 178 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++++ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VSEDLEFYSVMRSIRSIENSEVCILMLDATRGIEAQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 >gi|254779193|ref|YP_003057298.1| GTP-binding protein EngA [Helicobacter pylori B38] gi|254001104|emb|CAX29059.1| Putative GTP-binding protein, EngA family [Helicobacter pylori B38] Length = 461 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + E+A A + K+F +S + G +++ + TL L Sbjct: 128 DKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAILDTLNL 169 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHRG 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|73668119|ref|YP_304134.1| GTP-binding protein [Methanosarcina barkeri str. Fusaro] gi|72395281|gb|AAZ69554.1| GTP-binding protein [Methanosarcina barkeri str. Fusaro] Length = 364 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S G V LVG + GKSTL+N+ GA ++ ++ TT ++V G++ K + I FLD PG Sbjct: 60 SGDGTVTLVGFPSVGKSTLLNKITGANSAVGAYEF-TTLTVVPGVLEHKGATIQFLDVPG 118 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 + S + R S I+++D+V ++D Sbjct: 119 LVKGASS-GRGRGREVISVIRNSDMVIFLLD 148 >gi|281419096|ref|ZP_06250113.1| GTP-binding proten HflX [Clostridium thermocellum JW20] gi|281407245|gb|EFB37506.1| GTP-binding proten HflX [Clostridium thermocellum JW20] Length = 608 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 15 FVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 F + +R+ +ALVG TNAGKSTL+NR + V T R + Sbjct: 375 FRESRTRNAIPTIALVGYTNAGKSTLMNRLCESNVLAEDKLFATLDPTTRSFRLSDGREA 434 Query: 73 VFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRE-----LKVNIHDLLKE 125 + +DT G + H+L+ + + +AD++ VVD+ E +KV ++D+L+ Sbjct: 435 LLIDTVGFI--RKLPHELVEAFKSTLEEAVYADMLIHVVDASNEEAEEQVKV-VNDILES 491 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + + +I+ LNK+D VK L + ++ F +SA G G D +L + Sbjct: 492 LGAANKPVIMALNKMDMVKGGLRLAISNPNGRI------FEISAVTGQGIDAMLEGIREM 545 Query: 186 LP 187 LP Sbjct: 546 LP 547 >gi|122700719|emb|CAL87948.1| GTPase [Helicobacter pylori] gi|292806668|gb|ADE42464.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806676|gb|ADE42468.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|42780705|ref|NP_977952.1| GTP-binding protein EngA [Bacillus cereus ATCC 10987] gi|81831124|sp|Q73AZ1|DER_BACC1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|42736625|gb|AAS40560.1| GTPase family protein [Bacillus cereus ATCC 10987] Length = 436 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVD-- 122 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +++I + L F E F +S T G G D+L+ P Sbjct: 123 NPEM---RSDIYDFYALGFGEP-FPISGTHGLGLGDLLDEAAQHFP 164 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +++++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVVIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 AVK 300 >gi|229160554|ref|ZP_04288549.1| GTP-binding protein engA [Bacillus cereus R309803] gi|228622964|gb|EEK79795.1| GTP-binding protein engA [Bacillus cereus R309803] Length = 438 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 7 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGDWLNHEFNIIDTGGIDIG 66 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + + ++L +NK+D Sbjct: 67 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVD-- 124 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +++I + L F E F +S T G G D+L+ P Sbjct: 125 NPEM---RSDIYDFYALGFGEP-FPISGTHGLGLGDLLDEAAQHFP 166 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ V +DT G+ Sbjct: 181 SLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGK 240 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +++++NK D Sbjct: 241 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVVIVVNKWD 299 Query: 142 CVK 144 VK Sbjct: 300 AVK 302 >gi|153833535|ref|ZP_01986202.1| GTP-binding protein EngA [Vibrio harveyi HY01] gi|148870186|gb|EDL69127.1| GTP-binding protein EngA [Vibrio harveyi HY01] Length = 498 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ M S + I AD+V +VD L + + + K +L++NKID Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVNKIDG 123 Query: 143 VKPE 146 + + Sbjct: 124 IDAD 127 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 212 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRG 271 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 272 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 331 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + + E+ +L F++ + +SA G G Sbjct: 332 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGV 368 >gi|154253563|ref|YP_001414387.1| GTP-binding protein HSR1-like [Parvibaculum lavamentivorans DS-1] gi|154157513|gb|ABS64730.1| GTP-binding protein HSR1-related [Parvibaculum lavamentivorans DS-1] Length = 474 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 14/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R +V +I+ DT G + Sbjct: 228 IVALVGYTNAGKSTLFNRLTEAGVFAENLLFATLDPTMRALVLPSGRKIILSDTVGFISD 287 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK----------EIAKRSSR 132 ++ R + + A+++ V D +H E + D+ K A Sbjct: 288 LPTHLVAAFRATLEEVLEAEVILHVRDAAHEETAIQKTDVEKVLTSLGVTRESTAANGQH 347 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 ++ +LNKID ++ E A + N + T VSA G G +++LN + S Sbjct: 348 VVDVLNKIDLLEGE--FRDAAV-NLAMREPMTVAVSALTGDGTENLLNLIDS 396 >gi|18075567|emb|CAD11179.1| GTP-binding protein [Helicobacter pylori] gi|18075569|emb|CAD11180.1| GTP-binding protein [Helicobacter pylori] gi|122702793|emb|CAL88586.1| GTPase [Helicobacter pylori] gi|122702813|emb|CAL88596.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L+NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLLNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|15837067|ref|NP_297755.1| GTP-binding protein EngA [Xylella fastidiosa 9a5c] gi|26006743|sp|Q9PG37|DER_XYLFA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|9105311|gb|AAF83275.1|AE003896_12 GTP-binding protein [Xylella fastidiosa 9a5c] Length = 465 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 VALVG N GKSTL N + ++V + TR G+ + + +DT G+ Sbjct: 5 VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D R + AD+V VV+ + D+L + K S +L++NKID V Sbjct: 65 EDGLAGATARQARLAAAEADVVLFVVNVREGVSALDDDILAWLRKLSQPTLLVINKIDGV 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +E A+ VSA G DD++ + + LP Sbjct: 125 SDATV--HSEFAH--YGFSDVVPVSAAHRQGLDDLIEQVLAWLP 164 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 6/156 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + IV+ TTR + + E + +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDECRYRLVDTAGLRRKS 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQVIEQCQVAVLLLDAGEGVTDQDATVLAAILDAGKALVVAMNKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIEKTFMVSATKGHGC 175 + + EQAE ++ KL F+ +V + HG Sbjct: 301 GLGTYQ-REQAEDLLSRKLGFVNWAEVVRLSAKHGS 335 >gi|30019652|ref|NP_831283.1| GTP-binding protein EngA [Bacillus cereus ATCC 14579] gi|30261599|ref|NP_843976.1| GTP-binding protein EngA [Bacillus anthracis str. Ames] gi|47526799|ref|YP_018148.1| GTP-binding protein EngA [Bacillus anthracis str. 'Ames Ancestor'] gi|47565966|ref|ZP_00237004.1| GTP-binding protein, Era/ThdF family [Bacillus cereus G9241] gi|49184431|ref|YP_027683.1| GTP-binding protein EngA [Bacillus anthracis str. Sterne] gi|49477254|ref|YP_035720.1| GTP-binding protein EngA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143844|ref|YP_082984.1| GTP-binding protein EngA [Bacillus cereus E33L] gi|65318869|ref|ZP_00391828.1| COG1160: Predicted GTPases [Bacillus anthracis str. A2012] gi|118477058|ref|YP_894209.1| GTP-binding protein EngA [Bacillus thuringiensis str. Al Hakam] gi|165869461|ref|ZP_02214120.1| GTPase family protein [Bacillus anthracis str. A0488] gi|167633435|ref|ZP_02391760.1| GTPase family protein [Bacillus anthracis str. A0442] gi|167639189|ref|ZP_02397462.1| GTPase family protein [Bacillus anthracis str. A0193] gi|170686176|ref|ZP_02877398.1| GTPase family protein [Bacillus anthracis str. A0465] gi|170706475|ref|ZP_02896935.1| GTPase family protein [Bacillus anthracis str. A0389] gi|177650444|ref|ZP_02933411.1| GTPase family protein [Bacillus anthracis str. A0174] gi|190568605|ref|ZP_03021510.1| ribosome-associated GTPase EngA [Bacillus anthracis Tsiankovskii-I] gi|196033560|ref|ZP_03100972.1| ribosome-associated GTPase EngA [Bacillus cereus W] gi|196038987|ref|ZP_03106294.1| ribosome-associated GTPase EngA [Bacillus cereus NVH0597-99] gi|196046647|ref|ZP_03113871.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB108] gi|206970720|ref|ZP_03231672.1| ribosome-associated GTPase EngA [Bacillus cereus AH1134] gi|206974925|ref|ZP_03235840.1| ribosome-associated GTPase EngA [Bacillus cereus H3081.97] gi|217959081|ref|YP_002337629.1| GTP-binding protein EngA [Bacillus cereus AH187] gi|218231181|ref|YP_002366284.1| GTP-binding protein EngA [Bacillus cereus B4264] gi|218902715|ref|YP_002450549.1| ribosome-associated GTPase EngA [Bacillus cereus AH820] gi|222095233|ref|YP_002529293.1| gtp-binding protein enga [Bacillus cereus Q1] gi|225863467|ref|YP_002748845.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB102] gi|227815649|ref|YP_002815658.1| ribosome-associated GTPase EngA [Bacillus anthracis str. CDC 684] gi|228914177|ref|ZP_04077795.1| GTP-binding protein engA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228920314|ref|ZP_04083661.1| GTP-binding protein engA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926634|ref|ZP_04089703.1| GTP-binding protein engA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932889|ref|ZP_04095756.1| GTP-binding protein engA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945203|ref|ZP_04107559.1| GTP-binding protein engA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228951980|ref|ZP_04114077.1| GTP-binding protein engA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957879|ref|ZP_04119619.1| GTP-binding protein engA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228984682|ref|ZP_04144855.1| GTP-binding protein engA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229043348|ref|ZP_04191066.1| GTP-binding protein engA [Bacillus cereus AH676] gi|229069156|ref|ZP_04202447.1| GTP-binding protein engA [Bacillus cereus F65185] gi|229078786|ref|ZP_04211339.1| GTP-binding protein engA [Bacillus cereus Rock4-2] gi|229090565|ref|ZP_04221800.1| GTP-binding protein engA [Bacillus cereus Rock3-42] gi|229109059|ref|ZP_04238659.1| GTP-binding protein engA [Bacillus cereus Rock1-15] gi|229121146|ref|ZP_04250383.1| GTP-binding protein engA [Bacillus cereus 95/8201] gi|229126917|ref|ZP_04255928.1| GTP-binding protein engA [Bacillus cereus BDRD-Cer4] gi|229138297|ref|ZP_04266892.1| GTP-binding protein engA [Bacillus cereus BDRD-ST26] gi|229144202|ref|ZP_04272616.1| GTP-binding protein engA [Bacillus cereus BDRD-ST24] gi|229149801|ref|ZP_04278030.1| GTP-binding protein engA [Bacillus cereus m1550] gi|229155169|ref|ZP_04283281.1| GTP-binding protein engA [Bacillus cereus ATCC 4342] gi|229178011|ref|ZP_04305383.1| GTP-binding protein engA [Bacillus cereus 172560W] gi|229183798|ref|ZP_04311015.1| GTP-binding protein engA [Bacillus cereus BGSC 6E1] gi|229189685|ref|ZP_04316699.1| GTP-binding protein engA [Bacillus cereus ATCC 10876] gi|229195804|ref|ZP_04322564.1| GTP-binding protein engA [Bacillus cereus m1293] gi|229602142|ref|YP_002866007.1| ribosome-associated GTPase EngA [Bacillus anthracis str. A0248] gi|254683091|ref|ZP_05146952.1| GTP-binding protein EngA [Bacillus anthracis str. CNEVA-9066] gi|254723679|ref|ZP_05185465.1| GTP-binding protein EngA [Bacillus anthracis str. A1055] gi|254734440|ref|ZP_05192152.1| GTP-binding protein EngA [Bacillus anthracis str. Western North America USA6153] gi|254740851|ref|ZP_05198539.1| GTP-binding protein EngA [Bacillus anthracis str. Kruger B] gi|254755089|ref|ZP_05207123.1| GTP-binding protein EngA [Bacillus anthracis str. Vollum] gi|254759626|ref|ZP_05211650.1| GTP-binding protein EngA [Bacillus anthracis str. Australia 94] gi|296502173|ref|YP_003663873.1| GTP-binding protein EngA [Bacillus thuringiensis BMB171] gi|300117468|ref|ZP_07055258.1| GTP-binding protein EngA [Bacillus cereus SJ1] gi|301053141|ref|YP_003791352.1| GTP-binding protein EngA [Bacillus anthracis CI] gi|37999522|sp|Q81FR5|DER_BACCR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|37999526|sp|Q81SW9|DER_BACAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81824337|sp|Q63DM8|DER_BACCZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81828346|sp|Q6HL51|DER_BACHK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224305|sp|A0RBV9|DER_BACAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741128|sp|B7JGY9|DER_BACC0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741130|sp|B7HHQ7|DER_BACC4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741131|sp|B7HL14|DER_BACC7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783135|sp|C3P591|DER_BACAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783136|sp|C3L9F4|DER_BACAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783137|sp|C1EN01|DER_BACC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783138|sp|B9IVM6|DER_BACCQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29895196|gb|AAP08484.1| GTP-binding protein [Bacillus cereus ATCC 14579] gi|30255453|gb|AAP25462.1| ribosome-associated GTPase EngA [Bacillus anthracis str. Ames] gi|47501947|gb|AAT30623.1| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47556883|gb|EAL15213.1| GTP-binding protein, Era/ThdF family [Bacillus cereus G9241] gi|49178358|gb|AAT53734.1| GTPase family protein [Bacillus anthracis str. Sterne] gi|49328810|gb|AAT59456.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977313|gb|AAU18863.1| GTP-binding protein [Bacillus cereus E33L] gi|118416283|gb|ABK84702.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam] gi|164714901|gb|EDR20419.1| GTPase family protein [Bacillus anthracis str. A0488] gi|167512979|gb|EDR88352.1| GTPase family protein [Bacillus anthracis str. A0193] gi|167531473|gb|EDR94151.1| GTPase family protein [Bacillus anthracis str. A0442] gi|170128573|gb|EDS97440.1| GTPase family protein [Bacillus anthracis str. A0389] gi|170669873|gb|EDT20614.1| GTPase family protein [Bacillus anthracis str. A0465] gi|172083588|gb|EDT68648.1| GTPase family protein [Bacillus anthracis str. A0174] gi|190560205|gb|EDV14185.1| ribosome-associated GTPase EngA [Bacillus anthracis Tsiankovskii-I] gi|195993994|gb|EDX57950.1| ribosome-associated GTPase EngA [Bacillus cereus W] gi|196022580|gb|EDX61263.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB108] gi|196030132|gb|EDX68732.1| ribosome-associated GTPase EngA [Bacillus cereus NVH0597-99] gi|206734356|gb|EDZ51526.1| ribosome-associated GTPase EngA [Bacillus cereus AH1134] gi|206746944|gb|EDZ58336.1| ribosome-associated GTPase EngA [Bacillus cereus H3081.97] gi|217067748|gb|ACJ81998.1| ribosome-associated GTPase EngA [Bacillus cereus AH187] gi|218159138|gb|ACK59130.1| ribosome-associated GTPase EngA [Bacillus cereus B4264] gi|218536841|gb|ACK89239.1| ribosome-associated GTPase EngA [Bacillus cereus AH820] gi|221239291|gb|ACM12001.1| GTP-binding protein [Bacillus cereus Q1] gi|225788315|gb|ACO28532.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB102] gi|227004060|gb|ACP13803.1| ribosome-associated GTPase EngA [Bacillus anthracis str. CDC 684] gi|228587701|gb|EEK45759.1| GTP-binding protein engA [Bacillus cereus m1293] gi|228593734|gb|EEK51539.1| GTP-binding protein engA [Bacillus cereus ATCC 10876] gi|228599647|gb|EEK57250.1| GTP-binding protein engA [Bacillus cereus BGSC 6E1] gi|228605499|gb|EEK62948.1| GTP-binding protein engA [Bacillus cereus 172560W] gi|228628296|gb|EEK85011.1| GTP-binding protein engA [Bacillus cereus ATCC 4342] gi|228633665|gb|EEK90265.1| GTP-binding protein engA [Bacillus cereus m1550] gi|228639210|gb|EEK95626.1| GTP-binding protein engA [Bacillus cereus BDRD-ST24] gi|228645189|gb|EEL01426.1| GTP-binding protein engA [Bacillus cereus BDRD-ST26] gi|228656517|gb|EEL12344.1| GTP-binding protein engA [Bacillus cereus BDRD-Cer4] gi|228662265|gb|EEL17868.1| GTP-binding protein engA [Bacillus cereus 95/8201] gi|228674337|gb|EEL29581.1| GTP-binding protein engA [Bacillus cereus Rock1-15] gi|228692768|gb|EEL46492.1| GTP-binding protein engA [Bacillus cereus Rock3-42] gi|228704468|gb|EEL56901.1| GTP-binding protein engA [Bacillus cereus Rock4-2] gi|228713908|gb|EEL65792.1| GTP-binding protein engA [Bacillus cereus F65185] gi|228725996|gb|EEL77235.1| GTP-binding protein engA [Bacillus cereus AH676] gi|228775076|gb|EEM23469.1| GTP-binding protein engA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228801795|gb|EEM48672.1| GTP-binding protein engA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807705|gb|EEM54227.1| GTP-binding protein engA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228814438|gb|EEM60703.1| GTP-binding protein engA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826810|gb|EEM72577.1| GTP-binding protein engA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833010|gb|EEM78578.1| GTP-binding protein engA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839337|gb|EEM84631.1| GTP-binding protein engA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228845510|gb|EEM90543.1| GTP-binding protein engA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266550|gb|ACQ48187.1| ribosome-associated GTPase EngA [Bacillus anthracis str. A0248] gi|296323225|gb|ADH06153.1| GTP-binding protein EngA [Bacillus thuringiensis BMB171] gi|298725303|gb|EFI65955.1| GTP-binding protein EngA [Bacillus cereus SJ1] gi|300375310|gb|ADK04214.1| GTP-binding protein EngA [Bacillus cereus biovar anthracis str. CI] gi|324325620|gb|ADY20880.1| GTP-binding protein Der [Bacillus thuringiensis serovar finitimus YBT-020] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVD-- 122 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +++I + L F E F +S T G G D+L+ P Sbjct: 123 NPEM---RSDIYDFYALGFGEP-FPISGTHGLGLGDLLDEAAQHFP 164 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +++++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVVIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 AVK 300 >gi|168214119|ref|ZP_02639744.1| GTP binding protein [Clostridium perfringens CPE str. F4969] gi|170714354|gb|EDT26536.1| GTP binding protein [Clostridium perfringens CPE str. F4969] Length = 597 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 113/263 (42%), Gaps = 41/263 (15%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ------ 55 E+ +I E + + ++ V+LVG TNAGKSTL N S + + + Sbjct: 343 ELKKIKKIRETQRERRSKDKTSQVSLVGYTNAGKSTLRNTLCAESASTLATQAKDKVFEA 402 Query: 56 -----TTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLV 108 T + R I I DT G + H+L+ + + + ++D++C V Sbjct: 403 DMLFATLDTTTRAIKLPDNRDITLTDTVGFVSKLP--HELVEAFKSTLEEVIYSDLLCHV 460 Query: 109 VDSH----RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE----QAEIANKLVF 160 VD+ +E + + +L E+ S IL+LNKID E++ E + I NK+V Sbjct: 461 VDASSDNAQEEIIAVEKVLGELKALESAKILVLNKIDKADEEKINELEVKYSSIYNKVVK 520 Query: 161 IEKTFMVSATKGHGCDDVLNYLCSTLPLA----PWV--YSADQISDLPMFHFTAEITREK 214 I SA + DD+L + LP ++ Y+A Q+ + H A ++ E+ Sbjct: 521 I------SARERINLDDLLEAISEELPYTLKSKEYIIPYTAQQV--VAYLHRNANVSEEE 572 Query: 215 LFLHLHKEIPYSSCVVTEKWEEK 237 +E Y V E+ E K Sbjct: 573 ----YREEGTYIKAEVDEEVENK 591 >gi|122702387|emb|CAL88384.1| GTPase [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122700663|emb|CAL87920.1| GTPase [Helicobacter pylori] gi|122701585|emb|CAL88182.1| GTPase [Helicobacter pylori] gi|122701587|emb|CAL88183.1| GTPase [Helicobacter pylori] gi|292806594|gb|ADE42427.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806596|gb|ADE42428.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|15827717|ref|NP_301980.1| GTP-binding protein EngA [Mycobacterium leprae TN] gi|221230194|ref|YP_002503610.1| GTP-binding protein EngA [Mycobacterium leprae Br4923] gi|13093268|emb|CAC31753.1| possible GTP-binding protein [Mycobacterium leprae] gi|219933301|emb|CAR71467.1| possible GTP-binding protein [Mycobacterium leprae Br4923] Length = 462 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 16/187 (8%) Query: 9 FNEHKDFVQDNSR----SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 +++ D+ D+S VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 8 WSDESDWELDDSDLAEFGPVVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYD 67 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 + V DT G +L+ + ++ AD V LVVD + V D + Sbjct: 68 AMWTGRRFVVQDTGGWEPDAKGLKRLVAEQASVAMRTADAVILVVD----VGVGATDADE 123 Query: 125 EIAK---RSSRLI-LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 A+ RS +L+ L NK+D K E A L E +SA G G D+L+ Sbjct: 124 AAARILLRSGKLVFLAANKVDGEKGE---SDASALWSLGLGEP-HAISAMHGRGVADLLD 179 Query: 181 YLCSTLP 187 + + LP Sbjct: 180 KVLAALP 186 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 18/185 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ F+DT G+ Sbjct: 201 VALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIEMGGRVWRFVDTAGLRRKV 260 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + I A++V +++D+ L +L + L+L NK D Sbjct: 261 GQASGHEFYASVRTHGAIDSAEVVIMLIDASEPLTGQDQRVLSMVIDAGRALVLAFNKWD 320 Query: 142 CVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL----NYLCS------TLP 187 V +R LLE+ EI +LV + + +SA G ++ N L S T P Sbjct: 321 LVDEDRCDLLER-EIDRELVQVRWAQRVNISAKTGRAVQKLVPAMENSLASWDTRIATGP 379 Query: 188 LAPWV 192 L W+ Sbjct: 380 LNIWI 384 >gi|238916971|ref|YP_002930488.1| GTP-binding protein [Eubacterium eligens ATCC 27750] gi|259645875|sp|C4Z0C8|DER_EUBE2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238872331|gb|ACR72041.1| GTP-binding protein [Eubacterium eligens ATCC 27750] Length = 441 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 4/142 (2%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 ++ F E D +++ R VA++G N GKS+++N+ VG IV+ TTR + + Sbjct: 162 VSHFPEGSDTDKEDDRP-KVAIIGKPNVGKSSIINKLVGKNRVIVSDIAGTTRDAIDTAI 220 Query: 66 SEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + VF+DT G+ K+ + I + + ++ ADI LV+D+ + + Sbjct: 221 KYNGKEYVFIDTAGLRRKSKIKEDLERFSIIRTVAAVERADIAILVIDATEGVTEQDAKI 280 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 +R +I+ +NK D ++ Sbjct: 281 AGIAHERGKGIIIAVNKWDDIE 302 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G ++SIV TR + VS +DT GI + Sbjct: 5 IVAVVGRPNVGKSTLFNSLCGQQISIVKDTPGVTRDRIYAEVSWLNHNFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 D M + I+ AD++ + D + L V+ + ++ +RS + +IL++NK+D Sbjct: 65 TGDIILSQMREQAEIAIETADVIIFMTDVKQGL-VDSDSKVADMLRRSHKPVILVVNKVD 123 Query: 142 CVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+++ E N + I + F +SA G +VL+ + S P Sbjct: 124 SF--EKMMPDVYEFYN--LGIGEPFPISAVNKLGFGEVLDEVVSHFP 166 >gi|157412804|ref|YP_001483670.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9215] gi|166920102|sp|A8G3A3|DER_PROM2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157387379|gb|ABV50084.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9215] Length = 457 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 ++D+ ++++G N GKS+L+N G K +IV+ TT + ++ + ++ + Sbjct: 170 IRDDEEKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKII 229 Query: 76 DTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI N K I ++ +I +D+ LV+D+ + L I ++ Sbjct: 230 DTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQDQKLAGRIEEQGRA 289 Query: 133 LILILNKIDCV-KPERLLEQA--EIANKLVFI--EKTFMVSATKGHGCDDVLNY 181 I+++NK D V K + Q E+ +KL F+ K +SA G D++ + Sbjct: 290 CIIVVNKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQRVDNIFEH 343 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR + +IV K TR S + +DT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 84 KDSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS IR + ++ A + LVVD ++ + + K + S + I+ +NK C Sbjct: 65 DDSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNK--C 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + A KL E VSA G G D+L+ + LP Sbjct: 123 ESTTLGISLASEFWKLGLGEPN-PVSAIHGSGTGDLLDLVIGELP 166 >gi|122702367|emb|CAL88374.1| GTPase [Helicobacter pylori] gi|122702395|emb|CAL88388.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|187479888|ref|YP_787913.1| tRNA modification GTPase TrmE [Bordetella avium 197N] gi|123513530|sp|Q2KTI2|MNME_BORA1 RecName: Full=tRNA modification GTPase mnmE gi|115424475|emb|CAJ51029.1| probable tRNA modification GTPase [Bordetella avium 197N] Length = 450 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 15/172 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+N G ++IVT TTR V + + +DT G+ + Sbjct: 222 VVLAGQPNVGKSSLLNALAGDDIAIVTPIAGTTRDKVVQEIFIDGVPLHIVDTAGLRETE 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D+ + I +W I+ AD++ + D+ + D+ + R+ ++ + NKID Sbjct: 282 DTVESIGIARTWKEIERADLILHLQDATAPGDILDVDITARLPARTP-VLAVFNKIDL-- 338 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 L A++A E + +SA +G G +++ L L +A W A+ Sbjct: 339 ---LTSTAQLA------ENSIGISAKQGLGLEELRARL---LQMAGWNPGAE 378 >gi|260441411|ref|ZP_05795227.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae DGI2] gi|291044771|ref|ZP_06570480.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae DGI2] gi|291011665|gb|EFE03661.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae DGI2] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|126651990|ref|ZP_01724182.1| tRNA modification GTPase [Bacillus sp. B14905] gi|126591259|gb|EAZ85368.1| tRNA modification GTPase [Bacillus sp. B14905] Length = 461 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR I+ V+ + + +DT GI +D Sbjct: 228 ILGRPNVGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDI 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ + S ++ AD++ V++ EL L + I + I+I+NK D + Sbjct: 288 VERIGVERSREALRGADLILFVLNYADELTAEDERLFETI--EAMDYIVIINKTDLPQKI 345 Query: 147 RLLEQAEIANK 157 L E+A K Sbjct: 346 NLARVKELAGK 356 >gi|122702739|emb|CAL88559.1| GTPase [Helicobacter pylori] gi|292806494|gb|ADE42377.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|116514958|ref|YP_802587.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285646|sp|Q058F5|MNME_BUCCC RecName: Full=tRNA modification GTPase mnmE gi|116256812|gb|ABJ90494.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 454 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 18/141 (12%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV------RGIV 65 HK+++ N+ +A G N GKS+L+N KVSIVT+ TTR ++ G+ Sbjct: 208 HKNYIFSNTIKIVIA--GPPNVGKSSLLNFLSKEKVSIVTNIPGTTRDVIHKNIWFNGVC 265 Query: 66 SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 E FLDT G+ ++D + I+L+ IK + + L+ D ++ +N ++ +K Sbjct: 266 CE------FLDTAGLQKSQDIIEVIGIKLAKKHIKSCNHIFLMFDVTKKKMIN-NNFIKN 318 Query: 126 IA---KRSSRLILILNKIDCV 143 I K++ + I NKID + Sbjct: 319 IVNNLKKNQNITFIFNKIDLI 339 >gi|15600760|ref|NP_254254.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAO1] gi|107104668|ref|ZP_01368586.1| hypothetical protein PaerPA_01005747 [Pseudomonas aeruginosa PACS2] gi|218894669|ref|YP_002443539.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa LESB58] gi|14195275|sp|Q9HT07|MNME_PSEAE RecName: Full=tRNA modification GTPase mnmE gi|9951908|gb|AAG08952.1|AE004968_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|218774898|emb|CAW30717.1| putative GTPase for tRNA modification and thiophene and furan oxidation [Pseudomonas aeruginosa LESB58] Length = 455 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D K+ + + I AD V LVVD+ + L E + ++ LI NK Sbjct: 278 EDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKA 337 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 D LE E A+ V T +SA G G + + +L Sbjct: 338 DLSTESIGLE--ESADGHV----TITLSARTGAGLELLREHL 373 >gi|254671681|emb|CBA09438.1| putative tRNA modification GTPase [Neisseria meningitidis alpha153] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|189184774|ref|YP_001938559.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Ikeda] gi|189181545|dbj|BAG41325.1| tRNA modification GTP-binding protein ThdF (TrmE) [Orientia tsutsugamushi str. Ikeda] Length = 447 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 8/127 (6%) Query: 21 RSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V A+ G TN GKS+L+N + +IV+ TTR ++ + I+ DT G Sbjct: 215 RHGIVLAITGETNTGKSSLLNYLTMREAAIVSDIPGTTRDVIEAHLDIGGYPIIVRDTAG 274 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILIL 137 I + D + I+ S K++DI L++D+ VN I LL ++ IL++ Sbjct: 275 IRESDDPIEQEGIKRSLLAFKNSDIRILMIDATNMNSVNQTIAHLLNDVYT-----ILVI 329 Query: 138 NKIDCVK 144 NKID V Sbjct: 330 NKIDLVN 336 >gi|169830197|ref|YP_001700355.1| tRNA modification GTPase trmE [Lysinibacillus sphaericus C3-41] gi|205415777|sp|B1HPM3|MNME_LYSSC RecName: Full=tRNA modification GTPase mnmE gi|168994685|gb|ACA42225.1| Probable tRNA modification GTPase trmE [Lysinibacillus sphaericus C3-41] Length = 461 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR I+ V+ + + +DT GI +D Sbjct: 228 ILGRPNVGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDI 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ + S ++ AD++ V++ EL L + I + I+I+NK D + Sbjct: 288 VERIGVERSREALRGADLILFVLNYADELTAEDERLFETI--EAMDYIVIINKTDLPQKI 345 Query: 147 RLLEQAEIANK 157 L E+A K Sbjct: 346 NLARVKELAGK 356 >gi|122701589|emb|CAL88184.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|116620213|ref|YP_822369.1| tRNA modification GTPase TrmE [Candidatus Solibacter usitatus Ellin6076] gi|122255446|sp|Q02A42|MNME_SOLUE RecName: Full=tRNA modification GTPase mnmE gi|116223375|gb|ABJ82084.1| tRNA modification GTPase trmE [Candidatus Solibacter usitatus Ellin6076] Length = 444 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+L NR + +IVT TTR +V + + DT GI Sbjct: 218 TLAIVGRPNVGKSSLFNRLLEQDRAIVTEIPGTTRDVVSETAAIGGIPVKLYDTAGIRET 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ L I S+ I +D+ +V+D R + L IA+ +R +++ NK D Sbjct: 278 EERVESLGIERSYQAIVDSDLALVVLDLTRPVTAEDASL---IARAGARALIVANKCD 332 >gi|292806690|gb|ADE42475.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSQEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|124516564|gb|EAY58072.1| TRNA modification GTPase TrmE [Leptospirillum rubarum] Length = 445 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N+GKS+L NR +G ++V+ TTR ++ G +S + I+ LD+ GI Sbjct: 216 SVLITGPVNSGKSSLFNRLLGDSRALVSDIPGTTRDLLEGRISSEFGDIILLDSAGIRKT 275 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLV----VDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 D K IR + I +V V +DS+ E+ I KR + ++ + NK Sbjct: 276 GDDIEKQGIRRAIKEINDVSLVLWVNSPDMDSNPEIV---------IGKRKTGIVRVWNK 326 Query: 140 IDC 142 D Sbjct: 327 CDL 329 >gi|122701449|emb|CAL88114.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALNL 168 >gi|18075557|emb|CAD11174.1| GTP-binding protein [Helicobacter pylori] gi|122700659|emb|CAL87918.1| GTPase [Helicobacter pylori] gi|122700771|emb|CAL87974.1| GTPase [Helicobacter pylori] gi|122700915|emb|CAL88046.1| GTPase [Helicobacter pylori] gi|122701325|emb|CAL88052.1| GTPase [Helicobacter pylori] gi|122701383|emb|CAL88081.1| GTPase [Helicobacter pylori] gi|122701549|emb|CAL88164.1| GTPase [Helicobacter pylori] gi|122701561|emb|CAL88170.1| GTPase [Helicobacter pylori] gi|122701705|emb|CAL88242.1| GTPase [Helicobacter pylori] gi|122702473|emb|CAL88427.1| GTPase [Helicobacter pylori] gi|122702559|emb|CAL88469.1| GTPase [Helicobacter pylori] gi|122702651|emb|CAL88515.1| GTPase [Helicobacter pylori] gi|122702659|emb|CAL88519.1| GTPase [Helicobacter pylori] gi|122702723|emb|CAL88551.1| GTPase [Helicobacter pylori] gi|122702775|emb|CAL88577.1| GTPase [Helicobacter pylori] gi|122702817|emb|CAL88598.1| GTPase [Helicobacter pylori] gi|122702861|emb|CAL88620.1| GTPase [Helicobacter pylori] gi|242255846|gb|ACS88907.1| GTPase [Helicobacter pylori] gi|242255942|gb|ACS88955.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|83944969|ref|ZP_00957335.1| tRNA modification GTPase [Oceanicaulis alexandrii HTCC2633] gi|83851751|gb|EAP89606.1| tRNA modification GTPase [Oceanicaulis alexandrii HTCC2633] Length = 443 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 7/119 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G NAGKSTL+N +IVT TTR +V + ++ DT G+ +A Sbjct: 217 SIALIGEPNAGKSTLLNALARRDAAIVTDIPGTTRDVVEVRLVLAGFPVIVADTAGLRDA 276 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-LKVNIHDLLKEIAKRSSRLILILNKID 141 D +R + ++AD+ VVD RE L + + L + LILNK+D Sbjct: 277 ADQVEAEGVRRALDRAQNADLRLGVVDVSRETLPAKLLETLTDADA------LILNKMD 329 >gi|239818256|ref|YP_002947166.1| tRNA modification GTPase TrmE [Variovorax paradoxus S110] gi|239804833|gb|ACS21900.1| tRNA modification GTPase TrmE [Variovorax paradoxus S110] Length = 471 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ VQ ++ G V + G NAGKS+L+N GA+++IV+ T Sbjct: 206 GQLAKLQAQLAAVQQRAKQGALLREGIKVVIAGQPNAGKSSLLNALAGAELAIVSAVAGT 265 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 TR +V + + +DT G+ + D ++ + +W I+ AD V + D R Sbjct: 266 TRDVVSETIQIHGVPLHVVDTAGLRESSDEVEQIGVARAWGQIEGADAVLFLHDLTR 322 >gi|156973384|ref|YP_001444291.1| GTP-binding protein EngA [Vibrio harveyi ATCC BAA-1116] gi|166225933|sp|A7MZE5|DER_VIBHB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|156524978|gb|ABU70064.1| hypothetical protein VIBHAR_01071 [Vibrio harveyi ATCC BAA-1116] Length = 498 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ M S + I AD+V +VD L + + + K +L++NKID Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVNKIDG 123 Query: 143 VKPE 146 + + Sbjct: 124 IDAD 127 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKSTL NR +G + +V TTR + + + V +DT G+ Sbjct: 212 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRG 271 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++V LV+D+ + LL ++L +NK D Sbjct: 272 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 331 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + E + + E+ +L F++ + +SA G G Sbjct: 332 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGV 368 >gi|122702493|emb|CAL88437.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLSRERIAITSDLAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702539|emb|CAL88459.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALDL 168 >gi|99905849|gb|ABF68619.1| YphC [Helicobacter pylori] gi|115605761|gb|ABJ15862.1| YphC [Helicobacter pylori] gi|122700601|emb|CAL87889.1| GTPase [Helicobacter pylori] gi|122700603|emb|CAL87890.1| GTPase [Helicobacter pylori] gi|122700611|emb|CAL87894.1| GTPase [Helicobacter pylori] gi|122700613|emb|CAL87895.1| GTPase [Helicobacter pylori] gi|122700617|emb|CAL87897.1| GTPase [Helicobacter pylori] gi|122702639|emb|CAL88509.1| GTPase [Helicobacter pylori] gi|122702857|emb|CAL88618.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ Sbjct: 7 SKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM- 65 Query: 82 NAKDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLIL 135 AKD+ I+ L+ + +D++ VVD S ++K L +E+ K + L Sbjct: 66 -AKDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFL 119 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 120 VINKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|51892817|ref|YP_075508.1| GTP-binding protein [Symbiobacterium thermophilum IAM 14863] gi|81826113|sp|Q67NS9|DER_SYMTH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51856506|dbj|BAD40664.1| GTP-binding protein [Symbiobacterium thermophilum IAM 14863] Length = 471 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR ++ +IV + TR + + +DT GI Sbjct: 4 IVAIVGRPNVGKSTLFNRLTQSRHAIVEDQPGVTRDRLYADTEWNGRTLTLVDTGGIQLD 63 Query: 84 K--DSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILN 138 K D+ + R + I+ AD++ VVD + + + DLL+ ++ +I+ +N Sbjct: 64 KEGDTIEAHVTRQAELAIREADVIIFVVDVTDGVTAPDLEVADLLR---RQRKPVIVAVN 120 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K++ +K E + + +E VSA G G D+L+ + + LP Sbjct: 121 KVENLK----REDEALEFWALGLEPLINVSAEHGLGTGDLLDAVVAALP 165 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 72/144 (50%), Gaps = 6/144 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+LVN +G + IV+ TTR + +V E + + +DT G+ Sbjct: 180 VAVIGRPNVGKSSLVNAILGEERVIVSDVPGTTRDAIDVLVERGEDKFLLIDTAGMRRKA 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ + + + ++ A +V +V+D+ + + + I+++NK D Sbjct: 240 RVEEAVERYSVMRALRAVERAQVVLIVIDAQDGVTEQDQRIAGYAHENGKACIVVVNKWD 299 Query: 142 CV-KPERLLEQ--AEIANKLVFIE 162 + K +R + + E+ +L F++ Sbjct: 300 LIEKDDRTMAKMTEEVRMRLAFMD 323 >gi|86141545|ref|ZP_01060091.1| tRNA modification GTPase [Leeuwenhoekiella blandensis MED217] gi|85832104|gb|EAQ50559.1| tRNA modification GTPase [Leeuwenhoekiella blandensis MED217] Length = 471 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 15/163 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + +S F+DT GI Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETV 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-----LILILNK 139 D L I+ ++ I A +V +++S + K EI K +R L+L+ NK Sbjct: 284 DVIEGLGIKKTFEKIAQAQVVLYLINSEK-FKDQAELFTVEIQKIRNRFPDKPLVLVANK 342 Query: 140 IDCVKPERLLEQAEIANKLVFI------EKTFMVSATKGHGCD 176 ID + EQ I +L + ++SA G G + Sbjct: 343 IDHLSE---TEQESINKQLAALLSEGNKSAVLLISAKTGTGVE 382 >gi|240013240|ref|ZP_04720153.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae DGI18] gi|240015686|ref|ZP_04722226.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA6140] gi|240079821|ref|ZP_04724364.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA19] gi|240116977|ref|ZP_04731039.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID1] gi|240120311|ref|ZP_04733273.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID24-1] gi|268595964|ref|ZP_06130131.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae FA19] gi|268602658|ref|ZP_06136825.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID1] gi|268549752|gb|EEZ44771.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae FA19] gi|268586789|gb|EEZ51465.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID1] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|254786612|ref|YP_003074041.1| GTP-binding protein EngA [Teredinibacter turnerae T7901] gi|259645886|sp|C5BLV6|DER_TERTT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|237684664|gb|ACR11928.1| GTP-binding protein EngA [Teredinibacter turnerae T7901] Length = 464 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 6/183 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D R +A++G N GKSTLVNR +G + +V TTR + E +DT Sbjct: 172 DAERRLKMAIIGRPNVGKSTLVNRMLGEERVVVFDMPGTTRDSIYIDYERDEKHYTLIDT 231 Query: 78 PGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ N K + K I + I A++V LV+D+ + LL + L+ Sbjct: 232 AGVRRRKNVKLTVEKFSIIKTLQAINDANVVILVMDASEGIVDQDLHLLGHAIESGRALV 291 Query: 135 LILNKIDCVKPE-RLLEQAEIANKLVFIEKT--FMVSATKGHGCDDVLNYLCSTLPLAPW 191 + LNK D ++ + + + E+ +L F++ +SA G G ++ + A Sbjct: 292 VALNKWDGLEDDHKSYVKTELQRRLSFVDYADLHFISALHGTGVGNLYKSVEKAYQAATE 351 Query: 192 VYS 194 YS Sbjct: 352 KYS 354 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 20/188 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + +IV + TR G + + + +DT GI Sbjct: 4 TIALVGRPNVGKSTLFNRLTKTRDAIVANFAGLTRDRKYGDAEFEGKRFIVVDTGGISGD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILN 138 ++ +M S I +DI+ +VD +H + ++ H L+ + K + L+ N Sbjct: 64 EEGIDSVMAEQSLQAIAESDIILFLVDCRDGLTHVDSQIAQH--LRTLHKPT---FLVAN 118 Query: 139 KIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 K+D + ++A F + + V+A G G + ++ + + + + A Sbjct: 119 KVDG-------QNHDLAIAPFFELGLGEVHSVAAAHGRGVNTLMATVLADIAVESEADEA 171 Query: 196 DQISDLPM 203 D L M Sbjct: 172 DAERRLKM 179 >gi|189218239|ref|YP_001938881.1| GTP-binding protein protease modulator [Methylacidiphilum infernorum V4] gi|189185097|gb|ACD82282.1| GTP-binding protein protease modulator [Methylacidiphilum infernorum V4] Length = 432 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 15/174 (8%) Query: 15 FVQDNSRSG----CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 F+Q +SR LVG TNAGKSTL NR A V + T +R Sbjct: 188 FIQRSSRQKFPWPTACLVGYTNAGKSTLFNRLTNAHVLVEDKLFATLDPTIRLFEFSGGY 247 Query: 71 QIVFLDTPGIFNAKDSYHKL-MIRLSWSTIKHADIVCLVVD-SH--RELKVN-IHDLLKE 125 +I DT G F K +H + + + + AD++ +VD SH E ++N ++ +L++ Sbjct: 248 KIFLSDTVG-FIQKLPHHLIESFKATLEEVTEADLLIHLVDVSHPWAETQINEVNKVLEQ 306 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 I IL+ NKID V L I ++ + +SA G GC+++L Sbjct: 307 IGAIHKPTILVWNKIDLVNTSGL-----IKRRIEEYPGSVPISAATGFGCENLL 355 >gi|93004280|gb|ABE97060.1| YphC [Helicobacter pylori] gi|122700815|emb|CAL87996.1| GTPase [Helicobacter pylori] gi|122700849|emb|CAL88013.1| GTPase [Helicobacter pylori] gi|122700873|emb|CAL88025.1| GTPase [Helicobacter pylori] gi|122702547|emb|CAL88463.1| GTPase [Helicobacter pylori] gi|292806580|gb|ADE42420.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452829|emb|CBL87850.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|319786414|ref|YP_004145889.1| GTP-binding proten HflX [Pseudoxanthomonas suwonensis 11-1] gi|317464926|gb|ADV26658.1| GTP-binding proten HflX [Pseudoxanthomonas suwonensis 11-1] Length = 444 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL N GA T VR I S +V DT G + Sbjct: 200 VALVGYTNAGKSTLFNALTGADAYAADQLFATLDPTVRRI-SLPGGSVVLADTVGFV--R 256 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ VVD+ L+ + +L E+ +L+ N Sbjct: 257 DLPHELVAAFRSTLSEAREADLLLHVVDAADPLREERIAQVDSVLSEVGAGELPQLLVFN 316 Query: 139 KIDCVK 144 KID ++ Sbjct: 317 KIDRIE 322 >gi|307721584|ref|YP_003892724.1| tRNA modification GTPase trmE [Sulfurimonas autotrophica DSM 16294] gi|306979677|gb|ADN09712.1| tRNA modification GTPase trmE [Sulfurimonas autotrophica DSM 16294] Length = 445 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 7/137 (5%) Query: 12 HKDFVQDNSRSGC-----VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 K + SR G VA++G N GKS+L+N + +IV+ TTR + V Sbjct: 199 EKTLITSKSREGLMQGFRVAIIGKPNVGKSSLLNTLLNYNRAIVSDIAGTTRDTIEEQVK 258 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I +DT GI + D ++ I+ S I +DIV + D R+ +L+ I Sbjct: 259 IGTHLIRIVDTAGIRESNDEIERIGIQRSLEAINESDIVIALFDGSRKADEEDEQILELI 318 Query: 127 AKRSSR--LILILNKID 141 + + ++++ NKID Sbjct: 319 KQNRDKKEMLVVKNKID 335 >gi|304388556|ref|ZP_07370656.1| tRNA modification GTPase TrmE [Neisseria meningitidis ATCC 13091] gi|304337453|gb|EFM03622.1| tRNA modification GTPase TrmE [Neisseria meningitidis ATCC 13091] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|240114777|ref|ZP_04728839.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID18] gi|268600426|ref|ZP_06134593.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID18] gi|268584557|gb|EEZ49233.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID18] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|172040561|ref|YP_001800275.1| putative GTP-binding protein [Corynebacterium urealyticum DSM 7109] gi|171851865|emb|CAQ04841.1| putative GTP-binding protein [Corynebacterium urealyticum DSM 7109] Length = 506 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 73/174 (41%), Gaps = 14/174 (8%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D S VA+ G TNAGKS+L+N GA V + T R ++F D Sbjct: 262 RDASAVPQVAIAGYTNAGKSSLINALTGAGVLVEDALFATLDPTTRRAELADGRSVIFSD 321 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH--------RELKVNIHDLLKEIAK 128 T G + R + + AD+V VVD R + I +++ E + Sbjct: 322 TVGFVRHLPTQLVEAFRSTLEEVMAADVVLHVVDGSDPFPLEQIRSVNTVISEIVAESGQ 381 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + I+++NKID P L E N +VF VSA G G D++ L Sbjct: 382 DAPPEIMVVNKIDKADPLVLAELRHKLNDVVF------VSAHTGEGIDELETRL 429 >gi|161833721|ref|YP_001597917.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri GWSS] gi|293977831|ref|YP_003543261.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri DMIN] gi|205415809|sp|A8Z5X0|MNME_SULMW RecName: Full=tRNA modification GTPase mnmE gi|152206211|gb|ABS30521.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri GWSS] gi|292667762|gb|ADE35397.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri DMIN] Length = 454 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 V+++G N GKSTL N+ + + SIV++ TTR+ + + + F+DT GI N Sbjct: 222 VSIIGCPNVGKSTLFNKLLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINNNT 281 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRE 114 KD KL I+ ++S I +D++ V D E Sbjct: 282 KDYIEKLGIKKTYSKINKSDLILYVFDDLNE 312 >gi|59802408|ref|YP_209120.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA 1090] gi|194100062|ref|YP_002003202.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae NCCP11945] gi|239998058|ref|ZP_04717982.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae 35/02] gi|240112030|ref|ZP_04726520.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae MS11] gi|240124802|ref|ZP_04737688.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae SK-92-679] gi|254492836|ref|ZP_05106007.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae 1291] gi|268593908|ref|ZP_06128075.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae 35/02] gi|268598084|ref|ZP_06132251.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae MS11] gi|268683378|ref|ZP_06150240.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae SK-92-679] gi|293397863|ref|ZP_06642069.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae F62] gi|81311136|sp|Q5F529|MNME_NEIG1 RecName: Full=tRNA modification GTPase mnmE gi|226704783|sp|B4RRB9|MNME_NEIG2 RecName: Full=tRNA modification GTPase mnmE gi|59719303|gb|AAW90708.1| putative thiophene and furan oxidation protein [Neisseria gonorrhoeae FA 1090] gi|193935352|gb|ACF31176.1| tRNA modification GTPase [Neisseria gonorrhoeae NCCP11945] gi|226511876|gb|EEH61221.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae 1291] gi|268547297|gb|EEZ42715.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae 35/02] gi|268582215|gb|EEZ46891.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae MS11] gi|268623662|gb|EEZ56062.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae SK-92-679] gi|291611809|gb|EFF40878.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae F62] gi|317165500|gb|ADV09041.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae TCDC-NG08107] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|317403345|gb|EFV83858.1| GTP-binding protein HflX [Achromobacter xylosoxidans C54] Length = 368 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 15/174 (8%) Query: 20 SRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +R G V+LVG TNAGKSTL N A T + R I E +V DT Sbjct: 185 ARGGALSVSLVGYTNAGKSTLFNALTRADTYAADQLFATLDTTTRRIWIEGAGNVVVSDT 244 Query: 78 PGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSS 131 G +D H L+ R + HAD++ VVD+ R+ ++ ++ +L EI + Sbjct: 245 VGFI--RDLPHDLIAAFRATLEETVHADLLLHVVDAASPQRDEQIFEVNKVLAEIGAAAI 302 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 IL+ NKID E E+ + I + F VSAT+ G D + + T Sbjct: 303 PTILVYNKIDRAGLEPRAER----DAHGTIARVF-VSATERAGLDALRGAIAET 351 >gi|294815506|ref|ZP_06774149.1| ATP/GTP-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326443857|ref|ZP_08218591.1| ATP/GTP-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294328105|gb|EFG09748.1| ATP/GTP-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 496 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + DT G Sbjct: 276 SVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRH 335 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + R + + +D++ VVD SH E + ++++++ I+++NK Sbjct: 336 LPHHLVEAFRSTMEEVGESDLILHVVDGSHPAPEEQLAAVREVIRDVGAVDVPEIVVVNK 395 Query: 140 IDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLCSTLP 187 D P + +L+ +E+ + VSA G G +++L + LP Sbjct: 396 ADAADP-------LVLQRLMRVERHSIAVSARTGEGIEELLRLIDDELP 437 >gi|255292050|dbj|BAH90531.1| GTP-binding protein EngA [uncultured bacterium] Length = 466 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKSTL+NR +G I + TTR VR V + LDT G+ Sbjct: 180 AVVGRPNAGKSTLINRLLGQSRLIESPLPGTTRDCVRVPVQLDGRDCLLLDTAGLRRRAQ 239 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNKI 140 ++ K + + I A +V LV+D EL + D + + +R L++ +NK Sbjct: 240 VHEAIEKFSVVKTLQAIDLAQVVVLVIDG--ELGIGEQDARIAGQALQRGRALVVAVNKA 297 Query: 141 DCV-KPERLLEQAEIANKLVFI--EKTFMVSATKGHG 174 D + R + E+ +L FI +SA G G Sbjct: 298 DTLDDSARAALRREVERRLPFIGFAPVEFISAKSGRG 334 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 4/166 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL NR + ++V TR + G + +DT G+ Sbjct: 4 VIALLGRPNVGKSTLFNRLTRTRDALVADFPGVTRDRLVGSGQLGDRPFWVVDTGGLLGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + AD V LVVD+ + + + + + + +NK + + Sbjct: 64 DSQLSGKVSDQALAAAQEADAVLLVVDARAGPTADDRTIAETLRTLGRPVRVAVNKAEHL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 PE L +AE +L E T +SA+ GHG D+L+ + P A Sbjct: 124 NPE--LVRAEFF-ELGLGEPT-PISASHGHGVRDLLDTVLDAFPPA 165 >gi|240127321|ref|ZP_04739982.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae SK-93-1035] gi|268685687|ref|ZP_06152549.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae SK-93-1035] gi|268625971|gb|EEZ58371.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae SK-93-1035] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|238926984|ref|ZP_04658744.1| GTP-binding protein EngA [Selenomonas flueggei ATCC 43531] gi|238885218|gb|EEQ48856.1| GTP-binding protein EngA [Selenomonas flueggei ATCC 43531] Length = 441 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 6/178 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N+ +VSIV TR + + +DT GI F+ Sbjct: 5 IVAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLTHEFTIIDTGGIEFD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + M + ++ AD++ +VD L + ++ + + + +IL +NKID Sbjct: 65 ESDHILRSMRSQAELAMEEADVILFLVDGRSGLTTSDEEVARLLRRTKKPVILAVNKIDS 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW-VYSADQIS 199 + E L+ + +SA+ D+L+ + + P P V D+I+ Sbjct: 125 FEREALIYDFYSLG----LGDPIPISASNAMNLGDLLDAVVAAFPTEPAEVQETDEIA 178 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 4/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+LVNR +G + IV+ TTR + ++ ++ + +DT G+ Sbjct: 178 AIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTKDGAKYLLIDTAGMRRK 237 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + S I A +V +V+++ + + + + +I+++NK Sbjct: 238 GKITLPVERYSVMRSLRAIDRAGVVLMVINAAEGILEQDTKIAGYVHESGKGVIIVVNKW 297 Query: 141 DCVKPER 147 D PE+ Sbjct: 298 DIF-PEK 303 >gi|289207923|ref|YP_003459989.1| ribosome-associated GTPase EngA [Thioalkalivibrio sp. K90mix] gi|288943554|gb|ADC71253.1| ribosome-associated GTPase EngA [Thioalkalivibrio sp. K90mix] Length = 484 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 8/155 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTLVNR +G + + T TTR + S +DT G+ + Sbjct: 201 VAIVGRPNVGKSTLVNRILGDERVVATDVAGTTRDSIFVPFSRDGQDYTLIDTAGV-RRR 259 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+++ + S I+ A +V LV+D+ L LL + L+L +NK Sbjct: 260 ARVHEVIEKFSVIKTLQAIEAAHVVILVMDAQAGLSEQDAHLLGLVIDSGRALVLAVNKW 319 Query: 141 DCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKG 172 D + P ER + ++ +L F+ + ++SA G Sbjct: 320 DGMAPEERERVRDDLDRRLGFVNFARLRLISALHG 354 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 53/123 (43%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N+ ++ ++V TR GI + + +DT G+ Sbjct: 4 VIALVGRPNVGKSTLFNQLTRSRDALVADVAGLTRDRQYGIGKVGDFPYLVVDTGGLSGE 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M + + AD V +VD+ L + ++ + +++NK D + Sbjct: 64 GAEMDRAMAEQTQRAVAEADHVLFLVDARDGLTPQDQAIADQLRSAGVKARVVVNKTDGL 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|122702451|emb|CAL88416.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGREVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALDL 168 >gi|16082451|ref|NP_394940.1| GTP-binding protein [Thermoplasma acidophilum DSM 1728] gi|10640829|emb|CAC12607.1| GTP-binding protein [Thermoplasma acidophilum] Length = 360 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H F S VALVG N GKS+L+NR ++ I + T + I GI+ K ++ Sbjct: 50 HSGFAVPKSGDATVALVGFPNVGKSSLLNRLTNSESEIGDYAFTTLQPIP-GILEYKGAE 108 Query: 72 IVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 I LD PGI NA SY R S ++ AD++ +V D Sbjct: 109 IQILDLPGIIENA--SYGSARGREILSAVRAADLIVIVTD 146 >gi|330827243|ref|YP_004390546.1| tRNA modification GTPase mnmE [Alicycliphilus denitrificans K601] gi|329312615|gb|AEB87030.1| tRNA modification GTPase mnmE [Alicycliphilus denitrificans K601] Length = 465 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 226 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRESA 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 D ++ I +W I AD V + D R Sbjct: 286 DEVERIGIARAWDEITQADAVLFLHDLTR 314 >gi|327438167|dbj|BAK14532.1| predicted GTPase [Solibacillus silvestris StLB046] Length = 461 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR I+ V+ + + +DT GI +D Sbjct: 228 ILGRPNVGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDI 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ + S +K AD++ LV++ EL L + I ++ I+++NK D + Sbjct: 288 VERIGVERSREALKDADLILLVLNYGEELTEEDERLFETI--QAMDYIVVVNKTDIERKI 345 Query: 147 RLLEQAEIANK 157 L E+A K Sbjct: 346 DLNRVHELAGK 356 >gi|303257596|ref|ZP_07343608.1| GTP-binding protein HflX [Burkholderiales bacterium 1_1_47] gi|302859566|gb|EFL82645.1| GTP-binding protein HflX [Burkholderiales bacterium 1_1_47] Length = 373 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 16/176 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR V T + R + ++V DT G Sbjct: 190 TVALVGYTNAGKSTLFNRLTRGGVYAADQLFATLDTTARRCFVGGDVEVVLSDTVGFI-- 247 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRLILIL 137 + H+L+ + + AD++ VVDS E ++ +L+EI + +L+ Sbjct: 248 RGLPHQLIEAFKSTLDEAAQADLLLHVVDSSTPAREEQMTEVNKVLEEIGAKDIPQLLVF 307 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD---DVLNYLCSTLPLAP 190 NKID + AE K +SA G G D D + + P P Sbjct: 308 NKIDLEGRSPFITCAEDGTP-----KAVGISAANGEGIDLLKDAIRQIAEKEPEEP 358 >gi|255693537|ref|ZP_05417212.1| ribosome-associated GTPase EngA [Bacteroides finegoldii DSM 17565] gi|260620675|gb|EEX43546.1| ribosome-associated GTPase EngA [Bacteroides finegoldii DSM 17565] Length = 437 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 18/145 (12%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKSK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S I+ +D+ L++D+ R ++ ++ I K L++++NK Sbjct: 239 VNEDLEYYSVI--RSIRAIEGSDVCILMLDATRGIESQDLNIFSLIQKNQKGLVVVINKW 296 Query: 141 DCVKPERLLEQAEIANKLVFIEKTF 165 D V+ +K V ++KTF Sbjct: 297 DLVE-----------DKSVKVQKTF 310 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 13/168 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEAAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 N+ D + + + + ++ AD++ VVD + DL ++A + S +I++ Sbjct: 62 VNSDDIFEEEIRKQVLLAVEEADVILFVVDVMN----GVTDLDMQVAAILRRAKSPVIMV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 NK D L A KL + + VSA G G D+++ + S Sbjct: 118 ANKTDN---HELQYNAPEFYKL-GLGDPYCVSAITGSGTGDLMDLIVS 161 >gi|161869216|ref|YP_001598382.1| tRNA modification GTPase TrmE [Neisseria meningitidis 053442] gi|205415782|sp|A9M0N5|MNME_NEIM0 RecName: Full=tRNA modification GTPase mnmE gi|161594769|gb|ABX72429.1| thiophene and furan oxidation protein [Neisseria meningitidis 053442] gi|261393317|emb|CAX50949.1| tRNA modification GTPase TrmE [Neisseria meningitidis 8013] gi|308390087|gb|ADO32407.1| tRNA modification GTPase TrmE [Neisseria meningitidis alpha710] gi|325129416|gb|EGC52248.1| tRNA modification GTPase TrmE [Neisseria meningitidis OX99.30304] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 7/137 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 Query: 117 VNIHDLLKEIAKRSSRL 133 +L + R+ Sbjct: 311 EKTRAILDALPSELKRI 327 >gi|126724526|ref|ZP_01740369.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2150] gi|126705690|gb|EBA04780.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2150] Length = 430 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VGA N+GKSTL+N G + +I + TTR ++ + + + LDT G+ Sbjct: 217 VAIVGAPNSGKSTLLNALAGREAAITSEIAGTTRDVIEVRMDLRGLPVTILDTAGLRKTD 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH--DLLK 124 D L I+L+ AD+ + D L V I D+L+ Sbjct: 277 DHVEGLGIQLAEKRAAQADLRVFLDDDPSALSVEIQSGDILR 318 >gi|122701337|emb|CAL88058.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 19/170 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID K ER + I K+F +S + G +++ + + L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNAL 166 >gi|122701415|emb|CAL88097.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|134299122|ref|YP_001112618.1| HSR1-like GTP-binding protein [Desulfotomaculum reducens MI-1] gi|134051822|gb|ABO49793.1| GTP-binding protein, HSR1-related protein [Desulfotomaculum reducens MI-1] Length = 421 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 15/189 (7%) Query: 5 EITFFNEHKDFVQDNSRS---GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ H+ ++ + +S V+LVG TNAGKSTL+ GA + + T Sbjct: 181 ELKEVQRHRSLLRKSRKSEPLPIVSLVGYTNAGKSTLLKSLTGADILVEDKLFATLDPTT 240 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIH 120 R I ++ DT G + R + ++ +D++ +VD SH + I Sbjct: 241 RRISLPNNDNVLLTDTVGFIQNLPHHLVAAFRATLEEVQESDLLLHIVDASHPNYEGQIR 300 Query: 121 ---DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 +L+ + I++ NKID VK + + E N V+I SAT G G D Sbjct: 301 AVETVLESLHVLDKPSIMVFNKIDMVKDVQEIPFTE--NPRVYI------SATSGEGSDQ 352 Query: 178 VLNYLCSTL 186 +L+ + L Sbjct: 353 LLDMIAGVL 361 >gi|299530922|ref|ZP_07044336.1| tRNA modification GTPase TrmE [Comamonas testosteroni S44] gi|298721143|gb|EFI62086.1| tRNA modification GTPase TrmE [Comamonas testosteroni S44] Length = 475 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ ++ Sbjct: 233 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSD 292 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 D ++ I +W I AD V + D R Sbjct: 293 DEVERIGIARAWDEIAAADAVLFLHDLTR 321 >gi|319765051|ref|YP_004128988.1| tRNA modification gtpase trme [Alicycliphilus denitrificans BC] gi|317119612|gb|ADV02101.1| tRNA modification GTPase TrmE [Alicycliphilus denitrificans BC] Length = 465 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 226 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRESA 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 D ++ I +W I AD V + D R Sbjct: 286 DEVERIGIARAWDEITQADAVLFLHDLTR 314 >gi|122701333|emb|CAL88056.1| GTPase [Helicobacter pylori] gi|122702713|emb|CAL88546.1| GTPase [Helicobacter pylori] gi|292806502|gb|ADE42381.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|122701491|emb|CAL88135.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDTILNALNL 168 >gi|109946790|ref|YP_664018.1| tRNA modification GTPase TrmE [Helicobacter acinonychis str. Sheeba] gi|122973443|sp|Q17ZA7|MNME_HELAH RecName: Full=tRNA modification GTPase mnmE gi|109714011|emb|CAJ99019.1| thiophene and furan oxidizer [Helicobacter acinonychis str. Sheeba] Length = 450 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 78/149 (52%), Gaps = 4/149 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G ++++G NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIIGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DI+ V D + L+ + Sbjct: 253 EEVIELQGHKVRLIDTAGIRESVDKIERLGIEKSLKSLENCDIILSVFDLSKPLEKEDFN 312 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLE 150 ++ + + I++LNK D + P+ LE Sbjct: 313 IIDALNRTKKPCIVVLNKND-LSPKLELE 340 >gi|86158079|ref|YP_464864.1| GTP-binding protein EngA [Anaeromyxobacter dehalogenans 2CP-C] gi|85774590|gb|ABC81427.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 465 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 10/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKST VN +G + +V+ TTR + +V+ K + V DT GI + Sbjct: 198 LAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGRRFVVTDTAGIRRKR 257 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 K+ ++R + + A++V ++D+ LL +A++ L++++NK Sbjct: 258 SIAQKVESFSVVR-AMKAMDQAEVVACLLDATEAGVEQDARLLGLVAEKGKALVIVVNKW 316 Query: 141 DCVKPERLLE---QAEIANKLVFIEKTFM--VSATKGHGCDDVL 179 D + E + + E+ +L F+ M VSA + G VL Sbjct: 317 DIAEREGATQDWYRKELTKRLPFVAFAPMLFVSAKERRGVHRVL 360 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR G +V+IV TR V + + +DT G Sbjct: 7 VVALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGF--E 64 Query: 84 KDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 +S +LM ++ + + A +V LVVD R+ ++ + E+ +R+ + L + +NK Sbjct: 65 PESRDRLMSQVREQAQLAVDEASVVVLVVDG-RDGLTSLDRAVAELLRRAGKPLFVAVNK 123 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 +D + E + AE L F E +SA G G +++ + Sbjct: 124 VDTARTEEDVPLAEFYG-LGFGE-VHALSAEHGRGVSGLVDAIV 165 >gi|4467653|emb|CAB37778.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 19/171 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ AK Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVECLDTGGM--AK 67 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILN 138 D+ I+ L+ + +D++ VVD S +LK L +E+ K + L++N Sbjct: 68 DALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVIN 122 Query: 139 KIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID K ER + + K+F +S + G +++ + S L L Sbjct: 123 KIDTDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNL 168 >gi|42523421|ref|NP_968801.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100] gi|39575627|emb|CAE79794.1| probable GTP-binding protein [Bdellovibrio bacteriovorus HD100] Length = 449 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKSTL N + ++V ++ TR I+ V Q +DT GI A Sbjct: 13 VAIIGRPNVGKSTLFNIITETRKAVVKNQAGVTRDIMIEPVDIWGKQFDLIDTGGITEAG 72 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + KL+ + D++ V+D L D+++ + +L++NK+D + Sbjct: 73 DIFSKLIKEQVTEFLHSVDLIVAVMDGRVGLVPEDRDIIRVAKQTGKPFLLVINKVDSDQ 132 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + + + A+ F S + G ++L ++ +P P Sbjct: 133 DQDMAK----ADFYEFGVDVVAASFEQRRGLAEILEWVVKQIPENP 174 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 9/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS++ N +G IV+ TT V + + +DT G+ + Sbjct: 183 IAIVGKPNVGKSSICNAILGYNRMIVSDIAGTTIDSVDSPFVYNDKKYTLVDTAGLRRSA 242 Query: 85 DSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 L I ++ + I+ ADIV L+VD +++ I + +I++ NK D Sbjct: 243 KREEDLEIISAFKSQEAIRRADIVLLMVDGTVGPTDQDARIMQAILEDHKGVIVVANKSD 302 Query: 142 CVKPE------RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E EQ E SA G+G +D+ + Sbjct: 303 LGGKEVPEYRKTFREQVERVFHFFTDVHIVFTSAKTGYGLEDLFEMI 349 >gi|125974571|ref|YP_001038481.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405] gi|125714796|gb|ABN53288.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405] Length = 582 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 15 FVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 F + +R+ +ALVG TNAGKSTL+NR + V T R + Sbjct: 349 FRESRTRNAIPTIALVGYTNAGKSTLMNRLCESNVLAEDKLFATLDPTTRSFRLSDGREA 408 Query: 73 VFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRE-----LKVNIHDLLKE 125 + +DT G + H+L+ + + +AD++ VVD+ E +KV ++D+L+ Sbjct: 409 LLIDTVGFI--RKLPHELVEAFKSTLEEAVYADMLIHVVDASNEEAEEQVKV-VNDILES 465 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + + +I+ LNK+D VK L + ++ F +SA G G D +L + Sbjct: 466 LGAANKPVIMALNKMDMVKGGLRLAISNPNGRI------FEISAVTGQGIDAMLEGIREM 519 Query: 186 LP 187 LP Sbjct: 520 LP 521 >gi|312144699|ref|YP_003996145.1| tRNA modification GTPase TrmE [Halanaerobium sp. 'sapolanicus'] gi|311905350|gb|ADQ15791.1| tRNA modification GTPase TrmE [Halanaerobium sp. 'sapolanicus'] Length = 464 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 8/118 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N F+ K +IVT TTR ++ V+ K + +DT GI D Sbjct: 231 IVGKPNVGKSSLLNYFLEEKRAIVTDIPGTTRDVIEEYVNLKGIPLKIIDTAGIRETADK 290 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + + AD+V ++D + L + I+ L+K+ +I+I+NK D Sbjct: 291 VEKIGVERTRKSAEKADLVLFMLDISQGLTEEDLQIYKLIKD-----KPVIVIVNKTD 343 >gi|304406963|ref|ZP_07388617.1| ribosome-associated GTPase EngA [Paenibacillus curdlanolyticus YK9] gi|304343950|gb|EFM09790.1| ribosome-associated GTPase EngA [Paenibacillus curdlanolyticus YK9] Length = 440 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A+VG N GKST+ NR +G +++IV K TR + G +DT GI + Sbjct: 5 VIAIVGRPNVGKSTIFNRVIGDRLAIVEDKPGVTRDRIYGTGEWNGRAFSIVDTGGIEID 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKID 141 +D K + + ++ AD++ +VD+ + + D + ++ RS + I++ +NK+D Sbjct: 65 GEDEIMKSVRMQAELAVEEADVIIFMVDAKAGM-THADDEVAQMLFRSRKPIVVAVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R+ + E + +S + G G D+L+ LP Sbjct: 124 NFN--RMDDVYEFYG--LGFGTPVAISGSHGTGIGDLLDAAVEKLP 165 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL+G N GKS+LVN +G + IV+ TTR + + + V +DT G+ Sbjct: 179 VALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAIDTPFEKDGQRYVLIDTAGMRKRG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 Y K + S I+ AD+V ++++ E +I E K S I ++N Sbjct: 239 KVYETTEKYSVMRSLKAIERADVVLILINGEEGIIEQDKHIAGYAHEAGKAS---IFVVN 295 Query: 139 KIDCVK 144 K D V+ Sbjct: 296 KWDAVE 301 >gi|292806414|gb|ADE42337.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806504|gb|ADE42382.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|187778884|ref|ZP_02995357.1| hypothetical protein CLOSPO_02479 [Clostridium sporogenes ATCC 15579] gi|187772509|gb|EDU36311.1| hypothetical protein CLOSPO_02479 [Clostridium sporogenes ATCC 15579] Length = 439 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 5/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 VA+VG N GKSTL N+ G +++IV TR + + +DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D M R + I+ A+++ +VD L ++ + + K ++L++NKID + Sbjct: 66 EDIIISQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 K E E N + I +S+++ G D+L+ Sbjct: 126 KDED--NAYEFYN--LGIGDPVTISSSQALGLGDMLD 158 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 79/157 (50%), Gaps = 8/157 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKS+L+N+ +G + IV++ TTR + V+ + +DT G+ Sbjct: 179 IAFVGKPNVGKSSLINKLLGEERLIVSNIPGTTRDSIDSYVNTDFGEFTLIDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + ++++I+ AD+ L++D+ + ++ + +++I+NK D Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQKIIGYAHDLNKAILVIVNKWD 298 Query: 142 CV-KPERLLE--QAEIANKLVFI--EKTFMVSATKGH 173 V K ++ ++ + E+ L F+ K +SA G Sbjct: 299 LVEKDDKTMDKFKKELKVNLSFMAYAKYLFISAKTGQ 335 >gi|317452851|emb|CBL87861.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNVLNL 168 >gi|317452815|emb|CBL87843.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 +D+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 RDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|292806448|gb|ADE42354.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISTLIDAILNALNL 168 >gi|167748063|ref|ZP_02420190.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662] gi|167652055|gb|EDR96184.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662] Length = 472 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 15/157 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N +G + +IVT TTR + + + +DT GI + D Sbjct: 239 AIVGKPNAGKSSILNVLLGEERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDD 298 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 K+ + + ++ AD+V VVD+ L +++K + + ++I++LNK D Sbjct: 299 VVEKIGVDKARDSVIKADLVLYVVDTSVPLTKEDEEIMKLLNGK--QVIVLLNKSDL--- 353 Query: 146 ERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDV 178 E + ++E F+++ F VSA +G +D+ Sbjct: 354 ETKVSESE------FLDRGFQNIVPVSAKSLYGLEDL 384 >gi|153008194|ref|YP_001369409.1| tRNA modification GTPase TrmE [Ochrobactrum anthropi ATCC 49188] gi|205415784|sp|A6WX76|MNME_OCHA4 RecName: Full=tRNA modification GTPase mnmE gi|151560082|gb|ABS13580.1| tRNA modification GTPase TrmE [Ochrobactrum anthropi ATCC 49188] Length = 442 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 20/158 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VGA NAGKS+L+N G +V+I++ + TTR ++ + + DT G+ Sbjct: 224 VVIVGAPNAGKSSLLNFLAGREVAIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETD 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 S K+ I + + + AD+V L+ D + + V ++ + + K ++ L DC Sbjct: 284 SSVEKIGIERARARMADADLVLLLEDMNDPIAVASDEIPEALWKIGTKADLNAESADCW- 342 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 T+ +S G G D +L L Sbjct: 343 -------------------TYRISTKTGEGLDQLLTNL 361 >gi|152988592|ref|YP_001351679.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7] gi|166234809|sp|A6VF44|MNME_PSEA7 RecName: Full=tRNA modification GTPase mnmE gi|150963750|gb|ABR85775.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7] Length = 455 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D K+ + + I AD V LVVD+ + L E + ++ LI NK Sbjct: 278 EDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|1698846|gb|AAC44620.1| GTP-binding protein [Thermoplasma acidophilum] Length = 360 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H F S VALVG N GKS+L+NR ++ I + T + I GI+ K ++ Sbjct: 50 HSGFAVPKSGDATVALVGFPNVGKSSLLNRLTNSESEIGDYAFTTLQPIP-GILEYKGAE 108 Query: 72 IVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 I LD PGI NA SY R S ++ AD++ +V D Sbjct: 109 IQILDLPGIIENA--SYGSARGREILSAVRAADLIVIVTD 146 >gi|83952201|ref|ZP_00960933.1| GTP-binding protein HflX [Roseovarius nubinhibens ISM] gi|83837207|gb|EAP76504.1| GTP-binding protein HflX [Roseovarius nubinhibens ISM] Length = 425 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 11/170 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFN 82 VALVG TNAGKSTL NR G+ V T +R + + ++ DT G + Sbjct: 205 IVALVGYTNAGKSTLFNRLTGSDVMAKDMLFATLDPTMRKVSLPHGGPDVILSDTVGFIS 264 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK-----EIAKRSSRLILI 136 + R + + AD+V V D SH E + D+ ++A+ + R I + Sbjct: 265 DLPTELVAAFRATLEEVVSADLVVHVRDISHPETEEQARDVEAILESLDVAEGTPR-IEL 323 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D + PE + AN+ E+ +VSA G G + ++ L Sbjct: 324 WNKADLLDPE---ARETFANQAARREEVILVSAVSGEGMEAFVDQATEAL 370 >gi|291546330|emb|CBL19438.1| ribosome-associated GTPase EngA [Ruminococcus sp. SR1/5] Length = 441 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N G +SIV TR + V+ + +DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNALAGDNISIVKDTPGVTRDRIYADVTWLDRTFTLIDTGGI--E 62 Query: 84 KDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI-LILNK 139 DS ++ R+ + I AD++ + D + L V+ + ++ +RS + + L++NK Sbjct: 63 PDSSDIILSRMREQAQIAIDTADVIIFITDVRQGL-VDSDAKVADMLRRSGKPVRLVVNK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D + + +++ E N + I + +SA G D+L+ + P Sbjct: 122 VDSHQ-KYMMDVYEFYN--LGIGEPIPISAANRQGLGDMLDEVIKEFP 166 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKS+L+N+ +G + IV++ TTR + V+ + +F+DT G+ Sbjct: 180 IAIVGKPNVGKSSLINKLLGEERVIVSNIAGTTRDAIDTKVTWNKKDYIFIDTAGLRRKG 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + + ++ AD+V +V+D+ + + R +I+ +NK D Sbjct: 240 KVKEEIERYSVIRTVTAVERADVVVVVIDASEGVTEQDAKIAGIAHDRGKGIIVAVNKWD 299 Query: 142 CVK 144 ++ Sbjct: 300 AIE 302 >gi|264680930|ref|YP_003280840.1| tRNA modification GTPase TrmE [Comamonas testosteroni CNB-2] gi|262211446|gb|ACY35544.1| tRNA modification GTPase TrmE [Comamonas testosteroni CNB-2] Length = 475 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ ++ Sbjct: 233 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSD 292 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 D ++ I +W I AD V + D R Sbjct: 293 DEVERIGIARAWDEIAAADAVLFLHDLTR 321 >gi|254673772|emb|CBA09462.1| putative tRNA modification GTPase [Neisseria meningitidis alpha275] Length = 448 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 310 >gi|134094497|ref|YP_001099572.1| GTPase [Herminiimonas arsenicoxydans] Length = 338 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 13/159 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N K+ T + R I + +V DT G Sbjct: 157 SVSLVGYTNAGKSTLFNALAKTKMLAADQLFATLDTTSRRIYLGEAGNVVISDTVGFI-- 214 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILIL 137 ++ H+L+ R + HAD++ VVD ++ ++ +L+EI IL+ Sbjct: 215 RELPHQLVAAFRATLEETIHADLLLHVVDGASPARMEQIEEVNAVLREIGADQIPQILVW 274 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID E LE+ E I + F +SA G G D Sbjct: 275 NKIDAAGLEPALERDEYDK----IRRVF-ISAQTGSGLD 308 >gi|122701649|emb|CAL88214.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALDL 168 >gi|122700821|emb|CAL87999.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|187928158|ref|YP_001898645.1| GTP-binding proten HflX [Ralstonia pickettii 12J] gi|187725048|gb|ACD26213.1| GTP-binding proten HflX [Ralstonia pickettii 12J] Length = 417 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A+ T + R + E +V DT G Sbjct: 203 SVSLVGYTNAGKSTLFNALTKARAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRD 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ + +L EI IL++N Sbjct: 263 LPTQLVAAFRATLEETVHADVLLHVVDAASTVKHEQME-QVDRVLDEINASGIPQILVMN 321 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 KID + R ++ + + F VSA +G G D + L T Sbjct: 322 KIDAAEELRAAGPRIERDETGAVRRVF-VSAIEGTGLDLLREALVET 367 >gi|284048589|ref|YP_003398928.1| small GTP-binding protein [Acidaminococcus fermentans DSM 20731] gi|283952810|gb|ADB47613.1| small GTP-binding protein [Acidaminococcus fermentans DSM 20731] Length = 405 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 10/149 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L G NAGKS+L+N G ++IV+ +K TT + + + ++ DTPG+ + Sbjct: 16 IGLFGCRNAGKSSLINAITGQDLAIVSDYKGTTTDPVSKAMEILPLGPVLLTDTPGMDDD 75 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + I + ++ DI LVVD+ + LL+EI R +++ NK D V Sbjct: 76 TD-LGQSRIEKARLVLRSTDIALLVVDAATGMNDFDRKLLQEIRDRKIPYLVVFNKCDLV 134 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKG 172 L E + + + +VSA G Sbjct: 135 PSFTLPEDLK--------DHSMLVSAQAG 155 >gi|256004068|ref|ZP_05429053.1| GTP-binding proten HflX [Clostridium thermocellum DSM 2360] gi|255991991|gb|EEU02088.1| GTP-binding proten HflX [Clostridium thermocellum DSM 2360] Length = 582 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 15 FVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 F + +R+ +ALVG TNAGKSTL+NR + V T R + Sbjct: 349 FRESRTRNAIPTIALVGYTNAGKSTLMNRLCESNVLAEDKLFATLDPTTRSFRLSDGREA 408 Query: 73 VFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRE-----LKVNIHDLLKE 125 + +DT G + H+L+ + + +AD++ VVD+ E +KV ++D+L+ Sbjct: 409 LLIDTVGFI--RKLPHELVEAFKSTLEEAVYADMLIHVVDASNEEAEEQVKV-VNDILES 465 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + + +I+ LNK+D VK L + ++ F +SA G G D +L + Sbjct: 466 LGAANKPVIMALNKMDMVKGGLRLAISNPNGRI------FEISAVTGQGIDAMLEGIREM 519 Query: 186 LP 187 LP Sbjct: 520 LP 521 >gi|300776276|ref|ZP_07086134.1| ribosome-associated GTPase EngA [Chryseobacterium gleum ATCC 35910] gi|300501786|gb|EFK32926.1| ribosome-associated GTPase EngA [Chryseobacterium gleum ATCC 35910] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 8/182 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKSTL NR + + +IV TR G +DT G Sbjct: 2 SNIVAIVGRPNVGKSTLFNRLLERREAIVDSTAGVTRDRHYGKSDWNGVDFTVIDTGGYD 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + IR + A + +++ L H++ + + + + + +++NK+ Sbjct: 62 VGTDDIFEEEIRKQVQLAVDEATSIIFMMNVEEGLTDTDHEIYRLLRRSNKPIYIVINKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D K E L E + I+K + +S+ G G D+L+ + P + D Sbjct: 122 DSAKEE--LPATEFYQ--LGIDKYYTLSSATGSGTGDLLDDIVRDFPTTEY---KDPFEG 174 Query: 201 LP 202 LP Sbjct: 175 LP 176 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 + + G N GKSTL N + + +IVT TTR ++ + ++ + V +DT G+ Sbjct: 178 ITIAGRPNVGKSTLTNALLDVERNIVTDIAGTTRDSIQTLYNKFGHEFVLVDTAGMRRKS 237 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N ++ +M S +I+++D+V ++VD+ + + ++ K +++++NK Sbjct: 238 KVNEDLEFYSVM--RSIRSIEYSDVVIIMVDATQGWESQDMNIFGLAQKNRKGIVILVNK 295 Query: 140 IDCVK 144 D ++ Sbjct: 296 WDLIE 300 >gi|225575683|ref|ZP_03784293.1| hypothetical protein RUMHYD_03776 [Blautia hydrogenotrophica DSM 10507] gi|225037100|gb|EEG47346.1| hypothetical protein RUMHYD_03776 [Blautia hydrogenotrophica DSM 10507] Length = 364 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N +G +IVT TTR ++ ++ + +DT GI + +D Sbjct: 225 ILGKPNAGKSSLLNLLIGENKAIVTDIAGTTRDVLEECITLSGISLKIIDTAGIRDTEDL 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + + K AD++ VVDS L N +++ + + + I++LNK D Sbjct: 285 VEQIGVDKAKEMGKEADLILYVVDSSVPLDENDEKIIEMMEGKQA--IVLLNKTD 337 >gi|122702589|emb|CAL88484.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKTALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|16081154|ref|NP_391982.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. 168] gi|221312085|ref|ZP_03593932.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. 168] gi|221316410|ref|ZP_03598215.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321323|ref|ZP_03602617.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. JH642] gi|221325606|ref|ZP_03606900.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. SMY] gi|135725|sp|P25811|MNME_BACSU RecName: Full=tRNA modification GTPase mnmE gi|40025|emb|CAA44403.1| unnamed protein product [Bacillus subtilis] gi|467386|dbj|BAA05232.1| thiophen and furan oxidation [Bacillus subtilis] gi|2636649|emb|CAB16139.1| tRNA modification GTPase [Bacillus subtilis subsp. subtilis str. 168] Length = 459 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT GI +D Sbjct: 226 IIGRPNVGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC---V 143 ++ + S +K AD++ LV++ EL L + A +I+ILNK D + Sbjct: 286 VERIGVERSRQVLKEADLILLVLNYSEELSEEDVKLFE--AVEGMDVIVILNKTDLEPKI 343 Query: 144 KPERLLEQA 152 ER+ E A Sbjct: 344 DTERVRELA 352 >gi|325285620|ref|YP_004261410.1| GTP-binding protein engA [Cellulophaga lytica DSM 7489] gi|324321074|gb|ADY28539.1| GTP-binding protein engA [Cellulophaga lytica DSM 7489] Length = 434 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 10/184 (5%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR + + +IV TR G + +DT G + Sbjct: 2 SAIVAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGVEFSLIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++D + + + I AD + +VD + D+ K + + + L++NK+ Sbjct: 62 LGSEDVFEAEIDKQVELAIDEADAIVFMVDVESGVTGMDEDVAKLLRRVDKPIFLVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D K R + E + + + F +++ G G D+L+ + LP + D Sbjct: 122 DNAK--RAEDAVEFYS--LGLGDYFTIASINGSGTGDLLDAVVKVLP-----EKETENDD 172 Query: 201 LPMF 204 LP F Sbjct: 173 LPRF 176 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G + IVT TTR + + + +DT GI Sbjct: 177 AVVGRPNAGKSSFINALIGEERYIVTDVAGTTRDSIDTKYNRFGFEFNLVDTAGIRRKAK 236 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I+HAD+ L++D+ R + ++ +A+R+++ I+IL NK D Sbjct: 237 VKEDLEFYSVMRSVRAIEHADVCILMLDATRGFDGQVENIF-WLAQRNNKGIVILVNKWD 295 Query: 142 CVK 144 V+ Sbjct: 296 LVE 298 >gi|292806550|gb|ADE42405.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806552|gb|ADE42406.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNVLDL 168 >gi|293604548|ref|ZP_06686953.1| GTP-binding protein HflX [Achromobacter piechaudii ATCC 43553] gi|292817129|gb|EFF76205.1| GTP-binding protein HflX [Achromobacter piechaudii ATCC 43553] Length = 368 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 15/174 (8%) Query: 20 SRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +R G V+LVG TNAGKSTL N A T + R I E +V DT Sbjct: 185 ARGGALSVSLVGYTNAGKSTLFNALTRADSYAADQLFATLDTTTRRIWIEGAGSVVVSDT 244 Query: 78 PGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSS 131 G +D H L+ R + HAD++ VVD+ R+ ++ ++ +L EI + Sbjct: 245 VGFI--RDLPHGLIAAFRATLEETVHADLLLHVVDAASPQRDEQIFEVNKVLAEIGASAI 302 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 IL+ NKID E +E+ + I + F VSAT+ G D + + T Sbjct: 303 PTILVYNKIDRAGLEPRVER----DAHGTIARVF-VSATERAGLDALRGAIAET 351 >gi|293568055|ref|ZP_06679393.1| GTP-binding protein EngA [Enterococcus faecium E1071] gi|291589276|gb|EFF21086.1| GTP-binding protein EngA [Enterococcus faecium E1071] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I+ AD++ VV S RE + +++ +I RS++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIEEADVIICVV-SGREGVTDADEMVAKILYRSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + E + + + + +S + G G D+L+ Sbjct: 123 -NPEMRNDIYEFYS--LGLGDPYPISGSHGLGIGDILD 157 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + IV+ TTR +I VSE + + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRKRG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVKPE----RLLEQAEIANKLVFIEKT---FMVSATK 171 VK E R EQ EI ++ +++ F+ + TK Sbjct: 298 LVKKETNTMRDFEQ-EIRDEFRYLDYAPIVFVSAVTK 333 >gi|297191639|ref|ZP_06909037.1| ATP/GTP-binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|197721574|gb|EDY65482.1| ATP/GTP-binding protein [Streptomyces pristinaespiralis ATCC 25486] Length = 496 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 12/191 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + +R VA+ G TNAGKS+L+NR GA V + T V Sbjct: 254 EIAEMKTGREIKRQERRRNRVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 313 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 314 RRAETPSGRGYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPAPEEQLA 373 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++++ I+++NK D P + +L+ IE+ VSA G G Sbjct: 374 AVREVIRDVGAVDVPEIVVINKADAADP-------LVLQRLLRIERHAIAVSARTGAGMA 426 Query: 177 DVLNYLCSTLP 187 +++ + LP Sbjct: 427 ELVQLIDDELP 437 >gi|160882378|ref|ZP_02063381.1| hypothetical protein BACOVA_00327 [Bacteroides ovatus ATCC 8483] gi|237719052|ref|ZP_04549533.1| GTP-binding protein EngA [Bacteroides sp. 2_2_4] gi|260172013|ref|ZP_05758425.1| GTP-binding protein EngA [Bacteroides sp. D2] gi|299148136|ref|ZP_07041198.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_23] gi|315920326|ref|ZP_07916566.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112191|gb|EDO13936.1| hypothetical protein BACOVA_00327 [Bacteroides ovatus ATCC 8483] gi|229451431|gb|EEO57222.1| GTP-binding protein EngA [Bacteroides sp. 2_2_4] gi|298512897|gb|EFI36784.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_23] gi|313694201|gb|EFS31036.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 437 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS++VN F+G + +IVT TTR + ++ +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S +I+ +D+ L++D+ R ++ ++ I K L++++NK Sbjct: 239 VNEDLEYYSVV--RSIRSIEGSDVCILMLDATRGVEGQDLNIFSLIQKNQKGLVVVINKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 13/170 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 N+ D + + + + ++ AD++ VVD + DL ++A + +S +I++ Sbjct: 62 VNSDDVFEEEIRKQVLLAVEEADVILFVVDVMN----GVTDLDMQVAAILRRANSPVIMV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D L A KL + + VSA G G D+++ + S Sbjct: 118 ANKTDN---HDLQYNAPEFYKL-GLGDPYCVSAMTGSGTGDLMDLIVSNF 163 >gi|122702279|emb|CAL88330.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLDL 168 >gi|122701533|emb|CAL88156.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRVLNL 168 >gi|122700859|emb|CAL88018.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSVPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122700911|emb|CAL88044.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQISDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|148556796|ref|YP_001264378.1| GTPase ObgE [Sphingomonas wittichii RW1] gi|261263094|sp|A5VD74|OBG_SPHWW RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|148501986|gb|ABQ70240.1| GTP-binding protein Obg/CgtA [Sphingomonas wittichii RW1] Length = 345 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 9/178 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 LVG NAGKST +N AK + + T R + G+ + K + V D PG+ Sbjct: 163 GLVGLPNAGKSTFINAVSNAKAKVGAYPFTTIRPQL-GVATHKGREFVVADIPGLIEGAA 221 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK-EIAKRSSRL-----ILILNK 139 + R I+ ++ +VD+ + V +++++ E+ + L +L LNK Sbjct: 222 EGAGIGDRF-LGHIERCRVLLHLVDASGDDPVGAYEIVRGELDAYGAGLADKPQVLALNK 280 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID V + L + A+ KL E +S G G VL+ + L AP +A++ Sbjct: 281 IDAVDAKTLDKLAKKLAKLGGGE-VMRLSGASGEGLPAVLDKIIEILGPAPETTAANE 337 >gi|307707079|ref|ZP_07643876.1| small GTP-binding domain protein [Streptococcus mitis SK321] gi|307617605|gb|EFN96775.1| small GTP-binding domain protein [Streptococcus mitis SK321] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N ++ ++N +L+G N GKS+L+N +G I + TTR + ++ + Sbjct: 162 NLPNEYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTD 221 Query: 70 SQ-IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 Q +DT G+ + Y K + + I +D+V +V+++ RE I Sbjct: 222 GQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGF 281 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K +I+++NK D ++ Sbjct: 282 AHEAGK---GMIIVVNKWDTLE 300 >gi|292806444|gb|ADE42352.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ ++ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|242255814|gb|ACS88891.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 19/173 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 NKID K ER + + K+F +S + G +++ + L L+ Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILRALDLS 169 >gi|239940226|ref|ZP_04692163.1| GTP-binding protein EngA [Streptomyces roseosporus NRRL 15998] gi|239986716|ref|ZP_04707380.1| GTP-binding protein EngA [Streptomyces roseosporus NRRL 11379] gi|291443657|ref|ZP_06583047.1| GTP-binding protein engA [Streptomyces roseosporus NRRL 15998] gi|291346604|gb|EFE73508.1| GTP-binding protein engA [Streptomyces roseosporus NRRL 15998] Length = 489 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 53 VLAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQD 112 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVDS ++K + + ++L NK+D Sbjct: 113 VLGLDASVAAQAEYAIETADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKVDG- 171 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E A + + + + VS+ G G D+L+ + LP AP Sbjct: 172 ---QSGEADATALWSLGLGEPYPVSSLHGRGTGDMLDAVLEALPDAP 215 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +AL+G N GKS+L+N+ G +V TTR V +++ F+DT GI Sbjct: 229 IALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWKFIDTAGIRRRV 288 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++DS + V ++ + +++ N Sbjct: 289 HLQEGADYYASLR---TAAAVEKAEVAVVLIDSSESISVQDQRIITMAVEAGRAIVVAFN 345 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 346 KWDTLDEER 354 >gi|222152562|ref|YP_002561737.1| GTP-binding protein EngA [Streptococcus uberis 0140J] gi|254783170|sp|B9DTQ3|DER_STRU0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222113373|emb|CAR41004.1| GTP-binding protein EngA [Streptococcus uberis 0140J] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + ++ R+++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQAQIAMDEADVIVFVV-SGKEGVTDADEYVAKMLYRTNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 E+ N + + + + S+ G G D+L+ + LP+ Sbjct: 123 --------NPEMRNDIYDFYALGLGDPYPASSVHGIGTGDILDAIIEKLPV 165 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + I + TTR + ++++ Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDQDGQEYNMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V LV+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLLVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDLLE 300 >gi|169635752|emb|CAQ16330.1| t-RNA modification GTPase protein [Brevibacterium linens] Length = 457 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ ++ + I AD V LVVD+ Sbjct: 279 DQVEKIGVQRALKAIGEADRVLLVVDA 305 >gi|146297756|ref|YP_001181527.1| tRNA modification GTPase TrmE [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166200470|sp|A4XN51|MNME_CALS8 RecName: Full=tRNA modification GTPase mnmE gi|145411332|gb|ABP68336.1| tRNA modification GTPase trmE [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 455 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 4/122 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +SG +VG N GKS+L+NR + + SIVT TTR ++ ++ + I+ +DT G Sbjct: 218 KSGIYTVIVGRPNVGKSSLLNRLLKEERSIVTDIPGTTRDVIEEVLDIEGIPIILVDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + +D ++ + + +++ AD+V +++S K +I ++ I ++ + I+++NK Sbjct: 278 VRQTEDIVERIGVERTLKSVERADLVIFMIESDGITKEDI-EIFSSI--KNKKYIILVNK 334 Query: 140 ID 141 D Sbjct: 335 TD 336 >gi|302392990|ref|YP_003828810.1| GTP-binding proten HflX [Acetohalobium arabaticum DSM 5501] gi|302205067|gb|ADL13745.1| GTP-binding proten HflX [Acetohalobium arabaticum DSM 5501] Length = 606 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 21/203 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL+NR A T S + +++ DT G Sbjct: 381 TISLVGYTNAGKSTLLNRLTEATAVTKDELFATLDSNTCRLKLPVGRKVLISDTVGFI-- 438 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNIH---DLLKEIAKRSSRLILIL 137 + H+L+ R + + ADI+ VVD + + K + ++L E+ +I IL Sbjct: 439 RKLPHQLIAAFRATLEEVTEADILLHVVDVTEADYKAKMDAVVEVLSELNVLDKPIITIL 498 Query: 138 NKIDCVKPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVL----NYLCSTLPLAPW 191 NKID +K ++ +E Q + N LV +SA +G G D +L N L T+ Sbjct: 499 NKIDLLKDQKQVELIQQNLKNSLV-------ISAKEGQGVDRLLDEISNLLLDTMVELEL 551 Query: 192 VYSADQISDLPMFHFTAEITREK 214 + L + H ++ RE+ Sbjct: 552 LLPYSDAGALELIHQRGKVLREE 574 >gi|212696217|ref|ZP_03304345.1| hypothetical protein ANHYDRO_00753 [Anaerococcus hydrogenalis DSM 7454] gi|212676846|gb|EEB36453.1| hypothetical protein ANHYDRO_00753 [Anaerococcus hydrogenalis DSM 7454] Length = 442 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++N ++ V LVG TN GKSTL N+ VG + +I + TR V V + + Sbjct: 1 MENNMKAPIVTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILA 60 Query: 76 DTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DT G+ + K+ ++ + + +D++ VVD + + ++ E+ K + ++I Sbjct: 61 DTGGLDISNKEIMNQEIKSQVEKALLESDLILFVVDGREGINPHDFEISNELRKYNKKVI 120 Query: 135 LILNKID 141 ++ NKID Sbjct: 121 VVANKID 127 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 18/171 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A++G NAGKS+LVN + + IVT TTR + K++ V +DT G+ Sbjct: 182 IAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDTYWQYKDNNYVLIDTAGLRRKN 241 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 D+ + ++ + ++I ++D+ V + + +IA + +I+ + Sbjct: 242 KVSDNIEYYANQRTFDAVDSSEICLFLIDA----TVGVTEQDTKIAGYAHNKRKAIIIAV 297 Query: 138 NKIDCVKPE----RLLEQAEIANKLVF--IEKTFMVSATKGHGCDDVLNYL 182 NK D V+ E R +E+ EI NKL F +S K D+LN + Sbjct: 298 NKWDKVEKETNTMRNMER-EIRNKLSFALYAPIIFISVLKSQRIIDLLNLI 347 >gi|208434748|ref|YP_002266414.1| GTP-binding protein-like protein [Helicobacter pylori G27] gi|238058976|sp|B5Z7J9|DER_HELPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|208432677|gb|ACI27548.1| GTP-binding protein-like protein [Helicobacter pylori G27] Length = 460 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + E+A A + K+F +S + G +++ + + L L Sbjct: 128 DKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAVLNALSL 169 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 201 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 260 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 261 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 319 >gi|182439534|ref|YP_001827253.1| GTP-binding protein EngA [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468050|dbj|BAG22570.1| putative GTP-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 489 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 53 VLAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQD 112 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVDS ++K + + ++L NK+D Sbjct: 113 VLGLDASVAAQAEYAIETADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKVDG- 171 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E A + + + + VS+ G G D+L+ + LP AP Sbjct: 172 ---QSGEADATALWSLGLGEPYPVSSLHGRGTGDMLDAVLEALPDAP 215 Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +AL+G N GKS+L+N+ G +V TTR V +++ F+DT GI Sbjct: 229 IALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWKFIDTAGIRRRV 288 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++DS + V ++ + L++ N Sbjct: 289 HLQEGADYYASLR---TAAAVEKAEVAVVLIDSSESISVQDQRIITMAVEAGRALVVAFN 345 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 346 KWDTLDEER 354 >gi|122702677|emb|CAL88528.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K + I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KGALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NKID K ER + + K+F +S + G +++ + S L L P Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSALNLNP 170 >gi|18075563|emb|CAD11177.1| GTP-binding protein [Helicobacter pylori] gi|122702795|emb|CAL88587.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGVPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|325283727|ref|YP_004256268.1| tRNA modification GTPase mnmE [Deinococcus proteolyticus MRP] gi|324315536|gb|ADY26651.1| tRNA modification GTPase mnmE [Deinococcus proteolyticus MRP] Length = 443 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+GA NAGKS+L+N +G + SIVT TTR + +S + +DT G+ + + Sbjct: 227 IALIGAPNAGKSSLLNALLGYERSIVTPLAGTTRDYLEAGLSLAGVPVTLVDTAGLRDTE 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D +R + + + AD+V + D Sbjct: 287 DVVEAAGVRQAHALAQGADVVLTLSDG 313 >gi|291539580|emb|CBL12691.1| GTP-binding protein HflX [Roseburia intestinalis XB6B4] Length = 414 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 17/170 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 A+VG TNAGKSTL+N GA V T R + +I+ DT G F Sbjct: 203 VAAIVGYTNAGKSTLLNHLTGAGVLEEDKLFATLDPTTRVLELPGRQEILLTDTVG-FIR 261 Query: 84 KDSYHKLMIRLSWSTI---KHADIVCLVVDS---HRELKVNI-HDLLKEIAKRSSRLILI 136 K +H +I ST+ K+AD + VVD+ R+ +++I +D L ++ R +I + Sbjct: 262 KLPHH--LIEAFKSTLEEAKYADYIVHVVDASNPQRDKQMHIVYDTLYQLDIREKTVITL 319 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D V E + + + T VSA KG G +++ C+ L Sbjct: 320 FNKQDQVTDEEPIRDFK-------ADYTLAVSAKKGTGLEELKELFCTLL 362 >gi|239831251|ref|ZP_04679580.1| small GTP-binding protein [Ochrobactrum intermedium LMG 3301] gi|239823518|gb|EEQ95086.1| small GTP-binding protein [Ochrobactrum intermedium LMG 3301] Length = 489 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 7/123 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 VA+VG N GKSTL NR VG K+++V TR R I K + F +DT G+ Sbjct: 10 TVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRD--RRIHDAKLYDLKFQVIDTAGLE 67 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 A DS M + + I+ AD++ VVD+ L E+ +RS + ++L+ NK Sbjct: 68 EAANDSLEARMRAQTEAAIQEADVILFVVDAKNGL-TPTDSTFAEVVRRSGKPVVLVANK 126 Query: 140 IDC 142 + Sbjct: 127 AEA 129 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 16/180 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ +A+VG NAGKSTL+N +G + + TR + ++ +I DT Sbjct: 213 DATKPMRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISVDWEWRDRKIKLFDT 272 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ ++ KL + I+ A++V +V+D+ + + I DL I + Sbjct: 273 AGLRRKSRVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQIADL---IIREGR 329 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFI------EKTFMVSATKGHGCDDVLNYLCST 185 I+ NK D ++ +R + A++ K + + +S +G G D ++ + T Sbjct: 330 APIIAFNKWDLIE-DRQMVLADLYEKTARLLPQVRGLRAVPISGERGQGIDKLMENVVKT 388 >gi|122702701|emb|CAL88540.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALDL 168 >gi|152996644|ref|YP_001341479.1| HSR1-like GTP-binding protein [Marinomonas sp. MWYL1] gi|150837568|gb|ABR71544.1| GTP-binding protein HSR1-related [Marinomonas sp. MWYL1] Length = 429 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 10/134 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D S V+LVG TNAGKSTL NR GA V T +R + E+ IV D Sbjct: 193 RDRSSVPTVSLVGYTNAGKSTLFNRATGADVYAADQLFATLDPTLRRLDIEQIGSIVLAD 252 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIK---HADIVCLVVD----SHRELKVNIHDLLKEIAKR 129 T G + H+L I+ +T+K AD++ +VD S E ++ +L+EI Sbjct: 253 TVGFI--RQLPHRL-IKAFQATLKESSEADLLLHIVDAADISRDENMKHVDSVLEEIGAN 309 Query: 130 SSRLILILNKIDCV 143 + I NKID + Sbjct: 310 EVPTLTIFNKIDLL 323 >gi|329668160|gb|AEB94108.1| putative tRNA modification GTPase TrmE [Lactobacillus johnsonii DPC 6026] Length = 461 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N +IVT TTR + VS K + +DT G Sbjct: 222 RNGLATAIVGRPNVGKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + ++ K+ + S I AD+V L++D+ ++L +LL A + + I+ILNK Sbjct: 282 IHHTENKVEKIGVERSKKAIAEADLVLLLLDASQDLTDEDKNLLNLTANK--KRIIILNK 339 Query: 140 ID 141 D Sbjct: 340 QD 341 >gi|306822736|ref|ZP_07456114.1| ribosome-associated GTPase EngA [Bifidobacterium dentium ATCC 27679] gi|309800900|ref|ZP_07695032.1| ribosome biogenesis GTPase Der [Bifidobacterium dentium JCVIHMP022] gi|304554281|gb|EFM42190.1| ribosome-associated GTPase EngA [Bifidobacterium dentium ATCC 27679] gi|308222436|gb|EFO78716.1| ribosome biogenesis GTPase Der [Bifidobacterium dentium JCVIHMP022] Length = 709 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + ++ AD V LVVD L ++K + + L +NK+D Sbjct: 333 DVEGIESAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRASGKPVTLAVNKVDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + E L AE + + + + +SA G G ++L+ +L A Sbjct: 393 RESEYL--TAEFWK--MGLGEPYGISAMHGRGIGELLDVALESLKKA 435 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + S+V TTR V +V+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAHEERSVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ D+ + + ++ + ++L+ N Sbjct: 507 RRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDLM 571 >gi|296114949|ref|ZP_06833595.1| GTP-binding protein hflX [Gluconacetobacter hansenii ATCC 23769] gi|295978507|gb|EFG85239.1| GTP-binding protein hflX [Gluconacetobacter hansenii ATCC 23769] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 20/167 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N GA V T +RGI QI+ DT G + Sbjct: 207 VVALVGYTNAGKSTLFNALTGASVYAQDQLFATLDPTMRGIRLPSGRQIILSDTVGFISD 266 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHREL---KVNIHDLLKEIAKRS-------SR 132 + R + + ADI+ V D SH E + ++ ++L+ +A SR Sbjct: 267 LPTELIAAFRATLEEVAEADIILHVRDASHPETSAQRADVVEVLEGMAHSGTIEPDWQSR 326 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +I +LNK D + + + ++SA G G D+L Sbjct: 327 VIEVLNKADLMGGR---------DAVGARPGAIVISAITGDGLPDLL 364 >gi|228907236|ref|ZP_04071096.1| GTP-binding protein engA [Bacillus thuringiensis IBL 200] gi|228852376|gb|EEM97170.1| GTP-binding protein engA [Bacillus thuringiensis IBL 200] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + + + L F E F +S T G G D+L+ + P Sbjct: 123 NPEMRSDIYDFYS-LGFGEP-FPISGTHGLGLGDLLDEAANHFP 164 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +I+++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 AVK 300 >gi|332201131|gb|EGJ15202.1| GTP-binding protein engA [Streptococcus pneumoniae GA47901] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N ++ ++N +L+G N GKS+L+N +G I + TTR + ++ + Sbjct: 162 NLPNEYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTD 221 Query: 70 SQ-IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 Q +DT G+ + Y K + + I +D+V +V+++ RE I Sbjct: 222 GQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGF 281 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K +I+++NK D ++ Sbjct: 282 AHEAGK---GMIIVVNKWDTLE 300 >gi|317453525|emb|CBL87872.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|258542805|ref|YP_003188238.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01] gi|256633883|dbj|BAH99858.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01] gi|256636942|dbj|BAI02911.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-03] gi|256639995|dbj|BAI05957.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-07] gi|256643051|dbj|BAI09006.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-22] gi|256646106|dbj|BAI12054.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-26] gi|256649159|dbj|BAI15100.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-32] gi|256652146|dbj|BAI18080.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655203|dbj|BAI21130.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-12] Length = 472 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 5/157 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 V + G N GKSTL NR VG + ++V TR G+ + + +DT G+ Sbjct: 14 VVVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEGVALIRGRYVRLIDTAGLEEA 73 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A +S M S S ++ AD+V VD+ + + I +++ ++LI NK + Sbjct: 74 APESLFGRMRFSSESAVREADLVLFCVDARAGITPADEHFAQWIRRQNRPVLLIANKSEG 133 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 RL + + + + + +SA G G D++ Sbjct: 134 ----RLGAASAMEAYALGLGEPLALSAEHGEGVTDLM 166 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+N +G + I + TR + + + + +DT G+ Sbjct: 208 VAIVGRPNAGKSTLMNALLGEERMITGPEAGLTRDSIAVTLKDGDDTFEIVDTAGLRKKA 267 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRL-ILILNK 139 +S K+ + + +K A++ LV+D+ L V+ DL + + +R R +L LNK Sbjct: 268 RIDESLEKMSVSAAIEALKMAEVAVLVLDAT--LGVHEQDLQIARLIEREGRACVLALNK 325 Query: 140 IDCVK 144 D V+ Sbjct: 326 WDAVQ 330 >gi|218896533|ref|YP_002444944.1| ribosome-associated GTPase EngA [Bacillus cereus G9842] gi|228900184|ref|ZP_04064416.1| GTP-binding protein engA [Bacillus thuringiensis IBL 4222] gi|228938715|ref|ZP_04101319.1| GTP-binding protein engA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228964578|ref|ZP_04125687.1| GTP-binding protein engA [Bacillus thuringiensis serovar sotto str. T04001] gi|228971597|ref|ZP_04132220.1| GTP-binding protein engA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978207|ref|ZP_04138584.1| GTP-binding protein engA [Bacillus thuringiensis Bt407] gi|226741129|sp|B7IP82|DER_BACC2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218545843|gb|ACK98237.1| ribosome-associated GTPase EngA [Bacillus cereus G9842] gi|228781224|gb|EEM29425.1| GTP-binding protein engA [Bacillus thuringiensis Bt407] gi|228788120|gb|EEM36076.1| GTP-binding protein engA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795112|gb|EEM42609.1| GTP-binding protein engA [Bacillus thuringiensis serovar sotto str. T04001] gi|228820956|gb|EEM66977.1| GTP-binding protein engA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859454|gb|EEN03882.1| GTP-binding protein engA [Bacillus thuringiensis IBL 4222] gi|326939221|gb|AEA15117.1| GTP-binding protein EngA [Bacillus thuringiensis serovar chinensis CT-43] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + + + L F E F +S T G G D+L+ + P Sbjct: 123 NPEMRSDIYDFYS-LGFGEP-FPISGTHGLGLGDLLDEAANHFP 164 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +I+++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 AVK 300 >gi|122702675|emb|CAL88527.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALDL 168 >gi|122702463|emb|CAL88422.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122702213|emb|CAL88297.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAILNALNL 168 >gi|306829944|ref|ZP_07463131.1| ribosome-associated GTPase EngA [Streptococcus mitis ATCC 6249] gi|304427955|gb|EFM31048.1| ribosome-associated GTPase EngA [Streptococcus mitis ATCC 6249] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTLKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|321313663|ref|YP_004205950.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5] gi|291486741|dbj|BAI87816.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. natto BEST195] gi|320019937|gb|ADV94923.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5] Length = 459 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT GI +D Sbjct: 226 IIGRPNVGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC---V 143 ++ + S +K AD++ LV++ EL L + A +I+ILNK D + Sbjct: 286 VERIGVERSRQVLKEADLILLVLNYSEELSEEDVKLFE--AVEGMDVIVILNKTDLEAKI 343 Query: 144 KPERLLEQA 152 ER+ E A Sbjct: 344 DTERVRELA 352 >gi|260774637|ref|ZP_05883544.1| GTP-binding protein HflX [Vibrio coralliilyticus ATCC BAA-450] gi|260609427|gb|EEX35572.1| GTP-binding protein HflX [Vibrio coralliilyticus ATCC BAA-450] Length = 429 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKST+ NR A V T +R I + DT G Sbjct: 199 TISLVGYTNAGKSTMFNRITEAGVYAADQLFATLDPTLRKIELADVGTAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRE-LKVNI---HDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ E + NI H++L+EI +L++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIHAVHEVLEEIGAHEVPALLVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ ++ I I + VSA +G G + + + L L Sbjct: 317 NKIDNLEDQK----PRIERDEEGIPRAVWVSAMEGIGVELLFDALTERL 361 >gi|122701607|emb|CAL88193.1| GTPase [Helicobacter pylori] gi|122702199|emb|CAL88290.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILGALDL 168 >gi|122700845|emb|CAL88011.1| GTPase [Helicobacter pylori] gi|122700855|emb|CAL88016.1| GTPase [Helicobacter pylori] gi|122702531|emb|CAL88455.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|15901543|ref|NP_346147.1| GTP-binding protein EngA [Streptococcus pneumoniae TIGR4] gi|15903596|ref|NP_359146.1| GTP-binding protein EngA [Streptococcus pneumoniae R6] gi|111657418|ref|ZP_01408170.1| hypothetical protein SpneT_02001366 [Streptococcus pneumoniae TIGR4] gi|116515879|ref|YP_816974.1| GTP-binding protein EngA [Streptococcus pneumoniae D39] gi|148989364|ref|ZP_01820732.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP6-BS73] gi|148997762|ref|ZP_01825326.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP11-BS70] gi|149011426|ref|ZP_01832673.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP19-BS75] gi|149020788|ref|ZP_01835317.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP23-BS72] gi|168487543|ref|ZP_02712051.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1087-00] gi|168491409|ref|ZP_02715552.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC0288-04] gi|168493616|ref|ZP_02717759.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC3059-06] gi|168575101|ref|ZP_02721064.1| GTP-binding protein EngA [Streptococcus pneumoniae MLV-016] gi|169832823|ref|YP_001695085.1| GTP-binding protein EngA [Streptococcus pneumoniae Hungary19A-6] gi|182684651|ref|YP_001836398.1| GTP-binding protein EngA [Streptococcus pneumoniae CGSP14] gi|194398265|ref|YP_002038320.1| GTP-binding protein EngA [Streptococcus pneumoniae G54] gi|221232445|ref|YP_002511598.1| GTP-binding protein EngA [Streptococcus pneumoniae ATCC 700669] gi|225855139|ref|YP_002736651.1| GTP-binding protein EngA [Streptococcus pneumoniae JJA] gi|225857322|ref|YP_002738833.1| GTP-binding protein EngA [Streptococcus pneumoniae P1031] gi|225859462|ref|YP_002740972.1| GTP-binding protein EngA [Streptococcus pneumoniae 70585] gi|225861533|ref|YP_002743042.1| GTP-binding protein EngA [Streptococcus pneumoniae Taiwan19F-14] gi|237649250|ref|ZP_04523502.1| GTP-binding protein EngA [Streptococcus pneumoniae CCRI 1974] gi|237822010|ref|ZP_04597855.1| GTP-binding protein EngA [Streptococcus pneumoniae CCRI 1974M2] gi|289167434|ref|YP_003445703.1| phosphoglycerate dehydrogenase-related protein, GTP-binding protein [Streptococcus mitis B6] gi|298229308|ref|ZP_06962989.1| GTP-binding protein EngA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255748|ref|ZP_06979334.1| GTP-binding protein EngA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503453|ref|YP_003725393.1| GTP-binding protein EngA [Streptococcus pneumoniae TCH8431/19A] gi|303254319|ref|ZP_07340427.1| GTP-binding protein EngA [Streptococcus pneumoniae BS455] gi|303258643|ref|ZP_07344623.1| GTP-binding protein EngA [Streptococcus pneumoniae SP-BS293] gi|303261806|ref|ZP_07347752.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS292] gi|303263670|ref|ZP_07349592.1| GTP-binding protein EngA [Streptococcus pneumoniae BS397] gi|303266846|ref|ZP_07352725.1| GTP-binding protein EngA [Streptococcus pneumoniae BS457] gi|303269910|ref|ZP_07355651.1| GTP-binding protein EngA [Streptococcus pneumoniae BS458] gi|307068334|ref|YP_003877300.1| putative GTPase [Streptococcus pneumoniae AP200] gi|307705427|ref|ZP_07642284.1| small GTP-binding domain protein [Streptococcus mitis SK597] gi|307707485|ref|ZP_07643967.1| GTP-binding protein EngA [Streptococcus mitis NCTC 12261] gi|307709642|ref|ZP_07646094.1| small GTP-binding domain protein [Streptococcus mitis SK564] gi|322377454|ref|ZP_08051945.1| ribosome-associated GTPase EngA [Streptococcus sp. M334] gi|54037053|sp|P64063|DER_STRR6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040976|sp|P64062|DER_STRPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122278180|sp|Q04J64|DER_STRP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238688353|sp|B1I766|DER_STRPI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238690849|sp|B5E756|DER_STRP4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691183|sp|B2IRW4|DER_STRPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783168|sp|C1C8U6|DER_STRP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783169|sp|B8ZMH4|DER_STRPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783171|sp|C1CFT0|DER_STRZJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783172|sp|C1CM45|DER_STRZP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783173|sp|C1CSX0|DER_STRZT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|14973204|gb|AAK75787.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae TIGR4] gi|15459218|gb|AAL00357.1| Phosphoglycerate dehydrogenase [Streptococcus pneumoniae R6] gi|116076455|gb|ABJ54175.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae D39] gi|147756261|gb|EDK63303.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP11-BS70] gi|147764416|gb|EDK71347.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP19-BS75] gi|147925114|gb|EDK76194.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP6-BS73] gi|147930429|gb|EDK81412.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP23-BS72] gi|168995325|gb|ACA35937.1| GTP-binding protein EngA [Streptococcus pneumoniae Hungary19A-6] gi|182629985|gb|ACB90933.1| GTP-binding protein EngA [Streptococcus pneumoniae CGSP14] gi|183569654|gb|EDT90182.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1087-00] gi|183574158|gb|EDT94686.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC0288-04] gi|183576280|gb|EDT96808.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC3059-06] gi|183578800|gb|EDT99328.1| GTP-binding protein EngA [Streptococcus pneumoniae MLV-016] gi|194357932|gb|ACF56380.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae G54] gi|220674906|emb|CAR69481.1| GTP-binding protein EngA [Streptococcus pneumoniae ATCC 700669] gi|225721482|gb|ACO17336.1| GTP-binding protein EngA [Streptococcus pneumoniae 70585] gi|225723540|gb|ACO19393.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae JJA] gi|225724777|gb|ACO20629.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae P1031] gi|225727275|gb|ACO23126.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae Taiwan19F-14] gi|288907001|emb|CBJ21835.1| phosphoglycerate dehydrogenase-related protein, GTP-binding protein [Streptococcus mitis B6] gi|298239048|gb|ADI70179.1| GTP-binding protein EngA [Streptococcus pneumoniae TCH8431/19A] gi|301794686|emb|CBW37137.1| GTP-binding protein EngA [Streptococcus pneumoniae INV104] gi|301802409|emb|CBW35163.1| GTP-binding protein EngA [Streptococcus pneumoniae INV200] gi|302598670|gb|EFL65708.1| GTP-binding protein EngA [Streptococcus pneumoniae BS455] gi|302636889|gb|EFL67378.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS292] gi|302640144|gb|EFL70599.1| GTP-binding protein EngA [Streptococcus pneumoniae SP-BS293] gi|302640564|gb|EFL70970.1| GTP-binding protein EngA [Streptococcus pneumoniae BS458] gi|302643614|gb|EFL73882.1| GTP-binding protein EngA [Streptococcus pneumoniae BS457] gi|302646708|gb|EFL76933.1| GTP-binding protein EngA [Streptococcus pneumoniae BS397] gi|306409871|gb|ADM85298.1| Predicted GTPase [Streptococcus pneumoniae AP200] gi|307616437|gb|EFN95628.1| GTP-binding protein EngA [Streptococcus mitis NCTC 12261] gi|307619540|gb|EFN98664.1| small GTP-binding domain protein [Streptococcus mitis SK564] gi|307621026|gb|EFO00106.1| small GTP-binding domain protein [Streptococcus mitis SK597] gi|321281654|gb|EFX58663.1| ribosome-associated GTPase EngA [Streptococcus sp. M334] gi|327389894|gb|EGE88239.1| GTP-binding protein engA [Streptococcus pneumoniae GA04375] gi|332074047|gb|EGI84525.1| GTP-binding protein engA [Streptococcus pneumoniae GA41301] gi|332199734|gb|EGJ13809.1| GTP-binding protein engA [Streptococcus pneumoniae GA41317] gi|332200267|gb|EGJ14340.1| GTP-binding protein engA [Streptococcus pneumoniae GA47368] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N ++ ++N +L+G N GKS+L+N +G I + TTR + ++ + Sbjct: 162 NLPNEYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTD 221 Query: 70 SQ-IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 Q +DT G+ + Y K + + I +D+V +V+++ RE I Sbjct: 222 GQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGF 281 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K +I+++NK D ++ Sbjct: 282 AHEAGK---GMIIVVNKWDTLE 300 >gi|298293756|ref|YP_003695695.1| tRNA modification GTPase TrmE [Starkeya novella DSM 506] gi|296930267|gb|ADH91076.1| tRNA modification GTPase TrmE [Starkeya novella DSM 506] Length = 458 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 11/165 (6%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +A+ G NAGKS+L+N +++IV+ + TTR ++ + ++ +DT G Sbjct: 224 REGALIAIAGLPNAGKSSLINALAAREIAIVSDEPGTTRDVLEVALDLSGHKVTLVDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + A+ IR + + I AD+V V D+ ++ A + L L+ NK Sbjct: 284 LREAEGKVEAEGIRRAHARIAEADLVLWVHDAAEGPPPVARPQIEAAA--GAELWLVANK 341 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 +D E + + ++ F +SA G G + +++ + + Sbjct: 342 LD--------EVGAVPPTGGWTDRAFAISAKYGTGLEALIDAVGA 378 >gi|288924558|ref|ZP_06418495.1| ribosome-associated GTPase EngA [Prevotella buccae D17] gi|315607420|ref|ZP_07882416.1| ribosome-associated GTPase EngA [Prevotella buccae ATCC 33574] gi|288338345|gb|EFC76694.1| ribosome-associated GTPase EngA [Prevotella buccae D17] gi|315250852|gb|EFU30845.1| ribosome-associated GTPase EngA [Prevotella buccae ATCC 33574] Length = 437 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S I+++D+ L++D+ R ++ ++ + I K + L++++NK D Sbjct: 239 VSEDLEFYSVMRSIRAIENSDVCILMIDATRGIETQDMNIFQLIQKNNKSLVVVVNKWDL 298 Query: 143 V--KPERLLEQAEIA 155 V K +++++ E A Sbjct: 299 VEDKTQKVIDTFENA 313 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 13/170 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR ++ +IV+ TTR G + +DT G + Sbjct: 2 ASLVAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRL--ILI 136 + D + + R + AD+V +VD + + D +++A R ++L IL+ Sbjct: 62 VKSDDIFEDAIRRQVLVATEEADLVLFLVD----VSTGVTDWDEDVAMILRRTKLPVILV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK+D E AE + + +SA G G D+L+ + + Sbjct: 118 ANKVD--NSSEYYEAAEFYK--LGLGDPHCISAATGGGTGDLLDLILEKM 163 >gi|270293072|ref|ZP_06199283.1| ribosome-associated GTPase EngA [Streptococcus sp. M143] gi|270279051|gb|EFA24897.1| ribosome-associated GTPase EngA [Streptococcus sp. M143] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|218513162|ref|ZP_03510002.1| GTP-binding protein [Rhizobium etli 8C-3] Length = 242 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 33/197 (16%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 5 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK-------EIAKRSSRLIL 135 ++ R + + AD++ V D S + + D+++ + A+ RLI Sbjct: 65 LPTHLVAAFRATLEEVLEADLILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAGKRLIE 124 Query: 136 ILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC--------- 183 + NKID ++ E ++++A A+ +V VSA G G D +++ + Sbjct: 125 VWNKIDRLESEVHDAMVQKAAGASNVV------AVSAVSGEGVDTLMDEISRRLSGVMTE 178 Query: 184 -------STLPLAPWVY 193 L L PW+Y Sbjct: 179 TTIRLPVDKLALLPWLY 195 >gi|208435318|ref|YP_002266984.1| putative thiophene/furanoxidation protein [Helicobacter pylori G27] gi|208433247|gb|ACI28118.1| putative thiophene/furanoxidation protein [Helicobacter pylori G27] Length = 404 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF Q G +++VG NAGKS+L+N + + ++V+ TTR + Sbjct: 147 QIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 206 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DI+ V D + L+ Sbjct: 207 EEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFT 266 Query: 122 LLKEIAKRSSRLILILNKID 141 ++ + + I++LNK D Sbjct: 267 IIDALNRAKKPCIVVLNKND 286 >gi|169635754|emb|CAQ16331.1| t-RNA modification GTPase protein [Pseudomonas syringae] Length = 458 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ ++ + I AD V LVVD+ Sbjct: 279 DQVEKIGVQRALKAIGEADRVLLVVDA 305 >gi|148243337|ref|YP_001228494.1| tRNA modification GTPase TrmE [Synechococcus sp. RCC307] gi|205829180|sp|A5GW82|MNME_SYNR3 RecName: Full=tRNA modification GTPase mnmE gi|147851647|emb|CAK29141.1| tRNA modification GTPase [Synechococcus sp. RCC307] Length = 453 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 4/137 (2%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 ++ + ++D R VA++G N GKS+L+N G + +IVT TTR ++ Sbjct: 210 QLVLDGQQAQLLRDGLR---VAIIGRPNVGKSSLLNALSGHERAIVTDLPGTTRDLLDYD 266 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 + + I LDT GI + D +L I S + AD V L+ D R + L Sbjct: 267 LVLQGVPITLLDTAGIRSTADRVEQLGIERSRAAFASADAVVLLYDLSRGWSPDDSALRN 326 Query: 125 EIAKRSSRLILILNKID 141 E+ + L+++ NK D Sbjct: 327 EVPD-GTPLLVVGNKSD 342 >gi|126736006|ref|ZP_01751750.1| GTP-binding protein EngA [Roseobacter sp. CCS2] gi|126714563|gb|EBA11430.1| GTP-binding protein EngA [Roseobacter sp. CCS2] Length = 485 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 7/161 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR VG K+++V + TR + G + + +D+ G+ A Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEGRIADLRFTVIDSAGLEEA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKID 141 DS M RL+ ++ AD VCL + R + ++ +I K+++ +IL NK + Sbjct: 64 TDDSLQGRMRRLTERAVEMAD-VCLFMIDARAGVLPADEVFADILRKKNANVILAANKGE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + + +A + + + +SA G G ++++ L Sbjct: 123 GKAADASILEAYA----LGLGEPIRMSAEHGEGMGELMDVL 159 >gi|122701399|emb|CAL88089.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALDL 168 >gi|254228662|ref|ZP_04922086.1| GTP-binding protein EngA [Vibrio sp. Ex25] gi|262395114|ref|YP_003286968.1| GTP-binding protein EngA [Vibrio sp. Ex25] gi|151938841|gb|EDN57675.1| GTP-binding protein EngA [Vibrio sp. Ex25] gi|262338708|gb|ACY52503.1| GTP-binding protein EngA [Vibrio sp. Ex25] Length = 498 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 7/163 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL NR + ++V TR G +E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ M S + I AD+V +VD L + + + K +L++NKID Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDAAIAAHLRKIEKPAMLVVNKIDG 123 Query: 143 VKPERLLEQAEIANK-LVFIEKTFMVSATKGHGCDDVLNYLCS 184 + + A A+ + ++ + ++A G G +L S Sbjct: 124 IDAD-----AACADFWQLGVDDMYQIAAAHGRGVTALLERALS 161 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 19/193 (9%) Query: 2 EMGEITFFNEHKDFVQDNSRSGC-------------VALVGATNAGKSTLVNRFVGAKVS 48 E+ ++T F + + V+D + +A++G N GKSTL NR +G + Sbjct: 176 EIEDLTGFEDEEPLVEDYTEEDAEAEFKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERV 235 Query: 49 IVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIV 105 +V TTR + + + V +DT G+ ++ K + + ++ A++V Sbjct: 236 VVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVV 295 Query: 106 CLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE-- 162 LV+D+ + LL +++ +NK D + + + + E+ +L F++ Sbjct: 296 LLVIDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDSDVKESVKKELDRRLGFVDFA 355 Query: 163 KTFMVSATKGHGC 175 + +SA G G Sbjct: 356 RIHFISALHGTGV 368 >gi|288801153|ref|ZP_06406609.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 299 str. F0039] gi|288332087|gb|EFC70569.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 299 str. F0039] Length = 456 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 7/119 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TN GKSTL+N + + +IV+ TTR ++ + F+DT GI N Sbjct: 224 VAIIGKTNVGKSTLLNCLLKEERAIVSDIHGTTRDVIEDTIEINNITFRFIDTAGIRNTD 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRLILILNKID 141 D+ L I ++ + A I+ VVD ++ + + E+ K++ +LI++ NK D Sbjct: 284 DTVENLGIERTYKKLSEAIIILWVVD-----EIPTKEEIVEMQKQTINKKLIIVCNKSD 337 >gi|50364829|ref|YP_053254.1| tRNA modification GTPase TrmE [Mesoplasma florum L1] gi|81392031|sp|Q6F2A3|MNME_MESFL RecName: Full=tRNA modification GTPase mnmE gi|50363385|gb|AAT75370.1| tRNA modification GTPase [Mesoplasma florum L1] Length = 452 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 47/92 (51%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N+ A+VG TN GKS+L+N + +IVT TTR IV G ++ + + +DT Sbjct: 214 NTNGIKTAIVGKTNVGKSSLLNALLNEDKAIVTDIHGTTRDIVTGEINLENISLNLIDTA 273 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 GI D L I S I A++V VVD Sbjct: 274 GIRETTDIVEGLGIEKSLKIIDEAELVLFVVD 305 >gi|322375706|ref|ZP_08050218.1| ribosome-associated GTPase EngA [Streptococcus sp. C300] gi|321279414|gb|EFX56455.1| ribosome-associated GTPase EngA [Streptococcus sp. C300] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCV 143 K D + Sbjct: 295 KWDTL 299 >gi|229029283|ref|ZP_04185373.1| GTP-binding protein engA [Bacillus cereus AH1271] gi|229172241|ref|ZP_04299805.1| GTP-binding protein engA [Bacillus cereus MM3] gi|228611229|gb|EEK68487.1| GTP-binding protein engA [Bacillus cereus MM3] gi|228732031|gb|EEL82923.1| GTP-binding protein engA [Bacillus cereus AH1271] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVD-- 122 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +++I + L F E F +S T G G D+L+ + P Sbjct: 123 NPEM---RSDIYDFYALGFGEP-FPISGTHGLGLGDLLDEAANHFP 164 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +I+++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 AVK 300 >gi|240143896|ref|ZP_04742497.1| GTP-binding protein HflX [Roseburia intestinalis L1-82] gi|257204088|gb|EEV02373.1| GTP-binding protein HflX [Roseburia intestinalis L1-82] Length = 414 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 17/170 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 A+VG TNAGKSTL+N GA V T R + +I+ DT G F Sbjct: 203 VAAIVGYTNAGKSTLLNHLTGAGVLEEDKLFATLDPTTRVLELPGRQEILLTDTVG-FIR 261 Query: 84 KDSYHKLMIRLSWSTI---KHADIVCLVVDS---HRELKVNI-HDLLKEIAKRSSRLILI 136 K +H +I ST+ K+AD + VVD+ R+ +++I +D L ++ R +I + Sbjct: 262 KLPHH--LIEAFKSTLEEAKYADYIVHVVDASNPQRDKQMHIVYDTLYQLDIREKTVITL 319 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D V E + + + T VSA KG G +++ C+ L Sbjct: 320 FNKQDQVTDEEPIRDFK-------ADYTLAVSAKKGTGLEELKELFCTLL 362 >gi|122702571|emb|CAL88475.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER E+A A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDK-ER--ERA-YAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122700729|emb|CAL87953.1| GTPase [Helicobacter pylori] gi|122701679|emb|CAL88229.1| GTPase [Helicobacter pylori] gi|122702581|emb|CAL88480.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|15611840|ref|NP_223491.1| GTP-binding protein EngA [Helicobacter pylori J99] gi|8134435|sp|Q9ZL09|DER_HELPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|4155327|gb|AAD06341.1| putative [Helicobacter pylori J99] Length = 462 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 123 NKIDNDKE----KERSYAFSSFGTPKSFNISVSHNRGISALIDAVLNALNL 169 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALDRTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|317472412|ref|ZP_07931737.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA] gi|316900132|gb|EFV22121.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA] Length = 457 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 15/157 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+++N +G + +IVT TTR + + + +DT GI + D Sbjct: 224 AIVGKPNAGKSSILNVLLGKERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDD 283 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 K+ + + ++ AD+V VVD+ L +++K + + ++I++LNK D Sbjct: 284 VVEKIGVDKARDSVIKADLVLYVVDTSVPLTKEDEEIMKLLNGK--QVIVLLNKSDL--- 338 Query: 146 ERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDV 178 E + ++E F+++ F VSA +G +D+ Sbjct: 339 ETKVSESE------FLDRGFQNIVPVSAKSLYGLEDL 369 >gi|148984151|ref|ZP_01817446.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP3-BS71] gi|147923440|gb|EDK74553.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP3-BS71] gi|301800517|emb|CBW33156.1| GTP-binding protein EngA [Streptococcus pneumoniae OXC141] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N ++ ++N +L+G N GKS+L+N +G I + TTR + ++ + Sbjct: 162 NLPNEYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTD 221 Query: 70 SQ-IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 Q +DT G+ + Y K + + I +D+V +V+++ RE I Sbjct: 222 GQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGF 281 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K +I+++NK D ++ Sbjct: 282 AHEAGK---GMIIVVNKWDTLE 300 >gi|122700919|emb|CAL88048.1| GTPase [Helicobacter pylori] gi|122701631|emb|CAL88205.1| GTPase [Helicobacter pylori] gi|122702527|emb|CAL88453.1| GTPase [Helicobacter pylori] gi|292806412|gb|ADE42336.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122700779|emb|CAL87978.1| GTPase [Helicobacter pylori] gi|122700875|emb|CAL88026.1| GTPase [Helicobacter pylori] gi|122701457|emb|CAL88118.1| GTPase [Helicobacter pylori] gi|122701471|emb|CAL88125.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|159900085|ref|YP_001546332.1| GTP-binding protein EngA [Herpetosiphon aurantiacus ATCC 23779] gi|238687093|sp|A9B567|DER_HERA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|159893124|gb|ABX06204.1| small GTP-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 455 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 13/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N+ +G + +I+ + TTR G +DT G+ Sbjct: 6 VAIVGRPNVGKSTLFNKLIGERRAIIADEAGTTRDRQYGETIWNGRVFTIVDTAGLLVGD 65 Query: 85 DSYHKLMIRLSWST-------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILI 136 D + + + T I AD++ +VD RE + + + + +RSS+ ++L Sbjct: 66 DDPNLPLAEIVRRTHQQAQLAIDEADVIVFMVDV-REGLIAADEEVAALLRRSSKPVVLG 124 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +NK D +R E N + + +SA G G D+L+ + LP Sbjct: 125 VNKADT--EDRRQNAVEFYN--LGLGDPIALSAYHGTGSGDLLDEIVRHLP 171 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +++ S +A+VG N GKS+L+N+ VG + +V++ TTR + ++ K I +D Sbjct: 177 EEDDNSLKIAIVGRPNVGKSSLLNKLVGEERVVVSNIPGTTRDSIDTKLTYKGIPITLID 236 Query: 77 TPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T GI + + + + + I+ I ++VD+ + + + + L Sbjct: 237 TAGIRRRGSIEQGIERYSVLRTMKAIERCHIALILVDAQEGPTAQDTHVAGMVLEANKGL 296 Query: 134 ILILNKIDCVKPERL-LEQAEIANKLVFIEKTF----MVSATKGHGCDDVLN 180 +I+NK D + + E A+ VF + +SA G VL+ Sbjct: 297 AIIVNKWDLIDKAKFSYEDAKTTMSQVFHFAPYAPIEFISAKTGQRATKVLD 348 >gi|15890077|ref|NP_355758.1| tRNA modification GTPase TrmE [Agrobacterium tumefaciens str. C58] gi|205829053|sp|A9CHB2|MNME_AGRT5 RecName: Full=tRNA modification GTPase mnmE gi|15158062|gb|AAK88543.1| tRNA modification GTPase [Agrobacterium tumefaciens str. C58] Length = 442 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 13/116 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG NAGKSTL+N G +V+IVT TTR ++ ++ + DT GI + Sbjct: 222 VALVGEPNAGKSTLLNALSGREVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTAGIRETQ 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLV-------------VDSHRELKVNIHDLLKEIA 127 D + +R + T + AD++ ++ D+ R L+V LL+ A Sbjct: 282 DVVEREGVRRAVLTAETADLILILQDNDSTPKQSIGSFDNQRSLRVRTKTLLRSRA 337 >gi|71408039|ref|XP_806448.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener] gi|70870198|gb|EAN84597.1| small GTP-binding protein, putative [Trypanosoma cruzi] Length = 571 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 12/142 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +ALVG TN+GKS+L+NR VG + S + +TR V K ++ +DT G+ Sbjct: 305 IALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELPCIYKGRKVKLIDTAGLTRNR 364 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 F A + + LS + I++A +V +V D+ E N +D+ L +A +L N Sbjct: 365 FRADRDFIGRIHDLSVNEIRYAHVVIVVFDAT-EGHPNKYDMAVLHSVAAEGRPFLLCAN 423 Query: 139 KIDCVKPERLLEQAEIANKLVF 160 K D V L+Q+ A + F Sbjct: 424 KWDAV-----LDQSATAEAIDF 440 Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 14/135 (10%) Query: 25 VALVGATNAGKSTLVNRF-----VGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 VA+VG N+GKS+L N + + +IV TR V G + +DTPG Sbjct: 105 VAIVGRMNSGKSSLFNLLSEDPTMPHRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTPG 164 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + N K ++ ++ T++ AD V +L DL+ + + +++NK Sbjct: 165 MVNGK------LVEEAFRTVETADAAIFVTSVDEDLHSAEFDLIHYLQLKCMPTFVLVNK 218 Query: 140 IDCV---KPERLLEQ 151 +D V + +R+LE+ Sbjct: 219 MDLVPLDEEDRVLER 233 >gi|119775495|ref|YP_928235.1| GTP-binding protein EngA [Shewanella amazonensis SB2B] gi|166225853|sp|A1S859|DER_SHEAM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119767995|gb|ABM00566.1| small GTP-binding protein domain [Shewanella amazonensis SB2B] Length = 488 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 9/177 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ L + + + R ++ NK+D + Sbjct: 64 EEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLAIAQHLRSRDKITFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + E + + + + ++A +G G ++ Y LAP+ + + D Sbjct: 124 DADSAC--GEFWQ--LGLGEVYQMAAAQGRGVTGLVEY-----ALAPFAEAMGLVRD 171 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V + TTR V + V +DT G+ + Sbjct: 202 LAIIGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSVYIPMERDGRNYVLIDTAGV-RRR 260 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+++ + S ++ +++V LV+D+H + LL + L+L +NK Sbjct: 261 ARVHEVIEKFSVIKTLKAVEDSNVVLLVIDAHEGIAEQDLGLLGFVLNSGRALVLAVNKW 320 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 D + + + + E+ +L FI+ + +SA G G Sbjct: 321 DGLDQDVKDRVKTELDRRLGFIDFARIHFISALHGTGV 358 >gi|332878607|ref|ZP_08446327.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683508|gb|EGJ56385.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 469 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKSTL+N + + +IV+ TTR + ++ F+DT GI Sbjct: 227 VAIVGKPNAGKSTLLNALLNEERAIVSDIAGTTRDTIEEVLHIGGIAFRFIDTAGIRETH 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + ++ + I A IV + + + + ++ +KE + +L+ NKID Sbjct: 287 DAIEAIGVQRAKEKIAKAQIVIFLYNQYDDTVADVVAFVKEHYREGVFFVLVHNKID 343 >gi|321311014|ref|YP_004193343.1| tRNA modification GTPase [Mycoplasma haemofelis str. Langford 1] gi|319802858|emb|CBY93504.1| tRNA modification GTPase [Mycoplasma haemofelis str. Langford 1] Length = 431 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG NAGKS+L+N +G IV+ + TTR V + + +DT GI+ Sbjct: 217 VVLVGRPNAGKSSLINHLIGKDKIIVSPEAGTTRDTVEVDYQFDDYLLTLVDTAGIYEVD 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D IR S I+ AD++ +V E K N+ +L+ E +S +I I K D Sbjct: 277 DFLTNESIRRSKDAIRDADLLVHLVS--LEDKKNLKELVGEFGGKS--VITIFTKSDLFP 332 Query: 145 PER 147 R Sbjct: 333 HTR 335 >gi|306824736|ref|ZP_07458080.1| ribosome-associated GTPase EngA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432947|gb|EFM35919.1| ribosome-associated GTPase EngA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|292806592|gb|ADE42426.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNVLNL 168 >gi|291519504|emb|CBK74725.1| ribosome-associated GTPase EngA [Butyrivibrio fibrisolvens 16/4] Length = 441 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G ++SIV TR + VS +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVSWLNYDFTMIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D M + I AD++ +VD + L+ + + + + +IL++NK+D Sbjct: 65 TNDIILSQMREQAQIAIDTADVIIFLVDVKQGLQDSDSKVADMLRRSHKPVILVVNKVDS 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + + E N + I VSA+ G D+L+ + P Sbjct: 125 FERD-MADVYEFYN--LGIGDPIPVSASSRLGFGDMLDKVVEYFP 166 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+L+N+ G + IV+ TTR V V +F+DT G+ Sbjct: 180 IAVIGKPNVGKSSLINKLCGEERVIVSDIAGTTRDAVDTRVRYNHKDYIFIDTAGLRRKS 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + ++++ AD+V +++D+ + + +R +I+ +NK D Sbjct: 240 KIKEDLERYSIVRAVASVEKADVVIIMIDATEGVTEQDAKIAGIAHERGKGIIICVNKWD 299 Query: 142 CVK 144 ++ Sbjct: 300 AIE 302 >gi|293365923|ref|ZP_06612626.1| ribosome-associated GTPase EngA [Streptococcus oralis ATCC 35037] gi|307702327|ref|ZP_07639285.1| small GTP-binding domain protein [Streptococcus oralis ATCC 35037] gi|315613624|ref|ZP_07888531.1| ribosome-associated GTPase EngA [Streptococcus sanguinis ATCC 49296] gi|291315601|gb|EFE56051.1| ribosome-associated GTPase EngA [Streptococcus oralis ATCC 35037] gi|307624130|gb|EFO03109.1| small GTP-binding domain protein [Streptococcus oralis ATCC 35037] gi|315314315|gb|EFU62360.1| ribosome-associated GTPase EngA [Streptococcus sanguinis ATCC 49296] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|229096095|ref|ZP_04227068.1| GTP-binding protein engA [Bacillus cereus Rock3-29] gi|229102207|ref|ZP_04232916.1| GTP-binding protein engA [Bacillus cereus Rock3-28] gi|229115051|ref|ZP_04244461.1| GTP-binding protein engA [Bacillus cereus Rock1-3] gi|228668191|gb|EEL23623.1| GTP-binding protein engA [Bacillus cereus Rock1-3] gi|228681108|gb|EEL35276.1| GTP-binding protein engA [Bacillus cereus Rock3-28] gi|228687055|gb|EEL40960.1| GTP-binding protein engA [Bacillus cereus Rock3-29] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVD-- 122 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +++I + L F E F +S T G G D+L+ + P Sbjct: 123 NPEM---RSDIYDFYALGFGEP-FPISGTHGLGLGDLLDEAANHFP 164 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +I+++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 AVK 300 >gi|194770800|ref|XP_001967476.1| GF20720 [Drosophila ananassae] gi|190618486|gb|EDV34010.1| GF20720 [Drosophila ananassae] Length = 493 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 17/160 (10%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + ++D R+ ++GA N GKS+L+N V+IVT + TTR I+ + + +V Sbjct: 234 ELLRDGVRT---VIIGAPNVGKSSLLNLLCQRSVAIVTDQAGTTRDIIETMHNFGGYPVV 290 Query: 74 FLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---- 128 F DT G+ N DS + ++ + + +D++ L+ D+ +++ D + + Sbjct: 291 FSDTAGLRKNTTDSIEQEGMQRAKDCLAQSDMILLMADAKTIREIDHEDSVSQFVDSYLQ 350 Query: 129 ---------RSSRLILILNKIDCVKPERLLEQAEIANKLV 159 RL L+ NK D + P + + +++N L Sbjct: 351 ELDIPVDLCNGKRLQLVANKTDTLSPTEIQQLEKLSNVLA 390 >gi|167766870|ref|ZP_02438923.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1] gi|317499289|ref|ZP_07957562.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA] gi|167711418|gb|EDS21997.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1] gi|291558409|emb|CBL37209.1| tRNA modification GTPase trmE [butyrate-producing bacterium SSC/2] gi|316893458|gb|EFV15667.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA] Length = 458 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 8/138 (5%) Query: 10 NEHKDFVQ--DNSR---SGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 N+ +F++ DN R G +VG NAGKS+++N +G + +IVT TTR + Sbjct: 203 NQLNEFLENADNGRILKEGIQTVIVGKPNAGKSSVLNVLLGEERAIVTDIAGTTRDTLEE 262 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 + K + +DT GI + D K+ + + + AD+V VVD+ L + +++ Sbjct: 263 SIQIKGIPLNIIDTAGIRDTNDLIEKIGVDKAKDLLTKADLVLYVVDTSDPLTKDDEEIM 322 Query: 124 KEIAKRSSRLILILNKID 141 + I + + I++LNK D Sbjct: 323 ELIEDKQT--IVLLNKAD 338 >gi|221069752|ref|ZP_03545857.1| tRNA modification GTPase TrmE [Comamonas testosteroni KF-1] gi|220714775|gb|EED70143.1| tRNA modification GTPase TrmE [Comamonas testosteroni KF-1] Length = 475 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ ++ Sbjct: 233 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSD 292 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 D ++ I +W I AD V + D R Sbjct: 293 DEVERIGIARAWDEIAAADAVLFLHDLTR 321 >gi|20093139|ref|NP_619214.1| GTP-binding protein [Methanosarcina acetivorans C2A] gi|19918478|gb|AAM07694.1| GTP-binding protein [Methanosarcina acetivorans C2A] Length = 364 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S G V LVG + GKSTL+N+ GAK + ++ TT ++V G++ K + I FLD PG Sbjct: 60 SGDGTVTLVGFPSVGKSTLLNKVTGAKSEVGAYEF-TTLTVVPGVLEHKGATIQFLDVPG 118 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 + S + + S I+++D+V ++D Sbjct: 119 LVKGASS-GRGRGKEVISVIRNSDMVIFLLD 148 >gi|326780198|ref|ZP_08239463.1| ribosome-associated GTPase EngA [Streptomyces cf. griseus XylebKG-1] gi|326660531|gb|EGE45377.1| ribosome-associated GTPase EngA [Streptomyces cf. griseus XylebKG-1] Length = 489 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 53 VLAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQD 112 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVDS ++K + + ++L NK+D Sbjct: 113 VLGLDASVAAQAEYAIETADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKVDG- 171 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E A + + + + VS+ G G D+L+ + LP AP Sbjct: 172 ---QSGEADATALWSLGLGEPYPVSSLHGRGTGDMLDAVLEALPDAP 215 Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +AL+G N GKS+L+N+ G +V TTR V +++ F+DT GI Sbjct: 229 IALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWKFIDTAGIRRRV 288 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++DS + V ++ + L++ N Sbjct: 289 HLQEGADYYASLR---TAAAVEKAEVAVVLIDSSESISVQDQRIITMAVEAGRALVVAFN 345 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 346 KWDTLDEER 354 >gi|229016860|ref|ZP_04173788.1| GTP-binding protein engA [Bacillus cereus AH1273] gi|229023066|ref|ZP_04179580.1| GTP-binding protein engA [Bacillus cereus AH1272] gi|228738212|gb|EEL88694.1| GTP-binding protein engA [Bacillus cereus AH1272] gi|228744421|gb|EEL94495.1| GTP-binding protein engA [Bacillus cereus AH1273] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVD-- 122 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +++I + L F E F +S T G G D+L+ + P Sbjct: 123 NPEM---RSDIYDFYALGFGEP-FPISGTHGLGLGDLLDEAANHFP 164 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +I+++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 AVK 300 >gi|223043424|ref|ZP_03613470.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14] gi|314934963|ref|ZP_07842322.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87] gi|222443213|gb|EEE49312.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14] gi|313652893|gb|EFS16656.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87] Length = 459 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L + L E+ K +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTED-DQTLYEVVKNED-VIVIINK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + E E+ + I+ + + K G D++ Sbjct: 337 TDLEPRLDIDEVKEMIGDMPLIQTSML----KQEGIDEL 371 >gi|254509317|ref|ZP_05121407.1| GTP-binding protein HflX [Vibrio parahaemolyticus 16] gi|219547746|gb|EED24781.1| GTP-binding protein HflX [Vibrio parahaemolyticus 16] Length = 429 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TVSLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIELSDVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE +HD+L+EI ++++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVHDVLEEIEANEIPALIVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + + I + +T VSA +G G + + L L Sbjct: 317 NKIDNLDG----QNPRIERDDEGVVQTVWVSAMEGKGIELLFEALTERL 361 >gi|122702549|emb|CAL88464.1| GTPase [Helicobacter pylori] gi|292806680|gb|ADE42470.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452843|emb|CBL87857.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRVLNL 168 >gi|99905851|gb|ABF68620.1| YphC [Helicobacter pylori] gi|122700757|emb|CAL87967.1| GTPase [Helicobacter pylori] gi|122700893|emb|CAL88035.1| GTPase [Helicobacter pylori] gi|122701347|emb|CAL88063.1| GTPase [Helicobacter pylori] gi|122702159|emb|CAL88270.1| GTPase [Helicobacter pylori] gi|122702165|emb|CAL88273.1| GTPase [Helicobacter pylori] gi|122702243|emb|CAL88312.1| GTPase [Helicobacter pylori] gi|122702253|emb|CAL88317.1| GTPase [Helicobacter pylori] gi|122702257|emb|CAL88319.1| GTPase [Helicobacter pylori] gi|122702351|emb|CAL88366.1| GTPase [Helicobacter pylori] gi|122702359|emb|CAL88370.1| GTPase [Helicobacter pylori] gi|122702371|emb|CAL88376.1| GTPase [Helicobacter pylori] gi|122702385|emb|CAL88383.1| GTPase [Helicobacter pylori] gi|122702627|emb|CAL88503.1| GTPase [Helicobacter pylori] gi|242255952|gb|ACS88960.1| GTPase [Helicobacter pylori] gi|292806456|gb|ADE42358.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806540|gb|ADE42400.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806544|gb|ADE42402.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806630|gb|ADE42445.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452827|emb|CBL87849.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453507|emb|CBL87863.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|86152727|ref|ZP_01070932.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843612|gb|EAQ60822.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni HB93-13] Length = 442 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ ++ + LS +++ ADI+ V D+ R + +A ++ ILNK D Sbjct: 277 DTIEQIGVALSKKSLEDADIILAVFDASRVQDKEDGKIFDLLANTDKKIFWILNKSD 333 >gi|325199077|gb|ADY94533.1| tRNA modification GTPase TrmE [Neisseria meningitidis G2136] Length = 427 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 170 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 229 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 TR VR + + +DT G+ D ++ I S + AD+ ++VD Sbjct: 230 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVD 283 >gi|311105363|ref|YP_003978216.1| GTP-binding protein EngA [Achromobacter xylosoxidans A8] gi|310760052|gb|ADP15501.1| GTP-binding protein EngA [Achromobacter xylosoxidans A8] Length = 450 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 VALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 6 VVALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGEIPFIVIDTGGFEPV 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS-SRLILILNKID 141 AKD M R + I AD+V +VD+ + + H++ + + K R++L +NK + Sbjct: 66 AKDGILLEMARQTRQAIAEADVVVFLVDARAGINAHDHEIAQLLRKSGQQRVLLAVNKAE 125 Query: 142 CVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + + E E+ + + + +SA G G D++ L Sbjct: 126 GMGAGSAISEFHELG-----LGQPYPISAAHGDGIVDLIELALQDL 166 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 10/163 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N +G + I TTR + + +DT G+ Sbjct: 187 LAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIDFERDGRRYTLIDTAGLRKRG 246 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK-- 139 ++ K + + I+ +++V L++D+ E+ + + + +++ +NK Sbjct: 247 KVFEAVEKFSVIKTLQAIEASNVVLLMLDAQTEISEQDAHIAGFVLETGRAVVVAINKWD 306 Query: 140 -IDCVKPERLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVL 179 +D ER+ + E KL F+ M +SA +G G +L Sbjct: 307 GLDGEAKERI--EREFQRKLRFLSFARMHTISALRGQGVKPLL 347 >gi|168703924|ref|ZP_02736201.1| probable GTP-binding protein [Gemmata obscuriglobus UQM 2246] Length = 495 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP--GIF 81 VA+VG N GKS+L N G ++SIV TR V +V +DT GI Sbjct: 5 LVAIVGRPNVGKSSLFNWLAGRRISIVDPTAGVTRDRVSTVVEHGGRVWDLMDTGGIGIV 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + D + ++ ++ I+ A +V +VD + D+ + + ++L+ NK D Sbjct: 65 DVDDLTADVERQIQFA-IESAAVVVFMVDVREGVVPLDEDVAARLRAINKPVVLVANKAD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K L EQA N+L + E VSA + G D++ + + LP Sbjct: 124 TAK---LGEQAGEFNRLGYGEP-LCVSADQKLGKDELFEAILAQLP 165 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 15/130 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG NAGKST +N G + IV+ TTR V + V +DT G+ Sbjct: 179 MLAIVGRRNAGKSTFINSLAGGERVIVSEIPGTTRDSVDVRIERDGKSYVAIDTAGVRKT 238 Query: 84 KD--------SYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLI 134 S H+ + +++ AD+V D+ HR +V+ L + + + + I Sbjct: 239 AKMGTNIEFYSNHR-----AQRSVRRADVVMHFFDARHRVSRVD-KQLAEYVVEENKPAI 292 Query: 135 LILNKIDCVK 144 ++NK D VK Sbjct: 293 FVVNKWDLVK 302 >gi|49476318|ref|YP_034359.1| tRNA modification GTPase TrmE [Bartonella henselae str. Houston-1] gi|81647466|sp|Q6G1K8|MNME_BARHE RecName: Full=tRNA modification GTPase mnmE gi|49239126|emb|CAF28430.1| Thiophene and furan oxidizer [Bartonella henselae str. Houston-1] Length = 435 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 57/111 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + +VGA N+GKS+++NR G V+IVT + TTR + + + +DT G Sbjct: 217 IVIVGAPNSGKSSIMNRLAGKPVAIVTEEAGTTRDALEVRLVLGGLPVFLIDTAGFRETD 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 + +L I ++ ++ AD+V LV D +V + + EI + ++ L Sbjct: 277 NKIEQLGIEVAKQHVRDADLVILVYDMQNPKEVYLPETSAEIWRVGNKFDL 327 >gi|37999702|sp|Q8G6A8|DER_BIFLO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|23325955|gb|AAN24555.1| probable GTP binding protein [Bifidobacterium longum NCC2705] Length = 463 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 27 GVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 86 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 87 DVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDD 146 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L AE + + + + +SA G G D+L+ L A Sbjct: 147 QASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALDKLKQA 189 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IV+ +F+DT GI K Sbjct: 204 VALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAGI---K 260 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + + ++ ++L+ N Sbjct: 261 RRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLVFN 320 Query: 139 KIDCV 143 K D + Sbjct: 321 KWDAM 325 >gi|325291447|ref|YP_004267628.1| tRNA modification GTPase trmE [Syntrophobotulus glycolicus DSM 8271] gi|324966848|gb|ADY57627.1| tRNA modification GTPase trmE [Syntrophobotulus glycolicus DSM 8271] Length = 466 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 19/196 (9%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G N GKS+L+N + + +IVT TTR +R V + +DT GI + D Sbjct: 225 IAGIPNVGKSSLLNALLREERAIVTDIPGTTRDEIREYVKIGGVLLHLIDTAGIRKSNDP 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I SW I AD+V L++D +H + + D L+ + + + I++ NKID Sbjct: 285 VEMIGINRSWKAIDEADVVLLLLDVTDKENHSDGCLT-EDELRILKDYAEKTIILYNKID 343 Query: 142 CVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + L A++ N++ KT + SA K G ++ L V+ D Sbjct: 344 LLSSYHKADFLIPAQVKNQI----KTILFSAKKRIGFKEL------EAELEKRVFGGDSA 393 Query: 199 SDLPMFHFTAEITREK 214 PM +I+ K Sbjct: 394 VMKPMLSNLRQISEMK 409 >gi|307610240|emb|CBW99801.1| hypothetical protein LPW_15641 [Legionella pneumophila 130b] Length = 462 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A G N GKSTL+NR +G + +V TTR + + ++ Q V +DT G+ Sbjct: 177 IAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRKS 236 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + IK A + L++D++ + +LL I + L++ +NK D Sbjct: 237 RIDEKIEKFSVIKTLQAIKEAHVCLLLLDANEGITDQDMNLLGFIIESGKALVIAVNKWD 296 Query: 142 CVKPERLLE-QAEIANKLVF--IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ++ E + ++E++ +L F K +SA G G + + A +S ++ Sbjct: 297 GLEEEHKEKIKSELSRRLHFANFAKIRFISALHGSGVGGLFKDINEAYHSAIQSFSTPKL 356 Query: 199 SDL 201 + L Sbjct: 357 TRL 359 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 9/177 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 LM R S + A+++ +VD L + + + K + ++ L++NK D + Sbjct: 64 DIEVDTLMSRQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + A+ + + I +SA+ G G +L + L P++ + +D Sbjct: 124 NED--IACADFQS--LGITDIHAISASHGGGISSLLEEI-----LEPFITEMHEATD 171 >gi|256784779|ref|ZP_05523210.1| hypothetical protein SlivT_09833 [Streptomyces lividans TK24] gi|289768666|ref|ZP_06528044.1| ATP/GTP-binding protein [Streptomyces lividans TK24] gi|289698865|gb|EFD66294.1| ATP/GTP-binding protein [Streptomyces lividans TK24] Length = 497 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 12/191 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + + VA+ G TNAGKS+L+NR GA V + T V Sbjct: 254 EIAEMKTGREIKRQERKRHKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 313 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 314 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPVPEEQLA 373 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++++ I+++NK D P + +L+ IEK VSA G D Sbjct: 374 AVREVIRDVGATDVPEIVVINKADMADP-------LVLQRLLRIEKRAIAVSARTGQNID 426 Query: 177 DVLNYLCSTLP 187 +L + + LP Sbjct: 427 QLLALIDNELP 437 >gi|149006625|ref|ZP_01830324.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP18-BS74] gi|147761923|gb|EDK68886.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP18-BS74] Length = 358 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +I + + + +S+ G G DVL+ + LP Sbjct: 123 NPEM---RNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTLE 300 >gi|159184763|ref|NP_354458.2| GTP-binding protein HFLX [Agrobacterium tumefaciens str. C58] gi|159140051|gb|AAK87243.2| GTP-binding protein HFLX [Agrobacterium tumefaciens str. C58] Length = 444 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 33/198 (16%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 207 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 266 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA-------KRSSRLIL 135 ++ R + + AD+V V D S + D+L+ + + R+I Sbjct: 267 LPTHLVAAFRATLEEVLEADLVLHVRDMSDPDNAAQSADVLRILGDLGIDEKEAEKRIIE 326 Query: 136 ILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC--------- 183 + NK+D ++PE ++++AE + + VSA G G D ++ + Sbjct: 327 VWNKVDRLEPEAHDAIMQRAEGRSDI------RAVSAITGEGVDALMEEISKRLSGVLTE 380 Query: 184 -------STLPLAPWVYS 194 LPL WVYS Sbjct: 381 TTVVLSVEQLPLISWVYS 398 >gi|28373695|pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A Switch Protein Containing Two Gtpase Domains Length = 439 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 8/132 (6%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF- 81 V +VG N GKSTL N+ V K +IV + TR V+ V +DT G+F Sbjct: 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N +D + ++ + I+ AD+V VVD R + L + K + IL+ NK + Sbjct: 62 NPQDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 121 Query: 142 C-------VKPE 146 VKPE Sbjct: 122 NLREFEREVKPE 133 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 9/161 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N + + ++V+ TTR V V + VF+DT G+ Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 242 Query: 85 DSYHKLMIRLS----WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + S +I+ AD+V +V+D+ + + +R +++ NK Sbjct: 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRXAGLXERRGRASVVVFNKW 302 Query: 141 DCV--KPERLLEQAEI-ANKLVFIEKTFMV--SATKGHGCD 176 D V + +R E ++ KL FI+ + ++ SA KG D Sbjct: 303 DLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID 343 >gi|313892548|ref|ZP_07826135.1| ribosome biogenesis GTPase Der [Dialister microaerophilus UPII 345-E] gi|313118945|gb|EFR42150.1| ribosome biogenesis GTPase Der [Dialister microaerophilus UPII 345-E] Length = 443 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK- 84 A+VG N GKSTLVN +G + S+V ++ TTR + + + K + V +DT G+ Sbjct: 180 AIVGRPNVGKSTLVNSLLGYERSLVADEMGTTRDAIDSLWTHKGKKFVLVDTAGMRKKNK 239 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + K + S I D+ V+D+ L ++ I + LIL++NK D Sbjct: 240 IDEPLEKYSVIRSIRAIDDCDVAVFVLDAKDMLTEQDKKIIGYIHEAGKGLILMVNKWDI 299 Query: 143 VKPE 146 V+ + Sbjct: 300 VEKD 303 Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 12/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKST++N +VSIV TR + + + +DT GI F Sbjct: 6 VAIVGRPNVGKSTIINGLAQKRVSIVEDLPGVTRDRIYCDAQWLDREFTLIDTGGIEFRE 65 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNK 139 + IR+ I+ AD++ V D L V I ++L++ K +++ +NK Sbjct: 66 EADQISDGIRMQAQLAIEEADVILFVTDVRVGLLDDDVTIAEMLRKTGK---PVVVAVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D E ++ E + + +SA+ G D+L+ + P Sbjct: 123 VDTEAQE--MDVYEFY--ALGLGDPIGISASNRVGFGDLLDKISEGFP 166 >gi|292806548|gb|ADE42404.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAILNALNL 168 >gi|118602976|ref|YP_904191.1| tRNA modification GTPase TrmE [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166234818|sp|A1AXR3|MNME_RUTMC RecName: Full=tRNA modification GTPase mnmE gi|118567915|gb|ABL02720.1| tRNA modification GTPase trmE [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 447 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N +IVT TTR +++ + + +DT G+ ++ Sbjct: 219 VVIAGKPNAGKSSLLNALTQESSAIVTDIAGTTRDVLKETICVNGMPLNIIDTAGLHDSD 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K I+ + I+ AD+V +V D+ + K + L K I + L+LI NK+D + Sbjct: 279 DKIEKEGIKRAHFEIERADVVLMVFDAQDD-KPDFSILPKNIDDQP--LLLIKNKVDLI 334 >gi|54294416|ref|YP_126831.1| GTP-binding protein EngA [Legionella pneumophila str. Lens] gi|81822385|sp|Q5WWG8|DER_LEGPL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|53754248|emb|CAH15725.1| hypothetical protein lpl1485 [Legionella pneumophila str. Lens] Length = 462 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A G N GKSTL+NR +G + +V TTR + + ++ Q V +DT G+ Sbjct: 177 IAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRKS 236 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + IK A + L++D++ + +LL I + L++ +NK D Sbjct: 237 RIDEKIEKFSVIKTLQAIKEAHVCLLLLDANEGITDQDMNLLGFIIESGKALVIAVNKWD 296 Query: 142 CVKPERLLE-QAEIANKLVF--IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ++ E + ++E++ +L F K +SA G G + + A +S ++ Sbjct: 297 GLEEEHKEKIKSELSRRLHFANFAKIRFISALHGSGVGGLFKDINEAYHSAIQSFSTPKL 356 Query: 199 SDL 201 + L Sbjct: 357 TRL 359 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 11/178 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 LM + S + A+++ +VD L + + + K + ++ L++NK D + Sbjct: 64 DIEVDTLMSKQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNKTDGI 123 Query: 144 KPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 E A+ + + I +SA+ G G +L + L P++ + +D Sbjct: 124 N-----EDIACADFQSLGITDIHAISASHGGGISSLLEEI-----LEPFITEMHEATD 171 >gi|330813897|ref|YP_004358136.1| GTP-binding protein EngA [Candidatus Pelagibacter sp. IMCC9063] gi|327486992|gb|AEA81397.1| GTP-binding protein EngA [Candidatus Pelagibacter sp. IMCC9063] Length = 267 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +++VG N GKST N+ +S V + TT+ ++ ++VF DT G+ Sbjct: 5 ISIVGKPNVGKSTFFNKIFSKNISKVADEPGTTKDVISESFLFGNEELVFHDTGGLKKKA 64 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +KD + + + I ++ IV ++D++ + N + + I + LI+I+NK D Sbjct: 65 KSKDENQSYITKECLTAINNSSIVIFMMDANDKFTKNDKQICRMILNKFKTLIVIINKAD 124 Query: 142 CVKPE 146 +K E Sbjct: 125 LIKDE 129 >gi|259503207|ref|ZP_05746109.1| ribosome-associated GTPase EngA [Lactobacillus antri DSM 16041] gi|259168864|gb|EEW53359.1| ribosome-associated GTPase EngA [Lactobacillus antri DSM 16041] Length = 437 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 12/168 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHGEWLGKNFNMIDTGGIELS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + + I AD++ LVVD ++ + D +++A+ RS++ ++L +NK Sbjct: 65 DQPLLTQIRQQAEIAIDEADVIVLVVD----VESGVTDADEQVARILYRSNKPVVLAVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D PER + + + + + + + VS+ G G D+L+ + P Sbjct: 121 VD--NPERRNDVYDFYS--LGLGEPYPVSSVHGVGLGDLLDAVIHHFP 164 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 12/127 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG-IVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+LVN +G IV++ TTR + V+ + +DT GI Sbjct: 178 SLIGRPNVGKSSLVNGILGENRVIVSNMAGTTRDAINTRFVAPDGQEFTMIDTAGIRKQG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILIL 137 Y + + + I +D+V +V+++ I ++ K IA + +I+ + Sbjct: 238 KIYENTERYALMRAMRAIDDSDVVLVVLNAEE----GIREIDKHIAGYAHEAGCGVIIAV 293 Query: 138 NKIDCVK 144 NK D ++ Sbjct: 294 NKWDTIE 300 >gi|225386360|ref|ZP_03756124.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme DSM 15981] gi|225047542|gb|EEG57788.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme DSM 15981] Length = 470 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N +G +IVT TTR + + + + +DT GI + +D Sbjct: 232 ILGKPNAGKSSLMNVLIGEDRAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDV 291 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS----RLILILNKID 141 K+ + + + AD++ VVD L N +++ I S + I++LNK D Sbjct: 292 VEKIGVDRAMKAAREADLLIYVVDGSTPLDENDREIMDFIRSNSGEGGKKAIVLLNKTD 350 >gi|148994026|ref|ZP_01823382.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP9-BS68] gi|168484900|ref|ZP_02709845.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1873-00] gi|168488574|ref|ZP_02712773.1| GTP-binding protein EngA [Streptococcus pneumoniae SP195] gi|307127923|ref|YP_003879954.1| GTP-binding protein EngA [Streptococcus pneumoniae 670-6B] gi|147927493|gb|EDK78521.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP9-BS68] gi|172041949|gb|EDT49995.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1873-00] gi|183572668|gb|EDT93196.1| GTP-binding protein EngA [Streptococcus pneumoniae SP195] gi|306484985|gb|ADM91854.1| GTP-binding protein EngA [Streptococcus pneumoniae 670-6B] gi|332072538|gb|EGI83021.1| GTP-binding protein engA [Streptococcus pneumoniae GA17570] gi|332072881|gb|EGI83362.1| GTP-binding protein engA [Streptococcus pneumoniae GA17545] Length = 436 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ VV + + +++ K +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ N + + + + +S+ G G DVL+ + LP Sbjct: 123 -------NPEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLP 164 Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N ++ ++N +L+G N GKS+L+N +G I + TTR + ++ + Sbjct: 162 NLPNEYEEENPDVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTD 221 Query: 70 SQ-IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 Q +DT G+ + Y K + + I +D+V +V+++ RE I Sbjct: 222 GQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGF 281 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K +I+++NK D ++ Sbjct: 282 AHEAGK---GMIIVVNKWDTLE 300 >gi|122702843|emb|CAL88611.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISALVDAILNALNL 168 >gi|296313895|ref|ZP_06863836.1| tRNA modification GTPase TrmE [Neisseria polysaccharea ATCC 43768] gi|296839424|gb|EFH23362.1| tRNA modification GTPase TrmE [Neisseria polysaccharea ATCC 43768] Length = 448 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 TR VR + + +DT G+ D ++ I S + AD+ ++VD Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVD 304 >gi|295706430|ref|YP_003599505.1| GTP-binding protein EngA [Bacillus megaterium DSM 319] gi|294804089|gb|ADF41155.1| GTP-binding protein EngA [Bacillus megaterium DSM 319] Length = 436 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + +DT GI Sbjct: 5 IIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSGEWLNVDFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + I AD++ +V+ + ++ K + K ++L +NK+D Sbjct: 65 DEPFLEQIKQQAEIAIDEADVIIFLVNGRDGITAADEEVAKILYKSKKPVVLAVNKVDNP 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L+ L + E F +S T G G D+L+ P Sbjct: 125 EMRELIYD---FYALGYGE-PFPISGTHGLGLGDLLDEAAKHFP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 4/132 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 +L+G N GKS+LVN +G IV+ TTR + ++++ + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGEDRVIVSDLAGTTRDAIDTKFTKEDQEYVVIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K + + I+ +D+V +V+++ + + + +++++NK D Sbjct: 239 VYESTEKYSVLRALKAIERSDVVLVVLNAEEGIIEQDKKIAGYAQEAGKAVVIVVNKWDT 298 Query: 143 V-KPERLLEQAE 153 V K E+ +++ E Sbjct: 299 VEKDEKTMKKFE 310 >gi|225011402|ref|ZP_03701840.1| small GTP-binding protein [Flavobacteria bacterium MS024-2A] gi|225003905|gb|EEG41877.1| small GTP-binding protein [Flavobacteria bacterium MS024-2A] Length = 434 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 7/168 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKST NR + + +IV TR G +DT G Sbjct: 2 SSIVAIVGRPNVGKSTFFNRMIQKREAIVDSISGVTRDRHYGKSDWNGRNFTLIDTGGYV 61 Query: 82 NAKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 D + K + + I+ AD++ +VD + + +++ ++ +RS + + L +NK Sbjct: 62 EGSDDIFQKEIDKQVNLAIEEADVIVFMVDVMDGV-TGMDEVIADLLRRSQKPIFLAINK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D +RL E + + E+ + +S+ G G ++L+ + LP Sbjct: 121 VD--NAQRLESTLEFYS--LGFEQFYCISSVNGGGSGELLDDIVKKLP 164 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINSLIGKDRYIVTDIAGTTRDSIDTQYNRFGFDFNLVDTAGIRRKAK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I++ D+ LVVD R + ++ + + +++++NK D Sbjct: 238 VKEDIEFYSVMRSVRAIEYCDVCLLVVDGTRGFDGQVQNIFWLAHRNNKGIVILVNKWDL 297 Query: 143 V 143 V Sbjct: 298 V 298 >gi|122701355|emb|CAL88067.1| GTPase [Helicobacter pylori] gi|122702169|emb|CAL88275.1| GTPase [Helicobacter pylori] gi|122702319|emb|CAL88350.1| GTPase [Helicobacter pylori] gi|122702421|emb|CAL88401.1| GTPase [Helicobacter pylori] gi|122702587|emb|CAL88483.1| GTPase [Helicobacter pylori] gi|292806660|gb|ADE42460.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|304319918|ref|YP_003853561.1| GTP-binding protein EngA [Parvularcula bermudensis HTCC2503] gi|303298821|gb|ADM08420.1| GTP-binding protein EngA [Parvularcula bermudensis HTCC2503] Length = 459 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 20/175 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV----RGIVSEKESQIVFLDTPGI 80 +A+VG NAGKSTLVN+ +G + + TR + R + +++ + DT G+ Sbjct: 189 LAIVGRPNAGKSTLVNQLLGEDRVLTGPEAGITRDTISAEWRYVADDRDWPVKLFDTAGL 248 Query: 81 ---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDL-LKEIAKRSSRL 133 +D KL + + I+ A++V L++D+ + + + I DL LKE L Sbjct: 249 RRRAKVQDKLEKLSVGDTLRAIRFAEVVALLIDATQPFEKQDLQIADLALKE----GRAL 304 Query: 134 ILILNKIDCV--KPERLLEQAEIANKLV---FIEKTFMVSATKGHGCDDVLNYLC 183 +++ NK D + K E E+A +L+ ++SA G G D + ++ Sbjct: 305 VIVANKWDLIDDKDEAARALREMAGRLLPQAPGAPVVLLSAKTGRGIDRFMPHVV 359 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 6/163 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR G K+++V + TR + + + +DT G+ A+ Sbjct: 5 LAIIGRPNVGKSTLFNRLAGRKLALVHDEPGVTRDRREIEATFGDLDLTLIDTAGLEEAQ 64 Query: 85 DSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + +R + I AD+ ++D+ + +L + + +I++ NK + Sbjct: 65 QGSLQARMRAGTEKAIGLADLSLFLIDARAGVTAQDEELAQMLRSAGRPVIVVANKTEGR 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E E + + +SA G G D+ + S L Sbjct: 125 GEEGAYEAYRLG-----LGDPVPISAEHGEGMADLYQAVISKL 162 >gi|330987014|gb|EGH85117.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ S++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|330961500|gb|EGH61760.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ N Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRNT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ +++ LI NK Sbjct: 278 EDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKS 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|319408190|emb|CBI81843.1| GTP-binding protein [Bartonella schoenbuchensis R1] Length = 469 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 +A+VG N GKSTL NR VG K+++V +K TR R + + + F +DT G+ + Sbjct: 5 IAIVGRPNVGKSTLFNRLVGQKLALVDNKPGVTRD--RRVHEARLQDLRFNVIDTAGLED 62 Query: 83 AKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 A D + M + + IK AD++ V+D+ + + + K ++LI+NK Sbjct: 63 ASDQTLEGRMFFQTKAAIKEADLILFVLDAKSGVTPSDCSFASLVRKSGKPIVLIVNK 120 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E + FV D S+ +A+ G N GKSTL+N +G + + TR + + Sbjct: 193 EERGFVYDESKPIRIAIAGRPNTGKSTLINSMLGQDRLLTGPEAGITRDSISVDWEWRGR 252 Query: 71 QIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEI 126 DT G+ ++ KL + + I+ +++V +V D+ + DL + ++ Sbjct: 253 CFKLFDTAGLRRKLKVQEKLEKLSVADTLRAIRFSEVVVIVFDA--TMPFEKQDLQIADL 310 Query: 127 AKRSSRL-ILILNKIDCVK 144 R R+ I+ NK D ++ Sbjct: 311 VIREGRVPIIAFNKWDLIE 329 >gi|315659998|ref|ZP_07912856.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590] gi|315494899|gb|EFU83236.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590] Length = 471 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 231 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 290 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++ + L L + I ++ +I+I+NK Sbjct: 291 IRDTEDIVEKIGVERSRKALSQADLILFVLNYNEPLTKEDRTLFEVI--KNEDVIVIVNK 348 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + + E E+ I+ + + K G D++ Sbjct: 349 TDLAQQLNIEEVQEMIGNKPLIQTSML----KQEGIDEL 383 >gi|294501083|ref|YP_003564783.1| GTP-binding protein EngA [Bacillus megaterium QM B1551] gi|294351020|gb|ADE71349.1| GTP-binding protein EngA [Bacillus megaterium QM B1551] Length = 436 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + +DT GI Sbjct: 5 IIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSGEWLNVDFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + I AD++ +V+ + ++ K + K ++L +NK+D Sbjct: 65 DEPFLEQIKQQAEIAIDEADVIIFLVNGRDGITAADEEVAKILYKSKKPVVLAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E L + E F +S T G G D+L+ P Sbjct: 123 NPE-MRELIYDFYALGYGE-PFPISGTHGLGLGDLLDEAAKHFP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 4/132 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 +L+G N GKS+LVN +G IV+ TTR + ++++ + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGEDRVIVSDLAGTTRDAIDTKFTKEDQEYVVIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K + + I+ +D+V +V+++ + + + +++++NK D Sbjct: 239 VYESTEKYSVLRALKAIERSDVVLVVLNAEEGIIEQDKKIAGYAQEAGKAVVIVVNKWDT 298 Query: 143 V-KPERLLEQAE 153 V K E+ +++ E Sbjct: 299 VEKDEKTMKKFE 310 >gi|302554600|ref|ZP_07306942.1| GTP-binding protein HflX [Streptomyces viridochromogenes DSM 40736] gi|302472218|gb|EFL35311.1| GTP-binding protein HflX [Streptomyces viridochromogenes DSM 40736] Length = 497 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 12/191 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + + VA+ G TNAGKS+L+NR GA V + T V Sbjct: 254 EIAEMKTGREIKRQERKRHKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 313 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 314 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGESDLILHVVDGSHPNPEEQLA 373 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++++ I+++NK D P L +L+ +EK + VSA G D Sbjct: 374 AVREVVRDVGATDVPEIVVINKADLADPLTL-------QRLLRVEKRSIAVSARTGRNID 426 Query: 177 DVLNYLCSTLP 187 +L + + LP Sbjct: 427 QLLALIDNELP 437 >gi|122702837|emb|CAL88608.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|122700623|emb|CAL87900.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----TPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|242255816|gb|ACS88892.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 19/173 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 NKID K ER + + K+F +S + G +++ + L L+ Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDLS 169 >gi|99905879|gb|ABF68634.1| YphC [Helicobacter pylori] gi|122702729|emb|CAL88554.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|18075595|emb|CAD11193.1| GTP-binding protein [Helicobacter pylori] gi|18075597|emb|CAD11194.1| GTP-binding protein [Helicobacter pylori] gi|18075599|emb|CAD11195.1| GTP-binding protein [Helicobacter pylori] gi|122700747|emb|CAL87962.1| GTPase [Helicobacter pylori] gi|122700749|emb|CAL87963.1| GTPase [Helicobacter pylori] gi|122700755|emb|CAL87966.1| GTPase [Helicobacter pylori] gi|122700761|emb|CAL87969.1| GTPase [Helicobacter pylori] gi|122700795|emb|CAL87986.1| GTPase [Helicobacter pylori] gi|122700801|emb|CAL87989.1| GTPase [Helicobacter pylori] gi|122700803|emb|CAL87990.1| GTPase [Helicobacter pylori] gi|122700817|emb|CAL87997.1| GTPase [Helicobacter pylori] gi|122700851|emb|CAL88014.1| GTPase [Helicobacter pylori] gi|122700877|emb|CAL88027.1| GTPase [Helicobacter pylori] gi|122700923|emb|CAL88050.1| GTPase [Helicobacter pylori] gi|122701535|emb|CAL88157.1| GTPase [Helicobacter pylori] gi|122701673|emb|CAL88226.1| GTPase [Helicobacter pylori] gi|122701681|emb|CAL88230.1| GTPase [Helicobacter pylori] gi|122701691|emb|CAL88235.1| GTPase [Helicobacter pylori] gi|122702245|emb|CAL88313.1| GTPase [Helicobacter pylori] gi|122702295|emb|CAL88338.1| GTPase [Helicobacter pylori] gi|122702317|emb|CAL88349.1| GTPase [Helicobacter pylori] gi|122702331|emb|CAL88356.1| GTPase [Helicobacter pylori] gi|122702363|emb|CAL88372.1| GTPase [Helicobacter pylori] gi|122702365|emb|CAL88373.1| GTPase [Helicobacter pylori] gi|122702381|emb|CAL88381.1| GTPase [Helicobacter pylori] gi|122702383|emb|CAL88382.1| GTPase [Helicobacter pylori] gi|122702431|emb|CAL88406.1| GTPase [Helicobacter pylori] gi|122702449|emb|CAL88415.1| GTPase [Helicobacter pylori] gi|122702477|emb|CAL88429.1| GTPase [Helicobacter pylori] gi|122702525|emb|CAL88452.1| GTPase [Helicobacter pylori] gi|122702825|emb|CAL88602.1| GTPase [Helicobacter pylori] gi|292806442|gb|ADE42351.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806484|gb|ADE42372.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806506|gb|ADE42383.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453523|emb|CBL87871.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|228470917|ref|ZP_04055762.1| tRNA modification GTPase TrmE [Porphyromonas uenonis 60-3] gi|228307314|gb|EEK16328.1| tRNA modification GTPase TrmE [Porphyromonas uenonis 60-3] Length = 470 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 A++GA N GKS+L+N + + +IV+ TTR V G ++ + + +DT G+ Sbjct: 219 TAIIGAPNVGKSSLLNALLQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTT 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVV----DSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D +L I S+ I A ++ V+ + EL+ + +LL + S LIL+LNK Sbjct: 279 DLVEQLGIERSYQQISSARLILWVIAPPLPTWDELETQLGELLP-LTSPDSTLILLLNKR 337 Query: 141 DCV 143 D + Sbjct: 338 DLL 340 >gi|219870952|ref|YP_002475327.1| GTP-binding protein EngA [Haemophilus parasuis SH0165] gi|254783156|sp|B8F4X7|DER_HAEPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219691156|gb|ACL32379.1| GTP-binding protein EngA [Haemophilus parasuis SH0165] Length = 504 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 218 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 277 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 278 KVHLAVEKFSVIKTLQAIQDANVVLLTIDARDGVSDQDLSLLGFILNAGKSLVIVVNKWD 337 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 338 GLSQDIKDNVKSELDRRLDFIDFARVHFISALHGSGVGNLFSSIQEAYQCAT 389 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 57/123 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRNALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S IK AD+V +VD+ L + + + +R+ +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIKEADVVLFLVDARAGLLPADVGIAQYLRQRNKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|194246522|ref|YP_002004161.1| GTP-binding protein EngA [Candidatus Phytoplasma mali] gi|193806879|emb|CAP18308.1| conserved hypothetical protein [Candidatus Phytoplasma mali] Length = 441 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 12/163 (7%) Query: 3 MGEITFFNEHKD-FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 + +I FF+ K+ F +D+ C L+G N GKSTL N + + +V+ TT V Sbjct: 155 LDKIIFFHHKKEYFSKDSVIKFC--LLGRPNVGKSTLTNMILSQERMVVSDIAGTTTDAV 212 Query: 62 RGIVSEKESQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL 115 + E +DT GI + +D Y L + S + +DI CLV+D+ R + Sbjct: 213 DTFFQKGEKIYQVIDTAGIKKRGKIYEKEDKYSVLR---ALSALGRSDIACLVLDADRGI 269 Query: 116 KVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKL 158 ++ I + + I+I+NK D +K E + NK+ Sbjct: 270 SEQDKNIAGLILEYNKACIIIVNKWDLIKTEDYDQTKYFINKI 312 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 8/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS++ NR + ++SIV K TR + +DT GI Sbjct: 5 VAIVGRPNVGKSSIFNRILKKRLSIVHDKPGITRDRIYAQADWLTKSFDIIDTGGIEIKN 64 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL--KEIAKRSSRLILILNKIDC 142 + K + I A+++ VVD + N D+ K + K +IL++NKID Sbjct: 65 TPFLKQIKYQVQLAIDEANLILFVVDGR--IFGNQGDIYISKILLKTKKPVILVINKID- 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + LL L F + +VSA G G D+L+ Sbjct: 122 --NKDLLSNTYDFYSLGF-KNIQIVSANHGIGIGDLLD 156 >gi|190891663|ref|YP_001978205.1| GTP-binding protein [Rhizobium etli CIAT 652] gi|190696942|gb|ACE91027.1| GTP-binding protein [Rhizobium etli CIAT 652] Length = 441 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 33/197 (16%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + ++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK-------EIAKRSSRLIL 135 ++ R + + AD++ V D S + + D+++ + A+ RLI Sbjct: 264 LPTHLVAAFRATLEEVLEADLILHVRDMSDPDNQAQSSDVMRILGDLGIDEAEAGKRLIE 323 Query: 136 ILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC--------- 183 + NKID ++ E ++++A A+ +V VSA G G D +++ + Sbjct: 324 VWNKIDRLESEVHDAMVQKAAGASNVV------AVSAVSGEGVDTLMDEISRRLSGVMTE 377 Query: 184 -------STLPLAPWVY 193 L L PW+Y Sbjct: 378 TTIRLPVDKLALLPWLY 394 >gi|124008576|ref|ZP_01693268.1| GTP-binding protein EngA [Microscilla marina ATCC 23134] gi|123985950|gb|EAY25807.1| GTP-binding protein EngA [Microscilla marina ATCC 23134] Length = 436 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 4/160 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKSTL NR + + SI+ ++ TR V G +DT G + Sbjct: 2 SNIVAIVGRPNVGKSTLFNRLIEQRKSIMDNQSGVTRDRVYGQAEWIGKFFTVIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++D + + I+ + +V VVD L D + + S +I++ NK Sbjct: 62 VGSEDVFEGAIREQVEIAIEESSVVLFVVDCITGLTDLDKDFANVLRRGSKPVIIVANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D ++ E + + +L F +SA G G D+L+ Sbjct: 122 DNIEKEYMASEFY---QLGLEGDIFPISAQSGSGSGDLLD 158 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG NAGKS+LVN G + SIVT TTR V + DT G+ Sbjct: 179 IAIVGRPNAGKSSLVNVLTGKERSIVTDIAGTTRDSVNTHYKAFGKNFILTDTAGLRRKS 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 KD+ + +++ +DI ++VD+ R ++ +++ K +++++NK D Sbjct: 239 RVKDNIEFYSTMRALRSLEASDICIVMVDATRGIEGQDVNIIGLADKNGKGIVIMVNKWD 298 Query: 142 CVKPE 146 ++ + Sbjct: 299 LIEKD 303 >gi|122702629|emb|CAL88504.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|145589468|ref|YP_001156065.1| small GTP-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189037153|sp|A4SYD7|DER_POLSQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145047874|gb|ABP34501.1| small GTP-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 454 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 10/177 (5%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 + + D +R +A+VG N GKSTL+N+ +G + I TTR + Sbjct: 169 DEDELANDPNRPMKIAVVGRPNVGKSTLINKLIGEERVIAFDMPGTTRDAIEVPFERNGK 228 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +DT G+ ++ K + + I ++V L++D+ +++ + I Sbjct: 229 PYILVDTAGLRRRGKVFEAIEKFSVVKTLQAIADCNVVILMLDAQQDISEQDAHIAGFIV 288 Query: 128 KRSSRLILILNK---IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + L++ +NK +D ER + EIA KL F++ +SA KG G D+ Sbjct: 289 EAGRALVVAVNKWDGLDAYVKER--ARLEIAQKLRFLDFANVHPISAKKGTGLKDLF 343 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 15/172 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 + +VG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VITIVGRPNVGKSTLFNRLTRSRDALVADFSGLTRDRHYGKGRIGERAFICVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AK M + + + +DIV +VD + + + K +IL +NK + Sbjct: 64 AKTGIVAEMAKQTKQAVAESDIVIFLVDGRLGMAPQDRVIADFLRKTGRPVILAVNKTEG 123 Query: 143 VKPERLLEQAEIANK---LVFIEKTFMVSATKGHGC----DDVLNYLCSTLP 187 + Q+ I + + + F +S+ G G DD L+ L P Sbjct: 124 M-------QSGIVTADFHELGLGEPFPISSAHGDGVKGLIDDALDSLGIAEP 168 >gi|21224141|ref|NP_629920.1| hypothetical protein SCO5796 [Streptomyces coelicolor A3(2)] gi|2995304|emb|CAA18333.1| conserved hypothetical protein SC4H2.17 [Streptomyces coelicolor A3(2)] Length = 497 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 12/191 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + + VA+ G TNAGKS+L+NR GA V + T V Sbjct: 254 EIAEMKTGREIKRQERKRHKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 313 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ VVD SH E Sbjct: 314 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHVVDGSHPVPEEQLA 373 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++++ I+++NK D P + +L+ IEK VSA G D Sbjct: 374 AVREVIRDVGATDVPEIVVINKADMADP-------LVLQRLLRIEKRAIAVSARTGQNID 426 Query: 177 DVLNYLCSTLP 187 +L + + LP Sbjct: 427 QLLALIDNELP 437 >gi|332159398|ref|YP_004424677.1| GTP-binding protein hflX [Pyrococcus sp. NA2] gi|331034861|gb|AEC52673.1| GTP-binding protein hflX [Pyrococcus sp. NA2] Length = 425 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 13/176 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL G TNAGKSTL+N G +V + T + R K ++ DT G + Sbjct: 189 LVALAGYTNAGKSTLLNALTGEEVEAKSQMFTTLDTTTRRF-KVKGKMLLVTDTVGFIDG 247 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIH---DLLKEIAKRSSRLILIL 137 + + I +DI+ LV+D S +E++ D+L+E+ +I+ L Sbjct: 248 LPPFIVEAFHSTLEEIVKSDIIILVLDGSESWKEIRRKFFASLDVLRELKALDRPMIIAL 307 Query: 138 NKIDCVKPERLLEQA----EIANKLVFIEKTFMVSATKGHGCD--DVLNYLCSTLP 187 NK+D + E E+ E+AN + +SA GH + D++ S LP Sbjct: 308 NKVDLISEEDAREKELLLRELANGRADVIGVAKISAKLGHLKELYDLIEKALSKLP 363 >gi|254804213|ref|YP_003082434.1| putative tRNA modification GTPase [Neisseria meningitidis alpha14] gi|254667755|emb|CBA03677.1| putative tRNA modification GTPase [Neisseria meningitidis alpha14] Length = 448 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 TR VR + + +DT G+ D ++ I S + AD+ ++VD Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVD 304 >gi|242278504|ref|YP_002990633.1| GTP-binding protein EngA [Desulfovibrio salexigens DSM 2638] gi|259645870|sp|C6C0G0|DER_DESAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|242121398|gb|ACS79094.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638] Length = 450 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 4/129 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS++VN G + IV+ TTR V F+DT G+ Sbjct: 185 IAMLGRPNAGKSSMVNALTGEERVIVSDVAGTTRDSVDVTFESGGKIYTFVDTAGVRRRT 244 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N D+ + + + + ADI +VVD+ + LL+ + + + I+ +NKID Sbjct: 245 NITDTIERFSVVRALRSSTKADITVMVVDALAGITKQDKRLLEYLLREAVPFIIAVNKID 304 Query: 142 CV-KPERLL 149 V K ER L Sbjct: 305 LVSKSERNL 313 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 12/126 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-- 81 +AL+G N GKSTL NR + K +I TR + + +DT G+ Sbjct: 4 TIALIGRPNVGKSTLFNRLLRKKRAITHDMPGITRDRIYAEGNYNGVHYALIDTGGLVME 63 Query: 82 --NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSRLILI 136 N + + + + I+ A + LVVD + I L +++A ++S++ IL+ Sbjct: 64 SDNNSEEFQGDIFEQAREAIEEAQALILVVDG----RTGITQLDEQVAAYIRQSNKPILL 119 Query: 137 L-NKID 141 L NK+D Sbjct: 120 LVNKVD 125 >gi|254459937|ref|ZP_05073353.1| GTP-binding proten HflX [Rhodobacterales bacterium HTCC2083] gi|206676526|gb|EDZ41013.1| GTP-binding proten HflX [Rhodobacteraceae bacterium HTCC2083] Length = 423 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 8/159 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + Q++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRLTGAEVFAKDMLFATLDPTMRAVELPDGPQVILSDTVGFISD 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIA-KRSSRLILILN 138 + R + + AD++ V D SH E ++ +L + ++ I + N Sbjct: 264 LPTELVASFRATLEEVLAADLIVHVRDISHEGTEEQATDVRAILTSLGVGEGAKQIEVWN 323 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 KID ++P+ ++ + + + VS+ G+G D Sbjct: 324 KIDLLEPD---DKDAVLARAARHDDVIAVSSISGYGMQD 359 >gi|122702637|emb|CAL88508.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNVLDL 168 >gi|313884154|ref|ZP_07817920.1| ribosome biogenesis GTPase Der [Eremococcus coleocola ACS-139-V-Col8] gi|312620601|gb|EFR32024.1| ribosome biogenesis GTPase Der [Eremococcus coleocola ACS-139-V-Col8] Length = 438 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR VG +VSIV TR V + +DT GI Sbjct: 6 VVALVGRPNVGKSTIFNRLVGDRVSIVEDFPGVTRDRVYATGKWLGNDYRLIDTGGIELD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + + I AD++ ++ + L + + K +IL +NK D Sbjct: 66 DQPLMKQIRYQAEIAIDEADVIVMLANGQEGLTREDEVIASMLLKTDKPIILAVNKTD-- 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE+ ++ + + + + VS G G D+L+ + ++ P Sbjct: 124 NPEQRMDIFDFY--ALGLGEPHPVSGAHGTGLGDLLDQIVASFP 165 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 12/127 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG-IVSEKESQIVFLDTPGIFNAK 84 + +G N GKS+LVN + + IV++ TTR V +SE ++ +DT GI Sbjct: 180 SFIGRPNVGKSSLVNAVLKEERVIVSNIEGTTREAVDSKFISETGKEMTVIDTAGIRKKG 239 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 Y K + S + I +D+VC+V+D+ + I D K +A + +I+++ Sbjct: 240 KVYENTEKYSVMRSLAAIDRSDVVCIVLDA----ETGIRDQDKHVAGYAYEAGKGIIIVV 295 Query: 138 NKIDCVK 144 NK D +K Sbjct: 296 NKWDALK 302 >gi|167854675|ref|ZP_02477455.1| GTP-binding protein EngA [Haemophilus parasuis 29755] gi|167854212|gb|EDS25446.1| GTP-binding protein EngA [Haemophilus parasuis 29755] Length = 504 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 218 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 277 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 278 KVHLAVEKFSVIKTLQAIQDANVVLLTIDARDGVSDQDLSLLGFILNAGKSLVIVVNKWD 337 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 338 GLSQDIKDNVKSELDRRLDFIDFARVHFISALHGSGVGNLFSSIQEAYQCAT 389 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 57/123 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRNALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S IK AD+V +VD+ L + + + +R+ +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIKEADVVLFLVDARAGLLPADVGIAQYLRQRNKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|122702323|emb|CAL88352.1| GTPase [Helicobacter pylori] gi|122702361|emb|CAL88371.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|122701481|emb|CAL88130.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122700787|emb|CAL87982.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSVLDL 168 >gi|84626025|ref|YP_453397.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123520413|sp|Q2NX54|MNME_XANOM RecName: Full=tRNA modification GTPase mnmE gi|84369965|dbj|BAE71123.1| tRNA modification GTPase trmE [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 446 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 18/172 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G++ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + +R + + ++ AD+ +V+D+ + + I D + + R + I NK D + Sbjct: 281 IEREGMRRARAELERADLALVVLDARDPQAARAAIGDAIDAV----PRQLWIHNKCDLLS 336 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 L+ IA VSA G G + L+ L L V D Sbjct: 337 DAAPLDVNAIA-----------VSAVTGQGLEQ-LHIRLRELALGDGVEGVD 376 >gi|71662850|ref|XP_818425.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener] gi|70883677|gb|EAN96574.1| small GTP-binding protein, putative [Trypanosoma cruzi] Length = 571 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 12/142 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +ALVG TN+GKS+L+NR VG + S + +TR V K ++ +DT G+ Sbjct: 305 IALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELSCIYKGRKVKLIDTAGLTRHR 364 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 F A + + LS + I++A +V +V D+ E N +D+ L +A +L N Sbjct: 365 FRADRDFIGRIHDLSVNEIRYAHVVIVVFDAT-EGHPNKYDMAVLHSVAAEGRPFLLCAN 423 Query: 139 KIDCVKPERLLEQAEIANKLVF 160 K D V L+Q+ A + F Sbjct: 424 KWDAV-----LDQSATAEAIDF 440 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 14/135 (10%) Query: 25 VALVGATNAGKSTLVNRF-----VGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 VA+VG N+GKS+L N + + +IV TR V G + +DTPG Sbjct: 105 VAIVGRMNSGKSSLFNLLSEDPTMPNRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTPG 164 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + N K ++ ++ T++ AD V +L DL+ + + +++NK Sbjct: 165 MVNGK------LVEEAFRTVETADAAIFVTSVDEDLHSAEFDLIHYLQLKCMPTFVLVNK 218 Query: 140 IDCV---KPERLLEQ 151 +D V + +R+LE+ Sbjct: 219 MDLVPLDEEDRVLER 233 >gi|329121290|ref|ZP_08249917.1| ribosome-associated GTPase EngA [Dialister micraerophilus DSM 19965] gi|327470224|gb|EGF15687.1| ribosome-associated GTPase EngA [Dialister micraerophilus DSM 19965] Length = 443 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK- 84 A+VG N GKSTLVN +G + S+V ++ TTR + + + K + V +DT G+ Sbjct: 180 AIVGRPNVGKSTLVNSLLGYERSLVADEMGTTRDAIDSLWTHKGKKFVLVDTAGMRKKNK 239 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + K + S I D+ V+D+ L ++ I + LIL++NK D Sbjct: 240 IDEPLEKYSVIRSIRAIDDCDVAVFVLDAKDMLTEQDKKIIGYIHEAGKGLILMVNKWDI 299 Query: 143 VKPE 146 V+ + Sbjct: 300 VEKD 303 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 12/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKST++N +VSIV TR + + + +DT GI F Sbjct: 6 VAIVGRPNVGKSTIINGLAQKRVSIVEDLPGVTRDRIYCDAQWLDREFTLIDTGGIEFRE 65 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNK 139 + IR+ I+ AD++ V D L V I ++L++ K +++ +NK Sbjct: 66 EADQISDGIRMQAQLAIEEADVILFVTDVRVGLLDDDVTIAEILRKTGK---PVVVAVNK 122 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D E ++ E + + +SA+ G D+L+ + P Sbjct: 123 VDTEAQE--MDVYEFY--ALGLGDPIGISASNRVGFGDLLDKISEGFP 166 >gi|325289812|ref|YP_004265993.1| GTP-binding protein engA [Syntrophobotulus glycolicus DSM 8271] gi|324965213|gb|ADY55992.1| GTP-binding protein engA [Syntrophobotulus glycolicus DSM 8271] Length = 443 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 5/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR VG ++IV + TR + +DT GI F Sbjct: 5 VVAIVGRPNVGKSTLFNRVVGRMIAIVENTPGVTRDRLYFEAQWLNRNFTLIDTGGIEFK 64 Query: 83 AKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + LM + + ++ AD+V V+D + V + K + ++L++NK++ Sbjct: 65 DQSTPLSSLMKQQAEIAVEEADVVVFVLDGKTKATVEDEMVAKFLRSSGKPVVLVVNKVE 124 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K +E E +L F E VSA G D+L+ + LP Sbjct: 125 NFKNYE-VESYEYL-ELGFGE-PIPVSAAHGMNIGDMLDKVVENLP 167 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 32/203 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+LVN+ VG + IV+ TTR + ++ V +DT GI K Sbjct: 181 IAVIGRPNVGKSSLVNKMVGEERVIVSDIAGTTRDAIDTPFRFEDRDYVLIDTAGIRRRK 240 Query: 85 D----SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 + + +IR S+ I AD+V +++D+ + D K IA + +IL+ Sbjct: 241 KIAELTENYSVIR-SFRAIDRADVVLMMLDAVE----GVTDQDKRIAGYAHEAGKAIILV 295 Query: 137 LNKIDCV-KPERLLEQAE--IANKLVFI--EKTFMVSATKG---HGCDDVLNY------- 181 +NK D + K ++ + + E I +L F+ T +SA G H +++++ Sbjct: 296 INKWDLIEKDDKTINRFERDIREELAFMAYAPTQFISAKTGQRVHKIIELVDFVAEQNCH 355 Query: 182 --LCSTL--PLAPWVYSADQISD 200 L STL L W+Y SD Sbjct: 356 RILTSTLNNELREWLYLNPPPSD 378 >gi|295098886|emb|CBK87975.1| ribosome-associated GTPase EngA [Eubacterium cylindroides T2-87] Length = 329 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 7/172 (4%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA+VG N GKST+ NR +G + SIV TR + G V +DT GI Sbjct: 4 GTVAIVGRPNVGKSTIFNRLIGERKSIVDDTPGVTRDRIYGTVEWLTQSFHIIDTGGIQI 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + I+ AD++ + + + + + +++ K + ++L +NK D Sbjct: 64 EDQPFSEEINMQVDIAIEEADVIIFITSAKEGVMTDDMAIARKLQKSNKPVVLAVNKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP---LAPW 191 + L+ A + + +S G G D+L+ + +P L P+ Sbjct: 123 ---NQELQMAVYEFYSLGLGDPMTISGAHGIGLGDLLDKVIELMPKKELKPY 171 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 12/139 (8%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S CV +G N GKS+LVN + IV++ TTR + + + + +DT GI Sbjct: 176 SFCV--IGRPNVGKSSLVNAILKEDRVIVSNIEGTTRDAIDTPFKVDDKEYMIIDTAGIR 233 Query: 82 NAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLIL 135 Y K I + + I+ +++V V+D RE ++ L E K +I+ Sbjct: 234 KRGKIYENIEKYSILRAMNAIERSNVVLFVIDGELGIREQDKHVAGLAHEAGK---GVII 290 Query: 136 ILNKIDCV-KPERLLEQAE 153 + NK D V K E+ + E Sbjct: 291 VYNKWDTVDKDEKTMNAIE 309 >gi|122702519|emb|CAL88449.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|33152292|ref|NP_873645.1| GTP-binding protein EngA [Haemophilus ducreyi 35000HP] gi|41017016|sp|Q7VM29|DER_HAEDU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33148515|gb|AAP96034.1| conserved putative GTP-binding protein [Haemophilus ducreyi 35000HP] Length = 510 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + +V TTR + + + +DT G+ Sbjct: 222 IAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYTIIDTAGVRKRG 281 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +D+ + LL I L++++NK D Sbjct: 282 KINLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 341 Query: 142 CVKPERLLEQ--AEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + EQ +E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 342 GLSYD-IKEQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 393 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 16/180 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGIEEKMAEQSLLAIEEADVVLFLVDARAGLLPADIGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPER------LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + L E+A ++A +G G ++ + S L A AD+ Sbjct: 124 DADSHCGEFYQLGLGEVAK----------IAAAQGRGVTQLIEQVLSPLATALNSEQADE 173 >gi|315022654|gb|EFT35679.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Riemerella anatipestifer RA-YM] Length = 490 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKSTL+N + + +IV+ TTR + ++ F+DT GI + Sbjct: 248 VAIIGKPNAGKSTLLNALLKEERAIVSDIAGTTRDTIEEVLHIGGHAFRFIDTAGIRDTA 307 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + + + I ADI+ + D I + + + + ++IL+ NKID Sbjct: 308 DRVESIGVEKAKEKINTADILLYLFDIKDSTPNEIINFITSLERPDLKVILLQNKIDS 365 >gi|303256256|ref|ZP_07342272.1| GTP-binding protein [Burkholderiales bacterium 1_1_47] gi|331001317|ref|ZP_08324943.1| hydrogenase maturation GTPase HydF [Parasutterella excrementihominis YIT 11859] gi|302860985|gb|EFL84060.1| GTP-binding protein [Burkholderiales bacterium 1_1_47] gi|329569044|gb|EGG50840.1| hydrogenase maturation GTPase HydF [Parasutterella excrementihominis YIT 11859] Length = 404 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 15/171 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS-IVRGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+++N +++V+ TT + + + ++ +DT GI + Sbjct: 15 IGIFGRRNAGKSSVINALTKQNIALVSDVAGTTTDPVFKAMEILPLGPVMIIDTAGIDDI 74 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D KL I + + D+ +V+D+ ++ L+ E K + IL NKI+ V Sbjct: 75 GD-LGKLRIGKTKEVMTKTDVAVIVIDAANDVSDFERSLVSEFKKLGTTYILAANKIETV 133 Query: 144 KPERLLEQAEIANKLVFIEKTFM-----VSATKGHGCDDVLNYLCSTLPLA 189 A+ A ++ F++K F +SA K G D++ + + T P A Sbjct: 134 --------ADPAERIAFLDKAFGEKVVPISALKKKGIDELRSLIVKTAPEA 176 >gi|302380979|ref|ZP_07269440.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3] gi|303234699|ref|ZP_07321327.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4] gi|302311200|gb|EFK93220.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3] gi|302494182|gb|EFL53960.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4] Length = 452 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N + +IVT TTR ++ + + DT G Sbjct: 215 RDGINTTIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAG 274 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S S I +D++ + DS RE +L I R + I++LNK Sbjct: 275 IRDTEDIVEKIGVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLI--RDKKSIVLLNK 332 Query: 140 ID 141 ID Sbjct: 333 ID 334 >gi|240173132|ref|ZP_04751790.1| GTP-binding protein EngA [Mycobacterium kansasii ATCC 12478] Length = 466 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 14/190 (7%) Query: 7 TFFNEHKDFVQDNSR---------SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT 57 T+F+E D+ D+S + VA+VG N GKSTLVNR +G + ++V T Sbjct: 6 TWFDE-SDWELDDSDLAALSESAPAPVVAIVGRPNVGKSTLVNRILGRREAVVQDVPGVT 64 Query: 58 RSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV 117 R V + V DT G +L+ + ++ AD V LVVD+ Sbjct: 65 RDRVSYDALWSGRRFVVQDTGGWEPDAKGLQQLVAEQASVAMRTADAVILVVDAGVGATT 124 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 + + + + L NK+D K E + A + + + + + VSA G G D Sbjct: 125 ADEAAARILLRSGKPVFLAANKVDNEKGE--ADAAALWS--LGLGEPHAVSAMHGRGVAD 180 Query: 178 VLNYLCSTLP 187 +L+ + + LP Sbjct: 181 LLDQVLAALP 190 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 10/174 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ F+DT G+ Sbjct: 205 VALVGKPNVGKSSLLNKLAGDQRSVVHEVAGTTVDPVDSLIEMGGKVWRFVDTAGLRRKV 264 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + + I A++ ++VD+ + L +L + + L+L NK D Sbjct: 265 GQASGHEFYASVRTHAAIDSAEVAIVLVDASQPLTEQDQRVLSMVIEAGRALVLAFNKWD 324 Query: 142 CVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 V +R LLE+ EI +LV + + +SA G ++ L S LA W Sbjct: 325 LVDEDRRELLER-EIDRELVQVRWAQRVNISAKTGRAVQKLVPALESA--LASW 375 >gi|213692049|ref|YP_002322635.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523510|gb|ACJ52257.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458161|dbj|BAJ68782.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 709 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAIVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 333 DVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPIVLAVNKIDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L AE + + + + +SA G G D+L+ L A Sbjct: 393 QASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALDKLKQA 435 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IV+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + + ++ ++L+ N Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDAM 571 >gi|169825321|ref|YP_001692932.1| tRNA modification GTPase [Finegoldia magna ATCC 29328] gi|205829141|sp|B0S3V2|MNME_FINM2 RecName: Full=tRNA modification GTPase mnmE gi|167832126|dbj|BAG09042.1| tRNA modification GTPase [Finegoldia magna ATCC 29328] Length = 452 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N + +IVT TTR ++ + + DT G Sbjct: 215 RDGINTTIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAG 274 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S S I +D++ + DS RE +L I R + I++LNK Sbjct: 275 IRDTEDIVEKIGVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLI--RDKKSIVLLNK 332 Query: 140 ID 141 ID Sbjct: 333 ID 334 >gi|122701363|emb|CAL88071.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDLKLFREVFKTNPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + + K+F +S + G +++ + L L Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|122701401|emb|CAL88090.1| GTPase [Helicobacter pylori] gi|122701443|emb|CAL88111.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|122700861|emb|CAL88019.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|325270021|ref|ZP_08136629.1| thiophene and furan oxidation protein ThdF [Prevotella multiformis DSM 16608] gi|324987606|gb|EGC19581.1| thiophene and furan oxidation protein ThdF [Prevotella multiformis DSM 16608] Length = 483 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G TN GKSTL+N + + +IV++ TTR ++ F+DT G+ + Sbjct: 253 VAIIGKTNVGKSTLLNCLLHEEKAIVSNIHGTTRDVIEDTTEINGVTFRFIDTAGLRHTD 312 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D +L IR ++ +K A +V V D R+ + ++ +A+ +LI + NK+D Sbjct: 313 DQIERLGIRRAYEKMKEAAVVLWVND--RQPTIEECREMRHLAE-GKKLITVFNKMD 366 >gi|317453515|emb|CBL87867.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|292806574|gb|ADE42417.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALDL 168 >gi|225017068|ref|ZP_03706260.1| hypothetical protein CLOSTMETH_00993 [Clostridium methylpentosum DSM 5476] gi|224950235|gb|EEG31444.1| hypothetical protein CLOSTMETH_00993 [Clostridium methylpentosum DSM 5476] Length = 439 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 16/174 (9%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +DN S VA+VG TNAGKSTL+N A V T R + ++ +D Sbjct: 217 KDNVTS--VAIVGYTNAGKSTLLNALTDAGVLAENKLFATLDPTARALELPDGKSVLLID 274 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADI---VCLVVDSHRELKVN-IHDLLKEIAKRSSR 132 T G+ + + + + +AD+ VC V + E +V +H LL E+ S Sbjct: 275 TVGLISRLPHHLVEAFKSTLEEAANADLILHVCDVSNDEVESQVKVVHQLLGELGCGSIP 334 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ +LNK D + + L + + + M+SA G G D++L+ + S+L Sbjct: 335 VLTVLNKCDKIPFQPYLSEPD----------SVMISAKTGFGFDNLLHKIASSL 378 >gi|254386099|ref|ZP_05001413.1| ATP/GTP-binding protein [Streptomyces sp. Mg1] gi|194344958|gb|EDX25924.1| ATP/GTP-binding protein [Streptomyces sp. Mg1] Length = 510 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 12/191 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + ++ VA+ G TNAGKS+L+NR GA V + T V Sbjct: 268 EIAEMKTGREIKRQERRRNKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 327 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + +D++ +VD SH E Sbjct: 328 RRAETPSGRIYTLADTVGFVRHLPHHLVEAFRSTMEEVGDSDLILHIVDGSHPAPEEQLA 387 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++E+ + I+++NK D P + +L+ IE+ + VSA G G Sbjct: 388 AVREVIREVGAVNVPEIVVINKADAADP-------LVLQRLLRIERHSIAVSARTGMGIA 440 Query: 177 DVLNYLCSTLP 187 +L + + LP Sbjct: 441 KLLELIDTELP 451 >gi|171742925|ref|ZP_02918732.1| hypothetical protein BIFDEN_02042 [Bifidobacterium dentium ATCC 27678] gi|283456054|ref|YP_003360618.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium dentium Bd1] gi|171278539|gb|EDT46200.1| hypothetical protein BIFDEN_02042 [Bifidobacterium dentium ATCC 27678] gi|283102688|gb|ADB09794.1| Bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium dentium Bd1] Length = 709 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + ++ AD V LVVD L ++K + + L +NK+D Sbjct: 333 DVEGIESAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRASGKPVTLAVNKVDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + E L AE + + + + +SA G G ++L+ +L A Sbjct: 393 RESEYL--TAEFWK--MGMGEPYGISAMHGRGIGELLDVALESLKKA 435 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + S+V TTR V +V+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAHEERSVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ D+ + + ++ + ++L+ N Sbjct: 507 RRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDLM 571 >gi|94311038|ref|YP_584248.1| small GTP-binding protein domain-containing protein [Cupriavidus metallidurans CH34] gi|93354890|gb|ABF08979.1| GTP-binding protein (putative GTPase) [Cupriavidus metallidurans CH34] Length = 411 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 13/181 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL N A+ T + R + + +V DT G Sbjct: 203 SISLVGYTNAGKSTLFNALTKARAYAADQLFATLDTTSRRLFLDGFGNVVLSDTVGFIRD 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ ++ +L EI I+++N Sbjct: 263 LPTQLVAAFRATLDETVHADLLLHVVDASSPVRHEQIE-QVNRVLAEIDASDIPQIVVMN 321 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC------STLPLAPWV 192 KID PE L + + VSA G G D + + S+ P AP Sbjct: 322 KIDAA-PELLELGPRVERDEDGVPTKVFVSARDGLGLDGLREAIVAMAQWLSSRPEAPAP 380 Query: 193 Y 193 Y Sbjct: 381 Y 381 >gi|330937305|gb|EGH41313.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. pisi str. 1704B] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ S++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|319952374|ref|YP_004163641.1| gtp-binding protein enga [Cellulophaga algicola DSM 14237] gi|319421034|gb|ADV48143.1| GTP-binding protein engA [Cellulophaga algicola DSM 14237] Length = 435 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 5/167 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKST NR + + +IV TR G + +DT G Sbjct: 2 SAIVAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKSDWNGREFSVIDTGGYV 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + I I AD++ +VD + D+ + + ++L +NK+ Sbjct: 62 KGSDDVFEAEIDKQVELAIDEADVIIFMVDVETGITGMDEDVANLLRRVKKPVLLAVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D K R + E + + + F +++T G G D+L+ L LP Sbjct: 122 DNNK--RAEDAVEFYS--LGLGDYFTIASTNGSGTGDLLDALVEVLP 164 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG NAGKS+ +N +G + IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINALIGEERYIVTDVAGTTRDSIDTKYNRFGFEFNLVDTAGIRRKSK 237 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 + L + S I+H+D+ +++D+ R + ++ +A+R+++ I+IL NK D Sbjct: 238 VHEDLEFYSVMRSVRAIEHSDVCIIILDATRGFDGQVQNIF-WLAQRNNKGIVILVNKWD 296 Query: 142 CVK 144 V+ Sbjct: 297 LVE 299 >gi|283458469|ref|YP_003363095.1| GTPase [Rothia mucilaginosa DY-18] gi|283134510|dbj|BAI65275.1| GTPase [Rothia mucilaginosa DY-18] Length = 571 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 16/193 (8%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ + E K + +R VA+ G TNAGKS+L+NR A V + T V Sbjct: 296 EIAAMAPARETKRLNRRRNRVPSVAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTV 355 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIH 120 R + DT G + + R + + AD++ VVD SH + + I Sbjct: 356 RKAQTPDGIGYTLSDTVGFVRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQIR 415 Query: 121 DLLKEIAKRSSR---LILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + + IA+ +R I++LNK D P ER+ ++ + +VSA G G Sbjct: 416 AVREVIAEVDARHIPEIIVLNKADAADPFVLERMRQRE---------PEHVIVSARTGEG 466 Query: 175 CDDVLNYLCSTLP 187 +++ + T+P Sbjct: 467 IEELKQKIADTIP 479 >gi|256383817|gb|ACU78387.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. capri str. GM12] gi|256384647|gb|ACU79216.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455372|gb|ADH21607.1| ribosome-associated GTPase EngA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 435 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 6/164 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+L NR + K SIV +K TR + + + +DT GI + Sbjct: 5 VVAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLTREFILIDTGGI-SL 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D I+L I+ AD++ VVD L + + K + K +IL +NK D Sbjct: 64 SDQLFSNEIKLQTQIAIEQADVIIFVVDFLNNLDNDDKMIAKILHKSKKPVILAVNKYD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ ++ + + +S+T G G D+L+ + S + Sbjct: 123 ---KKTIDDHNYQFMSLGFSDLYFISSTHGIGVGDLLDKVISYI 163 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 5/142 (3%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 I++ +++++ ++D+S +A++G N GKS+LVN V IV+ TT V Sbjct: 160 ISYISKNEEIIKDDSTK--IAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISF 217 Query: 66 SEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 S + + +DT GI + K S S I +ADIV L++D+ + + ++ Sbjct: 218 SYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISNADIVLLMIDATKPITDQDTNI 277 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 I +I+++NK D +K Sbjct: 278 GGLIYDEKKPVIIVVNKWDLIK 299 >gi|190576473|ref|YP_001974318.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia K279a] gi|190014395|emb|CAQ48043.1| putative tRNA modification GTPase [Stenotrophomonas maltophilia K279a] Length = 449 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 48/85 (56%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G++ +IVT TTR +R + ++ +DT G+ + D+ Sbjct: 223 LIGPPNAGKSSLLNALAGSERAIVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDA 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDS 111 + +R + I+ D+ +V+D+ Sbjct: 283 IEREGMRRARVEIERTDLALIVLDA 307 >gi|122701473|emb|CAL88126.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLSALNL 168 >gi|122700811|emb|CAL87994.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|108563245|ref|YP_627561.1| GTP-binding protein EngA [Helicobacter pylori HPAG1] gi|122980493|sp|Q1CT35|DER_HELPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|107837018|gb|ABF84887.1| GTP-binding protein-like protein [Helicobacter pylori HPAG1] Length = 461 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + E+A A + K+F +S + G +++ + S L L Sbjct: 128 DKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAVLSALNL 169 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 202 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRS 261 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 262 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 320 >gi|18075577|emb|CAD11184.1| GTP-binding protein [Helicobacter pylori] gi|122702815|emb|CAL88597.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLDALNL 168 >gi|332705667|ref|ZP_08425743.1| tRNA modification GTPase trmE [Lyngbya majuscula 3L] gi|332355459|gb|EGJ34923.1| tRNA modification GTPase trmE [Lyngbya majuscula 3L] Length = 459 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 38/222 (17%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------ 73 R+G V ++G N GKS+L+N + +IVT TTR +V ESQ+V Sbjct: 219 RTGLKVVILGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDVV-------ESQLVVGGIPV 271 Query: 74 -FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 LDT GI D K+ + S S AD+V LV+++ ++ +++ +R Sbjct: 272 QVLDTAGIRETADQVEKIGVERSRSAAMAADLVLLVIEATTGWSAGDQEIYQQVQERP-- 329 Query: 133 LILILNKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +IL++NK D K E L IE+ +A G D + + + Sbjct: 330 VILVINKTDLASDKAESTLSYPNT------IERVVKTAAAYNQGIDALEKAILDAVNRGN 383 Query: 191 WVYSADQISDLPMF---HFTAEITREKLFLH-----LHKEIP 224 Q +DL + A +TR K+ L + KE+P Sbjct: 384 L-----QAADLDLAINQRQAAALTRAKMSLQQVQETIAKELP 420 >gi|313111481|ref|ZP_07797282.1| putative GTPase for tRNA modification and thiophene and furan oxidation [Pseudomonas aeruginosa 39016] gi|310883784|gb|EFQ42378.1| putative GTPase for tRNA modification and thiophene and furan oxidation [Pseudomonas aeruginosa 39016] Length = 455 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D K+ + + I AD V LVVD+ + L E + ++ LI NK Sbjct: 278 EDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|292806692|gb|ADE42476.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLNAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALDL 168 >gi|260424846|ref|ZP_05733464.2| ribosome-associated GTPase EngA [Dialister invisus DSM 15470] gi|260403366|gb|EEW96913.1| ribosome-associated GTPase EngA [Dialister invisus DSM 15470] Length = 454 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 38/193 (19%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA-- 83 A+VG N GKSTL+N +G + S+V ++ TTR V + K + +DT G+ Sbjct: 192 AIVGRPNVGKSTLINSLLGYERSLVADEMGTTRDAVDSVWKYKGKTFILVDTAGMRKKGK 251 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + K + S I + D+ V+D++ L ++ I + LIL++NK D Sbjct: 252 IDEPLEKYSVIRSIRAIDNCDVAIFVLDANDMLTEQDKKIIGYIHEAGKGLILMVNKWDM 311 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 + E N +V +E+ + LP AP++ P Sbjct: 312 IPKE--------TNTMVELERQ-----------------VRDGLPFAPYI---------P 337 Query: 203 MFHFTAEITREKL 215 M F + +T++++ Sbjct: 338 ML-FGSALTKQRI 349 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 6/174 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V+D VA+VG N GKST++N +VSIV TR + V + + + Sbjct: 9 VEDKMSKPLVAIVGRPNVGKSTIINGLAQKRVSIVEDIPGVTRDRIYCDVRWLDREFTMI 68 Query: 76 DTPGI--FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 DT GI + D + + + ++ AD++ VVD+ ++ + + + + + Sbjct: 69 DTGGIEFRDEADQISDGIRQQAQLAMEEADVILFVVDARVGVQEDDQTIAGMLRRTGKPV 128 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +L +NK+D + ++ E + + I VSA G D+L+ + P Sbjct: 129 VLCVNKVDS--ENQKMDTYEFYS--LGIGDPMPVSAVNHLGFGDLLDKISEGFP 178 >gi|242255890|gb|ACS88929.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNVLDL 168 >gi|121635645|ref|YP_975890.1| tRNA modification GTPase TrmE [Neisseria meningitidis FAM18] gi|205415783|sp|A1KW66|MNME_NEIMF RecName: Full=tRNA modification GTPase mnmE gi|120867351|emb|CAM11122.1| probable thiophene and furan oxidation protein [Neisseria meningitidis FAM18] gi|325131396|gb|EGC54105.1| tRNA modification GTPase TrmE [Neisseria meningitidis M6190] gi|325135580|gb|EGC58198.1| tRNA modification GTPase TrmE [Neisseria meningitidis M0579] gi|325137477|gb|EGC60063.1| tRNA modification GTPase TrmE [Neisseria meningitidis ES14902] gi|325141474|gb|EGC63948.1| tRNA modification GTPase TrmE [Neisseria meningitidis 961-5945] gi|325204937|gb|ADZ00391.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240355] gi|325207354|gb|ADZ02806.1| tRNA modification GTPase TrmE [Neisseria meningitidis NZ-05/33] Length = 448 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 TR VR + + +DT G+ D ++ I S + AD+ ++VD Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVD 304 >gi|4467671|emb|CAB37787.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR+I ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRNINNRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVSNALNL 168 >gi|85858983|ref|YP_461185.1| tRNA synthase [Syntrophus aciditrophicus SB] gi|123516272|sp|Q2LSF6|MNME_SYNAS RecName: Full=tRNA modification GTPase mnmE gi|85722074|gb|ABC77017.1| tRNA synthase [Syntrophus aciditrophicus SB] Length = 457 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 V + G N GKS+L+N + K +IVT TTR + +S + + +DT GI Sbjct: 219 GATVVIAGKPNTGKSSLLNCLLQEKRAIVTPVPGTTRDFIEEAISIQGVSVRMIDTAGIH 278 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D IR+ W + AD V L++D ++L +LK + + L+ ++NK D Sbjct: 279 PTDDLIECEGIRMVWEKLATADGVILLLDGSKDLTDEDRKILKRL--QGYNLLPVINKAD 336 >gi|330952339|gb|EGH52599.1| tRNA modification GTPase TrmE [Pseudomonas syringae Cit 7] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ S++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|310815879|ref|YP_003963843.1| GTP-binding protein HflX [Ketogulonicigenium vulgare Y25] gi|308754614|gb|ADO42543.1| GTP-binding protein HflX [Ketogulonicigenium vulgare Y25] Length = 432 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 16/193 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKS+L NR GA V T +R + +++ DT G + Sbjct: 205 IVALVGYTNAGKSSLFNRVTGADVLAKDQLFATLDPTMRRLTLPDGQEVIMSDTVGFISD 264 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAK----RSSRLILILN 138 + R + + AD++ V D SH + D+++ + + + ++ +LN Sbjct: 265 LPTQLVAAFRATLEEVLEADLILHVRDISHPQTAQQARDVMQILHQIGVPEDAPMLEVLN 324 Query: 139 KIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 KID + + R Q E A K + VSA G G + +L + + L P++ Sbjct: 325 KIDLLDEAGREAFQTEAARK----DAKIAVSALTGEGVEALLEQISAALA-PPFL----- 374 Query: 198 ISDLPMFHFTAEI 210 I DL + H ++ Sbjct: 375 IEDLRLPHTAGKL 387 >gi|283769536|ref|ZP_06342432.1| ribosome-associated GTPase EngA [Bulleidia extructa W1219] gi|283103804|gb|EFC05190.1| ribosome-associated GTPase EngA [Bulleidia extructa W1219] Length = 437 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 12/168 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + G + +DT GI A Sbjct: 5 VVAIVGRPNVGKSTIFNRLVGERMSIVEDIPGVTRDRLYGSAEWAGNSFRVIDTGGIQLA 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + ++ AD++ +V D + + + + K ++L +N+ID Sbjct: 65 NQPFQTEIRAQVDIAMEEADVILMVCDGQMGVMEDDRFIAGLLQKNKKPVVLAVNRID-- 122 Query: 144 KPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLP 187 +Q+ + N F E S G G DVL+ +P Sbjct: 123 ------DQSRMVNIYEFYELGLGDPMACSGIHGVGVGDVLDRCFELMP 164 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 4/131 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+LVN + + +IV++ TTR + + + + +DT GI Sbjct: 177 MAVIGEPNVGKSSLVNAILNEERAIVSNIQGTTRDAIDTPFTHEGKPYIIVDTAGIRKRG 236 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ D+V V+D ++ + + + +I+++NK D Sbjct: 237 KIYESIEKYSVLRAMRAIERCDVVLFVMDGEAGIREQDKHVAGYAVEMNKPIIIVVNKWD 296 Query: 142 CV-KPERLLEQ 151 V K +R + + Sbjct: 297 IVEKDDRTMNE 307 >gi|300022385|ref|YP_003754996.1| ribosome-associated GTPase EngA [Hyphomicrobium denitrificans ATCC 51888] gi|299524206|gb|ADJ22675.1| ribosome-associated GTPase EngA [Hyphomicrobium denitrificans ATCC 51888] Length = 460 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 10/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 VA+VG NAGKSTLVN +G I + TR V +S K I+ DT G+ A Sbjct: 196 VAIVGRPNAGKSTLVNALLGEDRMITGPEPGLTRDSVASELSYKGQSILLFDTAGLRRKA 255 Query: 84 K--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K ++ KL + +I+ A++V L++D+ R + + + + L++ +NK D Sbjct: 256 KITETAEKLAASDAVRSIRFAEVVVLLIDAERPFEHQDLTIGHRVTEEGRALVVAINKWD 315 Query: 142 CVKPER---LLE-QAEIANKLVFIEKTFMV--SATKGHGCDDVLNYLCST 185 + PE+ L E + +A L + +V SA G D +++ + T Sbjct: 316 LI-PEKQKALRELKKTVAESLAQVPNVSVVAISARSESGLDQLMSAIIKT 364 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL NR G + ++V+ TR G+ + +DT G+ A+ Sbjct: 2 VAIVGRPNVGKSTLFNRLTGTRAALVSDLPGLTRDRRDGVTDLFGVNLRLIDTAGLEEAR 61 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 S M + + I+ AD+V V+D+ R IA++S + ++L+ NK + Sbjct: 62 QGSIADRMRKQTEQAIEAADLVLFVIDA-RAGVTGADTSFARIARQSGKPVVLVANKAEG 120 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + +L+ + + +SA G G D+ + + L L Sbjct: 121 RKGTDGVLDAFSLG-----LGAPIAISAEHGEGIGDLATDIFAALGL 162 >gi|237801669|ref|ZP_04590130.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024528|gb|EGI04584.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ ++ L E ++ S++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAMDPFALWPEFLEQRPDPSKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|189462216|ref|ZP_03011001.1| hypothetical protein BACCOP_02899 [Bacteroides coprocola DSM 17136] gi|189431069|gb|EDV00054.1| hypothetical protein BACCOP_02899 [Bacteroides coprocola DSM 17136] Length = 437 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN--- 82 A+VG NAGKS++VN F+G + +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRKKNK 238 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++D + ++R S +I+++D+ L++D+ R ++ ++ I + L++++NK D Sbjct: 239 VSEDLEYYSVVR-SIRSIENSDVCILMLDATRGIEGQDLNIFSLIQRNQKGLVVVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 LVE 300 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 18/189 (9%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR + +IV + TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILIL 137 N++D + + + + I AD+V VVD +L + + +L+ + + +I++ Sbjct: 62 VNSEDIFEEEIRKQVVLAIDEADVVLFVVDVTNGVTDLDMQVASILR---RAKTPVIVVA 118 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D + AE + + + + +SA G G D+L+ + S +D+ Sbjct: 119 NKTD--NNDLQYNAAEFYS--LGLGDPYCISALSGSGTGDLLDLIVSKFK-----KESDE 169 Query: 198 I--SDLPMF 204 I D+P F Sbjct: 170 ILDEDIPRF 178 >gi|18075605|emb|CAD11198.1| GTP-binding protein [Helicobacter pylori] Length = 347 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 20/200 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV---YS 194 NKID K + E+A A + K+F +S + G +++ + + L L + Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLD 178 Query: 195 ADQISDLPMFHFTAEITREK 214 AD + L + E T+E+ Sbjct: 179 ADILESLETPNNALEETKEE 198 Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|18075593|emb|CAD11192.1| GTP-binding protein [Helicobacter pylori] gi|99905869|gb|ABF68629.1| YphC [Helicobacter pylori] gi|122700765|emb|CAL87971.1| GTPase [Helicobacter pylori] gi|122700825|emb|CAL88001.1| GTPase [Helicobacter pylori] gi|122701713|emb|CAL88246.1| GTPase [Helicobacter pylori] gi|122701715|emb|CAL88247.1| GTPase [Helicobacter pylori] gi|122702333|emb|CAL88357.1| GTPase [Helicobacter pylori] gi|122702499|emb|CAL88440.1| GTPase [Helicobacter pylori] gi|122702553|emb|CAL88466.1| GTPase [Helicobacter pylori] gi|122702679|emb|CAL88529.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|330443932|ref|YP_004376918.1| GTP-binding protein engA [Chlamydophila pecorum E58] gi|328807042|gb|AEB41215.1| GTP-binding protein engA [Chlamydophila pecorum E58] Length = 483 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 +A++G N GKS+L NR ++IV + TTR + G +S I +DT G+ ++ Sbjct: 4 IAILGRPNVGKSSLFNRLCKRSLAIVNAEEGTTRDRLYGSAQICDSTIQVIDTGGVNKDS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D + K + + + K AD++ LVVD + L K + + +IL+ NK D Sbjct: 64 QDHFQKHIFKQALVGAKEADLLLLVVDIRCGITEQDMQLAKLLRPLNKPIILVANKADSR 123 Query: 144 KPE 146 K E Sbjct: 124 KDE 126 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 3/127 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+++N + + I + TTR V + ++++ +F+DT G+ Sbjct: 223 IALIGRPNVGKSSIINGLLNEERCITDNIPGTTRDNVDILYTKEDRSYLFIDTAGLRKMK 282 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+S + + I ADI LVVD+ + L +L I+K IL++NK D Sbjct: 283 SVKNSVEWISTSRTEKAISRADICLLVVDATQGLSSYDKRILSLISKEKKPHILLVNKWD 342 Query: 142 CVKPERL 148 + R+ Sbjct: 343 LMHSIRM 349 >gi|297531687|ref|YP_003672962.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3] gi|297254939|gb|ADI28385.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3] Length = 462 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 5/129 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATVIIGRPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ H L L I + I+I+NK Sbjct: 282 IRETEDVVERIGVERSQQMLKRADLILLVLNYHEPLTEEDERLFAMIEGMDA--IVIVNK 339 Query: 140 IDCVKPERL 148 D P R+ Sbjct: 340 TDL--PRRI 346 >gi|122702747|emb|CAL88563.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A + + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEK---ERAYVFSSF-GIPKSFNISVSHNRGISVLIDAILDALNL 168 >gi|122702373|emb|CAL88377.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGIGALIDAVLNALNL 168 >gi|15892953|ref|NP_360667.1| GTP-binding protein EngA [Rickettsia conorii str. Malish 7] gi|24636839|sp|Q92GU2|DER_RICCN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15620147|gb|AAL03568.1| conserved GTP-binding protein [Rickettsia conorii str. Malish 7] Length = 447 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 + LVG N GKSTL NR K +IV TR R K FL DTPG+ Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRD--RKYTDGKIGSFEFLLIDTPGLDE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S + +I + I AD++C +VD + + L + K + IL++NK C Sbjct: 64 NPNSMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 122 ---EKAFDFDKEYYKLGF-DSMIAISAEHGTGLIDLYDEIIAKLP 162 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 13 KDFVQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 K + D + C+ +V G NAGKST +N + + + + TR + K + Sbjct: 168 KTNIADPIKGDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNN 227 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 I +DT G+ +S KL + ++IK A+ V L++D+ LK ++ + Sbjct: 228 HIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQDLNIASHVV 287 Query: 128 KRSSRLILILNKIDCVK 144 +++++NK D VK Sbjct: 288 HEGRSIVIVVNKWDLVK 304 >gi|118580147|ref|YP_901397.1| GTP-binding protein EngA [Pelobacter propionicus DSM 2379] gi|171704446|sp|A1APR9|DER_PELPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118502857|gb|ABK99339.1| small GTP-binding protein [Pelobacter propionicus DSM 2379] Length = 448 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 11/155 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 VALVG N GKSTL NR +G + +IV TR +++ E + +DT G Sbjct: 5 VALVGRPNVGKSTLFNRLLGHRRAIVDDTPGVTRDRNYALINRFEKPFILIDTGGFEPVT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 +D + M S ++ AD++ ++D+ L V + ++L+ + K ++ ++NK+ Sbjct: 65 EDRLLQQMREQSSLAMEEADVIIFMMDARSGLTPADVEVANMLRRVKK---PVMYVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 D K E + AE + + +E + +SA G Sbjct: 122 DGEKLEN--DSAEFYS--LGVENLYTISAEHNRGV 152 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+LVNR +G + + TTR V + + + +DT GI Sbjct: 178 IAVVGRPNVGKSSLVNRLLGFERVVANPTAGTTRDSVDTLFMCNKKPYLLIDTAGIRRKG 237 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + KL + + +I+ AD+V +V+D+ + + + + + + +LNK D Sbjct: 238 KTTEKLEKYSVVDALRSIERADVVLVVLDATQGVTEQDERIAGYVHEAGRACVFVLNKWD 297 Query: 142 CVK 144 ++ Sbjct: 298 AIE 300 >gi|325201374|gb|ADY96828.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240149] Length = 448 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 TR VR + + +DT G+ D ++ I S + AD+ ++VD Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVD 304 >gi|315641243|ref|ZP_07896320.1| ribosome-associated GTPase EngA [Enterococcus italicus DSM 15952] gi|315483010|gb|EFU73529.1| ribosome-associated GTPase EngA [Enterococcus italicus DSM 15952] Length = 442 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + +DT GI + Sbjct: 11 TIAIVGRPNVGKSTVFNRIAGERISIVEDTPGVTRDRIYATGEWLGKDFSIIDTGGIDLS 70 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + I AD++ V S RE + + + + RS + +IL +NK+D Sbjct: 71 DEPFMEQIKHQAEIAIDEADVIVFVT-SAREGITDADESVAHLLYRSKKPVILAVNKVD- 128 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE E E + + + + + +S + G G DVL+ Sbjct: 129 -NPEMRAEIYEFYS--LGLGEPYPISGSHGLGLGDVLD 163 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGI---F 81 +L+G N GKS+L+N +G IV+ TTR +I SE + +DT G+ Sbjct: 184 SLIGRPNVGKSSLINAILGEDRVIVSDVEGTTRDAIDTHFTSESGQEFTMIDTAGMRKRG 243 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ +D+V +V+++ ++ + + +I+I+NK D Sbjct: 244 KVYESTEKYSVMRAMRAIERSDVVLVVLNADEGIREQDKKIAGYAHEEGRGIIIIVNKWD 303 Query: 142 CVK 144 VK Sbjct: 304 LVK 306 >gi|289677543|ref|ZP_06498433.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae FF5] Length = 446 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 208 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 267 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ S++ LI NK Sbjct: 268 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKA 327 Query: 141 D 141 D Sbjct: 328 D 328 >gi|297588067|ref|ZP_06946711.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516] gi|297574756|gb|EFH93476.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516] Length = 452 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N + +IVT TTR ++ + + DT G Sbjct: 215 RDGINTTIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAG 274 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S S I +D++ + DS RE +L I R + I++LNK Sbjct: 275 IRDTEDIVEKIGVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLI--RDKKSIVLLNK 332 Query: 140 ID 141 ID Sbjct: 333 ID 334 >gi|165933610|ref|YP_001650399.1| GTP-binding protein Der [Rickettsia rickettsii str. Iowa] gi|189037156|sp|B0BUT3|DER_RICRO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|165908697|gb|ABY72993.1| GTP-binding protein [Rickettsia rickettsii str. Iowa] Length = 447 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 + LVG N GKSTL NR K +IV TR R K FL DTPG+ Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRD--RKYTDGKIGSFEFLLIDTPGLDE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S + +I + I AD++C +VD+ + + L + K + IL++NK C Sbjct: 64 HPNSMGERLIEQTTKAILEADLICFMVDARSGILPDDKLLSSFVRKYNKPAILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 122 ---EKAFDFDKEYYKLGF-DSMIAISAEHGTGLIDLYDEIIAKLP 162 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D + C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 171 IADPIKGDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIK 230 Query: 74 FLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S KL + ++IK A+ V L++D+ LK ++ + Sbjct: 231 LIDTAGLRKKSTITESLEKLSASDTINSIKLANTVILMIDALAPLKQQDLNIASHVVNEG 290 Query: 131 SRLILILNKIDCVK 144 +++++NK D VK Sbjct: 291 RSIVIVVNKWDLVK 304 >gi|309389847|gb|ADO77727.1| GTP-binding proten HflX [Halanaerobium praevalens DSM 2228] Length = 409 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 14/176 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 + N + VA+VG TNAGKSTL+N A T S +R I+ D Sbjct: 183 RSNRKDPMVAIVGYTNAGKSTLINNLAAANSYTADKLFATLDSTMRKFELPVGQNIIISD 242 Query: 77 TPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRS 130 T G + H+L+ R + I++AD++ ++D S+ +++ NI + ++++ K Sbjct: 243 TVGFISKLP--HQLIASFRTTLEEIENADLILHLIDASNSDIEKNIKIVNQEIRKLKKSK 300 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +++I + NKID +K +L A+ + + +SA K + +++ L + Sbjct: 301 AKVIKVFNKIDLIKKSKL------ADFKIIYPNSIFISALKKINIESIIDKLNEVI 350 >gi|254294311|ref|YP_003060334.1| GTP-binding protein EngA [Hirschia baltica ATCC 49814] gi|254042842|gb|ACT59637.1| small GTP-binding protein [Hirschia baltica ATCC 49814] Length = 483 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 11/167 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI--VRGIVSEKESQIVFLDTPGIFN 82 VA+VG N GKSTL NR VG K+++V + TR RG + + E + +DT G + Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKKIALVDDQPGVTRDRKEARGRLGDLE--LDLIDTAGFDD 62 Query: 83 AKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 D S M R + I AD+ V+D+ R I + ++ +++ + IL+ NK Sbjct: 63 VNDASLEARMRRQTEMAIAEADVSLYVIDA-RVGVTPIDRVFSKLLRQADKPTILVANKC 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + L + A L F E + SA G G D+ L P Sbjct: 122 EGRQGDVGLTE---AFSLGFNEPVAL-SAEHGEGMSDLYQALLEAAP 164 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 27/169 (15%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FNA 83 +VG NAGKSTL+N + + + + TR V + ++ +DT G+ Sbjct: 205 VVGRPNAGKSTLLNSLLQSDRLLTGPEAGITRDSVTVAWEYEGREMRLVDTAGLRKKAKV 264 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILNKI 140 ++ K+ + +IK+AD+V +V+DS + + I DL + + ++ + K Sbjct: 265 QERLEKMSTGETIHSIKYADVVAIVMDSRDAFEKQDLQIADL---VLREGRGVVFVCTKW 321 Query: 141 DCV------------KPERLLEQAEIANKLVFIEKT------FMVSATK 171 D V K RLL QA+ A L +T MV+A K Sbjct: 322 DLVENGGELRKELEDKARRLLPQAKGAPLLTVSGETGRNLDKMMVAAAK 370 >gi|238881895|gb|EEQ45533.1| conserved hypothetical protein [Candida albicans WO-1] Length = 499 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 +AL+G NAGKS+++N +IV+ TTR I+ + ++V DT GI F Sbjct: 252 LALLGPPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFE 311 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVD--SHRELKVNIHDLLKEIAKRSSRLILILNKI 140 DS + I+ + AD+V +V+D S + + + + LK + K + +++++LNK Sbjct: 312 EADSIEQEGIKRAKQRSMLADLVIVVLDPMSVEKEPLELKEHLKTLVKANKQMLIVLNKQ 371 Query: 141 DCVKPERLLEQAEIANKLVFIEKTF--MVSATKGHGCDDVLNYL 182 D R E ++L+ + K + +VS + G G D++ L Sbjct: 372 DLF-ASRSEEMISNYSRLLDLPKNYFHVVSCSTGSGIDNLQKLL 414 >gi|197117132|ref|YP_002137559.1| GTP-binding protein EngA [Geobacter bemidjiensis Bem] gi|238690874|sp|B5EE25|DER_GEOBB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|197086492|gb|ACH37763.1| GTPase EngA [Geobacter bemidjiensis Bem] Length = 440 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A+VG N GKSTL NR VG + ++V TR V+ + + +DT G Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVNRFDVPFILVDTGGFEPET 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + M S + AD++ ++D+ L D++ + + + + I+NK+D Sbjct: 65 SDRLLQQMREQSRFAMDEADLILFIMDARGGLTPADRDVVDMLRRINKPVFYIINKVDGE 124 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 K ++AE + ++ +SA G D+++ + + +P Sbjct: 125 K-----QEAEAGDFYSLGVDHIHTISAEHNRGVGDLMDEVLAAIP 164 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVNR +G + + TTR V + + + +DT GI Sbjct: 178 IAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRKG 237 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+ + + +I+ AD+V +V+++ + + + I ++NK D Sbjct: 238 KTVQKVEKYSVMDALRSIERADVVLIVLNAEEGVTEQDSKIAGYAYEAGRGCIFVVNKWD 297 Query: 142 CV 143 + Sbjct: 298 TL 299 >gi|122701695|emb|CAL88237.1| GTPase [Helicobacter pylori] gi|122701699|emb|CAL88239.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|94497206|ref|ZP_01303778.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58] gi|94423311|gb|EAT08340.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58] Length = 363 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 8/168 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG NAGKSTL+N+ K + + TT+ + G+V ++ + V D PG+ Sbjct: 177 VGLVGMPNAGKSTLINQVTNTKAKVGAYAFTTTKPQL-GVVLHRDREFVLADIPGLIEGA 235 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL-KEIAKRSSRL-----ILILN 138 + R I+ ++ ++D+ + V ++ E+A L ++ LN Sbjct: 236 AEGAGIGDRF-LGHIERCRVLLHLIDATGDDPVEAFRIVTDELAAYGGGLDEKPQLVALN 294 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K D + E + + A+ + +E F++S G G +L+ + L Sbjct: 295 KGDLLGQELMEDIADQLREEAGVEDVFIISGATGEGVGALLDAVLPML 342 >gi|304440203|ref|ZP_07400093.1| ribosome-associated GTPase EngA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371252|gb|EFM24868.1| ribosome-associated GTPase EngA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 442 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 13/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 V+++G N GKSTL N+ VG K+SI TR + S + + + +DT G+ Sbjct: 10 VSIIGKPNVGKSTLFNKIVGRKISITEDTPGVTRDRIYSDASWQGRKFLLVDTGGLDLKD 69 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D + + + ++ +D++ V+D L D+ K + + + ++IL +NK D Sbjct: 70 EDIFMSSIKGQADLALETSDVIIFVLDGIHGLSPTDVDIAKYLRRSNKKIILCINKYDS- 128 Query: 144 KPERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLNYLCS 184 ++ N F E ++SA +G G D+L+ + S Sbjct: 129 -------KSAKDNYYDFFELGLGIPVLISAEQGTGVGDLLDIVTS 166 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G N GKS+L+N +G + SIVT TTR + K++++ +DT G+ K Sbjct: 182 VTLIGKPNVGKSSLINFILGEERSIVTDIPGTTRDSIDSHFIYKDTELTLVDTAGLRKKK 241 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + + + + I+ +++ L++D+ + ++ + +++ +NK D Sbjct: 242 KINEAVERYSVIRTLTAIERSNVCILLIDAEEGVSEQDSKIVGYAHDNNKAIVVAVNKWD 301 Query: 142 CV-KPERLLEQAE--IANKLVFIEKT--FMVSATKGHGCDDVLN 180 V K +++ E I +L FI +SA G D +L+ Sbjct: 302 AVTKDNDSIKKYEKSIRERLPFINYAPIIFISALTGQRVDKLLD 345 >gi|229829020|ref|ZP_04455089.1| hypothetical protein GCWU000342_01105 [Shuttleworthia satelles DSM 14600] gi|229792183|gb|EEP28297.1| hypothetical protein GCWU000342_01105 [Shuttleworthia satelles DSM 14600] Length = 441 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 6/167 (3%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-F 81 VA+VG N GKSTL N G ++SIV TR + VS + + +DT GI Sbjct: 4 AVVAVVGRPNVGKSTLFNALAGERISIVEDTPGVTRDRIYADVSWLDHEFTMIDTGGIEP 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 ++ D M + I AD++ + D + L V+ + ++ +RS + ++L++NK+ Sbjct: 64 DSSDIILSQMREQAQIAIDTADVIIFMTDVRQGL-VDADAKVADMLRRSKKPIVLVVNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + +++ E N + I +SA G D+L+ + + P Sbjct: 123 DDFD-KHVMDSYEFYN--LGIGDPHPISAAGKLGFGDMLDAVIAHFP 166 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+L+NR G + IV+ TTR V V + +F+DT G+ Sbjct: 180 IAVVGKPNVGKSSLINRLCGKQRLIVSDIAGTTRDAVDTRVRFNKKDYIFVDTAGLRRKS 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I + + ++ AD+V LV+D + + +R +I+ +NK D Sbjct: 240 RIQGDIERYSIVRAVAAVEKADVVVLVIDGAEGVSEQDAKIAGIAHERGKAVIIAVNKWD 299 Query: 142 CVKPE 146 V+ + Sbjct: 300 AVEKD 304 >gi|229829511|ref|ZP_04455580.1| hypothetical protein GCWU000342_01603 [Shuttleworthia satelles DSM 14600] gi|229791942|gb|EEP28056.1| hypothetical protein GCWU000342_01603 [Shuttleworthia satelles DSM 14600] Length = 482 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 21 RSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + A+VG NAGKS+L+N G +IVT TTR + V + +DT G Sbjct: 235 RDGILTAIVGRPNAGKSSLLNALAGRDRAIVTDIPGTTRDTLEERVRLGNLALRLIDTAG 294 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS--SRLILIL 137 I ++D ++ + + +++ AD++ V+D+ L+ +L +++ I++L Sbjct: 295 IRESEDRIEQIGVEKARKSMEEADLIIFVMDASLPLENEDCKMLNQLSSHGYLEHSIILL 354 Query: 138 NKIDCVKPERLLEQAEIANKLVFI--EKTFMVSATKGHGCD 176 NK+D +L +I L + ++ VSA + G D Sbjct: 355 NKMDLTS---ILSAEQIQQVLPQLNPDRILSVSARREEGLD 392 >gi|189499228|ref|YP_001958698.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides BS1] gi|189494669|gb|ACE03217.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides BS1] Length = 473 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 17/161 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 A++G NAGKSTL+N +G + +IV+H TTR + +++ DT G+ A Sbjct: 232 ATAIIGRPNAGKSTLLNALLGEERAIVSHMPGTTRDYIEECFIYEKTMFRLTDTAGLREA 291 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + IR S+ I AD++ ++D + E + +L ++ +L+++ NK Sbjct: 292 AEEIEHEGIRRSYEKIAEADLILYLLDIGASDYEEETSTVTELRQK--HPDIQLLVVANK 349 Query: 140 IDCVKPERLLEQAEIANKLVFIEKT----FMVSATKGHGCD 176 D + + AE + K+ EKT +SA K G D Sbjct: 350 TDTTE-----DSAERSEKVA--EKTGCQVLGISALKEDGLD 383 >gi|167749645|ref|ZP_02421772.1| hypothetical protein EUBSIR_00603 [Eubacterium siraeum DSM 15702] gi|167657398|gb|EDS01528.1| hypothetical protein EUBSIR_00603 [Eubacterium siraeum DSM 15702] Length = 400 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 5/126 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV-RGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+L+N G ++++V+ TT V + + ++ DTPG+ + Sbjct: 14 IGIFGRRNAGKSSLINAITGQELAVVSDTAGTTTDPVSKAMELLPLGPVMITDTPGLDDE 73 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK---I 140 D L +R S+ + DI LVVDS + + +L+ + K++ I+++NK + Sbjct: 74 GD-LGSLRVRKSYQVLFKTDIALLVVDSTKGISDFDSAILERLKKQNIPYIIVMNKCGLL 132 Query: 141 DCVKPE 146 D V P+ Sbjct: 133 DTVPPK 138 >gi|122701379|emb|CAL88079.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|122700643|emb|CAL87910.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGAPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|18075603|emb|CAD11197.1| GTP-binding protein [Helicobacter pylori] gi|122700743|emb|CAL87960.1| GTPase [Helicobacter pylori] gi|122700913|emb|CAL88045.1| GTPase [Helicobacter pylori] gi|122702779|emb|CAL88579.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|330970320|gb|EGH70386.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ S++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|319404573|emb|CBI78179.1| GTP-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 477 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V + TR R I S K + F +DT G+ Sbjct: 4 TIAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRD--RRIHSAKLQDLHFDVIDTAGLE 61 Query: 82 NAKDSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 A + H L R+ T I AD++ V+D+ + + D I K ++L+ N Sbjct: 62 EADN--HTLEGRMRAQTKIAIDEADLILFVLDAKSGITPSDLDFSSLIRKSGKPIVLVSN 119 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K + + E + + + +SA GHG D+ + + + + Sbjct: 120 KSES----KTAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAI 163 Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 7/138 (5%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 +D V D ++ +A+VG N GKSTL+N + + + TR + + Sbjct: 196 EEDPVYDEKKTIRIAVVGRPNTGKSTLINSMLKQDRLLTGPEAGITRDSISVDWEWNNRR 255 Query: 72 IVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIA 127 I DT G+ ++ +L + S I+ A++V +V D+ + DL + ++ Sbjct: 256 IKLFDTAGLRRKSKVQEKLERLSVVDSLRAIRFAEVVVIVFDATTSFEK--QDLQISDLV 313 Query: 128 KRSSRL-ILILNKIDCVK 144 R R+ I+ NK D ++ Sbjct: 314 IREGRVPIIAFNKWDLIE 331 >gi|308184621|ref|YP_003928754.1| GTP-binding protein EngA [Helicobacter pylori SJM180] gi|308060541|gb|ADO02437.1| GTP-binding protein EngA [Helicobacter pylori SJM180] Length = 462 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + E+A A + K+F +S + G +++ + + L L Sbjct: 128 DKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 169 Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHRG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|238650994|ref|YP_002916850.1| GTP-binding protein EngA [Rickettsia peacockii str. Rustic] gi|259645885|sp|C4K2K1|DER_RICPU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238625092|gb|ACR47798.1| GTP-binding protein EngA [Rickettsia peacockii str. Rustic] Length = 447 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 + LVG N GKSTL NR K +IV TR R K FL DTPG+ Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRD--RKYTDGKIGSFEFLLIDTPGLDE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S + +I + I AD++C +VD + + L + K + IL++NK C Sbjct: 64 NPNSMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 122 ---EKAFDFDKEYYKLGF-DSMIAISAEHGTGLIDLYDEIIAKLP 162 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D + C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 171 IADPIKGDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIK 230 Query: 74 FLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S KL + ++IK A+ V L++D+ LK ++ + Sbjct: 231 LIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQDLNIASHVVNEG 290 Query: 131 SRLILILNKIDCVK 144 +++++NK D VK Sbjct: 291 RSIVIVVNKWDLVK 304 >gi|254525288|ref|ZP_05137343.1| GTP-binding proten HflX [Stenotrophomonas sp. SKA14] gi|219722879|gb|EED41404.1| GTP-binding proten HflX [Stenotrophomonas sp. SKA14] Length = 436 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 73/170 (42%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL N GA+ T VR I +V DT G + Sbjct: 200 VALVGYTNAGKSTLFNAMTGAEAYAADQLFATLDPTVRRIAVPG-GNVVLADTVGFV--R 256 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSSRLILILN 138 D H L+ R + S + AD + VVD+ HRE ++ + ++L + +L+ N Sbjct: 257 DLPHDLVAAFRSTLSEAREADFLLHVVDAADPHREERIAQVDEVLTAVGAGDLPQLLVFN 316 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID + + + + +SA G G D + L L L Sbjct: 317 KIDRIDGADVRHDGQDGIPDESRRERVWISARDGRGLDLLQAVLGKRLGL 366 >gi|18075575|emb|CAD11183.1| GTP-binding protein [Helicobacter pylori] gi|122702579|emb|CAL88479.1| GTPase [Helicobacter pylori] gi|122702809|emb|CAL88594.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|56422029|ref|YP_149347.1| tRNA modification GTPase TrmE [Geobacillus kaustophilus HTA426] gi|261420902|ref|YP_003254584.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61] gi|319768573|ref|YP_004134074.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52] gi|81346199|sp|Q5KU57|MNME_GEOKA RecName: Full=tRNA modification GTPase mnmE gi|56381871|dbj|BAD77779.1| thiophen/furan oxidation protein [Geobacillus kaustophilus HTA426] gi|261377359|gb|ACX80102.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61] gi|317113439|gb|ADU95931.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52] Length = 462 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++G N GKS+L+N +IVT TTR ++ V+ + + +DT GI Sbjct: 226 ATVIIGRPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRET 285 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D ++ + S +K AD++ LV++ H L L I + I+I+NK D Sbjct: 286 EDVVERIGVERSQQMLKRADLILLVLNYHEPLTEEDERLFAMIEGMDA--IVIVNKTDL- 342 Query: 144 KPERL 148 P R+ Sbjct: 343 -PRRI 346 >gi|88802177|ref|ZP_01117705.1| GTP-binding protein EngA [Polaribacter irgensii 23-P] gi|88782835|gb|EAR14012.1| GTP-binding protein EngA [Polaribacter irgensii 23-P] Length = 436 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 7/184 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + VA+VG N GKSTL NR V + +IV TR G + +DT G Sbjct: 2 NSIVAIVGRPNVGKSTLFNRLVQRRDAIVDSVSGVTRDRHYGKSDWNGKEFSVIDTGGYS 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + IR + I+ ADI+ VVD + ++ K + K + + +NK+ Sbjct: 62 IGSDDIFEEEIRKQVTLAIEEADIIVFVVDVEEGITPMDAEVAKILRKIKKPIFVTVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D R E N + + +S+ G G D+L+ + + +P AP +Q+ + Sbjct: 122 DNAM--RDANAVEFYN--LGLGGYHTISSINGSGTGDLLDAIAAKMP-APEAVDLEQV-E 175 Query: 201 LPMF 204 LP F Sbjct: 176 LPRF 179 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G +IVT+ TTR + + +DT GI Sbjct: 180 AVVGRPNAGKSSFINALIGKDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKKSK 239 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + +I++AD++ LVVD+ R + + K +I+++NK D Sbjct: 240 VKEDLEFYSVMRAVRSIEYADVIILVVDATRGFEGQDQSIFWLAEKNRKGVIILINKWDL 299 Query: 143 VKPE 146 V+ E Sbjct: 300 VEKE 303 >gi|292806606|gb|ADE42433.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLSVLNL 168 >gi|292806500|gb|ADE42380.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|169831271|ref|YP_001717253.1| HSR1-like GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] gi|169638115|gb|ACA59621.1| GTP-binding protein, HSR1-related [Candidatus Desulforudis audaxviator MP104C] Length = 422 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 104/255 (40%), Gaps = 34/255 (13%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI H+ ++ + VALVG TNAGKS+L+N GA VS+ T Sbjct: 181 EIAEVRRHRQLLRRARKVAPVPLVALVGYTNAGKSSLLNALTGAVVSVEDRLFATLDPTS 240 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKV 117 R + +V DT G + R + + AD++ VVD +H+ Sbjct: 241 RQLRLPTNEVVVLTDTVGFIRHLPHHLVAAFRATLEEVVEADLLLHVVDLSHPAHQAHIT 300 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGC 175 + +L+E+ +++ NK D V+P LL + ++A VSA G G Sbjct: 301 AVDGVLEELGAGGKPRLMVFNKTDLVEPGELDLLGRNDVA-----------VSALTGAGL 349 Query: 176 DDVLNYLCSTLPLAPW--------VYSADQISDLPMFH--FTAEITREKLFLHLHKEIPY 225 D + + L+ W YS Q+ L H AE RE + + E+P Sbjct: 350 DTLRAAVADA--LSTWRTRERFLIPYSRTQLVALAYEHGRVLAEHHRED-GVEIEVELPV 406 Query: 226 S-SCVVTEKWEEKKD 239 + + + + EE+ D Sbjct: 407 AWARRIAARLEEQAD 421 >gi|149925382|ref|ZP_01913646.1| tRNA modification GTPase TrmE [Limnobacter sp. MED105] gi|149825499|gb|EDM84707.1| tRNA modification GTPase TrmE [Limnobacter sp. MED105] Length = 459 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 18/172 (10%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + LVG N GKS+L+N G +++IV+ TTR ++ ++ + +V +DT G Sbjct: 227 RDGLQIVLVGEPNVGKSSLLNALAGEEIAIVSAIAGTTRDRIKQELNIRGIPLVLVDTAG 286 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL--ILIL 137 + D ++ I + +++ AD++ ++ D+ + HD L + + L + +L Sbjct: 287 LRETVDEVERIGIERTRKSVQEADLLLILKDATQ----GPHDALHQHLELPVHLPTLTVL 342 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 NK+D + PE A +L ++ VSA G G + + + + + + +A Sbjct: 343 NKVDLL-PE--------APQL--LQDVLPVSAKNGQGLEQLKDAILAKVGIA 383 >gi|122701551|emb|CAL88165.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|77461959|ref|YP_351466.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf0-1] gi|123602666|sp|Q3K429|MNME_PSEPF RecName: Full=tRNA modification GTPase mnmE gi|77385962|gb|ABA77475.1| putative tRNA modification GTPase [Pseudomonas fluorescens Pf0-1] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR I+R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 D K+ + + I AD V LVVD+ + L E + +++ LI NK Sbjct: 278 DDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPFALWPEFLETRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|330976397|gb|EGH76454.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ S++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|309378889|emb|CBX22476.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 448 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 191 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 250 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 TR VR + + +DT G+ D ++ I S + AD+ ++VD Sbjct: 251 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVD 304 >gi|317154571|ref|YP_004122619.1| GTP-binding protein Obg/CgtA [Desulfovibrio aespoeensis Aspo-2] gi|316944822|gb|ADU63873.1| GTP-binding protein Obg/CgtA [Desulfovibrio aespoeensis Aspo-2] Length = 342 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 24/177 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G NAGKST +++ AK I + T + I +++ ++V D PG+ Sbjct: 169 VGLLGLPNAGKSTFISQVSAAKPKIAAYPFTTLHPNLGVIENDEFERMVIADIPGLIEGA 228 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVV--------------DSHRELKVNIHDLLKEIAKRS 130 + + L + +KH + +V D + L +H+ E+A+++ Sbjct: 229 SA----GLGLGITFLKHVERTRFLVHILAAEDLNRDNPADGYDMLNQELHEYSPELAQKT 284 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFI-EKTFMVSATKGHGCDDVLNYLCSTL 186 I ++NKID + + L AEI +K+ +K F +SA G G D ++ + TL Sbjct: 285 Q--IRVINKIDTLGDDEL---AEIRSKVEGTGQKVFFISALTGQGVDKLVAEMWRTL 336 >gi|240138138|ref|YP_002962610.1| tRNA modification GTPase trmE [Methylobacterium extorquens AM1] gi|240008107|gb|ACS39333.1| tRNA modification GTPase trmE [Methylobacterium extorquens AM1] Length = 444 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 33/165 (20%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CV LVGA NAGKSTL+N G +IV+ TTR + +V +DT G+ Sbjct: 226 CVVLVGAPNAGKSTLLNALSGRDAAIVSDIPGTTRDTIEVRCDLGGLPVVLVDTAGLRET 285 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVV------DSHRELKVNIHDLLKEIAKRSSRLILIL 137 D+ ++ + S I+ AD+V +V D+ R V + +L+ Sbjct: 286 ADAIEAEGVKRTQSRIRSADLVLHLVPADGKADAGRFADVPV--------------LLVR 331 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K D + PE V E +SA G G D +L+ + Sbjct: 332 TKTD-LAPE------------VPGEGGLAISAVTGAGLDALLDAI 363 >gi|122701349|emb|CAL88064.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122700781|emb|CAL87979.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 19/170 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID K ER + I K+F +S + G +++ + L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRAL 166 >gi|325000201|ref|ZP_08121313.1| GTP-binding protein Der [Pseudonocardia sp. P1] Length = 441 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 5/140 (3%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 DF + VALVG N GKS+L+N+ G + S+V TT V +V Sbjct: 169 RDDFGASGAGPRRVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLVDLDGEV 228 Query: 72 IVFLDTPGIFN----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 F+DT G+ A + +R S S I+ A++ +++D+ + + +L +A Sbjct: 229 FRFVDTAGLRKRVKMASGMEYYASLRTS-SAIEAAEVALVLIDASQPIAEQDQRVLTMVA 287 Query: 128 KRSSRLILILNKIDCVKPER 147 + L+++ NK D V ER Sbjct: 288 EAGRALVILFNKWDLVDEER 307 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 10/170 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 +A+VG N GKSTLVNR +G + ++V TR + G+ + + ++ +DT G Sbjct: 6 TLAVVGRPNVGKSTLVNRMLGRREAVVQDVPGVTRDRVVYDGLWNGRRFKL--MDTGGWE 63 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + + + + ++ AD V LVVD+ + + + ++L K+D Sbjct: 64 PDADGLQGFVAQQAETAMRTADAVLLVVDASVGATATDQAAARVLRRAKVPVMLAATKVD 123 Query: 142 CVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +RL + AE+ + + + VS G G D+L+ + LP P Sbjct: 124 D---DRLTSDTAELWR--LGLGQPHPVSGLHGRGSGDLLDAILEVLPETP 168 >gi|255326352|ref|ZP_05367436.1| small GTP-binding protein [Rothia mucilaginosa ATCC 25296] gi|255296569|gb|EET75902.1| small GTP-binding protein [Rothia mucilaginosa ATCC 25296] Length = 570 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 16/193 (8%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ + E K + +R VA+ G TNAGKS+L+NR A V + T V Sbjct: 295 EIAAMAPARETKRLNRRRNRVPSVAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTV 354 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIH 120 R + DT G + + R + + AD++ VVD SH + + I Sbjct: 355 RKAQTPDGIGYTLSDTVGFVRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQIR 414 Query: 121 DLLKEIAKRSSR---LILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + + IA+ +R I++LNK D P ER+ ++ + +VSA G G Sbjct: 415 AVREVIAEVDARHIPEIIVLNKADAADPFVLERMRQRE---------PEHVIVSARTGEG 465 Query: 175 CDDVLNYLCSTLP 187 +++ + T+P Sbjct: 466 IEELKQKIADTIP 478 >gi|170744002|ref|YP_001772657.1| GTP-binding proten HflX [Methylobacterium sp. 4-46] gi|168198276|gb|ACA20223.1| GTP-binding proten HflX [Methylobacterium sp. 4-46] Length = 474 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 14/164 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR A+V T R I + DT G + Sbjct: 237 VALVGYTNAGKSTLFNRLTEAEVRAEDMLFATLDPTARAIKLPHGETAILSDTVGFISDL 296 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKE--IAKRSSRLILILN 138 + R + + ADI+ V D +H + + D +L E IA ++ R+I + N Sbjct: 297 PTMLIAAFRATLEDVIEADILLHVRDMAHEDTQAQGEDVQAVLAELGIAPQADRIIEVWN 356 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 K D + P ERLL + + ++SA G G D +L Sbjct: 357 KADLLGPEERERLLNLSRQTGT-----RPVLISALTGEGTDALL 395 >gi|148240676|ref|YP_001226063.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 7803] gi|205829179|sp|A5GPA1|MNME_SYNPW RecName: Full=tRNA modification GTPase mnmE gi|147849215|emb|CAK24766.1| tRNA modification GTPase [Synechococcus sp. WH 7803] Length = 460 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 46/86 (53%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+NR + +IVT TTR ++ + + I LDT GI Sbjct: 229 VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRATS 288 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 D+ +L I S + AD+V L+ D Sbjct: 289 DAVERLGIARSHDALASADLVLLLFD 314 >gi|122702791|emb|CAL88585.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGTPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702297|emb|CAL88339.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGVPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|315223865|ref|ZP_07865713.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea F0287] gi|314946195|gb|EFS98196.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea F0287] Length = 472 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKSTL+N + + +IV+ TTR + + F+DT GI + + Sbjct: 230 VAIVGKPNAGKSTLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQ 289 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + ++ + I+ A IV + D I +KE + ++ +L+ NK D Sbjct: 290 DQIEAIGVQKAKEKIEKASIVLYLFDVKDSSAQEIISFVKENYREGTKFVLLHNKTD 346 >gi|299133195|ref|ZP_07026390.1| tRNA modification GTPase TrmE [Afipia sp. 1NLS2] gi|298593332|gb|EFI53532.1| tRNA modification GTPase TrmE [Afipia sp. 1NLS2] Length = 439 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 20/158 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKSTL+NR + +IV+ TTR ++ + + +DT G+ Sbjct: 221 VAIAGPPNAGKSTLLNRLARREAAIVSPYAGTTRDVIEVHLDLDGYPVTLIDTAGLRETN 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + +R + + + AD+V + ++ + + D + L ++ NKID Sbjct: 281 DPVEQEGVRRARARAESADLVLWMCEAGDDAPPPLAD--------GAPLWVVRNKID--- 329 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +A E F +SA G G D V+ L Sbjct: 330 ---------LAATPTKGEGGFAISAATGQGVDAVVGSL 358 >gi|284044122|ref|YP_003394462.1| GTP-binding protein Obg/CgtA [Conexibacter woesei DSM 14684] gi|283948343|gb|ADB51087.1| GTP-binding protein Obg/CgtA [Conexibacter woesei DSM 14684] Length = 427 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 14/183 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 V LVG NAGKS+L++R A+ I + TT + V G + + Q+V D PG+ A Sbjct: 159 VGLVGLPNAGKSSLLSRITAAQPKIADYPF-TTLTPVLGTIESDDRQLVIADIPGLIEGA 217 Query: 84 KDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-----IL 135 D H + + + + + VD ++ N + +E++ +RL IL Sbjct: 218 SDGAGLGHDFLAHVERTRLLVHVLDLAPVDGTDPVE-NHATIEQELSAHDARLSGLPRIL 276 Query: 136 ILNKIDCVKPERLLEQAEIA--NKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L+K D V PE E AE+ +L S+ G G D++ L +P+ P V Sbjct: 277 ALSKTDLVTPEAAAE-AEVQWRERLGPDVPILRTSSATGEGLDELKKALLQYVPVTPPVE 335 Query: 194 SAD 196 AD Sbjct: 336 IAD 338 >gi|194476538|ref|YP_002048717.1| GTP-binding protein EngA [Paulinella chromatophora] gi|171191545|gb|ACB42507.1| GTP-binding protein EngA [Paulinella chromatophora] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTL NR ++ +IV ++ T R+ +G EK+ Q+V DT G+ Sbjct: 6 VAIIGRPNVGKSTLANRLCQSREAIVHDELGVTRDRTYQKGFWGEKQFQVV--DTGGLVF 63 Query: 83 AKDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + + A + ++VD + L + + + S ++L +NK Sbjct: 64 DDDSEFLPEIRKQAIIALSEATVAVVIVDGQQGLTAADETIAEFLRGHSCPILLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 C PE+ L A L + F +SA G G ++L+ + + L Sbjct: 122 CESPEQGLSMAAEFWSL-GLGTPFPISAIHGAGTGELLDKIVTYL 165 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 15/181 (8%) Query: 7 TFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 T E D VQ +A+VG N GKS+L+N G +IV+ TTR + V Sbjct: 168 TTIEEENDIVQ-------LAIVGRPNVGKSSLLNAICGETRAIVSQIRGTTRDTIDTYVE 220 Query: 67 EKESQIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 + +DT GI + + I S+ I+ +D+ L++D+ + L Sbjct: 221 REGYHWRLIDTAGIRRRRSVDYGPELFSINRSFKAIERSDVCLLIIDALDGVTEQDQRLA 280 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQA---EIANKLVFIEKTFM--VSATKGHGCDDV 178 I + I+I+NK D ++ + A ++ +KL F+ M +SA KG + + Sbjct: 281 GRIEEEGRACIIIINKWDAIEKDSHTMSAMEKDLRSKLYFLNWAPMLFISALKGQRVESI 340 Query: 179 L 179 Sbjct: 341 F 341 >gi|163869379|ref|YP_001610635.1| tRNA modification GTPase TrmE [Bartonella tribocorum CIP 105476] gi|205829117|sp|A9IZY1|MNME_BART1 RecName: Full=tRNA modification GTPase mnmE gi|161019082|emb|CAK02640.1| tRNA modification GTPase [Bartonella tribocorum CIP 105476] Length = 435 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 58/111 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + GA N+GKS+++NR G V+IVT + TTR + + I DT G + Sbjct: 217 IVIAGAPNSGKSSIMNRLAGRSVAIVTEEAGTTRDALEMRLVLGGLPIFLTDTAGFRKTE 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 + +L I ++ ++ AD+V LV D +V++ + EI + ++L L Sbjct: 277 NKIEQLGIEVAKQHVREADLVILVYDIVNPKQVDLPETSAEIWRVGNKLDL 327 >gi|122702669|emb|CAL88524.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRSISTLIDAILSALNL 168 >gi|122702839|emb|CAL88609.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702267|emb|CAL88324.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + L L Sbjct: 122 NKIDNNKE----KERSYAFSSFGVPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|122701403|emb|CAL88091.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLDL 168 >gi|66048357|ref|YP_238198.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae B728a] gi|81307750|sp|Q4ZL12|MNME_PSEU2 RecName: Full=tRNA modification GTPase mnmE gi|63259064|gb|AAY40160.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Pseudomonas syringae pv. syringae B728a] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ S++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|15925702|ref|NP_373236.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus Mu50] gi|156981027|ref|YP_001443286.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus Mu3] gi|255007483|ref|ZP_05146084.2| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus Mu50-omega] gi|21363015|sp|Q931E1|MNME_STAAM RecName: Full=tRNA modification GTPase mnmE gi|166234822|sp|A7X7A8|MNME_STAA1 RecName: Full=tRNA modification GTPase mnmE gi|14248487|dbj|BAB58874.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus Mu50] gi|156723162|dbj|BAF79579.1| possible thiophene and furan oxidation protein [Staphylococcus aureus subsp. aureus Mu3] Length = 459 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRSVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD++ V++++ L + L + + ++ +I+I+NK Sbjct: 279 IRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNK 336 Query: 140 IDC 142 +D Sbjct: 337 MDL 339 >gi|325265091|ref|ZP_08131818.1| ribosome-associated GTPase EngA [Clostridium sp. D5] gi|324029781|gb|EGB91069.1| ribosome-associated GTPase EngA [Clostridium sp. D5] Length = 442 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G +SIV TR + VS + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVSWLDREFTMIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 ++D M + I AD++ + D + L V+ + ++ +RS + +IL++NK+D Sbjct: 65 SRDVILSQMREQAQIAIDTADVIIFITDVKQGL-VDSDSKVADMLRRSGKPVILVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + I +SA G D+L+ + + P Sbjct: 124 NFD-KFMPDVYEFYN--LGIGDPVPISAASRLGLGDMLDEVTAHFP 166 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+++N+ +G IV+ TTR + + + +F+DT G+ Sbjct: 180 IAIVGKPNVGKSSIINKLLGENRVIVSDVAGTTRDAIDTEILHDGKEYIFIDTAGLRRKS 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +V+D+ + + +R +I+++NK D Sbjct: 240 RIKEELERYSIIRTVTAVERADVVLIVIDAEEGVTEQDAKIAGIAHERGKGIIIVVNKWD 299 Query: 142 CVK 144 V+ Sbjct: 300 AVE 302 >gi|122702447|emb|CAL88414.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALVDAILNALNL 168 >gi|21227149|ref|NP_633071.1| GTP-binding protein [Methanosarcina mazei Go1] gi|20905482|gb|AAM30743.1| GTP-binding protein [Methanosarcina mazei Go1] Length = 364 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S G V LVG + GKSTL+N+ GAK + ++ TT ++V G++ K + I FLD PG Sbjct: 60 SGDGTVTLVGFPSVGKSTLLNKVTGAKSEVGAYEF-TTLTVVPGVLEHKGATIQFLDVPG 118 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 + S + + S I+++D+V ++D Sbjct: 119 LVKGASS-GRGRGKEVISVIRNSDMVIFLLD 148 >gi|260062619|ref|YP_003195699.1| tRNA modification GTPase TrmE [Robiginitalea biformata HTCC2501] gi|88784186|gb|EAR15356.1| tRNA modification GTPase [Robiginitalea biformata HTCC2501] Length = 462 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 15/159 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ GA N GKSTL+N + + +IV+ TTR + + + F+DT GI + Sbjct: 223 VAIAGAPNVGKSTLLNALLREERAIVSEIAGTTRDAIEDEIVLEGIGFRFIDTAGIRETE 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKR--SSRLILILNK 139 D+ + IR ++ ++ A ++ +VD +H +L + ++ I +R +IL++NK Sbjct: 283 DTVEHIGIRKTFEKMEAARVIIYMVDGSRAHPDLLASWSAEIQSIRERHPDKPVILLVNK 342 Query: 140 IDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D + K + LE+A + + +SA G G + Sbjct: 343 TDRLDDKARKQLEEA--------LPEALGISARTGEGLE 373 >gi|319796642|ref|YP_004158282.1| tRNA modification GTPase trme [Variovorax paradoxus EPS] gi|315599105|gb|ADU40171.1| tRNA modification GTPase TrmE [Variovorax paradoxus EPS] Length = 469 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ VQ ++ G V + G NAGKS+L+N GA+++IV+ T Sbjct: 207 GQLARLQTQLAAVQQRAKQGALLREGIKVVIAGQPNAGKSSLLNALAGAELAIVSAVAGT 266 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 TR +V + + DT G+ + D ++ + +W I+ AD V + D R Sbjct: 267 TRDVVSQTIQIHGVPLHVADTAGLRESSDEVEQIGVARAWGQIESADAVLFLHDLTR 323 >gi|256820731|ref|YP_003142010.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea DSM 7271] gi|256582314|gb|ACU93449.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea DSM 7271] Length = 472 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKSTL+N + + +IV+ TTR + + F+DT GI + + Sbjct: 230 VAIVGKPNAGKSTLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQ 289 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D + ++ + I+ A IV + D I +KE + ++ +L+ NK D Sbjct: 290 DQIEAIGVQKAKEKIEKASIVLYLFDVKDSSAQEIISFVKENYREGTKFVLLHNKTD 346 >gi|269215192|ref|ZP_06159102.1| tRNA modification GTPase TrmE [Neisseria lactamica ATCC 23970] gi|269208082|gb|EEZ74537.1| tRNA modification GTPase TrmE [Neisseria lactamica ATCC 23970] Length = 536 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 7/137 (5%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G++ D V N++ G V LVGA N GKS+L+N G +V+IVT T Sbjct: 279 GKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGT 338 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 TR VR + + +DT G+ D ++ I S + AD+ ++VD L Sbjct: 339 TRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGLN 398 Query: 117 VNIHDLLKEIAKRSSRL 133 +L + R+ Sbjct: 399 EKTRAILDALPPELKRI 415 >gi|122700807|emb|CAL87992.1| GTPase [Helicobacter pylori] gi|122700837|emb|CAL88007.1| GTPase [Helicobacter pylori] gi|122702163|emb|CAL88272.1| GTPase [Helicobacter pylori] gi|122702469|emb|CAL88425.1| GTPase [Helicobacter pylori] gi|242255966|gb|ACS88967.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|17932845|emb|CAD11319.1| GTP-binding protein homologue [Helicobacter pylori] Length = 347 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 20/200 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV---YS 194 NKID K + E+A A I K+F +S + G +++ + + L L + Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGIPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLD 178 Query: 195 ADQISDLPMFHFTAEITREK 214 AD + L + E T+E+ Sbjct: 179 ADILESLETPNNALEETKEE 198 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|322824721|gb|EFZ30032.1| small GTP-binding protein, putative [Trypanosoma cruzi] Length = 450 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 12/142 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +ALVG TN+GKS+L+NR VG + S + +TR V K ++ +DT G+ Sbjct: 184 IALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELPCIYKGRKMKLIDTAGLTRNR 243 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 F A + + LS + I++A +V +V D+ E N +D+ L +A +L N Sbjct: 244 FRADRDFIGRIHDLSVNEIRYAHVVIVVFDA-TEGHPNKYDMAVLHSVAAEGRPFLLCAN 302 Query: 139 KIDCVKPERLLEQAEIANKLVF 160 K D V L+Q+ A + F Sbjct: 303 KWDAV-----LDQSATAEAIDF 319 >gi|291515475|emb|CBK64685.1| tRNA modification GTPase trmE [Alistipes shahii WAL 8301] Length = 451 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ GA N GKSTL+NR + + ++V+ TTR ++ + FLDT GI Sbjct: 221 AVAIAGAPNVGKSTLLNRLLNEERAMVSEIAGTTRDVIEECANIGGVLFRFLDTAGIRPT 280 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I+ + S+I+ A IV +VD+ Sbjct: 281 DDRLEQMGIQRTMSSIERARIVIHMVDA 308 >gi|289548080|ref|YP_003473068.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484] gi|289181697|gb|ADC88941.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484] Length = 450 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 17/157 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L N +G++ +IVT TTR ++ + I +DT GI Sbjct: 221 LAIVGKPNVGKSSLFNALLGSQRAIVTDIPGTTRDFLQEQWNIGGIPINLVDTAGIRTTT 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILILNKID 141 D ++ ++ S + A IV LVVD + L+ ++I+ ++K+ I++LNK D Sbjct: 281 DPVEQMGVQRSIEKLGSAHIVLLVVDGSKPLEEEDLSIYSMVKD-----KDHIVVLNKKD 335 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 E + A+ + V MVSA G G +D+ Sbjct: 336 LGVCE---DTAKAFPEFV------MVSAKTGDGLEDL 363 >gi|199598702|ref|ZP_03212116.1| GTP-binding protein EngA [Lactobacillus rhamnosus HN001] gi|229552181|ref|ZP_04440906.1| GTP-binding protein EngA [Lactobacillus rhamnosus LMS2-1] gi|258508385|ref|YP_003171136.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG] gi|258539596|ref|YP_003174095.1| GTP-binding protein EngA [Lactobacillus rhamnosus Lc 705] gi|199590390|gb|EDY98482.1| GTP-binding protein EngA [Lactobacillus rhamnosus HN001] gi|229314483|gb|EEN80456.1| GTP-binding protein EngA [Lactobacillus rhamnosus LMS2-1] gi|257148312|emb|CAR87285.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG] gi|257151272|emb|CAR90244.1| GTP-binding protein EngA [Lactobacillus rhamnosus Lc 705] gi|259649699|dbj|BAI41861.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG] Length = 435 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 12/168 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR +G +VSIV TR + G + +DT GI Sbjct: 5 TLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + + + I AD++ + ++ + D + +A+ R+++ ++L +NK Sbjct: 65 DEPFLAQIKDQAEIAIDEADVILFLT----SIEAGVTDADERVAQILYRANKPVVLAVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D PER + + + L F E +S T G G DVL+ + + P Sbjct: 121 VD--NPERRQDIYDFYS-LGFGEP-LPLSGTHGIGLGDVLDAVLAAFP 164 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D S +L+G N GKS+LVN +G IV+ TTR + +DT Sbjct: 170 DEDDSIKFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEADGETFTMIDT 229 Query: 78 PGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 GI Y K + + I +D+V V+++ ++ + + +I Sbjct: 230 AGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFVINAEEGIREQDKKVAGYAHEAGRGII 289 Query: 135 LILNKIDCVK 144 +++NK D ++ Sbjct: 290 IVVNKWDTLE 299 >gi|4467665|emb|CAB37784.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|297198669|ref|ZP_06916066.1| ribosome-associated GTPase EngA [Streptomyces sviceus ATCC 29083] gi|297147167|gb|EDY58617.2| ribosome-associated GTPase EngA [Streptomyces sviceus ATCC 29083] Length = 492 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 55 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 114 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ +++ + K ++L NK+D + Sbjct: 115 VLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLAANKVDGL 174 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E + A + + + + + VSA G G D+L+ + LP AP Sbjct: 175 SGES--DAAYLWS--LGLGEPHPVSALHGRGTGDMLDAVLEALPEAP 217 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+L+N+ G + +V TTR V ++ F+DT GI Sbjct: 231 IALIGRPNVGKSSLLNKVAGEERVVVNEMAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 290 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + A I ++D + V ++ + ++L N Sbjct: 291 HLQQGADYYASLRTAAAVEKAEVAVI---LIDGSESISVQDQRIVTMAVEAGRAIVLAYN 347 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 348 KWDTLDEER 356 >gi|296875953|ref|ZP_06900012.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 15912] gi|312868488|ref|ZP_07728688.1| ribosome biogenesis GTPase Der [Streptococcus parasanguinis F0405] gi|322390089|ref|ZP_08063624.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 903] gi|296433028|gb|EFH18816.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 15912] gi|311096233|gb|EFQ54477.1| ribosome biogenesis GTPase Der [Streptococcus parasanguinis F0405] gi|321143216|gb|EFX38659.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 903] Length = 436 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATAEWLNRKFSIIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++ + +IL +NK+D Sbjct: 65 DAPFMEQIKHQAEIAMDEADVIVFVV-SGKEGITDADEYVTRILYKTHKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + +I + + + VS+ G G DVL+ + LP Sbjct: 123 -NPEM---RNDIYDFYALGLGEPLPVSSVHGIGTGDVLDAIIENLP 164 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G I + TTR + ++ + Q +DT G+ + Sbjct: 178 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +D+V +V+++ RE I E K +I+++N Sbjct: 238 KIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGK---GMIIVVN 294 Query: 139 KIDCVK 144 K D ++ Sbjct: 295 KWDTIE 300 >gi|292806670|gb|ADE42465.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|253999419|ref|YP_003051482.1| GTP-binding protein EngA [Methylovorus sp. SIP3-4] gi|313201441|ref|YP_004040099.1| small GTP-binding protein [Methylovorus sp. MP688] gi|253986098|gb|ACT50955.1| small GTP-binding protein [Methylovorus sp. SIP3-4] gi|312440757|gb|ADQ84863.1| small GTP-binding protein [Methylovorus sp. MP688] Length = 523 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 6/188 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D SR+ VA+VG N GKSTLVN +G + I + TTR + + +DT Sbjct: 173 DGSRTPKVAIVGRPNVGKSTLVNALLGQERVIAFDQPGTTRDSIHIDLERNGKHYTIIDT 232 Query: 78 PGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + I+ A++ LVVD+ + + I + L+ Sbjct: 233 AGVRKRGKVFEAIEKFSVIKTIQAIEEANVAILVVDAQEGITEQDAHVAAYILEAGRALV 292 Query: 135 LILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + +NK D +K ER + EI KL F++ K +SA + G ++ + A Sbjct: 293 VAINKWDGLKEDERDWIKREIDRKLQFLDFAKFHYISALRKKGLPELFTSVDGAYKAAMA 352 Query: 192 VYSADQIS 199 S Q++ Sbjct: 353 KLSTPQLT 360 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 9/159 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 + LVG N GKSTL NR ++ ++V TR RGI +K + +DT G Sbjct: 4 TIVLVGRPNVGKSTLFNRLTKSRDALVADLPGLTRDRHYGRGIGGDKP--FLVVDTGGFE 61 Query: 82 NAKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 DS K M + + I AD+V +VD L + + K ++L +NK Sbjct: 62 PLVDSGILKEMAKQTLLAIDEADVVIFMVDGRNGLAPQDKVIADRLRKSQRPVLLAVNKT 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + + +R + AE + + +S+ G G D++ Sbjct: 122 EGM--QRAIVSAEFHE--LGLGDPLSISSAHGEGVRDLV 156 >gi|51246791|ref|YP_066675.1| GTP-binding protein (EngA) [Desulfotalea psychrophila LSv54] gi|50877828|emb|CAG37668.1| Probable GTP-binding protein (EngA) [Desulfotalea psychrophila LSv54] Length = 446 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA G N GKS+++NR +G IV+ TTR V +++ + +DT GI Sbjct: 184 VAFFGRPNVGKSSMINRILGEDRMIVSEISGTTRDSVDTLLTHGNYSYLLIDTAGIRRKG 243 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + KL I S ++ D+ +++D+ + ++ + LI+++NK D Sbjct: 244 KTTEKLEKFSILKSLGALERCDVAVILIDADEGITEQDTKVIGYALDQGRGLIILVNKWD 303 Query: 142 CVKPERLLEQ---AEIANKLVFI--EKTFMVSATKGHG 174 ++ ++ + AE+ +L FI VSA G G Sbjct: 304 LLEGDKKRQDEVLAEVGRQLPFIGFAPLLTVSALSGFG 341 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 6/170 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 NS VALVG N GKSTL NR ++ ++V TR V ++ +DT Sbjct: 3 NSSCPIVALVGRPNVGKSTLFNRITKSRNALVDPTPGVTRDRQYERVVWNNRAMILVDTG 62 Query: 79 GIFNAKDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL-I 136 GI + + IR + + I+ ADIV ++D L ++++ +I +R+ + + + Sbjct: 63 GIDDNPEDVLVPHIRDQALAAIEEADIVLFLMDGREGLTPADYEVV-DILRRAKKPVYHV 121 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +NKID PE+ LE +L +E + +SA G + +++ L T+ Sbjct: 122 INKIDG--PEKELELLCPFYEL-GVETLWSLSADHTFGFNTLMDALSETI 168 >gi|332883522|gb|EGK03805.1| GTP-binding protein engA [Dysgonomonas mossii DSM 22836] Length = 468 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 7/171 (4%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 VQ + VA+VG N GKSTL NR ++ +IV TTR G V + Sbjct: 27 VQYTNMGNLVAIVGRPNVGKSTLFNRLTESRQAIVDETSGTTRDRQYGKVEWGGQDFSLV 86 Query: 76 DTPG-IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DT G + N++D + + + I+ AD++ +VD L ++ + + +RS + I Sbjct: 87 DTGGWVVNSEDVFENEINKQVAIAIEEADVILFMVDVMNGL-TDLDSSVANMLRRSKKPI 145 Query: 135 LIL-NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 L++ NK D L + + +SA G G D+L+ + + Sbjct: 146 LLVSNKADNFN----LHAQSAEFYALGLGDPINISAINGSGTGDLLDVIIT 192 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 5/129 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A+VG NAGKS+LVN + + +IVT+ TTR + + +DT GI Sbjct: 209 IAIVGRPNAGKSSLVNALMDEERNIVTNIAGTTRDSIYTRFDKFNLDFYLVDTAGIRKKG 268 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D + +IR S I+++D+ L++D+ + ++ ++ I K L++ +NK Sbjct: 269 KVTEDLEYYSVIR-SIKAIENSDVCVLMIDATQGIESQDMNIFSLIQKNRKGLVVCVNKW 327 Query: 141 DCVKPERLL 149 D V+ + L+ Sbjct: 328 DLVENKELI 336 >gi|330890255|gb|EGH22916.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. mori str. 301020] Length = 456 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ S++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|325926224|ref|ZP_08187582.1| tRNA modification GTPase trmE [Xanthomonas perforans 91-118] gi|325543406|gb|EGD14831.1| tRNA modification GTPase trmE [Xanthomonas perforans 91-118] Length = 446 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 14/168 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + +R + + ++ AD+ +V+D+ R+ + D + + R + I NK D Sbjct: 281 IEREGMRRARAELERADLALVVLDA-RDPQA-ARDAIGDAVDAVPRQLWIHNKCDL---- 334 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 + N VSA G G + L+ L L V S Sbjct: 335 -------LGNAASLDANAIAVSAVTGQGLEQ-LHIRLRALALGDGVDS 374 >gi|260770600|ref|ZP_05879532.1| GTP-binding protein HflX [Vibrio furnissii CIP 102972] gi|260614430|gb|EEX39617.1| GTP-binding protein HflX [Vibrio furnissii CIP 102972] gi|315178343|gb|ADT85257.1| GTP-binding protein HflX [Vibrio furnissii NCTC 11218] Length = 429 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 73/169 (43%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TVSLVGYTNAGKSTLFNRITSAGVYAADQLFATLDPTLRKIDLADVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRE-LKVNIH---DLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ E + NI D+L EI +L++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVDDVLLEIEANEVPTLLVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ +Q I + + VSA G G D + L L Sbjct: 317 NKIDNLEG----QQPRIERDDEGVPRAVWVSAMDGLGIDLLFAALTERL 361 >gi|92114975|ref|YP_574903.1| small GTP-binding protein protein [Chromohalobacter salexigens DSM 3043] gi|123387342|sp|Q1QTK4|DER_CHRSD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91798065|gb|ABE60204.1| Small GTP-binding protein protein [Chromohalobacter salexigens DSM 3043] Length = 467 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 6/181 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 + ++G N GKSTLVNR +G +V + TTR + + V +DT G+ Sbjct: 180 IGVIGRPNVGKSTLVNRLLGEDRVVVYDEAGTTRDAIEIPFERRGKPYVLVDTAGVRRRK 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N ++ K I + IK ++ +V+D+ L LL + L+L +NK D Sbjct: 240 NVSEAAEKFSIIKTLEAIKACNVAIMVLDARSGLVEQDLHLLDYVLSSGRALVLAVNKWD 299 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFM--VSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ++ E + +A I +L F + M +SA G D+ + A +S +++ Sbjct: 300 GLEQEAKDKMRAAIKRRLGFADYAEMHFISALHGTAVGDLYPSITRAFDSANSHWSTNRL 359 Query: 199 S 199 + Sbjct: 360 T 360 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 +ALVG N GKSTL NR + ++V TR G++ +K ++ DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGNGVLGDKTYTVI--DTGGIS 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ M S I ADIV +VD L V + + + L++NK D Sbjct: 62 GNEEGLDAAMAEQSLLAIDEADIVLFMVDGRTGLNVADEAIANHLRVNQKKTWLVVNKTD 121 Query: 142 CVK 144 ++ Sbjct: 122 GLE 124 >gi|260427894|ref|ZP_05781873.1| GTP-binding protein HflX [Citreicella sp. SE45] gi|260422386|gb|EEX15637.1| GTP-binding protein HflX [Citreicella sp. SE45] Length = 417 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 8/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + +++ DT G + Sbjct: 198 IVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRAVRLPTGIEVILSDTVGFISD 257 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIA-KRSSRLILILN 138 + R + + AD+V V D SH E ++ +L + I + N Sbjct: 258 LPTELVAAFRATLEEVLAADVVVHVRDISHPNTEEQSEDVETILASLGLDEEVPRIEVWN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID + P+ E+ + + E+ + VSA G G D +L + L Sbjct: 318 KIDRLHPD---ERDALLTRAEREEQVYAVSALTGDGLDVMLRAVTDLL 362 >gi|225352117|ref|ZP_03743140.1| hypothetical protein BIFPSEUDO_03732 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157364|gb|EEG70703.1| hypothetical protein BIFPSEUDO_03732 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 709 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 9/180 (5%) Query: 15 FVQDNSRSG-----CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 FV RSG +A+VG N GKSTLVNR +G + ++V TR V Sbjct: 260 FVGGERRSGPKPVGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAG 319 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 + +DT G + + + ++ AD V LVVD L ++K + Sbjct: 320 TDFKLVDTGGWEADVEGIESAIASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRAS 379 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + L +NK+D + E L AE + + + + +SA G G ++L+ +L A Sbjct: 380 GKPVTLAVNKVDDRESEYL--TAEFWK--MGLGEPYGISAMHGRGIGELLDAALDSLKKA 435 Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V +V+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ D+ + + ++ + ++L+ N Sbjct: 507 RRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDLM 571 >gi|254525316|ref|ZP_05137371.1| tRNA modification GTPase TrmE [Stenotrophomonas sp. SKA14] gi|219722907|gb|EED41432.1| tRNA modification GTPase TrmE [Stenotrophomonas sp. SKA14] Length = 449 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 48/85 (56%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G++ +IVT TTR +R + ++ +DT G+ + D+ Sbjct: 223 LIGPPNAGKSSLLNALAGSERAIVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDA 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDS 111 + +R + I+ D+ +V+D+ Sbjct: 283 IEREGMRRAHVEIERTDLALIVLDA 307 >gi|194367813|ref|YP_002030423.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia R551-3] gi|194350617|gb|ACF53740.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia R551-3] Length = 449 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 48/85 (56%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G++ +IVT TTR +R + ++ +DT G+ + D+ Sbjct: 223 LIGPPNAGKSSLLNALAGSERAIVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDA 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDS 111 + +R + I+ D+ +V+D+ Sbjct: 283 IEREGMRRAHVEIERTDLALIVLDA 307 >gi|242255948|gb|ACS88958.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|225570488|ref|ZP_03779513.1| hypothetical protein CLOHYLEM_06589 [Clostridium hylemonae DSM 15053] gi|225160685|gb|EEG73304.1| hypothetical protein CLOHYLEM_06589 [Clostridium hylemonae DSM 15053] Length = 442 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + VS + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYAEVSWLDKEFTLIDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SKDVILSQMREQAQIAIDTADVIVFITDVRQGL-VDSDSKVADMLRRSGKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + I VSA G D+L + P Sbjct: 124 SFD-KFMPDVYEFYN--LGIGDPVPVSAASRLGIGDMLERVAQFFP 166 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS++VN+ +G + IV+ TTR + + + VF+DT G+ Sbjct: 180 IAIVGKPNVGKSSIVNKLLGEQRVIVSDVAGTTRDAIDTEIIHGGREYVFIDTAGLRRKS 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +V+D+ + + +R +I+++NK D Sbjct: 240 KIKEELERYSIIRTVTAVERADVVLVVIDAAEGVTEQDAKIAGIAHERGKGIIIVVNKWD 299 Query: 142 CVK 144 ++ Sbjct: 300 AIE 302 >gi|122701335|emb|CAL88057.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VV+ S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVNGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALNL 168 >gi|313901830|ref|ZP_07835252.1| ribosome-associated GTPase EngA [Thermaerobacter subterraneus DSM 13965] gi|313467912|gb|EFR63404.1| ribosome-associated GTPase EngA [Thermaerobacter subterraneus DSM 13965] Length = 454 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 8/177 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR + +++I TR + + +DT G+ Sbjct: 4 VVAIVGRPNVGKSTLFNRIIERRLAIEDDVPGVTRDRLYADTDWAGREFTLVDTGGLAEG 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + R + ++ AD++ +VVD + ++ + + + IL +NK+D Sbjct: 64 DDPLTVQVRRQVEAAVREADLLIMVVDGQAGVTPADEEVARLLRQSRKPTILAVNKVDDA 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + + + + + V+A G D+L+ + LP P AD+ D Sbjct: 124 R----WDGVQYDFFRLGLGEPIPVAAGPGRNVGDLLDAVVRGLPAPP----ADEPGD 172 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 12/172 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--- 80 VA+VG N GKS+LVNR +G + +V+ TTR V + E F+DT G+ Sbjct: 186 AVAIVGRPNVGKSSLVNRLLGEERVVVSDIPGTTRDAVDVLWRRGERVFRFIDTAGLRRK 245 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 KD + + AD+ CLV+D+ + I + +L +NK Sbjct: 246 SRVKDDVEFYSTLRTQRALARADVACLVLDARDPATEQDKRIAGMILEEGKACVLAVNKW 305 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFM-------VSATKGHGCDDVLNYLCST 185 D V + + A+ + ++ E F+ +SA G D ++ L Sbjct: 306 DLVA--KGPDTADQYREALYREYDFLQFAPVVFLSALTGQRVDRLVEVLAGA 355 >gi|292806642|gb|ADE42451.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NK+D K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKVDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122700805|emb|CAL87991.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|194365250|ref|YP_002027860.1| GTP-binding proten HflX [Stenotrophomonas maltophilia R551-3] gi|194348054|gb|ACF51177.1| GTP-binding proten HflX [Stenotrophomonas maltophilia R551-3] Length = 436 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL N GA+ T VR I +V DT G + Sbjct: 200 VALVGYTNAGKSTLFNAMTGAEAYAADQLFATLDPTVRRIAVPG-GNVVLADTVGFV--R 256 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSSRLILILN 138 D H L+ R + S + AD + VVD+ HRE ++ + ++L + +L+ N Sbjct: 257 DLPHDLVAAFRSTLSEAREADFLLHVVDAADPHREERIAQVDEVLTAVGAGDLPQLLVFN 316 Query: 139 KIDCVK 144 KID ++ Sbjct: 317 KIDRIE 322 >gi|303249031|ref|ZP_07335275.1| GTP-binding proten HflX [Desulfovibrio fructosovorans JJ] gi|302489554|gb|EFL49495.1| GTP-binding proten HflX [Desulfovibrio fructosovorans JJ] Length = 554 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 10/172 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+LVG TNAGKSTL+N G+ V T R + + +I+ DT G Sbjct: 369 VSLVGYTNAGKSTLLNTLTGSAVLAENRLFATLDPTSRRLRFPCDREIILTDTVGFIREL 428 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIAKRSSRLILILNKI 140 K R + ++ AD++ V D SH E++ + ++L+E+ I +LNK Sbjct: 429 PKELKEAFRATLEELEAADLLVAVADASHPEVENQATAVAEILREMGLGDIPRIFVLNKW 488 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 D V PE L + + N F E VSA G D+ + + S + P V Sbjct: 489 DAV-PEDL--RGSLKN--CFPE-AITVSARSREGLGDLTDAILSKVRPGPGV 534 >gi|292806618|gb|ADE42439.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|260887890|ref|ZP_05899153.1| GTP-binding protein [Selenomonas sputigena ATCC 35185] gi|330838754|ref|YP_004413334.1| small GTP-binding protein [Selenomonas sputigena ATCC 35185] gi|260862396|gb|EEX76896.1| GTP-binding protein [Selenomonas sputigena ATCC 35185] gi|329746518|gb|AEB99874.1| small GTP-binding protein [Selenomonas sputigena ATCC 35185] Length = 399 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 13/177 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + G NAGKS+L+N G +V++V+ K TT + + + ++ +DTPG F+ Sbjct: 14 IGFFGRRNAGKSSLINAITGQEVAVVSPEKGTTTDPVAKAMELLPLGPVLLIDTPG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L ++ + + DI LV+D+ + +L++ ++ +++ NK + Sbjct: 73 TGDLGELRVKRTRRILNKTDIAVLVLDAAEGMTAVDEELMQIFREKDIPHLIVCNKCEDE 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL-APWVYSADQIS 199 KP + N E+ F VSA K G +++ L +P P + D +S Sbjct: 133 KPP-----SSAGN-----ERIFHVSALKKLGINELKERLSQIMPQEKPRAFVRDLLS 179 >gi|238021706|ref|ZP_04602132.1| hypothetical protein GCWU000324_01609 [Kingella oralis ATCC 51147] gi|237866320|gb|EEP67362.1| hypothetical protein GCWU000324_01609 [Kingella oralis ATCC 51147] Length = 489 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 8/183 (4%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-I 72 D Q ++ A++G N GKSTLVN +G + I TTR + I E+E + Sbjct: 167 DETQPENKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPF 225 Query: 73 VFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 +DT G+ ++ K + + I+ A+I LV+D+ +++ + + Sbjct: 226 TIIDTAGVRRRGKVDEAVEKFSVIKAMQAIEAANIAVLVLDAQQDIADQDATIAGFALEA 285 Query: 130 SSRLILILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 L++ +NK D + ER + + +IA KL F++ K +SA K G D + + + + Sbjct: 286 GRALVIAVNKWDGISEERRNDIKRDIARKLYFLDFAKFHYISALKERGIDGLFDSIQAAY 345 Query: 187 PLA 189 A Sbjct: 346 NAA 348 Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD+ L Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDARTGL 96 >gi|122700871|emb|CAL88024.1| GTPase [Helicobacter pylori] gi|122701701|emb|CAL88240.1| GTPase [Helicobacter pylori] gi|122701719|emb|CAL88249.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|114771148|ref|ZP_01448588.1| GTP-binding protein HflX [alpha proteobacterium HTCC2255] gi|114548430|gb|EAU51316.1| GTP-binding protein HflX [alpha proteobacterium HTCC2255] Length = 417 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 10/170 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N GAKV T +R + +I+ DT G + Sbjct: 196 IVALVGYTNAGKSTLFNYMTGAKVFAKDMLFATLDPTMREVELPSGQKIILSDTVGFISE 255 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKV---NIHDLLKEI---AKRSSRLILI 136 + R + + A+++ V D SH E + +++D+L+E+ S ++ + Sbjct: 256 LPTQLIAAFRATLEEVLDANLILHVRDISHPETEAQANDVNDILEELDVSDNTKSNILEV 315 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D + + L+ I+++ EK VSA G G +L+ + L Sbjct: 316 WNKTDLLSNDELINAKNISDR---SEKIRTVSALTGDGLSVLLSEIDENL 362 >gi|317453535|emb|CBL87877.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSVPSDEDIKLFREVFKTNPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER+ + + K+F +S + G +++ + L L Sbjct: 127 DKEKERVYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|260072547|gb|ACX30447.1| Era/TrmE family GTP-binding protein [uncultured SUP05 cluster bacterium] gi|269468505|gb|EEZ80163.1| GTPase [uncultured SUP05 cluster bacterium] Length = 469 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 20/165 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFN 82 VA++G N GKSTL+NR +G + + TTR + I E+E Q +DT GI Sbjct: 180 AVAVLGRPNVGKSTLINRILGEERVLAIDMPGTTRDSIY-IPFEREGQKYTLIDTAGIRR 238 Query: 83 AKDSYHKLMIRLSWSTIKHAD------IVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + ++ K+ I +S IK D +V LV+D+ + LL IA + L+++ Sbjct: 239 KRSTHEKIEI---FSIIKAIDALDRSHVVILVLDAREGVTEQDATLLGMIADKGRALLIV 295 Query: 137 LNKIDCVKPERLLEQAEIANKL------VFIEKTFMVSATKGHGC 175 +NK D + +++E+ KL V +SA G G Sbjct: 296 INKWDGLDD---YQKSEVKRKLDVKLSFVNYASVHYISALHGSGV 337 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG-IVSEKESQ--IVFLDTPGI 80 ++LVG N GKSTL NR ++ ++V+ TR I+ + +SQ + +DT G+ Sbjct: 5 VISLVGRPNVGKSTLFNRLSNSRQALVSDFEGLTRDRQYAEILLDDDSQTFVTIIDTGGL 64 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL----ILI 136 + + + ++ +D++ +V S R+ + + DL EIA + RL IL+ Sbjct: 65 TGDDNIVDSGIQGQVLNALEESDVIYFIV-SARDGVIGL-DL--EIASQLRRLKKDIILV 120 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK + + E E+ + + ++SA G D++++ TLPL P Sbjct: 121 CNKAEGLDESLAAEFYELG-----LGEPRLISAEHSQGIGDLIDH---TLPLLP 166 >gi|228990617|ref|ZP_04150582.1| GTP-binding protein engA [Bacillus pseudomycoides DSM 12442] gi|228996716|ref|ZP_04156353.1| GTP-binding protein engA [Bacillus mycoides Rock3-17] gi|228763035|gb|EEM11945.1| GTP-binding protein engA [Bacillus mycoides Rock3-17] gi|228769143|gb|EEM17741.1| GTP-binding protein engA [Bacillus pseudomycoides DSM 12442] Length = 436 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPVVLAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + + L F E F +S T G G D+L+ P Sbjct: 123 NPEMRNDIYDFY-ALGFGEP-FPISGTHGLGLGDLLDEAAKHFP 164 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +I+++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 AVK 300 >gi|122702137|emb|CAL88259.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINHNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILRALDL 168 >gi|118602251|ref|YP_903466.1| small GTP-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567190|gb|ABL01995.1| GTP-binding protein HflX [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 441 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 8/125 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL G TNAGKSTL N A+V T S +R ++ + +DT G + Sbjct: 207 IALAGYTNAGKSTLFNVLTNAEVFANDQLFATLNSTIRRVILPASGEAAIVDTVGFI--Q 264 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILILN 138 D H L+ + + K A+++ +VD+ E + + D++ EI + IL++N Sbjct: 265 DLPHDLVDAFKSTLEETKCANVLLHIVDAADEYNIEKIAQVEDIIFEIGASNIPSILVMN 324 Query: 139 KIDCV 143 KIDC+ Sbjct: 325 KIDCL 329 >gi|110004318|emb|CAK98656.1| putative gtp-binding protein enga [Spiroplasma citri] Length = 438 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 8/175 (4%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 ++ G VA+VG N GKSTL NR + +++IV TR + + + +DT G Sbjct: 2 AQKGTVAIVGRPNVGKSTLFNRIIKNRLAIVEDTPGVTRDRIYAFSEWLTREFLIIDTGG 61 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILN 138 I + I++ + + V S++E +++ +I RS + ++L++N Sbjct: 62 ITLNNTAMFAQEIKMQAEIAIAEADIIIFVLSYKEGITPDDEMVAKILYRSKKPVLLVIN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL---PLAP 190 K D K E+ E E L F E VSAT G G D+L+ + S L P+ P Sbjct: 122 KYD--KQEKESELFEYMT-LGFGE-PIAVSATHGIGIGDLLDQVISYLDQIPIQP 172 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 13/147 (8%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +Q + +L+G N GKS+L N +G + IV+ TT + + Sbjct: 170 IQPKTEGIHFSLIGKPNVGKSSLTNAILGEERVIVSPIAGTTTDSIDTSFKRNNQLYTVI 229 Query: 76 DTPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----K 128 DT GI Y KL + + S IK +D+V L++D V I D IA + Sbjct: 230 DTAGIRRKGKVYEKLEKYSVLRAVSAIKRSDLVLLIIDG----TVPITDQDTNIAGITFE 285 Query: 129 RSSRLILILNKIDCV--KPERLLEQAE 153 ++ +IL++NK D V K ER +++ E Sbjct: 286 QNKPIILVVNKWDAVMEKDERSMKKIE 312 >gi|256545276|ref|ZP_05472641.1| GTPase [Anaerococcus vaginalis ATCC 51170] gi|256399103|gb|EEU12715.1| GTPase [Anaerococcus vaginalis ATCC 51170] Length = 380 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 7/141 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIV-THKVQTTRSIVRGIVSEKESQIVFLDT 77 NS + L+G TN+GKS+ +N VSIV + K TT I + + ++F DT Sbjct: 5 NSERFSLVLLGKTNSGKSSFLNYITDQDVSIVSSQKGTTTDPIKKSMEIHDFGPVLFFDT 64 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 G + + Y K I + TI+ AD++ + EL +D+ K + K +I I Sbjct: 65 AGFDDDTNLYEK-RIEKTKKTIEKADLILYFLSMEDEL----NDIFK-LKKEYKNIIFIA 118 Query: 138 NKIDCVKPERLLEQAEIANKL 158 +K D E++ E+ E N L Sbjct: 119 SKQDLDIGEKIFEKFESINPL 139 >gi|160946598|ref|ZP_02093801.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270] gi|158446982|gb|EDP23977.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270] Length = 468 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 7/150 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+++G N GKS+L+NR + + +IVT TTR +++ + ++ DT GI + Sbjct: 234 VSIIGKPNVGKSSLLNRILRQERAIVTDIAGTTRDLIKEDIELSGIKLNINDTAGIRDTA 293 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K+ ++ S +++D+ ++ D REL ++ +++ I ILNK+D K Sbjct: 294 DVVEKIGVQKSIEASENSDLNLVLFDISRELDEEDEKIIN--LANTTKSIGILNKVDLDK 351 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHG 174 L + ++ K+ F + +SA K G Sbjct: 352 K---LNEEKLKEKVNF--ELIEISALKNEG 376 >gi|254362978|ref|ZP_04979042.1| possible GTP-binding protein [Mannheimia haemolytica PHL213] gi|153094634|gb|EDN75438.1| possible GTP-binding protein [Mannheimia haemolytica PHL213] Length = 511 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR +G + +V TTR + + Q +DT G+ Sbjct: 225 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 284 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + I+ A++V L +++ + LL I L++++NK D Sbjct: 285 KVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSLLGFILNAGRSLVIVVNKWD 344 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 345 GLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACAT 396 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|122702123|emb|CAL88252.1| GTPase [Helicobacter pylori] gi|122702555|emb|CAL88467.1| GTPase [Helicobacter pylori] Length = 170 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|260438009|ref|ZP_05791825.1| GTP-binding protein HflX [Butyrivibrio crossotus DSM 2876] gi|292809489|gb|EFF68694.1| GTP-binding protein HflX [Butyrivibrio crossotus DSM 2876] Length = 411 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 31/182 (17%) Query: 12 HKDFVQDN-SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 H++ + SRS VA+VG TNAGKSTL+N GA + T RG+ E Sbjct: 185 HRELTRSQRSRSNIPVVAIVGYTNAGKSTLLNTLTGAGILAENKLFATLDPTTRGLELES 244 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK---HADIVCLVVDSHR-----ELKVNIH 120 QI+ DT G F +K +H ++ ST++ +ADI+ VVD+ ++ V ++ Sbjct: 245 GQQILLTDTVG-FISKLPHH--LVEAFKSTLEEAVYADIILHVVDASNPAMDSQMYV-VY 300 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVF----IEKTFMVSATKGHGCD 176 D L+++ +I NKI EIA V +KT +SA G G Sbjct: 301 DTLEKLGAGDKPIITAFNKI------------EIAGNKVLKDFKADKTVNISALHGDGLT 348 Query: 177 DV 178 ++ Sbjct: 349 EL 350 >gi|152993507|ref|YP_001359228.1| GTP-binding protein EngA [Sulfurovum sp. NBC37-1] gi|151425368|dbj|BAF72871.1| GTP-binding protein, Era/ThdF family [Sulfurovum sp. NBC37-1] Length = 467 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 13/170 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKS+L+N +G + S+V+ TT + + + +I F+DT GI Sbjct: 204 SVAIIGRVNTGKSSLLNALLGEERSVVSDVAGTTIDPIDETIEHNDYEITFVDTAGIRKR 263 Query: 84 KD--SYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 K + + + ++ ADI L++D+ EL + L+++ R S LI+I N Sbjct: 264 SKIVGIEKYALGRTEAMLEKADIALLIIDATVGVTELDERVAGLIEKF--RLSALIVI-N 320 Query: 139 KIDCVKPERLLEQA--EIANKLVFIEKT--FMVSATKGHGCDDVLNYLCS 184 K D ++ E+ E+A +I ++L F+ +SA G + +L+ + + Sbjct: 321 KWD-IRGEKTYEEAVDDIRDELKFLHYAPLITISAKTGMRVNKILDQITA 369 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 8/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 VA++G N GKS+L NR + +I + TTR I + +V+ + +DT GI + Sbjct: 9 VAILGRPNVGKSSLFNRLARQRDAITSDVSGTTRDIKKRLVTISGNREFEVIDTGGIDYS 68 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + K+ S AD++ +VD +L ++ L L++NKID Sbjct: 69 SELFSKVA-DFSLKAADMADVIIYMVDGKTLPDEEDRELFYKLQALGKPLALVVNKIDND 127 Query: 144 K-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K ER E E + TF +S + +D +L +P Sbjct: 128 KEEERYWEFLEFG-----ADATFPMSVSHNRYFNDFYAWLEQYIP 167 >gi|122702751|emb|CAL88565.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDSILRALNL 168 >gi|122702703|emb|CAL88541.1| GTPase [Helicobacter pylori] gi|292806446|gb|ADE42353.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILRVLNL 168 >gi|113954294|ref|YP_729814.1| GTP-binding protein EngA [Synechococcus sp. CC9311] gi|123031842|sp|Q0ICK8|DER_SYNS3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|113881645|gb|ABI46603.1| GTP-binding protein EngA [Synechococcus sp. CC9311] Length = 455 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G ++E ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR S + A + ++VD + L + + + ++ + +L +NK Sbjct: 64 DDDSEFLPEIREQASLALAEASVALVIVDGQQGLTAADESIAEWLRTQNCKTLLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C PE+ L A +L E +SA G G ++L+ + + LP Sbjct: 122 CESPEQGLGMAAEFWRLGLGEP-HPISAIHGAGTAELLDQVLTFLP 166 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 8/185 (4%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 + ++ F KD D ++++G N GKS+L+N G +IV+ TTR + Sbjct: 158 LDQVLTFLPPKDEESDEEEPIQLSIIGRPNVGKSSLLNSICGETRAIVSPIRGTTRDTID 217 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 + + + +DT GI + + I S+ I+ +D+ LV+D+ + Sbjct: 218 TRIERENRRWRLIDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHG 174 L I + ++++NK D V+ + A E+ KL F++ M+ SA G Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDAVEKDSHTMTAMEKELRAKLYFLDWAPMLFTSALTGQR 337 Query: 175 CDDVL 179 D + Sbjct: 338 VDSIF 342 >gi|71908592|ref|YP_286179.1| GTP-binding protein, HSR1-related [Dechloromonas aromatica RCB] gi|71848213|gb|AAZ47709.1| GTP-binding protein HflX [Dechloromonas aromatica RCB] Length = 384 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 19/162 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-- 81 V+LVG TNAGKSTL N A V T + R + E IV DT G Sbjct: 199 SVSLVGYTNAGKSTLFNALTHAGVYAADKLFATLDTTSRKLWIEGAGNIVISDTVGFIRN 258 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRLI 134 + D++H + ADI+ VVDS E + ++ +L+EI + R + Sbjct: 259 LPHSLVDAFHATL-----EAATDADILLHVVDSASHARDEQMIEVNKVLQEIGADAVRQV 313 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + NKID +E+ E N I + VSA G G D Sbjct: 314 IAWNKIDLTDASPGVERDEYGN----IAR-VRVSARSGEGLD 350 >gi|88809840|ref|ZP_01125346.1| tRNA modification GTPase [Synechococcus sp. WH 7805] gi|88786224|gb|EAR17385.1| tRNA modification GTPase [Synechococcus sp. WH 7805] Length = 460 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 46/86 (53%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+NR + +IVT TTR ++ + + I LDT GI Sbjct: 229 VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRATT 288 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 D+ +L I S + AD+V L+ D Sbjct: 289 DAVEQLGIARSHDALASADLVLLLFD 314 >gi|313205615|ref|YP_004044792.1| tRNA modification GTPase trme [Riemerella anatipestifer DSM 15868] gi|312444931|gb|ADQ81286.1| tRNA modification GTPase trmE [Riemerella anatipestifer DSM 15868] gi|325334957|gb|ADZ11231.1| Predicted GTPase [Riemerella anatipestifer RA-GD] Length = 463 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G NAGKSTL+N + + +IV+ TTR + ++ F+DT GI + Sbjct: 221 VAIIGKPNAGKSTLLNALLKEERAIVSDIAGTTRDTIEEVLHIGGHAFRFIDTAGIRDTA 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + + + I ADI+ + D I + + + + ++IL+ NKID Sbjct: 281 DRVESIGVEKAKEKINTADILLYLFDIKDSTPNEIINFITSLERPDLKVILLQNKIDS 338 >gi|302185835|ref|ZP_07262508.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae 642] Length = 456 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ S++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|299473466|emb|CBN77863.1| PEngA, plastid EngA GTPase [Ectocarpus siliculosus] Length = 680 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 VA+VG N GKS+L+NR G SIV+ TTR + + +DT GI Sbjct: 400 VAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKG 459 Query: 84 KDSYHK--LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K Y M+ ++ I+ AD+V L+VD + L I +++ NK D Sbjct: 460 KVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRIQSDGRACVVVCNKWD 519 Query: 142 CVK 144 V+ Sbjct: 520 LVE 522 >gi|294665117|ref|ZP_06730420.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605118|gb|EFF48466.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 446 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 14/170 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G++ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + +R + ++ AD+ +V+D+ R+ + D + + R + I NK D Sbjct: 281 IEREGMRRARVELERADLALVVLDA-RDPQA-ARDAIGDAIDAVPRQLWIHNKCDL---- 334 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + N VSA G G + L+ L L V S D Sbjct: 335 -------LGNAASLDANAIAVSAVTGQGLEQ-LHIRLRALALGDGVDSVD 376 >gi|288573317|ref|ZP_06391674.1| tRNA modification GTPase TrmE [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569058|gb|EFC90615.1| tRNA modification GTPase TrmE [Dethiosulfovibrio peptidovorans DSM 11002] Length = 456 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 7/155 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VALVG N GKS+L+N + +IVT TTR ++ + + K + +DT G+ Sbjct: 222 VALVGRPNVGKSSLLNALLRESRAIVTSIPGTTRDVIEEVFTHKGIPLRLMDTAGLRETP 281 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + I + I +D+V ++D L++ L ++++ + I+ LNK D Sbjct: 282 SDEVEAMGIERTAKAIDESDVVLWILDGSEPLEIPDRPLTEKLSGKPH--IVALNKSDLP 339 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 K ++ +IA KL+ +SA + G D++ Sbjct: 340 KA---FDETDIA-KLLPESWVIRISAQEKRGLDEL 370 >gi|219130091|ref|XP_002185207.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403386|gb|EEC43339.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 415 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 12/169 (7%) Query: 21 RSGC--VALVGATNAGKSTLVNRFVGAKV---SIVTHKVQTTRSIVRGIVSEKESQIVFL 75 R+G ++LVG TNAGKS+++N A V S++ + T V+ + +++ Sbjct: 190 RTGLPILSLVGYTNAGKSSMLNYLTKAGVMAESMLFATLDPTTRKVKLPGYKTHPEVLLT 249 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSS 131 DT G ++ R + ++ AD++ V+D + R+ + ++ +L +I Sbjct: 250 DTVGFIQKLPTHLVAAFRATLEEVQEADVLIHVIDVSNPTWRKQEQSVRSVLADIEASDK 309 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 ++ +LNKID + P +E E+ + + T VSA +G G D ++ Sbjct: 310 PMVRVLNKIDLLDP---VEADELRCQAALEDFTVAVSALEGDGMQDFVS 355 >gi|290961544|ref|YP_003492726.1| GTPase [Streptomyces scabiei 87.22] gi|260651070|emb|CBG74191.1| putative GTPase [Streptomyces scabiei 87.22] Length = 488 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 50 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 109 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD----LLKEIAKRSSRLILILNK 139 + + I+ AD V VVD+ KV + D +++ + K + ++L NK Sbjct: 110 VLGIDASVAAQAEYAIEAADAVVFVVDA----KVGVTDTDEAVVRLLRKANKPVVLCANK 165 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +D E A + I + VS+ G G D+L+ + LP AP Sbjct: 166 VDGPSG----EADATALWSLGIGEPHPVSSLHGRGTGDMLDAVLEALPEAP 212 Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+L+N+ + +V TTR V ++ F+DT GI Sbjct: 226 IALIGRPNVGKSSLLNKVANEERVVVNEIAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 285 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + A I ++D+ + V ++ + L++ N Sbjct: 286 HLQQGADYYASLRTAAAVEKAEVAVI---LIDASESISVQDQRIVTMAVEAGRALVVAYN 342 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 343 KWDTLDEER 351 >gi|257876568|ref|ZP_05656221.1| GTP-binding protein engA [Enterococcus casseliflavus EC20] gi|257810734|gb|EEV39554.1| GTP-binding protein engA [Enterococcus casseliflavus EC20] Length = 436 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ + S RE + +L+ + +S++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIVFIT-SAREGVTDADELVARLLYKSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + E + + + +S + G G DVL+ Sbjct: 123 -NPEMRTDIYEFYG--LGLGDPYPISGSHGLGIGDVLD 157 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 4/125 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + IV+ TTR +I SE + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGMRKKG 237 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ +D+V +V+++ ++ + + +I+++NK D Sbjct: 238 KIYESTEKYSVMRAMRAIERSDVVLMVLNAEEGIREQDKRIAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVKPE 146 +K E Sbjct: 298 TLKKE 302 >gi|257873989|ref|ZP_05653642.1| GTP-binding protein engA [Enterococcus casseliflavus EC10] gi|257808153|gb|EEV36975.1| GTP-binding protein engA [Enterococcus casseliflavus EC10] Length = 436 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ + S RE + +L+ + +S++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIVFIT-SAREGVTDADELVARLLYKSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + E + + + +S + G G DVL+ Sbjct: 123 -NPEMRTDIYEFYG--LGLGDPYPISGSHGLGIGDVLD 157 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + IV+ TTR +I SE + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGMRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I+ +D+V +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIERSDVVLMVLNAEEGIREQDKRIAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVKPE 146 +K E Sbjct: 298 TLKKE 302 >gi|291456800|ref|ZP_06596190.1| ribosome-associated GTPase EngA [Bifidobacterium breve DSM 20213] gi|291382077|gb|EFE89595.1| ribosome-associated GTPase EngA [Bifidobacterium breve DSM 20213] Length = 708 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAIVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 333 DVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRASGKPVVLAVNKIDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E L AE + + + + +SA G G D+L+ L Sbjct: 393 NASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALGKL 432 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ ++ ++V TTR V IV +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAHSERAVVNDLAGTTRDPVDEIVDIDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ D+ + + ++ ++L+ N Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERSELALILFDASQPISDQDLKVMSTAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDAM 571 >gi|289667654|ref|ZP_06488729.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 446 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 18/172 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + +R + + ++ AD+ +V+D+ + + I D + + R + I NK D + Sbjct: 281 IEREGMRRARAELERADLALVVLDARDPQAAREAIGDAIDAV----PRQLWIHNKCDLLS 336 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 L+ AN +V VSA G G + L+ L L V S D Sbjct: 337 DAVPLD----ANAIV-------VSAVTGQGLEQ-LHIRLRELALGDGVESVD 376 >gi|122701451|emb|CAL88115.1| GTPase [Helicobacter pylori] gi|242255898|gb|ACS88933.1| GTPase [Helicobacter pylori] gi|242255932|gb|ACS88950.1| GTPase [Helicobacter pylori] gi|292806698|gb|ADE42479.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|29829012|ref|NP_823646.1| ATP/GTP-binding protein [Streptomyces avermitilis MA-4680] gi|29606118|dbj|BAC70181.1| putative ATP/GTP-binding protein [Streptomyces avermitilis MA-4680] Length = 497 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 10/168 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + DT G Sbjct: 276 SVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRH 335 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + R + + +D++ VVD SH E + ++++++ I+++NK Sbjct: 336 LPHHLVEAFRSTMEEVGDSDLILHVVDGSHPVPEEQLAAVREVIRDVGATGVPEIVVINK 395 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D P L+ Q + N+ +++ VSA G G ++L + + LP Sbjct: 396 ADAADP--LVLQRLMRNE----KRSIAVSARTGQGIAELLALIDNELP 437 >gi|89902988|ref|YP_525459.1| tRNA modification GTPase TrmE [Rhodoferax ferrireducens T118] gi|122478002|sp|Q21QM5|MNME_RHOFD RecName: Full=tRNA modification GTPase mnmE gi|89347725|gb|ABD71928.1| tRNA modification GTPase trmE [Rhodoferax ferrireducens T118] Length = 469 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N GKS+L+N GA+++IVT TTR V+ + + + +DT G+ ++ Sbjct: 234 TVVIAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPVHVIDTAGLRDS 293 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRE 114 D K+ I +W I+ AD V + D R+ Sbjct: 294 DDVIEKIGIARTWDVIEAADAVLFLHDLTRK 324 >gi|308176886|ref|YP_003916292.1| GTPase [Arthrobacter arilaitensis Re117] gi|307744349|emb|CBT75321.1| putative GTPase [Arthrobacter arilaitensis Re117] Length = 553 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR A V + T VR +E DT G + Sbjct: 333 AVAIAGYTNAGKSSLLNRLTNAGVLVENALFATLDPTVRQSATEDGLTYTLADTVGFVSN 392 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIH---DLLKEIAKRSSRLILILNK 139 + R + I +D++ VVD SH + + I +L E+ + I+++NK Sbjct: 393 LPTQLVEAFRSTLEEIADSDLILHVVDGSHPDPEGQIQAVRTVLGEVDALNIPEIIVVNK 452 Query: 140 IDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D P ER+ + T +VSA G G +++L + S++P Sbjct: 453 ADVADPFVIERIRNRE---------SNTAVVSAHTGEGIEELLEKISSSIP 494 >gi|297161654|gb|ADI11366.1| GTP-binding protein EngA [Streptomyces bingchenggensis BCW-1] Length = 488 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V + TR V + +DT G Sbjct: 52 VLAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWSGRRFKVVDTGGWEQD 111 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ ++K + + ++L NK+D Sbjct: 112 VLGIDASVAAQAEFAIEAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKVDGP 171 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A + L E + VSA G G D+L+ + LP AP Sbjct: 172 SAE---ADAAMLWSLGLGEP-YPVSALHGRGTGDMLDAVLEALPEAP 214 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +AL+G N GKS+L+N+ G + +V TTR V ++ F+DT GI Sbjct: 228 IALIGRPNVGKSSLLNKVAGEERVVVNEMAGTTRDPVDELIELGGVTWKFVDTAGIRRRV 287 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++DS + V ++ + +++ N Sbjct: 288 HLQEGADYYASLR---TAAAVEKAELAVILIDSSESISVQDQRIISMAVEAGRAIVVAYN 344 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 345 KWDTLDEER 353 >gi|261402146|ref|YP_003246370.1| small GTP-binding protein [Methanocaldococcus vulcanius M7] gi|261369139|gb|ACX71888.1| small GTP-binding protein [Methanocaldococcus vulcanius M7] Length = 183 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 20/179 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR--------GIVSEKE--SQIVF 74 +A+VGA N GKS+++N G VS+V+ TT+ ++ G V E+ ++++F Sbjct: 6 IAIVGAENVGKSSIMNALFGKHVSMVSEVAGTTKMPIKKYWGKFKIGRVKEEPEFAKLIF 65 Query: 75 LDTPGIFNAKDSYHKLM----IRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIA 127 +D G++ DS +M + ++ I AD++ ++D L +H +LK Sbjct: 66 VDLGGLYAKSDSQSPIMTPKILEKTFKEINEADMILHIIDGTVGLLRSSEKLHHILK--F 123 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + +I+++NK D + E + E + + F VSA G D++N + L Sbjct: 124 RYQKPIIVVINKCDLLNAEEKEQLREYVERRLNNSPIF-VSAKTLEGIPDLINAIVKYL 181 >gi|254582943|ref|XP_002499203.1| ZYRO0E06446p [Zygosaccharomyces rouxii] gi|238942777|emb|CAR30948.1| ZYRO0E06446p [Zygosaccharomyces rouxii] Length = 506 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 V L+G NAGKS+L+N VSI++H TTR V + ++ DT GI + + Sbjct: 252 VVLLGPPNAGKSSLINSISNDDVSIISHTPGTTRDTVEASIDVNGYKVTISDTAGIRSHS 311 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILNKID 141 D L I + + D+ L+VD + +N + +++ + K ++I+NK D Sbjct: 312 SDEIELLGIERAIKKSEQCDLCLLIVDPLNKPLINEDLTQMIQSMYKEGKEFVIIVNKQD 371 Query: 142 CVKPE 146 + E Sbjct: 372 LLTDE 376 >gi|260942413|ref|XP_002615505.1| hypothetical protein CLUG_04387 [Clavispora lusitaniae ATCC 42720] gi|238850795|gb|EEQ40259.1| hypothetical protein CLUG_04387 [Clavispora lusitaniae ATCC 42720] Length = 492 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 4/176 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 V L+G NAGKS+L+N +IV+H TTR I+ + ++V D+ GI Sbjct: 250 VCLLGPPNAGKSSLLNYLANNDTAIVSHIAGTTRDILDVPLDIGGFKVVVGDSAGIRSLE 309 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ + IR + D+V V+ + L ++ + + + K +++LNK D Sbjct: 310 KADTIEQEGIRRAKQRSLVGDVVVAVLPVNEPLSPDLKEHMDLLRKEQKPTVVVLNKADL 369 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 V E++ + A V E +VS G G D + L + +A ++D + Sbjct: 370 V--EKVDKTAFTQALQVKPENVHVVSCLNGQGMDSLREALVAHFKVASMSETSDPV 423 >gi|303328286|ref|ZP_07358724.1| GTP-binding protein HflX [Desulfovibrio sp. 3_1_syn3] gi|302861616|gb|EFL84552.1| GTP-binding protein HflX [Desulfovibrio sp. 3_1_syn3] Length = 565 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 78/176 (44%), Gaps = 22/176 (12%) Query: 20 SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 SR G ALVG TNAGKSTL+NR + V T R + E +I+ DT Sbjct: 382 SRQGIPLAALVGYTNAGKSTLLNRLTRSDVLAENKLFATLDPTTRRLRFPAEREIILADT 441 Query: 78 PGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSS 131 G ++ +LM R + ++ AD++ V D SH +L I +L E+ Sbjct: 442 VGFI--RNLPKELMDAFRATLEELEAADLLVHVADASHPDLLQQISAVETILAEMELDRV 499 Query: 132 RLILILNKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +L+LNK D P R AE+A+ VSA G G LNYL L Sbjct: 500 PRLLVLNKWDQLAAPAR----AELADAFPL---ALPVSAKSGDG----LNYLLEQL 544 >gi|160940458|ref|ZP_02087803.1| hypothetical protein CLOBOL_05348 [Clostridium bolteae ATCC BAA-613] gi|158437038|gb|EDP14805.1| hypothetical protein CLOBOL_05348 [Clostridium bolteae ATCC BAA-613] Length = 411 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 17/156 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + G NAGKS+++N G +++V+ K TT + + + ++ +DTPGI + Sbjct: 14 IGFFGRRNAGKSSVLNAVTGQDLAVVSDVKGTTTDPVYKAMELLPLGPVMMIDTPGI-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L +R S+ + D+ LV+D+ + LLK+I ++ + + NK D V Sbjct: 73 EGQLGSLRVRKSYQVLNKTDVAVLVMDACHGPAPEDYTLLKKIGEKQIPCVAVCNKADVV 132 Query: 144 -----KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +PE + E + VSA G G Sbjct: 133 GAAGGRPEGIPESVPV----------LSVSAHTGQG 158 >gi|122702379|emb|CAL88380.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|122701469|emb|CAL88124.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|289662289|ref|ZP_06483870.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 446 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 18/172 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + +R + + ++ AD+ +V+D+ + + I D + + R + I NK D + Sbjct: 281 IEREGMRRARAELERADLALVVLDARDPQAAREAIGDAIDAV----PRQLWIHNKCDLLS 336 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 L+ AN +V VSA G G + L+ L L V S D Sbjct: 337 DAVPLD----ANAIV-------VSAVTGQGLEQ-LHIRLRELALGDGVESVD 376 >gi|218461047|ref|ZP_03501138.1| GTPase EngB [Rhizobium etli Kim 5] Length = 217 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 23/187 (12%) Query: 25 VALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQI---VFLDT 77 VA G +N GKS+L+N VG A+ S + Q V S + + +D Sbjct: 33 VAFAGRSNVGKSSLINALVGQKGLARTSNTPGRTQELNYFVPDGYSGEGGDLPPMAIVDM 92 Query: 78 PGIFNAK------DSYHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 PG A+ D + KL+ +T+K V +++DS +K N D+L + K Sbjct: 93 PGYGYAQAPKEQVDKWTKLVFDYLRGRATLKR---VYVLIDSRHGIKKNDEDVLTLLDKA 149 Query: 130 SSRLILILNKIDCVK----PERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + L+L K D +K P+ L E A+ I + S+ KG G DD+ + Sbjct: 150 AVSYQLVLTKTDKIKAPAVPKLLAETADKIRKRPAAYPFVLSTSSEKGDGLDDLRQAIAE 209 Query: 185 TLPLAPW 191 T+ +A W Sbjct: 210 TVGIANW 216 >gi|229587033|ref|YP_002845534.1| GTP-binding protein EngA [Rickettsia africae ESF-5] gi|259645884|sp|C3PPD1|DER_RICAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|228022083|gb|ACP53791.1| GTP-binding protein [Rickettsia africae ESF-5] Length = 447 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 + LVG N GKSTL NR K +IV TR R K FL DTPG+ Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRD--RKYTDGKIGSFEFLLIDTPGLDE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S + +I + I AD++C +VD + + L + K + IL++NK C Sbjct: 64 HPNSMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 122 ---EKAFDFDKEYYKLGF-DSMIAISAEHGTGLIDLYDEIIAKLP 162 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 7/138 (5%) Query: 13 KDFVQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 K + D + C+ +V G NAGKST +N + + + + TR + K + Sbjct: 168 KTNIADPIKGDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNN 227 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWS----TIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I +DT G+ K + K + +LS S +IK A+ V L++D+ LK ++ + Sbjct: 228 HIKLIDTAGL-RKKSTITKSLEKLSASDTINSIKFANTVILMIDALAPLKQQDLNIASHV 286 Query: 127 AKRSSRLILILNKIDCVK 144 +++++NK D VK Sbjct: 287 VNEGRSIVIVVNKWDLVK 304 >gi|122702537|emb|CAL88458.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|320103232|ref|YP_004178823.1| GTP-binding protein Obg/CgtA [Isosphaera pallida ATCC 43644] gi|319750514|gb|ADV62274.1| GTP-binding protein Obg/CgtA [Isosphaera pallida ATCC 43644] Length = 406 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 36/208 (17%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 V L+G NAGKSTL++R A+ I + TT+ G+V + E V D PG+ Sbjct: 161 VGLLGLPNAGKSTLLSRVSRARPEIADYPF-TTKYPNLGLVRLDHERAFVMADIPGLIEG 219 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-------SHRELKVNIHDLLKEIAKRSSRL--- 133 + H L ++H + L+V + N H + E+A+ S+RL Sbjct: 220 AHAGHG----LGHEFLRHVERTKLLVHLVEAAPLDGTDPVANYHLIRDEVARYSARLAER 275 Query: 134 --ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL----- 186 +++L K+D P +LE+ A L + F VS+ G G +LN + L Sbjct: 276 PELVVLTKLDAA-PSDVLERFRAA--LGPDREVFGVSSVTGQGLPPLLNRIVERLNEVAA 332 Query: 187 ----PLA------PWVYSADQISDLPMF 204 P A P + +I+DLP + Sbjct: 333 DQDEPTAETEAALPVRFDPARIADLPPY 360 >gi|296330032|ref|ZP_06872516.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676756|ref|YP_003868428.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153071|gb|EFG93936.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305415000|gb|ADM40119.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str. W23] Length = 459 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT GI +D Sbjct: 226 IIGRPNVGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC---V 143 ++ + S +K AD++ LV++ EL L + A +I+I+NK D + Sbjct: 286 VERIGVERSRQVLKEADLILLVLNYSEELSEEDVKLFE--AVEGMDVIVIMNKTDLEAKI 343 Query: 144 KPERLLEQA 152 ER+ E A Sbjct: 344 DSERVRELA 352 >gi|122702515|emb|CAL88448.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ ++ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKKIKAINLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAILSALNL 168 >gi|78050039|ref|YP_366214.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123583683|sp|Q3BLZ9|MNME_XANC5 RecName: Full=tRNA modification GTPase mnmE gi|78038469|emb|CAJ26214.1| tRNA modification GTPase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 446 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 14/168 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + +R + + ++ AD+ +V+D+ R+ + D + + R + I NK D Sbjct: 281 IEREGMRRARAELERADLALVVLDA-RDPQA-ARDAIGDAIDAVPRQLWIHNKCDL---- 334 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 + N + VSA G G + L+ L L V S Sbjct: 335 -------LGNAVSLDANAIAVSAVTGQGLEQ-LHIRLRALALGDGVDS 374 >gi|317011582|gb|ADU85329.1| tRNA modification GTPase TrmE [Helicobacter pylori SouthAfrica7] Length = 450 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 5 EITFFNEHKDF--VQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I F + DF +Q G ++++G NAGKS+L+N + + ++V+ TTR + Sbjct: 193 QIASFKDLLDFSNMQKQKNKGHALSIIGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTI 252 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 ++ + ++ +DT GI + D +L I S ++++ DI+ V D + L+ Sbjct: 253 EEVIELQGHKVRLIDTAGIRESMDEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFT 312 Query: 122 LLKEIAKRSSRLILILNKID 141 ++ + + I++LNK D Sbjct: 313 IIDALNRAKKPCIVVLNKND 332 >gi|292806524|gb|ADE42392.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702567|emb|CAL88473.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALNL 168 >gi|28199975|ref|NP_780289.1| tRNA modification GTPase TrmE [Xylella fastidiosa Temecula1] gi|182682729|ref|YP_001830889.1| tRNA modification GTPase TrmE [Xylella fastidiosa M23] gi|32130200|sp|Q879S5|MNME_XYLFT RecName: Full=tRNA modification GTPase mnmE gi|28058106|gb|AAO29938.1| thiophene and furan oxidation protein [Xylella fastidiosa Temecula1] gi|182632839|gb|ACB93615.1| tRNA modification GTPase TrmE [Xylella fastidiosa M23] gi|307579023|gb|ADN62992.1| tRNA modification GTPase TrmE [Xylella fastidiosa subsp. fastidiosa GB514] Length = 451 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 16/152 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG N GKS+L+N +G+ +IVT TTR +R V + V +DT G+ D+ Sbjct: 225 LVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLRESVHFHGLEFVLVDTAGLRGEGDA 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILILNKIDCV-K 144 + +R + + ++ AD+ +V+D+ I L L + R++ I NK+D + + Sbjct: 285 IEREGMRRTLNELQRADLALVVLDA---CDPQIGSLALADALTSVPRVLWIHNKLDLLTE 341 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 P +L+ I VSA G G D Sbjct: 342 PPSVLDTDVIP-----------VSAMTGAGLD 362 >gi|71274603|ref|ZP_00650891.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Dixon] gi|71900907|ref|ZP_00683022.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|170730865|ref|YP_001776298.1| GTP-binding protein EngA [Xylella fastidiosa M12] gi|238687938|sp|B0U489|DER_XYLFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71164335|gb|EAO14049.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Dixon] gi|71729319|gb|EAO31435.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|167965658|gb|ACA12668.1| GTP-binding protein [Xylella fastidiosa M12] Length = 465 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL N + ++V + TR G+ + + +DT G+ Sbjct: 4 LVALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D R + AD+V VV+ D+L + K S +L++NKID Sbjct: 64 KEDGLAGATARQARLAAAEADVVLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V + +E A+ VSA G DD++ + + LP Sbjct: 124 VSDTTV--HSEFAH--YGFSDVVPVSAAHRQGLDDLIEQVLAWLP 164 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 6/156 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + IV+ TTR + + E + +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDEFRYRLVDTAGLRRKS 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLLLDAGEGVTDQDATVLAAILDAGKALVVAMNKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIEKTFMVSATKGHGC 175 + + EQAE ++ KL F+ +V + HG Sbjct: 301 GLATYQ-REQAEDLLSRKLGFVNWAEVVRLSAKHGS 335 >gi|298245801|ref|ZP_06969607.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963] gi|297553282|gb|EFH87147.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963] Length = 433 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 15/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKSTL N A V T + R ++ + + DT G Sbjct: 214 VVAVVGYTNAGKSTLFNALTEAGVLAEDKLFATLDPVTRRLLLPNNQEALLSDTVGFIQK 273 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHR---ELKVNIHDLLKEIAKRSSRLILILNK 139 + R + + AD++ VVD SH E +HD+L E+ + + LNK Sbjct: 274 LPTQLIAAFRATLEEVIEADLLLEVVDISHENAFEQSETVHDILDELGAAAKPRVTALNK 333 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG----CDDVLNYLCSTL 186 ID + L+ + +SA +G G C +V + L T+ Sbjct: 334 IDLLTDPDALDPS-------LYSHAVPISAAEGKGLEELCAEVASVLADTM 377 >gi|212702039|ref|ZP_03310167.1| hypothetical protein DESPIG_00041 [Desulfovibrio piger ATCC 29098] gi|212674554|gb|EEB35037.1| hypothetical protein DESPIG_00041 [Desulfovibrio piger ATCC 29098] Length = 382 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 10/163 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI--- 80 +A++G NAGKS+++N G + IV+ TTR V + E++ Q VF+DT G+ Sbjct: 122 LAMLGRPNAGKSSMINALAGEERMIVSDVAGTTRDSV-DVRFERDGQDYVFVDTAGVRRR 180 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D K + + + AD+ L +D+ + L+ + R ++++NK Sbjct: 181 TKITDIVEKYSVNAALKSTTKADVTLLTLDATEGVSQQDKRLMDLLDTRKIPFMVLVNKC 240 Query: 141 DCVKPERLLEQ--AEIANKLVFIEKT--FMVSATKGHGCDDVL 179 D V P L+Q ++ L F + VSA KG G + +L Sbjct: 241 DLV-PAGQLKQLLQNVSEMLAFCKHVPILTVSALKGTGLNKIL 282 >gi|171913936|ref|ZP_02929406.1| GTP-binding protein [Verrucomicrobium spinosum DSM 4136] Length = 502 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 13/154 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG NAGKS+LVN +G + +IV+ TTR + + +DT G+ Sbjct: 221 IAIVGKPNAGKSSLVNAILGEQRTIVSEIAGTTRDAIDIPCTVAGKNYTLVDTAGLRRKA 280 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D+ + TI+ AD+ L+VD + + + I + I++LNK D Sbjct: 281 KIQDAVESFSAMQATKTIRRADLCLLMVDCAEGISMQDRKIASLIVEYQKPCIILLNKFD 340 Query: 142 CVKP--------ERLLEQAEIANKLVFIEKTFMV 167 P E LLE A + F+ M+ Sbjct: 341 LYHPTGKMKDRTEELLENA--GREFFFLRHAPMI 372 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 11/153 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 VA+VG N GKS L NR G ++IV + TR R + + + + F +DT GI Sbjct: 9 VAIVGRPNVGKSALFNRLAGKNIAIVHDRPGVTRD--RLVATCRRGVVPFDIMDTGGIGA 66 Query: 83 A-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D + + + ++ AD++ VVD + +L + + K +IL++NK D Sbjct: 67 TIEDEFAAQVQAEANLAMEEADLILFVVDGVEGVTPIDLELSRTLRKSPKPIILVVNKAD 126 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 K R AE A KL F +V + HG Sbjct: 127 SDK--RRAHGAEFA-KLGF---NHLVDVSAAHG 153 >gi|122702341|emb|CAL88361.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +L+ L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLR-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122700829|emb|CAL88003.1| GTPase [Helicobacter pylori] gi|122700843|emb|CAL88010.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|325187572|emb|CCA22109.1| ras family GTPase putative [Albugo laibachii Nc14] gi|325188870|emb|CCA23399.1| ras family GTPase putative [Albugo laibachii Nc14] Length = 535 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 12/182 (6%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 NE + + ++S A+VG N GKSTL+NR + + + TR + + E Sbjct: 229 NEDDNKIDEDSHKIKFAIVGRPNVGKSTLLNRIIREDRVLTGPEPGVTRDSIEVPWTFGE 288 Query: 70 SQIVFLDTPGIFNAKDSYHK-----LMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLL 123 +I +DT GI H L +R S+ I A +V +V D S ++L + Sbjct: 289 HEIKLIDTAGIRRHSKRDHSNQIEDLSVRDSFDAIDKAQVVAIVTDLSEKKLTHMDLTIA 348 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKL------VFIEKTFMVSATKGHGCDD 177 + + ++ L++I NK D VK E + + +L V SA GHG Sbjct: 349 QRVIEQGRSLLIIANKCDMVKTSYEYEMSRVKQQLEDSLAQVRGVSVLPTSALTGHGTRK 408 Query: 178 VL 179 +L Sbjct: 409 IL 410 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIFN 82 +ALVG TN GKSTL NR ++ +IV + TTR G ++ E +++ DT G+ + Sbjct: 53 LALVGRTNVGKSTLFNRLTKSRRAIVHNVPGTTRDRRFAPGRIAGLEFEVI--DTGGLED 110 Query: 83 AKD-SYHKLMIRLSWSTIKHADIVCLVVDSHR 113 A S + M+ + + AD++ ++D + Sbjct: 111 APSGSLEEGMLSQTKIAVHEADLIFFLIDGRQ 142 >gi|323453254|gb|EGB09126.1| hypothetical protein AURANDRAFT_37344 [Aureococcus anophagefferens] Length = 540 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAK--VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 V +G N GKS+L+NRF+G +IV+ TTR V + + F+DT G+ Sbjct: 262 VCFLGRPNVGKSSLLNRFLGPGETRAIVSDVAGTTRDAVDAELDVDGTIFRFVDTAGVRR 321 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 K M+ + T + AD+V LVVD+ +EL L + +A +++ N Sbjct: 322 KARVTKQGTEPEMVARALRTARLADVVLLVVDATQELSDQDAALAQRVADDGRACVVLAN 381 Query: 139 KIDC 142 K D Sbjct: 382 KWDA 385 >gi|302670901|ref|YP_003830861.1| GTP-binding protein [Butyrivibrio proteoclasticus B316] gi|302395374|gb|ADL34279.1| GTP-binding protein [Butyrivibrio proteoclasticus B316] Length = 442 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 4/166 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S+ VA+VG N GKSTL N G++++IV TR + V +DT G Sbjct: 2 SKRNIVAVVGRPNVGKSTLFNALAGSRIAIVQDTPGVTRDRIYQDVEWLNHSFTLIDTGG 61 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 I ++KD M + I AD++ +VD + L + + + K ++L +N Sbjct: 62 IEPDSKDIILAQMRDQAQIAIDTADVIIFMVDVKQGLTDSDSKVADMLRKSGKPIVLCVN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 K+D + ++ E N + I + F +SA G D+L + S Sbjct: 122 KVDNYNRDS-MDVYEFYN--LGIGEPFPISAVNKQGIGDLLEEVVS 164 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 12/159 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+++N+ +G IV+ TTR + V + F+DT G+ Sbjct: 181 IAIIGKPNVGKSSIINKLIGENRLIVSDIAGTTRDAIDTPVKYNGKKYTFIDTAGLRRKN 240 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILI-LNK 139 KD MI + ++ AD+ LV+++ E V D + IA S + ++I +NK Sbjct: 241 KIKDELEHYMIVRTVGAVERADVAILVINA--EDGVTEQDAKIAGIAHESGKAVIIAVNK 298 Query: 140 IDCVKPERLLEQ---AEIANKLVFIE--KTFMVSATKGH 173 D ++ + + +I N L F+ + +SA G Sbjct: 299 WDLIEKDNHSVKEFTKDIRNTLAFMNYAEIIFISAETGQ 337 >gi|302335702|ref|YP_003800909.1| ribosome-associated GTPase EngA [Olsenella uli DSM 7084] gi|301319542|gb|ADK68029.1| ribosome-associated GTPase EngA [Olsenella uli DSM 7084] Length = 439 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 11/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L NR + SIV TTR V ++ K + +DT G+ Sbjct: 181 VAIIGRPNVGKSSLTNRLARRERSIVADVAGTTRDAVDITIAWKGQRFCLVDTAGMRKRN 240 Query: 85 D-----SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 Y+ L+ L + AD+ LVVDS + L R ++++LNK Sbjct: 241 QVHEDVEYYSLVRGL--EAMDRADVCLLVVDSTVGVTEQDQKLAGMAIDRGCAVVIVLNK 298 Query: 140 IDCVKPERLLEQ--AEIANKLVFI--EKTFMVSATKGHGCDDVL 179 D + +R ++ + + ++ F VSA G D VL Sbjct: 299 WDLITGDRQRDEVMSSLDARMTFATWAPAVNVSALTGRAVDSVL 342 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKSTLVNR + +IV TR + V +DT GI +A Sbjct: 6 VAVVGRPNVGKSTLVNRLAVNRDAIVHESRGVTRDRSYHACDWNGREFVLIDTGGIESAR 65 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILILN 138 KD + + + AD + VVD V + D +E+A+ R +R + L +N Sbjct: 66 SKDVFAPRIREQALVACDEADAIIFVVDG----SVGVTDEDEEVARVVRRTRKPVFLCVN 121 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K+D P L+ + + + + +SA G+G D+L+ + ++LP Sbjct: 122 KMD--DPSTELDAWNFYS--LGVGEPRALSAGHGYGTGDLLDDVVASLP 166 >gi|292806418|gb|ADE42339.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRALNL 168 >gi|284053846|ref|ZP_06384056.1| tRNA modification GTPase TrmE [Arthrospira platensis str. Paraca] Length = 469 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + + +IVT TTR +V + + LDT G Sbjct: 223 RTGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D ++ + S + AD+V +D + +++ +++ R +I+++NK Sbjct: 283 IRKSDDKVEQIGVERSQIAAQSADLVLFTLDCEKGWTEGENEIYQQVKNRP--IIVVMNK 340 Query: 140 IDCVKPERL--LEQAEIANKLVFIEKTFMV--SATKGHGCDDV 178 D + +L L QA I NKL I+ + ++ +AT G D+ Sbjct: 341 SDRLSSAQLENLRQA-IINKL-DIKPSLIIATAATLNQGITDL 381 >gi|122700775|emb|CAL87976.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|34581350|ref|ZP_00142830.1| conserved GTP-binding protein [Rickettsia sibirica 246] gi|28262735|gb|EAA26239.1| conserved GTP-binding protein [Rickettsia sibirica 246] Length = 447 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 + LVG N GKSTL NR K +IV TR R K FL DTPG+ Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRD--RKYTDGKIGSFEFLLIDTPGLDE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S + +I + I AD++C +VD + + L + K + IL++NK C Sbjct: 64 HPNSMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 122 ---EKAFDFDKEYYKLGF-DSMIAISAEHGTGLIDLYDEIIAKLP 162 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D + C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 171 IADPIKGDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIK 230 Query: 74 FLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S KL + ++IK A+ V L++D+ LK ++ + Sbjct: 231 LIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQDLNIASYVVNEG 290 Query: 131 SRLILILNKIDCVK 144 +++++NK D VK Sbjct: 291 RSIVIVVNKWDLVK 304 >gi|292806542|gb|ADE42401.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G ++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIEAILRALNL 168 >gi|257059220|ref|YP_003137108.1| small GTP-binding protein [Cyanothece sp. PCC 8802] gi|256589386|gb|ACV00273.1| small GTP-binding protein [Cyanothece sp. PCC 8802] Length = 531 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 19/127 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT------RSIVRGIVSEKESQIVFLDTP 78 V + G +AGK++L+N +G V V + TT R +RG+ E I+ DTP Sbjct: 133 VVVFGTGSAGKTSLINALIGEMVGNVEATMGTTQIGETYRLKLRGVSQE----ILITDTP 188 Query: 79 GIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 GI A KL +L+ AD++ VVD+ +L+ + +D L+ +AK R +L Sbjct: 189 GILEAGVEGTQREKLARQLA----TEADLLLFVVDN--DLRQSEYDPLQILAKIGKRSLL 242 Query: 136 ILNKIDC 142 I NKID Sbjct: 243 IFNKIDL 249 >gi|312601166|gb|ADQ90421.1| tRNA modification GTPase mnmE [Mycoplasma hyopneumoniae 168] Length = 255 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVGA N+GKS+L+N + +I++ TTR +V G DT GI + Sbjct: 34 LVGAPNSGKSSLLNILINENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEK 93 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ I S+ +IK AD++ ++D+ + + N+ LK A+ + I NK D ++ + Sbjct: 94 IEQIGIEKSYESIKKADLILHIIDASEKNRQNLD--LKAKARPDQIYLKIYNKSDLLENQ 151 >gi|292806656|gb|ADE42458.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQISDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122701567|emb|CAL88173.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VV+ S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVNGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122701593|emb|CAL88186.1| GTPase [Helicobacter pylori] gi|122702727|emb|CAL88553.1| GTPase [Helicobacter pylori] gi|242255950|gb|ACS88959.1| GTPase [Helicobacter pylori] gi|292806416|gb|ADE42338.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALNL 168 >gi|21672311|ref|NP_660378.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|2495118|sp|Q44633|MNME_BUCAP RecName: Full=tRNA modification GTPase mnmE gi|1369898|dbj|BAA12845.1| thiophene and furan oxidation protein [Buchnera aphidicola] gi|2827009|gb|AAC38101.1| tRNA methyltransferase [Buchnera aphidicola] gi|21622910|gb|AAM67589.1| thiophene and furan oxidation protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 456 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 11/156 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + +VG NAGKS+L+N +IVT TTR ++ ++ +DT G+ + Sbjct: 221 IVIVGPPNAGKSSLLNVLSCRDRAIVTDLPGTTRDVLYENINIHGISCEIIDTAGLRETE 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRS-SRLILILNKI 140 D K+ I+ SW IK++D V V+D S + K +K+I+ + + +LNK Sbjct: 281 DKIEKIGIQRSWEMIKNSDHVLYVMDKTISLEDQKKTSIQFMKQISSYNIQEVTFVLNKN 340 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D V E +I N L+FI +SA G G D Sbjct: 341 DLV--EDFCGITKIEN-LLFIS----ISALTGQGID 369 >gi|292806476|gb|ADE42368.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYTFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|293115597|ref|ZP_05792245.2| ribosome-associated GTPase EngA [Butyrivibrio crossotus DSM 2876] gi|292809015|gb|EFF68220.1| ribosome-associated GTPase EngA [Butyrivibrio crossotus DSM 2876] Length = 446 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+++N+ VG IV+ TTR + ++ ++ VF+DT G+ Sbjct: 185 IAIVGKPNVGKSSIINKIVGESRVIVSDIAGTTRDAIDTDITYNGNEYVFIDTAGLRRKN 244 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +V+D+ + + +R +I+++NK D Sbjct: 245 KIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQDAKIAGIAHERGKGIIVVVNKWD 304 Query: 142 CVK 144 ++ Sbjct: 305 AIE 307 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G ++SIV TR + V+ +DT GI Sbjct: 10 VVAIVGRPNVGKSTLFNALAGEQISIVKDTPGVTRDRIYADVTWLNYNFTLIDTGGIEPE 69 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD M + I AD++ +VD + L V+ + + +RS + ++L++NK+D Sbjct: 70 SKDIILSQMREQAEIAIASADVIIFMVDVRQGL-VDSDSKVANMLRRSGKPVVLVVNKVD 128 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + + E N + I VS+ G D+L+ + P Sbjct: 129 SFQ-KMMTDVYEFYN--LGIGDPVPVSSVGKLGIGDMLDEVVKHFP 171 >gi|261416631|ref|YP_003250314.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373087|gb|ACX75832.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326129|gb|ADL25330.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 475 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A++G NAGKSTL+NR + ++V+ TTR + + V DT G+ Sbjct: 182 AILGRPNAGKSTLLNRLLNEDRAVVSDIPGTTRDSIDCDFVVDGQKFVVTDTAGLRKKAR 241 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D + +I+ +D+ LVVD R +++ + ++ EI K L+++LNK D Sbjct: 242 VEDEVEVFSNMRTLESIRRSDLSVLVVDCTRGMEIQDYRIITEIRKAGKGLVVVLNKWDI 301 Query: 143 V 143 + Sbjct: 302 L 302 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 24/174 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L NR +G + ++V+ + TR K + +DT G F Sbjct: 6 VCIIGRPNVGKSSLFNRILGRRAAVVSDRDGVTRDRHYQNAIYKGHEFTVVDTGG-FLPD 64 Query: 85 DSYHKLM--IRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 DS L +R ++ + AD+V +VD ++V I L ++ A K ++IL+ Sbjct: 65 DSIDVLADSVRAQIFNAVNEADLVLFMVD----IRVGITKLDQQFARLIRKLDKKVILVA 120 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLNYLCSTLP 187 NK + Q + F++ F VSA G+ C +L+ + S LP Sbjct: 121 NKSEL--------QGDRQESYEFLKLGFGQPRTVSALTGYACLSLLDEVVSVLP 166 >gi|269792393|ref|YP_003317297.1| GTP-binding proten HflX [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100028|gb|ACZ19015.1| GTP-binding proten HflX [Thermanaerovibrio acidaminovorans DSM 6589] Length = 357 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 10/170 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKV-QTTRSIVRGIVSEKESQIVFLDTPGIFN 82 V+LVG TN+GK+TL++R G + + ++ T +VRG+ ++F DT G Sbjct: 191 TVSLVGYTNSGKTTLLSRLSGDRGVVGKDELFATLDPLVRGVTLPDGKVVLFSDTVGFIR 250 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE-----LKVNIHDLLKEIAKRSSRLILIL 137 R + + AD+V +V+D + LKV I D+L +I ++L Sbjct: 251 RLPVELVAAFRATLEEVAFADLVAVVIDGASKERWEHLKV-IGDVLDQIGAGEIPRAILL 309 Query: 138 NKIDCVKPERLLEQAEIANKLVFIE-KTFMVSATKGHGCDDVLNYLCSTL 186 NK D E EI +++ F VS G G D L +L +L Sbjct: 310 NKEDLWGSSD--EAFEILSEMRGTGLPVFPVSGITGQGLDSFLGWLQGSL 357 >gi|239618515|ref|YP_002941837.1| tRNA modification GTPase TrmE [Kosmotoga olearia TBF 19.5.1] gi|239507346|gb|ACR80833.1| tRNA modification GTPase TrmE [Kosmotoga olearia TBF 19.5.1] Length = 440 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G TN GKSTL+N + +IVT TTR + +S +DT GI + D Sbjct: 217 IAGRTNVGKSTLLNALLRRDRAIVTDIPGTTRDTIEEDISINGIYFRLVDTAGIRESSDK 276 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 ++ I S IK AD+V +VD N +L +++ K ILI NK+D V+ Sbjct: 277 VERIGIERSLKQIKEADLVLFMVDLIE--PENDLELYEKLRKEFRHSILIGNKLDMVE 332 >gi|212690606|ref|ZP_03298734.1| hypothetical protein BACDOR_00092 [Bacteroides dorei DSM 17855] gi|212666852|gb|EEB27424.1| hypothetical protein BACDOR_00092 [Bacteroides dorei DSM 17855] Length = 396 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 21/171 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL G N+GKS+L+N G ++V+ TT ++ + + + +F+DTPG F+ Sbjct: 14 VALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVV--DSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + ++ I + I+ DI L+ ++H E K +K++ +++ +IL+LNK D Sbjct: 73 EGELGEMRIIRTLKAIEQTDIALLLCEDEAHEEEK----KWMKQLEEKNIPVILLLNKAD 128 Query: 142 CVKPERLLEQAEIANKLVFIE-----KTFMVSATKGHGCDDVLNYLCSTLP 187 K +IA+ L+ IE K ++SA + G + + LP Sbjct: 129 IRK--------DIASTLLRIEKDCGQKPLVISAKERTGIKKIHQAILEKLP 171 >gi|206603436|gb|EDZ39916.1| tRNA modification GTPase TrmE [Leptospirillum sp. Group II '5-way CG'] Length = 445 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R V + G N+GKS+L NR +G ++V+ TTR ++ G +S + I+ LD+ G Sbjct: 213 RGFSVLITGPVNSGKSSLFNRLLGDSRALVSDIPGTTRDLLEGRISSEYGDIILLDSAGF 272 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D K IR + K ++ V + E+ N + I KR S ++ + NK Sbjct: 273 RKTGDDIEKQGIRRAIKESKDVSLILWV--NSPEMNTNPEIV---IGKRKSGILRVWNKC 327 Query: 141 DC 142 D Sbjct: 328 DL 329 >gi|205373827|ref|ZP_03226629.1| GTP-binding protein EngA [Bacillus coahuilensis m4-4] Length = 262 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG ++SIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSGEWLNHEFNIIDTGGIEIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + I AD++ + + + + K + K ++L +NK+D Sbjct: 65 DEPFLEQIRQQAEIAIDEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E L F E F +S + G G D+L+ P Sbjct: 123 NPE-MRELTYDFYSLGFGEP-FPISGSHGIGLGDLLDAAAEHFP 164 Score = 38.9 bits (89), Expect = 0.93, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +L+G N GKS+LVN +G IV+ TTR + I + S V +DT GI Sbjct: 179 SLIGRPNVGKSSLVNAILGEDRVIVSDIEGTTRDAIDSIFTFNGSPYVIIDTAGI 233 >gi|168215586|ref|ZP_02641211.1| GTP binding protein [Clostridium perfringens NCTC 8239] gi|182382219|gb|EDT79698.1| GTP binding protein [Clostridium perfringens NCTC 8239] Length = 597 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 41/263 (15%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ------ 55 E+ +I E + + ++ V+LVG TNAGKSTL N S + + + Sbjct: 343 ELKKIKKIRETQRERRSKDKTSQVSLVGYTNAGKSTLRNTLCAESASTLATQAKDKVFEA 402 Query: 56 -----TTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLV 108 T + R I I DT G + H+L+ + + + ++D++C V Sbjct: 403 DMLFATLDTTTRAIKLPDNRDITLTDTVGFVSKLP--HELVEAFKSTLEEVIYSDLLCHV 460 Query: 109 VDSH----RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE----QAEIANKLVF 160 VD+ +E + + +L E+ S IL+LNKID E+L E + I NK+V Sbjct: 461 VDASSDNAQEEIIAVEKVLGELKALESAKILVLNKIDKADEEKLNELEAKYSSIYNKVVK 520 Query: 161 IEKTFMVSATKGHGCDDVLNYLCSTLPLA----PWV--YSADQISDLPMFHFTAEITREK 214 I SA + DD+L + LP ++ Y+ Q+ + H A ++ E+ Sbjct: 521 I------SARERINLDDLLEAISEELPYTLKSKEYIIPYTVQQV--VAYLHRNANVSEEE 572 Query: 215 LFLHLHKEIPYSSCVVTEKWEEK 237 +E Y V E+ E K Sbjct: 573 ----YREEGTYIKAEVDEEVENK 591 >gi|149184562|ref|ZP_01862880.1| GTPase [Erythrobacter sp. SD-21] gi|148831882|gb|EDL50315.1| GTPase [Erythrobacter sp. SD-21] Length = 407 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 83/211 (39%), Gaps = 23/211 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R I + + DT G + Sbjct: 177 VVALVGYTNAGKSTLFNRLTGAEVMAEDLLFATLDPTMRAISLPGVEKAILSDTVGFISD 236 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEI-------AKRSSR 132 + R + + AD++C V D S K + +LK + S Sbjct: 237 LPTQLVAAFRATLEEVTAADVICHVRDISNSSAEAQKTQVLRVLKGLDVIDGDDGTSSIP 296 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 ++ + NK D + E+ E ++A+ + +SA G G ++L L L V Sbjct: 297 ILEVWNKWDLLDDEKADELGQLADN---SDDIIRISAVTGEGVQELLVQLGEMLTAKASV 353 Query: 193 YSADQISDLPMFHFTAEITREKLFLHLHKEI 223 F A + +LH H E+ Sbjct: 354 RE---------FEVPASDGKRIAWLHAHGEV 375 >gi|121596419|ref|YP_988315.1| tRNA modification GTPase TrmE [Acidovorax sp. JS42] gi|120608499|gb|ABM44239.1| tRNA modification GTPase trmE [Acidovorax sp. JS42] Length = 486 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 246 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESD 305 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 D ++ I +W I AD V + D R Sbjct: 306 DEVERIGIARAWDEIAGADAVLFLHDLTR 334 >gi|58426746|gb|AAW75783.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 490 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ E Q + +DT GI Sbjct: 30 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 89 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 +D R + + AD+V VVD RE + ++ D +L + K + +L++NKID Sbjct: 90 EDGLAGATARQARAAAGEADLVLFVVDG-REGESSLDDEILAWLRKLARPTVLVINKIDG 148 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E A +SA G D++L + + LP Sbjct: 149 TDEETV--RSEFAR--YGFSDVVALSAAHRQGIDELLEEVGARLP 189 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 8/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 206 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDGRQYRLIDTAGLRRRG 265 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 266 KVEEAVEKFSAFKTLQAIERCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD 325 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYL 182 + + QAE ++ KL F+ + +SA G G ++ + Sbjct: 326 G-QSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGMRELFQAI 369 >gi|241762347|ref|ZP_04760427.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373141|gb|EER62780.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 434 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 28/175 (16%) Query: 7 TFFNEHKDF----VQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EH+ F + R G V L G NAGKSTL+N G ++I TTR ++ Sbjct: 199 ALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINALTGQDIAITAPIAGTTRDVI 258 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 + K + F DT G+ + D K I + I+ ADI+ + + Sbjct: 259 EVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEEADILLWLGQA---------- 308 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +E K ++++ +ID K + E+ +IA VSA G G D Sbjct: 309 --EEAPKTDGEVLVLYPQIDLPKRHPIPEKIDIA-----------VSAVTGEGID 350 >gi|218246171|ref|YP_002371542.1| small GTP-binding protein [Cyanothece sp. PCC 8801] gi|218166649|gb|ACK65386.1| small GTP-binding protein [Cyanothece sp. PCC 8801] Length = 531 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 19/127 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT------RSIVRGIVSEKESQIVFLDTP 78 V + G +AGK++L+N +G V V + TT R +RG+ E I+ DTP Sbjct: 133 VVVFGTGSAGKTSLINALIGEMVGNVEATMGTTQIGETYRLKLRGVSQE----ILITDTP 188 Query: 79 GIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 GI A KL +L+ AD++ VVD+ +L+ + +D L+ +AK R +L Sbjct: 189 GILEAGVEGTQREKLARQLA----TEADLLLFVVDN--DLRQSEYDPLQILAKIGKRSLL 242 Query: 136 ILNKIDC 142 I NKID Sbjct: 243 IFNKIDL 249 >gi|161485602|ref|NP_695919.2| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum NCC2705] gi|317483249|ref|ZP_07942244.1| ribosome-associated GTPase EngA [Bifidobacterium sp. 12_1_47BFAA] gi|316915318|gb|EFV36745.1| ribosome-associated GTPase EngA [Bifidobacterium sp. 12_1_47BFAA] Length = 709 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 333 DVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L AE + + + + +SA G G D+L+ L A Sbjct: 393 QASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALDKLKQA 435 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IV+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + + ++ ++L+ N Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDAM 571 >gi|262374714|ref|ZP_06067986.1| tRNA modification GTPase TrmE [Acinetobacter junii SH205] gi|262310370|gb|EEY91462.1| tRNA modification GTPase TrmE [Acinetobacter junii SH205] Length = 454 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 27/189 (14%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 206 VQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGHERAIVTDIAGTTRDVLHEKISLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 I DT G+ D + IR + I+ AD++ LV D L N LL +A+ Sbjct: 266 GLPITLTDTAGLRETGDIVEREGIRRAIKEIEQADLLLLVYD----LNQNDDPLL--LAQ 319 Query: 129 -------RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 RL+LI NK D + AE+++ F + VSA + G +++ Sbjct: 320 EYFAEHLEPKRLLLIGNKCDLTG-----QAAELSDYQGF--RHIRVSAKQDMGVQALIDA 372 Query: 182 LCSTLPLAP 190 + + P Sbjct: 373 ITAHAGFQP 381 >gi|227833308|ref|YP_002835015.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC 700975] gi|262184292|ref|ZP_06043713.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC 700975] gi|227454324|gb|ACP33077.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC 700975] Length = 492 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G TNAGKS+L+N GA V + T R Q+VF DT G Sbjct: 265 IAIAGYTNAGKSSLINAMTGAGVLVEDALFATLDPTTRRAELADGRQVVFTDTVGFVRHL 324 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLILI 136 + + + + AD++ VVD + I+D++KE + + I++ Sbjct: 325 PTQLVEAFKSTLEEVLSADLMLHVVDGSDPFPLKQIEAVNAVIYDIVKETGEDAPPEIIV 384 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +NKID P L E ++ + VSA G G D++ Sbjct: 385 INKIDQADPLVLAELRHALDR----DNVVYVSAKTGEGIDEL 422 >gi|322691264|ref|YP_004220834.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320456120|dbj|BAJ66742.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 709 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 333 DVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L AE + + + + +SA G G D+L+ L A Sbjct: 393 QASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALDKLKQA 435 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IV+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + + ++ ++L+ N Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDAM 571 >gi|195111166|ref|XP_002000150.1| GI22686 [Drosophila mojavensis] gi|193916744|gb|EDW15611.1| GI22686 [Drosophila mojavensis] Length = 494 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 17/149 (11%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + ++D R+ ++GA N GKS+L+N VSIVT + TTR I+ S +V Sbjct: 235 ELLRDGVRT---VIIGAPNVGKSSLLNLLCQRAVSIVTDQAGTTRDIIETTHSFGGYPVV 291 Query: 74 FLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLV--------VDSHRELKVNIHDLLK 124 F DT G+ + D+ + + + +D++ L+ VDS+ L I L+ Sbjct: 292 FADTAGLRKHTTDAIEMEGMARARQCLAQSDLILLLTDAKALRDVDSNESLNGRIDSYLQ 351 Query: 125 E--IAK---RSSRLILILNKIDCVKPERL 148 E I K R RL L+ NK D + E + Sbjct: 352 ELDIPKELCRGKRLQLVANKTDTLSAEEI 380 >gi|189485536|ref|YP_001956477.1| obg subfamily GTP-binding protein [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|261277730|sp|B1H0I4|OBG_UNCTG RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|170287495|dbj|BAG14016.1| obg subfamily GTP-binding protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 419 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 17/182 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G NAGKSTL+++ AK I + TT + G+V+ K D PGI Sbjct: 159 VGLLGLPNAGKSTLLSQISAAKPKIADYPF-TTLAPNLGVVNYKGKHFTAADIPGIIEG- 216 Query: 85 DSYHKLMIRLSW-STIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRL-----I 134 +Y + + + I+ ++ V+D R+ N + E+ K S L I Sbjct: 217 -AYKGIGLGFEFLRHIRRTKVLIHVIDVNGFDGRDPYENYKIINNELKKYSKHLAKKHVI 275 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 ++LNKID LEQ + K + ++K F SA G+G D +L + L P +S Sbjct: 276 IVLNKIDSAVS---LEQIKNFKKHLKVKKLFETSAATGYGIDALLKEMLRMLE-KPVAFS 331 Query: 195 AD 196 + Sbjct: 332 TE 333 >gi|195952865|ref|YP_002121155.1| small GTP-binding protein [Hydrogenobaculum sp. Y04AAS1] gi|195932477|gb|ACG57177.1| small GTP-binding protein [Hydrogenobaculum sp. Y04AAS1] Length = 429 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E DF++ ++ VG N+GKS+L+N + IV++ TTR V S + Sbjct: 167 EKADFIK-------LSFVGKPNSGKSSLLNSILKQDRVIVSNIAGTTRDAVDVEFSYEGK 219 Query: 71 QIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + +DT GI N + S I+ +D+ LV+D+ + L + Sbjct: 220 DFILVDTAGIRRPSNIDYGVEFFAVNRSLEAIEKSDVCALVIDATEGVSRQDMRLASLVN 279 Query: 128 KRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKG 172 ++ LI++LNKID +K E L + + + V+ VSA +G Sbjct: 280 RKGKGLIVVLNKIDLIKDIEALKKHVDKKLEFVYFAPRVYVSAKEG 325 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 6/162 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G N GKSTL N+ ++SIV + TR ++ ++ +DT G+ ++K Sbjct: 4 IVITGRANVGKSTLFNKISKRRISIVENIPGITRDVIESKAVFQDKVFKLVDTGGLTDSK 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + K A + VVD L D+ K + ++ + +NK D K Sbjct: 64 EEISQAIRDKVLKLYKEAYKIIFVVDGKTGLMPEDKDIAKLLYPYKEKVYVAVNKTDSKK 123 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 A +L F + F +SAT G G ++L + L Sbjct: 124 A-----SASEFYELGF-DNVFEISATHGTGVFELLEEITKDL 159 >gi|122700903|emb|CAL88040.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G ++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIGAVLNALNL 168 >gi|17826782|emb|CAD18957.1| GTP-binding protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILRALNL 168 >gi|15889576|ref|NP_355257.1| GTP-binding protein EngA [Agrobacterium tumefaciens str. C58] gi|26006719|sp|Q8UD28|DER_AGRT5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15157462|gb|AAK88042.1| GTP-binding protein [Agrobacterium tumefaciens str. C58] Length = 476 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 22/176 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G NAGKSTL+NRF+G + + TR + + I DT G+ Sbjct: 207 VAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRKA 266 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + KL + S +I+ A+ V +V DS + L+ + + +L NK D Sbjct: 267 KVTEKLEKLSVADSLRSIRFAETVVIVFDSTIPFEKQDLQLVDLVIREGRAAVLAFNKWD 326 Query: 142 CV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 V K ERLL QA + +S G+G D ++ + T Sbjct: 327 LVEDPQAYLADLREKTERLLPQARGI-------RAVPMSGQTGYGLDRLMQSIIDT 375 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL NR VG K+++V TR G + + +DT G+ + Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLIDLRFTIIDTAGLEQS 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++ M + + I AD+ V+D+ L L + + +R ++L+ NK Sbjct: 64 GPETLQGRMWAQTEAAIDEADVTLFVIDAKAGLTPADETLGEMLRRRGKPVVLVANK 120 >gi|89075984|ref|ZP_01162356.1| putative GTP-binding protein HflX [Photobacterium sp. SKA34] gi|89048333|gb|EAR53912.1| putative GTP-binding protein HflX [Photobacterium sp. SKA34] Length = 429 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TISLVGYTNAGKSTLFNRITDAGVYAADQLFATLDPTLRKIAVADVGTAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + AD++ VVD+ RE + +L+EI ++I+ Sbjct: 257 RHLPHDLVAAFKATLKETQEADLLLHVVDASDDRFRENVEAVETVLEEIDAGEVPTLIIM 316 Query: 138 NKIDCVKPERLLEQAE--IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID LE AE IA + + VSA +G G D + L L Sbjct: 317 NKIDN------LEHAEPRIARDEEGVPRRVWVSAMEGQGIDLLFQALTERL 361 >gi|315123111|ref|YP_004065117.1| GTP-binding protein EngA [Pseudoalteromonas sp. SM9913] gi|315016872|gb|ADT70209.1| GTP-binding protein EngA [Pseudoalteromonas sp. SM9913] Length = 489 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 57/123 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI + Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGFEFIVVDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ + V + + K+ + ++ NK D + Sbjct: 64 EEGIETEMADQSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQEKKCFVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G IV TTR + ++ + + + +DT G+ K Sbjct: 204 LAIIGRPNVGKSTLTNRILGEDRVIVYDMPGTTRDSIYIPMTRNDKEYILIDTAGVRKRK 263 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK-- 139 D K + + I+ ++V LVVD+ + LL L++ +NK Sbjct: 264 KVSDVVEKFSVIKTLQAIEDCNVVLLVVDARDGISDQDLSLLGFALNSGRSLVIAVNKWD 323 Query: 140 -IDCVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 +D +R+ + E+ +L FI+ + +SA G G Sbjct: 324 GLDNYVKDRI--KTELDRRLGFIDFARLHFISALHGTGV 360 >gi|284049397|ref|YP_003399736.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM 20731] gi|283953618|gb|ADB48421.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM 20731] Length = 457 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+L+N + A +IV++ TTR I+ ++ +V DT G+ + D Sbjct: 223 AIVGRPNVGKSSLLNSLLQADRAIVSNIPGTTRDIIEEQMTIGGIPLVLTDTAGLRDTSD 282 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + S + ++ A + +V+D + L LL+ + R +LIL+ NK D Sbjct: 283 LVEKIGVERSRAALEDAQLALVVLDGSQPLDPEDRQLLESLRDR-KKLILV-NKAD 336 >gi|227547248|ref|ZP_03977297.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212207|gb|EEI80103.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 709 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 333 DVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L AE + + + + +SA G G D+L+ L A Sbjct: 393 QASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALDKLKQA 435 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IV+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + + ++ ++L+ N Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDAM 571 >gi|195999388|ref|XP_002109562.1| hypothetical protein TRIADDRAFT_53723 [Trichoplax adhaerens] gi|190587686|gb|EDV27728.1| hypothetical protein TRIADDRAFT_53723 [Trichoplax adhaerens] Length = 494 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V + G N GKS+L+N +IV+ TTR +V V+ ++F DT G Sbjct: 231 RSGVNVVIAGPPNVGKSSLLNLLCQRPAAIVSPLEGTTRDVVETAVNIGGYPVLFSDTAG 290 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK--------EIAKRSS 131 I + D K I+ + S I AD V +V D + V+I LL+ + + +S Sbjct: 291 IRQSIDPVEKEGIKRAKSKISAADFVLIVHDLSKYKHVDIDGLLESPLRMLNTNVDESTS 350 Query: 132 -------RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 ++ILNK D + ++ E N ++S G G +D +N L Sbjct: 351 ADFDENIEYLMILNKADLITNNLAVQMKEAFNTKGV--NACIISCETGDGIEDFINILSQ 408 Query: 185 TL 186 + Sbjct: 409 KM 410 >gi|167768008|ref|ZP_02440061.1| hypothetical protein CLOSS21_02551 [Clostridium sp. SS2/1] gi|317498398|ref|ZP_07956693.1| ribosome-associated GTPase EngA [Lachnospiraceae bacterium 5_1_63FAA] gi|167710337|gb|EDS20916.1| hypothetical protein CLOSS21_02551 [Clostridium sp. SS2/1] gi|291561010|emb|CBL39810.1| ribosome-associated GTPase EngA [butyrate-producing bacterium SSC/2] gi|316894292|gb|EFV16479.1| ribosome-associated GTPase EngA [Lachnospiraceae bacterium 5_1_63FAA] Length = 440 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G NAGKS+L+N+ +G IV+ TTR + V + VF+DT G+ Sbjct: 180 VAIIGKPNAGKSSLINKLLGEDRLIVSDIAGTTRDAIDTTVKRNGKEYVFIDTAGLRKKA 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + + ++ D+ LV+D+ + + +R +I+ +NK D Sbjct: 240 RVKEDIERYSVIRTVAAVERCDVAILVIDAEEGITEQDAKIAGIAHERGKGMIIAVNKWD 299 Query: 142 CVK 144 ++ Sbjct: 300 LIE 302 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL N G K+SIV TR + V+ Q +DT GI Sbjct: 6 IAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVTWLNYQFTLIDTGGI--EP 63 Query: 85 DSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 DS L+ + ++ AD++ + D + L V+ + ++ +RS + ++L +NK+ Sbjct: 64 DSGDLLLSHMRGQAEIAMETADVIIFLTDVRQGL-VDADYQVADMLRRSGKPIVLAVNKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D + + +L+ E N + + F VSA G D+L+ Sbjct: 123 DNYE-KFVLDTYEFYN--LGLGTPFPVSANSKIGFGDLLD 159 >gi|148255174|ref|YP_001239759.1| GTP-binding protein EngA [Bradyrhizobium sp. BTAi1] gi|166224309|sp|A5EI59|DER_BRASB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146407347|gb|ABQ35853.1| GTP-binding protein, essential for cell growth [Bradyrhizobium sp. BTAi1] Length = 456 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL NR VG K+++V TR G + Q +DT G+ Sbjct: 4 TIAIIGRPNVGKSTLFNRLVGQKLALVDDMPGVTRDRREGEAKLGDLQFTIIDTAGLDGG 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K S M + + I AD + V+D+ L + A+R+ + +L+L NK + Sbjct: 64 PKGSLTARMQEQTETAIALADALFFVIDARAGL-TPADRTFADFARRADKPVLLLANKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + + + + +SA G G ++ + L +P Sbjct: 123 G----KHGELGAMESYALGLGDPIQISAEHGEGMGELYDALRGLVP 164 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 10/142 (7%) Query: 10 NEHKDFVQDNS-RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 +EH++ ++ + R VA+VG NAGKSTL+N +G + + + + TTR + + K Sbjct: 171 DEHEETDEERAARPIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEIEYK 230 Query: 69 ESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 DT G+ ++ KL + + ++ A++V L++D+ E + I DL Sbjct: 231 GRGFRIFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFEEQDLRIADL 290 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 I + L++ +NK D ++ Sbjct: 291 ---IEREGRALVIAVNKWDLME 309 >gi|145590262|ref|YP_001156859.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|205415793|sp|A4T0N1|MNME_POLSQ RecName: Full=tRNA modification GTPase mnmE gi|145048668|gb|ABP35295.1| tRNA modification GTPase trmE [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 457 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 14/154 (9%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L GA N GKS+L+NR G +V+IVT TTR V+ + + + +DT G+ D Sbjct: 225 LAGAPNVGKSSLLNRLAGEEVAIVTPIAGTTRDRVKESIQIEGVPMHIIDTAGLRKTVDE 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE--IAKRSSR--LILILNKIDC 142 I +W I+ AD+V + + E H+ L+E + ++ ++ ++NK D Sbjct: 285 VEAKGIERTWEAIRLADLVIFLGAPNAEPG---HESLREEILGALPAKCPILDVINKSDL 341 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 ++ + + A+ L ++SA G G D Sbjct: 342 IEGGLAVSSSNEASPL-------LISAKTGAGID 368 >gi|320527161|ref|ZP_08028348.1| tRNA modification GTPase TrmE [Solobacterium moorei F0204] gi|320132489|gb|EFW25032.1| tRNA modification GTPase TrmE [Solobacterium moorei F0204] Length = 459 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + +IVT TTR +V G V + +DT GI + D+ Sbjct: 240 ILGRPNVGKSSLLNALLEEDKAIVTDVAGTTRDLVEGTVRLSGITLNLIDTAGIRKSDDA 299 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ I S ++ A +V +V+D EL +LL E K +R I++ NK D Sbjct: 300 IEQIGITKSLQALEKAQLVIVVLDGSEELTEEDQELL-EKTKNYNR-IVVYNKKD 352 >gi|237725197|ref|ZP_04555678.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229436463|gb|EEO46540.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 396 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 21/171 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL G N+GKS+L+N G ++V+ TT ++ + + + +F+DTPG F+ Sbjct: 14 VALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVV--DSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + ++ I + I+ DI L+ ++H E K +K++ +++ +IL+LNK D Sbjct: 73 EGELGEMRIIRTLKAIEQTDIALLLCEDEAHEEEK----KWMKQLEEKNIPVILLLNKAD 128 Query: 142 CVKPERLLEQAEIANKLVFIE-----KTFMVSATKGHGCDDVLNYLCSTLP 187 K +IA+ L+ IE K ++SA + G + + LP Sbjct: 129 IRK--------DIASTLLRIEKDCGQKPLVISAKERTGIKKIHQAILEKLP 171 >gi|209521123|ref|ZP_03269851.1| small GTP-binding protein [Burkholderia sp. H160] gi|209498433|gb|EDZ98560.1| small GTP-binding protein [Burkholderia sp. H160] Length = 445 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 15/163 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRAGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILILNK 139 AKD M R + ++ +D+V +VD L +I D L+++ + + L++NK Sbjct: 64 AKDGILHEMARQTRQAVEESDVVVFIVDGRNGLAPQDKSIADYLRKVGR---PIFLVVNK 120 Query: 140 IDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 + +K A +A + + +SA G G D++N Sbjct: 121 AEGMK------YANVAADFYELGLGDPRAISAAHGDGVTDMIN 157 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 13/181 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R +A+VG N GKSTL+N VG + I TTR + +DT G Sbjct: 177 ARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAG 236 Query: 80 IFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + ++ K + + +I A++V L++D+ +++ + + ++ L++ Sbjct: 237 LRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDAHIAGFVVEQGRALVVG 296 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLCSTL 186 +NK D + P R +A++ KL F++ K +SA + G DD S L Sbjct: 297 VNKWDGLDPHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYTAAMSKL 356 Query: 187 P 187 P Sbjct: 357 P 357 >gi|122702731|emb|CAL88555.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLDL 168 >gi|122701619|emb|CAL88199.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGTPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702275|emb|CAL88328.1| GTPase [Helicobacter pylori] Length = 168 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 64 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD++ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKLIPSDEDIK-----LFREVFKINPNCFLVI 119 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 120 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALNL 166 >gi|122702135|emb|CAL88258.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFFSFG-----MPKSFNISVSHNRGISALIDAILNALDL 168 >gi|312890129|ref|ZP_07749672.1| ribosome-associated GTPase EngA [Mucilaginibacter paludis DSM 18603] gi|311297406|gb|EFQ74532.1| ribosome-associated GTPase EngA [Mucilaginibacter paludis DSM 18603] Length = 433 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 15/175 (8%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKSTL NR + A+ +IV TR G+ +DT G + Sbjct: 2 SNIVAIVGRPNVGKSTLFNRLIEARKAIVDDFSGVTRDRHYGVSEWTGHDFTVIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSRLILIL 137 N+ D + + I+ A ++ +VD + I DL EIA ++S + + ++ Sbjct: 62 ANSDDVFEAAIREQVIIAIEEASVILFMVD----VTTGITDLDDEIATFLRKSKKPVFVV 117 Query: 138 -NKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK+D +Q E A F + + +SA G G ++L+ + T P Sbjct: 118 SNKVDNNS-----QQVESATFYGFGLGDIYNISAMTGSGTGELLDEVVKTFEDVP 167 Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 + G N GKS+++N +G +IVT TTR + ++ + +DT G+ Sbjct: 177 TIAGRPNVGKSSIINTLLGHDRNIVTPIAGTTRDSIHIHYNQFGHDFMLIDTAGMRKKTK 236 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K++ + + I+ +D+V L++D+ ++ ++ K +++++NK D Sbjct: 237 VKENIEFYSVMRTIKAIEESDVVILMIDAVEGIEAQDVNIFHLAEKNKKGIVIVVNKWDL 296 Query: 143 VK 144 ++ Sbjct: 297 IE 298 >gi|168181770|ref|ZP_02616434.1| GTP-binding protein [Clostridium botulinum Bf] gi|237796536|ref|YP_002864088.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657] gi|182674964|gb|EDT86925.1| GTP-binding protein [Clostridium botulinum Bf] gi|229262062|gb|ACQ53095.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657] Length = 594 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 27/210 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ---------TTRSIVRGIVSEKESQIVFL 75 V+LVG TNAGKSTL N+ ++ +K + T + R I I Sbjct: 364 VSLVGYTNAGKSTLRNKLCDTGIASAQNKEKVFEADMLFATLDTTTRAISLPNNEIITLT 423 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 DT G + H+L+ + + + ++D++ V+D + ++++ ++++LKE+ Sbjct: 424 DTVGF--VRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIEA-VNNVLKELGT 480 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + +IL+ NKID V E+L + FIE +SA G +D+L + TLP Sbjct: 481 ENKPIILVFNKIDKVSMEKLNYFRDKFKDEKFIE----ISARLGINLEDLLKIIEKTLPY 536 Query: 189 ----APWVYSADQISDLPMFHFTAEITREK 214 A ++ D+ + H ++I E+ Sbjct: 537 KVSEAEYIIPYDKQKAVAFLHRNSKIIEEE 566 >gi|161528192|ref|YP_001582018.1| small GTP-binding protein [Nitrosopumilus maritimus SCM1] gi|160339493|gb|ABX12580.1| small GTP-binding protein [Nitrosopumilus maritimus SCM1] Length = 369 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 8/107 (7%) Query: 18 DNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 D R+G V +G + GKSTL+NR GAK ++ + TT ++V G++ + ++I L Sbjct: 57 DVRRTGDATVVFIGLPSVGKSTLLNRLTGAKSAVGAFQF-TTLTVVPGMMEYRGAKIQVL 115 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVN 118 D PGI + L R+ S + AD+V LV+D H ++ VN Sbjct: 116 DLPGIIKGASTGKGLGKRI-LSVARTADLVLLVLDVFQPYHEDVLVN 161 >gi|122702485|emb|CAL88433.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALNL 168 >gi|122702147|emb|CAL88264.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLNL 168 >gi|46191061|ref|ZP_00120704.2| COG2262: GTPases [Bifidobacterium longum DJO10A] gi|189439027|ref|YP_001954108.1| GTPase [Bifidobacterium longum DJO10A] gi|312132467|ref|YP_003999806.1| hflx [Bifidobacterium longum subsp. longum BBMN68] gi|189427462|gb|ACD97610.1| GTPase [Bifidobacterium longum DJO10A] gi|311773394|gb|ADQ02882.1| HflX [Bifidobacterium longum subsp. longum BBMN68] Length = 501 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L NR G+ + T + VR + ++DT G Sbjct: 282 TVAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRR 341 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE--LKVN-IHDLLKEIAKRSS-RLILILN 138 + + + + AD++ VVD SH + +V+ ++D+L +I +S IL+ N Sbjct: 342 LPTQLVEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFN 401 Query: 139 KIDCVKPERLLEQAEIANK---LVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K D QA+ A + F+VSA G G D++ + S LP+ Sbjct: 402 KAD---------QADEATRERLAALQPDAFIVSAYTGEGLDELRTAVESLLPV 445 >gi|242255956|gb|ACS88962.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 19/170 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID K ER + K+F +S + G +++ + S L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLSAL 166 >gi|242255900|gb|ACS88934.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLDL 168 >gi|212715828|ref|ZP_03323956.1| hypothetical protein BIFCAT_00729 [Bifidobacterium catenulatum DSM 16992] gi|212661195|gb|EEB21770.1| hypothetical protein BIFCAT_00729 [Bifidobacterium catenulatum DSM 16992] Length = 709 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + ++ AD V LVVD L ++K + + L +NK+D Sbjct: 333 DVEGIESAIASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRSSGKPVTLAVNKVDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + E L AE + + + + +SA G G ++L+ +L A Sbjct: 393 RESEYL--TAEFWK--MGLGEPYGISAMHGRGIGELLDAALESLKKA 435 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V +V+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ D+ + + ++ + ++L+ N Sbjct: 507 RRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDLM 571 >gi|149370691|ref|ZP_01890380.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49] gi|149356242|gb|EDM44799.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49] Length = 465 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 12/159 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + ++ F+DT GI + Sbjct: 223 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELNIGGIAFRFIDTAGIRDTS 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-----LILILNK 139 D+ L I+ ++ ++ A +V ++ + + L+ + EI K ++ L++++NK Sbjct: 283 DTIEGLGIKKTFEKMEQAQVVLFLIAATQLLQDKTATQI-EIEKIKNKHPQKTLVMVVNK 341 Query: 140 IDCVKPERLLEQAEI--ANKLVFIEKTFMVSATKGHGCD 176 ID ++ +++ E I K V I +SA G G + Sbjct: 342 IDQIQTKQISEVKNIHLPQKTVLIP----ISAKTGEGVE 376 >gi|90424082|ref|YP_532452.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris BisB18] gi|90106096|gb|ABD88133.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris BisB18] Length = 461 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 23/236 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A+V T +R + + + DT G + Sbjct: 227 VVALVGYTNAGKSTLFNRLTRAEVQAADMLFATLDPTLRALTLPHGGKAMLSDTVGFISN 286 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEI-----AKRSSRLI 134 + R + + AD++ V D +H + D +L+++ A R+I Sbjct: 287 LPTQLVAAFRATLEEVLEADLILHVRDIAHEDADAQQDDVAAVLRQLGIDPEAGGGGRII 346 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL-----NYLCSTLPLA 189 + NKID + L IA + +VSA G G D +L + + L Sbjct: 347 EVWNKIDRFAADELANLRNIAARRDPEHPCLLVSAVTGEGIDALLLAIEDRLAAARITLD 406 Query: 190 PWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 + +AD + + H AE+ L KE+ V+T + + K +++ R Sbjct: 407 LSIDAADG-AGVSWLHRNAEV--------LEKELEDGRFVMTVRVDPTKRDTVISR 453 >gi|227547539|ref|ZP_03977588.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621149|ref|ZP_04664180.1| GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|227211949|gb|EEI79845.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515610|gb|EEQ55477.1| GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 501 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L NR G+ + T + VR + ++DT G Sbjct: 282 TVAVVGYTNAGKSSLTNRLTGSAELVGNALFATLDTAVRRAKTRDGRAYAYVDTVGFVRR 341 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE--LKVN-IHDLLKEIAKRSS-RLILILN 138 + + + + AD++ VVD SH + +V+ ++D+L +I +S IL+ N Sbjct: 342 LPTQLVEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFN 401 Query: 139 KIDCVKPERLLEQAEIANK---LVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K D QA+ A + F+VSA G G D++ + S LP+ Sbjct: 402 KAD---------QADEATRERLAALQPDAFIVSAYTGEGLDELRTAVESLLPV 445 >gi|205829067|sp|A1WDB4|MNME_ACISJ RecName: Full=tRNA modification GTPase mnmE Length = 466 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 226 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESD 285 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 D ++ I +W I AD V + D R Sbjct: 286 DEVERIGIARAWDEIAGADAVLFLHDLTR 314 >gi|122702433|emb|CAL88407.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAILNALNL 168 >gi|122702265|emb|CAL88323.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLDALNL 168 >gi|122701431|emb|CAL88105.1| GTPase [Helicobacter pylori] gi|122701437|emb|CAL88108.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLNL 168 >gi|157804128|ref|YP_001492677.1| tRNA modification GTPase TrmE [Rickettsia canadensis str. McKiel] gi|166234816|sp|A8EZV9|MNME_RICCK RecName: Full=tRNA modification GTPase mnmE gi|157785391|gb|ABV73892.1| tRNA modification GTPase [Rickettsia canadensis str. McKiel] Length = 445 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 19/157 (12%) Query: 7 TFFNEHKDFVQDNSR-----SGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 NE +++ DN R SG +A++G NAGKS+L+N + ++IV++ TTR I Sbjct: 194 NLINEISNYLNDNRRGELLNSGLKLAIIGPPNAGKSSLLNFLMQRDIAIVSNIAGTTRDI 253 Query: 61 VRGIVSEKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELK 116 + G + I+ DT GI + D + I+ + ++ K ADI ++ D+ + + Sbjct: 254 IEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKIIMFDAEKLDSSIN 313 Query: 117 VNIHDLLKE---------IAKRSSRLILILNKIDCVK 144 I DL+ E S++ LI +K C++ Sbjct: 314 EGIIDLIDENTIIIINKIDLIEPSKIFLIEDKYKCLR 350 >gi|18075555|emb|CAD11173.1| GTP-binding protein [Helicobacter pylori] gi|122702821|emb|CAL88600.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKTLNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|23465868|ref|NP_696471.1| GTP-binding protein [Bifidobacterium longum NCC2705] gi|23326569|gb|AAN25107.1| GTP-binding protein [Bifidobacterium longum NCC2705] Length = 501 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L NR G+ + T + VR + ++DT G Sbjct: 282 TVAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRR 341 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE--LKVN-IHDLLKEIAKRSS-RLILILN 138 + + + + AD++ VVD SH + +V+ ++D+L +I +S IL+ N Sbjct: 342 LPTQLVEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFN 401 Query: 139 KIDCVKPERLLEQAEIANK---LVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K D QA+ A + F+VSA G G D++ + S LP+ Sbjct: 402 KAD---------QADEATRERLAALQPDAFIVSAYTGEGLDELRTAVESLLPV 445 >gi|322689198|ref|YP_004208932.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] gi|320460534|dbj|BAJ71154.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] Length = 709 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 333 DVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L AE + + + + +SA G G D+L+ L A Sbjct: 393 QASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALDKLKQA 435 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IV+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + + ++ ++L+ N Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDAM 571 >gi|313206833|ref|YP_004046010.1| ribosome-associated GTPase enga [Riemerella anatipestifer DSM 15868] gi|312446149|gb|ADQ82504.1| ribosome-associated GTPase EngA [Riemerella anatipestifer DSM 15868] gi|315023907|gb|EFT36909.1| GTP-binding protein EngA [Riemerella anatipestifer RA-YM] gi|325335727|gb|ADZ12001.1| Predicted GTPase [Riemerella anatipestifer RA-GD] Length = 435 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 24/190 (12%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-- 79 S VA+VG N GKSTL NR + + +IV TR G + +DT G Sbjct: 2 SNIVAIVGRPNVGKSTLFNRLLERREAIVDSVAGVTRDRHYGKSEWNGVEFTVIDTGGYD 61 Query: 80 -----IFNAKDSYH-KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 IF + + +L + + S I ++ + D+ +E IH+LL +RS++ Sbjct: 62 VGTDDIFEEEIRHQVQLAVDEATSIIFMLNVEEGLTDTDQE----IHELL----RRSNKP 113 Query: 134 I-LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 I +++NK+D K E L E + IEK + +S+ G G D+L+ + + P + Sbjct: 114 IYIVVNKVDSAKEE--LPATEFYQ--LGIEKYYTLSSATGSGTGDLLDAVVADFPTTEY- 168 Query: 193 YSADQISDLP 202 D LP Sbjct: 169 --KDPFDGLP 176 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G N GKSTL N + K +IVT TTR + I ++ + V +DT G+ Sbjct: 178 ITIAGRPNVGKSTLTNALLDNKRNIVTDIAGTTRDSIETIYNKFGHEFVLVDTAGMRKKS 237 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 L + S I+H+D+V ++VD+ + + ++ K +++++NK D Sbjct: 238 KVSENLEFYSVMRSVRAIEHSDVVVIMVDATQGWESQDMNIFGIAQKNRKGIVILVNKWD 297 Query: 142 CVKPE 146 V+ E Sbjct: 298 LVEKE 302 >gi|240949663|ref|ZP_04753998.1| GTP-binding protein EngA [Actinobacillus minor NM305] gi|240295921|gb|EER46597.1| GTP-binding protein EngA [Actinobacillus minor NM305] Length = 510 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 +A+VG N GKSTL NR +G + +V TTR + I E++ Q +DT G+ Sbjct: 224 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIY-IPMERDGQHYTIIDTAGVRRR 282 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 283 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKW 342 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ Y C+T Sbjct: 343 DGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFESVKEAYACAT 395 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 12/218 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIGGYDFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC----DDVLNYLCSTLPLAPWVYSADQIS 199 + AE + + + ++A +G G + VL L L + V + D+ + Sbjct: 124 DADSHC--AEFYQ--LGLGEVEQIAAAQGRGVTQLIEQVLAPLAEELGGSQAVENEDEFA 179 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK 237 D H E T+++ E + ++ E EE+ Sbjct: 180 D----HEENETTQDEWDRDFDFENEEDAALLDEALEEE 213 >gi|239621484|ref|ZP_04664515.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515945|gb|EEQ55812.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 698 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 262 GVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 321 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 322 DVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDD 381 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L AE + + + + +SA G G D+L+ L A Sbjct: 382 QASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALDKLKQA 424 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IV+ +F+DT GI K Sbjct: 439 VALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAGI---K 495 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + + ++ ++L+ N Sbjct: 496 RRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLVFN 555 Query: 139 KIDCV 143 K D + Sbjct: 556 KWDAM 560 >gi|332300821|ref|YP_004442742.1| tRNA modification GTPase mnmE [Porphyromonas asaccharolytica DSM 20707] gi|332177884|gb|AEE13574.1| tRNA modification GTPase mnmE [Porphyromonas asaccharolytica DSM 20707] Length = 470 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 A++GA N GKS+L+N + + +IV+ TTR V G ++ + + +DT G+ Sbjct: 219 TAIIGAPNVGKSSLLNALLQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTT 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVV----DSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D +L I S+ I A ++ V+ + EL+ + ++L+ + S L+L+LNK Sbjct: 279 DLVEQLGIERSYQQISSARLILWVIAPPLPTWDELEAQLSEILR-LTSPESTLMLLLNKR 337 Query: 141 DCV 143 D + Sbjct: 338 DLL 340 >gi|296393716|ref|YP_003658600.1| ribosome-associated GTPase EngA [Segniliparus rotundus DSM 44985] gi|296180863|gb|ADG97769.1| ribosome-associated GTPase EngA [Segniliparus rotundus DSM 44985] Length = 450 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNRFVG + ++V TR V + DT G Sbjct: 13 VIAIVGRPNVGKSTLVNRFVGRRAAVVEDVPGVTRDRVSYDAEWGGRSFLVQDTGGWEPD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + AD++ LVVD+ L K + + + L+ NK D Sbjct: 73 ATGIGLSIAQQAELAMATADVILLVVDAQAGATGVDEALAKSLRRSKKPVFLVGNKSD-- 130 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ +E + + + + VSA G G D+L+ +P Sbjct: 131 NPQ--IENESSGLWSLGLGRPYPVSALHGKGSGDLLDAALEAVP 172 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 + R VALVG N GKS+L+N+ G S+V TT V +++ + F+DT Sbjct: 180 EGPRPRRVALVGRPNVGKSSLINKLSGENRSVVDSVAGTTVDPVDSLIALDGEEWQFVDT 239 Query: 78 PGIFN--AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ + S H+ + + S I+ A++V +++D+ L + + + ++ Sbjct: 240 AGLRRKVGQASGHEFYAAVRTKSAIEAAEVVIVLIDASVPLTEQDQRVFGMVGEAGRAMV 299 Query: 135 LILNKIDCVKPER 147 + NK D V +R Sbjct: 300 IACNKWDLVDEDR 312 >gi|288554601|ref|YP_003426536.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4] gi|288545761|gb|ADC49644.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4] Length = 456 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N V + +IVT TTR ++ V+ + + +DT GI +D Sbjct: 223 IVGRPNVGKSSLLNSLVHEEKAIVTDIAGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDM 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ + S +K A+++ LV++ EL L + A + +I+I+NK D Sbjct: 283 VERIGVERSRQVLKEAELILLVLNYGEELSSEDEALFE--AVKHLNVIVIVNKTDV 336 >gi|282902629|ref|ZP_06310522.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C160] gi|282597088|gb|EFC02047.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C160] Length = 459 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD++ V++++ L + L + + ++ +I+I+NK Sbjct: 279 IRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNK 336 Query: 140 IDC 142 +D Sbjct: 337 MDL 339 >gi|256832283|ref|YP_003161010.1| GTP-binding proten HflX [Jonesia denitrificans DSM 20603] gi|256685814|gb|ACV08707.1| GTP-binding proten HflX [Jonesia denitrificans DSM 20603] Length = 509 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 84/206 (40%), Gaps = 26/206 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L+N GA V + T VR + DT G Sbjct: 288 AVAIVGYTNAGKSSLLNALTGAGVLVQNALFATLDPTVRRTKTPDGRVYTLADTVGFV-- 345 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSS-RLILI 136 + H+L+ R + ADI+ VVD +H + I +L +I S I++ Sbjct: 346 RHLPHQLVEAFRSTLEETADADIIVHVVDGAHPDPAGQIAAVRTVLADIDGVSDIPEIIV 405 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 +NK D PE IA + VSA G G +++L ++ LP AP V Sbjct: 406 VNKADIAPPE------AIAQIRSMERDVWAVSAHTGAGIEELLGHIADILP-APGVE--- 455 Query: 197 QISDLPMFHFTAEITREKLFLHLHKE 222 H T R L +H E Sbjct: 456 -------IHLTVPYHRGDLLSRMHAE 474 >gi|254521460|ref|ZP_05133515.1| GTP-binding protein [Stenotrophomonas sp. SKA14] gi|219719051|gb|EED37576.1| GTP-binding protein [Stenotrophomonas sp. SKA14] Length = 465 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKST+ N + ++V + TR G+ ++++ + +DT GI Sbjct: 4 LVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVVDTGGIAE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ R + + AD++ VVD+ ++L + K S +L++NKID Sbjct: 64 EEEGLAGATTRQARAAAAEADLILFVVDAREGTSAMDDEILAWLRKLSRPTLLLINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + ++E A + F E VSA G DD+L+ + LP Sbjct: 124 TDEDSV--RSEFA-RYGFGE-MLTVSAAHRQGLDDLLDEVIQRLP 164 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + + +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRILGEERMIASDVPGTTRDSIAVDLERDGREYRLIDTAGLRRRS 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + +I+ + L++D+ + +L + L++ +NK D Sbjct: 241 RVDEVVEKFSVVKTMQSIEQCQVAVLMLDATEGVTDQDATVLGAVLDAGRALVIAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFI--EKTFMVSATKGHGCDDVL 179 + E EQAE ++ KL F+ ++ +SA G G ++ Sbjct: 301 GLT-EYQREQAETLLSLKLGFVPWAESVRISAKHGSGLRELF 341 >gi|150003043|ref|YP_001297787.1| GTP-binding protein EngA [Bacteroides vulgatus ATCC 8482] gi|254883681|ref|ZP_05256391.1| GTP-binding protein engA [Bacteroides sp. 4_3_47FAA] gi|294775667|ref|ZP_06741175.1| ribosome-associated GTPase EngA [Bacteroides vulgatus PC510] gi|319642181|ref|ZP_07996841.1| GTP-binding protein engA [Bacteroides sp. 3_1_40A] gi|166224306|sp|A6KXK1|DER_BACV8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149931467|gb|ABR38165.1| putative phosphoglycerate dehydrogenase [Bacteroides vulgatus ATCC 8482] gi|254836474|gb|EET16783.1| GTP-binding protein engA [Bacteroides sp. 4_3_47FAA] gi|294450511|gb|EFG19003.1| ribosome-associated GTPase EngA [Bacteroides vulgatus PC510] gi|317386167|gb|EFV67086.1| GTP-binding protein engA [Bacteroides sp. 3_1_40A] Length = 437 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN--- 82 A+VG NAGKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKKNK 238 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++D + +IR S +I+++D+ L++D+ R ++ ++ I + L++++NK D Sbjct: 239 VSEDLEYYSVIR-SIRSIENSDVCILMLDATRGIEGQDLNIFSLIQRNQKGLVVVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 LVE 300 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 11/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR + +IV + TTR G + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + + + + I AD++ VVD +L + + +L+ K +I++ NK Sbjct: 65 DDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKK---PVIMVANKT 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 D E AE + + + +SA G G ++L+ + Sbjct: 122 D--NNELQYNAAEFYK--LGLGDPYCISALSGSGTGELLDLVVG 161 >gi|122701541|emb|CAL88160.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122700841|emb|CAL88009.1| GTPase [Helicobacter pylori] gi|122701461|emb|CAL88120.1| GTPase [Helicobacter pylori] gi|122702239|emb|CAL88310.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122700847|emb|CAL88012.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|299144092|ref|ZP_07037172.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518577|gb|EFI42316.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 439 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 10/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +G N GKS+L+NR +G + IVT TTR + + VF+DT G+ K Sbjct: 178 VTFIGKPNVGKSSLINRILGEERVIVTDIPGTTRDAIDSKFNFNGENYVFVDTAGLRKKK 237 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 Y + +IR + + I+ A + LV+D++ + ++ + +I+ +NK Sbjct: 238 KIYENIERYSVIR-TLTAIERASVCVLVIDAYEGVSEQDSKIVGYAHDNNKAIIVAVNKW 296 Query: 141 DCVKPERLLE---QAEIANKLVFIEKT--FMVSATKGHGCDDVL 179 D ++ + +++I +L FI +SA G D +L Sbjct: 297 DLIEKDNSTMKKFESDIRKRLPFINYAPILFISAQTGQRVDKLL 340 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 21/166 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+++G N GKSTL N+ VG K+SI TR + + Q + +DT G+ + Sbjct: 5 IVSIIGTPNVGKSTLFNKIVGKKISITEDTPGVTRDRIYSDATWLNKQFLLVDTGGL-DL 63 Query: 84 KD-----SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 KD S K + L+ + +D++ + D + + N ++ + K + ++IL +N Sbjct: 64 KDEDIFMSSIKAQVDLA---LDMSDVIIFLTDGIKGVSSNDLEISNYLRKSNKKIILAVN 120 Query: 139 KIDCVKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLN 180 K D + N F E +S+ +G G D+L+ Sbjct: 121 KFDSKDAKN--------NYYDFFELGLGTPITISSEQGSGVGDLLD 158 >gi|289641297|ref|ZP_06473463.1| small GTP-binding protein [Frankia symbiont of Datisca glomerata] gi|289508895|gb|EFD29828.1| small GTP-binding protein [Frankia symbiont of Datisca glomerata] Length = 457 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 12/176 (6%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R +A+VG N GKSTLVNR +G + ++V TR V + + V +DT Sbjct: 17 DDRQPVLAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDATWNGRRFVVVDTG 76 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSS-RLI 134 G + + + + AD V VVD+ V D + +A+ RS ++ Sbjct: 77 GWEPDARGLAARVAEQARAALDTADAVLFVVDT----TVGATDADEAVARVLHRSGLPVV 132 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L NK+D + E A + + + VS+ G G D+L+ + LP AP Sbjct: 133 LAANKVDDSRG----EADATALWSLGLGEPHPVSSLHGRGSGDLLDAILEALPPAP 184 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VAL+G N GKS+L+NR G + S+V TTR V +V+ F+DT G + Sbjct: 197 VALLGKPNVGKSSLLNRLAGTQRSLVHDVAGTTRDPVDELVTVGGETWKFVDTAGLRRRV 256 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A + + +R + + + L +D+ L ++ + + L+L NK Sbjct: 257 REASGAEYYSSLRTAAALEAAEVAIVL-LDASESLTEQDQRVITMVVEAGRALVLAFNKW 315 Query: 141 DCVKPERLLE-QAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D + +R L + EI L V VSA G D + L ++L Sbjct: 316 DLLDEDRRLTLEREIVRDLGRVAWAPRVNVSAATGRAVDRLAPALRTSL 364 >gi|291087651|ref|ZP_06347028.2| ribosome-associated GTPase EngA [Clostridium sp. M62/1] gi|291074566|gb|EFE11930.1| ribosome-associated GTPase EngA [Clostridium sp. M62/1] Length = 446 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS++VN+ +G IV++ TTR V + ++ VF+DT G+ Sbjct: 184 IAIVGKPNVGKSSIVNKLLGENRVIVSNIAGTTRDAVDTEIVHNGTEYVFIDTAGLRRKN 243 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +V+D+ + + R +I+++NK D Sbjct: 244 KIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQDAKIAGIAHDRGKGIIIVVNKWD 303 Query: 142 CVK 144 ++ Sbjct: 304 AIE 306 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + + + +DT GI + Sbjct: 9 VVAVVGCPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPD 68 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D M + I AD++ +VD + L + + + K +IL +NK+D Sbjct: 69 SRDIILAQMREQAEIAIATADVIIFIVDVRQGLTDSDSKVADMLRKSRKPVILAVNKVDS 128 >gi|298209078|ref|YP_003717257.1| putative tRNA modification GTPase [Croceibacter atlanticus HTCC2559] gi|83849005|gb|EAP86874.1| putative tRNA modification GTPase [Croceibacter atlanticus HTCC2559] Length = 469 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 7/126 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N + + +IV+ TTR + +S F+DT GI K Sbjct: 224 IAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETK 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSR-----LILIL 137 D L I+ ++ I+ + + + D+ + + I +L E+ K +R L++I Sbjct: 284 DVIEGLGIKKTFEKIEKSQVTVYLFDASLIKNDAIRIKNLKVEVEKIKNRFPQKPLLVIA 343 Query: 138 NKIDCV 143 NKID + Sbjct: 344 NKIDAL 349 >gi|291563224|emb|CBL42040.1| ribosome-associated GTPase EngA [butyrate-producing bacterium SS3/4] Length = 441 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 8/144 (5%) Query: 6 ITFFNE--HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 + +F E + D D R +A+VG N GKS+++N+ +G IV++ TTR V Sbjct: 162 VKYFREDQYDDSEDDRPR---IAIVGKPNVGKSSIINKLLGENRVIVSNIAGTTRDAVDT 218 Query: 64 IVSEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + ++ +F+DT G+ K+ + I + + ++ AD+V +V+D+ + Sbjct: 219 EIVRNGTEYIFIDTAGLRRKSKIKEDIERYSIIRTVTAVERADVVLMVIDAVEGITEQDA 278 Query: 121 DLLKEIAKRSSRLILILNKIDCVK 144 + R +I+++NK D ++ Sbjct: 279 KIAGIAHDRGKGVIVVVNKWDAIE 302 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G+ +SIV TR + + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNVLAGSTISIVKDTPGVTRDRIYADCTWLNNNFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD M + I AD++ +VD + L V+ + ++ ++S + ++L +NK+D Sbjct: 65 SKDIILAQMREQAQIAIDTADVIIFIVDVRQGL-VDADSKVADMLRKSKKPVVLAVNKVD 123 Query: 142 CV 143 + Sbjct: 124 SM 125 >gi|254518517|ref|ZP_05130573.1| GTP binding protein [Clostridium sp. 7_2_43FAA] gi|226912266|gb|EEH97467.1| GTP binding protein [Clostridium sp. 7_2_43FAA] Length = 598 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 22/179 (12%) Query: 25 VALVGATNAGKSTLVNRF--VGAKVSIVTHK--------VQTTRSIVRGIVSEKESQIVF 74 V+LVG TNAGKSTL N+ V A+ I + T R I+ + + + Sbjct: 366 VSLVGYTNAGKSTLRNKLCDVAAQKEIQGKEKVFEADMLFATLDITTRSIILKNKGVVTI 425 Query: 75 LDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAK 128 DT G + H L+ + + + ++D++C VVD+ + ++ + ++L+E+ Sbjct: 426 TDTVGF--VRKLPHDLVEAFKSTLEEVIYSDLLCHVVDTSSDSALDQIKAVEEVLEELGA 483 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + IL+LNKID E++ E + ++ IE +SA +G D++L+ + LP Sbjct: 484 KGKETILVLNKIDRATEEQVEEVKKACSEYKIIE----ISAKEGINLDNLLDLIEEKLP 538 >gi|122700863|emb|CAL88020.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR + + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|161524640|ref|YP_001579652.1| GTP-binding protein EngA [Burkholderia multivorans ATCC 17616] gi|189350604|ref|YP_001946232.1| GTP-binding protein EngA [Burkholderia multivorans ATCC 17616] gi|238687037|sp|A9AH00|DER_BURM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|160342069|gb|ABX15155.1| small GTP-binding protein [Burkholderia multivorans ATCC 17616] gi|189334626|dbj|BAG43696.1| GTP-binding protein [Burkholderia multivorans ATCC 17616] Length = 445 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 13/184 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D SR +A+VG N GKSTLVN +G I TTR + + +D Sbjct: 174 NDPSRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLID 233 Query: 77 TPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ + ++ K + + +I A++V L++D+ +++ + + ++ L Sbjct: 234 TAGLRRSGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDAHIAGFVVEQGRAL 293 Query: 134 ILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLC 183 ++ +NK D + R +A++ KL F++ K+ +SA K G DD Sbjct: 294 VIGVNKWDGLDEHARERAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAM 353 Query: 184 STLP 187 + LP Sbjct: 354 AKLP 357 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|50955206|ref|YP_062494.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951688|gb|AAT89389.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 489 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR A V + T + VR V+ DT G Sbjct: 272 SVAIAGYTNAGKSSLLNRVTKAGVLVENALFATLDATVRRSVTADGRLYTLADTVGFV-- 329 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIAKRSSRLILIL 137 ++ H+L+ R + + +D++ VVD SH + + D++ ++ R I++ Sbjct: 330 RNLPHQLVEAFRSTLEEVADSDVIVHVVDGSHPDPASQLATVRDVIGDVGARDIPEIVVF 389 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D + + L + +F SA G G ++VL + LP Sbjct: 390 NKADLIPEDERLVLRGLEPGAIF------ASARTGEGVEEVLAAIARLLP 433 >gi|317452835|emb|CBL87853.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|313837161|gb|EFS74875.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA2] gi|314927817|gb|EFS91648.1| GTP-binding protein HflX [Propionibacterium acnes HL044PA1] gi|314971934|gb|EFT16032.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA3] gi|328907281|gb|EGG27047.1| GTP-binding protein HflX [Propionibacterium sp. P08] Length = 483 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 18/191 (9%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E T ++ D V+ S+ VA+VG TNAGKS+L+NR A V + T R Sbjct: 247 ESTRASKRADRVR--SKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRT 304 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH---ADIVCLVVDSHRELKVN--- 118 + DT G + H L+ + ST++ AD++ VVD+ V Sbjct: 305 TTSDGRVYTLTDTVGFV--RHLPHDLVEAFA-STLEETAMADVLLHVVDAADPDPVGQVD 361 Query: 119 -IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 + +L I + +L+LNKID RL + A +A + F E ++VSA G G D+ Sbjct: 362 AVRAVLSGIGASAIPEVLVLNKID-----RLSDDAIVALRSTFPE-AYLVSAHTGEGTDE 415 Query: 178 VLNYLCSTLPL 188 ++ + + LP+ Sbjct: 416 LIEAVEADLPV 426 >gi|309775503|ref|ZP_07670503.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 3_1_53] gi|308916597|gb|EFP62337.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 3_1_53] Length = 173 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 6/167 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 +G VA+VG N GKST+ NR +G + SIV TR + G + +DT GI Sbjct: 3 NGIVAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTREFRVIDTGGIQ 62 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI- 140 A + + I AD + VV L + + + + + +IL +NK+ Sbjct: 63 LANQDFQTEINMQVEIAIDEADCIVFVVSGKDGLTHDDEYVARLLHRTKKPVILAVNKVD 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + + + E + + VS G G DVL+ + LP Sbjct: 123 DFAQNDAIYEFYSLG-----LGDPLAVSGAHGIGIGDVLDAIIHALP 164 >gi|257869556|ref|ZP_05649209.1| GTP-binding protein engA [Enterococcus gallinarum EG2] gi|257803720|gb|EEV32542.1| GTP-binding protein engA [Enterococcus gallinarum EG2] Length = 436 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSIIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ + S RE + +L+ + +S++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIVFIT-SAREGVTDADELVARLLYKSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + E + + + +S + G G DVL+ Sbjct: 123 -NPEMRADIYEFYT--LGLGDPYPISGSHGLGIGDVLD 157 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + IV+ TTR +I SE + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSENGQEFTMIDTAGMRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I+ +D+V +V+++ ++ + + +IL++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIERSDVVLMVLNAEEGIREQDKRIAGYAHEAGRGIILVVNKWD 297 Query: 142 CVKPE----RLLEQAEIANKLVFIEKT---FMVSATK 171 +K E R E AEI ++ +++ F+ +ATK Sbjct: 298 LLKKETNTMRDFE-AEIRDEFQYLDYAPIIFVSAATK 333 >gi|227543422|ref|ZP_03973471.1| GTP-binding protein EngA [Lactobacillus reuteri CF48-3A] gi|300910088|ref|ZP_07127548.1| ribosome-associated GTPase EngA [Lactobacillus reuteri SD2112] gi|227186601|gb|EEI66672.1| GTP-binding protein EngA [Lactobacillus reuteri CF48-3A] gi|300892736|gb|EFK86096.1| ribosome-associated GTPase EngA [Lactobacillus reuteri SD2112] Length = 440 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 8 IVAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEIS 67 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + + I AD++ V D ++ + D +++A+ RS++ ++L +NK Sbjct: 68 DQPLLTQIRQQAEVAIDEADVIIFVAD----VENGVTDADEQVARILYRSNKPVVLAVNK 123 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D PER +++I + + + + VS+ G G D+L+ + P Sbjct: 124 VD--NPER---RSDIYDYYSLGLGEPYAVSSVHGIGMGDLLDAVIKEFP 167 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 12/127 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 + +G N GKS+LVN +G IV++ TTR + + Q +DT GI Sbjct: 181 SFIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTQFETADGQKFTMVDTAGIRKKG 240 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILIL 137 Y + + S I +D+V +V+++ I +L K IA + +I+++ Sbjct: 241 KIYENTERYSLMRSMRAIDDSDVVLVVLNAEE----GIRELDKHIAGYAHEAGCGVIIVV 296 Query: 138 NKIDCVK 144 NK D +K Sbjct: 297 NKWDTLK 303 >gi|189439326|ref|YP_001954407.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum DJO10A] gi|312132698|ref|YP_004000037.1| cmk [Bifidobacterium longum subsp. longum BBMN68] gi|189427761|gb|ACD97909.1| Cytidylate kinase [Bifidobacterium longum DJO10A] gi|311773657|gb|ADQ03145.1| Cmk [Bifidobacterium longum subsp. longum BBMN68] Length = 709 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 333 DVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L AE + + + + +SA G G D+L+ L A Sbjct: 393 QASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALDKLKQA 435 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IV+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + + ++ ++L+ N Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDAM 571 >gi|166714251|ref|ZP_02245458.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzicola BLS256] Length = 446 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 18/172 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSH--RELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + +R + + ++ AD+ +V+D+ R + I D + + R + I NK D + Sbjct: 281 IEREGMRRARAELERADLALVVLDARDPRVAREAIGDAIDAV----PRQLWIHNKCDLLS 336 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 L+ IA VSA G G + L+ L V S D Sbjct: 337 DAAPLDVNAIA-----------VSAVTGQGLEQ-LHIRLRELAFGDGVESVD 376 >gi|311745511|ref|ZP_07719296.1| ribosome-associated GTPase EngA [Algoriphagus sp. PR1] gi|126578066|gb|EAZ82286.1| ribosome-associated GTPase EngA [Algoriphagus sp. PR1] Length = 437 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 3/160 (1%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + VA+VG N GKSTL NR V + +I + TR G +DT G Sbjct: 2 ANIVAIVGRPNVGKSTLFNRLVEERKAIEDNMSGVTRDRHYGHAQWTGKFFSVIDTGGYV 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D ++ IR ++ AD++ VVD H L + E+ ++++ NK Sbjct: 62 TGSDDVYEAEIRKQVKLAVEEADVILFVVDCHDGLTDLDTEFANELRGSEKPILVVANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D E+ AE + + + F ++A G G D+L+ Sbjct: 122 D--NQEQSFMSAEFYSLGISDFEVFPIAAVSGSGTGDLLD 159 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 ++++G N GKS+ +N +G + SIVT++ TTR + + DT GI Sbjct: 180 ISILGRPNVGKSSFLNALLGKERSIVTNEAGTTRDAIHTRYKLYGQDFIITDTAGIRKKA 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + S T++ +D++ ++VD+ R L+ +L+ K + +++++NK D Sbjct: 240 KVKEDVEFYSVMRSLRTLEESDVIIVMVDASRGLESQDINLISLGIKNNKGIVIMVNKWD 299 Query: 142 CVKPE 146 ++ + Sbjct: 300 LIEKD 304 >gi|122700783|emb|CAL87980.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLNL 168 >gi|91217172|ref|ZP_01254134.1| GTP-binding protein EngA [Psychroflexus torquis ATCC 700755] gi|91184772|gb|EAS71153.1| GTP-binding protein EngA [Psychroflexus torquis ATCC 700755] Length = 442 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + + +IV TR G + +DT G + Sbjct: 10 NSIVAVVGRPNVGKSTLFNRMIKRREAIVDSASGVTRDRHYGKSDWNGREFTLIDTGGYV 69 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + K + + I AD++ VVD + D+ K + K + ++L +NK+ Sbjct: 70 IGSDDVFEKEIDKQVELAIDEADVIIFVVDVITGITPMDEDVSKLLRKINKPVVLCVNKV 129 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D K + E N + + + + +SAT G G ++L+ Sbjct: 130 DSNKNR--TDALEFYN--LGLGEYYSISATSGSGTGELLD 165 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + +DT GI Sbjct: 186 AVVGRPNAGKSSFINALIGEDRYIVTDIPGTTRDSIDTRYTRFGFDFKLVDTAGIRRKAK 245 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I+++D+ +V+D+ R + + K +++++NK D Sbjct: 246 VKEDLEFYSVMRSVRAIENSDVCLIVMDASRGFDSQVQSIFWLAEKNRKGIVILVNKWDL 305 Query: 143 VKPE 146 VK E Sbjct: 306 VKKE 309 >gi|317483526|ref|ZP_07942510.1| GTP-binding protein HflX [Bifidobacterium sp. 12_1_47BFAA] gi|322689523|ref|YP_004209257.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] gi|322691480|ref|YP_004221050.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|316915016|gb|EFV36454.1| GTP-binding protein HflX [Bifidobacterium sp. 12_1_47BFAA] gi|320456336|dbj|BAJ66958.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320460859|dbj|BAJ71479.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] Length = 501 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L NR G+ + T + VR + ++DT G Sbjct: 282 TVAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRR 341 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE--LKVN-IHDLLKEIAKRSS-RLILILN 138 + + + + AD++ VVD SH + +V+ ++D+L +I +S IL+ N Sbjct: 342 LPTQLVEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFN 401 Query: 139 KIDCVKPERLLEQAEIANK---LVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K D QA+ A + F+VSA G G D++ + S LP+ Sbjct: 402 KAD---------QADEATRERLAALQPDAFIVSAYTGEGLDELRTAVESLLPV 445 >gi|312134695|ref|YP_004002033.1| gtp-binding proten hflx [Caldicellulosiruptor owensensis OL] gi|311774746|gb|ADQ04233.1| GTP-binding proten HflX [Caldicellulosiruptor owensensis OL] Length = 509 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+++G TNAGKSTL+NR A V +V K+ T V K + + DT G Sbjct: 352 VVSIIGYTNAGKSTLMNRISKADV-LVEDKLFATLDTTTRRVYHKGKEFLLTDTVGFI-- 408 Query: 84 KDSYHKLMIRLSWS--TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 ++ H L+ S + +K+++++ VVD + +KV+ DLLK++ + LI + Sbjct: 409 RNLPHHLVEAFSSTLEEVKYSNLILNVVDISDPYYYDHIKVS-EDLLKQLGAENIPLIRV 467 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 NKID V L ++ + L + VSA G G D +L+ + Sbjct: 468 YNKIDKVD----LSSVDVFDNLPHV----FVSARDGRGIDTLLDMIV 506 >gi|300744003|ref|ZP_07073023.1| GTP-binding protein [Rothia dentocariosa M567] gi|300380364|gb|EFJ76927.1| GTP-binding protein [Rothia dentocariosa M567] Length = 593 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 16/193 (8%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ + E K + +R VA+ G TNAGKS+L+NR A V + T V Sbjct: 327 EIAAMAPARETKRLSRKRNRVPSVAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTV 386 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIH 120 R + DT G + + R + + AD++ VVD SH + + + Sbjct: 387 RKAQTPDGIGYTLSDTVGFVRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQVR 446 Query: 121 DLLKEIAKRSSRL---ILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + + IA +R I++LNK D P ER+ ++ N ++ VSA G G Sbjct: 447 AVREVIADLDARRIPEIIVLNKADAADPFILERMRQRE--PNHVI-------VSARTGEG 497 Query: 175 CDDVLNYLCSTLP 187 ++ + T+P Sbjct: 498 IGELKQKIADTIP 510 >gi|190573719|ref|YP_001971564.1| putative GTP-binding phage-like protein [Stenotrophomonas maltophilia K279a] gi|190011641|emb|CAQ45260.1| putative GTP-binding phage-related protein [Stenotrophomonas maltophilia K279a] Length = 436 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL N GA+ T VR I +V DT G + Sbjct: 200 VALVGYTNAGKSTLFNAMTGAEAYAADQLFATLDPTVRRIAVPG-GNVVLADTVGFV--R 256 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSSRLILILN 138 D H L+ R + S + AD + VVD+ HRE ++ + ++L + +L+ N Sbjct: 257 DLPHDLVAAFRSTLSEAREADFLLHVVDAADPHREERIAQVDEVLTAVGAGDLPQLLVFN 316 Query: 139 KIDCV 143 KID + Sbjct: 317 KIDRI 321 >gi|122700887|emb|CAL88032.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQVSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILNALNL 168 >gi|68472595|ref|XP_719616.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] gi|68472852|ref|XP_719491.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] gi|46441310|gb|EAL00608.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] gi|46441440|gb|EAL00737.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] Length = 529 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 7/160 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 +AL+G NAGKS+++N +IV+ TTR I+ + ++V DT GI F Sbjct: 282 LALLGPPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFE 341 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVD--SHRELKVNIHDLLKEIAKRSSRLILILNKI 140 DS + I+ + AD V +V+D S + + + + LK + K + +++++LNK Sbjct: 342 EADSIEQEGIKRAKQRSMLADFVIVVLDPMSVEKEPLELKEHLKTLVKANKQMLIVLNKQ 401 Query: 141 DCVKPERLLEQAEIANKLVFIEKTF--MVSATKGHGCDDV 178 D R E ++L+ + K + +VS + G G D++ Sbjct: 402 DLF-ASRSEEMISNYSRLLDLPKNYFHVVSCSTGSGIDNL 440 >gi|22537760|ref|NP_688611.1| GTP-binding protein EngA [Streptococcus agalactiae 2603V/R] gi|76788647|ref|YP_330237.1| GTP-binding protein EngA [Streptococcus agalactiae A909] gi|76798461|ref|ZP_00780699.1| GTP-binding protein engA [Streptococcus agalactiae 18RS21] gi|77408494|ref|ZP_00785232.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae COH1] gi|77411928|ref|ZP_00788259.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae CJB111] gi|41017044|sp|Q8DY73|DER_STRA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123601399|sp|Q3JZR6|DER_STRA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|22534651|gb|AAN00484.1|AE014265_13 phosphoglycerate dehydrogenase-related protein [Streptococcus agalactiae 2603V/R] gi|76563704|gb|ABA46288.1| GTP-binding protein EngA, putative [Streptococcus agalactiae A909] gi|76586195|gb|EAO62715.1| GTP-binding protein engA [Streptococcus agalactiae 18RS21] gi|77162025|gb|EAO73005.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae CJB111] gi|77172936|gb|EAO76067.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae COH1] Length = 436 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVSRILYKTNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + +S+ G G D+L+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPLSSVHGIGTGDILDAIVENLPV 165 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 17/142 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEK 68 NE+ D ++ +L+G N GKS+L+N +G I + TTR +I V + Sbjct: 169 NENPDIIR-------FSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQ 221 Query: 69 ESQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 + +DT G+ + Y K + S I +D+V +V+++ RE I Sbjct: 222 GQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDVVLMVINAEEGIREYDKRIAGF 281 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K +I+++NK D ++ Sbjct: 282 AHETGK---GIIIVVNKWDTIE 300 >gi|312210491|emb|CBX90578.1| hypothetical protein [Leptosphaeria maculans] Length = 723 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-----GIVSEKESQIVFLDTPG 79 VAL+GA NAGKS+L+NR VG +IV+H+ TTR +V G K + L G Sbjct: 318 VALLGAPNAGKSSLLNRIVGRDAAIVSHEAGTTRDVVEVGLDLGGWLVKMGDMAGLRRAG 377 Query: 80 IFNAKD--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + + K IR + +D++ +V D+ E+ + + K+ +++ + Sbjct: 378 LLGEESVGAIEKEGIRRAKQRAFESDVLVVVQDATTEMDPEVMETAKQCVGMGISVLVAI 437 Query: 138 NKID 141 NK D Sbjct: 438 NKCD 441 >gi|257867660|ref|ZP_05647313.1| GTP-binding protein engA [Enterococcus casseliflavus EC30] gi|257801743|gb|EEV30646.1| GTP-binding protein engA [Enterococcus casseliflavus EC30] Length = 234 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ + S RE + +L+ + +S++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIVFIT-SAREGVTDADELVARLLYKSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + E + + + +S + G G DVL+ Sbjct: 123 -NPEMRTDIYEFYG--LGLGDPYPISGSHGLGIGDVLD 157 >gi|291613885|ref|YP_003524042.1| ribosome-associated GTPase EngA [Sideroxydans lithotrophicus ES-1] gi|291583997|gb|ADE11655.1| ribosome-associated GTPase EngA [Sideroxydans lithotrophicus ES-1] Length = 465 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTLVN +G + I + TTR + Q +DT GI Sbjct: 179 LAIVGRPNVGKSTLVNAILGEERVIAFDQPGTTRDSIYIDFERAGRQYTIIDTAGIRRRG 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ ++ L + + L+L +NK D Sbjct: 239 KIDEAIEKFSVVKTLQAIEDANVVVLVVDARDQITEQDAHLADFVLQAGRALVLAVNKWD 298 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + +R + +I KL F+ K +SA G G D +L Sbjct: 299 GLDEYKRDTVKRDIERKLHFLSFAKHHFISALNGTGVDALL 339 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 + LVG N GKSTL NR ++ ++V TR RG V E+ +V DT G+ Sbjct: 4 TLVLVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGRGRVGERPYLVV--DTGGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AK+ M + + + AD+V +VD L + ++ K ++L++NK Sbjct: 62 PVAKEGIMHEMAKQTRQAVDEADLVLFIVDGRDGLTPQDRIIATQLRKTGRPVMLLVNKA 121 Query: 141 DCVKPERL 148 + ++ ER+ Sbjct: 122 EGMRRERV 129 >gi|126731325|ref|ZP_01747132.1| GTP-binding protein HflX [Sagittula stellata E-37] gi|126708236|gb|EBA07295.1| GTP-binding protein HflX [Sagittula stellata E-37] Length = 396 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 8/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + + ++ DT G + Sbjct: 177 IVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRAVRLPTGADVILSDTVGFISD 236 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA-KRSSRLILILN 138 + R + + AD++ V D SH E D +L + + I + N Sbjct: 237 LPTELVAAFRATLEEVLAADVIVHVRDISHPETDAQAEDVRTILDGLGVDEGTPQIELWN 296 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID + + + A++ I F VSA G G D L+ + L Sbjct: 297 KIDRLSGDVKVATEARADRDAGI---FAVSAVTGEGLDGFLDAVTEAL 341 >gi|122702195|emb|CAL88288.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSLPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAILNALNL 168 >gi|122700633|emb|CAL87905.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----VPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|23015371|ref|ZP_00055149.1| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1] Length = 464 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 10/189 (5%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E TF E +D D +R +A+VG N GKSTL N+ +G + + TR + Sbjct: 179 EETF--EGEDGEPDPTRPLTMAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGLTRDAIAVE 236 Query: 65 VSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 + ++ +DT G+ D+ KL + + TI+ +++V LV+D+ L Sbjct: 237 WEHRGRRMKLVDTAGLRKKAQIYDAIEKLSVGNTIETIRMSEVVVLVMDAAAILDKQDLT 296 Query: 122 LLKEIAKRSSRLILILNKIDCV-KPE----RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + + + + L+L +NK D V P+ RL ++ E + T +SA G G + Sbjct: 297 IARMVVEEGRALVLAINKWDVVDDPQTALKRLKDRLETSLPQAKGVTTVTLSALTGKGIE 356 Query: 177 DVLNYLCST 185 +++ + T Sbjct: 357 RLMDGVLDT 365 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA++G N GKSTL NR VG +++IV TR G S + +DT G + Sbjct: 4 TVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGFEDD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL----ILILN 138 DS M + + AD+ L++D+ + + L + A RL IL+ N Sbjct: 64 TGDSIEARMRHQTDMAVSEADVALLLIDA----RAGVTPLDRHFADHLRRLPTPVILVAN 119 Query: 139 K 139 K Sbjct: 120 K 120 >gi|315058397|gb|ADT72726.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Campylobacter jejuni subsp. jejuni S3] Length = 442 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ + LS +++ ADI+ V D+ R + +A ++ ILNK D Sbjct: 277 DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 >gi|295707338|ref|YP_003600413.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319] gi|294804997|gb|ADF42063.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319] Length = 462 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATVIIGRPNVGKSSLLNSLVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ + EL L + A + +I+I+NK Sbjct: 282 IRETEDIVERIGVERSRQYLKEADLILLVLNFNEELTDEDKKLFE--AVKGMDVIVIVNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|294501987|ref|YP_003565687.1| tRNA modification GTPase TrmE [Bacillus megaterium QM B1551] gi|294351924|gb|ADE72253.1| tRNA modification GTPase TrmE [Bacillus megaterium QM B1551] Length = 462 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATVIIGRPNVGKSSLLNSLVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ + EL L + A + +I+I+NK Sbjct: 282 IRETEDIVERIGVERSRQYLKEADLILLVLNFNEELTDEDKKLFE--AVKGMDVIVIVNK 339 Query: 140 IDC 142 D Sbjct: 340 TDL 342 >gi|292806460|gb|ADE42360.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALDL 168 >gi|29840678|ref|NP_829784.1| GTP-binding protein EngA [Chlamydophila caviae GPIC] gi|33301057|sp|Q821L7|DER_CHLCV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29835028|gb|AAP05662.1| GTP-binding protein [Chlamydophila caviae GPIC] Length = 474 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A++G N GKS+L NR ++IV + TTR + G + + +DT G+ ++ Sbjct: 4 IAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDKDS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D + K + + + + ADI+ LVVD + +L K + + LIL+ NK D Sbjct: 64 EDHFQKHIYKQALAGANEADILLLVVDIRCGITEQDAELAKMLLPLNKPLILVANKADTF 123 Query: 144 KPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 K E R+ E ++ I + VSA+ D +L Sbjct: 124 KDEHRIHELYKLG-----ISEILAVSASHDKHIDKLL 155 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+++N + + I+ + TTR V + S + +F+DT G+ Sbjct: 214 IALIGRPNVGKSSIINGLLNEERCIIDNVPGTTRDNVDILYSHNDRSYLFIDTAGLRKMK 273 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+S + + I AD+ LV+D+ L +L I+K I+++NK D Sbjct: 274 SVKNSIEWISSSRTEKAIARADVCLLVIDAQHHLSSYDKRILSLISKHKKPHIILVNKWD 333 Query: 142 CVKPERL 148 ++ R+ Sbjct: 334 LIEGVRM 340 >gi|292806454|gb|ADE42357.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFDISVSHNRGISALIDAILRALDL 168 >gi|205356679|ref|ZP_03223440.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345417|gb|EDZ32059.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 442 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ + LS +++ ADI+ V D+ R + +A ++ ILNK D Sbjct: 277 DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 >gi|116333425|ref|YP_794952.1| GTP-binding protein EngA [Lactobacillus brevis ATCC 367] gi|122269888|sp|Q03SA1|DER_LACBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116098772|gb|ABJ63921.1| Predicted GTPase [Lactobacillus brevis ATCC 367] Length = 435 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + ++ +DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYSRAEWLGTEFRMIDTGGIDMG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ +V + + + K + + +IL +NK D Sbjct: 65 DEPFLTQITQQAEIAIDEADVIVFIVSAPEGITDADEKVAKILYRADKPVILAVNKAD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + E L F + + VS G G D+L+ + P Sbjct: 123 NPE-VRESIYDFYSLGFGDP-YPVSGVHGLGLGDLLDAVVKEFP 164 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR + +++ +DT GI Sbjct: 178 SLIGRPNVGKSSLVNAMLGEERVIVSNIAGTTRDAIDTKFVADDTKFTMVDTAGIRKRGK 237 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y + + + I +D+V +V+++ ++ + + +I+++NK D Sbjct: 238 VYENTERYSVMRAMRAIDDSDVVLVVLNAEEGIREQDKRVAGYAHEAGRGIIILVNKWDT 297 Query: 143 VK 144 +K Sbjct: 298 LK 299 >gi|19852066|gb|AAL99988.1|AF487976_1 ERA-like GTPase [Mus musculus] Length = 191 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 178 VLN--YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWE 235 VLN YL + PW + + ++ A REKL +L +E+PY T WE Sbjct: 71 VLNKQYLLTQAQPGPWEFHSGVLTSQTPEEICANKIREKLLEYLPEEVPYGVQQKTVIWE 130 Query: 236 EKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQ 295 E G ++I+Q + V + S +I++G+ G I I+ E +++ +I V + L VK+ Sbjct: 131 EGPSGELVIQQNLLVPKESHVRILIGQKGLLISQIAQEVGRDLMDIFHCDVLIRLSVKLL 190 Query: 296 K 296 K Sbjct: 191 K 191 >gi|86142085|ref|ZP_01060609.1| GTP-binding protein EngA [Leeuwenhoekiella blandensis MED217] gi|85831648|gb|EAQ50104.1| GTP-binding protein EngA [Leeuwenhoekiella blandensis MED217] Length = 433 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 177 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRKSK 236 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I+H D+ LVVD+ R + ++ + +++++NK D Sbjct: 237 VKEDLEFYSVMRSVRAIEHCDVCLLVVDATRGFDGQVQNIFWLAERNRKGIVILINKWDL 296 Query: 143 VKPE 146 V+ E Sbjct: 297 VEKE 300 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST NR + + +IV TR G + +DT G Sbjct: 4 VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRHYGKTDWNGKEFSVIDTGGYVRGS 63 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + + + + I AD + +VD + D+ + ++S + L++NK+D Sbjct: 64 DDIFEEQIDKQVELAIDEADAIIFMVDVEAGVTGMDEDVATLLRRQSKPVFLVVNKVDNA 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R + E N + + + + +++ G G D+L+ + LP Sbjct: 124 M--RQDDAVEFYN--LGLGEYYTIASISGSGTGDLLDAVVEVLP 163 >gi|295091914|emb|CBK78021.1| ribosome-associated GTPase EngA [Clostridium cf. saccharolyticum K10] Length = 444 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS++VN+ +G IV++ TTR V + ++ VF+DT G+ Sbjct: 182 IAIVGKPNVGKSSIVNKLLGENRVIVSNIAGTTRDAVDTEIVHNGTEYVFIDTAGLRRKN 241 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +V+D+ + + R +I+++NK D Sbjct: 242 KIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQDAKIAGIAHDRGKGIIIVVNKWD 301 Query: 142 CVK 144 ++ Sbjct: 302 AIE 304 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + + + +DT GI + Sbjct: 7 VVAVVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPD 66 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++D M + I AD++ +VD + L + + + K +IL +NK+D Sbjct: 67 SRDIILAQMREQAEIAIATADVIIFIVDVRQGLTDSDSKVADMLRKSRKPVILAVNKVDS 126 >gi|292806560|gb|ADE42410.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALDL 168 >gi|292806492|gb|ADE42376.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAILRVLNL 168 >gi|257465498|ref|ZP_05629869.1| GTP-binding protein EngA [Actinobacillus minor 202] gi|257451158|gb|EEV25201.1| GTP-binding protein EngA [Actinobacillus minor 202] Length = 510 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 +A+VG N GKSTL NR +G + +V TTR + I E++ Q +DT G+ Sbjct: 224 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIY-IPMERDGQHYTIIDTAGVRKR 282 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 283 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKW 342 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ Y C+T Sbjct: 343 DGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFESVKEAYACAT 395 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 12/218 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIGGYDFIVIDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + M S I+ AD+V +VD+ L + + + +R +++ NK D + Sbjct: 64 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADVGIAQYLRQREKTTVVVANKTDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC----DDVLNYLCSTLPLAPWVYSADQIS 199 + AE + + + ++A +G G + VL L L + V + ++++ Sbjct: 124 DADSHC--AEFYQ--LGLGEVEQIAAAQGRGVTQLIEQVLAPLAEELGGSQAVENEEELA 179 Query: 200 DLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEK 237 D H E T+++ E + ++ E EE+ Sbjct: 180 D----HEENETTQDEWDRDFDFENEEDAALLDEALEEE 213 >gi|154688207|ref|YP_001423368.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens FZB42] gi|308175809|ref|YP_003922514.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7] gi|205829057|sp|A7ZAW1|MNME_BACA2 RecName: Full=tRNA modification GTPase mnmE gi|154354058|gb|ABS76137.1| TrmE [Bacillus amyloliquefaciens FZB42] gi|307608673|emb|CBI45044.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7] gi|328555785|gb|AEB26277.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens TA208] gi|328914174|gb|AEB65770.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens LL3] Length = 459 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT GI +D Sbjct: 226 IIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC---V 143 ++ + S +K AD++ LV++ EL L + A +I+I+NK D + Sbjct: 286 VERIGVERSRQVLKEADLILLVLNHSEELSEEDVKLFE--AVEGMDVIVIMNKTDLEAKI 343 Query: 144 KPERLLEQA 152 ER+ E A Sbjct: 344 DAERVKELA 352 >gi|122702211|emb|CAL88296.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ + + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFRINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGVPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|84624044|ref|YP_451416.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898989|ref|YP_201168.2| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576711|ref|YP_001913640.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576902|ref|YP_001913831.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae PXO99A] gi|123752759|sp|Q2P2T5|DER_XANOM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|84367984|dbj|BAE69142.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521163|gb|ACD59108.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521354|gb|ACD59299.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 465 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ E Q + +DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 +D R + + AD+V VVD RE + ++ D +L + K + +L++NKID Sbjct: 65 EDGLAGATARQARAAAGEADLVLFVVDG-REGESSLDDEILAWLRKLARPTVLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E A +SA G D++L + + LP Sbjct: 124 TDEETV--RSEFAR--YGFSDVVALSAAHRQGIDELLEEVGARLP 164 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDGRQYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIERCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + QAE ++ KL F+ + +SA G G ++ + A +S + Sbjct: 301 G-QSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGMRELFQAIHRAHASATHEFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|323141020|ref|ZP_08075926.1| GTP-binding protein HflX [Phascolarctobacterium sp. YIT 12067] gi|322414468|gb|EFY05281.1| GTP-binding protein HflX [Phascolarctobacterium sp. YIT 12067] Length = 610 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL+N + + T R + + Q + DT G Sbjct: 387 TVSLVGYTNAGKSTLLNTLTNSDIYAQDQLFATLDPTTRQLDLPNKQQAILTDTVGFIQR 446 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + + + +D++ V+D SH +E ++ +L E+ + +I + NK Sbjct: 447 LPHQLVAAFQSTLEEVVQSDVLLHVIDVSHELYKEQAAAVYQVLDELGAKDKTIITVYNK 506 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ID + P+ + +A +L E + +SA + D +L + L L Sbjct: 507 IDKLPPD-----SGLAERLSKEENSICISAKARYNLDGLLALIAENLKL 550 >gi|320159766|ref|YP_004172990.1| GTP-binding protein EngA [Anaerolinea thermophila UNI-1] gi|319993619|dbj|BAJ62390.1| GTP-binding protein EngA [Anaerolinea thermophila UNI-1] Length = 455 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG NAGKS+L+NR VG + +IV+ TTR V + I +DT GI Sbjct: 197 IAIVGKPNAGKSSLLNRLVGEERAIVSPIPGTTRDAVDTRIEYNGVPITLIDTAGIRRRG 256 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + S I+ +D+ L++D+ + + I + ++++NK D Sbjct: 257 KIEPGVEKYSVLRSLRAIERSDVALLMIDATTGITAQDTHIAGFILEAWKSAVVLVNKWD 316 Query: 142 CVKPER--LLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V+ + + E A + ++L F++ +SA G D VL Sbjct: 317 AVEKDSHTMAEYTARLRHELNFMDYVPILFISAKTGQRVDQVL 359 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 26/184 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKSTL NR G ++IV TTR + + +DT GI + Sbjct: 6 VALVGRPNVGKSTLFNRLAGEPLAIVDDIPGTTRDRLFATAEWSGVEFDIVDTGGIDPSA 65 Query: 85 DSYHKLMIRLSWS------------TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 + + + + I+ AD + +VD+ L + + +I +R + Sbjct: 66 ARAGREPLSIGSAEFIKEIRSQAELAIQDADAILFLVDAISGLTPADRE-VAQILRRKQQ 124 Query: 133 LI---------LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 ++ L++NK D L + + + + +SA G G D+L+ L Sbjct: 125 MVDGKPYPPVFLVVNKADSAN----LRAVASEFYELGMGEPYPISALHGTGTGDLLDDLI 180 Query: 184 STLP 187 ++LP Sbjct: 181 ASLP 184 >gi|310778034|ref|YP_003966367.1| ribosome-associated GTPase EngA [Ilyobacter polytropus DSM 2926] gi|309747357|gb|ADO82019.1| ribosome-associated GTPase EngA [Ilyobacter polytropus DSM 2926] Length = 439 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A++G NAGKS+LVNR G + +IV+ TTR + ++ + +DT GI Sbjct: 180 AIIGKPNAGKSSLVNRLSGKERAIVSDIAGTTRDAIDTTFEYNYNKYILIDTAGIRRKSK 239 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++S + + TIK +D+ L++D+ + + +I+++NK D Sbjct: 240 VEESLEYYSVLRAIKTIKRSDVCMLMLDAQEGITEQDKKIAGIAYDEKKPIIVVMNKWDA 299 Query: 143 VKPE 146 +K E Sbjct: 300 LKKE 303 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL N+ VG +++IV + TR + ++ V +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNKLVGDRIAIVDDQPGVTRDRLYRETDWLGTEFVIVDTGGLEPRN 64 Query: 85 DSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILNK 139 + I+ I AD++ VVD K + L +E+A K++ +IL +NK Sbjct: 65 KDFMMTKIKQQAEVAINEADVILFVVDG----KAGVTALDEEVAYILRKKNKPVILCVNK 120 Query: 140 ID 141 +D Sbjct: 121 VD 122 >gi|296164609|ref|ZP_06847176.1| ribosome-associated GTPase EngA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900028|gb|EFG79467.1| ribosome-associated GTPase EngA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 466 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V + V DT G Sbjct: 31 VVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPD 90 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L+ + ++ AD V LVVD+ + + + + L NK+D Sbjct: 91 AKGLQQLVAEQASVAMRTADAVILVVDASVGATSADEAAARILLRSGKPVFLAANKVDSE 150 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E + A + + + + + VSA G G D+L+ + + LP Sbjct: 151 KGE--ADAAALWS--LGLGEPHAVSAMHGRGVADLLDEVLAALP 190 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 6/140 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ F+DT G+ Sbjct: 205 VALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKV 264 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + S I A++V +++D+ + L +L + + L+L NK D Sbjct: 265 GQASGHEFYASVRTHSAIDAAEVVVVLIDASQPLTEQDQRVLSMVIEAGRALVLAFNKWD 324 Query: 142 CVKPER--LLEQAEIANKLV 159 V +R LLE+ EI +LV Sbjct: 325 LVDEDRRELLER-EIDRELV 343 >gi|292806682|gb|ADE42471.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALDL 168 >gi|268325198|emb|CBH38786.1| conserved hypothetical protein, GTPase family [uncultured archaeon] Length = 366 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 10/127 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 + K + S + LVG + GKSTL+NR G + ++ TT ++ G + K Sbjct: 51 GKGKGYFVKKSGHATIVLVGFPSVGKSTLLNRLTGTSAEVAAYEF-TTLEVIPGTLIYKG 109 Query: 70 SQIVFLDTPGIFN---AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 +Q+ FLD PG+ A + K +I S +++AD++ ++VD ++ + +I LLKE+ Sbjct: 110 AQLQFLDVPGLIQGAAAGRGHGKEVI----SVMRNADLILILVDVFQQQQYDI--LLKEL 163 Query: 127 AKRSSRL 133 R+ Sbjct: 164 YDAGIRI 170 >gi|256825566|ref|YP_003149526.1| GTP-binding proten HflX [Kytococcus sedentarius DSM 20547] gi|256688959|gb|ACV06761.1| GTP-binding proten HflX [Kytococcus sedentarius DSM 20547] Length = 517 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 27/190 (14%) Query: 16 VQDNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 V+D RS V + G TNAGKS+L+NR A V + T VR + Sbjct: 279 VRDTKRSSRKDHQVPSVVIAGYTNAGKSSLLNRLTRAGVLVENQLFATLDPTVRRTETAD 338 Query: 69 ESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNI------ 119 DT G + H+L+ R + + AD+V VVD SH + + I Sbjct: 339 GRVFTLADTVGFV--RSLPHQLVEAFRSTLEEVADADLVLHVVDGSHPDPENQISAVREV 396 Query: 120 -HDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDD 177 ++L E S I+++NK D P E+ +L+ EK + VSA G G + Sbjct: 397 LSEVLDEKGADSMNEIIVINKADAADP-------EVVARLLRTEKRSIAVSARTGQGITE 449 Query: 178 VLNYLCSTLP 187 + + S LP Sbjct: 450 LRELVESELP 459 >gi|281419980|ref|ZP_06250979.1| thiophene and furan oxidation protein ThdF [Prevotella copri DSM 18205] gi|281405780|gb|EFB36460.1| thiophene and furan oxidation protein ThdF [Prevotella copri DSM 18205] Length = 341 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TN GKSTL+NR + + +IV+ TTR ++ F+DT GI Sbjct: 99 AVAIVGKTNVGKSTLLNRLLHEEKAIVSDIHGTTRDVIEDTTLIDGITFRFIDTAGIRKT 158 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + I ++ ++ A IV ++D I ++ ++ + +L+++ NK+D + Sbjct: 159 DDVVENIGIERTFQKMEEAKIVIWLLDEQPSAS-EIEEM--KLKNQGKKLLVVFNKMDKL 215 Query: 144 KPERL 148 + ++L Sbjct: 216 ENDKL 220 >gi|219682497|ref|YP_002468881.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254783142|sp|B8D8C1|DER_BUCAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219622230|gb|ACL30386.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086326|gb|ADP66408.1| GTP-binding protein EngA [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086900|gb|ADP66981.1| GTP-binding protein EngA [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 453 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 14/171 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 + L+G TN GKSTL N + ++V + TR G + +I+ +DT G+ Sbjct: 5 IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + IK A ++ +V++ L +++ K I K + IL++NKID + Sbjct: 65 LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124 Query: 144 KPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +A N+ + EK +SA+ G + ++N L PW+ Sbjct: 125 ------NEASKINEFYSLGFEKIQKISASHNQGINTLINRY-----LIPWI 164 Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 16/161 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G N GKSTL+N + + I ++ TT + + +DT G K Sbjct: 189 VAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYTLIDTAGASKKK 248 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 + + + I + TI+ ++++ L++D+ H++L L I ++++ Sbjct: 249 KKINDFQRFSIIKTLQTIEKSNVILLIIDASLQTCHQDL-----SLADFIIHSGKGIVVV 303 Query: 137 LNKID---CVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +NK D V+ +++ E + K ++ K +SA G Sbjct: 304 VNKCDLFNSVELKKIKELIKSKLKFLYFSKIHFISALYKKG 344 >gi|122702171|emb|CAL88276.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|57651106|ref|YP_187524.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus COL] gi|87160757|ref|YP_495280.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151222824|ref|YP_001333646.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. Newman] gi|161510921|ref|YP_001576580.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258451369|ref|ZP_05699400.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948] gi|262049467|ref|ZP_06022339.1| tRNA modification GTPase [Staphylococcus aureus D30] gi|262051898|ref|ZP_06024113.1| tRNA modification GTPase [Staphylococcus aureus 930918-3] gi|282920717|ref|ZP_06328436.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765] gi|284023035|ref|ZP_06377433.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 132] gi|294849826|ref|ZP_06790566.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754] gi|73919888|sp|Q5HCI3|MNME_STAAC RecName: Full=tRNA modification GTPase mnmE gi|123484183|sp|Q2FDE8|MNME_STAA3 RecName: Full=tRNA modification GTPase mnmE gi|172049081|sp|A6QKK2|MNME_STAAE RecName: Full=tRNA modification GTPase mnmE gi|189036213|sp|A8YYS1|MNME_STAAT RecName: Full=tRNA modification GTPase mnmE gi|57285292|gb|AAW37386.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus COL] gi|87126731|gb|ABD21245.1| tRNA modification GTPase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150375624|dbj|BAF68884.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. Newman] gi|160369730|gb|ABX30701.1| GTP-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860899|gb|EEV83716.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948] gi|259160225|gb|EEW45254.1| tRNA modification GTPase [Staphylococcus aureus 930918-3] gi|259162464|gb|EEW47034.1| tRNA modification GTPase [Staphylococcus aureus D30] gi|282594125|gb|EFB99113.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765] gi|294823374|gb|EFG39803.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754] gi|315197916|gb|EFU28249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus CGS01] gi|320141415|gb|EFW33258.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MRSA131] gi|320144398|gb|EFW36163.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MRSA177] Length = 459 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD++ V++++ L + L + + ++ +I+I+NK Sbjct: 279 IRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNK 336 Query: 140 IDC 142 +D Sbjct: 337 MDL 339 >gi|49487489|ref|YP_044710.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MSSA476] gi|73919890|sp|Q6G5W4|MNME_STAAS RecName: Full=tRNA modification GTPase mnmE gi|49245932|emb|CAG44413.1| probable tRNA modification GTPase [Staphylococcus aureus subsp. aureus MSSA476] Length = 459 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD++ V++++ L + L + + ++ +I+I+NK Sbjct: 279 IRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNK 336 Query: 140 IDC 142 +D Sbjct: 337 MDL 339 >gi|77405817|ref|ZP_00782901.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae H36B] gi|77414237|ref|ZP_00790399.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae 515] gi|77159726|gb|EAO70875.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae 515] gi|77175604|gb|EAO78389.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae H36B] gi|319745628|gb|EFV97929.1| ribosome-associated GTPase EngA [Streptococcus agalactiae ATCC 13813] Length = 436 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVSRILYKTNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + +S+ G G D+L+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPLSSVHGIGTGDILDAIVENLPV 165 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 17/142 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEK 68 NE+ D ++ +L+G N GKS+L+N +G I + TTR +I V + Sbjct: 169 NENPDIIR-------FSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQ 221 Query: 69 ESQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 + +DT G+ + Y K + S I +D+V +V+++ RE I Sbjct: 222 GQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDVVLMVINAEEGIREYDKRIAGF 281 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K +I+++NK D ++ Sbjct: 282 AHEAGK---GIIIVVNKWDTIE 300 >gi|15928297|ref|NP_375830.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus N315] gi|21284359|ref|NP_647447.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MW2] gi|49484907|ref|YP_042131.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MRSA252] gi|88196667|ref|YP_501498.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148269143|ref|YP_001248086.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JH9] gi|150395225|ref|YP_001317900.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JH1] gi|221141513|ref|ZP_03566006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316838|ref|ZP_04840051.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730397|ref|ZP_04864562.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733841|ref|ZP_04868006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH130] gi|257424194|ref|ZP_05600623.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 55/2053] gi|257426871|ref|ZP_05603273.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus 65-1322] gi|257429507|ref|ZP_05605894.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus 68-397] gi|257432154|ref|ZP_05608517.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus E1410] gi|257435115|ref|ZP_05611166.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M876] gi|257793536|ref|ZP_05642515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781] gi|258411158|ref|ZP_05681437.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763] gi|258420938|ref|ZP_05683872.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719] gi|258438577|ref|ZP_05689800.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299] gi|258443967|ref|ZP_05692305.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115] gi|258446217|ref|ZP_05694377.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300] gi|258449124|ref|ZP_05697230.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224] gi|258454398|ref|ZP_05702366.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937] gi|269204349|ref|YP_003283618.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ED98] gi|282894277|ref|ZP_06302507.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117] gi|282907045|ref|ZP_06314893.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus Btn1260] gi|282910024|ref|ZP_06317832.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912272|ref|ZP_06320068.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WBG10049] gi|282912912|ref|ZP_06320704.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M899] gi|282918066|ref|ZP_06325816.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus D139] gi|282921288|ref|ZP_06329006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C427] gi|282922540|ref|ZP_06330230.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C101] gi|282927748|ref|ZP_06335362.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102] gi|283767788|ref|ZP_06340703.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus H19] gi|283959482|ref|ZP_06376923.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus A017934/97] gi|293497965|ref|ZP_06665819.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 58-424] gi|293511555|ref|ZP_06670249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M809] gi|293550164|ref|ZP_06672836.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M1015] gi|295406862|ref|ZP_06816666.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819] gi|295429295|ref|ZP_06821917.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275689|ref|ZP_06858196.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MR1] gi|297209454|ref|ZP_06925852.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245897|ref|ZP_06929759.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796] gi|297589203|ref|ZP_06947844.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MN8] gi|300911478|ref|ZP_07128927.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH70] gi|304379946|ref|ZP_07362675.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039754|sp|P66973|MNME_STAAW RecName: Full=tRNA modification GTPase mnmE gi|54042258|sp|P66972|MNME_STAAN RecName: Full=tRNA modification GTPase mnmE gi|73919889|sp|Q6GD92|MNME_STAAR RecName: Full=tRNA modification GTPase mnmE gi|122538496|sp|Q2FUQ2|MNME_STAA8 RecName: Full=tRNA modification GTPase mnmE gi|189036211|sp|A6U595|MNME_STAA2 RecName: Full=tRNA modification GTPase mnmE gi|189036212|sp|A5IWD7|MNME_STAA9 RecName: Full=tRNA modification GTPase mnmE gi|13702669|dbj|BAB43809.1| possible thiophene and furan oxidation protein [Staphylococcus aureus subsp. aureus N315] gi|21205803|dbj|BAB96495.1| possible thiophene and furan oxidation protein [Staphylococcus aureus subsp. aureus MW2] gi|49243036|emb|CAG41770.1| probable tRNA modification GTPase [Staphylococcus aureus subsp. aureus MRSA252] gi|87204225|gb|ABD32035.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147742212|gb|ABQ50510.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus JH9] gi|149947677|gb|ABR53613.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JH1] gi|253725877|gb|EES94606.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728144|gb|EES96873.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH130] gi|257273212|gb|EEV05314.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 55/2053] gi|257276502|gb|EEV07953.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus 65-1322] gi|257279988|gb|EEV10575.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus 68-397] gi|257283033|gb|EEV13165.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus E1410] gi|257285711|gb|EEV15827.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M876] gi|257787508|gb|EEV25848.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781] gi|257840043|gb|EEV64508.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763] gi|257843128|gb|EEV67543.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719] gi|257848136|gb|EEV72128.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299] gi|257850851|gb|EEV74795.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115] gi|257855043|gb|EEV77986.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300] gi|257857557|gb|EEV80452.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224] gi|257863492|gb|EEV86252.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937] gi|262076639|gb|ACY12612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ED98] gi|269942298|emb|CBI50713.1| probable tRNA modification GTPase [Staphylococcus aureus subsp. aureus TW20] gi|282314761|gb|EFB45147.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C101] gi|282315703|gb|EFB46087.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C427] gi|282318351|gb|EFB48711.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus D139] gi|282323012|gb|EFB53331.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M899] gi|282323968|gb|EFB54284.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WBG10049] gi|282326090|gb|EFB56395.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329944|gb|EFB59465.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus Btn1260] gi|282590508|gb|EFB95586.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102] gi|282763322|gb|EFC03452.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117] gi|283461667|gb|EFC08751.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus H19] gi|283471926|emb|CAQ51137.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ST398] gi|283789074|gb|EFC27901.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus A017934/97] gi|285818375|gb|ADC38862.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus aureus 04-02981] gi|290919211|gb|EFD96287.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M1015] gi|291096896|gb|EFE27154.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 58-424] gi|291465513|gb|EFF08045.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M809] gi|294968327|gb|EFG44352.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819] gi|295127054|gb|EFG56698.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885915|gb|EFH24850.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177262|gb|EFH36515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796] gi|297577714|gb|EFH96427.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MN8] gi|300887657|gb|EFK82853.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH70] gi|302334326|gb|ADL24519.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JKD6159] gi|302752589|gb|ADL66766.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341526|gb|EFM07436.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436861|gb|ADQ75932.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH60] gi|312831050|emb|CBX35892.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129541|gb|EFT85533.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus CGS03] gi|315195224|gb|EFU25612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus CGS00] gi|323439701|gb|EGA97419.1| tRNA modification GTPase TrmE [Staphylococcus aureus O11] gi|323443274|gb|EGB00891.1| tRNA modification GTPase TrmE [Staphylococcus aureus O46] gi|329315432|gb|AEB89845.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus T0131] gi|329725659|gb|EGG62138.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 21172] gi|329731690|gb|EGG68050.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 21189] gi|329732386|gb|EGG68736.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 21193] Length = 459 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD++ V++++ L + L + + ++ +I+I+NK Sbjct: 279 IRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNK 336 Query: 140 IDC 142 +D Sbjct: 337 MDL 339 >gi|311087490|gb|ADP67570.1| GTP-binding protein EngA [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 453 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 14/171 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 + L+G TN GKSTL N + ++V + TR G + +I+ +DT G+ Sbjct: 5 IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + IK A ++ +V++ L +++ K I K + IL++NKID + Sbjct: 65 LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124 Query: 144 KPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +A N+ + EK +SA+ G + ++N L PW+ Sbjct: 125 ------NEASKINEFYSLGFEKIQKISASHNQGINTLINRY-----LIPWI 164 Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 16/161 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G N GKSTL+N + + I ++ TT + + +DT G K Sbjct: 189 VAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYTLIDTAGASKKK 248 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 + + + I + TI+ ++++ L++D+ H++L L I ++++ Sbjct: 249 KKINDFQRFSIIKTLQTIEKSNVILLIIDASLQTCHQDL-----SLADFIIHSGKGIVVV 303 Query: 137 LNKID---CVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +NK D V+ +++ E + K ++ K +SA G Sbjct: 304 VNKCDLFNSVELKKIKELIKSKLKFLYFSKIHFISALYKKG 344 >gi|298695968|gb|ADI99190.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ED133] Length = 459 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD++ V++++ L + L + + ++ +I+I+NK Sbjct: 279 IRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNK 336 Query: 140 IDC 142 +D Sbjct: 337 MDL 339 >gi|72080548|ref|YP_287606.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae 7448] gi|123645152|sp|Q4A8F6|MNME_MYCH7 RecName: Full=tRNA modification GTPase mnmE gi|71913672|gb|AAZ53583.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma hyopneumoniae 7448] Length = 442 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVGA N+GKS+L+N + +I++ TTR +V G DT GI + Sbjct: 221 LVGAPNSGKSSLLNILINENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEK 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ I S+ +IK AD++ ++D+ + + N+ LK A+ + I NK D ++ + Sbjct: 281 IEQIGIEKSYESIKKADLILHIIDASEKNRQNLD--LKAKARPDQVYLKIYNKSDLLENQ 338 >gi|210615490|ref|ZP_03290617.1| hypothetical protein CLONEX_02833 [Clostridium nexile DSM 1787] gi|210150339|gb|EEA81348.1| hypothetical protein CLONEX_02833 [Clostridium nexile DSM 1787] Length = 396 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 10/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+++N G ++IV+ K TT +++ + +V +DTPG+ + Sbjct: 14 IGIFGKRNAGKSSVINAITGQDLAIVSDIKGTTTDPVLKSMELLPLGPVVLIDTPGL-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L I+ ++ + DI LVVD + +L I +++ +++ NK+D + Sbjct: 73 EGKLGTLRIKKAYQMLNKTDIAVLVVDGSIGMTEEDDRILTRIKEKNIPYVIVFNKMDLI 132 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + E + VSA G+ + + S LP Sbjct: 133 TDASVNTRQE--------SHSLQVSAKNGYHIQALKELIASQLP 168 >gi|152981185|ref|YP_001353813.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille] gi|166198722|sp|A6SZW6|DER_JANMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151281262|gb|ABR89672.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille] Length = 447 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 6/167 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N RS +A+VG N GKSTLVN +G + I TTR + +DT Sbjct: 177 NDRSIKLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRDSIEIPFERDGKHYTLIDTA 236 Query: 79 GIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 GI ++ K + + +I A++V L++D+ +++ + I + L++ Sbjct: 237 GIRRRGKVFEAIEKFSVVKTLQSISEANVVLLLLDAQQDISEQDAHIAGFILESGRALVV 296 Query: 136 ILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 +NK D + +R E + ++ KL F+ KT VSA K G ++ Sbjct: 297 GVNKWDGLTSDRRDEIKMDLERKLSFLSFAKTHFVSALKSSGIGPMM 343 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 7/158 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +AL+G N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALIGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AK+ M + + + AD+V +VD + L + + + K ++L++NK + Sbjct: 64 AKEGIMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNKAEG 123 Query: 143 VKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVL 179 +K + E+ + +++SA G G +D++ Sbjct: 124 MKYTTVTADFYELG-----MGDPYVISAAHGDGVNDLV 156 >gi|148926123|ref|ZP_01809809.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845602|gb|EDK22694.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 442 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ + LS +++ ADI+ V D+ R + +A ++ ILNK D Sbjct: 277 DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 >gi|122702149|emb|CAL88265.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAVLRALNL 168 >gi|120404249|ref|YP_954078.1| GTP-binding protein EngA [Mycobacterium vanbaalenii PYR-1] gi|166225829|sp|A1TA72|DER_MYCVP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119957067|gb|ABM14072.1| small GTP-binding protein [Mycobacterium vanbaalenii PYR-1] Length = 470 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V S + + DT G Sbjct: 33 VVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDASWSGQRFMVQDTGGWEPD 92 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L+ + ++ AD + VVDS K + + + L NK+D Sbjct: 93 AKGLQQLVAEQASVAMRTADAIIFVVDSVVGATAADEAAAKLLQRSGKPVFLAANKVDN- 151 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ER A L E +SA G G D+L+ + LP Sbjct: 152 --ERGEADAAALWSLGLGEP-HPISAMHGRGVADLLDAVVDALP 192 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+NR G + S+V TT V ++ F+DT G+ Sbjct: 208 VALVGKPNVGKSSLLNRLSGDERSVVHDVAGTTVDPVDSLIEMDGKLWRFVDTAGLRRKV 267 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + I A++ ++VD+ + L +L + + L+L NK D Sbjct: 268 GQASGHEFYASVRTHGAIDAAEVAIVLVDASQPLTEQDQRVLSMVVEAGRALVLAFNKWD 327 Query: 142 CVKPER 147 V +R Sbjct: 328 LVDEDR 333 >gi|124805918|ref|XP_001350575.1| GTP binding protein, putative [Plasmodium falciparum 3D7] gi|23496699|gb|AAN36255.1| GTP binding protein, putative [Plasmodium falciparum 3D7] Length = 874 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 12/143 (8%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 EH D + N+ + ++ +G N GKS+++N+ + IV+ TT + +V K+S Sbjct: 563 EHDDINEQNTIN--ISFIGKPNTGKSSILNKILNCNRFIVSPLAGTTVDSIDVLVKLKQS 620 Query: 71 QIVF--LDTPGI--------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 ++ +DT GI FN K Y L+ + IK +D+ LV+DS + Sbjct: 621 DRIYRLIDTAGIQKRKKNVPFNNKTKYEYLLYNRTEKAIKRSDVCILVIDSFNGISTQDI 680 Query: 121 DLLKEIAKRSSRLILILNKIDCV 143 ++ ++I + + I+ NK D + Sbjct: 681 NIARKIVQENKSCIICCNKWDLI 703 >gi|297621840|ref|YP_003709977.1| GTP-binding protein EngA [Waddlia chondrophila WSU 86-1044] gi|297377141|gb|ADI38971.1| GTP-binding protein EngA [Waddlia chondrophila WSU 86-1044] Length = 454 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 5/128 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKSTL N + + +V+ TTR V VS + F+DT GI K Sbjct: 181 VAIIGRPNVGKSTLTNYLLDEERCLVSPIPGTTRDSVDVRVSHDDEIYTFIDTAGI-RRK 239 Query: 85 DSYHKLMIRL----SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + H+ + + + I+ DI L+VD+ + + + K I K I++LNK Sbjct: 240 GAEHEAVDKFAAIRTQRAIERCDICLLMVDAQQGITAQEKRIAKMIEKEGKCCIVLLNKW 299 Query: 141 DCVKPERL 148 D VK R+ Sbjct: 300 DLVKGFRM 307 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 +A+VG N GKS+L NR +++IV TR + + +DT GI + Sbjct: 7 LAIVGRPNVGKSSLFNRICKKRMAIVDEAEGITRDRLYAEADCFGKEFEVIDTGGINPRS 66 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + +++ ++R + I+ AD + L VD+H + H++ + + + + + +NKID Sbjct: 67 QVPFNEQIMRQAEIAIEEADGLILAVDAHTGITDLDHEVARVLLHTNKPVTVAVNKID 124 >gi|294627441|ref|ZP_06706025.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598262|gb|EFF42415.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 446 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 14/170 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ + D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + +R + ++ AD+ +V+D+ R+ + D + + R + I NK D Sbjct: 281 IEREGMRRARVELERADLALVVLDA-RDPQA-ARDAIGDAIDAVPRQLWIHNKCDL---- 334 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + N VSA G G + L+ L L V S D Sbjct: 335 -------LGNAASLDANAIAVSAVTGQGLEQ-LHIRLRALALGDGVDSVD 376 >gi|222112656|ref|YP_002554920.1| tRNA modification gtpase trme [Acidovorax ebreus TPSY] gi|221732100|gb|ACM34920.1| tRNA modification GTPase TrmE [Acidovorax ebreus TPSY] Length = 467 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N GA+++IVT TTR V+ + + + +DT G+ + Sbjct: 227 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESD 286 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 D ++ I +W I AD V + D R Sbjct: 287 DEVERIGIARAWDEIAGADAVLFLHDLTR 315 >gi|122700777|emb|CAL87977.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I++ TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIVLNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALNL 168 >gi|82752290|ref|YP_418031.1| tRNA modification GTPase TrmE [Staphylococcus aureus RF122] gi|123549492|sp|Q2YZB8|MNME_STAAB RecName: Full=tRNA modification GTPase mnmE gi|82657821|emb|CAI82276.1| tRNA modification GTPase [Staphylococcus aureus RF122] Length = 459 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD++ V++++ L + L + + ++ +I+I+NK Sbjct: 279 IRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNK 336 Query: 140 IDC 142 +D Sbjct: 337 MDL 339 >gi|15617192|ref|NP_240405.1| GTP-binding protein EngA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681942|ref|YP_002468328.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471654|ref|ZP_05635653.1| GTP-binding protein EngA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11132317|sp|P57662|DER_BUCAI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783141|sp|B8D8G4|DER_BUCA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|25328230|pir||C85000 hypothetical GTP-binding protein [imported] - Buchnera sp. (strain APS) gi|10039257|dbj|BAB13291.1| hypothetical GTP-binding protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624785|gb|ACL30940.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 453 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 14/171 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 + L+G TN GKSTL N + ++V + TR G + +I+ +DT G+ Sbjct: 5 IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + IK A ++ +V++ L +++ K I K + IL++NKID + Sbjct: 65 LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124 Query: 144 KPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +A N+ + EK +SA+ G + ++N L PW+ Sbjct: 125 ------NEASKINEFYSLGFEKIQKISASHNQGINTLINRY-----LIPWI 164 Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 16/161 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G N GKSTL+N + + I ++ TT + + +DT G K Sbjct: 189 VAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYTLIDTAGASKKK 248 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 + + + I + TI+ ++++ L++D+ H++L L I ++++ Sbjct: 249 KKINDFQRFSIIKTLQTIEKSNVILLIIDASLQTCHQDL-----SLADFIIHSGKGIVVV 303 Query: 137 LNKID---CVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +NK D V+ +++ E + K ++ K +SA G Sbjct: 304 VNKCDLFNSVELKKIKELIKSKLKFLYFSKIHFISALYKKG 344 >gi|292806620|gb|ADE42440.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLRAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALNL 168 >gi|57237784|ref|YP_179032.1| tRNA modification GTPase TrmE [Campylobacter jejuni RM1221] gi|81353660|sp|Q5HUK3|MNME_CAMJR RecName: Full=tRNA modification GTPase mnmE gi|57166588|gb|AAW35367.1| tRNA modification GTPase TrmE [Campylobacter jejuni RM1221] Length = 442 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ + LS +++ ADI+ V D+ R + +A ++ ILNK D Sbjct: 277 DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 >gi|52673270|emb|CAH56508.1| putative tRNA modification GTPase trmE [Bacillus amyloliquefaciens FZB42] Length = 462 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT GI +D Sbjct: 229 IIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 288 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC---V 143 ++ + S +K AD++ LV++ EL L + A +I+I+NK D + Sbjct: 289 VERIGVERSRQVLKEADLILLVLNHSEELSEEDVKLFE--AVEGMDVIVIMNKTDLEAKI 346 Query: 144 KPERLLEQA 152 ER+ E A Sbjct: 347 DAERVKELA 355 >gi|85716391|ref|ZP_01047363.1| GTP-binding protein EngA [Nitrobacter sp. Nb-311A] gi|85696748|gb|EAQ34634.1| GTP-binding protein EngA [Nitrobacter sp. Nb-311A] Length = 458 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL NR VG ++++V + TR G + +DT G+ Sbjct: 4 TIAIIGRPNVGKSTLFNRLVGQRLALVDDEPGVTRDRREGQARLGDLDFTVIDTAGLDEG 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + S M + + I AD + V D+ L + A+R+ + ++L+ NK + Sbjct: 64 PRGSLTARMQEQTETAIAAADALMFVFDARAGLTPTDRS-FADFARRADKPVVLVANKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 R + + + + + VSA G G D+ + L + +P Sbjct: 123 G----RHGDAGALESYALGLGDPIGVSAEHGEGMGDLYDALRAVMP 164 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKST++N + + + + TTR + + DT G+ Sbjct: 189 VAIVGRPNAGKSTVINYLLNEDRLLTSPEAGTTRDSISVELDWHGRDFRIFDTAGLRRRS 248 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 ++ KL + + ++ A++V L++D+ E + I DL I + L++ +N Sbjct: 249 RIEEKLEKLSVADTLRAVRFAEVVVLMMDAQNRFEEQDLRIADL---IEREGRALVIAVN 305 Query: 139 KIDCVK 144 K D ++ Sbjct: 306 KWDLMQ 311 >gi|294791776|ref|ZP_06756924.1| ribosome-associated GTPase EngA [Veillonella sp. 6_1_27] gi|294793637|ref|ZP_06758774.1| ribosome-associated GTPase EngA [Veillonella sp. 3_1_44] gi|294455207|gb|EFG23579.1| ribosome-associated GTPase EngA [Veillonella sp. 3_1_44] gi|294457006|gb|EFG25368.1| ribosome-associated GTPase EngA [Veillonella sp. 6_1_27] Length = 444 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 5/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N V ++SIV TR + + +DT GI Sbjct: 5 LVAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFI 64 Query: 84 KDSYHKL--MIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 D+ H + M+RL I+ AD++ VVD + + V + + I + S + ++L++NK Sbjct: 65 TDNSHVIPKMMRLQAELAIEEADVILFVVDGKQGI-VPADEEVANILRASGKPVVLVVNK 123 Query: 140 IDCVKPE 146 ID V E Sbjct: 124 IDSVNQE 130 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+ + VA++G N GKS+L N +G IV+ TTR + + + + V +DT Sbjct: 174 DDEDTIHVAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHENQKFVLIDT 233 Query: 78 PGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ +++ + I S ++ ADIV LV+D+ + + + ++ Sbjct: 234 AGMRRKSKIEEAVERYSIVRSLRSVDRADIVVLVLDAQDGVTEQDKKIAGYAYEAGKGVV 293 Query: 135 LILNKIDCVK 144 +++NK D V+ Sbjct: 294 IVVNKWDLVE 303 >gi|292806564|gb|ADE42412.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALDL 168 >gi|114569999|ref|YP_756679.1| small GTP-binding protein [Maricaulis maris MCS10] gi|114340461|gb|ABI65741.1| GTP-binding protein HflX [Maricaulis maris MCS10] Length = 450 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 10/173 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N+ GA V T VR + ++I+ DT G Sbjct: 202 TVALVGYTNAGKSTLFNKLTGAGVFAQDMPFATLDPTVRAVDLPGGTRILLSDTVGFITD 261 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKV----NIHDLLKEIAKRSSRLILI 136 + R + ++ AD++ ++D+ RE ++ ++ D ++ ++ Sbjct: 262 LPTELIAAFRATLEEVREADLLVHIIDASDPDREGRIQDVESVLDAIEAGPAHDQAMLEA 321 Query: 137 LNKIDCVKPERLLEQA---EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK D + E + A ++AN VSA G G D +++ + TL Sbjct: 322 WNKSDRLDDESTEDLAITIQMANLKAGKPVKLAVSAVTGQGVDSLIDAIERTL 374 >gi|18075571|emb|CAD11181.1| GTP-binding protein [Helicobacter pylori] gi|122702803|emb|CAL88591.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 19/171 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ AK Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--AK 67 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILN 138 D+ I+ L+ + +D++ VVD S +LK L +E+ K + L++N Sbjct: 68 DALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVIN 122 Query: 139 KIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID K ER + + K+F +S + G +++ + + L L Sbjct: 123 KIDNDKEKERACAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|53802851|ref|YP_115425.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath] gi|81823572|sp|Q602M5|MNME_METCA RecName: Full=tRNA modification GTPase mnmE gi|53756612|gb|AAU90903.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath] Length = 448 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 19/180 (10%) Query: 5 EITFFNEHKDFVQDNSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT 57 EIT + D + + G + + G N GKS+L+N G ++IVT TT Sbjct: 193 EITGLLDELDTIDTKAHQGALLREGLTTVIAGRPNVGKSSLLNALAGRDLAIVTEIPGTT 252 Query: 58 RSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV 117 R ++R + + +DT G+ +++D + IR + + +AD + LV D+ Sbjct: 253 RDLLRESLQVGGLPLHIVDTAGLRDSEDPIEREGIRRARDALANADCILLVCDAR---HT 309 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCD 176 D L + LI I NKID A+ V E T + +SA G G D Sbjct: 310 EAGDALPADLPETIPLIRIFNKIDLT--------GAPASLTVERETTVIHLSARTGEGVD 361 >gi|323704247|ref|ZP_08115826.1| GTP-binding protein Obg/CgtA [Thermoanaerobacterium xylanolyticum LX-11] gi|323536313|gb|EGB26085.1| GTP-binding protein Obg/CgtA [Thermoanaerobacterium xylanolyticum LX-11] Length = 427 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 71/167 (42%), Gaps = 16/167 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG NAGKSTL+ A+ I + T + G+V K V D PG+ Sbjct: 165 VGLVGFPNAGKSTLLASCTNARPKIANYPFTTLYPNL-GVVYHKGKSFVMADIPGLIEGA 223 Query: 85 DSYHKLMIRLSWSTIKHAD---IVCLVVDSHRELKVNIHDLLK---EIAKRSSRL----- 133 HK L + +KH + ++ +VD + I D K E+ S RL Sbjct: 224 ---HKGE-GLGYDFLKHIERTKLILHIVDVSDPMSDPIDDFKKINDEMYLYSDRLKEIPQ 279 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 I +LNKID V P + IA F +SA G G D +L+ Sbjct: 280 IAVLNKIDAVDPSSINLDDLIAKMKNLGYDVFKISAMTGDGIDGLLD 326 >gi|317453539|emb|CBL87879.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|295676899|ref|YP_003605423.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1002] gi|295436742|gb|ADG15912.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1002] Length = 445 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D G +A+VG N GKSTL+N VG + I TTR + Sbjct: 161 EVAYAGQPEESEEDKEARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++ KL F++ K +SA + G Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGP 340 Query: 175 ----CDDVLNYLCSTLP 187 DD S LP Sbjct: 341 LMRSVDDAYTAAMSKLP 357 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 15/163 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILILNK 139 AKD M R + ++ +D+V +VD L +I D L+++ + + L++NK Sbjct: 64 AKDGILHEMARQTRQAVEESDVVVFIVDGRNGLAPQDKSIADYLRKVGR---PIFLVVNK 120 Query: 140 IDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 + +K +A + + +SA G G D++N Sbjct: 121 AEGMK------YTNVAADFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|239947026|ref|ZP_04698779.1| ribosome-associated GTPase EngA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921302|gb|EER21326.1| ribosome-associated GTPase EngA [Rickettsia endosymbiont of Ixodes scapularis] Length = 447 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 + LVG N GKSTL NR K +IV V R G + E + +DTPG+ Sbjct: 6 ITLVGRPNVGKSTLFNRLSTRKKAIVHDLPGVTRDRKYTEGKIGSFE--FLLIDTPGLEE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 DS + ++ + I AD++C +VD + + L + K + IL++NK C Sbjct: 64 NPDSMGEKLMEQTTKAILEADLICFMVDGRSGILPDDKLLGSFVRKYNKPAILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G ++ + + + LP Sbjct: 122 ---EKAFDFDKEYYKLGF-DSMVAISAEHGTGLINLYDEIIAKLP 162 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D + C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 171 IADPIKGDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIK 230 Query: 74 FLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S KL + ++IK A+ V L++D+ LK ++ + Sbjct: 231 LIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALVPLKQQDLNIASHVVNEG 290 Query: 131 SRLILILNKIDCVK 144 +++++NK D VK Sbjct: 291 RSIVIVVNKWDLVK 304 >gi|159040727|ref|YP_001539979.1| GTP-binding protein HSR1-related [Caldivirga maquilingensis IC-167] gi|157919562|gb|ABW00989.1| GTP-binding protein HSR1-related [Caldivirga maquilingensis IC-167] Length = 409 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 18/172 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL G T AGK+TL NR G + K T S +V+ V DT G Sbjct: 189 VALTGYTMAGKTTLFNRLTGEG-KYIDGKAFATLSTYSRLVNFNGKYAVITDTVGFI--- 244 Query: 85 DSYHKLMIRLSWSTIK---HADIVCLVVDS-------HRELKVNIHDLLKEIAKRSSRLI 134 D +++ +STI+ +AD++ L++DS R++ +I +L +IA S++I Sbjct: 245 DDLPPVLVESFYSTIREIAYADLILLIIDSSDSAEEVRRKVSSSIS-ILNDIAVPMSKVI 303 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + NKID VK L + KL +SA G G + + + + S L Sbjct: 304 PVFNKIDEVKDTDSLLNVALEFKL---SNPLFISAKAGIGLESLKSRIASEL 352 >gi|122702717|emb|CAL88548.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|93004282|gb|ABE97061.1| YphC [Helicobacter pylori] gi|122701353|emb|CAL88066.1| GTPase [Helicobacter pylori] gi|122701445|emb|CAL88112.1| GTPase [Helicobacter pylori] gi|317452817|emb|CBL87844.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453541|emb|CBL87880.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|313887368|ref|ZP_07821058.1| tRNA modification GTPase TrmE [Porphyromonas asaccharolytica PR426713P-I] gi|312923136|gb|EFR33955.1| tRNA modification GTPase TrmE [Porphyromonas asaccharolytica PR426713P-I] Length = 470 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 A++GA N GKS+L+N + + +IV+ TTR V G ++ + + +DT G+ Sbjct: 219 TAIIGAPNVGKSSLLNALLQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTT 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVV----DSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D +L I S+ I A ++ V+ + EL+ + ++L+ + S LI++LNK Sbjct: 279 DLVEQLGIERSYQQISSARLILWVIAPPLPTWDELEAQLSEILR-LTSPDSTLIILLNKR 337 Query: 141 DCV 143 D + Sbjct: 338 DLL 340 >gi|218459464|ref|ZP_03499555.1| GTP-binding protein EngA [Rhizobium etli Kim 5] Length = 191 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 6/190 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V TR G +DT G+ A Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEARLMGLNFTIIDTAGLEEA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++S M + + I AD+ VVD+ L L + + +R ++L+ NK + Sbjct: 64 DEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSEA 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLP 202 + A + + + +SA G G D+ + + + Y+ + LP Sbjct: 124 RGSDSGFYDAYT----LGLGEPKPISAEHGEGMLDLRDAIVEAIG-KDRAYAKEGCRGLP 178 Query: 203 MFHFTAEITR 212 M F TR Sbjct: 179 MLIFRRVKTR 188 >gi|167587055|ref|ZP_02379443.1| GTP-binding protein EngA [Burkholderia ubonensis Bu] Length = 445 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 13/181 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR +A+VG N GKSTLVN +G I TTR + +DT G Sbjct: 177 SRGTKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAG 236 Query: 80 IFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + ++ K + + +I A++V L++D+ +++ + + ++ L++ Sbjct: 237 LRRRGKVFEAIEKFSVVKTLQSIADANVVILLLDARQDISDQDAHIAGFVVEQGRALVVG 296 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLCSTL 186 +NK D + P R +A++ KL F+E K +SA + G DD + L Sbjct: 297 VNKWDGLDPHVRERTKADLTRKLKFLEFAKFHFISAAEKTGIGPLMRSVDDAYGAAMAKL 356 Query: 187 P 187 P Sbjct: 357 P 357 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKSEG 123 Query: 143 VK 144 +K Sbjct: 124 MK 125 >gi|83319844|ref|YP_424546.1| GTP-binding protein EngA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535633|sp|Q2SRR7|DER_MYCCT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|83283730|gb|ABC01662.1| GTP-binding protein engA [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 435 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 4/166 (2%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 + VA+VG N GKS+L NR + K SIV +K TR + + + +DT GI Sbjct: 2 KKKIVAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILIDTGGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + + I+ AD++ VVD L + + K + K +IL +NK Sbjct: 62 SVDQQLFSNEIQIQTQIAIEQADVIIFVVDFLNRLDKDDKIIAKILHKSKKPVILAINKY 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D ++ +++ + + +S+T G G D+L+ + S + Sbjct: 122 D----KKTIDEHNYEFMNLGFSDLYFISSTHGIGIGDLLDKVISYI 163 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S +A++G N GKS+LVN V IV+ TT V S + + + +DT GI Sbjct: 174 STKIAIIGKPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKKKYIVIDTAGIR 233 Query: 82 NAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + K S S I ++DIV L++D+ + + ++ I +I+++N Sbjct: 234 KKSKLGQTVEKYSYLRSLSAIANSDIVLLMIDATKPITDQDTNIGGLIYDEKKPVIIVVN 293 Query: 139 KIDCV--KPERLLEQAE 153 K D + K E++L++ E Sbjct: 294 KWDLIKNKQEQILKKEE 310 >gi|86150742|ref|ZP_01068958.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 260.94] gi|315124454|ref|YP_004066458.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841912|gb|EAQ59158.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 260.94] gi|315018176|gb|ADT66269.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 442 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ + LS +++ ADI+ V D+ R + +A ++ ILNK D Sbjct: 277 DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 >gi|46191228|ref|ZP_00206719.1| COG1160: Predicted GTPases [Bifidobacterium longum DJO10A] Length = 597 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 161 GVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 220 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 221 DVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDD 280 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L AE + + + + +SA G G D+L+ L A Sbjct: 281 QASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALDKLKQA 323 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IV+ +F+DT GI K Sbjct: 338 VALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAGI---K 394 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + + ++ ++L+ N Sbjct: 395 RRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLVFN 454 Query: 139 KIDCV 143 K D + Sbjct: 455 KWDAM 459 >gi|312128081|ref|YP_003992955.1| gtp-binding proten hflx [Caldicellulosiruptor hydrothermalis 108] gi|311778100|gb|ADQ07586.1| GTP-binding proten HflX [Caldicellulosiruptor hydrothermalis 108] Length = 509 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+++G TNAGKSTL+NR A V +V K+ T V K + + DT G Sbjct: 352 VVSIIGYTNAGKSTLMNRISKADV-LVEDKLFATLDTTTRRVYHKGKEFLLTDTVGFI-- 408 Query: 84 KDSYHKLMIRLSWS--TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 ++ H L+ S + +K+++++ VVD + +KV+ DLLK++ + LI + Sbjct: 409 RNLPHHLVEAFSSTLEEVKYSNLILNVVDISDPYYYDHIKVS-EDLLKQLGAENIPLIRV 467 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 NKID V L ++ + L + +SA G G D +L+ + Sbjct: 468 YNKIDKVD----LSSVDVFDNLPHV----FISAQDGRGIDTLLDMIV 506 >gi|292806644|gb|ADE42452.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDC-VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + L L Sbjct: 122 NKIDNDKKKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|163868472|ref|YP_001609681.1| GTP-binding protein HflX [Bartonella tribocorum CIP 105476] gi|161018128|emb|CAK01686.1| GTP-binding protein HflX [Bartonella tribocorum CIP 105476] Length = 445 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 9/163 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R +V I+ DT G + Sbjct: 219 VVALVGYTNAGKSTLFNRLSGADVLAKNMLFATLDPTLRKVVLPHGKTILLSDTVGFISN 278 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEI---AKRSSRLILI 136 + R + + AD++ V D HR ++ ++L + + +I + Sbjct: 279 LPTNLIAAFRATLEEVVEADLILHVRDMLDLDHRTHAQDVLEVLSSLDIDIDDTEHIIEV 338 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NKID V E+ L + + K + +VSA KG G D +L Sbjct: 339 WNKIDMVD-EQALNVLQTSAK-TRLNPALIVSALKGDGLDQLL 379 >gi|148241565|ref|YP_001226722.1| GTP-binding protein EngA [Synechococcus sp. RCC307] gi|166225929|sp|A5GR60|DER_SYNR3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|147849875|emb|CAK27369.1| GTP-binding protein engA [Synechococcus sp. RCC307] Length = 452 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 8/157 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N G +IV+ TTR + + + LDT GI + Sbjct: 179 MAIVGRPNVGKSSLLNTVCGENRAIVSPIRGTTRDTIDTSIEREGQSWKLLDTAGIRRRR 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I S+ I+ +D+ LV+D+ + L I + ++++NK D Sbjct: 239 SVNYGPEFFGINRSFKAIERSDVCVLVIDAEEGVTEQDQRLAGRIEEEGRACLVVVNKWD 298 Query: 142 CVKPERLLEQA---EIANKLVFIEKTFM--VSATKGH 173 V+ + A E+ +KL F+E M +SA G Sbjct: 299 LVEKDSHTMPAMEKELRSKLYFLEWAPMLFISALTGQ 335 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G + ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSRDAIVHDEPGVTRDRTYQEGFWGGRTFRVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR S + A + ++VD + L + + ++ ++L +NK Sbjct: 64 DDDSEFLPEIREQASLAMAEACVALVIVDGQQGLTAADEAIAAWLRQQKCPVLLGVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C PE+ L A L E +SA G G D+L+ + LP Sbjct: 122 CESPEQGLAMAAEFWALGLGEPK-PISAIHGAGTGDLLDQVLDFLP 166 >gi|115605755|gb|ABJ15859.1| YphC [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKRFNISVSHNRGISALIDAVLSALDL 168 >gi|152978550|ref|YP_001344179.1| GTP-binding protein EngA [Actinobacillus succinogenes 130Z] gi|150840273|gb|ABR74244.1| small GTP-binding protein [Actinobacillus succinogenes 130Z] Length = 503 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANISGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I+ AD+V +VD+ L + I + L++ ++S I++ NK Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTPADIGIANYLRQ--RQSKTTIVVANKT 122 Query: 141 DCVKPE 146 D + + Sbjct: 123 DGIDAD 128 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 +A+VG N GKSTL NR +G +V TTR + I E++ Q +DT G+ Sbjct: 217 IAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIY-IPMERDGQHYTIIDTAGVRKR 275 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 276 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKW 335 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ Y C+T Sbjct: 336 DGLDQDIKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFESVREAYACAT 388 >gi|317014244|gb|ADU81680.1| GTP-binding protein Der [Helicobacter pylori Gambia94/24] Length = 463 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + E+A A + K+F +S + G +++ + + L L Sbjct: 128 DKEK---ERA-YAFSSFGVPKSFNISVSHNRGISALIDAVLNALNL 169 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 204 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 263 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 264 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 322 >gi|258423240|ref|ZP_05686132.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635] gi|257846569|gb|EEV70591.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635] Length = 459 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD++ V++++ L + L + + ++ +I+I+NK Sbjct: 279 IRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNK 336 Query: 140 IDC 142 +D Sbjct: 337 MDL 339 >gi|238063470|ref|ZP_04608179.1| small GTP-binding protein [Micromonospora sp. ATCC 39149] gi|237885281|gb|EEP74109.1| small GTP-binding protein [Micromonospora sp. ATCC 39149] Length = 507 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T R + DT G Sbjct: 280 AVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRKATAPDGRIYTLSDTVGFV-- 337 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H+++ R + + AD+V VVD E + ++L E+ +L++ Sbjct: 338 RHLPHQIVEAFRSTLEEVAEADLVVHVVDGAHPDPEEQVRAVREVLAEVGADRLPELLVI 397 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D E LL + VF SA G G D+V + + LP Sbjct: 398 NKTDAADEETLLRLKRLWPDAVF------ASARSGRGLDEVRAAIEARLP 441 >gi|110677827|ref|YP_680834.1| tRNA modification GTPase TrmE [Roseobacter denitrificans OCh 114] gi|123362327|sp|Q16CZ5|MNME_ROSDO RecName: Full=tRNA modification GTPase mnmE gi|109453943|gb|ABG30148.1| tRNA modification GTPase TrmE, putative [Roseobacter denitrificans OCh 114] Length = 428 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 16 VQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 V + RSG +ALVGA NAGKSTL+N+ G +I + TTR ++ + + F Sbjct: 206 VAERIRSGFEIALVGAPNAGKSTLLNKLAGRDAAITSEIAGTTRDVIEVRMDLGGLPVTF 265 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 LDT G+ + D + I + + AD+ Sbjct: 266 LDTAGLRQSADEIETIGIERAIKRAQEADL 295 >gi|326333217|ref|ZP_08199464.1| GTP-binding protein HflX [Nocardioidaceae bacterium Broad-1] gi|325948861|gb|EGD40954.1| GTP-binding protein HflX [Nocardioidaceae bacterium Broad-1] Length = 494 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 37/215 (17%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T R +E DT G Sbjct: 277 AVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRRTTTEDGRVYTMSDTVGFV-- 334 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIAKRSSRLILIL 137 + H+L+ R + + AD+V VVD SH + + + ++ EI ++++ Sbjct: 335 RHLPHQLVEAFRSTLEEVADADLVVHVVDGSHPDPEGQLAAVREVFAEIGAGDVPELVVI 394 Query: 138 NKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 NK D P RLL +AE + VSA G G D + + + LP Sbjct: 395 NKADIADPLVISRLL-RAE--------PHSVAVSAKTGEGIDAAIKAVENDLP------- 438 Query: 195 ADQISDLPMFHFTAEITREKLFL----HLHKEIPY 225 P F+A + E+ L H H EI + Sbjct: 439 ------RPGVEFSALVPYERGDLVNRIHQHGEIDH 467 >gi|206560243|ref|YP_002231007.1| GTP-binding protein EngA [Burkholderia cenocepacia J2315] gi|238693091|sp|B4EAW5|DER_BURCJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|198036284|emb|CAR52180.1| GTP-binding protein EngA [Burkholderia cenocepacia J2315] Length = 445 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D+ G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGQPEEAEEDDPSRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D R +A++ KL F++ K+ +SA K G Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGFDDHARDRAKADLTRKLKFLDFAKSHFISAAKKTGIGA 340 Query: 175 ----CDDVLNYLCSTLP 187 DD S LP Sbjct: 341 LMRSVDDAYAAAMSKLP 357 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|158424703|ref|YP_001525995.1| GTP-binding protein [Azorhizobium caulinodans ORS 571] gi|158331592|dbj|BAF89077.1| GTP-binding protein [Azorhizobium caulinodans ORS 571] Length = 459 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A+V T +R + ++++ DT G + Sbjct: 224 VVALVGYTNAGKSTLFNRLTQAEVMAQDLLFATLDPTLRAVDLPHGTRVILSDTVGFISE 283 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHREL---KVNIHDLLKEIA---KRSSRLILI 136 + R + + AD++ V D SH + ++ D+L E+ + RL+ + Sbjct: 284 LPTQLVAAFRATLEEVIEADVILHVRDISHPDTDAQAADVKDVLTELGIDVEAGGRLVEV 343 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIE---KTFMVSATKGHGCDDVLNYL 182 NKID + PE E+ ++ N E + +VSA G G +L+ + Sbjct: 344 WNKIDIL-PE--AEREQLLNTAARAEPEARPELVSALTGEGAPALLDRI 389 >gi|5199325|gb|AAD40807.1|AF145049_8 ATP/GTP-binding protein [Streptomyces fradiae] Length = 425 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 32/235 (13%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL G TNAGKS+L+NR GA V + T VR V DT G F + Sbjct: 201 SVALAGYTNAGKSSLLNRLTGADVLVKDALFATLDPTVR-RVRAGGRVCTLTDTVG-FVS 258 Query: 84 KDSYHKL-MIRLSWSTIKHADIVCLVVDSH-----RELKVNIHDLLKEIAKRSSRLILIL 137 + +H + R + + AD+V VVDS R+++ + ++ +I IL+ Sbjct: 259 RLPHHLVDAFRSTLEEVTEADLVLHVVDSSHPDPLRQIE-TVRAVIGDIGGAGVPEILVA 317 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTF-MVSATKGHGCDDVLNYLCSTLP--------L 188 NK D PE LE +L+ E +VSA G G D +L+ + L L Sbjct: 318 NKADAA-PEGALE------RLLAAEPAAEVVSARTGAGVDRLLDRVAERLSGTGLQMELL 370 Query: 189 APWVYSADQISDLPMFHFTAEITREK---LFLHLHKEIPYSSCVVTEKWEEKKDG 240 P+ L H + RE+ + L +P E E++DG Sbjct: 371 LPYTEGG----LLTRIHDEGTVLREEHTGTGVRLTARVPERLAAEVEPHRERQDG 421 >gi|283853370|ref|ZP_06370617.1| GTP-binding proten HflX [Desulfovibrio sp. FW1012B] gi|283571238|gb|EFC19251.1| GTP-binding proten HflX [Desulfovibrio sp. FW1012B] Length = 579 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 5/129 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL+N G+ V T R + + +I+ DT G Sbjct: 393 VVSLVGYTNAGKSTLLNTLTGSAVLAENRLFATLDPTSRRLRFPSDREIILTDTVGFIRE 452 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIAKRSSRLILILNK 139 K R + ++ AD++ V D SH E+ + D+L+E+ +L+LNK Sbjct: 453 LPKELKEAFRATLEELEAADLLVAVADASHPEVDGQVAAVADILQEMELGDIPRLLVLNK 512 Query: 140 IDCVKPERL 148 D V PE L Sbjct: 513 WDAV-PEDL 520 >gi|282848771|ref|ZP_06258166.1| tRNA modification GTPase TrmE [Veillonella parvula ATCC 17745] gi|282581557|gb|EFB86945.1| tRNA modification GTPase TrmE [Veillonella parvula ATCC 17745] Length = 461 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG NAGKS+L+N + +IVT TTR + ++ K + +DT G Sbjct: 221 RDGITTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVKGISLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D+ L + + I ADIV V+D L ++L ++ ++ I++LNK Sbjct: 281 IRDTQDTVEALGVERARDYINKADIVLCVIDGSTPLNPEEIEILTSVSGLNT--IVLLNK 338 Query: 140 IDCVK 144 D + Sbjct: 339 SDVAQ 343 >gi|212690523|ref|ZP_03298651.1| hypothetical protein BACDOR_00005 [Bacteroides dorei DSM 17855] gi|212666872|gb|EEB27444.1| hypothetical protein BACDOR_00005 [Bacteroides dorei DSM 17855] Length = 455 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS+++N F+G +IVT TTR + + +DT GI Sbjct: 197 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKKNK 256 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S +I+++D+ L++D+ R ++ ++ I + L++++NK Sbjct: 257 VNEDLEYYSVI--RSIRSIENSDVCILMLDASRGIEGQDLNIFSLIQRNQKGLVVVVNKW 314 Query: 141 DCVK 144 D V+ Sbjct: 315 DLVE 318 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 11/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR + +IV + TTR G + +DT G + N+ Sbjct: 23 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWVVNS 82 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + + + + I AD++ VVD +L + + +L+ K +I++ NK Sbjct: 83 GDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKK---PVIMVANKT 139 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 D E AE + + + +SA G G ++L+ + Sbjct: 140 D--NNELQYNAAEFYK--LGLGDPYCISALSGSGTGELLDLVVG 179 >gi|122702273|emb|CAL88327.1| GTPase [Helicobacter pylori] Length = 168 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR K++I + TTR I + ++ ++ LDT G+ A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKEKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 64 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD++ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 119 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 120 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISVLIDAILHALGL 166 >gi|122701611|emb|CAL88195.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122700639|emb|CAL87908.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G ++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----TPKSFNISVSHNRGISALIEAVLNALNL 168 >gi|114562298|ref|YP_749811.1| GTP-binding protein EngA [Shewanella frigidimarina NCIMB 400] gi|122300418|sp|Q085U2|DER_SHEFN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114333591|gb|ABI70973.1| small GTP-binding protein [Shewanella frigidimarina NCIMB 400] Length = 488 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 9/178 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLAGYEFIVVDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S + I+ AD+V + D+ + + + + R ++ NK+D + Sbjct: 64 EEGIETKMAEQSLAAIEEADVVLFMTDARAGMTAADLAIAQHLRSRDKVTFVVANKVDGI 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 + E + + + + + ++A +G G ++++Y L P+ + + +L Sbjct: 124 DADSAC--GEFWS--LGLGEVYQMAAAQGRGVTNMIDY-----ALTPYAEAMGIVREL 172 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL+NR +G + +V + TTR + +S + + V +DT G+ Sbjct: 202 LAIIGKPNVGKSTLINRILGEERVVVYDEPGTTRDSIYIPMSREGREYVLIDTAGVRRRS 261 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + ++ A++V LV+D+ + LL L++ +NK D Sbjct: 262 KVNEVIEKFSVIKTLKAVEDANVVLLVIDAREGIAEQDLGLLGFTLNAGRALVIAINKWD 321 Query: 142 CVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + +R+ ++E+ +L FI+ + +SA G G Sbjct: 322 GIDQKVKDRV--KSELDRRLGFIDFARIHFISALHGTGV 358 >gi|308270408|emb|CBX27020.1| GTP-binding protein engA [uncultured Desulfobacterium sp.] Length = 442 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA++G N GKS+L+NR +G IV+ TTR V + K Q + +DT GI Sbjct: 177 VAVIGRPNVGKSSLINRILGKDRHIVSDVPGTTRDAVDSLCEIKGKQYLIIDTAGIRRKS 236 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K I + ++ DI +++D+ + + +R I +LNK D Sbjct: 237 KVSKKIEKFSIIKALKSLDRCDIALIIIDASEGITDQDISIAGYAYERECGCIFLLNKWD 296 Query: 142 CVK-----PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 V+ ++ +EQ + K + +SA G G + + Sbjct: 297 TVEKGDKIKKKFIEQLKYEAKYLNYAPAMTISAKTGLGVAKIFD 340 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 7/167 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + +VG N GKST NR +K +IV TR + + + +DT G Sbjct: 5 ITIVGRPNVGKSTFFNRVTRSKDAIVDDFPGVTRDCIHRDAVWNDVEFTLVDTGGFAYGD 64 Query: 85 DSYHKLMIRLSW-STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + +R+ +I AD + +++D + D+++ + S + ++NKID Sbjct: 65 EDDINSKVRMQVKQSIDDADAIIMMLDGKSGVSPFDSDIVQLLRSVSKPVFYVVNKIDGD 124 Query: 144 KPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + E L E + IE+ + +S+ G+G L+ L S P A Sbjct: 125 EKEINLYEFYSLG-----IERIYSLSSEHGYGVGSFLDDLVSIFPKA 166 >gi|292806424|gb|ADE42342.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--V 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|254179556|ref|ZP_04886155.1| GTP-binding protein EngA [Burkholderia pseudomallei 1655] gi|184210096|gb|EDU07139.1| GTP-binding protein EngA [Burkholderia pseudomallei 1655] Length = 445 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A+ + + +SAT G G +D++N Sbjct: 124 MK------YTAVASDFYELGLGDPRAISATHGDGVNDMIN 157 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + E ++ + + G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGEPQESEEAAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++A KL F+E K +SA + G Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGA 340 Query: 175 ----CDDVLNYLCSTLP 187 DD LP Sbjct: 341 LMRSVDDAYAAAMKKLP 357 >gi|122702435|emb|CAL88408.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGAPKSFNISVSHNRGISALIDAVLSALDL 168 >gi|71901963|ref|ZP_00684014.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|71728268|gb|EAO30448.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] Length = 451 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 16/152 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG N GKS+L+N +G+ +IVT TTR +R V + V +DT G+ D+ Sbjct: 225 LVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLRESVHFHGLEFVLVDTAGLRGEGDA 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILILNKIDCV-K 144 + +R + + ++ AD+ +V+D+ I L L + R++ I NK+D + + Sbjct: 285 IEREGMRRTLNELQRADLALVVLDA---CDPQIGSLALADALTSVPRVLWIHNKLDLLTE 341 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 P +L+ I VSA G G D Sbjct: 342 PPSVLDTDVIP-----------VSAMTGAGLD 362 >gi|238019393|ref|ZP_04599819.1| hypothetical protein VEIDISOL_01257 [Veillonella dispar ATCC 17748] gi|237864092|gb|EEP65382.1| hypothetical protein VEIDISOL_01257 [Veillonella dispar ATCC 17748] Length = 444 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 5/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N V ++SIV TR + + +DT GI Sbjct: 5 LVAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFI 64 Query: 84 KDSYHKL--MIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 D+ H + M+RL I+ AD++ VVD + + V + + I + S + ++L++NK Sbjct: 65 TDNSHVIPKMMRLQAELAIEEADVILFVVDGKQGI-VPADEEVANILRASGKPVVLVVNK 123 Query: 140 IDCVKPE 146 ID V E Sbjct: 124 IDSVNQE 130 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+ + VA++G N GKS+L N +G IV+ TTR + + + + V +DT Sbjct: 174 DDEDTIHVAVIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHGDQKFVLIDT 233 Query: 78 PGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ +++ + I S ++ +DIV LV+D+ + + + +I Sbjct: 234 AGMRRKSKIEEAVERYSIVRSLRSVDRSDIVVLVLDAQDGVTEQDKKIAGYAYEAGKGVI 293 Query: 135 LILNKIDCVK 144 +++NK D ++ Sbjct: 294 IVVNKWDLIE 303 >gi|86749568|ref|YP_486064.1| GTP-binding protein EngA [Rhodopseudomonas palustris HaA2] gi|123004191|sp|Q2IXA7|DER_RHOP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86572596|gb|ABD07153.1| GTP-binding protein [Rhodopseudomonas palustris HaA2] Length = 459 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKST +NR +G + + + TTR + V+ K + DT G+ Sbjct: 190 VAIVGRPNAGKSTFINRLLGEDRLLTSPEAGTTRDSIAVEVNWKGREFRIFDTAGLRRRS 249 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 ++ KL + + ++ A++V L++DS E + I DL I + L++ +N Sbjct: 250 RIEEKLEKLSVADALRAVRFAEVVVLMMDSQNRFEEQDLRIADL---IEREGRALVIAVN 306 Query: 139 KIDCVK 144 K D V+ Sbjct: 307 KWDLVE 312 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NAK 84 A++G N GKSTL NR VG K+++V TR G + + +DT G+ AK Sbjct: 6 AIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTIIDTAGLDEGAK 65 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 S M + + + I+ AD + V D+ L N + A+R+++ ++L+ NK Sbjct: 66 GSLTARMQQQTETAIELADALMFVFDARAGLTPN-DRAFADFARRANKPVVLVANK 120 >gi|86740164|ref|YP_480564.1| GTP-binding protein EngA [Frankia sp. CcI3] gi|86567026|gb|ABD10835.1| Small GTP-binding protein domain [Frankia sp. CcI3] Length = 487 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 50 VVAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDAVWSGRRFTLVDTGGWEPD 109 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILILNK 139 + + + + AD V +VD + D + +A+ R +IL+ NK Sbjct: 110 ATGLAAQVSEQARAALDTADAVLFIVD----VVTGATDADEAVARVLHRCGLPVILVANK 165 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +D V+ E A + + + VSA G G D+L+ + + LP AP Sbjct: 166 VDDVR----FEADAAALWSLGLGEPHPVSALHGRGSGDLLDAVLAALPEAP 212 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG----I 80 VAL+G N GKS+L+N+ G++ S+V TTR V +V+ + +F+DT G + Sbjct: 225 VALIGRPNVGKSSLLNKLAGSRRSLVHDVAGTTRDPVDELVTVGGEEWMFIDTAGLRRRV 284 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A + + +R + S ++ A++ +++ + + ++ + L+L NK Sbjct: 285 REASGAEYYSSLRTA-SALEAAEVAIVLLAADEPVTEQDQRVISMVVDAGRALVLAFNKW 343 Query: 141 DCVKPERLLE-QAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D V +R L + EI L V VSA G D + L + L Sbjct: 344 DLVDTDRRLTLEREIVRDLGRVAWAPRVNVSARTGRATDRLAPALRTAL 392 >gi|28883199|gb|AAO50079.1| tRNA-modification protein [Pseudomonas syringae pv. phaseolicola] Length = 461 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ +++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|292806430|gb|ADE42345.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452821|emb|CBL87846.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINLNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|149197584|ref|ZP_01874634.1| tRNA modification GTPase [Lentisphaera araneosa HTCC2155] gi|149139154|gb|EDM27557.1| tRNA modification GTPase [Lentisphaera araneosa HTCC2155] Length = 452 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 4/129 (3%) Query: 21 RSGCVALVGAT-NAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G NAGKS+L+N +G +IVT TTR + + + DT G Sbjct: 216 RDGVKVIIGGPPNAGKSSLMNHVLGRDRAIVTDIAGTTRDTLEEYTRIRGIPLKITDTAG 275 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I A+D + I S +K A ++ ++D R L+ L E K + LI+ILNK Sbjct: 276 IREAEDIVERTGIERSKQALKEAQLILWLMDLSRPLE---DQLPPEDFKSDAPLIVILNK 332 Query: 140 IDCVKPERL 148 D + L Sbjct: 333 SDIALEQEL 341 >gi|122702561|emb|CAL88470.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDTKLFREVFKINPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + + K+F +S + G +++ + + L L Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122701387|emb|CAL88083.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRVLNL 168 >gi|122700917|emb|CAL88047.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|331268843|ref|YP_004395335.1| GTP-binding protein [Clostridium botulinum BKT015925] gi|329125393|gb|AEB75338.1| GTP-binding protein [Clostridium botulinum BKT015925] Length = 397 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDT 77 NS V G TN+GKS+++N VG ++S+V++ K TT + + + ++F+DT Sbjct: 6 NSNRKHVVFYGKTNSGKSSILNAIVGQEISLVSNIKGTTTDPVSKAMELIPFGPVLFIDT 65 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 GI + K L + + T+K D V+D + + D ++ K I ++ Sbjct: 66 AGI-DDKSELGNLRVERTLKTLKKTDFAVYVMDINNIDENEYKDFQEKFKKHRIPYITVI 124 Query: 138 NKIDCV 143 NKID V Sbjct: 125 NKIDTV 130 >gi|294496533|ref|YP_003543026.1| ferrous iron transporter B [Methanohalophilus mahii DSM 5219] gi|292667532|gb|ADE37381.1| ferrous iron transport protein B [Methanohalophilus mahii DSM 5219] Length = 642 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 4/164 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + D +A VG + GKS +R G V +V++ TT + RG V + +I + Sbjct: 1 MHDGDHDMTIAFVGNPSVGKSAFFSRVTGVGV-MVSNYPGTTVEMTRGTVKVGQKKIDIV 59 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 D PGI++ S + + ++ D++ VVD+ R L+ N++ L +I + +++ Sbjct: 60 DLPGIYSLGTSTEDERVSKEYLVREYPDVIVNVVDATR-LERNLY-LTLQILELGVPVVI 117 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 LN++D + + A ++++ + V ATKG G D+VL Sbjct: 118 ALNQLDAAREMGIDIDAPKLSQILGVPVVPTV-ATKGIGLDEVL 160 >gi|269302625|gb|ACZ32725.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae LPCoLN] Length = 442 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 26/180 (14%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 I+ F+E + Q S + L G N GKS+L+N + +IVTH TTR I+ Sbjct: 203 ISSFDEGQRLAQGTS----LILAGKPNVGKSSLLNALLQKNRAIVTHIPGTTRDILEEQW 258 Query: 66 SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 + +I LDT G + K I + S ++ AD + V+D+ + L+ DL K Sbjct: 259 LLQGKRIRLLDTAGQRTTDNDIEKEGIERALSAMEEADGILWVIDATQPLE----DLPKI 314 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCDDVLNYL 182 + + S L+ NK D P F++ + F +SA G G V L Sbjct: 315 LFTKPS--FLLWNKADLAPPP-------------FLDTSLPQFAISAKTGEGLTQVKQAL 359 >gi|237725292|ref|ZP_04555773.1| GTP-binding protein engA [Bacteroides sp. D4] gi|229436558|gb|EEO46635.1| GTP-binding protein engA [Bacteroides dorei 5_1_36/D4] Length = 437 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S +I+++D+ L++D+ R ++ ++ I + L++++NK Sbjct: 239 VNEDLEYYSVI--RSIRSIENSDVCILMLDASRGIEGQDLNIFSLIQRNQKGLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 11/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR + +IV + TTR G + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + + + + I AD++ VVD +L + + +L+ K +I++ NK Sbjct: 65 DDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKK---PVIMVANKT 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 D E AE + + + +SA G G ++L+ + Sbjct: 122 D--NNELQYNAAEFYK--LGLGDPYCISALSGSGTGELLDLVVG 161 >gi|219685816|ref|ZP_03540625.1| tRNA modification GTPase TrmE [Borrelia garinii Far04] gi|219672649|gb|EED29679.1| tRNA modification GTPase TrmE [Borrelia garinii Far04] Length = 464 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 + L G+ N GKS+L N F+ SIV+ TTR + S + I+F DT G+ + Sbjct: 225 LVLAGSVNVGKSSLFNMFLKKDRSIVSSYPGTTRDYIEA--SFELDGILFNLFDTAGLRD 282 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A + +L I S S IK A +V V+D L L + K +S+++ +LNKID Sbjct: 283 ADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTREDF-LFIDSNKSNSKILFVLNKID 340 >gi|296454185|ref|YP_003661328.1| small GTP-binding protein [Bifidobacterium longum subsp. longum JDM301] gi|296183616|gb|ADH00498.1| small GTP-binding protein [Bifidobacterium longum subsp. longum JDM301] Length = 709 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKS+LVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + + AD V VVD + ++K + ++L +NKID Sbjct: 333 DVEGIESAIASQAQIAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKIDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E L AE + + + + +SA G G D+L+ L A Sbjct: 393 QASEYL--AAEFWK--LGLGEPYSISAMHGRGVGDLLDVALDKLKQA 435 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V IV+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ ++ ++ D+ + + ++ ++L+ N Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSDQDLKVMSTAVDAGRAIVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDAM 571 >gi|259417693|ref|ZP_05741612.1| tRNA modification GTPase TrmE [Silicibacter sp. TrichCH4B] gi|259346599|gb|EEW58413.1| tRNA modification GTPase TrmE [Silicibacter sp. TrichCH4B] Length = 428 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 27/162 (16%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG+ N GKSTL+N G +I + TTR ++ + + LDT G+ + Sbjct: 216 VAIVGSPNVGKSTLLNALAGRNAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTD 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + I+L+ ADI + + + V D + +L K D Sbjct: 276 DHVEGIGIQLAQERANAADIRVFLAEENETFDVPFRD----------GDLSLLPKAD--- 322 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ER + I+ K G G DD+++++ STL Sbjct: 323 -ERDATRGAISGK-------------TGQGIDDLVSHIASTL 350 >gi|255321603|ref|ZP_05362761.1| tRNA modification GTPase TrmE [Campylobacter showae RM3277] gi|255301459|gb|EET80718.1| tRNA modification GTPase TrmE [Campylobacter showae RM3277] Length = 439 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 4/126 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+++N + + +I++ + TTR + + + +DT GI Sbjct: 216 IAIVGKPNVGKSSILNSLLSYERAIISDEAGTTRDSIEEALKIGTHLVRIIDTAGIRKNA 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC-- 142 ++ I S IK AD++ + D+ +E +++L+ + + ++ +LNK D Sbjct: 276 GKIEQIGISYSLRAIKEADVILAIFDASQEADEQDNEILELLKRSQKKIFYVLNKCDLGV 335 Query: 143 --VKPE 146 + PE Sbjct: 336 KFISPE 341 >gi|237708020|ref|ZP_04538501.1| GTP-binding protein EngA [Bacteroides sp. 9_1_42FAA] gi|265754193|ref|ZP_06089382.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_33FAA] gi|229458006|gb|EEO63727.1| GTP-binding protein EngA [Bacteroides sp. 9_1_42FAA] gi|263234902|gb|EEZ20457.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_33FAA] Length = 437 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI----- 80 A+VG NAGKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKKNK 238 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N Y+ ++ S +I+++D+ L++D+ R ++ ++ I + L++++NK Sbjct: 239 VNEDLEYYSVI--RSIRSIENSDVCILMLDASRGIEGQDLNIFSLIQRNQKGLVVVVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 11/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA+VG N GKSTL NR + +IV + TTR G + +DT G + N+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWVVNS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + + + + I AD++ VVD +L + + +L+ K +I++ NK Sbjct: 65 GDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKK---PVIMVANKT 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 D E AE + + + +SA G G ++L+ + Sbjct: 122 D--NNELQYNAAEFYK--LGLGDPYCISALSGSGTGELLDLVVG 161 >gi|237709649|ref|ZP_04540130.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|265754281|ref|ZP_06089470.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229456285|gb|EEO62006.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263234990|gb|EEZ20545.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 396 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 21/171 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL G N+GKS+L+N G ++V+ TT ++ + + + +F+DTPG F+ Sbjct: 14 VALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVV--DSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + ++ I + I+ DI L+ ++H E K +K++ +++ +IL+LNK D Sbjct: 73 EGELGEMRIIRTLKAIERTDIALLLCEDEAHEEEK----KWMKQLEEKNIPVILLLNKAD 128 Query: 142 CVKPERLLEQAEIANKLVFIE-----KTFMVSATKGHGCDDVLNYLCSTLP 187 K +IA+ L+ IE K ++SA + G + + LP Sbjct: 129 IRK--------DIASTLLRIEKDCGQKPLVISAKERTGIKKIHQAILEKLP 171 >gi|226952825|ref|ZP_03823289.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Acinetobacter sp. ATCC 27244] gi|226836446|gb|EEH68829.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Acinetobacter sp. ATCC 27244] Length = 454 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 27/189 (14%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 206 VQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGHERAIVTDIAGTTRDVLHEKISLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 I DT G+ D + IR + I+ AD++ LV D +N D ++A Sbjct: 266 GLPITLTDTAGLRETGDVVEREGIRRAIKEIEQADLLLLVYD------LNQGDEPLQLAH 319 Query: 129 -------RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 RL+LI NK D + AE+ + F + VSA + G +++ Sbjct: 320 EYFADHLEPKRLLLIGNKCDLTG-----QPAEMTDYQGF--RHIRVSAKQDMGVQALIDA 372 Query: 182 LCSTLPLAP 190 + + P Sbjct: 373 ITAHAGFQP 381 >gi|205371919|ref|ZP_03224739.1| tRNA modification GTPase TrmE [Bacillus coahuilensis m4-4] Length = 461 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 221 REGLSTVIIGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ E +L K A +I+I+NK Sbjct: 281 IRETEDIVERIGVEKSRQVLKEADLLLLVLNHGDEFTEEDENLFK--AVEGMDVIVIVNK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|168035467|ref|XP_001770231.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678448|gb|EDQ64906.1| predicted protein [Physcomitrella patens subsp. patens] Length = 542 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-FLDTPGI-- 80 +A+VG N GKS+++N VG + +IV+ TTR + ++ Q + +DT GI Sbjct: 240 AIAIVGKPNVGKSSILNALVGEERTIVSPVSGTTRDAIDTEFADDNGQTLKLIDTAGIRR 299 Query: 81 ----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 +A L + ++ I+ +D+V LV+D+ + L + IA+ I++ Sbjct: 300 RGAVASAGSRAESLSVNRAFRAIRRSDVVALVIDALDCVTEQDFRLGERIAREGKACIIV 359 Query: 137 LNKIDCV 143 +NK D + Sbjct: 360 VNKWDTI 366 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 82/208 (39%), Gaps = 35/208 (16%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKE------------- 69 +A+VG N GKS L NR G ++IV + TR R S E Sbjct: 38 IAIVGRPNVGKSALFNRIAGGDIAIVHDEAGVTRDRLYTRAFWSTHEFMLVDTGGVLTIP 97 Query: 70 ---SQIVFLDTPG--------IFNAKDSYHKLMI-RLSWSTIKHADIVCLVVDSHRELKV 117 S V + PG I A D+ MI + + + + AD + VVD L Sbjct: 98 GDGSDAVAVTAPGGEEAVAKAIKEAYDAGLPAMIEKQAGAAVSSADSIIFVVDGQAGLTA 157 Query: 118 NIHDLLKEIAKRSS--RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 D+ + K+ S ++ L +NK C P + Q ++A VSA G G Sbjct: 158 ADIDIANWLRKKHSNKKITLAVNK--CESPTK--GQLQVAEFWTLGFTPVPVSAISGTGT 213 Query: 176 DDVLNYLCSTLPLAPWVYSADQISDLPM 203 ++L+ +C L P ++ D PM Sbjct: 214 GNLLDLVCEG--LKPAEGELEEEEDKPM 239 >gi|122701345|emb|CAL88062.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 19/171 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ AK Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--AK 67 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILN 138 D+ I+ L+ + +D++ +VD S +LK L +E+ K + L++N Sbjct: 68 DALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVIN 122 Query: 139 KIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID K ER + + K+F +S + G +++ + + L L Sbjct: 123 KIDNDKEKERACAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|122701621|emb|CAL88200.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGV--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|86607879|ref|YP_476641.1| GTP-binding protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556421|gb|ABD01378.1| GTP-binding protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 588 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 10/164 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL+N A+V + T R + + ++ DT G Sbjct: 412 VVALVGYTNAGKSTLLNALTHAQVYVADQLFATLDPTTRRLELPDQQAVLLTDTVGFLTE 471 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSSRLILILNK 139 + + + AD + VVD SH + I LL ++ + L+ NK Sbjct: 472 LPDQLVDAFQATLEEVTEADALLHVVDLSHPNWEGQIEAVETLLDKLPLATGPRQLVFNK 531 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 ID + PE + + + K VSAT G D + + L Sbjct: 532 IDRLDPE------WVEDVRLLYPKALFVSATTGQNLDQLHHTLA 569 >gi|15601970|ref|NP_245042.1| GTP-binding protein EngA [Pasteurella multocida subsp. multocida str. Pm70] gi|13431507|sp|P57812|DER_PASMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|12720316|gb|AAK02189.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 510 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 +A+VG N GKSTL NR +G +V TTR + I E++ Q +DT G+ Sbjct: 224 IAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIY-IPMERDGQHYTIIDTAGVRKR 282 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 283 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGVSDQDLSLLGFILNAGRSLVIVVNKW 342 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 343 DGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIQEAYACAT 395 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I+ AD+V +VD+ L + I + L++ +++ +++ NK Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTSADIGIANYLRQ--RQNKITVVVANKT 122 Query: 141 DCVKPE 146 D + + Sbjct: 123 DGIDAD 128 >gi|292806570|gb|ADE42415.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|257461373|ref|ZP_05626469.1| tRNA modification GTPase TrmE [Campylobacter gracilis RM3268] gi|257441096|gb|EEV16243.1| tRNA modification GTPase TrmE [Campylobacter gracilis RM3268] Length = 582 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+++N + +IV+ + TTR ++ + I +DT GI ++ Sbjct: 217 VAIVGKPNVGKSSILNSMLSFSRAIVSDEAGTTRDLIEESLQIGTHLIRIVDTAGIRHSG 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKIDCV 143 + I S AD++ V D+ RE +LK + ++ ++I +LNK D + Sbjct: 277 SKLESIGISYSLRAASEADVILAVFDASREWDAEDAQILKILREQKGKKIIYVLNKCDLL 336 Query: 144 K 144 + Sbjct: 337 R 337 >gi|256396187|ref|YP_003117751.1| GTP-binding proten HflX [Catenulispora acidiphila DSM 44928] gi|256362413|gb|ACU75910.1| GTP-binding proten HflX [Catenulispora acidiphila DSM 44928] Length = 502 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L G TNAGKS+++NR GA V + T VR + DT G Sbjct: 281 SVVLAGYTNAGKSSILNRLTGAGVLVENALFATLDPTVRRTETASGRAYTLSDTVGFV-- 338 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILIL 137 + H+L+ R + + +D+V VVD+ E + + ++ + +++L Sbjct: 339 RHLPHQLVEAFRSTLEEVGESDLVLHVVDASDEDPEGQISAVRAVFADMGAGDVKELMVL 398 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D PE L A L + +VSA G G D +L+ + LP Sbjct: 399 NKADLADPEVL------ARLLRHEPHSIIVSARTGEGIDHLLSAIERDLP 442 >gi|254510896|ref|ZP_05122963.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium KLH11] gi|221534607|gb|EEE37595.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium KLH11] Length = 386 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 15/138 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKSTL+N G + +I + TTR ++ + + LDT G+ + + Sbjct: 174 VAIVGLPNAGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTE 233 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV-----NIH-----DLLKEIA-----KR 129 D L I L+ + AD+ + D+ L + +IH DL ++ A K Sbjct: 234 DHVENLGIELARKRAESADLRVFLTDTPDVLGIAVQPDDIHVLPKSDLREDTADGISGKT 293 Query: 130 SSRLILILNKIDCVKPER 147 + ++N I CV R Sbjct: 294 GYGIDRLINNISCVLSNR 311 >gi|317495375|ref|ZP_07953744.1| ribosome-associated GTPase EngA [Gemella moribillum M424] gi|316914434|gb|EFV35911.1| ribosome-associated GTPase EngA [Gemella moribillum M424] Length = 435 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKST+ N+ +G ++SIV TR + +DT GI Sbjct: 5 TVAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + + I AD++ + + + + ++ K + K ++L +NKID Sbjct: 65 DTPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVAKLLYKTDKPVVLAVNKIDNF 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ L F + F +S + G G D+L+ +C Sbjct: 125 DMNHMIYDFY---SLGFGD-PFPISGSHGLGIGDLLDEVCKNF 163 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+L+N +G + I + TTR + + V +DT GI Sbjct: 178 SLIGRPNVGKSSLINTILGEERVIASDIAGTTRDAIDTDFKHNGDEYVVIDTAGIRKRGK 237 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + S I+ +D+V +V+++ + + + +I+++NK D Sbjct: 238 VYEACEKYSVLRSLKAIERSDVVLVVLNAEEGIIEQDKKVAGYAHESGKGVIIVVNKWDA 297 Query: 143 V 143 + Sbjct: 298 I 298 >gi|312130569|ref|YP_003997909.1| tRNA modification gtpase trme [Leadbetterella byssophila DSM 17132] gi|311907115|gb|ADQ17556.1| tRNA modification GTPase trmE [Leadbetterella byssophila DSM 17132] Length = 444 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++GA NAGKSTL+N + +IVT TTR I+ + + F+DT GI + Sbjct: 221 VAIIGAPNAGKSTLLNALLNEDRAIVTDIAGTTRDIIEDTLIIDGIKFRFIDTAGIRETE 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILILNKID 141 D + I S ++ A +V + DS + E ++ L++E L + NK D Sbjct: 281 DLIEAMGIERSKKALQDARLVLFLYDSTQGYEFLQDLQGLIRE----DQTLFWVRNKTD 335 >gi|291562499|emb|CBL41315.1| GTP-binding protein HflX [butyrate-producing bacterium SS3/4] Length = 417 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 20/189 (10%) Query: 5 EITFFNEHKDFVQ---DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ H+D V+ + S + A+VG TNAGKSTL+N+ GA + T Sbjct: 181 ELQDVERHRDVVRKQREQSGTLTAAIVGYTNAGKSTLLNKLTGAGILAEDKLFATLDPTT 240 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA---DIVCLVVD-SHRELKV 117 R + +++ DT G F K +H ++ ST++ A D++ VVD S+ ++ + Sbjct: 241 RALTLPGGEKVLLTDTVG-FIRKLPHH--LVEAFKSTLEEARYCDVILHVVDCSNPQMDM 297 Query: 118 NIH---DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +H + L+ + + +I + NK+D +P+ A+ A + + + +SA G G Sbjct: 298 QMHVVYETLRRLDIKDKEIITVFNKVD--RPD-----ADTACRDMSADYKVKLSAKTGEG 350 Query: 175 CDDVLNYLC 183 +++L+ Sbjct: 351 IEELLDLFA 359 >gi|254426878|ref|ZP_05040585.1| GTP-binding protein Obg/CgtA [Alcanivorax sp. DG881] gi|196193047|gb|EDX88006.1| GTP-binding protein Obg/CgtA [Alcanivorax sp. DG881] Length = 395 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 11/172 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G NAGKSTL+ AK + + T + + +++ V D PG+ Sbjct: 162 VGLLGMPNAGKSTLIRAISAAKPKVADYPFTTLIPNLGVVKADRYRSFVVADIPGLIEGA 221 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLI-----L 135 L IR + ++ VVD +I + E+ + S L L Sbjct: 222 ADGAGLGIRF-LKHLARTRLLLHVVDLAPMDGSSPANHIDAIADELDRFSPALAEQERWL 280 Query: 136 ILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + NKID + + EQA+ I ++L + F VSA G GCDD++ L + + Sbjct: 281 VFNKIDLMADDEAQEQADAIVDELGWQGPVFKVSAAAGVGCDDLVYALMNAI 332 >gi|122700927|emb|CAL88051.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|323496873|ref|ZP_08101905.1| GTPase HflX [Vibrio sinaloensis DSM 21326] gi|323318059|gb|EGA71038.1| GTPase HflX [Vibrio sinaloensis DSM 21326] Length = 429 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIDLSDVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE +HD+L EI ++++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVHDVLAEIEADEIPALVVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + + I I ++ VSA +G G + + + L L Sbjct: 317 NKIDNLDG----QNPRIERDDEGIPQSVWVSAMEGKGIELLFDALTERL 361 >gi|307824089|ref|ZP_07654316.1| GTP-binding proten HflX [Methylobacter tundripaludum SV96] gi|307734873|gb|EFO05723.1| GTP-binding proten HflX [Methylobacter tundripaludum SV96] Length = 401 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 18/162 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N+ GA + + T +R S+IV DT G Sbjct: 177 SVSLVGYTNAGKSTLFNKLTGADIYVADQLFATLDPTLRNCKLPNSSEIVLADTVGFI-- 234 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILIL 137 + H+L+ + + AD++ V+D+ + + ++ +L++I R + + Sbjct: 235 RHLPHELVAAFKSTLQEASEADLLLHVIDASSDDRAETIYQVNQVLEDIKANEVRQLEVF 294 Query: 138 NKIDC---VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID ++P +E+ ++ N + +SA G G D Sbjct: 295 NKIDLLTDIQPR--IERDDVGNPV-----RVWLSAETGAGVD 329 >gi|262277801|ref|ZP_06055594.1| tRNA modification GTPase TrmE [alpha proteobacterium HIMB114] gi|262224904|gb|EEY75363.1| tRNA modification GTPase TrmE [alpha proteobacterium HIMB114] Length = 445 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 7/118 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKS+ +N V + +IV+ TTR I+ ++ DT GI NAK Sbjct: 213 IAIIGPPNAGKSSFLNLLVKRQAAIVSSIKGTTRDIIEVKYHINNYPVILTDTAGIRNAK 272 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + L+ + A++ L++D + +++ NI L+ + + ++ILNK D Sbjct: 273 NKIEKTGVELALNASNEANLDILILDGTEKKIPKNILKLI------THKTLIILNKKD 324 >gi|122702215|emb|CAL88298.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGAPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|122700635|emb|CAL87906.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|150376651|ref|YP_001313247.1| GTP-binding protein EngA [Sinorhizobium medicae WSM419] gi|150031198|gb|ABR63314.1| small GTP-binding protein [Sinorhizobium medicae WSM419] Length = 477 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 5/166 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI- 80 S VA++G N GKSTL NR VG K+++V TR G + + +DT G+ Sbjct: 2 SFTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLE 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ DS M + + I AD+ VVD+ L L + + +R ++++ NK Sbjct: 62 QSSPDSLQGRMWAQTEAAIDEADLSLFVVDAKAGLTPADKTLGEMLRRRGKPVVVVANKS 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E A + + + +SA G G D+ + + + L Sbjct: 122 EARGSEGGFYDAFT----LGLGEPCPISAEHGQGMLDLRDAIVAAL 163 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 22/185 (11%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V D ++ VA+VG NAGKSTL+NRF+G + + TR + + I Sbjct: 199 VYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMF 258 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ ++ KL + + I+ A+ V +V D+ + ++ + + Sbjct: 259 DTAGMRRKAKVQEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVIREGRA 318 Query: 133 LILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +L NK D V K ERLL QA + +S G+G D ++ Sbjct: 319 AVLAFNKWDLVENWQELLADLREKTERLLPQARGI-------RAVPISGHTGYGLDRLMQ 371 Query: 181 YLCST 185 + T Sbjct: 372 AIIET 376 >gi|15618747|ref|NP_225033.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae CWL029] gi|15836371|ref|NP_300895.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae J138] gi|16752200|ref|NP_445568.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae AR39] gi|33242198|ref|NP_877139.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae TW-183] gi|14195307|sp|Q9Z768|MNME_CHLPN RecName: Full=tRNA modification GTPase mnmE gi|4377152|gb|AAD18976.1| Thiophene/Furan Oxidation Protein [Chlamydophila pneumoniae CWL029] gi|8163542|gb|AAF73725.1| thiophene and furan oxidation protein ThdF [Chlamydophila pneumoniae AR39] gi|8979212|dbj|BAA99046.1| thiophene/furan oxidation protein [Chlamydophila pneumoniae J138] gi|33236709|gb|AAP98796.1| thiophene/furan oxidation protein [Chlamydophila pneumoniae TW-183] Length = 442 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 26/180 (14%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 I+ F+E + Q S + L G N GKS+L+N + +IVTH TTR I+ Sbjct: 203 ISSFDEGQRLAQGTS----LILAGKPNVGKSSLLNALLQKNRAIVTHIPGTTRDILEEQW 258 Query: 66 SEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 + +I LDT G + K I + S ++ AD + V+D+ + L+ DL K Sbjct: 259 LLQGKRIRLLDTAGQRTTDNDIEKEGIERALSAMEEADGILWVIDATQPLE----DLPKI 314 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCDDVLNYL 182 + + S L+ NK D P F++ + F +SA G G V L Sbjct: 315 LFTKPS--FLLWNKADLTPPP-------------FLDTSLPQFAISAKTGEGLTQVKQAL 359 >gi|302871403|ref|YP_003840039.1| GTP-binding proten HflX [Caldicellulosiruptor obsidiansis OB47] gi|302574262|gb|ADL42053.1| GTP-binding proten HflX [Caldicellulosiruptor obsidiansis OB47] Length = 509 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 19/167 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+++G TNAGKSTL+NR A V +V K+ T V K + + DT G Sbjct: 352 VVSIIGYTNAGKSTLMNRISKADV-LVEDKLFATLDTTTRRVYHKGREFLLTDTVGFI-- 408 Query: 84 KDSYHKLMIRLSWS--TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 ++ H L+ S + +K+++++ VVD + +KV+ DLLK++ + LI + Sbjct: 409 RNLPHHLVEAFSSTLEEVKYSNLILNVVDISDPYYYDHIKVS-EDLLKQLGAENIPLIRV 467 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 NKID V + ++ + + ++ VSA G G D +L+ + Sbjct: 468 YNKIDKVD----ISSVDVFDNVPYV----FVSAQDGRGIDTLLDMIV 506 >gi|260584383|ref|ZP_05852130.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633] gi|260157901|gb|EEW92970.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633] Length = 476 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 5/129 (3%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A+VG N GKS+L+N + + +IVT TTR + V+ + + +DT G Sbjct: 236 RDGLKTAIVGRPNVGKSSLLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAG 295 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ + S +K AD V L+++ L+ LL E K R+IL NK Sbjct: 296 IRETDDIVEKIGVERSRKALKEADFVLLLLNQSETLQEEDIRLL-ETTKGMKRIIL-FNK 353 Query: 140 IDCVKPERL 148 D P +L Sbjct: 354 TDL--PSKL 360 >gi|151946184|gb|EDN64415.1| mitochondrial splicing system relatd protein [Saccharomyces cerevisiae YJM789] Length = 526 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 + L+GA N GKS+LVN +SIV+ TTR + +++ +++ DT GI + Sbjct: 277 LVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKS 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 D L I + +D+ +VD K+ D+L ++ ++ R+I+++NK Sbjct: 337 SDKIEMLGIERAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIVVNKS 396 Query: 141 DCVKPERLLEQAEIANKL 158 D V + E ++ NKL Sbjct: 397 DLVSDD---EMTKVLNKL 411 >gi|122702139|emb|CAL88260.1| GTPase [Helicobacter pylori] gi|317452841|emb|CBL87856.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|119471071|ref|ZP_01613630.1| GTP-binding protein EngA [Alteromonadales bacterium TW-7] gi|119445911|gb|EAW27192.1| GTP-binding protein EngA [Alteromonadales bacterium TW-7] Length = 488 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + IV TTR + ++ E + V +DT G+ K Sbjct: 204 LAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNEKEYVLIDTAGVRKRK 263 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ ++V LVVD+ + LL L++ +NK D Sbjct: 264 KVSDVVEKFSVIKTLQAIEDCNVVLLVVDARDGISDQDLSLLGFALNSGRSLVIAVNKWD 323 Query: 142 CVKP---ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + +R+ + E+ +L FI+ + +SA G G Sbjct: 324 GLDDYVKDRI--KTELDRRLGFIDFARLHFISALHGTGV 360 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYEFIVVDTGGIDGT 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ + V + + K+ + ++ NK D + Sbjct: 64 EEGIEIEMADQSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQDKKCFVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 >gi|18075553|emb|CAD11172.1| GTP-binding protein [Helicobacter pylori] gi|122700621|emb|CAL87899.1| GTPase [Helicobacter pylori] gi|122702467|emb|CAL88424.1| GTPase [Helicobacter pylori] gi|122702741|emb|CAL88560.1| GTPase [Helicobacter pylori] gi|122702823|emb|CAL88601.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|330685267|gb|EGG96928.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU121] Length = 459 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L + L + ++ +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSQADLILFVLNNNEALTEDDQTLYDVV--KNEDVIVIINK 336 Query: 140 IDC 142 D Sbjct: 337 TDL 339 >gi|15836693|ref|NP_297381.1| GTP-binding protein [Xylella fastidiosa 9a5c] gi|9104866|gb|AAF82901.1|AE003863_3 GTP-binding protein [Xylella fastidiosa 9a5c] Length = 450 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 9/158 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TN+GKSTL N GA T VR IV S + DT G + Sbjct: 201 IALVGYTNSGKSTLFNALTGASAYTADQLFATLDPKVRRIVLPGSSAM-LADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSH---RELKVN-IHDLLKEIAKRSSRLILILN 138 H+L+ R + S + AD++ V+D+ RE +++ + ++L+ I +L+ N Sbjct: 258 HLPHELVAAFRSTLSEAREADLLLHVIDAADPLREERIDQVDEVLQAIGAGELPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 KIDC++ + + + + +SA GHG + Sbjct: 318 KIDCIEGAEVRQDTQDGIPDQARRERVWLSARHGHGVE 355 >gi|86150688|ref|ZP_01068909.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596778|ref|ZP_01100015.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 84-25] gi|218562575|ref|YP_002344354.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14195292|sp|Q9PNX9|MNME_CAMJE RecName: Full=tRNA modification GTPase mnmE gi|85838869|gb|EAQ56137.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191619|gb|EAQ95591.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 84-25] gi|112360281|emb|CAL35076.1| putative tRNA modification GTPase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926189|gb|ADC28541.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni IA3902] gi|315927915|gb|EFV07238.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928514|gb|EFV07818.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 305] Length = 442 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ + LS +++ ADI+ V D+ R + +A ++ ILNK D Sbjct: 277 DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 >gi|331703406|ref|YP_004400093.1| GTP binding protein EngA [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801961|emb|CBW54115.1| GTP binding protein EngA, probably truncated inC terminal [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 435 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 6/164 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+L NR + K SIV K TR + + + +DT GI + Sbjct: 5 VVAIVGKPNVGKSSLFNRIIKEKKSIVDDKPGVTRDRIYSSAEWLTREFILIDTGGI-SL 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D I+L I+ AD++ VVD L + + K + K +IL +NK D Sbjct: 64 SDQLFSNEIKLQTQIAIEQADVIIFVVDFLNNLDNDDKMIAKILHKSKKPVILAVNKYD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ ++ + + +S+T G G D+L+ + S + Sbjct: 123 ---KKTIDDHNYQFMSLGFSDLYFISSTHGIGIGDLLDKVISYI 163 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 I++ +++++ ++D+S +A++G N GKS+LVN V IV+ TT V Sbjct: 160 ISYISKNEEIIKDDSTK--IAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISF 217 Query: 66 SEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 S + + +DT GI + K S S I ADIV L++D+ + + ++ Sbjct: 218 SYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISDADIVLLMIDATKPITDQDTNI 277 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 I +I+++NK D +K Sbjct: 278 GGLIYDEKKPVIIVVNKWDLIK 299 >gi|311087969|gb|ADP68048.1| GTP-binding protein EngA [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 441 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 14/171 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 + L+G TN GKSTL N + ++V + TR G + +I+ +DT G+ Sbjct: 5 IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + IK A ++ +V++ L +++ K I K + IL++NKID + Sbjct: 65 LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124 Query: 144 KPERLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 +A N+ + EK +SA+ G + ++N L PW+ Sbjct: 125 ------NEASKINEFYSLGFEKIQKISASHNQGINTLINRY-----LIPWI 164 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 16/161 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G N GKSTL+N + + I ++ TT + + +DT G K Sbjct: 189 VAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYTLIDTAGASKKK 248 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 + + + I + TI+ ++++ L++D+ H++L L I ++++ Sbjct: 249 KKINDFQRFSIIKTLQTIEKSNVILLIIDASLQTCHQDL-----SLADFIIHSGKGIVVV 303 Query: 137 LNKID---CVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +NK D V+ +++ E + K ++ K +SA G Sbjct: 304 VNKCDLFNSVELKKIKELIKSKLKFLYFSKIHFISALYKKG 344 >gi|307637526|gb|ADN79976.1| GTP-binding protein [Helicobacter pylori 908] gi|325996115|gb|ADZ51520.1| GTP-binding protein [Helicobacter pylori 2018] gi|325997711|gb|ADZ49919.1| GTP-binding protein [Helicobacter pylori 2017] Length = 462 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 122 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + E+A A K+F +S + G +++ + + L L Sbjct: 123 NKIDNDKEK---ERA-YAFSSFGAPKSFNISVSHNRGISALIDAVLNALNL 169 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHRG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALDRTKKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|296454449|ref|YP_003661592.1| small GTP-binding protein [Bifidobacterium longum subsp. longum JDM301] gi|296183880|gb|ADH00762.1| small GTP-binding protein [Bifidobacterium longum subsp. longum JDM301] Length = 501 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L NR G+ + T + VR + ++DT G Sbjct: 282 TVAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRR 341 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE--LKVN-IHDLLKEIAKRSS-RLILILN 138 + + + + AD++ VVD SH + +V+ ++D+L +I +S IL+ N Sbjct: 342 LPTQLIEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFN 401 Query: 139 KIDCVKPERLLEQAEIANK---LVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K D QA+ A + F+VSA G G D++ + S LP+ Sbjct: 402 KAD---------QADEATRERLAALQPDAFIVSAYTGEGLDELRTAVESLLPV 445 >gi|122701455|emb|CAL88117.1| GTPase [Helicobacter pylori] gi|122702121|emb|CAL88251.1| GTPase [Helicobacter pylori] gi|292806598|gb|ADE42429.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122701547|emb|CAL88163.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALNL 168 >gi|17229610|ref|NP_486158.1| iron(II) transporter [Nostoc sp. PCC 7120] gi|17131209|dbj|BAB73817.1| iron(II) transporter [Nostoc sp. PCC 7120] Length = 206 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F + F QD S + +ALVG N GKS L N G V+ V++ TT + RG+ Sbjct: 23 FPKNQQPFTQDVSHNPQIALVGMPNVGKSVLFNTLTGIYVT-VSNYPGTTVEVSRGLAQI 81 Query: 68 KESQIVFLDTPGIFN 82 E I +DTPG+++ Sbjct: 82 GEQSITVIDTPGMYS 96 >gi|317453529|emb|CBL87874.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGRPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLNL 168 >gi|302842518|ref|XP_002952802.1| hypothetical protein VOLCADRAFT_82002 [Volvox carteri f. nagariensis] gi|300261842|gb|EFJ46052.1| hypothetical protein VOLCADRAFT_82002 [Volvox carteri f. nagariensis] Length = 596 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N + + +IVT TTR ++ +S + LDT GI + Sbjct: 359 VAIVGRPNVGKSSLLNAWTNSDRAIVTEVAGTTRDVLEATLSIGGVPVTLLDTAGIRQSN 418 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 D ++ + S + ADIV +VVD D+ K + Sbjct: 419 DVVERIGVERSQAAAAAADIVIMVVDGAAGWTDADSDIFKAL 460 >gi|298484604|ref|ZP_07002709.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160861|gb|EFI01877.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 456 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ +++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|291523016|emb|CBK81309.1| iron-only hydrogenase maturation protein HydF [Coprococcus catus GD/7] Length = 401 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + G NAGKS+LVN G ++++V+ + TT + + + +V +DTPG F+ Sbjct: 14 IGFFGRRNAGKSSLVNAVTGQELAVVSDTRGTTTDPVSKAMELLPIGPVVIIDTPG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + +L +R + + +D+ LV D LK +L++ ++ +L+ NK D + Sbjct: 73 EGALGELRVRKTRQILNKSDVAVLVADCTEGLKDCDRELIEIFRQKEIPWLLVWNKCD-L 131 Query: 144 KPE 146 KPE Sbjct: 132 KPE 134 >gi|122700599|emb|CAL87888.1| GTPase [Helicobacter pylori] gi|122700735|emb|CAL87956.1| GTPase [Helicobacter pylori] gi|122700809|emb|CAL87993.1| GTPase [Helicobacter pylori] gi|122700813|emb|CAL87995.1| GTPase [Helicobacter pylori] gi|122700819|emb|CAL87998.1| GTPase [Helicobacter pylori] gi|122701463|emb|CAL88121.1| GTPase [Helicobacter pylori] gi|122701483|emb|CAL88131.1| GTPase [Helicobacter pylori] gi|122701707|emb|CAL88243.1| GTPase [Helicobacter pylori] gi|122702183|emb|CAL88282.1| GTPase [Helicobacter pylori] gi|122702481|emb|CAL88431.1| GTPase [Helicobacter pylori] gi|122702509|emb|CAL88445.1| GTPase [Helicobacter pylori] gi|122702827|emb|CAL88603.1| GTPase [Helicobacter pylori] gi|195954209|gb|ACG58810.1| YphC [Helicobacter pylori] gi|195954211|gb|ACG58811.1| YphC [Helicobacter pylori] gi|292806464|gb|ADE42362.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806558|gb|ADE42409.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806568|gb|ADE42414.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806666|gb|ADE42463.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806686|gb|ADE42473.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|331017732|gb|EGH97788.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 456 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ +++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|323698496|ref|ZP_08110408.1| GTP-binding proten HflX [Desulfovibrio sp. ND132] gi|323458428|gb|EGB14293.1| GTP-binding proten HflX [Desulfovibrio desulfuricans ND132] Length = 557 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 10/168 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL+N ++V T R I +E ++V DT G Sbjct: 390 VVSLVGYTNAGKSTLLNTLTSSRVLAEDKLFATLDPTSRRIRFPEEREVVLTDTVGFIRR 449 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVN---IHDLLKEIAKRSSRLILILNK 139 K R + + AD++ LV D SH E++ + +L E+ S IL+LNK Sbjct: 450 LPPDLKEAFRATLEELDSADLLVLVCDASHPEVEEQVEAVRAILDEMELSSIPSILVLNK 509 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D +L E+ A + V+ E V+ + + V+ + + LP Sbjct: 510 WD-----KLDEEGRAAMRNVYPEGIPAVAVDR-PTLEPVVQAILANLP 551 >gi|317452837|emb|CBL87854.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--V 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|300871553|ref|YP_003786426.1| GTP-binding protein EngA [Brachyspira pilosicoli 95/1000] gi|300689254|gb|ADK31925.1| GTP-binding protein, EngA [Brachyspira pilosicoli 95/1000] Length = 489 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 11/158 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 +A++G N GKSTL NRF G + SIV TR I I I F DT G+ + Sbjct: 4 IAILGRPNVGKSTLFNRFAGRRKSIVDPTAGVTRDI--SIAKTYIDDIAFNVFDTGGLLD 61 Query: 83 AKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K+ + + A ++ VVD+H+ + H + I K + +IL++NKI Sbjct: 62 MSEDVLNEKVREKALKTATDEAHLLLFVVDAHQTHPDDRH-FINTIRKLNKPIILVINKI 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D L+ + + I+ +SA +G DD+ Sbjct: 121 DSDSHNNLINEF----YSLGIKDIVAISAEHNNGIDDL 154 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +A+VG NAGKSTL+N +G SIV++ TTR + + K I +DT GI Sbjct: 228 IAIVGKPNAGKSTLLNTLIGKDRSIVSNIAGTTRDSIDETFNFKGDDICLVDTAGIRKKK 287 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N + + I+ +D+ L++D L + I +R +I+ NK D Sbjct: 288 NVNTDVEYYSVNRAIKAIEASDVCILMLDVFEGLTDQDKTIANLIIERRKGIIIAANKWD 347 >gi|302811273|ref|XP_002987326.1| hypothetical protein SELMODRAFT_158629 [Selaginella moellendorffii] gi|300144961|gb|EFJ11641.1| hypothetical protein SELMODRAFT_158629 [Selaginella moellendorffii] Length = 432 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 30/198 (15%) Query: 9 FNEHKDFVQD--------------NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKV 54 F+EH +++D N R + LVGA N GKS+LV K + + Sbjct: 215 FHEHVQYLEDLKETAKTLRKLPVVNPRDPILCLVGAPNVGKSSLVRVLSTGKPEVCNYPF 274 Query: 55 QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE 114 TTR+I G + + DTPG+ N D+ M +L+ + + + L V Sbjct: 275 -TTRAISMGHIMDYAFSYQVTDTPGLLNRIDADRNDMEKLTLAALAYLPTAVLYV----- 328 Query: 115 LKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 HDL E I +I P R ++ +K +E + + G Sbjct: 329 -----HDLTGECGTSVQDQFYIYKEIRGRFPSR--PWIDVVSKADLLE---VPALRDGEE 378 Query: 175 CDDVLNYLCSTLPLAPWV 192 D+++ Y S P A WV Sbjct: 379 VDEIVRYKTSGPPGALWV 396 >gi|242255940|gb|ACS88954.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDVLLSKKIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNVLNL 168 >gi|331092167|ref|ZP_08340997.1| GTP-binding protein HflX [Lachnospiraceae bacterium 2_1_46FAA] gi|330401939|gb|EGG81513.1| GTP-binding protein HflX [Lachnospiraceae bacterium 2_1_46FAA] Length = 415 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 21/202 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKSTL+N+ GA V T RG+ + + +I+ DT G F Sbjct: 203 VVAIVGYTNAGKSTLLNKLTGASVLEEDKLFATLDPTTRGLKLQSKQEILLTDTVG-FIR 261 Query: 84 KDSYHKLMIRLSWSTI---KHADIVCLVVD-SHRELKVNIH---DLLKEIAKRSSRLILI 136 K +H +I ST+ K+ADI+ VVD S+ +L +H + L+++ + +I Sbjct: 262 KLPHH--LIEAFKSTLEEAKYADIILHVVDASNPQLDEQMHIVYETLQQLEVVNKPIITA 319 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP----LAPWV 192 NK D E ++ K +I K +SA G G +L + L L + Sbjct: 320 FNKQDKADGEMIIRDF----KADYIVK---ISAKTGEGLSGLLETIEEVLRQQKVLVERI 372 Query: 193 YSADQISDLPMFHFTAEITREK 214 YS + + + E+ E+ Sbjct: 373 YSYAEAGKIQLIRKYGELLTEE 394 >gi|329764901|ref|ZP_08256491.1| small GTP-binding protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138613|gb|EGG42859.1| small GTP-binding protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 369 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 11/122 (9%) Query: 18 DNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 D RSG V +G + GKSTL+N+ AK ++ ++ TT ++V G++ + ++I L Sbjct: 57 DVRRSGDATVVFIGLPSVGKSTLLNKLTDAKSAVGAYQF-TTLTVVPGMMDYRGAKIQVL 115 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSS 131 D PGI S L R+ S + AD+V LV+D H ++ VN L I R + Sbjct: 116 DLPGIIKGASSGKGLGKRI-LSVARSADLVLLVLDVFQPFHEDVLVN---ELGNIGIRLN 171 Query: 132 RL 133 RL Sbjct: 172 RL 173 >gi|224824285|ref|ZP_03697393.1| GTP-binding proten HflX [Lutiella nitroferrum 2002] gi|224603704|gb|EEG09879.1| GTP-binding proten HflX [Lutiella nitroferrum 2002] Length = 462 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 40/232 (17%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G V+LVG TNAGKSTL+ G++V + T + VR + E +++ DT G Sbjct: 226 GGVSLVGYTNAGKSTLMRALTGSEVLVANKLFATLDTTVRALYPESVPRVLVSDTVGFI- 284 Query: 83 AKDSYHKLMIRLSWSTIKHA-DIVCL--VVDS-----HRELKVNIHDLLKEIAKRSSRLI 134 K+ H L+ ST++ A D L V+D+ R+L+V ++L+EI I Sbjct: 285 -KNLPHGLVASFK-STLEEALDAALLLHVIDASDPGFQRQLEVT-DEVLQEIGADDVPRI 341 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 + NKID V E AE A +++ + C + + L +T+ Sbjct: 342 RVFNKIDHVGDE-----AEQAAWTAELQERYPGCVVMSARCPEDVASLHATI-------- 388 Query: 195 ADQISDLPMFHFTAEITREKLFL-----HLHKEIPYSSCVVTEKWEEKKDGS 241 + F ++ E+L L L EI YS C V E+ E +DGS Sbjct: 389 --------VSFFQQDLVEEELLLPWSAQQLRGEI-YSHCQVLEERAE-EDGS 430 >gi|122700773|emb|CAL87975.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILRALNL 168 >gi|85057761|ref|YP_456677.1| GTP-binding protein EngA [Aster yellows witches'-broom phytoplasma AYWB] gi|84789866|gb|ABC65598.1| GTP-binding protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 479 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 9/236 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L NR +G + +I K TR + +DT GI Sbjct: 5 IAIVGRPNVGKSSLFNRIIGKRHAITHQKKGITRDRIYATAHWLTKTFGVIDTGGIEIKS 64 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + + AD++ VVD L N L K + K +IL +NKID Sbjct: 65 TPFLEQIKIQAQLAVDEADVIVFVVDGQIGLTQNDSYLAKLLYKTKKPVILAVNKIDN-- 122 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 LL L F + F +S G G D+L+ + L A + + LP Sbjct: 123 -HNLLFNTYEFYALGF-DTPFAISTQHGVGIGDLLDKIVFLLRDASLTSDSSFLEALP-- 178 Query: 205 HFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIML 260 T + + LF + EIP + E+ + ++ I + V RP+ K L Sbjct: 179 --TDKSLQSSLF-ESNYEIPEKQLLEPEQKQNQEKEENKIIKFCVVGRPNVGKSTL 231 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG---- 79 CV VG N GKSTL N + ++ IV+ TT V + +DT G Sbjct: 219 CV--VGRPNVGKSTLTNSLLASQRMIVSDMAGTTTDAVDTFFENDGQKYQIIDTAGIKKR 276 Query: 80 --IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 I+ +D Y L + ++ ADI CLV+D+ + ++ I + I+I+ Sbjct: 277 GKIYEQEDKYSFLR---ALGALEKADIACLVLDAKEGILEQDKNIAGFILENYKACIIIV 333 Query: 138 NKIDCVKPE 146 NK D ++ + Sbjct: 334 NKWDLLEKD 342 >gi|77362053|ref|YP_341627.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis TAC125] gi|123744148|sp|Q3ICZ9|DER_PSEHT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|76876964|emb|CAI89181.1| GTP-binding protein, essential for cell growth in E. coli and B. subtilis, regulates ribosome synthesis [Pseudoalteromonas haloplanktis TAC125] Length = 487 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 57/123 (46%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI + Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYEFIVVDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I+ ADIV +VD+ + V + + K+ + ++ NK D + Sbjct: 64 EEGIEIEMADQSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQEKKCFVVANKTDGI 123 Query: 144 KPE 146 + Sbjct: 124 DAD 126 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G + IV TTR + ++ + + + +DT G+ K Sbjct: 203 LAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNDKEYILIDTAGVRKRK 262 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ ++V LVVD+ + LL L++ +NK D Sbjct: 263 KVSDVVEKFSVIKTLQAIEDCNVVLLVVDARAGISDQDLSLLGFALNSGRSLVIAVNKWD 322 Query: 142 CVKP---ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + +R+ ++E+ +L FI+ + +SA G G Sbjct: 323 GLDDYVKDRI--KSELDRRLGFIDFARLHFISALHGTGV 359 >gi|329766866|ref|ZP_08258394.1| GTP-binding protein engA [Gemella haemolysans M341] gi|328837591|gb|EGF87216.1| GTP-binding protein engA [Gemella haemolysans M341] Length = 435 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKST+ N+ +G ++SIV TR + +DT GI Sbjct: 5 TVAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + + I AD++ + + + + ++ K + K ++L +NKID Sbjct: 65 DTPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVAKLLYKTDKPVVLAVNKIDNF 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ L F + F +S + G G D+L+ +C Sbjct: 125 DMNHMIYDFY---SLGFGD-PFPISGSHGLGIGDLLDEVCKNF 163 Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+L+N +G + I + TTR + + V +DT GI Sbjct: 178 SLIGRPNVGKSSLINTILGEERVIASDIAGTTRDAIDTDFKHNGDEYVVIDTAGIRKRGK 237 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + S I+ +D+V +V+++ + + + +I+++NK D Sbjct: 238 VYESCEKYSVLRSLKAIERSDVVLVVLNAEEGIIEQDKKVAGYAHESGKGVIIVVNKWDA 297 Query: 143 V-KPERLLEQAE 153 + K ++ +++ E Sbjct: 298 IEKDDKTMKEFE 309 >gi|314935198|ref|ZP_07842551.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp. hominis C80] gi|313656533|gb|EFS20272.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp. hominis C80] Length = 459 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L L + I + I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTEEDRTLYEVIKNEDA--IVIVNK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D ER L+ E+ ++ S K G D++ Sbjct: 337 TDL---ERRLDIEEVKT-MIGDTPLIQTSMLKQEGVDEL 371 >gi|304436527|ref|ZP_07396500.1| ribosome-associated GTPase EngA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370470|gb|EFM24122.1| ribosome-associated GTPase EngA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 442 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 5/168 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N+ +VSIV TR + + +DT GI F+ Sbjct: 5 IVAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLNHEFTIIDTGGIEFD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + M + ++ AD++ +VD L + ++ + + + +IL +NKID Sbjct: 65 ESDHILRSMRSQAELAMEEADVILFLVDGRAGLTTSDEEVARLLRRTKKPVILAVNKIDS 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E L+ + + +SA+ D+L+ + + P P Sbjct: 125 FEREALIYDF----YSLGLGDPIPISASNAMNLGDLLDAVVAAFPEEP 168 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 4/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+LVNR +G + IV+ TTR + ++ ++ + +DT G+ Sbjct: 178 AIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTKDGAKYLLIDTAGMRRK 237 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + S I A +V +V+++ + + + + +I+++NK Sbjct: 238 GKITLPVERYSVMRSLRAIDRAGVVLMVINAAEGILEQDTKIAGYVHESGKGVIIVVNKW 297 Query: 141 DCVKPER 147 D PE+ Sbjct: 298 DIF-PEK 303 >gi|289628219|ref|ZP_06461173.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649109|ref|ZP_06480452.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi str. 2250] gi|330870070|gb|EGH04779.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 456 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ +++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|122702455|emb|CAL88418.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|158313083|ref|YP_001505591.1| small GTP-binding protein [Frankia sp. EAN1pec] gi|158108488|gb|ABW10685.1| small GTP-binding protein [Frankia sp. EAN1pec] Length = 503 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 18/172 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR DT G Sbjct: 286 AVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTVRRATLPDGRIFTLADTVGFV-- 343 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILIL 137 + H+++ R + + AD+V VVD + + ++L EI ++++ Sbjct: 344 RHLPHQIVEAFRSTLEEVVDADLVLHVVDGSAPDPMGQISAVREVLAEIDAAGVPELIVV 403 Query: 138 NKIDCVKPERL--LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D V P L L QA + VSA G G +++ L + +P Sbjct: 404 NKVDAVDPTTLAVLRQA--------VPDAIFVSARSGAGLQELVEALSARIP 447 >gi|122702261|emb|CAL88321.1| GTPase [Helicobacter pylori] gi|122702271|emb|CAL88326.1| GTPase [Helicobacter pylori] gi|122702339|emb|CAL88360.1| GTPase [Helicobacter pylori] gi|122702375|emb|CAL88378.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----TPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702343|emb|CAL88362.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISALIHAILRALNL 168 >gi|122700785|emb|CAL87981.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLNL 168 >gi|122700709|emb|CAL87943.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ ++ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|301344405|gb|ADK73963.1| HydF [Shewanella oneidensis] Length = 413 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N+GKS+L+N G ++SIV+ K TT ++ + + + F DT GI + Sbjct: 24 IALVGRRNSGKSSLLNMLAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGI-DD 82 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + +D+ LVVD ++ L+ EI + ++++ NK D Sbjct: 83 EGTLGAMRVSATRRVLFRSDMALLVVDEQGLCPSDMA-LIDEIRQLQMPILMVFNKADIC 141 Query: 144 KPE 146 P+ Sbjct: 142 TPK 144 >gi|254458756|ref|ZP_05072180.1| GTPase family protein [Campylobacterales bacterium GD 1] gi|207084522|gb|EDZ61810.1| GTPase family protein [Campylobacterales bacterium GD 1] Length = 496 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 7/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR V + +I + TTR + R ++ LDT G+ Sbjct: 4 IAIIGRPNVGKSSLFNRLVKKRDAITSDIAGTTRDVKRRNTVIINKEVELLDTGGLDKGC 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + K+ +S ADI+ +VD + L E+ + L++NKID K Sbjct: 64 ELFDKIK-EMSLKAAYKADIILYMVDGKSIPEDEDKKLFYELQNLGKEVALVVNKIDNDK 122 Query: 145 -PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L + E + F +S ++L+++ S +P Sbjct: 123 MKENLWDYYEFGTDAI-----FGISVAHNRNTVELLDWIASKIP 161 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 10/140 (7%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 K+F +++ +A++G TN GKS+L+N +G + S+V+ TT + + K Q+ Sbjct: 227 KEFNEEDVNHIKIAIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDETIDYKGKQL 286 Query: 73 VFLDTPGIFNAKD--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-- 128 F+DT G+ K + + + ++++ +V+D+ DL ++IA Sbjct: 287 TFVDTAGLRRRGKILGIEKYALMRTTEMLDNSNMALIVLDASEPF----LDLDEKIAGLV 342 Query: 129 RSSRL--ILILNKIDCVKPE 146 S+RL I++LNK D K E Sbjct: 343 DSNRLASIIVLNKWDISKRE 362 >gi|122700739|emb|CAL87958.1| GTPase [Helicobacter pylori] gi|122702841|emb|CAL88610.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|51473858|ref|YP_067615.1| GTP-binding protein EngA [Rickettsia typhi str. Wilmington] gi|81692277|sp|Q68W59|DER_RICTY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51460170|gb|AAU04133.1| probable GTP-binding protein EngA [Rickettsia typhi str. Wilmington] Length = 447 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 10/166 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 + LVG N GKSTL NR K +IV TR R K FL DTPG+ Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRD--RKYTDGKIGSFKFLLIDTPGLEE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ K ++ + I AD++CL+VD + + L + K + IL++NK C Sbjct: 64 NPDNMGKRLMEQTTQAILEADLICLMVDGRSGVLPDDKLLSSFVRKYNKHCILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 E+ + + KL F + ++SA G G D+ + + + L + Sbjct: 122 ---EKAFDFDKEYYKLGF-DSIVIISAEHGTGLIDLYDEIIAKLSI 163 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 6/144 (4%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D R C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 171 IADPFRGDCLQIVVSGRPNAGKSTFINAIINDERLLTGPEAGITRESIEIDWQYKNTHIK 230 Query: 74 FLDTPGIFNAKD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ S KL + + IK A+ V L++D+ LK ++ I Sbjct: 231 LIDTAGLRKKSTITASLEKLSTSDTINAIKFANTVILMIDALAHLKQQDLNIANHIINEG 290 Query: 131 SRLILILNKIDCV-KPERLLEQAE 153 +I+++NK D V + E+ QAE Sbjct: 291 RSIIIVVNKWDLVEESEKEAFQAE 314 >gi|23099252|ref|NP_692718.1| GTP-binding protein EngA [Oceanobacillus iheyensis HTE831] gi|37999696|sp|Q8EQA8|DER_OCEIH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|22777481|dbj|BAC13753.1| GTP binding protein [Oceanobacillus iheyensis HTE831] Length = 436 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 6/168 (3%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R VA+VG N GKST+ NR VG ++SIV TR + +DT GI Sbjct: 2 RKSVVAIVGRPNVGKSTIFNRLVGERISIVEDIPGVTRDRIYANAEWLNHTFNIIDTGGI 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + M + + I AD++ +++ + ++ K + K + +++ +NK+ Sbjct: 62 ELGDEPLLVQMRQQAEIAIDEADVIVFLLNGKEGITSADDEVAKLLFKSNKPVVVGVNKM 121 Query: 141 DCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + E + E + + F +S T G G D+L+ + P Sbjct: 122 DNPQMHETIYEYYSLG-----FGQPFPISGTHGLGLGDLLDEVVGHFP 164 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 +L+G N GKS+LVN + IV+ TTR + + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLNEDRVIVSEIEGTTRDAIDTKLHRDDQDFVIIDTAGMRKRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K + + I+ +D+V +++D+ ++ + +++++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVLIDAETGIREQDKRIAGYAHDAGRAIVIVVNKWDT 298 Query: 143 V 143 V Sbjct: 299 V 299 >gi|121612630|ref|YP_001000638.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81-176] gi|167005565|ref|ZP_02271323.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81-176] gi|166200472|sp|A1VZU7|MNME_CAMJJ RecName: Full=tRNA modification GTPase mnmE gi|87248887|gb|EAQ71850.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81-176] Length = 442 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IV+ TTR + + +DT GI +K Sbjct: 217 IAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESK 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D ++ + LS +++ ADI+ V D+ R + +A ++ ILNK D Sbjct: 277 DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 >gi|329770413|ref|ZP_08261795.1| GTP-binding protein engA [Gemella sanguinis M325] gi|328836536|gb|EGF86196.1| GTP-binding protein engA [Gemella sanguinis M325] Length = 435 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKST+ N+ +G ++SIV TR + +DT GI Sbjct: 5 TVAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + + I AD++ + + + + ++ K + K ++L +NKID Sbjct: 65 DTPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVAKLLYKTDKPVVLAVNKIDNF 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ L F + F +S + G G D+L+ +C Sbjct: 125 DMNHMIYDFY---SLGFGD-PFPISGSHGLGIGDLLDEVCKNF 163 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+L+N +G + I + TTR + + V +DT GI Sbjct: 178 SLIGRPNVGKSSLINTILGKERVIASEIAGTTRDAIDTDFKYNGDEYVVIDTAGIRKRGK 237 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + S I+ +D+V +V+++ + + + +I+++NK D Sbjct: 238 VYENCEKYSVLRSLKAIERSDVVLVVLNAEEGIIEQDKKVAGYAHESGKGVIIVVNKWDA 297 Query: 143 V 143 + Sbjct: 298 I 298 >gi|78484970|ref|YP_390895.1| small GTP-binding protein domain-containing protein [Thiomicrospira crunogena XCL-2] gi|78363256|gb|ABB41221.1| GTP-binding protein [Thiomicrospira crunogena XCL-2] Length = 480 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI-VFLDTPGIF-- 81 VA++G N GKSTL+NR +G + + TTR + + E++ ++ +DT G+ Sbjct: 183 VAVIGRPNVGKSTLINRMIGEERVVAFDMPGTTRDSIY-VPFERQGELYTLIDTAGVRRR 241 Query: 82 -NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 N K+ K I + ++ +++V LVVD + LL + L++ +NK Sbjct: 242 KNIKEKIEKFSIVKAIEAMESSNVVVLVVDGSEGITDQDLTLLGLALESGRGLVIAINKW 301 Query: 141 D-CVKPERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 D +R + E+ KL F++ K ++SA G G D+ Sbjct: 302 DNLTSDQRAKIKHELEYKLHFVDYAKRHLISALHGTGVGDLF 343 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 8/163 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV TR G + + +DT G+ Sbjct: 5 VIALVGRPNVGKSTLFNRLTRSRDAIVADYPGLTRDRQYGTGRVGSTPYIVVDTGGLSGE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ LM S I AD V +VD L + I + + L++NK + Sbjct: 65 QEGVDPLMAGQVQSAIGEADAVLFLVDGRAGLIPADESIASYIRHFNKPVYLLVNKAEGH 124 Query: 144 KPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCS 184 K + IAN + + + F++S+ G ++++ + S Sbjct: 125 KKD------VIANDFYQMGLGEPFVISSAHGDNVNEMIESVLS 161 >gi|317009155|gb|ADU79735.1| GTP-binding protein EngA [Helicobacter pylori India7] Length = 462 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + E+A A + K+F +S + G +++ + + L L Sbjct: 128 DKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 169 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|294648709|ref|ZP_06726169.1| tRNA modification GTPase TrmE family protein [Acinetobacter haemolyticus ATCC 19194] gi|292825384|gb|EFF84127.1| tRNA modification GTPase TrmE family protein [Acinetobacter haemolyticus ATCC 19194] Length = 454 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 27/189 (14%) Query: 16 VQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 VQ ++R G V + G NAGKS+L+N G + +IVT TTR ++ +S Sbjct: 206 VQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGHERAIVTDIAGTTRDVLHEKISLN 265 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 I DT G+ D + IR + I+ AD++ LV D +N D ++A Sbjct: 266 GLPITLTDTAGLRETGDVVEREGIRRAIKEIEQADLLLLVYD------LNQGDEPLQLAH 319 Query: 129 -------RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNY 181 RL+LI NK D + AE+ + F + VSA + G +++ Sbjct: 320 EYFADHLEPKRLLLIGNKCDLTG-----QPAEMTDYQGF--RHIRVSAKQDMGVQALIDA 372 Query: 182 LCSTLPLAP 190 + + P Sbjct: 373 ITAHAGFQP 381 >gi|227364908|ref|ZP_03848953.1| GTP-binding protein EngA [Lactobacillus reuteri MM2-3] gi|325682467|ref|ZP_08161984.1| ribosome-associated GTPase EngA [Lactobacillus reuteri MM4-1A] gi|227070055|gb|EEI08433.1| GTP-binding protein EngA [Lactobacillus reuteri MM2-3] gi|324978306|gb|EGC15256.1| ribosome-associated GTPase EngA [Lactobacillus reuteri MM4-1A] Length = 440 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 8 IVAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEIS 67 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + + I AD++ V D ++ + D +++A+ RS++ ++L +NK Sbjct: 68 DQPLLTQIRQQAEIAIDEADVIIFVAD----VENGVTDADEQVARILYRSNKPVVLAVNK 123 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D PER +++I + + + + VS+ G G D+L+ + P Sbjct: 124 VD--NPER---RSDIYDYYSLGLGEPYAVSSVHGIGMGDLLDAVIKEFP 167 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 12/127 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 + +G N GKS+LVN +G IV++ TTR + + Q +DT GI Sbjct: 181 SFIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTQFETADGQKFTMVDTAGIRKKG 240 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILIL 137 Y + + S I +D+V +V+++ I +L K IA + +I+++ Sbjct: 241 KIYENTERYSLMRSMRAIDDSDVVLVVLNAEE----GIRELDKHIAGYAHEAGCGVIIVV 296 Query: 138 NKIDCVK 144 NK D +K Sbjct: 297 NKWDTLK 303 >gi|122700823|emb|CAL88000.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|86358709|ref|YP_470601.1| GTP-binding protein EngA [Rhizobium etli CFN 42] gi|123511179|sp|Q2K5L2|DER_RHIEC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86282811|gb|ABC91874.1| GTP-binding protein [Rhizobium etli CFN 42] Length = 473 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V TR G +DT G+ A Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEEA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++S M + + I AD+ VVD+ L L + + +R ++L+ NK Sbjct: 64 DEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 22/191 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E ++ D ++ VA+VG NAGKSTL+NRF+G + + TR + + Sbjct: 190 GEDEEPAYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 249 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I DT G+ + KL + + I+ A+ V +V D+ + ++ + Sbjct: 250 RTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLV 309 Query: 127 AKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + +L NK D + K +RLL QA + +S G G Sbjct: 310 LREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGI-------RAVPISGQTGWG 362 Query: 175 CDDVLNYLCST 185 D ++ + T Sbjct: 363 LDKLMQSIIDT 373 >gi|297538116|ref|YP_003673885.1| ribosome-associated GTPase EngA [Methylotenera sp. 301] gi|297257463|gb|ADI29308.1| ribosome-associated GTPase EngA [Methylotenera sp. 301] Length = 484 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 4/156 (2%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E + Q R VA+VG N GKSTLVN +G + I + TTR + + + Sbjct: 168 EEPELDQTGDRIPKVAIVGRPNVGKSTLVNALLGEERVIAFDEPGTTRDSISIDLEKNGK 227 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 +DT G+ ++ K + + +I+ A++V LVVD+ + + I Sbjct: 228 HYTLIDTAGVRKRGRVLEAIEKFSVIKTIQSIEEANVVILVVDAQEGITEQDAHVAAYIL 287 Query: 128 KRSSRLILILNKIDCVK-PERLLEQAEIANKLVFIE 162 L++ +NK D +K ER + EI KL+F++ Sbjct: 288 DAGRALVVAINKWDGLKEEERDWVKREIDRKLMFLD 323 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 9/166 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 V LVG N GKSTL NR ++ ++V TR RGI + + +V DT G Sbjct: 4 TVVLVGRPNVGKSTLFNRLTKSRDALVADLPGLTRDRHYGRGIGASQPYLVV--DTGGFE 61 Query: 82 NAKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 DS K M + I AD++ +VD + ++ + + ++L +NK Sbjct: 62 PNTDSGILKAMAVQTLLAIDEADVIIFLVDGRQGATPQDMEIANRLRRSKCPVLLAVNKT 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + + + + AE + + +S+ G G D+++ + Sbjct: 122 EGMN--KAVVSAEFHE--LGLGDPLSISSAHGEGVKDIIDLALESF 163 >gi|292806576|gb|ADE42418.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + EQ+ A + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEK---EQS-YAFSSFGMPKSFNISVSHNRGISALIDAILRALNL 168 >gi|302550423|ref|ZP_07302765.1| ribosome-associated GTPase EngA [Streptomyces viridochromogenes DSM 40736] gi|302468041|gb|EFL31134.1| ribosome-associated GTPase EngA [Streptomyces viridochromogenes DSM 40736] Length = 498 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 60 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 119 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I AD V VVD+ +++ + K ++L NK+D Sbjct: 120 VLGIDASVAAQAEYAIDAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGQ 179 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A L E + VSA G G D+L+ + LP AP Sbjct: 180 SGE---ADATYLWSLGLGEP-YPVSALHGRGTGDMLDQVLEVLPEAP 222 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+L+N+ + +V TTR V ++ F+DT GI Sbjct: 237 IALIGRPNVGKSSLLNKVANEERVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 296 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + A I ++D+ + V ++ + ++L N Sbjct: 297 HLQQGADYYASLRTAAAVEKAEVAVI---LIDASESISVQDQRIVTMAVEAGRAIVLAYN 353 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 354 KWDTLDEER 362 >gi|157694475|ref|YP_001488937.1| tRNA modification GTPase TrmE [Bacillus pumilus SAFR-032] gi|205829058|sp|A8FJG0|MNME_BACP2 RecName: Full=tRNA modification GTPase mnmE gi|157683233|gb|ABV64377.1| tRNA modification GTP-binding protein TrmE [Bacillus pumilus SAFR-032] Length = 459 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIIGRPNVGKSSLLNSLVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ EL L + ++ +I+I+NK Sbjct: 279 IRETEDIVERIGVERSRQVLKEADLILLVLNYSEELSEEDIKLFEAVSGMD--IIVIVNK 336 Query: 140 ID 141 D Sbjct: 337 TD 338 >gi|154339145|ref|XP_001562264.1| GTP-binding protein-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062847|emb|CAM39292.1| putative ras-like small GTPases [Leishmania braziliensis MHOM/BR/75/M2904] Length = 511 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 12/142 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VA+VG TN+GK++LVNR +G + + TTR + + K ++ +DT G+ Sbjct: 245 VAIVGRTNSGKTSLVNRLLGYERNRAADATNTTRDPIEIPCTYKGKKLKLIDTAGLARQR 304 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 + + + LS I++A +V +V D+ E N +D+ L +A+ +L N Sbjct: 305 YRTDREFLSCIHNLSLKEIRYAHVVIVVFDAT-EGHPNKYDMSILHTVAQEGRPFVLCAN 363 Query: 139 KIDCVKPERLLEQAEIANKLVF 160 K D V L+Q+ A + F Sbjct: 364 KWDAV-----LDQSATAEAIDF 380 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 12/157 (7%) Query: 25 VALVGATNAGKSTLVNRF-----VGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 VA+VG N+GKS+L N + AK +IV TR V + +DTPG Sbjct: 45 VAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAVLNDLHFTIIDTPG 104 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K ++ ++ T++ AD V ++ HDL++ +A + L++NK Sbjct: 105 LVGGK------LVEEAFRTVETADAAIFVTAVDEDVSTEEHDLIQYLAAKKLPACLLVNK 158 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +D V E ++ N L + SA K G D Sbjct: 159 MDLVPEEDEALVLDVYNHL-GLGNAIPFSARKREGLD 194 >gi|317968893|ref|ZP_07970283.1| GTP-binding protein Der [Synechococcus sp. CB0205] Length = 454 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKSTLVNR ++ +IV + TR ++ +DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQQGYWRDRHFKVVDTGGLVFDD 65 Query: 85 DSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 DS IR + + A + ++ D + L + + + + ++L +NK C Sbjct: 66 DSEFLPEIREQANLALSEASVAVVIADGQQGLTAADESIAEWLRGHNVPVLLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 PE L A L E F +SA G G D+L+ + LP A Sbjct: 124 SPEAGLAMAAEFWSLGLGE-PFPISAIHGAGTGDLLDRMVDHLPAA 168 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N G K +IV+ TTR + + + LDT GI + Sbjct: 179 MAIVGRPNVGKSSLLNAVCGEKRAIVSPIRGTTRDTIDTSIEREGKPWKLLDTAGIRRRR 238 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I S+ I+ +D+ LV+D+ + L I + ++++NK D Sbjct: 239 SVNYGPEYFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEEEGRACVVVVNKWD 298 Query: 142 CVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHGCDDVL 179 ++ + A E+ KL F++ M+ SA G + + Sbjct: 299 AIEKDSHTMPAMEKELRAKLYFLDWAPMLFTSALTGQRVESIF 341 >gi|239637283|ref|ZP_04678270.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603] gi|239597120|gb|EEQ79630.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603] Length = 459 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L + L + ++ +I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSQADLILFVLNNNEALTEDDQTLYDVV--KNEDVIVIINK 336 Query: 140 IDC 142 D Sbjct: 337 TDL 339 >gi|114762884|ref|ZP_01442316.1| GTP-binding protein HflX [Pelagibaca bermudensis HTCC2601] gi|114544494|gb|EAU47501.1| GTP-binding protein HflX [Roseovarius sp. HTCC2601] Length = 417 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 14/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + ++ DT G + Sbjct: 198 IVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRAVKLPTGIDVILSDTVGFISD 257 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIA-KRSSRLILILN 138 + R + + ADI+ V D SH E ++ +L + L+ + N Sbjct: 258 LPTELVAAFRATLEEVLAADIIVHVRDISHPNTEEQAADVAAILDSLGVDEEVPLVELWN 317 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K D + P E +L++A E F VSA G G D +L + L Sbjct: 318 KTDRLAPDVHEGVLQRAARE------ENIFAVSALTGEGLDTMLEAITERL 362 >gi|28872710|ref|NP_795329.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str. DC3000] gi|213968446|ref|ZP_03396589.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato T1] gi|301384266|ref|ZP_07232684.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato Max13] gi|302063883|ref|ZP_07255424.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato K40] gi|302131967|ref|ZP_07257957.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato NCPPB 1108] gi|32171793|sp|Q87TS2|MNME_PSESM RecName: Full=tRNA modification GTPase mnmE gi|28855966|gb|AAO59024.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str. DC3000] gi|213926734|gb|EEB60286.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato T1] Length = 456 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ +++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|332969368|gb|EGK08393.1| GTP-binding protein HflX [Kingella kingae ATCC 23330] Length = 378 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 82/163 (50%), Gaps = 18/163 (11%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG TNAGKSTL NR + V T + R + E+ I+ DT G +D Sbjct: 216 AIVGYTNAGKSTLFNRLTKSDVLAKDQLFATLDTTARRLYLNPEASIILTDTVGFV--QD 273 Query: 86 SYHKLMIRLSWSTIKH---ADIVCLVVD-SHRELKVNIHD---LLKEIAKRSSRLILILN 138 HKL+ S +T++ AD++ +VD S EL+ I D +L EI IL+ N Sbjct: 274 LPHKLVSAFS-ATLEETALADVLLHLVDASDPELERKIQDVNNVLAEIKADKIPQILVYN 332 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFM---VSATKGHGCDDV 178 KID + P+ EQ+ A L +++ VSA+ G G DD+ Sbjct: 333 KIDLL-PK--TEQS--AGYLRDLQQQITAVRVSASSGAGLDDL 370 >gi|15614201|ref|NP_242504.1| GTP-binding protein EngA [Bacillus halodurans C-125] gi|20137999|sp|Q9KCD4|DER_BACHD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|10174255|dbj|BAB05357.1| BH1638 [Bacillus halodurans C-125] Length = 437 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +V+IV + TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVAIVEDRPGVTRDRIYSHGEWLNREFNVIDTGGIEIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + M + IK AD++ +V+ + ++ K + + ++L +NKID Sbjct: 65 DEPLLVQMRAQAELAIKEADVIIFIVNGREGVTAADQEVAKLLFRSKKPVVLGVNKID-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ E E + + I +S G G D+L+ P Sbjct: 123 HPDMQEELYEFYS--LGIGDPIPISGAHGLGLGDLLDACVEHFP 164 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 6/144 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 ++L+G N GKS+LVN +G + IV++ TTR + S + + V +DT G+ Sbjct: 178 ISLIGRPNVGKSSLVNAMLGEERVIVSNIPGTTRDAIDTAFSRDDQEYVLIDTAGMRKRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + S I+ +D+V +V++ + + + +I+++NK D Sbjct: 238 KVYESTEKYSVLRSLKAIERSDVVLVVLNGEEGIIEQDKKIAGYAHEAGRAIIIVVNKWD 297 Query: 142 CV-KPERLLE--QAEIANKLVFIE 162 V K ++ L Q +I ++ F++ Sbjct: 298 AVEKDDKTLHRFQQKIRDEFQFLD 321 >gi|259500656|ref|ZP_05743558.1| ribosome-associated GTPase EngA [Lactobacillus iners DSM 13335] gi|259168040|gb|EEW52535.1| ribosome-associated GTPase EngA [Lactobacillus iners DSM 13335] Length = 442 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 6/168 (3%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 DN VALVG N GKST+ NR + ++V+IV + TR + Q V +DT Sbjct: 6 DNMSLPVVALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDT 65 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILI 136 GI + + + + I AD++ ++ D + N+ + + +I ++ + +IL Sbjct: 66 GGITFEDNVIEEQIKTQAEIAINEADVIVMLSDVTGHV-TNLDETIAKILYKAKKPIILA 124 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 +NK D PE+ + + + + + VS + G G D+L+ + S Sbjct: 125 INKAD--NPEQRNDIYDFYS--LGLGDPIPVSGSHGTGLGDLLDAIVS 168 Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +++G N GKS++VN +G IV TTR + I + + +DT GI Sbjct: 185 SIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGIRRKGK 244 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDS 111 Y K+ + S S I+ +D+ +V+D+ Sbjct: 245 VYEKVEKYSVMRSISAIEQSDVAIIVIDA 273 >gi|254464339|ref|ZP_05077750.1| GTP-binding proten HflX [Rhodobacterales bacterium Y4I] gi|206685247|gb|EDZ45729.1| GTP-binding proten HflX [Rhodobacterales bacterium Y4I] Length = 423 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 10/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + +I+ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRRVELPDGPEIILSDTVGFISN 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIAKRSSRL-ILILN 138 + R + + AD++ V D SH + K D +L + +R+ I + N Sbjct: 264 LPTELVAAFRATLEEVLAADVILHVRDISHHDSKQQAEDVEAILASLGVDENRVRIEVWN 323 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTF-MVSATKGHGCDDVLNYLCSTL 186 K+D + PE E+AE + E +SA G G D +L + L Sbjct: 324 KLDQL-PE---EEAEARRQRAEREDGIHAISALTGEGLDGLLADIAEKL 368 >gi|21233655|ref|NP_639572.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770621|ref|YP_245383.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. campestris str. 8004] gi|25009496|sp|Q8P340|MNME_XANCP RecName: Full=tRNA modification GTPase mnmE gi|81303432|sp|Q4UNL0|MNME_XANC8 RecName: Full=tRNA modification GTPase mnmE gi|21115528|gb|AAM43454.1| thiophene and furan oxidation protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575953|gb|AAY51363.1| thiophene and furan oxidation protein [Xanthomonas campestris pv. campestris str. 8004] Length = 446 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 14/170 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + +R + + ++ AD+ +V+D+ R+ + D L + R + I NK D + Sbjct: 281 IEREGMRRARAELQRADLALIVLDA-RDPQA-ARDALGDAIDAVPRRLWIHNKCDLLAVA 338 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 ++ IA VSA G G + L+ L L + S D Sbjct: 339 GPMDADAIA-----------VSAVTGQGLEH-LHTRLRELALGDGIESVD 376 >gi|148543995|ref|YP_001271365.1| GTP-binding protein EngA [Lactobacillus reuteri DSM 20016] gi|184153389|ref|YP_001841730.1| GTP-binding protein EngA [Lactobacillus reuteri JCM 1112] gi|194467923|ref|ZP_03073909.1| small GTP-binding protein [Lactobacillus reuteri 100-23] gi|166920101|sp|A5VJK4|DER_LACRD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229784134|sp|B2G718|DER_LACRJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148531029|gb|ABQ83028.1| small GTP-binding protein [Lactobacillus reuteri DSM 20016] gi|183224733|dbj|BAG25250.1| GTP-binding protein [Lactobacillus reuteri JCM 1112] gi|194452776|gb|EDX41674.1| small GTP-binding protein [Lactobacillus reuteri 100-23] Length = 437 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 IVAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEIS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + + I AD++ V D ++ + D +++A+ RS++ ++L +NK Sbjct: 65 DQPLLTQIRQQAEIAIDEADVIIFVAD----VENGVTDADEQVARILYRSNKPVVLAVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D PER +++I + + + + VS+ G G D+L+ + P Sbjct: 121 VD--NPER---RSDIYDYYSLGLGEPYAVSSVHGIGMGDLLDAVIKEFP 164 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 12/127 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 + +G N GKS+LVN +G IV++ TTR + + Q +DT GI Sbjct: 178 SFIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTQFETADGQKFTMVDTAGIRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILIL 137 Y + + S I +D+V +V+++ I +L K IA + +I+++ Sbjct: 238 KIYENTERYSLMRSMRAIDDSDVVLVVLNAEE----GIRELDKHIAGYAHEAGCGVIIVV 293 Query: 138 NKIDCVK 144 NK D +K Sbjct: 294 NKWDTLK 300 >gi|116620284|ref|YP_822440.1| GTP-binding protein, HSR1-related [Candidatus Solibacter usitatus Ellin6076] gi|116223446|gb|ABJ82155.1| GTP-binding protein, HSR1-related [Candidatus Solibacter usitatus Ellin6076] Length = 394 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 77/193 (39%), Gaps = 21/193 (10%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 +AL G TNAGKSTL NR A V + T VR +V +++ DT G Sbjct: 153 ATLALAGYTNAGKSTLFNRLTRASVLADSKMFATLDPTVRPLVLPSRRRVLMSDTVGFIR 212 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILILN 138 + R + + A ++ VVD+ E ++ +L EI IL+LN Sbjct: 213 NLPTTLVKAFRATLEEVNEAALILHVVDASSPTAPEHTAHVLKVLAEIGAHEVPQILVLN 272 Query: 139 KI---------DCVKPERLLEQAEIA------NKLVFIEK--TFMVSATKGHGCDDVLNY 181 K+ RLL A + VF K +SAT G G D ++ Sbjct: 273 KVDLLAAGDADAASLQRRLLAGLGAAHGEDDPDPSVFSGKMRAVAISATSGAGIDTLMAA 332 Query: 182 LCSTLPLAPWVYS 194 + LPL P V + Sbjct: 333 IDEVLPLDPVVRA 345 >gi|332519774|ref|ZP_08396238.1| ribosome-associated GTPase EngA [Lacinutrix algicola 5H-3-7-4] gi|332044333|gb|EGI80527.1| ribosome-associated GTPase EngA [Lacinutrix algicola 5H-3-7-4] Length = 435 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + +DT GI Sbjct: 179 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFDFNLVDTAGIRKKSK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I+H+D+ LVVD++R + ++ +A+R+ + I+IL NK D Sbjct: 239 VKEDLEFYSVMRSVRAIEHSDVCLLVVDANRGFDGQVQNIF-WLAERNRKGIVILVNKWD 297 Query: 142 CVKPE 146 V+ + Sbjct: 298 LVEKD 302 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 5/163 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKST NR + + +IV TR G + +DT G Sbjct: 2 SNIVAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGKEFSLIDTGGYV 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + I I+ AD + +VD + D+ + + K + + L++NK+ Sbjct: 62 KGSDDIFEAEIDKQVELAIEEADAIIFMVDVEAGVTGMDEDVARLLRKVTKPVFLVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 D K R + E + + + F +++ G G D+L+ L Sbjct: 122 DNGK--RAEDAVEFYS--LGLGDYFTIASINGSGTGDLLDALV 160 >gi|299135903|ref|ZP_07029087.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX8] gi|298602027|gb|EFI58181.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX8] Length = 506 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 7/175 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG +ALVG NAGKS+L NR + +IVT TTR V ++ + +DT G Sbjct: 227 RSGASLALVGRPNAGKSSLFNRLLERDRAIVTPLPGTTRDTVEESLALGGIPLRLIDTAG 286 Query: 80 IF----NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 + D L I S + AD+V L+ D+ + + L + R +L Sbjct: 287 LRLQGDRPADEAEALGIARSHEALADADLVLLIHDATQTMTEEERTLAASLEGRPH--LL 344 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +LNKID + L+ +K S+ KG G + S LAP Sbjct: 345 VLNKIDLQGSDFSLKSTAFMSKGTNFSSQDTSSSLKGTGFSPYIPTRQSKGALAP 399 >gi|242255936|gb|ACS88952.1| GTPase [Helicobacter pylori] gi|242255938|gb|ACS88953.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KDRAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLNL 168 >gi|228474138|ref|ZP_04058875.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119] gi|228271833|gb|EEK13170.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119] Length = 459 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L L + I + I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTEEDRTLYEVIKNEDA--IVIVNK 336 Query: 140 IDCVKPERLLEQAEI 154 D ER L+ E+ Sbjct: 337 TDL---ERRLDIEEV 348 >gi|225027089|ref|ZP_03716281.1| hypothetical protein EUBHAL_01345 [Eubacterium hallii DSM 3353] gi|224955553|gb|EEG36762.1| hypothetical protein EUBHAL_01345 [Eubacterium hallii DSM 3353] Length = 409 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 6/139 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + G NAGKS++VN G ++++V+ K TT + + + ++ +DTPG F+ Sbjct: 14 IGFFGRRNAGKSSVVNAVTGQELAVVSDTKGTTTDPVSKAMELLPLGPVMIIDTPG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K +L +R + + DI LV+D+ +K +LL ++ +L+ NK D + Sbjct: 73 KGHLGELRVRKTKQILNRTDIAVLVIDATEGIKQCEEELLAIFKEKEIPYLLVYNKEDIL 132 Query: 144 KPER--LL--EQAEIANKL 158 E+ LL EQ+E N + Sbjct: 133 SEEQKNLLRTEQSEQVNSI 151 >gi|195954215|gb|ACG58813.1| YphC [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|170076776|ref|YP_001733414.1| GTPase of unknown function [Synechococcus sp. PCC 7002] gi|169884445|gb|ACA98158.1| GTPase of unknown function [Synechococcus sp. PCC 7002] Length = 533 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 13/124 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT------RSIVRGIVSEKESQIVFLDTP 78 VA+ G +AGK++LVN +G V V + TT R ++G+ QI+ DTP Sbjct: 135 VAVFGTGSAGKTSLVNALIGQMVGNVEATMGTTQTGQTYRLKLKGV----NRQILITDTP 190 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 GI A ++ + RL+ +AD++ VVD+ +L+ + +D L E+A+ R +L+ N Sbjct: 191 GILEAGEAGIQ-RDRLARELATNADLLIFVVDN--DLRQSEYDPLCELAEIGKRSLLVFN 247 Query: 139 KIDC 142 KID Sbjct: 248 KIDV 251 >gi|218781934|ref|YP_002433252.1| GTP-binding protein EngA [Desulfatibacillum alkenivorans AK-01] gi|226741134|sp|B8FM51|DER_DESAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218763318|gb|ACL05784.1| small GTP-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 445 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 11/179 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF- 81 +A++G N GKSTL NR ++ ++V TR R + + F +DT G Sbjct: 4 LAIMGRPNVGKSTLFNRITKSRKAMVDDSPGVTRD--RNYADAEHDGVKFSVVDTGGFSK 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N D++ L+ I+ AD + +V D DLL + + ++NKID Sbjct: 62 NDPDAFVDLIHFQVNQAIEEADAIAMVFDGKDGPSPFDRDLLSVLRPLDKPIFYLVNKID 121 Query: 142 CVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQIS 199 + E L+ AE+ ++K VS G+G L+ + LP A D IS Sbjct: 122 SLDMEYLMADFAELG-----VDKLHPVSGEHGYGVPTFLDMVVKVLPKASPKLEEDMIS 175 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 3/124 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + +VG NAGKS+L+N+ +G + +V+ TTR V + + LDT GI Sbjct: 175 SIGVVGRPNAGKSSLINKILGQERLLVSDTPGTTRDAVDTVCQVNGKPYLLLDTAGIRRK 234 Query: 84 KDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 HKL I + ++ D+ +++D+ + + +R I + NK Sbjct: 235 GKVKHKLEKFSIVRALKGLERCDVALVMLDATEGITDQDVHIAGYAEERKCGCIFLANKW 294 Query: 141 DCVK 144 D VK Sbjct: 295 DLVK 298 >gi|122702291|emb|CAL88336.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----TPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|308375656|ref|ZP_07668082.1| putative small GTP-binding protein domain protein [Mycobacterium tuberculosis SUMu007] gi|308345614|gb|EFP34465.1| putative small GTP-binding protein domain protein [Mycobacterium tuberculosis SUMu007] Length = 215 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 22/210 (10%) Query: 7 TFFNEHKDFVQDNSR---SGC---VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 T+ +E D+ D+S SG VA+VG N GKSTLVNR +G + ++V TR Sbjct: 6 TWVDES-DWQLDDSEIAESGAAPVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDR 64 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 V + V DT G +L+ + ++ AD V LVVD+ Sbjct: 65 VCYDALWTGRRFVVQDTGGWEPNAKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADE 124 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + + + + L NK+D K E + A + + + + + +SA G G D+L+ Sbjct: 125 AAARILLRSGKPVFLAANKVDSEKGES--DAAALWS--LGLGEPHAISAMHGRGVADLLD 180 Query: 181 YLCSTLP-----------LAPWVYSADQIS 199 + + LP LA W +S + S Sbjct: 181 GVLAALPEVGSPRRRAAVLAGWRWSVSRTS 210 >gi|284045183|ref|YP_003395523.1| ribosome-associated GTPase EngA [Conexibacter woesei DSM 14684] gi|283949404|gb|ADB52148.1| ribosome-associated GTPase EngA [Conexibacter woesei DSM 14684] Length = 484 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 13/160 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +AL+G N GKS+LVN+ +G+ IV+ TTR + ++ +++ +DT G+ Sbjct: 176 LALIGRPNVGKSSLVNKMLGSDRVIVSEVAGTTRDAIDLPFRFEDRRLILVDTAGMRRQA 235 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSS-RLILILNK 139 DS S + AD+ +V D+ V DL + E+A +S L+LNK Sbjct: 236 KVGDSIEYYTALRSRRAAERADVALVVCDAQE--GVTSQDLRIAELAMQSGCATALVLNK 293 Query: 140 IDCV----KPERLL--EQAEIANKLVFIEKTFMVSATKGH 173 D +PE L E+A + NKL + SA G Sbjct: 294 WDLTGGEDEPEFDLDHERARVNNKLRLRPRVLTTSAKTGR 333 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKS+LVNR ++ ++V + TR + +DT G+ Sbjct: 3 VAVVGYPNVGKSSLVNRLTQSREAVVHERPGVTRDRKELQTEWNGRRFTLIDTGGVDLED 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D + + + + + A + VVD+ L+ ++ + + +IL NK+D V Sbjct: 63 RDEMQRSIQEQARAALADAQLALFVVDAQAGLRPGDEEMADLLRRTHVPVILAANKVDSV 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K L AE L F + VSA +G G D+L+ + S LP Sbjct: 123 KDVTL--AAEF-YALGFGDPV-AVSAAQGLGTGDLLDRVVSRLP 162 >gi|257485604|ref|ZP_05639645.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011892|gb|EGH91948.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 456 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ +++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|242255968|gb|ACS88968.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDS-YHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ K + L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|237747713|ref|ZP_04578193.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13] gi|229379075|gb|EEO29166.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13] Length = 446 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 8/170 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + M + + + AD+V +VD + + + + + K +IL +NK + Sbjct: 64 VKEGVMQEMAKQTKQAVAEADVVIFIVDGRQGITPHDKAITDYLRKSGRPVILAVNKAEG 123 Query: 143 VKPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +K A +A+ +L ++S+ G G +L+ +PL+P Sbjct: 124 MK-----YTAVVADFYELGLGSDPLVISSAHGDGVHTLLDEALKMVPLSP 168 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 6/185 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E +D ++ + +A+VG N GKST++N +G + I TTR + Sbjct: 170 ETEDEIESGQKHIKLAIVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIEIPFERDGK 229 Query: 71 QIVFLDTPGIFNAKDSYH---KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 Q +DT G+ + K + + I A++V L++D+ +++ + + Sbjct: 230 QYTLVDTAGLRKRGKVFQAIEKFSVVKTLQAISEANVVLLLMDAQQDISEQDAHIAGFVL 289 Query: 128 KRSSRLILILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCS 184 + L++ +NK D + ++ E ++E+ KL F+ K VSA K G ++ + S Sbjct: 290 ESGRALVVGINKWDGLDQDKRKEIKSEVERKLHFLSFAKFHYVSALKSTGISALMRSIDS 349 Query: 185 TLPLA 189 A Sbjct: 350 AYAAA 354 >gi|220924493|ref|YP_002499795.1| GTP-binding protein EngA [Methylobacterium nodulans ORS 2060] gi|219949100|gb|ACL59492.1| small GTP-binding protein [Methylobacterium nodulans ORS 2060] Length = 447 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V + TR G +DT G+ A Sbjct: 5 TVAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEARLGHLLFTIIDTAGLEEA 64 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +S M + + I AD V V+D+ L + E+ +R+ + +IL+ NK + Sbjct: 65 DSESLAGRMRAQTEAAIAEADAVLFVIDARAGL-LPADQPFAELVRRADKPVILLANKAE 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + VSA G G +L+ L LP Sbjct: 124 GGA----GLAGAYEAFGLGLGDPVPVSAEHGEGMGQLLDALAEVLP 165 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 8/170 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+NR +G +V + TR + + +I DT G+ Sbjct: 182 VAIVGRPNAGKSTLINRMLGENRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMRRRA 241 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D KL + ++ A++V +++D+ + ++ + + L++ LNK D Sbjct: 242 RVDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQDLTIVDLVEQEGRALVIGLNKWD 301 Query: 142 CV--KPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLCSTL 186 V +P L E E A +L+ + V S G+G D ++ + + Sbjct: 302 LVADQPGLLKELKEKAARLLPQVRGAAVVPLSGLAGNGIDRLMQAVVAAF 351 >gi|148285155|ref|YP_001249245.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Boryong] gi|205415786|sp|A5CFM7|MNME_ORITB RecName: Full=tRNA modification GTPase mnmE gi|146740594|emb|CAM81244.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Boryong] Length = 447 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 8/126 (6%) Query: 21 RSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V A+ G TN GKS+L+N + +IV+ TTR ++ + I+ DT G Sbjct: 215 RHGIVLAITGETNTGKSSLLNYLTMREAAIVSDIPGTTRDVIEAHLDIGGYPIIVRDTAG 274 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILIL 137 I + D + I+ S K++DI L++D+ VN I LL ++ I+++ Sbjct: 275 IRESDDPIEQEGIKRSLVAFKNSDIRILMIDATNINSVNQTIAHLLNDVYT-----IIVI 329 Query: 138 NKIDCV 143 NKID V Sbjct: 330 NKIDLV 335 >gi|122702399|emb|CAL88390.1| GTPase [Helicobacter pylori] gi|122702503|emb|CAL88442.1| GTPase [Helicobacter pylori] gi|122702831|emb|CAL88605.1| GTPase [Helicobacter pylori] gi|195954199|gb|ACG58805.1| YphC [Helicobacter pylori] gi|195954201|gb|ACG58806.1| YphC [Helicobacter pylori] gi|195954203|gb|ACG58807.1| YphC [Helicobacter pylori] gi|195954213|gb|ACG58812.1| YphC [Helicobacter pylori] gi|195954221|gb|ACG58816.1| YphC [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702329|emb|CAL88355.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYTFSSFG-----TPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|163939419|ref|YP_001644303.1| GTP-binding protein EngA [Bacillus weihenstephanensis KBAB4] gi|229010911|ref|ZP_04168107.1| GTP-binding protein engA [Bacillus mycoides DSM 2048] gi|229058239|ref|ZP_04196627.1| GTP-binding protein engA [Bacillus cereus AH603] gi|229132411|ref|ZP_04261265.1| GTP-binding protein engA [Bacillus cereus BDRD-ST196] gi|229166450|ref|ZP_04294206.1| GTP-binding protein engA [Bacillus cereus AH621] gi|229710726|sp|A9VMB3|DER_BACWK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163861616|gb|ABY42675.1| small GTP-binding protein [Bacillus weihenstephanensis KBAB4] gi|228617024|gb|EEK74093.1| GTP-binding protein engA [Bacillus cereus AH621] gi|228651117|gb|EEL07098.1| GTP-binding protein engA [Bacillus cereus BDRD-ST196] gi|228720103|gb|EEL71687.1| GTP-binding protein engA [Bacillus cereus AH603] gi|228750311|gb|EEM00141.1| GTP-binding protein engA [Bacillus mycoides DSM 2048] Length = 436 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I AD++ + + + ++ K + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVD-- 122 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ +++I + L F E F +S T G G D+L+ + P Sbjct: 123 NPDM---RSDIYDFYALGFGEP-FPISGTHGLGLGDLLDEAANHFP 164 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +I+++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 AVK 300 >gi|194016355|ref|ZP_03054969.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061] gi|194011828|gb|EDW21396.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061] Length = 459 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT GI +D Sbjct: 226 IIGRPNVGKSSLLNSLVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + S +K AD++ LV++ EL L + ++ +I+I+NK D Sbjct: 286 VERIGVERSRQVLKEADLILLVLNYSEELSEEDIKLFEAVSGMD--IIVIVNKTD 338 >gi|122700627|emb|CAL87902.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ + + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGVPKSFNISVSHNRGISTLIDAVLDALNL 168 >gi|121533669|ref|ZP_01665496.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1] gi|121307660|gb|EAX48575.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1] Length = 597 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG TNAGKSTL+N A V T R + + + DT G Sbjct: 378 TLALVGYTNAGKSTLLNTLTNASVLAEDKLFATLDPTTRRLKLPNGQEALLTDTVGFI-- 435 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRLILIL 137 + H+L+ R + + +AD++ +VD+ + E ++ ++L+E+ + +I + Sbjct: 436 QKLPHQLIAAFRATLEEVVYADLLLHIVDASHPRYEEQMDSVFEVLRELQADTKDIITVF 495 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + E I +LV + +SA G G D +L + + L Sbjct: 496 NKIDKI------ENPNIIARLVRESGSVAISALTGLGIDSLLEQVQNKL 538 >gi|323491083|ref|ZP_08096274.1| GTPase HflX [Vibrio brasiliensis LMG 20546] gi|323314663|gb|EGA67736.1| GTPase HflX [Vibrio brasiliensis LMG 20546] Length = 429 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TVSLVGYTNAGKSTLFNRITAAGVYAADQLFATLDPTLRKIELNDVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE +H++L+EI +L++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDDRFRENIQAVHEVLEEIDAHEVPSLLVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ ++ I + + VSA +G G + + L L Sbjct: 317 NKIDNLEDQK----PRIERDEEGVPRAVWVSAMEGIGTELLFEALKERL 361 >gi|253580120|ref|ZP_04857387.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848639|gb|EES76602.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 411 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 36/206 (17%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E++ +H++ ++ + G A+VG TNAGKSTL+N G++V T Sbjct: 178 ELSQVEKHRELIRSSRARGNMKTAAIVGYTNAGKSTLLNTLTGSEVLSEDKLFATLDPTT 237 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKL---MIRLSWSTI---KHADIVCLVVDS---H 112 R + + QI+ DT G HKL ++ ST+ K+AD + VVDS Sbjct: 238 RLLNLKDGQQILLTDTVGFI------HKLPHHLVEAFKSTLEEAKYADYIIHVVDSSNQQ 291 Query: 113 RELKVN-IHDLLKEIAKRSSRLILILNKID----CVKPERLLEQAEIANKLVFIEKTFMV 167 E++++ +++ LKE+ ++I + NK D CV + + T V Sbjct: 292 AEMQMHVVYETLKELGVMGKKIITLFNKQDAPGACVLRD------------FKSDYTLKV 339 Query: 168 SATKGHGCDDVLNYLCSTLPLAPWVY 193 SA G G D LN L L +Y Sbjct: 340 SAKTGEGLAD-LNDLLEKLLAEEQIY 364 >gi|159902929|ref|YP_001550273.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9211] gi|226706248|sp|A9BE09|DER_PROM4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|159888105|gb|ABX08319.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9211] Length = 456 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 8/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N G +IV+ TTR + ++ ++ +DT GI + Sbjct: 180 LAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTIDTLLKREQQAWKLIDTAGIRRRR 239 Query: 85 D-SYHK--LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 SY I S I+ +D+ LV+D+ + L I + ++++NK D Sbjct: 240 SVSYGPEYFGINRSLKAIERSDVCLLVIDALDGVTEQDQRLAGRIEQEGKACLVVVNKWD 299 Query: 142 CVKPERL---LEQAEIANKLVFIEKTFMV--SATKGHGCDDVLN 180 V+ + L + E+ +KL F++ M+ SA G + N Sbjct: 300 AVEKDTYTMPLMEKELRSKLYFLDWADMLFTSALTGQRVQLIFN 343 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKSTLVNR G++ +IV + TR + + +DT G +F+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCGSREAIVDDQPGVTRDRTYQDAFWADREFKVVDTGGLVFDD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + A + +VVD + ++ + ++ +NK C Sbjct: 66 ESEFLPEIRQQAKLALSEASVALIVVDGQEGVTTADKEIASWLRHCECPTLVAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE+ L A L E + VSA G G ++L+ + LP Sbjct: 124 SPEQGLAMAADFWSLGLGEP-YPVSAIHGSGTGELLDQVILLLP 166 >gi|91227452|ref|ZP_01261816.1| GTP-binding protein HflX [Vibrio alginolyticus 12G01] gi|254230082|ref|ZP_04923480.1| GTPase of unknown function subfamily, putative [Vibrio sp. Ex25] gi|262393034|ref|YP_003284888.1| GTP-binding protein HflX [Vibrio sp. Ex25] gi|269967705|ref|ZP_06181754.1| GTP-binding protein HflX [Vibrio alginolyticus 40B] gi|91188602|gb|EAS74893.1| GTP-binding protein HflX [Vibrio alginolyticus 12G01] gi|151937416|gb|EDN56276.1| GTPase of unknown function subfamily, putative [Vibrio sp. Ex25] gi|262336628|gb|ACY50423.1| GTP-binding protein HflX [Vibrio sp. Ex25] gi|269827683|gb|EEZ81968.1| GTP-binding protein HflX [Vibrio alginolyticus 40B] Length = 429 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TVSLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIELADVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE +H++L+EI ++++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVHEVLEEIDAHEVPTLVVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + ++ I + + VSA G G D + L L Sbjct: 317 NKIDNLDSQK----PRIERDEEGVPRAVWVSAMDGLGIDVLFEALTERL 361 >gi|330876348|gb|EGH10497.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 456 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ +++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|325571137|ref|ZP_08146709.1| ribosome-associated GTPase EngA [Enterococcus casseliflavus ATCC 12755] gi|325156222|gb|EGC68408.1| ribosome-associated GTPase EngA [Enterococcus casseliflavus ATCC 12755] Length = 436 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI + Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ + S RE + +L+ + +S++ +IL +NK+D Sbjct: 65 DEPFMDQIKHQAEIAIDEADVIVFIT-SAREGVTDADELVARLLYKSNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + E + + + +S + G G DVL+ Sbjct: 123 -NPEMRNDIYEFYG--LGLGDPYPISGSHGLGIGDVLD 157 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + IV+ TTR +I SE + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGMRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I+ +D+V +V+++ ++ + + +I+++NK D Sbjct: 238 KVYESTEKYSVMRAMRAIERSDVVLMVLNAEEGIREQDKRIAGYAHEAGRGIIIVVNKWD 297 Query: 142 CVKPE 146 +K E Sbjct: 298 TLKKE 302 >gi|240850057|ref|YP_002971450.1| GTP-binding protein EngA [Bartonella grahamii as4aup] gi|240267180|gb|ACS50768.1| GTP-binding protein EngA [Bartonella grahamii as4aup] Length = 474 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 13/168 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V K TR R I + K + F +DT G+ Sbjct: 4 TIAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRD--RRIHAAKLQDLRFDVVDTAGLE 61 Query: 82 NAKDSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 A D H L R+ T I AD++ V D+ + + + + K ++L+ N Sbjct: 62 EAGD--HTLEGRMRSHTKAAIDEADLILFVFDAKSGITPSDLNFASLVRKSGKPIVLVAN 119 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K + R E + + + ++SA G G D+ + + + Sbjct: 120 KSES----RAATGGEYEAWSLGLGEPCLISAEHGLGLSDLRDAIIDAV 163 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 7/139 (5%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E ++ + D S+ +A+ G N GKSTL+N + + + + TR + + Sbjct: 192 EEEELIYDESKPIRIAIAGRPNTGKSTLINSMLKQERLLTGPEAGLTRDSISVDWEWRGR 251 Query: 71 QIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEI 126 I DT G+ ++ KL + + I+ A++V +V D+ + DL + ++ Sbjct: 252 HIKLFDTAGLRRKSKIQEKLEKLSVADTLRAIRFAEVVVIVFDA--TIPFEKQDLQIADL 309 Query: 127 AKRSSRL-ILILNKIDCVK 144 R R+ ++ NK D ++ Sbjct: 310 VIREGRVPVIAFNKWDLIE 328 >gi|326440452|ref|ZP_08215186.1| GTP-binding protein Der [Streptomyces clavuligerus ATCC 27064] Length = 482 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 46 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 105 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ +++ + + ++L NK+D Sbjct: 106 VLGIDASVAAQAEYAIEAADAVVFVVDASVGATDTDEAVVRLLRRAGKPVVLCANKVDG- 164 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P + A + + + + + VSA G G D+L+ + LP AP Sbjct: 165 -PSGEADAAALWS--LGLGEPHPVSALHGRGTGDMLDAVLEALPEAP 208 >gi|134098336|ref|YP_001103997.1| GTP-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|291004245|ref|ZP_06562218.1| GTP-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133910959|emb|CAM01072.1| GTP-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 502 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 19/179 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G TNAGKS+L+N GA V + T R + DT G + Sbjct: 280 VAIAGYTNAGKSSLLNALTGAGVLVEDALFATLDPTTRRADTPDGRPHTLTDTVGFV--R 337 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLI---- 134 H+L+ R + + AD++ VVD + + ++L EIA+ + Sbjct: 338 HLPHQLVEAFRSTLEEVTGADLLVHVVDGAEQAPHEQVAAVREVLTEIAEDHGAPVPPEL 397 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 L++NKID V P R+ E + VF VSA G G + + + LP P V+ Sbjct: 398 LVVNKIDSVAPTRMAELRRLLPGAVF------VSAHSGEGVEALREIIADRLPR-PEVF 449 >gi|122702563|emb|CAL88471.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702205|emb|CAL88293.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ ++ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|103487684|ref|YP_617245.1| GTP-binding protein EngA [Sphingopyxis alaskensis RB2256] gi|98977761|gb|ABF53912.1| Small GTP-binding protein domain [Sphingopyxis alaskensis RB2256] Length = 456 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 17/170 (10%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR +A+VG N GKSTL NR VG ++++V + TR G + +DT G Sbjct: 2 SRHATIAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTAG 61 Query: 80 IFNAKDSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAK----RSSR 132 F +D+ L R+ T ++ AD ++D+ + + L +EIA+ + Sbjct: 62 -FEDQDA-ATLPGRMRAQTEKAVREADAALFLIDA----RAGVTPLDEEIARWLRSEDTP 115 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +IL NK + + E L + A L F E F +SA G G D+ + L Sbjct: 116 VILCANKAEGKQGEAGLME---AYSLGF-ETVFALSAEHGEGLVDLFDAL 161 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 12/164 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKES---QIVFLDTPGI 80 +A+VG NAGKSTL+NR +G I + TR +R EK+ +I DT G+ Sbjct: 189 LAIVGRPNAGKSTLINRMIGEDRLITGPEAGITRDSIRVDWRWEKDGEVHEIQLFDTAGM 248 Query: 81 ---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 +D KL + + + A++V L++D+ + L+ + + + LI+ L Sbjct: 249 RKRAKVQDKLEKLSVADALHAVDFAEVVVLLLDATKGLEAQDLRIADRVLQEGRALIVAL 308 Query: 138 NKIDCVK-PERLLE--QAEIANKLVFIE--KTFMVSATKGHGCD 176 NK D + P L +A + + L ++ +S G G D Sbjct: 309 NKWDIAEDPSSLFNGVRAALDDGLSQVKGVPVLSISGATGKGID 352 >gi|330964186|gb|EGH64446.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 456 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ +++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|323307689|gb|EGA60952.1| Mss1p [Saccharomyces cerevisiae FostersO] Length = 484 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 + L+GA N GKS+LVN +SIV+ TTR + +++ +++ DT GI + Sbjct: 277 LVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKS 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 D L I + +D+ +VD K+ D+L ++ ++ R+I+++NK Sbjct: 337 SDKIEMLGIERAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIVVNKS 396 Query: 141 DCVKPERLLEQAEIANKL 158 D V + E ++ NKL Sbjct: 397 DLVSDD---EMTKVLNKL 411 >gi|217077570|ref|YP_002335288.1| small GTP-binding protein domain protein [Thermosipho africanus TCF52B] gi|217037425|gb|ACJ75947.1| small GTP-binding protein domain protein [Thermosipho africanus TCF52B] Length = 399 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 11/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS-IVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G N GKS+ +N +G VSIV++ TT + + + + +DTPG+ + Sbjct: 11 IAITGRRNVGKSSFMNALIGQDVSIVSNVAGTTTDPVFKSMELSPIGPVTLIDTPGLDDI 70 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + K I + T+ AD L+VDS +E + I ++ K++ I+++NKID Sbjct: 71 GELGQK-RIEKAKKTLYRADCGILIVDSQPKEYEHQIVEIFKQL---EIPYIIVINKIDT 126 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E + N V I K VSA K G +++ N + S +P Sbjct: 127 INSDEVEETYKKFN--VPIVK---VSALKKIGFENIGNVIDSVIP 166 >gi|160941960|ref|ZP_02089283.1| hypothetical protein CLOBOL_06852 [Clostridium bolteae ATCC BAA-613] gi|158435124|gb|EDP12891.1| hypothetical protein CLOBOL_06852 [Clostridium bolteae ATCC BAA-613] Length = 426 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 26/191 (13%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E+T K+F + A+VG TNAGKSTL+NR GA + T R Sbjct: 190 EVTRQQREKNF------ALSAAIVGYTNAGKSTLLNRLTGAGILAEDKLFATLDPTTRSY 243 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI---KHADIVCLVVD-SHRELKVNIH 120 E QI+ DT G F K +H +I ST+ +++DIV VVD S+ ++ + +H Sbjct: 244 TLEDGQQILLTDTVG-FIRKLPHH--LIEAFKSTLEEARYSDIVLHVVDCSNPQMDMQMH 300 Query: 121 ---DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATK 171 + L+E+ ++ + NK+D R LE E + ++ I + F +SA Sbjct: 301 VVKETLEELEIVDKTIVTVFNKVDRF---RELEAGENSG-VMQIPRDFSSDYQVRISART 356 Query: 172 GHGCDDVLNYL 182 G G +++ L Sbjct: 357 GEGLEELQKVL 367 >gi|156603663|ref|XP_001618879.1| hypothetical protein NEMVEDRAFT_v1g153067 [Nematostella vectensis] gi|156200746|gb|EDO26779.1| predicted protein [Nematostella vectensis] Length = 304 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G +IVT+ TTR + + +DT GI Sbjct: 48 AVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKKSK 107 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + TI+++D++ L+VD+ R + ++ K +++++NK D Sbjct: 108 VKEDLEFYSVMRAVRTIEYSDVIILMVDATRGFEGQDQNIFWLAEKNKKGVVILINKWDL 167 Query: 143 VKPE 146 V+ E Sbjct: 168 VEKE 171 >gi|122702755|emb|CAL88567.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIVLNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|83747953|ref|ZP_00944984.1| HflX [Ralstonia solanacearum UW551] gi|207723170|ref|YP_002253569.1| gtpase protein [Ralstonia solanacearum MolK2] gi|207743437|ref|YP_002259829.1| gtpase protein [Ralstonia solanacearum IPO1609] gi|83725371|gb|EAP72518.1| HflX [Ralstonia solanacearum UW551] gi|206588364|emb|CAQ35327.1| gtpase protein [Ralstonia solanacearum MolK2] gi|206594834|emb|CAQ61761.1| gtpase protein [Ralstonia solanacearum IPO1609] Length = 429 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 70/168 (41%), Gaps = 9/168 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A+ T + R + E +V DT G Sbjct: 215 SVSLVGYTNAGKSTLFNALTKARAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRD 274 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ + +L EI IL++N Sbjct: 275 LPTQLVAAFRATLEETVHADVLLHVVDAASAVKHEQME-QVDRVLAEIDASGIPQILVMN 333 Query: 139 KIDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 KID E L Q I + VSA +G G + + L T Sbjct: 334 KIDAA--EELRAQGPRIERDETGAVRRVFVSALEGAGLELLREALVET 379 >gi|299143471|ref|ZP_07036551.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517956|gb|EFI41695.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 458 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N + + +IVT TTR ++ V+ + DT G Sbjct: 218 RDGINTVILGKPNVGKSSLLNGLLRDERAIVTDIPGTTRDVITDFVNLDGILLKITDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D+ ++ + L+ +I +D++ + D+ R + +++++ I + S I++LNK Sbjct: 278 IRDTDDTVERIGVDLAKKSIDGSDLIIAIFDTSRPFDNDDYEIIRLIGNKKS--IILLNK 335 Query: 140 IDCVK 144 D K Sbjct: 336 SDLDK 340 >gi|294677339|ref|YP_003577954.1| GTP-binding proten HflX [Rhodobacter capsulatus SB 1003] gi|294476159|gb|ADE85547.1| GTP-binding proten HflX [Rhodobacter capsulatus SB 1003] Length = 427 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 93/202 (46%), Gaps = 21/202 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKS+L NR GA+V T +RG+V +I+ DT G + Sbjct: 208 IVALVGYTNAGKSSLFNRMTGAEVLAKDMLFATLDPTMRGLVLPSGRRIILSDTVGFIS- 266 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA-KRSSRLILI 136 D H+L+ R + + AD++ V D SH E + D +L+ + LI + Sbjct: 267 -DLPHELVAAFRATLEEVLEADLILHVRDISHPETEEQAEDVGEILESLGVAEDVALIEV 325 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 NKID + + Q +A VSA G G ++ + + L A W+ + Sbjct: 326 WNKIDALS--EAVRQGLLAQD-ARRSDVQAVSALSGEGIGALVAAIEARLGEA-WI---E 378 Query: 197 QISDLPMFHFTAEITREKLFLH 218 + DLP FTA +E +LH Sbjct: 379 EDLDLP---FTA--GKEHAWLH 395 >gi|224367780|ref|YP_002601943.1| TrmE [Desulfobacterium autotrophicum HRM2] gi|223690496|gb|ACN13779.1| TrmE [Desulfobacterium autotrophicum HRM2] Length = 465 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 6/134 (4%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E F++D + +A+ G N GKS+L+NR + + SIVT TTR ++ ++ Sbjct: 216 EEAHFLRDGIK---LAICGPPNVGKSSLMNRLLQKERSIVTELPGTTRDLIEETLNINGI 272 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + DT G+ D ++ I + I +D++ + + +E+ L+ I + Sbjct: 273 TFLVSDTAGMHQTDDLVERIGIERAKKHIAASDLILFMKGADKEIS---ESELQSIVPKD 329 Query: 131 SRLILILNKIDCVK 144 ++IL++NKID ++ Sbjct: 330 KKVILVINKIDLIE 343 >gi|222150246|ref|YP_002551203.1| tRNA modification GTPase TrmE [Agrobacterium vitis S4] gi|221737228|gb|ACM38191.1| tRNA modification GTPase TrmE [Agrobacterium vitis S4] Length = 436 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L+N G V+IVTH TTR I++ + + + DT GI + Sbjct: 219 VVIAGPPNAGKSSLINALAGRDVAIVTHYAGTTRDILQCDIDLEGYVVRLYDTAGIRETE 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 + + IR + ++ AD+V L+ D Sbjct: 279 EVIEQEGIRRALRKVEEADLVLLLDD 304 >gi|226493766|ref|NP_001148067.1| GTP-binding protein hflX [Zea mays] gi|195615598|gb|ACG29629.1| GTP-binding protein hflX [Zea mays] gi|195656523|gb|ACG47729.1| GTP-binding protein hflX [Zea mays] Length = 552 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 15/190 (7%) Query: 5 EITFFNEHKDFVQDNSRS---GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ +H+ ++ +S V+LVG TNAGKSTL+NR GA V T Sbjct: 307 ELESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTT 366 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--- 118 R ++ + ++ + DT G + R + I + ++ +VD L Sbjct: 367 RRVLMKNGTEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSVIVHLVDISHPLAQQQID 426 Query: 119 -IHDLLKEIAKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +LKE+ S +++ NKID +P + E+A+ + +SA G G + Sbjct: 427 AVERVLKELDVESIPKLVVWNKIDNTDEPLSVKEEAQ-------KQGIICISAMNGDGLE 479 Query: 177 DVLNYLCSTL 186 D+ N + + L Sbjct: 480 DLCNAVQAKL 489 >gi|160879242|ref|YP_001558210.1| GTP-binding proten HflX [Clostridium phytofermentans ISDg] gi|160427908|gb|ABX41471.1| GTP-binding proten HflX [Clostridium phytofermentans ISDg] Length = 438 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 24/194 (12%) Query: 15 FVQDNSRS----GCVALVGATNAGKSTLVN----RFVGAKVSIVTHK---VQTTRSIVRG 63 Q N R VALVG TNAGKST++N +F+G + V K T + VR Sbjct: 189 LTQRNQRKKNEINTVALVGYTNAGKSTVMNYMVQQFIGKEEKEVLAKDMLFATLETSVRK 248 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNI- 119 I + + + DT G + + HKL+ R + + AD++ VVD S+ + + I Sbjct: 249 INLKNRKEFLLSDTVGFVS--NLPHKLVKAFRSTLEEVCEADLLVHVVDRSNEDYQSQIE 306 Query: 120 --HDLLKEIAKRSSRLILILNKIDCVKPERLLEQA-----EIANKLVFIEKTFMVSATKG 172 + L +I +I NK D +K + + E+A E L E T ++SA KG Sbjct: 307 VTNATLSQIGAGHIPVIYAYNKADLIKTDLIKEEALQGDMEEKQMLETKEDTVLISAKKG 366 Query: 173 HGCDDVLNYLCSTL 186 G ++++ +C L Sbjct: 367 DGMNELIELICKRL 380 >gi|158301166|ref|XP_320903.3| AGAP002133-PA [Anopheles gambiae str. PEST] gi|157012341|gb|EAA00934.3| AGAP002133-PA [Anopheles gambiae str. PEST] Length = 486 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VGA N GKS+L+N VSIVT TTR IV ++ DT G Sbjct: 232 RNGVRTAIVGAPNVGKSSLINLLSQRNVSIVTSIAGTTRDIVESHYDIGGYPVILGDTAG 291 Query: 80 IFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEI-------AKRS 130 + +D I + + ++ AD++ LVVD+ R V+ D L+E A Sbjct: 292 LRQGTEDVVESEGIARARAYVESADLLLLVVDASRVETVDRLDTYLREYMETLGLDADMM 351 Query: 131 SRLILILNKID 141 SR +++LNK D Sbjct: 352 SRALIVLNKCD 362 >gi|122702653|emb|CAL88516.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIILNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|90419640|ref|ZP_01227550.1| GTP-binding protein HflX [Aurantimonas manganoxydans SI85-9A1] gi|90336577|gb|EAS50318.1| GTP-binding protein HflX [Aurantimonas manganoxydans SI85-9A1] Length = 406 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 76/193 (39%), Gaps = 23/193 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R ++I+F DT G + Sbjct: 170 VVALVGYTNAGKSTLFNRLTGAEVMAKDLLFATLDPTLRRTTLPHGTEILFSDTVGFVSD 229 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK------EIAKRSSRLILI 136 ++ R + + ADIV V D + + D+ K S ++ I Sbjct: 230 LPTHLVAAFRATLEEVIEADIVLHVRDVADPDTLAQAEDVRKILRDLDIDVDDSDHVVEI 289 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL----------------N 180 NK+D + L A + L + +VSA G G D +L + Sbjct: 290 WNKVDLLDEAGLQHLATMRESLPDTDAVHVVSAVTGFGVDTLLVDIERRIGGGTVTLTVD 349 Query: 181 YLCSTLPLAPWVY 193 + PW+Y Sbjct: 350 VAPDAMGFVPWIY 362 >gi|71735987|ref|YP_277292.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. phaseolicola 1448A] gi|123634468|sp|Q48BF3|MNME_PSE14 RecName: Full=tRNA modification GTPase mnmE gi|71556540|gb|AAZ35751.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321683|gb|EFW77782.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea str. B076] gi|320331115|gb|EFW87086.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea str. race 4] gi|330881913|gb|EGH16062.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea str. race 4] Length = 456 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G NAGKS+L+N G + +IVT TTR ++R + + +DT G+ + Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDT 277 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKI 140 +D + ++ + I AD + LVVD+ + L E ++ +++ LI NK Sbjct: 278 QDQVEMIGVQRALKAIGEADRILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKA 337 Query: 141 D 141 D Sbjct: 338 D 338 >gi|227508120|ref|ZP_03938169.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511145|ref|ZP_03941194.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577] gi|227085627|gb|EEI20939.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577] gi|227192349|gb|EEI72416.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 464 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +++G N GKS+L+N + +IVT TTR ++ + + +DT G Sbjct: 223 RDGLATSIIGRPNVGKSSLLNHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S I AD+V LV+++ L L++ K+ + I++LNK Sbjct: 283 IRDTNDKVEKIGVDRSRKAINSADLVLLVLNASEPLTEEDRQLIEATNKK--KRIVVLNK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D P + L +EI +L + SA K G L L ST+ + S+ Sbjct: 341 TDL--PIK-LNLSEI-KRLTKAQNIISTSAIKADGLKG-LEELISTMFFNEGIASS 391 >gi|212638926|ref|YP_002315446.1| GTP-binding protein EngA [Anoxybacillus flavithermus WK1] gi|212560406|gb|ACJ33461.1| Predicted GTPase [Anoxybacillus flavithermus WK1] Length = 449 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 4/170 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N VA+VG N GKST+ NR VG ++SIV TR + + +DT Sbjct: 12 ENMSKPVVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNTTFNMIDT 71 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 GI + + + + I AD++ + + + ++ K + + + ++L + Sbjct: 72 GGIDIGDEPLLTQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAV 131 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NKID P+ + E L F E +S T G G D+L+ + + P Sbjct: 132 NKID--NPD-MRENIYDFYTLGFGEP-IPISGTHGLGIGDLLDAVVAHFP 177 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 4/131 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FNA 83 L+G N GKS+LVN +G + IV+ TTR + + V +DT G+ Sbjct: 193 LIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDTTFKRDGQEYVIIDTAGMRKRGKV 252 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +S K + + I+ +D+V +V+++ + + + +++++NK D + Sbjct: 253 YESTEKYSVLRALKAIERSDVVLVVINAEEGIIEQDKKIAGYAHEAGRGVVIVVNKWDAI 312 Query: 144 -KPERLLEQAE 153 K E+ + + E Sbjct: 313 EKDEKTMNEFE 323 >gi|114571503|ref|YP_758183.1| tRNA modification GTPase TrmE [Maricaulis maris MCS10] gi|122314956|sp|Q0AKE8|MNME_MARMM RecName: Full=tRNA modification GTPase mnmE gi|114341965|gb|ABI67245.1| tRNA modification GTPase trmE [Maricaulis maris MCS10] Length = 438 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 20/135 (14%) Query: 18 DNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 D+ R G + L+GA NAGKS+L+N +IVT TTR IV ++ Sbjct: 204 DDGRRGERIRIGFSIVLIGAPNAGKSSLLNCLARRDAAIVTDIPGTTRDIVEVQLTLGGF 263 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +V DT G+ A D+ +R + +HAD+ V D+ + +E+ Sbjct: 264 PVVISDTAGLREAVDAIEAEGVRRALDRAEHADLRIGVADARSD---------EELVDLE 314 Query: 131 SRL----ILILNKID 141 RL +L+LNK+D Sbjct: 315 GRLTDGDLLVLNKLD 329 >gi|188993859|ref|YP_001905869.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. campestris str. B100] gi|205829191|sp|B0RMM4|MNME_XANCB RecName: Full=tRNA modification GTPase mnmE gi|167735619|emb|CAP53837.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. campestris] Length = 446 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 14/170 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G NAGKS+L+N G+ +IVT TTR + + ++ +DT G+ D+ Sbjct: 221 LIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDA 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + +R + + ++ AD+ +V+D+ R+ + D L + R + I NK D + Sbjct: 281 IEREGMRRARAELQRADLALIVLDA-RDPQA-ARDALGDAIDAVPRRLWIHNKCDLLAVA 338 Query: 147 RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 ++ IA VSA G G + L+ L L + S D Sbjct: 339 GPMDADAIA-----------VSAVTGQGLEH-LHTRLRELALGDGIESVD 376 >gi|54297453|ref|YP_123822.1| GTP-binding protein EngA [Legionella pneumophila str. Paris] gi|148359075|ref|YP_001250282.1| GTP-binding protein EngA [Legionella pneumophila str. Corby] gi|296107123|ref|YP_003618823.1| GTP-binding protein EngA [Legionella pneumophila 2300/99 Alcoy] gi|81822576|sp|Q5X522|DER_LEGPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225822|sp|A5IC36|DER_LEGPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|53751238|emb|CAH12649.1| hypothetical protein lpp1498 [Legionella pneumophila str. Paris] gi|148280848|gb|ABQ54936.1| GTP-binding protein EngA [Legionella pneumophila str. Corby] gi|295649024|gb|ADG24871.1| GTP-binding protein EngA [Legionella pneumophila 2300/99 Alcoy] Length = 462 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A G N GKSTL+NR +G + +V TTR + + ++ Q V +DT G+ Sbjct: 177 IAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRKS 236 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + IK A + L++D++ + +LL I + L++ +NK D Sbjct: 237 RIDEKIEKFSVIKTLQAIKEAHVCLLLLDANEGITDQDMNLLGFIIESGKALVIAVNKWD 296 Query: 142 CVKPERLLE-QAEIANKLVF--IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ++ + + ++E++ +L F K +SA G G + + A +S ++ Sbjct: 297 GLEEDHKEKIKSELSRRLHFANFAKIRFISALHGSGVGGLFKDINEAYHSAIQSFSTPKL 356 Query: 199 SDL 201 + L Sbjct: 357 TRL 359 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 9/177 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 LM R S + A+++ +VD L + + + K + ++ L++NK D + Sbjct: 64 DIEVDTLMSRQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNKTDGM 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + A+ + + I +SA+ G G +L + L P+ + +D Sbjct: 124 NED--IACADFQS--LGITDVHAISASHGGGISSLLEEI-----LEPFTTETHEATD 171 >gi|292806672|gb|ADE42466.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|51244709|ref|YP_064593.1| tRNA modification GTPase TrmE [Desulfotalea psychrophila LSv54] gi|50875746|emb|CAG35586.1| probable tRNA modification GTPase (TrmE) [Desulfotalea psychrophila LSv54] Length = 501 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 13/171 (7%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G N GKS+L+N + + ++VT TTR + +V + +DT GI Sbjct: 264 IAGRPNVGKSSLLNAVLQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGIRRQAGE 323 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 L I+ + I AD+V +VD R+L + +L ++IA + +I ++NK+D Sbjct: 324 VEALGIQRAKDLINSADLVLFMVDGSRQLDQSDLELYEDIAHKP--MIAVINKLDL---- 377 Query: 147 RLLEQAEIANKLV-FIEKT---FMVSATKGHGCDDVLNYLCSTLPLA--PW 191 L E A L+ F+ + +SA +G G + + + + + + PW Sbjct: 378 -LAEDGTAAAALLDFVPASVPRLAISAREGEGLEALKQAIFTVVTGSDTPW 427 >gi|299821633|ref|ZP_07053521.1| ribosome-associated GTPase EngA [Listeria grayi DSM 20601] gi|299817298|gb|EFI84534.1| ribosome-associated GTPase EngA [Listeria grayi DSM 20601] Length = 447 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + +DT GI + Sbjct: 16 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYNSAEWLGKDFNIIDTGGIDLS 75 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ + + RE + + + +I RS + ++L +NK+D Sbjct: 76 DEPFLDQIRAQAEIAIDEADVIIFITNG-REGVTDADEQVAKILYRSQKPVVLAINKVD- 133 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + Q L F E F +S + G G D+L+ + P Sbjct: 134 -NPE-MRTQIYDFYSLGFGE-PFPISGSHGLGLGDLLDEVRKHFP 175 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/142 (20%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+++N +G + IV+ TTR + + + + +DT G+ Sbjct: 190 SLIGRPNVGKSSILNALLGEERVIVSDIAGTTRDAIDTSYIYDDQEYIMIDTAGMRKRGK 249 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I+ +D+V +V+++ ++ + +++++NK D Sbjct: 250 VYEGTEKYSVLRAMRAIERSDVVLVVLNAEEGIREQDKKIAGYAHDAGRAIVIVVNKWDA 309 Query: 143 V-KPERLLE--QAEIANKLVFI 161 + K E+ ++ + +I + +F+ Sbjct: 310 IEKDEKTMKAFETDIREQFLFL 331 >gi|269127476|ref|YP_003300846.1| GTP-binding proten HflX [Thermomonospora curvata DSM 43183] gi|268312434|gb|ACY98808.1| GTP-binding proten HflX [Thermomonospora curvata DSM 43183] Length = 485 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 17/192 (8%) Query: 5 EITFFNEHKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 +I + ++ ++ N R VA+ G TNAGKS+L+NR GA V + T V Sbjct: 242 QIAEMAKTRETMRSNRRRNRIPSVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTV 301 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVV---DSHRELK 116 R + DT G + H+L+ R + + AD++ VV D+ E + Sbjct: 302 RRAQTPSGRPFTLADTVGFV--RHLPHQLVEAFRSTLEEVTQADLILHVVDGSDAEPEAQ 359 Query: 117 VN-IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 ++ + +L+EI ++++NK D P L A + + + +VSA G G Sbjct: 360 IDAVRQVLREIGADRVPELVVINKADAADP---LTLARLRRRE---PGSVVVSARTGAGI 413 Query: 176 DDVLNYLCSTLP 187 ++++ + + LP Sbjct: 414 EELMAAIEAELP 425 >gi|115605757|gb|ABJ15860.1| YphC [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|88855440|ref|ZP_01130104.1| GTP-binding protein [marine actinobacterium PHSC20C1] gi|88815347|gb|EAR25205.1| GTP-binding protein [marine actinobacterium PHSC20C1] Length = 516 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 15/175 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR A V + T + VR + DT G Sbjct: 296 SVAIAGYTNAGKSSLLNRLTRAGVLVENALFATLDATVRRSETADGRLFTLSDTVGFV-- 353 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKV---NIHDLLKEIAKRSSRLILIL 137 ++ H+L+ R + I AD++ VVD SH + + D++ E+ R I++ Sbjct: 354 RNLPHQLVEAFRSTLEEIGQADVIVHVVDASHPDPGAQLSTVRDVIGELGARDIPEIVVF 413 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 NK D ++ L + +F VSA G G D++ + + LP AP + Sbjct: 414 NKSDLADDDQRLVIRGLEPTGIF------VSARSGEGIDELNSRIAELLP-APEI 461 >gi|317484901|ref|ZP_07943790.1| ribosome-associated GTPase EngA [Bilophila wadsworthia 3_1_6] gi|316923839|gb|EFV45036.1| ribosome-associated GTPase EngA [Bilophila wadsworthia 3_1_6] Length = 452 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS+LVN +G IV+ TTR V F+DT G+ Sbjct: 191 LAMLGRPNAGKSSLVNAMIGEDRMIVSDVAGTTRDSVDIPFVSDGRACEFVDTAGVRRRT 250 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + + S T AD+ V+D+ + L+ + +R + ++++NKID Sbjct: 251 RITDTVERFSVNSSLKTTTKADVTLYVIDALEGVTAQDKRLIDLLDERKTPFMILVNKID 310 Query: 142 CV 143 V Sbjct: 311 LV 312 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 18/137 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 +AL+G N GKSTL NR + + +I + TR + G+V + + +DT G+ Sbjct: 5 IALLGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRSRSGRSFTLIDTGGV--T 62 Query: 84 KDSYHKL-------------MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 DS+H + +++ + + + A + CLVVD R+ + + L +R+ Sbjct: 63 LDSHHSVADGPEGLRGFEAEILQQTQAAMDEASVFCLVVDG-RDGLMPFDEHLASFVRRA 121 Query: 131 SR-LILILNKIDCVKPE 146 + +L++NK+D ++ E Sbjct: 122 GKPTLLVVNKVDGMEHE 138 >gi|282880854|ref|ZP_06289547.1| ribosome-associated GTPase EngA [Prevotella timonensis CRIS 5C-B1] gi|281305236|gb|EFA97303.1| ribosome-associated GTPase EngA [Prevotella timonensis CRIS 5C-B1] Length = 437 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 9/125 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR ++ +IV+ TTR G S + +DT G + Sbjct: 2 ANLVAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRL--ILI 136 N+ D + + + + AD+V VVD +K + D ++A+ R ++L IL+ Sbjct: 62 VNSDDIFEDAIRKQVVVATEEADLVLFVVD----VKNGLTDWDADVAQILRQTKLPVILV 117 Query: 137 LNKID 141 NK+D Sbjct: 118 ANKVD 122 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A+VG N GKS+++N F+G +IVT TTR + + +DT GI Sbjct: 179 AVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRKNK 238 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + S +I+++D+ L++D+ R ++ ++ + I + + L++++NK D Sbjct: 239 VTEDLEFYSVMRSIHSIENSDVCILMLDATRGIESQDMNIFQLIQRNNKSLVVVVNKWDL 298 Query: 143 VK 144 V+ Sbjct: 299 VE 300 >gi|266625814|ref|ZP_06118749.1| GTP-binding protein HflX [Clostridium hathewayi DSM 13479] gi|288862283|gb|EFC94581.1| GTP-binding protein HflX [Clostridium hathewayi DSM 13479] Length = 214 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 18/190 (9%) Query: 4 GEITFFNEHKDFV-QDNSR--SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 E+ H+D Q +R + A+VG TNAGKSTL+N A + T Sbjct: 34 AELEDVKRHRDVARQQRTRNHTPVAAIVGYTNAGKSTLLNTLTDAGILAEDKLFATLDPT 93 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKV 117 R + QI+ DT G + H L+ + + K++DI+ VVD S+ ++ + Sbjct: 94 TRNLELPGGEQILLTDTVGFI--RKLPHNLIEAFKSTLEEAKYSDIILHVVDCSNPQMDM 151 Query: 118 N---IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +++ LK++ +I + NKID R+ + + + +SA G G Sbjct: 152 QMYVVYETLKDLGVHDKEVITVFNKIDAAGEMRI-------PRDLSSDYQVKISAKTGEG 204 Query: 175 CDDVLNYLCS 184 D++LN L S Sbjct: 205 LDELLNLLES 214 >gi|262278041|ref|ZP_06055829.1| small GTP-binding protein [alpha proteobacterium HIMB114] gi|262223795|gb|EEY74259.1| small GTP-binding protein [alpha proteobacterium HIMB114] Length = 141 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ---IVFLDTPGIF 81 V+++G N GKST+ N+ +G+ +S V+ TT V I+S KE + I +D G+ Sbjct: 7 VSIIGKPNVGKSTIFNKLLGSNISTVSEISGTT---VYPIISNKEYKNLNINLIDLGGLK 63 Query: 82 NAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 S+ KL+ + + +K D+V V+D+ E+ N L K + + +I+I+N Sbjct: 64 KKSKSHDDKQKLITSETLNQLKKTDLVFFVLDASDEITKNDKQLFKLVLNKLKDVIVIVN 123 Query: 139 KIDCVK 144 K D +K Sbjct: 124 KTDLIK 129 >gi|319406081|emb|CBI79711.1| GTP-binding protein [Bartonella sp. AR 15-3] Length = 477 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 30/196 (15%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V + TR R I S K + F +DT G+ Sbjct: 4 TIAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRD--RRIHSAKFQDLHFNVIDTAGL- 60 Query: 82 NAKDSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 K H L R+ T I AD++ V+D+ + + D I K ++L+ N Sbjct: 61 -EKSDNHTLEGRMRSQTKIAIAEADLILFVLDAKSGITPSDLDFSSLIRKSGKPIVLVAN 119 Query: 139 KIDCVKPERLLEQAEIANKL----VFIEKTFMVSATKGHGCDDVLNYLCSTLPL------ 188 K + +A I + + + + ++SA G G D+ + + + + Sbjct: 120 KSES--------KAAIGGEYEAWSLGLGEPCLISAEHGQGLSDLRDAIVAAIGTDKIFNL 171 Query: 189 ---APWVYSADQISDL 201 VY+A Q+S + Sbjct: 172 RREKEKVYTAAQVSSI 187 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 7/138 (5%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 +D V D ++ +A+VG N GKSTL+N +G + + TR V + Sbjct: 196 EEDSVYDEKKTIRIAIVGRPNTGKSTLINSMLGQDRLLTGSEAGITRDSVSVDWEWNNRR 255 Query: 72 IVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIA 127 I DT G+ ++ +L + S I+ A++V +V D+ + DL + ++ Sbjct: 256 IKLFDTAGLRRKSKVQEKLERLSVMDSLRAIRFAEVVVIVFDATASFEK--QDLQIADLV 313 Query: 128 KRSSRL-ILILNKIDCVK 144 R R+ I+ NK D ++ Sbjct: 314 IREGRVPIIAFNKWDLIE 331 >gi|205829164|sp|Q6APY7|MNME_DESPS RecName: Full=tRNA modification GTPase mnmE Length = 467 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 11/154 (7%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G N GKS+L+N + + ++VT TTR + +V + +DT GI Sbjct: 230 IAGRPNVGKSSLLNAVLQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGIRRQAGE 289 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 L I+ + I AD+V +VD R+L + +L ++IA + +I ++NK+D Sbjct: 290 VEALGIQRAKDLINSADLVLFMVDGSRQLDQSDLELYEDIAHKP--MIAVINKLDL---- 343 Query: 147 RLLEQAEIANKLV-FIEKT---FMVSATKGHGCD 176 L E A L+ F+ + +SA +G G + Sbjct: 344 -LAEDGTAAAALLDFVPASVPRLAISAREGEGLE 376 >gi|122700731|emb|CAL87954.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|24375414|ref|NP_719457.1| GTP-binding protein [Shewanella oneidensis MR-1] gi|24350252|gb|AAN56901.1|AE015824_12 GTP-binding protein [Shewanella oneidensis MR-1] Length = 394 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N+GKS+L+N G ++SIV+ K TT ++ + + + F DT GI + Sbjct: 5 IALVGRRNSGKSSLLNMLAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGI-DD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + +D+ LVVD ++ L+ EI + ++++ NK D Sbjct: 64 EGTLGAMRVSATRRVLFRSDMALLVVDEQGLCPSDMA-LIDEIRQLQMPILMVFNKADIC 122 Query: 144 KPE 146 P+ Sbjct: 123 TPK 125 >gi|87125615|ref|ZP_01081460.1| putative GTP-binding protein [Synechococcus sp. RS9917] gi|86166915|gb|EAQ68177.1| putative GTP-binding protein [Synechococcus sp. RS9917] Length = 455 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G ++E ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKLV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR S + A + ++VD + + + + + ++ +L +NK Sbjct: 64 DDDSEFLPEIREQASLAMAEASVAVVIVDGQQGVTAADESIAEWLRSQACPTLLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C PE+ L A L E + +SA G G ++L+ + + LP Sbjct: 122 CESPEQGLAMAAEFWGLGLGEP-YPISAIHGAGTGELLDQVLTFLP 166 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 8/185 (4%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 + ++ F KD D + +A++G N GKS+L+N G +IV+ TTR + Sbjct: 158 LDQVLTFLPPKDQEGDEAEPIQMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDTID 217 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 + +DT GI + ++ I S+ I+ +D+ LV+D+ + Sbjct: 218 TRLERNGLSWRLVDTAGIRRRRSVHYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHG 174 L I + ++++NK D V+ + A E+ KL F++ M+ SA G Sbjct: 278 QRLAGRIEEEGRACVVVVNKWDAVEKDSHTMPAMEKELRAKLYFLDWAPMLFTSALTGQR 337 Query: 175 CDDVL 179 D + Sbjct: 338 VDSIF 342 >gi|170740822|ref|YP_001769477.1| GTP-binding protein EngA [Methylobacterium sp. 4-46] gi|168195096|gb|ACA17043.1| small GTP-binding protein [Methylobacterium sp. 4-46] Length = 446 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V + TR G + +DT G+ A Sbjct: 5 IVAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEARLGHLRFTIIDTAGLEEA 64 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +S M + + I AD V VVD+ L + E+ +R+ + +IL+ NK + Sbjct: 65 DAESLAGRMRAQTEAAIAEADAVLFVVDARAGL-LPADQPFAELVRRADKPVILLANKAE 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + VSA G G +++ L LP Sbjct: 124 GGA----GLAGAYEAFGLGLGDPVPVSAEHGEGMGQLIDALADILP 165 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 18/196 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG NAGKSTL+NR +G +V + TR + + +I DT G+ Sbjct: 181 VAIVGRPNAGKSTLINRMLGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMRRRA 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D KL + ++ A++V +++D+ + ++ + + L++ LNK D Sbjct: 241 RVDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQDLTIVDLVEQEGRALVIGLNKWD 300 Query: 142 CV--KPERLLEQAEIANKL---VFIEKTFMVSATKGHGCD----------DVLNYLCSTL 186 V +P L E E A +L V +S G G D DV N T Sbjct: 301 LVADQPGLLKELREKAARLLPQVRGAPIVPLSGLAGEGIDRLMQGVVSASDVWNRRVPTA 360 Query: 187 PLAPWVYSADQISDLP 202 + W+ A Q + P Sbjct: 361 RINQWLSEAVQANPPP 376 >gi|122700793|emb|CAL87985.1| GTPase [Helicobacter pylori] gi|122700897|emb|CAL88037.1| GTPase [Helicobacter pylori] gi|122702145|emb|CAL88263.1| GTPase [Helicobacter pylori] gi|122702403|emb|CAL88392.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|92115738|ref|YP_575467.1| tRNA modification GTPase TrmE [Nitrobacter hamburgensis X14] gi|123265484|sp|Q1QRZ0|MNME_NITHX RecName: Full=tRNA modification GTPase mnmE gi|91798632|gb|ABE61007.1| tRNA modification GTPase trmE [Nitrobacter hamburgensis X14] Length = 457 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 8/164 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G NAGKSTL+NR + +IV+ TTR ++ + + +DT GI Sbjct: 220 TVAIAGPPNAGKSTLLNRLARREAAIVSPYAGTTRDVIEVHLDLDGYPVTLIDTAGIRET 279 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D + +R + AD+V + D + + + I + L L+ NKID Sbjct: 280 DDPVEQEGVRRARDRAASADLVLWLADDDNGVGPS-----QTIGEGGVPLWLVRNKIDVS 334 Query: 144 KPER---LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 E Q E + + F +SA++G G D+++ L + Sbjct: 335 GAESDGANPRQLEAKPGQGILPRHFWISASRGDGVDELVAALTA 378 >gi|323336238|gb|EGA77509.1| Mss1p [Saccharomyces cerevisiae Vin13] Length = 526 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 + L+GA N GKS+LVN +SIV+ TTR + +++ +++ DT GI + Sbjct: 277 LVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKS 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 D L I + +D+ +VD K+ D+L ++ ++ R+I+++NK Sbjct: 337 SDKIEMLGIXRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIVVNKS 396 Query: 141 DCVKPERLLEQAEIANKL 158 D V + E ++ NKL Sbjct: 397 DLVSDD---EMTKVLNKL 411 >gi|170017042|ref|YP_001727961.1| GTP-binding protein engA [Leuconostoc citreum KM20] gi|238688961|sp|B1MYB5|DER_LEUCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169803899|gb|ACA82517.1| GTP-binding protein engA [Leuconostoc citreum KM20] Length = 437 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G +++IV K TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRMAGERIAIVEDKPGVTRDRLYAPAEWLNYEFRMIDTGGIELG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + I AD++ +V + + K + K +IL +NK+D Sbjct: 65 DEPFLAEIRAQVELAIDEADVIVMVASGREGVTAADEVVAKMLYKTDKPVILAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + Q + + F VS + G G D+L+ + P Sbjct: 123 NPE--MRQDIYDFYSLGLGDLFPVSGSHGLGLGDLLDAVVKHFP 164 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG-IVSEKESQIVFLDTPGIFNAK 84 +++G N GKS++VN +G IV+ TTR + V+ + + + +DT G+ Sbjct: 179 SIIGRPNVGKSSIVNAMLGEDRVIVSDIEGTTRDAIDSRFVTAEGDEFIMVDTAGMRKRG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I +++++ +V+D+ ++ + +I+I+NK D Sbjct: 239 KVYENTEKYSVMRALKAIDNSNVILMVLDAEAGIREQDKHVAGFAHDAGRAMIIIVNKWD 298 Query: 142 CVK 144 ++ Sbjct: 299 AIE 301 >gi|122702125|emb|CAL88253.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|319901975|ref|YP_004161703.1| iron-only hydrogenase maturation protein HydF [Bacteroides helcogenes P 36-108] gi|319417006|gb|ADV44117.1| iron-only hydrogenase maturation protein HydF [Bacteroides helcogenes P 36-108] Length = 402 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 9/179 (5%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKE 69 E DF N+ +A+ G N+GKS+LVN G ++V+ TT +++ + Sbjct: 4 ETSDFKTPNANRLHIAIFGRRNSGKSSLVNALTGQDTALVSSVPGTTTDPVMKAMEVHLL 63 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 +F+DTPG + ++ ++ + + ++ DI L+ + L+ +L E R Sbjct: 64 GSCLFIDTPGFDDDENKLGEMRVERTLQIVERTDIALLLCEDGGILEKEWFGMLTE---R 120 Query: 130 SSRLILILNKIDC-VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++ +LNK D +RL E +F + +VSA K G ++ + LP Sbjct: 121 KIPIVPVLNKFDLRTDVDRLASDIE----RIFGQYPVIVSAQKLIGIQNIFRAILEKLP 175 >gi|167627608|ref|YP_001678108.1| tRNA modification GTPase TrmE [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189036203|sp|B0TYD1|MNME_FRAP2 RecName: Full=tRNA modification GTPase mnmE gi|167597609|gb|ABZ87607.1| GTPase of unknown function [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 450 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ ++ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRSSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILIL---NKI 140 I+ + I+ AD + V D + +V +I D++ E + + I I NKI Sbjct: 279 IESEGIKRAIKKIQEADQILFVTDDYTNSQVKFSDIKDIIPEFYHQIPKDIDITYVHNKI 338 Query: 141 DCVK 144 D +K Sbjct: 339 DLLK 342 >gi|126730104|ref|ZP_01745916.1| tRNA modification GTPase [Sagittula stellata E-37] gi|126709484|gb|EBA08538.1| tRNA modification GTPase [Sagittula stellata E-37] Length = 427 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 6/148 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKSTL+N G +I + TTR ++ + + FLDT G+ + Sbjct: 216 VAIVGPPNAGKSTLLNNLAGRDAAITSEIAGTTRDVIEVRMDVGGLPVTFLDTAGLRETE 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD--SHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D +L I L+ + AD+ +V+ E+ V D+++ S L L+ Sbjct: 276 DPVERLGIDLARRRAEAADLRVHLVERGGQPEIGVRSGDVVRWAKDDSGSLDDGLSGRTG 335 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSAT 170 R+L +EIA +L +E+T +S T Sbjct: 336 YGVARVL--SEIAEEL--LERTAGMSLT 359 >gi|307172923|gb|EFN64090.1| tRNA modification GTPase GTPBP3, mitochondrial [Camponotus floridanus] Length = 510 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 20/145 (13%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NAKD 85 +VG N GKS+L+N V +IVT TTR ++ + ++ DT GI N KD Sbjct: 263 IVGEPNVGKSSLLNHLVQRNAAIVTPVAGTTRDVIELSANISGYPVLIADTAGITNNTKD 322 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHREL---------------KVNIHDLLKEIAKRS 130 IR + S ++AD V +V+D+ + + + I++LL ++ K Sbjct: 323 IVEVEGIRRARSYAENADFVIVVMDAFKCVISEMTYEDYLRGYLSSLGIYELLTKMGK-- 380 Query: 131 SRLILILNKIDCVKPE--RLLEQAE 153 R I+I+NK D +K E R L+ E Sbjct: 381 ERFIVIMNKRDLLKAEDKRRLDDVE 405 >gi|254393241|ref|ZP_05008394.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] gi|294811807|ref|ZP_06770450.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] gi|197706881|gb|EDY52693.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] gi|294324406|gb|EFG06049.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] Length = 490 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 54 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 113 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ +++ + + ++L NK+D Sbjct: 114 VLGIDASVAAQAEYAIEAADAVVFVVDASVGATDTDEAVVRLLRRAGKPVVLCANKVDG- 172 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P + A + + + + + VSA G G D+L+ + LP AP Sbjct: 173 -PSGEADAAALWS--LGLGEPHPVSALHGRGTGDMLDAVLEALPEAP 216 >gi|327192536|gb|EGE59488.1| GTP-binding protein [Rhizobium etli CNPAF512] Length = 217 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 23/187 (12%) Query: 25 VALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQI---VFLDT 77 VA G +N GKS+L+N VG A+ S + Q V S + + +D Sbjct: 33 VAFAGRSNVGKSSLINALVGQKGLARTSNTPGRTQELNYFVPDGYSGEGGDLPPMAIVDM 92 Query: 78 PGIFNAK------DSYHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 PG A+ D + KL+ +T+K V +++DS +K N D+L + K Sbjct: 93 PGYGYAQAPKEQVDKWTKLVFDYLRGRATLKR---VYVLIDSRHGIKKNDEDVLTLLDKA 149 Query: 130 SSRLILILNKIDCVK----PERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + L+L K D +K P+ L E A+ I + S+ KG G DD+ + Sbjct: 150 AVSYQLVLTKTDKIKAPAVPKLLAETADKIRKRPAAYPAVLSTSSEKGDGLDDLRQAIAQ 209 Query: 185 TLPLAPW 191 T+ + W Sbjct: 210 TVGIENW 216 >gi|303284441|ref|XP_003061511.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456841|gb|EEH54141.1| predicted protein [Micromonas pusilla CCMP1545] Length = 470 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 16/178 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT------P 78 VA+VG N GKS L NR G K +IV + TR + +S+ + +DT P Sbjct: 6 VAIVGRPNVGKSALFNRLTGTKRAIVYDQPGITRDRMYVRAFWGDSEFMMVDTGGLESLP 65 Query: 79 GIFNAKDSYHKL--------MIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 G A S + MI + ++ A + +VVD L D+ + I K Sbjct: 66 GNPGAAPSVDAVGGFEILPGMIESQAALAVREAASLVMVVDGQTGLTTADVDIYRWIRKN 125 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L+L C R EQ L + VSA G G D+++ LC+TLP Sbjct: 126 HADKPLVLAVNKCESTTRGEEQVLDFWSLGGVTP-LAVSAISGTGTGDMMDQLCATLP 182 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 16/131 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIFN- 82 VA+VG N GKS+L+N+ G +IV+ TTR + V++ + ++ +DT GI Sbjct: 202 VAIVGRPNVGKSSLLNQLSGDARAIVSDHSGTTRDTIDSDVTDADGNKFTLIDTAGIRRR 261 Query: 83 -----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-----R 132 KD +L + + ++ A++V LV+D+ E + D + +A+R++ Sbjct: 262 TAVAAGKDKPEELSVGRALQAMRRAEVVVLVIDA--EEGPSQQDFV--LAERAALTEGCA 317 Query: 133 LILILNKIDCV 143 L+L +NK D + Sbjct: 318 LVLCVNKWDVI 328 >gi|295133679|ref|YP_003584355.1| tRNA modification GTPase TrmE [Zunongwangia profunda SM-A87] gi|294981694|gb|ADF52159.1| tRNA modification GTPase TrmE [Zunongwangia profunda SM-A87] Length = 480 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 49/93 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR ++ ++ F+DT GI K Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSEIAGTTRDVIEDELAIGGVGFRFIDTAGIRETK 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV 117 D + I+ ++ I A +V + D+ R K+ Sbjct: 284 DVVESIGIKKTFEKIGQAQVVIYLFDTSRLSKI 316 >gi|294102070|ref|YP_003553928.1| ribosome-associated GTPase EngA [Aminobacterium colombiense DSM 12261] gi|293617050|gb|ADE57204.1| ribosome-associated GTPase EngA [Aminobacterium colombiense DSM 12261] Length = 436 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 V++VG N GKS+LVN G+ +V+ TTR ++ KE + F+DT G+ Sbjct: 177 VSIVGRPNVGKSSLVNALAGSDRVLVSDIPGTTRDATDTVIEMKEGKFRFIDTAGLRKKS 236 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++ Y+ + L + +D+ LV+D+ + ++ ++ LIL++NK Sbjct: 237 RIDSDIEYYSFVRTL--QAVDRSDVALLVMDASEPTTDQDKKMAAQVIEKGKGLILLINK 294 Query: 140 IDCVK 144 D ++ Sbjct: 295 WDTLE 299 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 11/168 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+L NR +G + +IV TR + G K Q +DT G+ Sbjct: 3 IIAIVGRPNVGKSSLFNRILGRREAIVDDMPGVTRDRIYGETEWKGRQFYIVDTGGLL-V 61 Query: 84 KDSYHKLM--IRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D H L+ IR + I+ + ++ V+D D+ + + +I++ NK+ Sbjct: 62 RDE-HPLVEGIRKQATLAIEESHVILFVIDGFNGPNWMDEDVAHILRRSGKPVIVVANKL 120 Query: 141 -DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + +R+ + + E +SA DD+++ S LP Sbjct: 121 DDGIHEDRVYDAYSLG-----FEHVVGISALHKRYIDDLMDMAVSLLP 163 >gi|259148601|emb|CAY81846.1| Mss1p [Saccharomyces cerevisiae EC1118] Length = 526 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 + L+GA N GKS+LVN +SIV+ TTR + +++ +++ DT GI + Sbjct: 277 LVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKS 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 D L I + +D+ +VD K+ D+L ++ ++ R+I+++NK Sbjct: 337 SDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIVVNKS 396 Query: 141 DCVKPERLLEQAEIANKL 158 D V + E ++ NKL Sbjct: 397 DLVSDD---EMTKVLNKL 411 >gi|160893538|ref|ZP_02074323.1| hypothetical protein CLOL250_01090 [Clostridium sp. L2-50] gi|156864933|gb|EDO58364.1| hypothetical protein CLOL250_01090 [Clostridium sp. L2-50] Length = 437 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 23/174 (13%) Query: 20 SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +R+G V++VG TNAGKSTL+N+ GA V T R V Q++F DT Sbjct: 208 NRTGIPVVSIVGYTNAGKSTLLNKLTGAGVLEEDKLFATLDPATRNAVLPAGQQVLFTDT 267 Query: 78 PGIFNAKDSYHKLMIRLSWSTI---KHADIVCLVVDS-----HRELKVNIHDLLKEI--- 126 G F K +H ++ ST+ K++D++ VVD+ R ++ ++ L+++ Sbjct: 268 VG-FIRKLPHH--LVEAFKSTLEEAKYSDVILHVVDASDPNWDRNME-TVYATLRQLNVD 323 Query: 127 AKRSSRLILILNKIDCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVL 179 ++ +I + NKID +L E +I+ K + ++ +SA G G DD+L Sbjct: 324 EEKDHPIITVFNKID-----KLPEGGDISMIKDLRADRMVYLSAKTGAGIDDLL 372 >gi|94971366|ref|YP_593414.1| GTP-binding protein, HSR1-related [Candidatus Koribacter versatilis Ellin345] gi|94553416|gb|ABF43340.1| GTP-binding protein, HSR1-related protein [Candidatus Koribacter versatilis Ellin345] Length = 451 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 11/169 (6%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +N VALVG TNAGKSTL N A V + T +RG++ + Q++ DT Sbjct: 228 ENVPVAVVALVGYTNAGKSTLFNALTKAGVYASSKMFATLDPTLRGVMLPSKRQVLLSDT 287 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRL 133 G + R + ++ A ++ V D+ E + + D+L E+ + Sbjct: 288 VGFIRNLPTTLVSAFRATLEEVQRAALLLHVADATSPVALEQQRQVEDVLGELEVQDKPQ 347 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 I ++NKID LL ++ A L+ K VSA G G + +L+ + Sbjct: 348 IHVMNKID------LLATSKRA-ALINSGKVVHVSAKSGLGMEALLHAI 389 >gi|6323665|ref|NP_013736.1| Mss1p [Saccharomyces cerevisiae S288c] gi|1709142|sp|P32559|MSS1_YEAST RecName: Full=tRNA modification GTPase MSS1, mitochondrial; Flags: Precursor gi|798934|emb|CAA89126.1| Mss1p [Saccharomyces cerevisiae] gi|110610140|gb|ABG77646.1| mitochondrial GTP-binding protein [Saccharomyces cerevisiae] gi|190408262|gb|EDV11527.1| GTPase MSS1, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] gi|285814026|tpg|DAA09921.1| TPA: Mss1p [Saccharomyces cerevisiae S288c] gi|323332012|gb|EGA73423.1| Mss1p [Saccharomyces cerevisiae AWRI796] Length = 526 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 + L+GA N GKS+LVN +SIV+ TTR + +++ +++ DT GI + Sbjct: 277 LVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKS 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 D L I + +D+ +VD K+ D+L ++ ++ R+I+++NK Sbjct: 337 SDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIVVNKS 396 Query: 141 DCVKPERLLEQAEIANKL 158 D V + E ++ NKL Sbjct: 397 DLVSDD---EMTKVLNKL 411 >gi|309810373|ref|ZP_07704208.1| ribosome biogenesis GTPase Der [Dermacoccus sp. Ellin185] gi|308435686|gb|EFP59483.1| ribosome biogenesis GTPase Der [Dermacoccus sp. Ellin185] Length = 506 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 71 VVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVAYDAEWVGRRFTLVDTGGWEVD 130 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + I+ AD V VVD+ ++K + + ++LI NK+D Sbjct: 131 ASGIHLRVAEQAEVAIELADAVMFVVDATVGATDTDEAVVKLLRRSKKPVVLIANKVDDN 190 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E A + L E + VS+ G G D L+ + LP Sbjct: 191 RSE---ADAAMLWSLGLGE-PYPVSSLHGRGTGDALDAVIDLLP 230 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 12/143 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VAL+G N GKS+L+N+ G + +V + TTR V + F+DT GI Sbjct: 247 VALLGRPNVGKSSLLNKLAGEERVVVDNVAGTTRDPVDEYIELGGKTWRFVDTAGIRRRV 306 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++D+ + + +++++ L++ N Sbjct: 307 HQTRGADFYASLRTQ---TALEKAEVAVVLIDAEQSIAEQDVRVVQQVIDAGRALVIAYN 363 Query: 139 KIDCVKPER--LLEQAEIANKLV 159 K D + ER LE+ EI +LV Sbjct: 364 KWDTLDEERRYYLEK-EIERELV 385 >gi|206603829|gb|EDZ40309.1| GTP-binding protein (EngA) [Leptospirillum sp. Group II '5-way CG'] Length = 469 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 +A++G N GKSTL NR + + +IV + TR +G + K ++V DT GI Sbjct: 6 LIAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLV--DTGGIL 63 Query: 82 NAKDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D IR + ++ AD V V+D D++ I + + +NK+ Sbjct: 64 FGDDHPLGESIRKQALFALEEADAVIYVMDGREGYLPVDADVIGRIRRSGKPSVFAVNKV 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D VK E +L + +SA G D +L+ +P Sbjct: 124 DTVKTEEVLADFHRHG----VAPLIGISAAHGRNVDALLDPFLDLMP 166 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 13/186 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA++G N GKSTLVNR +G + + + TTR + +V+ ++ F+DT G+ Sbjct: 202 VAVIGRPNVGKSTLVNRLLGEERLVTSPIPGTTRDAIDTLVTFRDKTYHFVDTAGLRKKG 261 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A+ S IR I ++I +++ + L +++++ LIL NK Sbjct: 262 KVAEASELYAQIRTD-RAILESEIAVVLLSAEDGLTDGDLRIIRQVIDHRRGLILAWNKW 320 Query: 141 DCVK---PERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D +K P + ++ + F+ F SA G + ++ + + W ++ Sbjct: 321 DTLKSSGPSQAPPFRDVRERYPFLSFAPMFGCSARTGFHVSQLFGHIAT---VRDWYFTR 377 Query: 196 DQISDL 201 S+L Sbjct: 378 ITTSEL 383 >gi|209542663|ref|YP_002274892.1| GTP-binding proten HflX [Gluconacetobacter diazotrophicus PAl 5] gi|209530340|gb|ACI50277.1| GTP-binding proten HflX [Gluconacetobacter diazotrophicus PAl 5] Length = 436 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 20/174 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N GA V T +RGI +I+ DT G + Sbjct: 211 VVALVGYTNAGKSTLFNALTGATVFAQDQLFATLDPTMRGIRLPSGRRIILSDTVGFISD 270 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE---LKVNIHDLLKEIAKRSS-------R 132 + R + + AD++ V D SH + + ++ D+L+ +A + R Sbjct: 271 LPTELIAAFRATLEEVAEADVILHVRDISHPDSAAQRADVEDVLEGMAGSGTLEDDWRRR 330 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +I + NK D + + + + + ++SA G G D+L + S L Sbjct: 331 VIEVQNKADLIGGR---------DAVPPRKGSVVISAITGEGLPDLLAAIDSRL 375 >gi|134096615|ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans] gi|205829158|sp|A4GAN2|MNME_HERAR RecName: Full=tRNA modification GTPase mnmE gi|133740518|emb|CAL63569.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans] Length = 466 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G N GKS+L+N G+ V+IVT TTR V + + + +DT GI +A Sbjct: 227 IVLAGQPNVGKSSLLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRDAA 286 Query: 85 DS---YHKLMIRLSWSTIKHADIVCLVVDSHR 113 D+ ++ I +W+ ++ AD++ ++D+ R Sbjct: 287 DAGDEVERIGIERTWAAVQTADVIVHMLDASR 318 >gi|56965874|ref|YP_177608.1| tRNA modification GTPase TrmE [Bacillus clausii KSM-K16] gi|81821939|sp|Q5WAG3|MNME_BACSK RecName: Full=tRNA modification GTPase mnmE gi|56912120|dbj|BAD66648.1| tRNA modification GTPase [Bacillus clausii KSM-K16] Length = 458 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V +IVT TTR + V+ + + +DT G Sbjct: 218 REGLATAIIGRPNVGKSSLMNSLVHEAKAIVTDIPGTTRDTLEEYVNVRGVPLRLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ +L L + A + +++I+NK Sbjct: 278 IRETEDIVERIGVERSRQALKEADLILLVLNYAEKLSKEDEALFE--AVKGLDVVVIVNK 335 Query: 140 ID 141 ID Sbjct: 336 ID 337 >gi|323353023|gb|EGA85323.1| Mss1p [Saccharomyces cerevisiae VL3] Length = 526 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 + L+GA N GKS+LVN +SIV+ TTR + +++ +++ DT GI + Sbjct: 277 LVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKS 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 D L I + +D+ +VD K+ D+L ++ ++ R+I+++NK Sbjct: 337 SDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIVVNKS 396 Query: 141 DCVKPERLLEQAEIANKL 158 D V + E ++ NKL Sbjct: 397 DLVSDD---EMTKVLNKL 411 >gi|317452839|emb|CBL87855.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|153840641|ref|ZP_01993308.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] gi|149745697|gb|EDM56827.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] Length = 109 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL NR + ++V TR G ++E + + +DT GI Sbjct: 4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGGIDG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 ++ M S + I AD+V +VD + + + D K++ K Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFLVDGRQTVDAALADAEKQMTK 109 >gi|52841771|ref|YP_095570.1| GTP-binding protein EngA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81823403|sp|Q5ZV99|DER_LEGPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52628882|gb|AAU27623.1| GTP-binding protein EngA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 462 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A G N GKSTL+NR +G + +V TTR + + ++ Q V +DT G+ Sbjct: 177 IAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRKS 236 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + IK A + L++D++ + +LL I + L++ +NK D Sbjct: 237 RIDEKIEKFSVIKTLQAIKEAHVCLLLLDANEGITDQDMNLLGFIIESGKALVIAVNKWD 296 Query: 142 CVKPERLLE-QAEIANKLVF--IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ++ + + ++E++ +L F K +SA G G + + A +S ++ Sbjct: 297 GLEEDHKEKIKSELSRRLHFANFAKIRFISALHGSGVGGLFKDINEAYHSAIQSFSTPKL 356 Query: 199 SDL 201 + L Sbjct: 357 TRL 359 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 9/177 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 LM R S + A+++ +VD L + + + K + ++ L++NK D + Sbjct: 64 DIEVDTLMSRQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKFNKKVHLVVNKTDGM 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 + + A+ + + I +SA+ G G +L + L P+ + +D Sbjct: 124 NED--IACADFQS--LGITDIHAISASHGGGISSLLEEI-----LEPFTTETHEATD 171 >gi|327189207|gb|EGE56387.1| GTP-binding protein [Rhizobium etli CNPAF512] Length = 473 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V TR G +DT G+ A Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEEA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++S M + + I AD+ VVD+ L L + + +R ++L+ NK Sbjct: 64 DEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 22/191 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E ++ + D+++ VA+VG NAGKSTL+NRF+G + + TR + + Sbjct: 190 GEDEEPIYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 249 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I DT G+ + KL + + I+ A+ V +V D+ + ++ + Sbjct: 250 RTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLV 309 Query: 127 AKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + +L NK D + K +RLL QA + +S G G Sbjct: 310 LREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGI-------RAVPISGQTGWG 362 Query: 175 CDDVLNYLCST 185 D ++ + T Sbjct: 363 LDKLMQSIIDT 373 >gi|326336190|ref|ZP_08202362.1| ribosome-associated GTPase EngA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691699|gb|EGD33666.1| ribosome-associated GTPase EngA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 434 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 5/167 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR V + +IV TR G +DT G + Sbjct: 2 SAIVAIVGRPNVGKSTFFNRLVQRREAIVDSISGVTRDRHYGKTDWNGRDFSVIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + K + + I+ AD + + D + ++ + + + L +NK+ Sbjct: 62 AGGDDVFQKEIDKQVNLAIEEADAIIFLTDVESGIMSTDEEIAQLLRRSKKPTFLAVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D K R ++ E + E+ F +S+ G G ++L+ + LP Sbjct: 122 DNTK--RAMDANEFY--ALGFEELFPISSVNGSGTGELLDAVVKVLP 164 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G + IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRKAK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I+H+D+ L+VD+ R + ++ + +++++NK D Sbjct: 238 VKEDLEFYSVMRSVRAIEHSDVCLLLVDATRGFEGQDANIFWLAQRNKKGVVILVNKWDL 297 Query: 143 VK 144 V+ Sbjct: 298 VE 299 >gi|256273535|gb|EEU08469.1| Mss1p [Saccharomyces cerevisiae JAY291] Length = 526 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 + L+GA N GKS+LVN +SIV+ TTR + +++ +++ DT GI + Sbjct: 277 LVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKS 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 D L I + +D+ +VD K+ D+L ++ ++ R+I+++NK Sbjct: 337 SDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIVVNKS 396 Query: 141 DCVKPERLLEQAEIANKL 158 D V + E ++ NKL Sbjct: 397 DLVSDD---EMTKVLNKL 411 >gi|157964906|ref|YP_001499730.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5] gi|166991114|sp|A8F2P7|MNME_RICM5 RecName: Full=tRNA modification GTPase mnmE gi|157844682|gb|ABV85183.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5] Length = 445 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 12/148 (8%) Query: 10 NEHKDFVQDNS-----RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 N +++ DN RSG +A++G N GKS+L+N + ++IV++ TTR I+ G Sbjct: 197 NTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEG 256 Query: 64 IVSEKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-ELKVNIHD 121 + I+ DT GI + D + I+ + ++ K ADI ++ D+ + + +N D Sbjct: 257 HLDIGGYPIILQDTAGIGEESSDIIEQEGIKRAINSAKTADIKIIMFDAEKLDSSIN-ED 315 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLL 149 ++ I + + I I+NKID ++ ++ Sbjct: 316 IINLIDENT---ITIINKIDLIEASKIF 340 >gi|313668681|ref|YP_004048965.1| GTP-binding protein [Neisseria lactamica ST-640] gi|313006143|emb|CBN87604.1| putative GTP-binding protein [Neisseria lactamica 020-06] Length = 485 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 8/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G + I TTR + I E+E + +DT Sbjct: 172 DAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 230 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 231 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 290 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + +NK D + ER + + +I KL F++ K +SA K HG D + + + + Sbjct: 291 VAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKEHGIDGLFDSIQAA 344 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD L Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGL 96 >gi|302035744|ref|YP_003796066.1| tRNA modification GTPase [Candidatus Nitrospira defluvii] gi|300603808|emb|CBK40140.1| tRNA modification GTPase [Candidatus Nitrospira defluvii] Length = 476 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 5/165 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 VA++G N GKS+L+N + + +IVT TTR ++ +V+ + DT GI Sbjct: 237 GAAVAILGRPNVGKSSLMNALLRSDRAIVTPIPGTTRDLLEEVVNIHGIPVRLFDTAGIR 296 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D IR S + AD+ +++DS + + + DLL ++R +L+LNK Sbjct: 297 TTDDPVETEGIRRSHLAWEDADLALILLDSSQPMLES--DLLLLRRSEAARALLVLNK-- 352 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 C P R+ ++ ++ F +SA G D + + + S L Sbjct: 353 CDLPSRISKE-DLTRVCPVSAGLFEISAKMHIGLDGLRDAISSRL 396 >gi|292806650|gb|ADE42455.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + + ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|21231170|ref|NP_637087.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768822|ref|YP_243584.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991937|ref|YP_001903947.1| GTP-binding protein, probable [Xanthomonas campestris pv. campestris str. B100] gi|21112810|gb|AAM41011.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574154|gb|AAY49564.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733697|emb|CAP51902.1| GTP-binding protein, probable [Xanthomonas campestris pv. campestris] Length = 439 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA T VR I S V DT G + Sbjct: 201 IALVGYTNAGKSTLFNALTGADAYAADQLFATLDPTVRRIALPGGS-AVLADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSH---RELKVN-IHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD++ +VD+ RE +++ + ++L+ + +L+ N Sbjct: 258 DLPHELVAAFRSTLSEARDADLLLHIVDAADPLREERIHQVDEVLQAVGAGDLPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID ++ + A+ + +SA G G +++ L L L Sbjct: 318 KIDKIEGAEVRHDAQDGIPDQARRERVWISARDGRGLEELQRALGHRLDL 367 >gi|294155882|ref|YP_003560266.1| GTP-binding protein [Mycoplasma crocodyli MP145] gi|291600022|gb|ADE19518.1| GTP-binding protein [Mycoplasma crocodyli MP145] Length = 434 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 6/156 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKST NR +G K+SIV + TR + + I +DT GI Sbjct: 5 IAIIGKPNVGKSTFFNRLIGKKISIVYDQPGVTRDRLYENIEWCGRVIKMIDTGGIEIEN 64 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + I AD++ + D E+ + ++ + K + ++I + NK++ Sbjct: 65 KPFQEQIQIQAKIAIDEADVIIFIFDGTSEITNDDLFIMNILRKSNKQIIAVANKLESN- 123 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + + + + +EK + +SA G G +VL+ Sbjct: 124 -----QDFDYSWYKLGVEKIYAISALHGEGVGEVLD 154 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G NAGKS+L+N SIV+ TTR V+ V + +DT GI Sbjct: 173 LSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKSTVQINGQKYNIIDTAGIMRKS 232 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + +++ AD+ ++VD+ ++ ++ + +I+++NK D Sbjct: 233 RLVESVDHYALMRAMNSLNEADLSLIIVDATSDISHFDSRIIGYALENQKPIIVVINKWD 292 Query: 142 CVKPE 146 V+ E Sbjct: 293 LVEKE 297 >gi|237785685|ref|YP_002906390.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM 44385] gi|237758597|gb|ACR17847.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM 44385] Length = 507 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 18/187 (9%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ +T E K +D+S + +A+ G TNAGKS+L+N GA V + T Sbjct: 259 ELRSMTTAREIKRDRRDSSTTPQIAIAGYTNAGKSSLINAITGAGVLVEDALFATLDPTT 318 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--- 118 R ++F DT G + R S + AD+V VVD + Sbjct: 319 RRAELADGRAVIFSDTVGFVRHLPTQLVEAFRSSLEEVASADLVLHVVDGSDPFPLKQIA 378 Query: 119 -IHDLLKEIAKRSSRL------ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATK 171 +H++L ++ R+SR I+++NKID P L + + +VF VSA Sbjct: 379 AVHEVLADV--RNSRAETMPPEIIVVNKIDQADPIVLAQLRHELDDVVF------VSAKT 430 Query: 172 GHGCDDV 178 G D++ Sbjct: 431 GENIDEL 437 >gi|190574024|ref|YP_001971869.1| GTP-binding protein EngA [Stenotrophomonas maltophilia K279a] gi|229463762|sp|B2FNR1|DER_STRMK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190011946|emb|CAQ45567.1| putative GTP-binding protein [Stenotrophomonas maltophilia K279a] Length = 465 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKST+ N + ++V + TR G+ ++++ + +DT GI Sbjct: 4 LVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVVDTGGIAG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + R + + AD++ VVD+ ++L + K S +L++NKID Sbjct: 64 EDEGLAGATTRQARAAAAEADLILFVVDAREGTSALDDEILAWLRKLSRPTLLLINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + ++E A + F E VSA G DD+L+ + LP Sbjct: 124 TDEDSV--RSEFA-RYGFGE-MLTVSAAHRQGLDDLLDEVIQRLP 164 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + + +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRILGEERMIASDVPGTTRDSIAVDLERDGREYRLIDTAGLRRRS 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + +I+ + L++D+ + +L + L++ +NK D Sbjct: 241 RVDEVVEKFSVVKTMQSIEQCQVAVLMLDATEGVTDQDATVLGAVLDAGRALVIAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFI--EKTFMVSATKGHGCDDVL 179 + E EQAE ++ KL F+ ++ +SA G G ++ Sbjct: 301 GLT-EYQREQAETMLSLKLGFVPWAESVRISAKHGSGLRELF 341 >gi|194476731|ref|YP_002048910.1| hypothetical protein PCC_0251 [Paulinella chromatophora] gi|171191738|gb|ACB42700.1| hypothetical protein PCC_0251 [Paulinella chromatophora] Length = 518 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 15/150 (10%) Query: 5 EITFFNEHKDFVQDNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT----- 57 +I E ++ +++ G + L GA ++GK++LV + KV V + +T Sbjct: 105 QIKSLYEERNRIENELERGDFLIVLFGAGSSGKTSLVRALLEKKVGRVEASMGSTVDCLN 164 Query: 58 -RSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 R ++G+ + ++ +DTPGIF A I+ W AD+V L+VDS +L+ Sbjct: 165 YRMHIQGL----KRKLTLIDTPGIFEAGQQGQLREIKARWQA-SRADLVLLIVDS--DLR 217 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 + + ++ + RL+++LNK D + + Sbjct: 218 LEEMEAIRSLKALRKRLLIVLNKSDLLTEQ 247 >gi|115351797|ref|YP_773636.1| GTP-binding protein EngA [Burkholderia ambifaria AMMD] gi|170702835|ref|ZP_02893684.1| small GTP-binding protein [Burkholderia ambifaria IOP40-10] gi|171321331|ref|ZP_02910290.1| small GTP-binding protein [Burkholderia ambifaria MEX-5] gi|122323095|sp|Q0BEX1|DER_BURCM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115281785|gb|ABI87302.1| small GTP-binding protein [Burkholderia ambifaria AMMD] gi|170132253|gb|EDT00732.1| small GTP-binding protein [Burkholderia ambifaria IOP40-10] gi|171093388|gb|EDT38576.1| small GTP-binding protein [Burkholderia ambifaria MEX-5] Length = 445 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHQMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D+ G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGQPEEADEDDPSRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + R +A++ KL F++ K+ +SA K G Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDDHARDRAKADLTRKLKFLDFAKSHYISAAKKTGIGA 340 Query: 175 ----CDDVLNYLCSTLP 187 DD + LP Sbjct: 341 LMRSVDDAYAAAMAKLP 357 >gi|227529882|ref|ZP_03959931.1| tRNA modification GTP-binding protein TrmE [Lactobacillus vaginalis ATCC 49540] gi|227350186|gb|EEJ40477.1| tRNA modification GTP-binding protein TrmE [Lactobacillus vaginalis ATCC 49540] Length = 462 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 11/167 (6%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N + +IVT+ TTR ++ V+ + +DT G Sbjct: 221 REGLATAIIGRPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + KD K+ + S + AD++ L++D+ EL +LL+ A + + I+ILNK Sbjct: 281 IHDTKDQVEKIGVERSRKALDAADLILLLIDNSEELTAEDRELLE--ATKDKQRIVILNK 338 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D P + +++ E+ KLV +K S K G +N L T+ Sbjct: 339 TDL--PNK-VDRDEL-KKLVGDDKLIETSIVKNEG----MNQLGETI 377 >gi|183600355|ref|ZP_02961848.1| hypothetical protein PROSTU_03918 [Providencia stuartii ATCC 25827] gi|188020146|gb|EDU58186.1| hypothetical protein PROSTU_03918 [Providencia stuartii ATCC 25827] Length = 390 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 17/173 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G NAGKST + AK + + T + + + E V D PG+ Sbjct: 162 VGMLGMPNAGKSTFIRSVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLIEGA 221 Query: 85 DSYHKLMIRL-----SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI----- 134 L IR + H +C + +S I ++ E+ K S +L Sbjct: 222 AEGAGLGIRFLKHLERCRVLLHLIDICPIDESDPVENAKI--IISELEKYSEKLAEKPRW 279 Query: 135 LILNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHG----CDDVLNYL 182 L+ NK+D + PE ++ AEIA + + +K +M+SA G C D++ ++ Sbjct: 280 LVFNKVDILGPEESAKRAAEIAKAMGWEDKYYMISAVNHEGVKALCWDIMEFM 332 >gi|218960708|ref|YP_001740483.1| GTP-binding protein [Candidatus Cloacamonas acidaminovorans] gi|167729365|emb|CAO80276.1| GTP-binding protein [Candidatus Cloacamonas acidaminovorans] Length = 449 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 21/188 (11%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R V++VG N GKSTL NR + +IV + TR V +DT GI Sbjct: 2 RKYIVSIVGRPNVGKSTLFNRLCRKRSAIVDFEAGITRDRKYEDVEWNGKIFKLVDTGGI 61 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK----RSSRLIL 135 FN+ ++ K+++ I +D++ +VD+ + D+ KEIAK +++L Sbjct: 62 VFNSIETIDKMVLHQVMLAIDESDLIIFMVDA----QTGTTDIDKEIAKILYPHKDKVML 117 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFM----VSATKGHGCDDVLNYLCSTLPLAPW 191 + NK D K E E+ + F++ F +SA++G D L+ + +P Sbjct: 118 VANKADNEKYE-----WEVYD---FLQLGFGDVIPISASQGRNTGDFLDAVIERIPGTQS 169 Query: 192 VYSADQIS 199 ++ ++ S Sbjct: 170 IFQLEEKS 177 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 7/136 (5%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 +++ S + +A+VG N GKS++VN +G IVT TTR + + + Sbjct: 173 LEEKSSATRIAVVGKPNVGKSSIVNLLLGNPKLIVTEIPGTTRDAIDSPFRYHNKDYILI 232 Query: 76 DTPGI-----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 DT G+ N Y + + I DIV LV+ + EL V + ++ Sbjct: 233 DTAGLRRKTRVNYGVEYFSTL--RTIEAIDRCDIVVLVLTADEELSVQDIKIASYAKRKM 290 Query: 131 SRLILILNKIDCVKPE 146 ++++ NK D ++ E Sbjct: 291 KEIMVVYNKWDLIEKE 306 >gi|220926315|ref|YP_002501617.1| GTP-binding proten HflX [Methylobacterium nodulans ORS 2060] gi|219950922|gb|ACL61314.1| GTP-binding proten HflX [Methylobacterium nodulans ORS 2060] Length = 471 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 71/165 (43%), Gaps = 14/165 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A+V T R I + DT G + Sbjct: 233 VVALVGYTNAGKSTLFNRLTAAEVRAEDLLFATLDPTARAIKLPHGETAILSDTVGFISD 292 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKE--IAKRSSRLILIL 137 + R + + AD + V D +H + + D +L E IA + R+I + Sbjct: 293 LPTMLIAAFRATLEDVIEADFLLHVRDMAHEDTQAQGQDVQAVLAELGIAPETDRIIEVW 352 Query: 138 NK---IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NK +D + ERLL + A K ++SA G G D +L Sbjct: 353 NKADLLDAPERERLLNLSRQAGA-----KPVLISALTGEGTDRLL 392 >gi|122702393|emb|CAL88387.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISSLIDAVLRALNL 168 >gi|4006|emb|CAA49238.1| GTPase [Saccharomyces cerevisiae] Length = 526 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 + L+GA N GKS+LVN +SIV+ TTR + +++ +++ DT GI + Sbjct: 277 LVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKS 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 D L I + +D+ +VD K+ D+L ++ ++ R+I+++NK Sbjct: 337 SDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIVVNKS 396 Query: 141 DCVKPERLLEQAEIANKL 158 D V + E ++ NKL Sbjct: 397 DLVSDD---EMTKVLNKL 411 >gi|158316815|ref|YP_001509323.1| small GTP-binding protein [Frankia sp. EAN1pec] gi|158112220|gb|ABW14417.1| small GTP-binding protein [Frankia sp. EAN1pec] Length = 462 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 10/177 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D R VAL+G N GKS+L+N+ G++ S+V TTR V +V+ +F+D Sbjct: 196 EDGPRR--VALIGRPNVGKSSLLNKLAGSERSLVHDVAGTTRDPVDELVTVGGETWMFID 253 Query: 77 TPGIFN----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 T G+ A + + +R + S ++ A++ +++ + + ++ + Sbjct: 254 TAGLRRRVKEASGAEYYSSLRTA-SALEAAEVAIVLLAADEPVTEQDQRIISMVTDAGRA 312 Query: 133 LILILNKIDCVKPERLLE-QAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTL 186 L+L NK D + ER L+ + EI +L V +SA G D + L ++L Sbjct: 313 LVLAFNKWDTLDTERRLDLEQEIVRELGRVAWAPRVNISARTGRATDRLAPALRTSL 369 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 18/174 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 27 VLAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDAVWNGRRFTLVDTGGW--- 83 Query: 84 KDSYHKLMIRLS---WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILI 136 + L R+S + + AD V V+D+ V D + +A+ RS R +IL Sbjct: 84 EPDARGLAARVSDQARAALDTADGVLFVIDA----TVGATDADEAVARVLHRSGRPVILA 139 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK+D + E A + + + + VSA G G D+L+ + + LP AP Sbjct: 140 ANKVDDAR----AEADAAALWSLGLGEPYPVSALHGRGSGDLLDAVLAVLPEAP 189 >gi|323489679|ref|ZP_08094906.1| GTP-binding protein Der [Planococcus donghaensis MPA1U2] gi|323396810|gb|EGA89629.1| GTP-binding protein Der [Planococcus donghaensis MPA1U2] Length = 436 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRVVGERVSIVEDIPGVTRDRIYSSADWLTHEFNIIDTGGIDLR 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + + AD++ +V+ + + K + K +IL +NKID Sbjct: 65 DEPFLEQIRQQAEIAMDEADVIIFLVNGRDGVTNQDEQVAKILYKTKKPVILAVNKIDNP 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++ + + + F +S + G G D+L+ + P Sbjct: 125 DMRHMIYDF----YTLGMGEPFPLSGSHGLGLGDLLDEVAKNFP 164 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%) Query: 13 KDFVQDNSRSGC-----VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 K+F QD+ +L+G N GKS+LVN F+G + IV+ TTR + Sbjct: 161 KNFPQDDDEEYPDNVIKFSLIGRPNVGKSSLVNSFLGEERVIVSEVAGTTRDAIDTQYEY 220 Query: 68 KESQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 E V +DT G+ Y K + + I+ +D+V +V+++ ++ + Sbjct: 221 NEQPYVIIDTAGMRKKGKVYETTEKYSVLRALRAIERSDVVLVVLNAEEGIQEQDKKIAG 280 Query: 125 EIAKRSSRLILILNKIDCV-KPERLLE--QAEIANKLVFIEKT--FMVSATKGHGCDDVL 179 + +I+I+NK D + K E+ + +I +F++ VSA G ++L Sbjct: 281 YAHEAGKAVIIIVNKWDAIEKDEKTMNVMTRKIREHFLFLDYAPIMFVSAISGKRVHNIL 340 >gi|261254056|ref|ZP_05946629.1| GTP-binding protein HflX [Vibrio orientalis CIP 102891] gi|260937447|gb|EEX93436.1| GTP-binding protein HflX [Vibrio orientalis CIP 102891] Length = 429 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TVSLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIELSDVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE +H++L EI ++++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVHEVLAEIDADEIPALVVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ + I + +T VSA +G G + + + L L Sbjct: 317 NKIDNLEG----QNPRIDRDDEGVPQTVWVSAMEGKGIELLFDALTERL 361 >gi|122702311|emb|CAL88346.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702131|emb|CAL88256.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|158321890|ref|YP_001514397.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs] gi|166988168|sp|A8MKR9|MNME_ALKOO RecName: Full=tRNA modification GTPase mnmE gi|158142089|gb|ABW20401.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs] Length = 461 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N V +IVT TTR I+ ++ K + +DT G Sbjct: 221 REGLSTVIVGKPNVGKSSLLNALVRESRAIVTDVPGTTRDIIEEHLNIKGIPLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S AD++ +++D+ REL +++ I + R ++I+NK Sbjct: 281 IRDTEDIVEKIGVERSKELFNLADLIIVMLDASRELTEEDLRIIELIENK--RALVIINK 338 Query: 140 IDC 142 D Sbjct: 339 TDL 341 >gi|73541768|ref|YP_296288.1| small GTP-binding protein domain-containing protein [Ralstonia eutropha JMP134] gi|72119181|gb|AAZ61444.1| Small GTP-binding protein domain [Ralstonia eutropha JMP134] Length = 414 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 10/176 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL N A T + R + + +V DT G Sbjct: 203 SISLVGYTNAGKSTLFNALTKAGAYAANQLFATLDTTSRRMFLDGLGNVVLSDTVGFIRD 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ ++ +L EI I+++N Sbjct: 263 LPTQLVEAFRATLDETVHADLLLHVVDASSPVRHEQIE-QVNRVLAEIEASGIPQIIVMN 321 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 KID PE L + + + +SA +G G D + S + +A W+ S Sbjct: 322 KIDAA-PELLEQGVRVERDEEGVPTRVFLSAREGIGLDALRQ---SIVEVAQWLAS 373 >gi|17507259|ref|NP_493573.1| hypothetical protein F39B2.7 [Caenorhabditis elegans] gi|3876919|emb|CAB07393.1| C. elegans protein F39B2.7, confirmed by transcript evidence [Caenorhabditis elegans] Length = 439 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 17/180 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 + L G N+GKS+++N+ V+IV+ TTR + I+ + DT G+ Sbjct: 213 IVLYGRPNSGKSSILNQLAHDDVAIVSSIPGTTRDSLETIIQINGVRCRLTDTAGVRQKT 272 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSRLILILNKI 140 D IR + I+ ADI+C+VVD ++ +L ++ R +R+I+ NK Sbjct: 273 NDVIEAEGIRRAQKRIQSADIICVVVDPQFTSDDDVESILNDVEVMRNREARVIIAKNKS 332 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL----PLAPWVYSAD 196 D L+ ++ + T +AT GC + N L + P A ++ AD Sbjct: 333 DLS-----LKYPKLPSNFT----TVSTNATTDTGCKQLQNCLGEIVDDLCPEASYLLDAD 383 >gi|14521287|ref|NP_126762.1| GTP-binding protein hflx [Pyrococcus abyssi GE5] gi|5458505|emb|CAB49993.1| hflX-like GTP-binding protein hflx [Pyrococcus abyssi GE5] Length = 423 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 17/134 (12%) Query: 24 CVALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSI-VRGIVSEKESQIVFLDTP 78 VAL G TNAGKSTL+N G AK + T TTR VRG ++ DT Sbjct: 187 LVALAGYTNAGKSTLLNALSGDYVEAKNQMFTTLSTTTRRFRVRG------KMLLVTDTV 240 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIH---DLLKEIAKRSSR 132 G + + + I ADI+ LV+D+ RE++ D+L+E+ Sbjct: 241 GFIDGLPPFIVEAFHSTLEEIVKADIIVLVLDASEPWREVRRKFFASLDVLRELKALDRP 300 Query: 133 LILILNKIDCVKPE 146 +I+ LNKID V E Sbjct: 301 MIIALNKIDLVSEE 314 >gi|75761491|ref|ZP_00741455.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491030|gb|EAO54282.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 332 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V K +IVT TTR ++ V+ + + +DT G Sbjct: 218 REGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 I +D ++ + S + AD+V +VV+ L++ + Sbjct: 278 IRETEDVVERIGVERSKEMMSQADLVLVVVNYSEALQMRM 317 >gi|260913735|ref|ZP_05920211.1| ribosome-associated GTPase EngA [Pasteurella dagmatis ATCC 43325] gi|260632274|gb|EEX50449.1| ribosome-associated GTPase EngA [Pasteurella dagmatis ATCC 43325] Length = 511 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 +A+VG N GKSTL NR +G +V TTR + I E++ Q +DT G+ Sbjct: 225 IAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIY-IPMERDGQHYTIIDTAGVRKR 283 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + K + + I+ A++V L +D+ + LL I L++++NK Sbjct: 284 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGVSDQDLSLLGFILNAGRSLVIVVNKW 343 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN-----YLCST 185 D + + + ++E+ +L FI+ + +SA G G ++ + Y C+T Sbjct: 344 DGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACAT 396 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 23/181 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR + ++V TR G + + +DT GI Sbjct: 5 VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGIDGT 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNKI 140 ++ + M S I+ AD+V +VD+ L + I + L++ +++ +L+ NK Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTSADIGIANYLRQ--RQNKITVLVANKT 122 Query: 141 DCVKPER------LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 D + + L EIA ++A++G G ++ + + P+A + + Sbjct: 123 DGIDADSHCAEFYQLGLGEIAQ----------IAASQGRGVSALMEQVLA--PIAERMNT 170 Query: 195 A 195 A Sbjct: 171 A 171 >gi|212550485|ref|YP_002308802.1| GTP-binding protein EngA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229710725|sp|B6YQB9|DER_AZOPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|212548723|dbj|BAG83391.1| GTP-binding protein EngA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 437 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 19/173 (10%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +IV + TTR V +DT G + Sbjct: 2 NNIVAIVGRPNVGKSTLFNRLTQSHQAIVDEEEGTTRDRQYSKVEWCGQIFSIIDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH---DLLKEIA---KRSSRL- 133 N+ D + + + + I+ ADI+ +VD IH DL ++IA +R +L Sbjct: 62 LNSDDIFEEEINKQVQIAIEEADIILFLVDV-------IHGTTDLDQQIAALLRREKKLV 114 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 IL+ NK D K + AE + + + VSA G G ++L+YL S Sbjct: 115 ILVSNKADNYK--LYAQSAEFY--ALGLGDPYNVSAINGSGTGELLDYLISNF 163 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 5/125 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+L+N + +IVT+ TTR + + + + +DT GI Sbjct: 177 AIAIVGKPNVGKSSLINALTNEERNIVTNIAGTTRDSIYTLYDKFGLKFYLVDTAGICKK 236 Query: 84 K----DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 K +S + +IR + +I+ +DI L++D+ + + ++ I K LI+++NK Sbjct: 237 KKVEENSEYYSIIR-AIRSIESSDICILLIDATQCIMAQDINIFSIIQKNEKGLIIVVNK 295 Query: 140 IDCVK 144 D ++ Sbjct: 296 WDLIQ 300 >gi|122702281|emb|CAL88331.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKLIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702301|emb|CAL88341.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYTFSSFG-----TPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|118462577|ref|YP_882247.1| GTP-binding protein EngA [Mycobacterium avium 104] gi|254775515|ref|ZP_05217031.1| GTP-binding protein EngA [Mycobacterium avium subsp. avium ATCC 25291] gi|166225825|sp|A0QH59|DER_MYCA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118163864|gb|ABK64761.1| GTP-binding protein EngA [Mycobacterium avium 104] Length = 466 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 6/140 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ + F+DT G+ Sbjct: 205 VALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELGDRVWRFVDTAGLRRKV 264 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + S I A++V +++D+ L +L + + L+L NK D Sbjct: 265 GQASGHEFYASVRTHSAIDAAEVVIVLIDASAPLTEQDQRVLSMVIEAGRALVLAFNKWD 324 Query: 142 CVKPER--LLEQAEIANKLV 159 V +R LLE+ EI +LV Sbjct: 325 LVDEDRRELLER-EIDRELV 343 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 4/159 (2%) Query: 29 GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 G N GKSTLVNR +G + ++V TR V + V DT G Sbjct: 36 GRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKGLQ 95 Query: 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERL 148 +L+ + ++ AD V LVVD+ + + + + L NK+D K E Sbjct: 96 QLVAEQASVAMRTADAVILVVDALVGATTADEAAARILLRSGKPVFLAANKVDSDKAE-- 153 Query: 149 LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 A + L E +SA G G D+L+ + + LP Sbjct: 154 -ADAAMLWSLGLGEP-HPISAMHGRGVADLLDEVLAALP 190 >gi|33865191|ref|NP_896750.1| GTP-binding protein EngA [Synechococcus sp. WH 8102] gi|41017009|sp|Q7U8G2|DER_SYNPX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33638875|emb|CAE07172.1| putative GTP-binding protein [Synechococcus sp. WH 8102] Length = 455 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G ++E ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + ++ A + ++VD + + + + + R +L +NK Sbjct: 64 DDDSEFLPEIREQAALAMEEASVAVVIVDGQQGITAADESIAEFLRSRPCPTLLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C PE+ L A L E +SA G G D+L+ + + LP Sbjct: 122 CESPEQGLAMAAEFWSLGLGEP-HPISAIHGVGTGDLLDQVLTFLP 166 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 8/185 (4%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 + ++ F KD D +A++G N GKS+L+N G + +IV+ TTR + Sbjct: 158 LDQVLTFLPPKDQEGDEEEPIQMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTID 217 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 + + +DT GI + + I S+ I +D+ LV+D+ + Sbjct: 218 TNIVRENRPWRLVDTAGIRRRRSVNYGPEYFGINRSFKAIDRSDVCVLVIDALDGVTEQD 277 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHG 174 L I + ++++NK D V+ + A E+ KL F++ M+ SA G Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDAVEKDSHTMTAMEKELRAKLYFLDWAPMLFTSALTGQR 337 Query: 175 CDDVL 179 D + Sbjct: 338 VDSIF 342 >gi|284050246|ref|ZP_06380456.1| GTP-binding protein Era [Arthrospira platensis str. Paraca] Length = 87 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 39/55 (70%) Query: 244 IRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDW 298 I I+VER SQK I++GK GQ +KTI A+++I ++++ V+L LFV+VQ W Sbjct: 17 ILATIHVERLSQKGILIGKGGQMLKTIGSAARQQIQKLVDGKVYLELFVRVQPKW 71 >gi|242255884|gb|ACS88926.1| GTPase [Helicobacter pylori] gi|242255886|gb|ACS88927.1| GTPase [Helicobacter pylori] Length = 170 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K++ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KNALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAVLNALDL 168 >gi|164686350|ref|ZP_02210380.1| hypothetical protein CLOBAR_02788 [Clostridium bartlettii DSM 16795] gi|164601952|gb|EDQ95417.1| hypothetical protein CLOBAR_02788 [Clostridium bartlettii DSM 16795] Length = 450 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 11/168 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N+ G ++SIV TR + V +DT GI Sbjct: 15 IVAVVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRIFAEVEWLNKYFTLIDTGGI--E 72 Query: 84 KDSYHKLMIRL---SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 KD+ ++ ++ + + A I+ VVD L ++ + + K + ++L +NKI Sbjct: 73 KDNGDVILSQMRNQAMLAVDMAHIIIFVVDGKAGLTAADKEVAQILRKTNKPVLLAVNKI 132 Query: 141 DCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + + + + E+ + + +S+ G D+L+ + P Sbjct: 133 DSINQMDNIYDFYELG-----LGNPYAISSANSMGLGDLLDEVVENFP 175 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKS+++N +G IV+ TTR + + Q + +DT GI Sbjct: 189 VAITGKPNAGKSSILNNILGENRVIVSPIAGTTRDAIDTYFEKDGQQYLLIDTAGIRRKS 248 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDS 111 Y ++ +IR S S ++ AD+V +V+D+ Sbjct: 249 KVYERVEKFSVIR-SMSAVERADVVLIVIDA 278 >gi|323703263|ref|ZP_08114914.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM 574] gi|323531728|gb|EGB21616.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM 574] Length = 461 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 15/189 (7%) Query: 18 DNSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 DN+ +G + ++G N GKS+L+N + + +IVT TTR I+ ++ + Sbjct: 211 DNADTGKIYREGLQTVIIGKPNVGKSSLLNALLKEQRAIVTDIPGTTRDIIEEFLNIQGV 270 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KR 129 + +DT G+ D KL + S I AD+V LV+D+ + D LK I+ + Sbjct: 271 PLKIIDTAGLRETDDLVEKLGVARSRQLINQADLVLLVLDATTGIT---EDDLKIISLVK 327 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + ++++NKID + R+ ++ + + T +SA + G D L L LA Sbjct: 328 DKKTLVLINKID-IAANRI--NSDKIKRYLGDSFTLEISAKQEIGLDK-LEQAILELVLA 383 Query: 190 PWVYSADQI 198 V +AD + Sbjct: 384 GKVTAADNV 392 >gi|332655106|ref|ZP_08420847.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16] gi|332515966|gb|EGJ45575.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16] Length = 457 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 ALVG NAGKS+L+N VG +IVT TTR + V + +DT G+ ++ D Sbjct: 225 ALVGRPNAGKSSLLNALVGYDRAIVTDIPGTTRDTLEAEVELGGVPLRLIDTAGLRDSSD 284 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +L + S ++ A+++ ++ DS +LL E A + ILI K D Sbjct: 285 PIERLGVERSRQAMEEAELILVLWDSSVPATQEDGELL-ETALSLAPTILIHTKTD 339 >gi|292806684|gb|ADE42472.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINHNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|241668179|ref|ZP_04755757.1| tRNA modification GTPase TrmE [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876714|ref|ZP_05249424.1| tRNA modification GTPase trmE [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842735|gb|EET21149.1| tRNA modification GTPase trmE [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 450 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG NAGKS+L+N G + +IVT TTR IV+ + + +DT G+ ++ D Sbjct: 219 LVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRSSDDI 278 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILIL---NKI 140 I+ + I+ AD + V D + +V +I D++ E + + I I NKI Sbjct: 279 IESEGIKRAIKKIQEADQILFVTDDYTNSQVKFSDIKDIIPEFYHQIPKDIDITYVHNKI 338 Query: 141 DCVK 144 D +K Sbjct: 339 DLLK 342 >gi|254252261|ref|ZP_04945579.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] gi|124894870|gb|EAY68750.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] Length = 445 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 13/184 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D SR +A+VG N GKSTLVN +G I TTR + + +D Sbjct: 174 NDPSRGVKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLID 233 Query: 77 TPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ ++ K + + +I A++V L++D+ +++ + + ++ L Sbjct: 234 TAGLRRRGKVFEAIEKFSVVKTLQSIADANVVILLLDAQQDISDQDAHIAGFVVEQGRAL 293 Query: 134 ILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLC 183 ++ +NK D + R +A++ KL F++ K+ +SA K G DD Sbjct: 294 VIGVNKWDGLDEHARERAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAM 353 Query: 184 STLP 187 + LP Sbjct: 354 AKLP 357 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|122700625|emb|CAL87901.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|88857628|ref|ZP_01132271.1| GTP-binding protein HflX [Pseudoalteromonas tunicata D2] gi|88820825|gb|EAR30637.1| GTP-binding protein HflX [Pseudoalteromonas tunicata D2] Length = 453 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 13/138 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CVALVG TNAGKS+++ G++V + T + VR + E + +I+ DT G Sbjct: 232 CVALVGYTNAGKSSMMRALTGSEVLVENKLFATLDTTVRALQPETQPRILISDTVGFI-- 289 Query: 84 KDSYHKLMIRLSWSTIKH---ADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILI 136 K H L+ ST++ A ++ VVD S R ++++++E+ + ILI Sbjct: 290 KKLPHDLVASF-HSTLEEAHDASLLLYVVDASDPSFRSQLAVVNEVMQEVGVDETPKILI 348 Query: 137 LNKIDCVKPER---LLEQ 151 LNK D + ++ LLEQ Sbjct: 349 LNKSDNLTLQQQGELLEQ 366 >gi|107029013|ref|YP_626108.1| GTP-binding protein EngA [Burkholderia cenocepacia AU 1054] gi|116689829|ref|YP_835452.1| GTP-binding protein EngA [Burkholderia cenocepacia HI2424] gi|170733168|ref|YP_001765115.1| GTP-binding protein EngA [Burkholderia cenocepacia MC0-3] gi|123370031|sp|Q1BGX0|DER_BURCA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224312|sp|A0K7T2|DER_BURCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238688579|sp|B1JT88|DER_BURCC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|105898177|gb|ABF81135.1| Small GTP-binding protein domain protein [Burkholderia cenocepacia AU 1054] gi|116647918|gb|ABK08559.1| small GTP-binding protein [Burkholderia cenocepacia HI2424] gi|169816410|gb|ACA90993.1| small GTP-binding protein [Burkholderia cenocepacia MC0-3] Length = 445 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D+ G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGQPEEADEDDPSRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + R +A++ KL F++ K+ +SA K G Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDDHARDRAKADLTRKLKFLDFAKSHFISAAKKTGIGA 340 Query: 175 ----CDDVLNYLCSTLP 187 DD + LP Sbjct: 341 LMRSVDDAYAAAMAKLP 357 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|325524779|gb|EGD02753.1| GTP-binding protein Der [Burkholderia sp. TJI49] Length = 445 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 13/184 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D SR +A+VG N GKSTLVN +G I TTR + + +D Sbjct: 174 NDPSRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLID 233 Query: 77 TPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ ++ K + + +I A++V L++D+ +++ + + ++ L Sbjct: 234 TAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDAHIAGFVVEQGRAL 293 Query: 134 ILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLC 183 ++ +NK D + R +A++ KL F++ K+ +SA K G DD Sbjct: 294 VIGVNKWDGLDEHARERAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAM 353 Query: 184 STLP 187 + LP Sbjct: 354 AKLP 357 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKTIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|240102327|ref|YP_002958635.1| GTP-binding protein hflx (hflX) [Thermococcus gammatolerans EJ3] gi|239909880|gb|ACS32771.1| GTP-binding protein hflx (hflX) [Thermococcus gammatolerans EJ3] Length = 431 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 27/185 (14%) Query: 24 CVALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +AL G TNAGKSTL+N G A+ + T TTR G +++ DT G Sbjct: 190 LIALAGYTNAGKSTLLNALAGESVEARDQMFTTLDTTTRRFKLG-----RKRVLLTDTVG 244 Query: 80 IFNAKDSYHKLMIRLSWSTIKH---ADIVCLVVDS-------HRELKVNIHDLLKEIAKR 129 D+ ++ ST++ ADIV LV+D+ R+L +I ++L+E+ Sbjct: 245 FI---DNLPPFIVEAFHSTLEEIVKADIVLLVIDASEPWAEVRRKLLASI-EILRELKAL 300 Query: 130 SSRLILILNKIDCVKPERLLEQ----AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 ++++LNKID E + E+ EIA++L + + ++ K +++ L Sbjct: 301 DKPMVIVLNKIDLTNDEDVEEKRRRIMEIADELAPSVRAVVKTSAKLGILEELKRALEEI 360 Query: 186 LPLAP 190 +P P Sbjct: 361 IPSLP 365 >gi|190892852|ref|YP_001979394.1| GTP-binding protein [Rhizobium etli CIAT 652] gi|238692517|sp|B3PVJ6|DER_RHIE6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190698131|gb|ACE92216.1| GTP-binding protein [Rhizobium etli CIAT 652] Length = 473 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V TR G +DT G+ A Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEEA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++S M + + I AD+ VVD+ L L + + +R ++L+ NK Sbjct: 64 DEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 22/191 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E ++ V D+++ VA+VG NAGKSTL+NRF+G + + TR + + Sbjct: 190 GEDEEPVYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 249 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I DT G+ + KL + + I+ A+ V +V D+ + ++ + Sbjct: 250 RTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLV 309 Query: 127 AKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + +L NK D + K +RLL QA + +S G G Sbjct: 310 LREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGI-------RAVPISGQTGWG 362 Query: 175 CDDVLNYLCST 185 D ++ + T Sbjct: 363 LDKLMQSIIDT 373 >gi|166712110|ref|ZP_02243317.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 465 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ E Q + +DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRHYGVCRLDEQQPFIVVDTGGIAGD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 +D R + + AD+V VVD RE ++ D +L + K + + +L++NKID Sbjct: 65 EDGLAGATARQARAAAGEADLVLFVVDG-REGASSLDDEILAWLRKLARQTVLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E A + F +SA G D++L + + LP Sbjct: 124 TDEETV--RSEFA-RYGFC-NVVALSAAHRQGIDELLEEVGARLP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDGRQYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + QAE ++ KL F+ + +SA G G ++ + A +S + Sbjct: 301 G-QSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGMRELFQAIHRAHASATHEFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|118575546|ref|YP_875289.1| GTPase [Cenarchaeum symbiosum A] gi|118194067|gb|ABK76985.1| GTPase [Cenarchaeum symbiosum A] Length = 356 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 4/95 (4%) Query: 18 DNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 D R+G V +G + GKSTL+NR GA ++ + TT ++V G++ K ++I L Sbjct: 44 DVRRAGDATVVFIGMPSVGKSTLLNRLTGANSAVGAFQF-TTLTVVPGMMEYKGARIQIL 102 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 D PGI L R+ S + AD+V LV+D Sbjct: 103 DLPGIIKGASGGKGLGKRI-LSVARSADLVLLVLD 136 >gi|4467681|emb|CAB37792.1| GTP-binding protein homologue [Helicobacter pylori] gi|122702711|emb|CAL88545.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALNL 168 >gi|41407513|ref|NP_960349.1| GTP-binding protein EngA [Mycobacterium avium subsp. paratuberculosis K-10] gi|81831811|sp|Q740D6|DER_MYCPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41395866|gb|AAS03732.1| hypothetical protein MAP_1415 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 466 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 10/174 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ + F+DT G+ Sbjct: 205 VALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELGDRVWRFVDTAGLRRKV 264 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + S I A++V +++D+ L +L + + L+L NK D Sbjct: 265 GQASGHEFYASVRTHSAIDAAEVVIVLIDASAPLTEQDQRVLSMVIEAGRALVLAFNKWD 324 Query: 142 CVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 V +R LLE+ EI +LV + + +SA G ++ + + LA W Sbjct: 325 LVDEDRRELLER-EIDRELVQLRWAQRVNISAKTGRAVAKLVPAMETA--LASW 375 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 4/159 (2%) Query: 29 GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYH 88 G N GKSTLVNR +G + ++V TR V + V DT G Sbjct: 36 GRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKGLQ 95 Query: 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERL 148 +L+ + ++ AD V LVVD+ + + + + L NK+D K E Sbjct: 96 QLVAEQASVAMRTADAVILVVDALVGATTADEAAARILLRSGKPVFLAANKVDSDKAE-- 153 Query: 149 LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 A + L E +SA G G D+L+ + + LP Sbjct: 154 -ADAAMLWSLGLGEP-HPISAMHGRGVADLLDEVLAALP 190 >gi|303257594|ref|ZP_07343606.1| ribosome-associated GTPase EngA [Burkholderiales bacterium 1_1_47] gi|330999635|ref|ZP_08323344.1| ribosome biogenesis GTPase Der [Parasutterella excrementihominis YIT 11859] gi|302859564|gb|EFL82643.1| ribosome-associated GTPase EngA [Burkholderiales bacterium 1_1_47] gi|329574141|gb|EGG55717.1| ribosome biogenesis GTPase Der [Parasutterella excrementihominis YIT 11859] Length = 443 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 6/162 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKSTL+N +G I TTR + K+ +DT G+ Sbjct: 180 VAIAGRPNAGKSTLINALIGEDRLIAFDMPGTTRDAIEVEFQYKDRDYTLIDTAGLRRKG 239 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ +++V L++D+H + ++ I + L++ +NK D Sbjct: 240 KVFEAIEKFSVIKTLQAIESSNVVVLLLDAHAGIAEQDANIAGYILESGRALVVGVNKWD 299 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 + ER + E+ KL F+ K +SA + G +LN Sbjct: 300 SLDDYERRRVKEELERKLHFLRWAKIVYISALEKRGLHHLLN 341 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ ++V TR G + + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRHYGDGRIGDKPYLVIDTGGFEPI 63 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + K M + I +D+V +VD L + + + + + L++NK Sbjct: 64 RTEGIVKEMTGQAQLAITESDVVLFLVDGRAGLTPQDQRIAQNLRESGKKTYLVVNKA-- 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L E A+ + + + + +SA G G +++ + P Sbjct: 122 ---EGLTETAKAEFYELALGEPYTISAAHGEGVKALMDLVLEPFP 163 >gi|229084606|ref|ZP_04216875.1| GTP-binding protein engA [Bacillus cereus Rock3-44] gi|228698682|gb|EEL51398.1| GTP-binding protein engA [Bacillus cereus Rock3-44] Length = 436 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + I +D++ + + + ++ K + + ++L +NK+D Sbjct: 65 DEPFLTQIRQQAEVAIDESDVIIFMTNGRDGVTAADEEVAKILYRSKKPVVLAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + + L F E F +S T G G D+L+ P Sbjct: 123 NPEMRNDIYDFY-ALGFGEP-FPISGTHGLGLGDLLDEAAKHFP 164 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V S+ V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A S R +I+++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGI-IEQDKKIAGYAHDSGRAVIIVVNKWD 297 Query: 142 CVK 144 VK Sbjct: 298 AVK 300 >gi|218515056|ref|ZP_03511896.1| GTPase EngB [Rhizobium etli 8C-3] Length = 217 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 23/187 (12%) Query: 25 VALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQI---VFLDT 77 VA G +N GKS+L+N VG A+ S + Q V S + + +D Sbjct: 33 VAFAGRSNVGKSSLINALVGQKGLARTSNTPGRTQELNYFVPDGYSGEGGDLPPMAIVDM 92 Query: 78 PGIFNAK------DSYHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 PG A+ D + KL+ +T+K V +++DS +K N D+L + K Sbjct: 93 PGYGYAQAPKEQVDKWTKLVFDYLRGRATLKR---VYVLIDSRHGIKKNDEDVLTLLDKA 149 Query: 130 SSRLILILNKIDCVK----PERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + L+L K D + P+ L E A+ I + S+ KG G DD+ + Sbjct: 150 AVSYQLVLTKTDKITAPAVPKLLAETADKIRKRPAAYPAVLSTSSEKGDGLDDLRQAIAQ 209 Query: 185 TLPLAPW 191 T+ +A W Sbjct: 210 TVGIANW 216 >gi|168362384|ref|ZP_02695563.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903373|gb|EDT49662.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 438 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKSTL+N + +IVT TTR ++ ++ + LDT GI + Sbjct: 217 VLIIGKPNVGKSTLLNALCNEQKAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHSTN 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 D L I + I D+V +V ++ + + ++DL+K+ Sbjct: 277 DFVENLGINKAKELINKVDLVLYLVPANNQQDLELYDLIKD 317 >gi|18075583|emb|CAD11187.1| GTP-binding protein [Helicobacter pylori] gi|122702811|emb|CAL88595.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ + + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|254818899|ref|ZP_05223900.1| GTP-binding protein EngA [Mycobacterium intracellulare ATCC 13950] Length = 466 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 10/174 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ + F+DT G+ Sbjct: 205 VALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIQLGDRVWRFVDTAGLRRKV 264 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + S I A++V +++D+ L +L + + L+L NK D Sbjct: 265 GQASGHEFYASVRTHSAIDAAEVVIVLIDASDPLTEQDQRVLSMVIEAGRALVLAFNKWD 324 Query: 142 CVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 V +R LLE+ EI +LV + +SA G ++ + ++ LA W Sbjct: 325 LVDEDRRELLER-EIDRELVQLRWAPRVNISAKTGRAVQKLVPAMETS--LASW 375 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V + V DT G Sbjct: 31 VVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWTGRRFVVQDTGGWEPD 90 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L+ + ++ AD V LVVD+ + + + + L NK+D Sbjct: 91 AKGLQQLVAEQASVAMRTADAVILVVDAVVGATSADEAAARILLRSGKPVFLAANKVDSD 150 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E A + L E +SA G G D+L+ + + LP Sbjct: 151 KAE---ADAAMLWSLGLGEP-HAISAMHGRGVADLLDEVLAALP 190 >gi|271963792|ref|YP_003337988.1| GTP-binding family protein [Streptosporangium roseum DSM 43021] gi|270506967|gb|ACZ85245.1| GTP-binding family protein ; K03665 GTP-binding protein HflX [Streptosporangium roseum DSM 43021] Length = 494 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 17/172 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + + DT G Sbjct: 271 AVAIAGYTNAGKSSLLNRLTGAGVLVEDSLFATLDPTVRRAHTPEGRLFTLADTVGFV-- 328 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA----KRSSRLILI 136 + H+L+ R + + AD++ VVD SH + + + + + +A R I++ Sbjct: 329 RHLPHQLVEAFRSTLEEVGDADLILHVVDGSHPDPESQLAAVREVVADIEGARDIPEIVV 388 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLCSTLP 187 +NK D P + +L EK T +VSA G G D++L + LP Sbjct: 389 INKADVADP-------VVLAQLTAREKHTVVVSARTGAGIDELLAIIERELP 433 >gi|167972273|ref|ZP_02554550.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167974296|ref|ZP_02556573.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167988962|ref|ZP_02570633.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|195867400|ref|ZP_03079404.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273386|ref|ZP_03205922.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554346|ref|YP_002284431.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550729|ref|ZP_03771678.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551093|ref|ZP_03772039.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209425|gb|EDU06468.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018680|gb|EDU56720.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998243|gb|EDU67340.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660876|gb|EDX54129.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249906|gb|EDY74686.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541847|gb|ACI60076.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378908|gb|EEH01273.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379883|gb|EEH02245.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 438 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKSTL+N + +IVT TTR ++ ++ + LDT GI + Sbjct: 217 VLIIGKPNVGKSTLLNALCNEQKAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHSTN 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 D L I + I D+V +V ++ + + ++DL+K+ Sbjct: 277 DFVENLGINKAKELINKVDLVLYLVPANNQQDLELYDLIKD 317 >gi|153853314|ref|ZP_01994723.1| hypothetical protein DORLON_00710 [Dorea longicatena DSM 13814] gi|149754100|gb|EDM64031.1| hypothetical protein DORLON_00710 [Dorea longicatena DSM 13814] Length = 442 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKS+++N+ G + IV+ TTR + V VF+DT G+ Sbjct: 180 VAIVGKPNVGKSSIINKLTGKQRVIVSDVAGTTRDAIDTNVKYNGKDYVFIDTAGLRRKS 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +V+D+ + + +R +I+++NK D Sbjct: 240 KIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQDAKIAGIAHERGKGIIIVVNKWD 299 Query: 142 CVK 144 ++ Sbjct: 300 AIE 302 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + V+ + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVTWLDKEFTMIDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD M + I AD++ + D + L V+ + ++ +RS + ++L +NK+D Sbjct: 65 SKDIILSQMREQAQIAIDTADVIIFITDVRQGL-VDADSKVADMLRRSGKPVVLAVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + I VSA G D+L+ + + P Sbjct: 124 NFD-KFMPDVYEFYN--LGIGDPVPVSAASRLGIGDMLDAVIAHFP 166 >gi|172060768|ref|YP_001808420.1| GTP-binding protein EngA [Burkholderia ambifaria MC40-6] gi|238689149|sp|B1YR40|DER_BURA4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|171993285|gb|ACB64204.1| small GTP-binding protein [Burkholderia ambifaria MC40-6] Length = 445 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHQMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 13/183 (7%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D SR +A+VG N GKSTLVN +G I TTR + + +DT Sbjct: 175 DPSRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDT 234 Query: 78 PGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + +I A++V L++D+ +++ + + ++ L+ Sbjct: 235 AGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDAHIAGFVVEQGRALV 294 Query: 135 LILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLCS 184 + +NK D + R +A++ KL F++ K+ +SA K G DD + Sbjct: 295 IGVNKWDGLDDHARDRAKADLTRKLKFLDFAKSHYISAAKKTGIGALMRSVDDAYAAAMA 354 Query: 185 TLP 187 LP Sbjct: 355 KLP 357 >gi|222056913|ref|YP_002539275.1| tRNA modification GTPase TrmE [Geobacter sp. FRC-32] gi|221566202|gb|ACM22174.1| tRNA modification GTPase TrmE [Geobacter sp. FRC-32] Length = 455 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N GKS+L+N + K +IVT TTR ++ ++ + LDT GI + Sbjct: 222 SVVIAGKPNVGKSSLLNALLQEKRAIVTAIPGTTRDLIEEQMTINGLPVKLLDTAGIRES 281 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K ++LS + AD+V VVD+ +L+ ++ S +++ NK D Sbjct: 282 DDHVEKEGVKLSLEKLSSADLVLFVVDASSSFSAEDQSILERLSGFS--FMVVKNKSD 337 >gi|78186288|ref|YP_374331.1| GTP-binding protein EngA [Chlorobium luteolum DSM 273] gi|123583448|sp|Q3B5U3|DER_PELLD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78166190|gb|ABB23288.1| Small GTP-binding protein domain [Chlorobium luteolum DSM 273] Length = 436 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 14/169 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 +ALVG N GKSTL NR + K +IV T V R I G +E ++ +DT G Sbjct: 5 IALVGRPNVGKSTLFNRILREKAAIVDPTPGVTRDRHIAEGHWQGREFRL--MDTGGYAP 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKR---SSRLILILN 138 M+ + I+ ADI+ + D V+ DL L +I KR + L +N Sbjct: 63 EDGVISTAMLEQTMMAIQDADIIIFLADVRS--GVSYDDLELAKILKRDFSDKPIFLAVN 120 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K + P+ +E A + + + +SA G G D+L+ + T P Sbjct: 121 KAES--PQLAIEAASFVS--TGFTEPWAISARDGSGVADLLDEILLTFP 165 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A++G N GKS+ VN +G+ IV+ TTR + + K+ + + +DT G+ Sbjct: 179 LAVIGRPNVGKSSFVNALLGSNRQIVSSIPGTTRDAIDTRFTRKQQEFMLIDTAGLRKRT 238 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +A Y+ + S I+ ++ +++D+ ++ ++ A+R ++L++NK Sbjct: 239 KISAGIEYYSSL--RSERAIERCEVAIVMLDATPGIEKQDLKIINIAAERKRGVLLLVNK 296 Query: 140 IDCVK 144 D V+ Sbjct: 297 WDLVE 301 >gi|15839367|ref|NP_300055.1| tRNA modification GTPase TrmE [Xylella fastidiosa 9a5c] gi|14195286|sp|Q9P9U3|MNME_XYLFA RecName: Full=tRNA modification GTPase mnmE gi|9108024|gb|AAF85563.1|AE004083_2 thiophene and furan oxidation protein [Xylella fastidiosa 9a5c] Length = 451 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG N GKS+L+N +G+ +IVT TTR +R V + V +DT G+ D+ Sbjct: 225 LVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLRESVHFHGLEFVLVDTAGLREEGDA 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDS 111 + +R + + ++ AD+ +V+D+ Sbjct: 285 IEREGMRRTLNELQRADLALVVLDA 309 >gi|71275539|ref|ZP_00651825.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Dixon] gi|71902449|ref|ZP_00684393.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|170731351|ref|YP_001776784.1| tRNA modification GTPase TrmE [Xylella fastidiosa M12] gi|71163839|gb|EAO13555.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Dixon] gi|71727824|gb|EAO30073.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|167966144|gb|ACA13154.1| thiophene and furan oxidation protein [Xylella fastidiosa M12] Length = 451 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 16/152 (10%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVG N GKS+L+N +G+ +IVT TTR +R V + V +DT G+ D+ Sbjct: 225 LVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLRESVHFHGLEFVLVDTAGLREEGDA 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILILNKIDCV-K 144 + +R + + ++ AD+ +V+D+ I L L + R++ I NK+D + + Sbjct: 285 IEREGMRRTLNELQRADLALVVLDA---CDPQIGSLALADALTSVPRVLWIHNKLDLLTE 341 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 P L+ I VSA G G D Sbjct: 342 PPSALDTDVIP-----------VSAMTGAGLD 362 >gi|326504304|dbj|BAJ90984.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 527 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 15/190 (7%) Query: 5 EITFFNEHKDFVQDNSRS---GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ +H+ ++ +S V+LVG TNAGKSTL+NR GA V T Sbjct: 307 ELESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTT 366 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--- 118 R ++ + ++ + DT G + R + I + I+ +VD +L Sbjct: 367 RRVLMKSGTEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSIIVHLVDISHQLAQQQIG 426 Query: 119 -IHDLLKEIAKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +LKE+ S +++ NKID P R+ E+A + +SA G G + Sbjct: 427 AVDKVLKELDIDSVPKLVVWNKIDNTDNPLRVKEEAA-------KQGIICISAMNGDGLE 479 Query: 177 DVLNYLCSTL 186 ++ N + + L Sbjct: 480 ELCNAIQAKL 489 >gi|291571683|dbj|BAI93955.1| tRNA modification GTPase [Arthrospira platensis NIES-39] Length = 469 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + + +IVT TTR +V + + LDT G Sbjct: 223 RTGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D ++ + S + AD+V +D + +++ +++ R +I+++NK Sbjct: 283 IRKSDDKVEQIGVERSQIAAQSADLVLFTLDCEKGWTEGENEIYQQVKNRP--IIVVMNK 340 Query: 140 IDCVKPERL--LEQAEIANKLVFIEKTFMV--SATKGHGCDDV 178 D + +L L QA I N+L I+ + ++ +AT G D+ Sbjct: 341 SDRLSSAQLENLRQA-IINQL-DIKPSLIIATAATLNQGITDL 381 >gi|169629458|ref|YP_001703107.1| GTP-binding protein EngA [Mycobacterium abscessus ATCC 19977] gi|169241425|emb|CAM62453.1| Probable GTP-binding protein EngA [Mycobacterium abscessus] Length = 466 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 4/183 (2%) Query: 5 EITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 E+T F+ + + + VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 13 ELTEFDGDEGLDEPSVPPAVVAVVGRPNVGKSTLVNRIIGRREAVVQDIPGVTRDRVSYP 72 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 + + DT G +L+ + + AD++ LVVD+ + K Sbjct: 73 AEWLDRRFTVQDTGGWEADATGLQQLVAEQARHAMATADLIILVVDATVGATSTDEEAAK 132 Query: 125 EIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + + + L NK+D +R A + L E +SA G G D+L+ + + Sbjct: 133 LLRRSGKPVFLAANKVDS---DRAEADAAVLWSLGLGEP-MPISAMHGRGVADLLDRVVA 188 Query: 185 TLP 187 LP Sbjct: 189 DLP 191 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+NR G + ++V TT V ++ F+DT G+ Sbjct: 206 VALVGKPNVGKSSLLNRLSGDQRAVVHDTAGTTVDPVDTLIELGGKTWRFVDTAGLRRKV 265 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L + I+ A++ +++D+ + + +L + + L+L NK D Sbjct: 266 GQASGHEYYASLRTHGAIEAAEVAIVLLDASQPITEQDQRVLSMVIESGRALVLAFNKWD 325 Query: 142 CVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 V +R LLE+ E+ +L + + +SA G ++ L S L Sbjct: 326 LVDEDRRDLLER-EVDLQLAQLNWAQRVNISAKSGRAVQKLVPALESAL 373 >gi|254248074|ref|ZP_04941395.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184] gi|124872850|gb|EAY64566.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184] Length = 445 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D+ G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGQPEEADEDDPSRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + R +A++ KL F++ K+ +SA K G Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDDHARDRAKADLTRKLKFLDFAKSHFISAAKKTGIGA 340 Query: 175 ----CDDVLNYLCSTLP 187 DD + LP Sbjct: 341 LMRSVDDAYAAAMAKLP 357 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLIVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|124515035|gb|EAY56546.1| GTP-binding protein (EngA) [Leptospirillum rubarum] Length = 466 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 +A++G N GKSTL NR + + +IV + TR +G + K ++V DT GI Sbjct: 7 LIAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLV--DTGGIL 64 Query: 82 NAKDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D IR + ++ AD V V+D D++ I + + +NK+ Sbjct: 65 FGDDHPLGESIRKQALFALEEADAVIYVMDGREGYLPVDADVIGRIRRSGKPSVFAVNKV 124 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D VK E +L + +SA G D +L+ +P Sbjct: 125 DTVKTEEVLADFHRHG----VAPLIGISAAHGRNVDALLDPFLDLMP 167 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VA++G N GKSTLVNR +G + + + TTR + +V+ ++ F+DT G+ Sbjct: 203 VAVIGRPNVGKSTLVNRLLGEERLVTSPIPGTTRDAIDTLVTFRDKTYHFVDTAGLRKKG 262 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A+ S IR I ++I +++ + L +++++ LIL NK Sbjct: 263 KVAEASELYAQIRTD-RAILESEIAVVLLSAEDGLTDGDLRIIRQVIDHRRGLILAWNKW 321 Query: 141 DCVK 144 D +K Sbjct: 322 DTLK 325 >gi|121604778|ref|YP_982107.1| GTP-binding protein EngA [Polaromonas naphthalenivorans CJ2] gi|166225835|sp|A1VNF8|DER_POLNA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120593747|gb|ABM37186.1| small GTP-binding protein [Polaromonas naphthalenivorans CJ2] Length = 445 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +ALVG N GKSTL NR + +IV TR G + + +DT G + Sbjct: 4 VIALVGRPNVGKSTLFNRLTKTRDAIVADFAGLTRDRHYGNGKLGPHEYIVIDTGGFEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A +K M R + + +D+V VVD+ + +D+ + K +L NK Sbjct: 64 AVTGIYKEMARQTRQAVAESDVVIFVVDARAGISAQDYDIANYLRKLGKPTVLAANKA-- 121 Query: 143 VKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 E L E +++ + + + VSA+ G G +++ + L L Sbjct: 122 ---EGLPEGTQVSEFFELGLGEMLAVSASHGQGMRMLVDLALAPLNL 165 Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 6/160 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTL+N ++G + + TTR + + +DT G+ Sbjct: 182 LAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFEHAGQKFELIDTAGLRRKG 241 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I++A++V L++D+ + + + I + ++L +NK D Sbjct: 242 KVFEAIEKFSVVKTLQAIENANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAVNKWD 301 Query: 142 CVKP-ERLLEQAEIANKLVFIEKTFM--VSATKGHGCDDV 178 V +R L Q I +L F++ + +SA K G V Sbjct: 302 AVDAYQRELLQRSIETRLGFLKFASIHHISAIKRQGLGPV 341 >gi|122702181|emb|CAL88281.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD I+ L+ + +D++ VVD S +LK L +EI K + L++ Sbjct: 67 KDVLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|50313211|gb|AAT74553.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 332 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDIKLFREVFKINPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + E+A A + K+F +S + G +++ + + L L Sbjct: 128 DKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 169 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|209885506|ref|YP_002289363.1| small GTP-binding protein domain [Oligotropha carboxidovorans OM5] gi|209873702|gb|ACI93498.1| small GTP-binding protein domain [Oligotropha carboxidovorans OM5] Length = 469 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 12/170 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR VA++G NAGKSTL+N +G + + + + TTR + V K ++ DT G Sbjct: 195 SRPIRVAVLGRPNAGKSTLINYLLGEERLLTSPEAGTTRDSIAVDVEWKGRKLRVFDTAG 254 Query: 80 IFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LI 134 + D KL + + ++ A++V LV+D+ + DL L ++ +R R ++ Sbjct: 255 LRRRSRIDDKLEKLSVSDALRAVRFAEVVVLVMDAQNRFEE--QDLRLADLVEREGRAIV 312 Query: 135 LILNKIDCVK--PERLLEQAEIANKLVFIEKT---FMVSATKGHGCDDVL 179 L +NK D ++ P + E A++L+ + VS G G D ++ Sbjct: 313 LAVNKWDLIERTPGAIGALRESADRLLPQLRGAPLVAVSGLMGEGIDRLI 362 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL NR VG K+++V + TR G + +DT G+ + Sbjct: 14 TIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRREGQGRLGDLDFTIIDTAGLDSG 73 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + S M + + I AD + V+D+ L N + A+R+++ +L+L Sbjct: 74 PRGSLTARMQEQTEAAIAAADALMFVIDARAGLTPNDR-AFADFARRANKPVLLL----A 128 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E + IA + +SA G G D+ + L +P Sbjct: 129 NKSEGRHGEVGIAESYALGLGDPIGISAEHGEGLGDLYDALKDLMP 174 >gi|122700595|emb|CAL87886.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ ++ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNVLNL 168 >gi|169635760|emb|CAQ16333.1| t-RNA modification GTPase protein [Halomonas cupida] Length = 458 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G NAGKS+L++ G + +IVT TTR ++R + + +DT G+ + Sbjct: 219 VVIAGRPNAGKSSLLDALAGREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTD 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR---SSRLILILNKID 141 D K+ ++ + I AD V LVVD+ + L E ++ +++ LI NK D Sbjct: 279 DQVEKIGVQRALKAIGEADRVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKAD 338 >gi|134094495|ref|YP_001099570.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans] gi|166198721|sp|A4G4K6|DER_HERAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|133738398|emb|CAL61443.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans] Length = 447 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 8/170 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI-VFL 75 + RS +A+VG N GKSTLVN +G + I TTR + I E+E ++ + Sbjct: 175 ESKDRSIRLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRDSIE-IPFEREGKLYTLI 233 Query: 76 DTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI ++ K + + +I A++V L++D+ +++ + I + Sbjct: 234 DTAGIRRRGKVFEAIEKFSVVKTLQSISEANVVLLLLDAQQDISEQDAHIAGFILESGRA 293 Query: 133 LILILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 L++ +NK D + +R E + ++ KL F+ KT VSA K G ++ Sbjct: 294 LVVGVNKWDGLTSDRRDEIKIDLERKLGFLSFAKTHFVSALKSSGIGPMM 343 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 5/157 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRMGERPFLVIDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AK+ M + + + AD+V +VD + L + + + K ++L++NK + Sbjct: 64 AKEGIMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 +K + A+ + + +++SA G G D++ Sbjct: 124 MK--YTMVTADFYE--LGLGDPYVISAAHGDGVSDLV 156 >gi|29833066|ref|NP_827700.1| GTP-binding protein EngA [Streptomyces avermitilis MA-4680] gi|37999529|sp|Q828Y7|DER_STRAW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29610188|dbj|BAC74235.1| putative GTP-binding protein [Streptomyces avermitilis MA-4680] Length = 491 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 54 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGGWEQD 113 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ +++ + K ++L NK+D Sbjct: 114 VLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGQ 173 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A L E VSA G G D+L+ + LP AP Sbjct: 174 SGE---ADASYLWALGLGE-PHPVSALHGRGTGDMLDAVLEALPEAP 216 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+L+N+ G +V TTR V ++ F+DT GI Sbjct: 230 IALIGRPNVGKSSLLNKVAGEDRVVVNEIAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 289 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + A I ++D+ + V ++ ++L N Sbjct: 290 HLQQGADYYASLRTAAAVEKAEVAVI---LIDASESISVQDQRIVTMAVDAGRAIVLAFN 346 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 347 KWDTLDEER 355 >gi|27379163|ref|NP_770692.1| GTP-binding protein EngA [Bradyrhizobium japonicum USDA 110] gi|37999663|sp|Q89MZ0|DER_BRAJA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27352313|dbj|BAC49317.1| GTP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 460 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 +A++G N GKSTL NR VG K+++V TR G + + +DT G+ Sbjct: 4 TIAIIGRPNVGKSTLFNRLVGQKLALVDDLPGVTRDRREGEARLGDLEFTIIDTAGLDEG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 AK S M + + I AD + VVD+ L + A+R+++ ++L+ NK + Sbjct: 64 AKGSLTARMQEQTEAAIAQADALFFVVDARIGL-TPTDRAFADFARRANKPVLLVANKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + + + +SA G G ++ + L +P Sbjct: 123 G----KHGDAGAMEAFALGLGDPIQISAEHGEGMGELYDALAKLMP 164 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKSTL+N +G + + + + TTR + ++ K + DT G+ Sbjct: 190 VAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEINWKGREFRVFDTAGLRRRS 249 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 ++ KL + + ++ A++V L++D+ E + I DL++ + L+L N Sbjct: 250 RIEEKLEKLSVADALRAVRFAEVVVLMMDTQNRFEEQDLRIADLVE---REGRALVLAAN 306 Query: 139 KIDCVK 144 K D ++ Sbjct: 307 KWDLME 312 >gi|332284647|ref|YP_004416558.1| GTP-binding protein [Pusillimonas sp. T7-7] gi|330428600|gb|AEC19934.1| GTP-binding protein [Pusillimonas sp. T7-7] Length = 365 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 71/170 (41%), Gaps = 9/170 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A T + R + E Q+V DT G Sbjct: 191 SVSLVGYTNAGKSTLFNALTRAGAYAADQLFATLDTTTRRVWIEGAGQVVISDTVGFIRD 250 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRLILILNK 139 R + AD++ VVD+ E V ++ +L +I IL+ NK Sbjct: 251 LPPTLIAAFRATLEETVQADLLLHVVDAASPQRDEQIVEVNKVLADIGAADIPRILVYNK 310 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 ID E +E+ N+ I + F VSA G DD+ + + +A Sbjct: 311 IDLAGYEPRMER----NEHGTIARVF-VSAVGRTGLDDLRGAIVESGQIA 355 >gi|324514013|gb|ADY45734.1| tRNA modification GTPase mnmE [Ascaris suum] Length = 471 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 10/139 (7%) Query: 15 FVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 ++ ++ GC V ++G TN GKS+L+N V+IV+ TTR + + Sbjct: 220 MIEQRAQKGCLIIDGIRVVMLGQTNVGKSSLLNCIAERDVAIVSEVEGTTRDALEARIEL 279 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKE 125 ++F DT GI +A D I + + A ++ VVD+ + ++ + LL++ Sbjct: 280 ASVPVIFTDTAGIRSAHDFLEAESISRTIARAAEAHVLLPVVDASKCVDIAAEVDVLLRQ 339 Query: 126 I-AKRSSRLILILNKIDCV 143 + +SR++++ NKID + Sbjct: 340 CHCEDASRVVVVCNKIDLI 358 >gi|326202766|ref|ZP_08192633.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782] gi|325986843|gb|EGD47672.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782] Length = 460 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + + G N GKS+L+N+ G +IVT TTR I+ V+ DT G Sbjct: 219 REGLNIVIAGKPNVGKSSLLNQLSGNTKAIVTDIPGTTRDIIEEYVNINGIPAKITDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILILN 138 I N +D K+ + ++ + AD+ +V+ + E ++ D+ + + K LILI N Sbjct: 279 IRNTQDVVEKIGVNKAYEAVGQADLTIVVLSA--ETGIDDEDIEILNLVKNKKALILI-N 335 Query: 139 KIDCVKPERLLE-QAEIANKLVFIEKTFM 166 K D E++ E +A++ N + ++ + + Sbjct: 336 KTDLADKEQVNEIKAQLENHDIILKASVI 364 >gi|163867849|ref|YP_001609053.1| GTP-binding protein EngA [Bartonella tribocorum CIP 105476] gi|189037137|sp|A9IQH4|DER_BART1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|161017500|emb|CAK01058.1| GTP-binding protein [Bartonella tribocorum CIP 105476] Length = 474 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V K TR R I + K + F +DT G+ Sbjct: 4 TIAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRD--RRIHAAKLQDLRFDVIDTAGLE 61 Query: 82 NAKDSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 A D H L R+ T I AD++ V D+ + + + + K ++L+ N Sbjct: 62 EAGD--HTLEGRMRSQTKAAIDEADLILFVFDAKSGITPSDLNFASLVRKSGKPIVLVAN 119 Query: 139 K 139 K Sbjct: 120 K 120 >gi|122702483|emb|CAL88432.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 19/171 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ AK Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--AK 67 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILN 138 D+ I+ L+ + +D++ VVD S ++K L +E+ K + L++N Sbjct: 68 DALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVIN 122 Query: 139 KIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID K ER + I K+F +S + G +++ + L L Sbjct: 123 KIDNDKEKERACAFSSFG-----IPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|309807087|ref|ZP_07701066.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 03V1-b] gi|308166517|gb|EFO68717.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 03V1-b] Length = 431 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV + TR + Q V +DT GI Sbjct: 5 VVALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ L+ D + N+ + + +I ++ + +IL +NK D Sbjct: 65 DNVIEEQIKTQAEIAINEADVIVLLSDVTGHV-TNLDETIAKILYKAKKPIILAINKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + S Sbjct: 123 -NPEQRNDIYDFYS--LGLGDPIPVSGSHGTGLGDLLDAIVS 161 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +++G N GKS++VN +G IV TTR + I + + +DT GI Sbjct: 178 SIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGIRRKGK 237 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDS 111 Y K+ + S S I+ +D+ +V+D+ Sbjct: 238 VYEKVEKYSVMRSISAIEQSDVAIIVIDA 266 >gi|282882100|ref|ZP_06290741.1| ribosome-associated GTPase EngA [Peptoniphilus lacrimalis 315-B] gi|281298130|gb|EFA90585.1| ribosome-associated GTPase EngA [Peptoniphilus lacrimalis 315-B] Length = 439 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 13/203 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 V+++G N GKSTL N+ +G K+SI TR + S + + +DT G+ Sbjct: 5 VVSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGGLDLK 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D + + ++ + ++ + D + ++ + K + ++IL +NK D Sbjct: 65 DEDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVNKCDA 124 Query: 143 VKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 K E + + E+ + + ++VS+ +G G D+L+ + ++ Y AD+ DL Sbjct: 125 KKTKENIYDFFELG-----LGEPYLVSSEQGTGLGDLLDEVTKSID----KYVADKEDDL 175 Query: 202 PMFHFTAE--ITREKLFLHLHKE 222 + + + LF +L KE Sbjct: 176 IRVSIIGKPNVGKSSLFNYLSKE 198 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 V+++G N GKS+L N + SIVT+ TTR + + K+++ +F+DT G+ Sbjct: 178 VSIIGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDAIDTKIIYKDNEYIFVDTAGLRKRK 237 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+S + + + + I+ + + L+VD+ + + + +I+ +NK D Sbjct: 238 KIKESIERYSVIRTLTAIERSSVCLLLVDATEGISEQDSKIAGFAHDNNKAMIICVNKWD 297 Query: 142 CVKPERLLE---QAEIANKLVFIEKT--FMVSATKGHGCDDVL 179 ++ + +A++ +L F+ +SA KG +++L Sbjct: 298 AIEKDTYTMKNFEADVRRELPFLSYAPIIFISAMKGTRVEELL 340 >gi|261329213|emb|CBH12192.1| GTP-binding protein, putative [Trypanosoma brucei gambiense DAL972] Length = 576 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 12/142 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A+VG TN+GKS+LVNR VG + + + +TR V S K ++ +DT G+ Sbjct: 310 IAIVGRTNSGKSSLVNRLVGFERNRAVDEKNSTRDPVELPCSYKGRKLKLIDTAGLARHR 369 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 + A + + LS + I+ A +V +V D+ E N +D+ L +A +L N Sbjct: 370 YRADRDFIGRIHGLSVNEIRFAHVVIVVFDAT-EGHPNKYDMAVLHSVAAEGRPFLLCAN 428 Query: 139 KIDCVKPERLLEQAEIANKLVF 160 K D V L+Q+ A + F Sbjct: 429 KWDAV-----LDQSATAEAIDF 445 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 11/127 (8%) Query: 25 VALVGATNAGKSTLVNRF-----VGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +A+VG N+GKS+L N V + ++V TR V G + +DTPG Sbjct: 110 IAIVGRMNSGKSSLFNLLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIIDTPG 169 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + M+ ++ T++ AD V ++ L++ + + ++L+ NK Sbjct: 170 MVQGR------MVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPVVLLANK 223 Query: 140 IDCVKPE 146 +D ++ E Sbjct: 224 MDLIQEE 230 >gi|221198076|ref|ZP_03571122.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2M] gi|221204366|ref|ZP_03577383.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2] gi|221212773|ref|ZP_03585749.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD1] gi|221166986|gb|EED99456.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD1] gi|221175223|gb|EEE07653.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2] gi|221182008|gb|EEE14409.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2M] Length = 445 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 13/184 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D SR +A+VG N GKSTLVN +G I TTR + + +D Sbjct: 174 NDPSRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLID 233 Query: 77 TPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ ++ K + + +I A++V L++D+ +++ + + ++ L Sbjct: 234 TAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDAHIAGFVVEQGRAL 293 Query: 134 ILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLC 183 ++ +NK D + R +A++ KL F++ K+ +SA K G DD Sbjct: 294 VIGVNKWDGLDEHARERAKADLTRKLKFLDFAKSHFISAAKKTGIGALMRSVDDAYAAAM 353 Query: 184 STLP 187 + LP Sbjct: 354 AKLP 357 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 >gi|254385852|ref|ZP_05001171.1| GTP-binding protein engA [Streptomyces sp. Mg1] gi|194344716|gb|EDX25682.1| GTP-binding protein engA [Streptomyces sp. Mg1] Length = 486 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 46 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 105 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ ++K + + ++L NK+D Sbjct: 106 VLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVKLLRRAGKPVVLCANKVDGQ 165 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A+ A+ + + VS+ G G D+L+ + LP AP Sbjct: 166 SGE-----ADAASLWSLGLGQPHPVSSLHGRGTGDMLDAVLEALPEAP 208 >gi|157964826|ref|YP_001499650.1| GTP-binding protein EngA [Rickettsia massiliae MTU5] gi|157844602|gb|ABV85103.1| GTP-binding protein [Rickettsia massiliae MTU5] Length = 483 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 + LVG N GKSTL NR K +IV TR R K FL DTPG+ Sbjct: 42 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRD--RKYTDGKIGSFEFLLIDTPGLDE 99 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S + ++ + I AD++C +VD + + L + K + IL++NK C Sbjct: 100 NPNSMGERLMEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNK--C 157 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + KL F + +SA G G D+ + + + LP Sbjct: 158 ---EKAFDFDKEYYKLGF-DSMIAISAEHGTGLIDLYDEIIAKLP 198 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D + C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 207 IADPIKGDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIK 266 Query: 74 FLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S KL + ++IK A+ V L++D+ LK ++ + Sbjct: 267 LIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQDLNIASHVVNEG 326 Query: 131 SRLILILNKIDCVK 144 +++++NK D VK Sbjct: 327 RSIVIVVNKWDLVK 340 >gi|320109421|ref|YP_004185011.1| tRNA modification GTPase TrmE [Terriglobus saanensis SP1PR4] gi|319927942|gb|ADV85017.1| tRNA modification GTPase TrmE [Terriglobus saanensis SP1PR4] Length = 449 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 14/162 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G NAGKS+L N + +IVT TTR +V VS + +DT G+ ++ Sbjct: 223 IAVIGRPNAGKSSLFNALAERERAIVTPIAGTTRDVVTERVSIGGIPVELMDTAGLRESE 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D +L I S + AD+V +VD + + + + R +++ NKID Sbjct: 283 DFVEQLGIARSREALAEADLVLFIVDLQHGISEEERETIASLEGRPH--LVVANKIDLAP 340 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +A+ I SA G G D + L L Sbjct: 341 L--------LASDFALIP----TSANTGEGLDRLREALLQQL 370 >gi|122702309|emb|CAL88345.1| GTPase [Helicobacter pylori] gi|122702409|emb|CAL88395.1| GTPase [Helicobacter pylori] Length = 168 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 64 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD++ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 65 KDAFLSKEIKSFNLKAAQMSDLILYVVDGKLIPSDEDIK-----LFREVFKINPNCFLVI 119 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 120 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISVLIDAILHALGL 166 >gi|324512672|gb|ADY45241.1| tRNA modification GTPase mnmE [Ascaris suum] Length = 308 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 10/139 (7%) Query: 15 FVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 ++ ++ GC V ++G TN GKS+L+N V+IV+ TTR + + Sbjct: 57 MIEQRAQKGCLIIDGIRVVMLGQTNVGKSSLLNCIAERDVAIVSEVEGTTRDALEARIEL 116 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKE 125 ++F DT GI +A D I + + A ++ VVD+ + ++ + LL++ Sbjct: 117 ASVPVIFTDTAGIRSAHDFLEAESISRTIARAAEAHVLLPVVDASKCVDIAAEVDVLLRQ 176 Query: 126 I-AKRSSRLILILNKIDCV 143 + +SR++++ NKID + Sbjct: 177 CHCEDASRVVVVCNKIDLI 195 >gi|318040678|ref|ZP_07972634.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0101] Length = 449 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+NR ++ +IVT TTR +V + + + LDT GI Sbjct: 223 VAIVGRPNVGKSSLLNRLSCSERAIVTDLPGTTRDLVESELVLQGVPLTLLDTAGIRATT 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 D ++ I S S ++ AD V L+ D Sbjct: 283 DRVEQIGIERSRSALQVADAVLLLFD 308 >gi|271964501|ref|YP_003338697.1| GTP-binding protein [Streptosporangium roseum DSM 43021] gi|270507676|gb|ACZ85954.1| GTP-binding protein [Streptosporangium roseum DSM 43021] Length = 472 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 6/190 (3%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ ++ + ++ QD+ VA+VG N GKSTLVNR +G + ++V TR V Sbjct: 13 ELADLGTEDSSEEAGQDSGPQPVVAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRV 72 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 + + + +DT G + + + AD++ VVD+ + + + Sbjct: 73 TYDATWRGRRFTVVDTGGWDPDATGMALKIAEQAQVAAELADVILFVVDAVVGV-TDADE 131 Query: 122 LLKEIAKRSSR-LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 ++ + + S + +IL NK+D + E LE A + + + + VSA G D+L+ Sbjct: 132 IVGHVLRGSGKPVILAANKVDNQQME--LEAAGLW--ALGLGEPQPVSALHGRSSGDLLD 187 Query: 181 YLCSTLPLAP 190 + LP P Sbjct: 188 VILDKLPETP 197 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 12/158 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G + +V TTR V ++ F+DT GI Sbjct: 210 VALVGKPNVGKSSLLNKLAGEERVLVDPMAGTTRDPVDELIQLGGKTWRFVDTAGIRRRD 269 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y + R ++ ++I +++D+ L ++ + + +++ N Sbjct: 270 RELKGADFYASMRTR---GALERSEIAVVLIDASDVLTEQDLRIISLVIESGRAMVVAFN 326 Query: 139 KIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHG 174 K D + +R LE+ EI +LV + V+ + G Sbjct: 327 KWDLLDEDRRYYLEK-EIDRQLVRVPWALRVNISAKTG 363 >gi|326510903|dbj|BAJ91799.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 527 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 15/190 (7%) Query: 5 EITFFNEHKDFVQDNSRS---GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ +H+ ++ +S V+LVG TNAGKSTL+NR GA V T Sbjct: 307 ELESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTT 366 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--- 118 R ++ + ++ + DT G + R + I + I+ +VD +L Sbjct: 367 RRVLMKSGTEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSIIVHLVDISHQLAQQQIG 426 Query: 119 -IHDLLKEIAKRSSRLILILNKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +LKE+ S +++ NKID P R+ E+A + +SA G G + Sbjct: 427 AVDKVLKELDIDSVPKLVVWNKIDNTDNPLRVKEEAA-------KQGIICISAMNGDGLE 479 Query: 177 DVLNYLCSTL 186 ++ N + + L Sbjct: 480 ELCNAIQAKL 489 >gi|162148045|ref|YP_001602506.1| GTP-binding protein hflX [Gluconacetobacter diazotrophicus PAl 5] gi|161786622|emb|CAP56204.1| GTP-binding protein hflX [Gluconacetobacter diazotrophicus PAl 5] Length = 428 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 20/174 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N GA V T +RGI +I+ DT G + Sbjct: 203 VVALVGYTNAGKSTLFNALTGATVFAQDQLFATLDPTMRGIRLPSGRRIILSDTVGFISD 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE---LKVNIHDLLKEIAKRSS-------R 132 + R + + AD++ V D SH + + ++ D+L+ +A + R Sbjct: 263 LPTELIAAFRATLEEVAEADVILHVRDISHPDSAAQRADVEDVLEGMAGSGTLEDDWRRR 322 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +I + NK D + + + + + ++SA G G D+L + S L Sbjct: 323 VIEVQNKADLIGGR---------DAVPPRKGSVVISAITGEGLPDLLAAIDSRL 367 >gi|122702293|emb|CAL88337.1| GTPase [Helicobacter pylori] gi|122702303|emb|CAL88342.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYTFSSFG-----APKSFNISVSHNRGISALIDAVLDALNL 168 >gi|72390988|ref|XP_845788.1| GTP-binding protein [Trypanosoma brucei TREU927] gi|62359296|gb|AAX79737.1| GTP-binding protein, putative [Trypanosoma brucei] gi|70802324|gb|AAZ12229.1| GTP-binding protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 576 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 12/142 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A+VG TN+GKS+LVNR VG + + + +TR V S K ++ +DT G+ Sbjct: 310 IAIVGRTNSGKSSLVNRLVGFERNRAVDEKNSTRDPVELPCSYKGRKLKLIDTAGLARHR 369 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSSRLILILN 138 + A + + LS + I+ A +V +V D+ E N +D+ L +A +L N Sbjct: 370 YRADRDFIGRIHGLSVNEIRFAHVVIVVFDAT-EGHPNKYDMAVLHSVAAEGRPFLLCAN 428 Query: 139 KIDCVKPERLLEQAEIANKLVF 160 K D V L+Q+ A + F Sbjct: 429 KWDAV-----LDQSATAEAIDF 445 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 11/127 (8%) Query: 25 VALVGATNAGKSTLVNRF-----VGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +A+VG N+GKS+L N V + ++V TR V G + +DTPG Sbjct: 110 IAIVGRMNSGKSSLFNLLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIIDTPG 169 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + M+ ++ T++ AD V ++ L++ + + ++L+ NK Sbjct: 170 MVQGR------MVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPVVLLANK 223 Query: 140 IDCVKPE 146 +D ++ E Sbjct: 224 MDLIQEE 230 >gi|223983398|ref|ZP_03633584.1| hypothetical protein HOLDEFILI_00864 [Holdemania filiformis DSM 12042] gi|223964570|gb|EEF68896.1| hypothetical protein HOLDEFILI_00864 [Holdemania filiformis DSM 12042] Length = 447 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N + +IVT TTR +V G + + + +DT GI +D Sbjct: 224 ILGKPNVGKSSLLNALLEEDKAIVTEIAGTTRDLVEGEIHLRNVTLHLIDTAGIHQTEDR 283 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ I S ++ A+++ +V+D+ R LL R+ I+++NK D Sbjct: 284 VEQIGIERSMKALEEAELILIVLDASRPQDDEDRRLLDLTEGRNR--IVVINKKDLA 338 >gi|167766321|ref|ZP_02438374.1| hypothetical protein CLOSS21_00825 [Clostridium sp. SS2/1] gi|167712040|gb|EDS22619.1| hypothetical protein CLOSS21_00825 [Clostridium sp. SS2/1] gi|291558964|emb|CBL37764.1| GTP-binding protein HflX [butyrate-producing bacterium SSC/2] Length = 412 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V +VG TNAGKSTL+N F A V T + + I+ DT G F Sbjct: 201 VVCIVGYTNAGKSTLLNHFTNAGVYEEDQLFATLDPTTKSLDLSGGQTILMTDTVG-FIR 259 Query: 84 KDSYHKLMIRLSWSTI---KHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILI 136 K +H ++ ST+ K++D++ VVD+ K ++D LK++ S +I Sbjct: 260 KLPHH--LVEAFKSTLEEAKYSDLILHVVDASNPQKEKQMEAVYDTLKQLGANESPIITA 317 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NKID + + +L+ E +S G G D +L Sbjct: 318 FNKIDLLNGDEILKDPN-------AEAVVRISGKNGEGTDQLL 353 >gi|122702287|emb|CAL88334.1| GTPase [Helicobacter pylori] gi|122702327|emb|CAL88354.1| GTPase [Helicobacter pylori] Length = 168 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 64 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD++ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 119 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 120 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISVLIDAILHALGL 166 >gi|32267038|ref|NP_861070.1| GTP-binding protein EngA [Helicobacter hepaticus ATCC 51449] gi|41017015|sp|Q7VFY6|DER_HELHP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|32263090|gb|AAP78136.1| GTP-binding protein YphC [Helicobacter hepaticus ATCC 51449] Length = 487 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 11/169 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR + ++I + TTR + R ++ LDT GI Sbjct: 3 TIAILGKPNVGKSSLFNRLIKQHLAITSDVSGTTRDVKRACFDISGVEVELLDTGGI--- 59 Query: 84 KDSYHKLMIRLSWSTIK---HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D L ++S +++K AD+V +VD + + + + I K L+L++NK+ Sbjct: 60 -DKAEGLFAKVSANSLKAGQEADLVLYMVDGNVVPQDDDIAYFRTIQKAKKPLVLVINKV 118 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 D K ++Q E+ + +S G +L + L LA Sbjct: 119 DNDK----IKQQAWDFACFGAEQMYFISVHHNRGLSILLEAIFELLSLA 163 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V ++G N GKS+L+N +G + S+V+ TT V + + ++ F+DT GI A Sbjct: 204 AVGIIGRVNVGKSSLLNALLGKERSVVSEVAGTTIDPVDDEMDIEGKRVRFVDTAGIRRA 263 Query: 84 KDSY--HKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 + K + + + + + IV LV+D+ EL I L I K + +I++LN Sbjct: 264 SKIWGIEKFALLRTNAALAQSHIVILVLDASESFVELDEKISSL---IPKHALGVIVVLN 320 Query: 139 KID 141 K D Sbjct: 321 KWD 323 >gi|34581226|ref|ZP_00142706.1| possible thiophene and furan oxidation protein thdF [Rickettsia sibirica 246] gi|229587120|ref|YP_002845621.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5] gi|28262611|gb|EAA26115.1| possible thiophene and furan oxidation protein thdF [Rickettsia sibirica 246] gi|228022170|gb|ACP53878.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5] Length = 445 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 12/148 (8%) Query: 10 NEHKDFVQDNS-----RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 N +++ DN RSG +A++G N GKS+L+N + ++IV++ TTR I+ G Sbjct: 197 NTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEG 256 Query: 64 IVSEKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-ELKVNIHD 121 + I+ DT GI + D + I+ + ++ K ADI ++ D+ + + +N D Sbjct: 257 HLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKIIMFDAEKLDSSIN-ED 315 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLL 149 ++ I + + I I+NKID ++ ++ Sbjct: 316 IINLIDENT---ITIINKIDLIEASKIF 340 >gi|239982716|ref|ZP_04705240.1| ATP/GTP-binding protein [Streptomyces albus J1074] gi|291454564|ref|ZP_06593954.1| ATP/GTP-binding protein [Streptomyces albus J1074] gi|291357513|gb|EFE84415.1| ATP/GTP-binding protein [Streptomyces albus J1074] Length = 509 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + DT G Sbjct: 289 SVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRH 348 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + R + + +D++ VVD + E + ++++++ + I+++NK Sbjct: 349 LPHHLVEAFRSTMEEVGDSDLILHVVDGAHPAPEEQLAAVREVIRDVGAVNVPEIVVVNK 408 Query: 140 IDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCDDVLNYLCSTLP 187 D P + +L+ +EK VSA G G ++L + LP Sbjct: 409 ADAADP-------LVLQRLLRVEKHAIAVSARTGAGIGELLGMIDEILP 450 >gi|210633084|ref|ZP_03297651.1| hypothetical protein COLSTE_01559 [Collinsella stercoris DSM 13279] gi|210159238|gb|EEA90209.1| hypothetical protein COLSTE_01559 [Collinsella stercoris DSM 13279] Length = 429 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 11/149 (7%) Query: 11 EHKDFVQDNSRSGC----VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 E + VQ SR+G +AL G TNAGKS+L+NR G+ V T R Sbjct: 194 ERRRAVQSKSRTGSLAFRIALAGYTNAGKSSLLNRLTGSDVLAQDKLFATLDPTTRSYEL 253 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV---DSHRELKV-NIHDL 122 I DT G + + S ++ AD++ VV D R+ ++ ++ + Sbjct: 254 PGGRAITITDTVGFIQKLPHGLVEAFKSTLSEVRDADLILKVVDVSDEDRDRQIESVDRV 313 Query: 123 LKEIAKRSSRLILILNKIDCVKP---ERL 148 L ++ S R + + NKID + P ERL Sbjct: 314 LCDVHAESQRALTVYNKIDLLDPSEVERL 342 >gi|209550425|ref|YP_002282342.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238058977|sp|B5ZYX3|DER_RHILW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|209536181|gb|ACI56116.1| small GTP-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 473 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKSTL NR VG K+++V TR G +DT G+ Sbjct: 2 SFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLE 61 Query: 82 NA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 A ++S M + + I AD+ VVD+ L L + + +R ++L+ NK Sbjct: 62 EADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 22/183 (12%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+++ VA+VG NAGKSTL+NRF+G + + TR + + I DT Sbjct: 198 DDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDT 257 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ + KL + + I+ A+ V +V D+ + ++ + + + Sbjct: 258 AGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAV 317 Query: 135 LILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L NK D + K +RLL QA + +S G G D ++ + Sbjct: 318 LAFNKWDMIEDRQAVLADLREKTDRLLPQARGI-------RAVPISGQTGWGLDKLMQSI 370 Query: 183 CST 185 T Sbjct: 371 IDT 373 >gi|167758361|ref|ZP_02430488.1| hypothetical protein CLOSCI_00701 [Clostridium scindens ATCC 35704] gi|167664258|gb|EDS08388.1| hypothetical protein CLOSCI_00701 [Clostridium scindens ATCC 35704] Length = 442 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 79/157 (50%), Gaps = 8/157 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+++N+ +G + IV+ TTR + + + VF+DT G+ Sbjct: 180 IAIVGKPNVGKSSIINKLLGEQRVIVSDIAGTTRDAIDTDIVYNGKEYVFIDTAGLRRKN 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +V+D+ + + +R +I+++NK D Sbjct: 240 KIKEELERYSIIRTVTAVERADVVLIVIDATEGVTEQDAKIAGIAHERGKGIIIVVNKWD 299 Query: 142 CV-KPERLLEQ--AEIANKLVFI--EKTFMVSATKGH 173 + K ++ + + +E+ L F+ + VSA G Sbjct: 300 AIEKNDKTMREYDSEVRRVLSFMPYAEIMYVSAETGQ 336 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + V+ + +DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNVLAGGMISIVKDTPGVTRDRIYADVNWLDKDFTLIDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +KD M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SKDIILSQMREQAQIAIDTADVIIFITDVRQGL-VDSDSKVADMLRRSGKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + E N + I +SA G D+L+ + P Sbjct: 124 NFD-KFMPDVYEFYN--LGIGDPVPISAASRLGIGDMLDQVAEHFP 166 >gi|122700827|emb|CAL88002.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKVAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINHNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|21220251|ref|NP_626030.1| GTP-binding protein EngA [Streptomyces coelicolor A3(2)] gi|256788632|ref|ZP_05527063.1| GTP-binding protein EngA [Streptomyces lividans TK24] gi|289772527|ref|ZP_06531905.1| ribosome-associated GTPase EngA [Streptomyces lividans TK24] gi|10799853|emb|CAC12931.1| putative GTP binding protein [Streptomyces coelicolor A3(2)] gi|289702726|gb|EFD70155.1| ribosome-associated GTPase EngA [Streptomyces lividans TK24] Length = 492 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 55 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 114 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ +++ + K ++L NK+D Sbjct: 115 VLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGP 174 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A L E VSA G G D+L+ + LP AP Sbjct: 175 SGE---ADASYLWSLGLGEPQ-PVSALHGRGTGDMLDRVLEALPEAP 217 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+L+N+ G +V TTR V ++ F+DT GI Sbjct: 231 IALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 290 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + A I +VD+ + V ++ + +++ N Sbjct: 291 HLQQGADYYASLRTAAAVEKAEVAVI---LVDASESISVQDQRIVTMAVEAGRAIVVAYN 347 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 348 KWDTLDEER 356 >gi|57168525|ref|ZP_00367658.1| GTPase [Campylobacter coli RM2228] gi|305432942|ref|ZP_07402100.1| ribosome-associated GTPase EngA [Campylobacter coli JV20] gi|57020030|gb|EAL56707.1| GTPase [Campylobacter coli RM2228] gi|304444096|gb|EFM36751.1| ribosome-associated GTPase EngA [Campylobacter coli JV20] Length = 460 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L+G N GKS+L NR +++I + TTR + V + + +D+ G+ Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSEISGTTRDTNKTEVFINSKKALLIDSGGL--- 59 Query: 84 KDSYHKLMIRLSWSTI---KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D ++L + +T+ K +DI+ +VD + K + L++NK+ Sbjct: 60 -DESNELFKNVKKNTLKIAKQSDIILYLVDGKLSPDDEDRQFFHSLKKLGKPIALVINKV 118 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D K E E AN +++ F +S T G D++ N+L + L Sbjct: 119 DNKKDEE--RSWEFAN--FGVKEVFNLSVTHNIGLDELYNWLENFL 160 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 8/122 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L+N V + S+V+ TT V + K+ I F+DT GI Sbjct: 198 VGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESIVYKDKVIEFVDTAGIRKRG 257 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + + + + ++ I LV+D++ EL I L AK +I++LNK Sbjct: 258 KIQGLERFALNRTEKILSNSQIALLVLDANEGFNELDERIAGL---AAKHYLGVIIVLNK 314 Query: 140 ID 141 D Sbjct: 315 WD 316 >gi|157829012|ref|YP_001495254.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933734|ref|YP_001650523.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Iowa] gi|166234817|sp|A8GTM1|MNME_RICRS RecName: Full=tRNA modification GTPase mnmE gi|189036206|sp|B0BV57|MNME_RICRO RecName: Full=tRNA modification GTPase mnmE gi|157801493|gb|ABV76746.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908821|gb|ABY73117.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Rickettsia rickettsii str. Iowa] Length = 445 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 12/148 (8%) Query: 10 NEHKDFVQDNS-----RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 N +++ DN RSG +A++G N GKS+L+N + ++IV++ TTR I+ G Sbjct: 197 NTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEG 256 Query: 64 IVSEKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-ELKVNIHD 121 + I+ DT GI + D + I+ + ++ K ADI ++ D+ + + +N D Sbjct: 257 HLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKIIMFDAEKLDSSIN-ED 315 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLL 149 ++ I + + I I+NKID ++ ++ Sbjct: 316 IINLIDENT---ITIINKIDLIEASKIF 340 >gi|313887681|ref|ZP_07821363.1| tRNA modification GTPase TrmE [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846290|gb|EFR33669.1| tRNA modification GTPase TrmE [Peptoniphilus harei ACS-146-V-Sch2b] Length = 459 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 9/139 (6%) Query: 11 EHKDFVQDNS------RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E D + DNS R G ++G N GKS+L+N + +IVT TTR I+ Sbjct: 204 EKMDNLLDNSKNSRLLRDGINTVILGKPNVGKSSLLNGLLKYDRAIVTDIAGTTRDIIED 263 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 ++ + DT GI D K+ + ++ +K AD+V + D R+ + ++L Sbjct: 264 YINLDGVLLKITDTAGIRETDDEVEKIGVNIAREKLKEADLVIAIFDISRDFDKDDEEIL 323 Query: 124 KEIAKRSSRLILILNKIDC 142 I + + I ILNK D Sbjct: 324 NLI--KDKKHITILNKDDL 340 >gi|237745515|ref|ZP_04575995.1| GTP-binding protein engA [Oxalobacter formigenes HOxBLS] gi|229376866|gb|EEO26957.1| GTP-binding protein engA [Oxalobacter formigenes HOxBLS] Length = 445 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 6/175 (3%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E +D + R +A+VG N GKST++N +G + I TTR + Sbjct: 169 ETEDGIAGEQRPVRLAVVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIEIPFERDGK 228 Query: 71 QIVFLDTPGIFNAKDSYH---KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 +DT G+ + K + + I A++V L++D+ +++ + + Sbjct: 229 HYTLVDTAGLRKRGKVFQAIEKFSVVKTLQAISEANVVLLLLDAQQDISEQDAHIAGFVL 288 Query: 128 KRSSRLILILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + L++ +NK D + P++ E +AE+ KL F+ K VSA K G ++ Sbjct: 289 ESGRALVVGINKWDGLPPDKRREVKAEVERKLHFLSFAKFHYVSALKATGIGALM 343 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 7/169 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + M + + + +D+V +VD + + + + + K +IL++NK + Sbjct: 64 VKEGVLQEMAKQTKQAVAESDVVVFMVDGRQGITPHDKAITDYLRKCGRPVILVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +K A +A+ + + ++S+ G G +L +P AP Sbjct: 124 MK-----YTAVVADFYELGLGDPLVISSAHGDGVHTLLEEALGKVPYAP 167 >gi|122702405|emb|CAL88393.1| GTPase [Helicobacter pylori] gi|122702411|emb|CAL88396.1| GTPase [Helicobacter pylori] gi|122702413|emb|CAL88397.1| GTPase [Helicobacter pylori] gi|122702415|emb|CAL88398.1| GTPase [Helicobacter pylori] gi|122702419|emb|CAL88400.1| GTPase [Helicobacter pylori] Length = 168 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 64 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD++ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKLIPSDEDIK-----LFREVFKINPNCFLVI 119 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 120 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISVLIDAILHALGL 166 >gi|93004286|gb|ABE97063.1| YphC [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALDL 168 >gi|88809283|ref|ZP_01124792.1| GTP-binding protein EngA [Synechococcus sp. WH 7805] gi|88787225|gb|EAR18383.1| GTP-binding protein EngA [Synechococcus sp. WH 7805] Length = 455 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G S++E ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCHSREAIVHDEPGVTRDRTYQDGYWSDREFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + ++ A + ++VD + + + + + + + +L +NK Sbjct: 64 DDDSEFLPEIREQAALALEEASVALVIVDGQQGVTASDEAIAEFLRGQRCPALLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C PE+ L A L E + +SA G G ++L+ + + LP Sbjct: 122 CESPEQGLAMAAEFWSLGLGEP-YPISAIHGAGTAELLDQVLTYLP 166 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 10/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N G + +IV+ TTR + + + +DT GI + Sbjct: 180 LAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSLVRENRPWRLVDTAGIRRRR 239 Query: 85 D-SYHK--LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 SY I S+ I+ +D+ LV+D+ + L I + ++++NK D Sbjct: 240 SVSYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEEDGRACVVVVNKWD 299 Query: 142 CVKPER----LLEQAEIANKLVFIEKTFMV--SATKGHGCDDVL 179 V+ + +E+ + KL F++ M+ SA G D + Sbjct: 300 AVEKDSHTMPAMEKG-LRAKLYFLDWAPMLFTSALTGQRVDSIF 342 >gi|224476594|ref|YP_002634200.1| GTP-binding protein EngA [Staphylococcus carnosus subsp. carnosus TM300] gi|254783167|sp|B9DNV9|DER_STACT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222421201|emb|CAL28015.1| putative GTP-binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 436 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNVIDTGGI-EL 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ + IR I AD++ +V+ L + + + K + ++L +NK+D Sbjct: 64 TDAPFQTQIRAQAEIAIDEADVIIFMVNQREGLTQTDEMIAQMLYKTNKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 PE + + L F E F +S + G G D+L+ + + Sbjct: 123 -NPEMRTDIYDFY-ALGFGEP-FPISGSHGLGLGDLLDEVANNF 163 Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++L+G N GKS+LVN +G IV++ TTR + S ++ V +DT G+ Sbjct: 178 LSLIGRPNVGKSSLVNAILGEDRVIVSNIAGTTRDAIDTEYSYEDQDYVLIDTAGMRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I+ +++V +V+D+ + + + +++++NK D Sbjct: 238 KVYESTEKYSVLRALKAIERSNVVLVVLDAEEGIIEQDKRVAGYAHEEGKAVVIVVNKWD 297 Query: 142 CV 143 + Sbjct: 298 TL 299 >gi|78066578|ref|YP_369347.1| GTP-binding protein EngA [Burkholderia sp. 383] gi|123728977|sp|Q39FR3|DER_BURS3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77967323|gb|ABB08703.1| Small GTP-binding protein [Burkholderia sp. 383] Length = 445 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + + ++ +D+ G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGQPEEADEDDPSRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + R +A++ KL F++ K+ +SA K G Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDEHARDRAKADLTRKLKFLDFAKSHYISAAKKTGIGA 340 Query: 175 ----CDDVLNYLCSTLP 187 DD + LP Sbjct: 341 LMRSVDDAYAAAMAKLP 357 >gi|317499645|ref|ZP_07957905.1| GTP-binding protein HflX [Lachnospiraceae bacterium 5_1_63FAA] gi|316893059|gb|EFV15281.1| GTP-binding protein HflX [Lachnospiraceae bacterium 5_1_63FAA] Length = 412 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V +VG TNAGKSTL+N F A V T + + I+ DT G F Sbjct: 201 VVCIVGYTNAGKSTLLNHFTNAGVYEEDQLFATLDPTTKSLDLSGGQTILMTDTVG-FIR 259 Query: 84 KDSYHKLMIRLSWSTI---KHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILI 136 K +H ++ ST+ K++D++ VVD+ K ++D LK++ S +I Sbjct: 260 KLPHH--LVEAFKSTLEEAKYSDLILHVVDASNPQKEKQMEAVYDTLKQLGANESPIITA 317 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NKID + + +L+ E +S G G D +L Sbjct: 318 FNKIDLLNGDEILKDPN-------AEAVVRISGKNGEGTDQLL 353 >gi|299541770|ref|ZP_07052093.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZC1] gi|298725508|gb|EFI66149.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZC1] Length = 461 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR I+ V+ + + +DT GI +D Sbjct: 228 ILGRPNVGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDI 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ + S ++ AD++ V++ EL L + I + I+I+NK D + Sbjct: 288 VERIGVERSREALRGADLILFVLNYADELTAEDERLFETI--EAMDYIVIVNKTDLPQKI 345 Query: 147 RLLEQAEIANK 157 L E+A + Sbjct: 346 DLARVKELAGE 356 >gi|239827511|ref|YP_002950135.1| GTP-binding protein EngA [Geobacillus sp. WCH70] gi|259645879|sp|C5D3F4|DER_GEOSW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239807804|gb|ACS24869.1| small GTP-binding protein [Geobacillus sp. WCH70] Length = 436 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGI-DI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + IR I AD++ +V+ + ++ K + + + ++L +NKID Sbjct: 64 GDEPLLVQIRQQAEIAIDEADVIIFMVNGRDGVTAADEEVAKILHRSNKPVVLAVNKIDN 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L+ L F + + +S + G G D+L+ + P Sbjct: 124 PEMRDLIYD---FYALGFGD-PYPISGSHGTGLGDLLDAVARHFP 164 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-- 84 L+G N GKS+LVN +G + IV+ TTR V + + V +DT G+ Sbjct: 180 LIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKRGKI 239 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +S K + + I+ +D+V +V+++ + + + +I+++NK D + Sbjct: 240 YESTEKYSVLRALKAIERSDVVLVVLNAEEGIIEQDKKIAGYAHEAGRGVIIVVNKWDAI 299 Query: 144 K 144 + Sbjct: 300 E 300 >gi|122702143|emb|CAL88262.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +++ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFRKVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAVLNALNL 168 >gi|82701580|ref|YP_411146.1| small GTP-binding protein domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82409645|gb|ABB73754.1| GTP-binding protein HflX [Nitrosospira multiformis ATCC 25196] Length = 394 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR + T + R + +V DT G Sbjct: 207 SVSLVGYTNAGKSTLFNRLTRGHTYVADQLFATLDATTRKLFIADRGPLVLSDTVGFI-- 264 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD---SHRELKVN-IHDLLKEIAKRSSRLILIL 137 +D H L+ R + AD++ VVD S+R +++ ++ +LKEI IL+L Sbjct: 265 RDLPHTLVAAFRATLEETVQADLLLHVVDTSSSNRSEQIDEVNKVLKEIGADRIPQILVL 324 Query: 138 NKIDCV 143 NK D V Sbjct: 325 NKTDLV 330 >gi|317453513|emb|CBL87866.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVLHNRGISALIDAILNALNL 168 >gi|256810261|ref|YP_003127630.1| GTP-binding proten HflX [Methanocaldococcus fervens AG86] gi|256793461|gb|ACV24130.1| GTP-binding proten HflX [Methanocaldococcus fervens AG86] Length = 408 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 24/210 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V L+G TNAGK++L+N G + T + R I K +I+ DT G Sbjct: 188 SVGLIGYTNAGKTSLLNALTGERKESKNQVFTTLTTTTRAIKGVK-RKILVTDTVGFI-- 244 Query: 84 KDSYHKLMIRLSWSTIK---HADIVCLVVDS-------HRELKVNIHDLLKEIAKRSSRL 133 D MI STI+ ++D++ +VVD+ R+LKVN H++L +I +S + Sbjct: 245 -DDLPPFMIEAFLSTIEESANSDLILIVVDASDDIEEIKRKLKVN-HEILSKINCKSP-I 301 Query: 134 ILILNKIDCV---KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 I + NK+D + K +R+LE+ N+ +I VSA D ++ + L L+ Sbjct: 302 ITVFNKVDKITEEKKKRILEE---LNR--YIVNPIFVSAKYNINIDLLIEKILDNLNLSI 356 Query: 191 WVYSADQISDLPMFHFTAEITREKLFLHLH 220 D + + EI + L + H Sbjct: 357 GTIETDNPKLISYLYENTEIIEDVLDENKH 386 >gi|144899203|emb|CAM76067.1| GTP-binding protein, HSR1 [Magnetospirillum gryphiswaldense MSR-1] Length = 437 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 75/164 (45%), Gaps = 14/164 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR ++V T +RG+ QI+ DT G + Sbjct: 210 VALVGYTNAGKSTLFNRLTQSEVLAKDMLFATLDPTMRGLKLPSGRQIILSDTVGFIS-- 267 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIAKR---SSRLIL 135 D H+L+ R + + AD+V V D +H + + D +LKE+ L+ Sbjct: 268 DLPHELVAAFRATLEEVLEADVVVHVRDMAHPDTEAQASDVELVLKELGLGDMVDRGLVE 327 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 LNKID + PE E + N+ +SA G G D L Sbjct: 328 ALNKIDLL-PEGGREG--VVNQAARKPTALPISALTGAGVDAFL 368 >gi|50313209|gb|AAT74552.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 333 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPNDEDIKLFREVFKINPNCFLVINKIDN 127 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K + E+A A + K+F +S + G +++ + + L L Sbjct: 128 DKEK---ERA-YAFSSFGMPKSFNISVSHNRGISALIDAVLNALNL 169 Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|68171706|ref|ZP_00545063.1| Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88657837|ref|YP_507319.1| GTP-binding protein EngA [Ehrlichia chaffeensis str. Arkansas] gi|67998875|gb|EAM85570.1| Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88599294|gb|ABD44763.1| GTP-binding protein EngA [Ehrlichia chaffeensis str. Arkansas] Length = 442 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 11/179 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +++VG NAGKST +NR + IV+ + TTR + + + + +DT G+ Sbjct: 176 LSIVGRPNAGKSTFINRLLAENRMIVSPEPGTTRDSIDVEYTYRGQKFTLIDTAGMRKKA 235 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S + + +I +DIV L++DS ++ + + ++ +I+ LNK D Sbjct: 236 KVTESIEVTSVHKTIESINRSDIVILMIDSVYGIEQQDLSIAELAIQKGKAIIIALNKWD 295 Query: 142 CV-KPER--LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN-----YLCSTLPLAPWV 192 + K +R LL+ NKL F VSA K C+ ++ Y C T+ ++ V Sbjct: 296 MIAKKDRSELLKDICNYNKLNFKVPVIEVSALKNINCNKIIETSIELYKCLTMRISTSV 354 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 6/123 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKST+ NR K +IV++ TR G + +DT G+ N Sbjct: 4 IAIVGLPNVGKSTIFNRLTSQKSAIVSNIPNLTRDRREGDADLCGLKFKIVDTGGVDNTI 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ ++ S I+ +DI+ VVD+ H + + L++ K+ +ILI NK + Sbjct: 64 KLSSLVLDQVKLS-IEESDIIFFVVDARIEHDDKNIEFAKYLRKKVKKP--IILIANKCE 120 Query: 142 CVK 144 K Sbjct: 121 SQK 123 >gi|331086300|ref|ZP_08335380.1| hypothetical protein HMPREF0987_01683 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406066|gb|EGG85589.1| hypothetical protein HMPREF0987_01683 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 405 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+L+N G ++IV+ K TT +++ + +V +DTPG+ + Sbjct: 14 IGIFGKRNAGKSSLINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVLIDTPGL-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +L ++ ++ + DI LVVD + LL++I K+ ++ NK D Sbjct: 73 HGPLGELRVQKTYQMLNKTDIAILVVDGTIGMTEEDLALLEQIQKKQIPYVIAFNKCD 130 >gi|320093654|ref|ZP_08025534.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979402|gb|EFW10884.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 178 str. F0338] Length = 503 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 8/172 (4%) Query: 19 NSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +R G +A+VG N GKSTLVNR +G + ++V TR V +D Sbjct: 62 GTRPGLPVLAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVD 121 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 T G + + + + + AD V LV+D+ + + ++ + + ++L Sbjct: 122 TGGWEVDVKGLDRSVAEQAETAVDLADAVVLVLDATVGVTASDERIVTMLRAKRKPVVLA 181 Query: 137 LNKIDCVKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D +++A+ A + + + VSA G G D+L+ + + LP Sbjct: 182 ANKVDSA-----VQEADAAYLWGLGMGEPHPVSALHGRGVGDLLDAVAAVLP 228 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 10/145 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N G+ +V TTR V ++ F+DT GI Sbjct: 245 VALVGRPNVGKSSLLNALAGSSRVVVNELAGTTRDPVDELIELDGRPWWFVDTAGIRRKA 304 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y + + + I+ A++ +++D L +++++ L+++ N Sbjct: 305 HRTTGADYYASIRTQ---AAIEKAEVALVLIDGSEPLTEQDVRVVQQVIDAGRALVVVTN 361 Query: 139 KIDCVKPERLLE-QAEIANKLVFIE 162 K D V ER + E+ LV I+ Sbjct: 362 KWDLVDEERQRALRGELERDLVQIQ 386 >gi|122702687|emb|CAL88533.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALDL 168 >gi|122702489|emb|CAL88435.1| GTPase [Helicobacter pylori] gi|122702495|emb|CAL88438.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAILNALNL 168 >gi|122701329|emb|CAL88054.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLNL 168 >gi|122702255|emb|CAL88318.1| GTPase [Helicobacter pylori] Length = 168 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 64 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD++ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKLIPSDEDIK-----LFREVFKINPNCFLVI 119 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 120 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISVLIDAILHALGL 166 >gi|325912018|ref|ZP_08174420.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 143-D] gi|325476203|gb|EGC79367.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 143-D] Length = 435 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV + TR + Q V +DT GI Sbjct: 5 VVALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ L+ D + N+ + + +I ++ + +IL +NK D Sbjct: 65 DNVIEEQIKTQAEIAINEADVIVLLSDVTGHV-TNLDETIAKILYKAKKPIILAINKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + S Sbjct: 123 -NPEQRNDIYDFYS--LGLGDPIPVSGSHGTGLGDLLDAIVS 161 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +++G N GKS++VN +G IV TTR + I + + +DT GI Sbjct: 178 SIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGIRRKGK 237 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDS 111 Y K+ + S S I+ +D+ +V+D+ Sbjct: 238 VYEKVEKYSVMRSISAIEQSDVAIIVIDA 266 >gi|297195224|ref|ZP_06912622.1| GTP-binding protein engA [Streptomyces pristinaespiralis ATCC 25486] gi|297152707|gb|EFH31948.1| GTP-binding protein engA [Streptomyces pristinaespiralis ATCC 25486] Length = 494 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 58 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 117 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVDS ++K + + ++L NK+D Sbjct: 118 VLGIDASVAAQAEYAIEAADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKVDGP 177 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A + + + VS+ G G D+L+ + LP AP Sbjct: 178 SG----EADATALWSLGLGQPHPVSSLHGRGTGDMLDAVLEALPEAP 220 >gi|260753419|ref|YP_003226312.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552782|gb|ACV75728.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 434 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 32/177 (18%) Query: 7 TFFNEHKDF----VQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EH+ F + R G V L G NAGKSTL+N G ++I TTR ++ Sbjct: 199 ALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINALTGQDIAITAPIAGTTRDVI 258 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 + K + F DT G+ + D K I + I+ ADI+ + + Sbjct: 259 EVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEEADILLWLGQA---------- 308 Query: 122 LLKEIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +E K ++++ +ID PER + E+ +IA VSA G G D Sbjct: 309 --EEAPKTDGEVLVLYPQIDL--PERHPIPEKIDIA-----------VSAVTGEGID 350 >gi|167043989|gb|ABZ08675.1| putative GTP1/OBG family protein [uncultured marine crenarchaeote HF4000_APKG3K8] Length = 369 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 4/95 (4%) Query: 18 DNSRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 D R+G V ++G + GKSTL+N G+K S+V TT ++V G++ + ++I L Sbjct: 57 DVRRTGDATVVIIGLPSVGKSTLLNALTGSK-SLVGAFQFTTVTVVPGVLDYRGAKIQML 115 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 D PGI S L R+ S + ADIV LV+D Sbjct: 116 DLPGIIKGASSGKGLGKRI-LSVARSADIVLLVLD 149 >gi|122701579|emb|CAL88179.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLNL 168 >gi|53719151|ref|YP_108137.1| GTP-binding protein EngA [Burkholderia pseudomallei K96243] gi|124383522|ref|YP_001026075.1| GTP-binding protein EngA [Burkholderia mallei NCTC 10229] gi|126439512|ref|YP_001059220.1| GTP-binding protein EngA [Burkholderia pseudomallei 668] gi|126449445|ref|YP_001080656.1| GTP-binding protein EngA [Burkholderia mallei NCTC 10247] gi|126454834|ref|YP_001066487.1| GTP-binding protein EngA [Burkholderia pseudomallei 1106a] gi|161579520|ref|YP_103001.2| GTP-binding protein EngA [Burkholderia mallei ATCC 23344] gi|162210023|ref|YP_333745.2| GTP-binding protein EngA [Burkholderia pseudomallei 1710b] gi|167719273|ref|ZP_02402509.1| GTP-binding protein EngA [Burkholderia pseudomallei DM98] gi|167738270|ref|ZP_02411044.1| GTP-binding protein EngA [Burkholderia pseudomallei 14] gi|167815459|ref|ZP_02447139.1| GTP-binding protein EngA [Burkholderia pseudomallei 91] gi|167823871|ref|ZP_02455342.1| GTP-binding protein EngA [Burkholderia pseudomallei 9] gi|167845410|ref|ZP_02470918.1| GTP-binding protein EngA [Burkholderia pseudomallei B7210] gi|167902402|ref|ZP_02489607.1| GTP-binding protein EngA [Burkholderia pseudomallei NCTC 13177] gi|167910644|ref|ZP_02497735.1| GTP-binding protein EngA [Burkholderia pseudomallei 112] gi|167918673|ref|ZP_02505764.1| GTP-binding protein EngA [Burkholderia pseudomallei BCC215] gi|254177966|ref|ZP_04884621.1| GTPase family protein [Burkholderia mallei ATCC 10399] gi|254189054|ref|ZP_04895565.1| GTP-binding protein EngA [Burkholderia pseudomallei Pasteur 52237] gi|254259698|ref|ZP_04950752.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1710a] gi|254297432|ref|ZP_04964885.1| GTP-binding protein EngA [Burkholderia pseudomallei 406e] gi|254358306|ref|ZP_04974579.1| GTP-binding protein EngA [Burkholderia mallei 2002721280] gi|81824774|sp|Q63US9|DER_BURPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224313|sp|A3MK70|DER_BURM7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224314|sp|A2S2A6|DER_BURM9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224315|sp|A3NVW6|DER_BURP0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224316|sp|A3NA49|DER_BURP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52209565|emb|CAH35518.1| putative GTPase [Burkholderia pseudomallei K96243] gi|124291542|gb|ABN00811.1| ribosome-associated GTPase EngA [Burkholderia mallei NCTC 10229] gi|126219005|gb|ABN82511.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 668] gi|126228476|gb|ABN92016.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106a] gi|126242315|gb|ABO05408.1| ribosome-associated GTPase EngA [Burkholderia mallei NCTC 10247] gi|148027433|gb|EDK85454.1| GTP-binding protein EngA [Burkholderia mallei 2002721280] gi|157808014|gb|EDO85184.1| GTP-binding protein EngA [Burkholderia pseudomallei 406e] gi|157936733|gb|EDO92403.1| GTP-binding protein EngA [Burkholderia pseudomallei Pasteur 52237] gi|160699005|gb|EDP88975.1| GTPase family protein [Burkholderia mallei ATCC 10399] gi|254218387|gb|EET07771.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1710a] Length = 445 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + E ++ + + G +A+VG N GKSTLVN +G I TTR + Sbjct: 161 EVAYAGEPQESEEAAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 221 DFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++A KL F+E K +SA + G Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGA 340 Query: 175 ----CDDVLNYLCSTLP 187 DD LP Sbjct: 341 LMRSVDDAYAAAMKKLP 357 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A+ + + +SA G G +D++N Sbjct: 124 MK------YTAVASDFYELGLGDPRAISAAHGDGVNDMIN 157 >gi|167759928|ref|ZP_02432055.1| hypothetical protein CLOSCI_02292 [Clostridium scindens ATCC 35704] gi|167662547|gb|EDS06677.1| hypothetical protein CLOSCI_02292 [Clostridium scindens ATCC 35704] Length = 406 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+++N G ++IV+ K TT +++ + +V +DTPG+ + Sbjct: 14 IGIFGRRNAGKSSIINALTGQSLAIVSDVKGTTTDPVLKAMELLPLGPVVMIDTPGL-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L I+ ++ + DI LVVD + +L I + ++++NK D Sbjct: 73 EGELGALRIQKAYQVLNKTDIAVLVVDGTAGMTREDLLILDRIKDKKIPYVIVMNKADLA 132 Query: 144 KP 145 P Sbjct: 133 GP 134 >gi|134101736|ref|YP_001107397.1| GTP-binding protein EngA [Saccharopolyspora erythraea NRRL 2338] gi|291003092|ref|ZP_06561065.1| GTP-binding protein EngA [Saccharopolyspora erythraea NRRL 2338] gi|133914359|emb|CAM04472.1| small GTP-binding protein domain [Saccharopolyspora erythraea NRRL 2338] Length = 480 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 42 VLAVVGRPNVGKSTLVNRLLGRREAVVQDTPGVTRDRVAYDALWNGRRFTVVDTGGWEPD 101 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKIDC 142 + + + AD + LVVD+ + + + +RS R +L+ NK+D Sbjct: 102 AKGLQAAVAAQAEMAMSTADAILLVVDAQVGATAT-EEAVARVLRRSKRPVLVAANKVDD 160 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 ER + +A L E VS G G D+L+ + + P P Sbjct: 161 ---ERAMAEAHALWSLGLGEP-MPVSGLHGRGSGDLLDKILAVFPDVP 204 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 12/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+NR G ++V TT V +V F+DT G+ Sbjct: 217 VALVGKPNVGKSSLLNRLTGELRAVVDDVAGTTVDPVDSLVELDGEVWRFVDTAGLRKRV 276 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + Y L + + I+ A++ ++VD+ + L + + + L++ N Sbjct: 277 KTASGTEYYASLRTK---AAIEAAEVAIVLVDASQPLTEQDLRVFTMVVEAGRALVIAYN 333 Query: 139 KIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 K D V +R + EI +LV + + VSA G + L + L Sbjct: 334 KWDLVDEDRRHQLDKEIDRELVRVRWAERVNVSALTGRAVGKLAPTLRTAL 384 >gi|122702355|emb|CAL88368.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I ++ TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|122702377|emb|CAL88379.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|88607492|ref|YP_504995.1| GTP-binding protein EngA [Anaplasma phagocytophilum HZ] gi|88598555|gb|ABD44025.1| putative GTP-binding protein EngA [Anaplasma phagocytophilum HZ] Length = 440 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 7/171 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D R ++++G N GKST VN +G + I + TTR + S K ++ D Sbjct: 169 KDQDRPIAISIIGQPNVGKSTFVNSILGEERVITSGIAGTTRDSISAEYSYKGITLLLTD 228 Query: 77 TPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T GI ++ KL ++ + + + +V L+VD + + + K + Sbjct: 229 TAGIRKRTKVTENMEKLSVQSAIHALSKSHVVILIVDFTQGISQQDLSIASTAIKDGKGI 288 Query: 134 ILILNKIDCVKP----ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +L LNK D V + +L +++ F +SA + GCD VL+ Sbjct: 289 VLALNKADLVNDKAAEDAILNAIRQYSRVDFDVPIMKMSALENIGCDKVLS 339 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL NR K +IV+ TR +V + + +DT G+ + Sbjct: 4 VAIVGLPNVGKSTLFNRLTRRKSAIVSDIAHVTRDRKEALVDFCGLRFIAIDTGGVADGG 63 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + S K ++L+ +++AD+V V+D+ R + L K ++K +++ +IL+ NK + Sbjct: 64 EIQSLVKTQVQLA---LENADVVLFVIDAQRATDSHSTSLGKWLSKITNKPIILVANKCE 120 Query: 142 CVK 144 K Sbjct: 121 SNK 123 >gi|52786163|ref|YP_091992.1| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580] gi|163119516|ref|YP_079584.2| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580] gi|319645250|ref|ZP_07999483.1| GTP-binding protein engA [Bacillus sp. BT1B_CT2] gi|81825274|sp|Q65I15|DER_BACLD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52348665|gb|AAU41299.1| YphC [Bacillus licheniformis ATCC 14580] gi|145903023|gb|AAU23946.2| GTP-binding protein essential for cell growth [Bacillus licheniformis ATCC 14580] gi|317393059|gb|EFV73853.1| GTP-binding protein engA [Bacillus sp. BT1B_CT2] Length = 436 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 8/177 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNHDFNLIDTGGIEVG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + ++ AD++ + + + ++ K + + ++L +NK+D Sbjct: 65 DEPFLAQIRHQAEIAMEEADVIIFMTNGREGVTAADEEVAKILYRTKKPVVLAVNKVD-- 122 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 PE +A I + L F E F +S T G G D+L+ + P D++ Sbjct: 123 NPEM---RANIYDFYALGFGEP-FPISGTHGLGLGDLLDAVSEHFKNIPETKYEDEV 175 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 15/157 (9%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG------I 80 L+G N GKS+LVN +G + IV++ TTR + + + V +DT G + Sbjct: 180 LIGRPNVGKSSLVNAMIGEERVIVSNIAGTTRDAIDTRFTYNQRDFVIVDTAGMRKKGKV 239 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + A + Y L + I +++VC+V+D + + + +++++NK Sbjct: 240 YEATEKYSVLR---ALKAIDRSEVVCVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKW 296 Query: 141 DCV-KPERLLEQAE--IANKLVFIEKT---FMVSATK 171 D V K ER +++ E + + F++ FM + TK Sbjct: 297 DAVEKDERTMKEFEEKVRDHFQFLDYAPVLFMSALTK 333 >gi|15893098|ref|NP_360812.1| tRNA modification GTPase TrmE [Rickettsia conorii str. Malish 7] gi|21363014|sp|Q92GE8|MNME_RICCN RecName: Full=tRNA modification GTPase mnmE gi|15620303|gb|AAL03713.1| possible thiophene and furan oxidation protein thdF [Rickettsia conorii str. Malish 7] Length = 445 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 12/148 (8%) Query: 10 NEHKDFVQDNS-----RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 N +++ DN RSG +A++G N GKS+L+N + ++IV++ TTR I+ G Sbjct: 197 NTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEG 256 Query: 64 IVSEKESQIVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR-ELKVNIHD 121 + I+ DT GI + D + I+ + ++ K ADI ++ D+ + + +N D Sbjct: 257 HLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKIIMFDAEKLDSSIN-ED 315 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLL 149 ++ I + + I I+NKID ++ ++ Sbjct: 316 IINLIDENT---ITIINKIDLIEASKIF 340 >gi|71898142|ref|ZP_00680328.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|71732116|gb|EAO34172.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] Length = 465 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKSTL N + ++V + TR G+ + + +DT G+ Sbjct: 4 LVALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVG 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D R + AD++ VV+ D+L + K S +L++NKID Sbjct: 64 KEDGLAGATARQARLAAAEADVLLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V + +E A+ VSA G DD++ + + LP Sbjct: 124 VSDTTV--HSEFAH--YGFSDVVPVSAAHRQGLDDLIEQVLAWLP 164 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 F +D+ R +A VG N GKSTLVNR +G + IV+ TTR + + E + Sbjct: 172 FNEDSERI-HIAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDEFRYRL 230 Query: 75 LDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +DT G+ +++ K + I+ + L++D+ + +L I Sbjct: 231 VDTAGLRRKSKVEEAVEKFSAFKTLQAIEQCQVAVLLLDAGEGVTDQDATVLAAILDAGK 290 Query: 132 RLILILNKIDCVKPERLLEQAE--IANKLVFIEKTFMVSATKGHGC 175 L++ +NK D + + EQAE ++ KL F+ +V + HG Sbjct: 291 ALVVAMNKWDGLATYQ-REQAEDLLSRKLGFVNWAEVVRLSAKHGS 335 >gi|122702763|emb|CAL88571.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALDL 168 >gi|122702315|emb|CAL88348.1| GTPase [Helicobacter pylori] gi|122702337|emb|CAL88359.1| GTPase [Helicobacter pylori] Length = 168 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 64 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD++ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 119 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 120 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISVLIDAILHALGL 166 >gi|37522779|ref|NP_926156.1| GTP-binding protein EngA [Gloeobacter violaceus PCC 7421] gi|41017005|sp|Q7NGF9|DER_GLOVI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|35213781|dbj|BAC91151.1| gll3210 [Gloeobacter violaceus PCC 7421] Length = 455 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 VA++G N GKSTL+NR G +IV + TR + + +DT G +F Sbjct: 6 VAIIGRPNVGKSTLLNRLAGGSEAIVYDQPGVTRDRLYLPAEWCGYRFEVVDTGGLVFED 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + L+ + A V VVD + + ++ + R ++++ NK++ Sbjct: 66 SEVFLPLIREQVEIALAEAAAVLFVVDGQQGITGGDREVADWLRGRKPPVLIVANKLE-- 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +P L A L E + VSA G G D+L+ L + LP Sbjct: 124 EPSTALSLAAEFYALGLGEP-YAVSAIHGSGTGDLLDALVAVLP 166 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 5/125 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAK--VSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 V++VG N GKS+L+N VG + S+V+ TTR + +V E + +DT GI Sbjct: 180 VSIVGRPNVGKSSLLNALVGGEHPRSMVSEVAGTTRDAIDTLVEHGERRYRLIDTAGIRR 239 Query: 83 -AKDSY--HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++ Y + + I+ AD+V LVVD+ + +L +IA +L++NK Sbjct: 240 KSRVDYGPEAFGVTRAIRAIRRADVVVLVVDATEGIHDQERNLAAKIASAGRACVLVVNK 299 Query: 140 IDCVK 144 D ++ Sbjct: 300 WDAIE 304 >gi|121602708|ref|YP_988693.1| GTP-binding protein EngA [Bartonella bacilliformis KC583] gi|166224307|sp|A1URU0|DER_BARBK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120614885|gb|ABM45486.1| GTP-binding protein EngA [Bartonella bacilliformis KC583] Length = 473 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 9/120 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 +A+VG N GKSTL NR VG K+++V K TR R I + + + F +DT G+ Sbjct: 5 IAIVGRPNVGKSTLFNRLVGKKLALVDDKPGVTRD--RRIHAARFQDLYFDVIDTAGLEE 62 Query: 83 AKDSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 A D H L R+ T I AD++ V+D+ + + + + K ++L+ NK Sbjct: 63 ADD--HTLEGRMRSQTKVAIDEADLILFVLDAKSGITSSDLNFASLVRKSEKPIVLVANK 120 Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 3/137 (2%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E + + D S +A+ G N GKSTL+N +G + + TR + + Sbjct: 192 EEEGCIYDESAPIRIAIAGRPNTGKSTLINSMLGQDRLLTGPEAGVTRDSISIDWEWRSR 251 Query: 71 QIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 I DT G+ ++ KL + + I+ A++V +V DS + ++ + Sbjct: 252 HIKLFDTAGLRRKSKIQEKLEKLSVTDTLRAIRFAEVVVIVFDSTAPFEKQDLQIVDLVI 311 Query: 128 KRSSRLILILNKIDCVK 144 + I+ NK D ++ Sbjct: 312 REGRVPIIAFNKWDLIE 328 >gi|134277744|ref|ZP_01764459.1| GTP-binding protein EngA [Burkholderia pseudomallei 305] gi|226197301|ref|ZP_03792878.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei Pakistan 9] gi|134251394|gb|EBA51473.1| GTP-binding protein EngA [Burkholderia pseudomallei 305] gi|225930680|gb|EEH26690.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei Pakistan 9] Length = 433 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + E ++ + + G +A+VG N GKSTLVN +G I TTR + Sbjct: 149 EVAYAGEPQESEEAAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 208 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 209 DFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 268 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++A KL F+E K +SA + G Sbjct: 269 HIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGA 328 Query: 175 ----CDDVLNYLCSTLP 187 DD LP Sbjct: 329 LMRSVDDAYAAAMKKLP 345 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 9/150 (6%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKDSYHKLMI 92 GKSTL NR ++ ++V TR G + +DT G AKD M Sbjct: 2 GKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVAKDGILHEMA 61 Query: 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQA 152 R + ++ AD+V +VD L + + K + L++NK + +K Sbjct: 62 RQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGMK------YT 115 Query: 153 EIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +A+ + + +SA G G +D++N Sbjct: 116 AVASDFYELGLGDPRAISAAHGDGVNDMIN 145 >gi|331081965|ref|ZP_08331093.1| GTP-binding protein engA [Lachnospiraceae bacterium 6_1_63FAA] gi|330405560|gb|EGG85090.1| GTP-binding protein engA [Lachnospiraceae bacterium 6_1_63FAA] Length = 441 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G K+SIV TR + V+ + +DT GI Sbjct: 5 IVAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYAEVTWLDKTFTMIDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + D M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SNDVILSQMREQAQIAIDTADVIIFMTDVRQGL-VDADSKVADMLRRSKKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + + +++ E N + I + +SA G D+L Sbjct: 124 SFQ-KFMMDTYEFYN--LGIGEPVPISAASMLGLGDML 158 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+L+N+ +G IV++ TTR + V+ + + F+DT G+ Sbjct: 180 IAVVGKPNVGKSSLINKILGEDRVIVSNIAGTTRDAIDTKVTYQGKEYTFIDTAGLRRKN 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +++D+ + + R +++ +NK D Sbjct: 240 KIKEELERYSIIRTVTAVERADVVVMMIDATEGVTEQDAKIAGIAHDRGKGVVIAVNKWD 299 Query: 142 CVK 144 ++ Sbjct: 300 AIE 302 >gi|329895357|ref|ZP_08270982.1| GTP-binding protein HflX [gamma proteobacterium IMCC3088] gi|328922370|gb|EGG29714.1| GTP-binding protein HflX [gamma proteobacterium IMCC3088] Length = 428 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A V T +R + + Q++ DT G Sbjct: 200 TVSLVGYTNAGKSTLFNHLTDADVYAADQLFATLDPTLRQLELDAIGQVILADTVGFI-- 257 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK-VNIH---DLLKEIAKRSSRLILIL 137 HKL+ + +A+++C+VVD+ + + N+H D+L EI + + Sbjct: 258 AHLPHKLVDAFNATLEETLNAELLCIVVDAASDQRDDNLHQVLDVLAEIGADKIPRLYVY 317 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK+D ++ E +E+ + + +SA G G D +L + L Sbjct: 318 NKLDLLEQEPRIERDADG-----VPERVWLSAKTGAGLDLLLEAVAERL 361 >gi|312131342|ref|YP_003998682.1| ribosome-associated gtpase enga [Leadbetterella byssophila DSM 17132] gi|311907888|gb|ADQ18329.1| ribosome-associated GTPase EngA [Leadbetterella byssophila DSM 17132] Length = 437 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 5/167 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR + +V+I ++ TR G + +DT G + Sbjct: 2 ANIVAIVGRPNVGKSTLFNRLIEERVAITDNQPGVTRDRHYGNAFWLKKHFTLIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NK 139 + D++ + + I+ A ++ VVD+ L + + ++ +RS + + I+ NK Sbjct: 62 VGSDDTFEEAIRSQVELAIEEATVILFVVDAKDGL-TELDEEFADVLRRSKKPVFIVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + ER A + + + +SA G G ++L+ C L Sbjct: 121 AETF--ERANLTASEFYGMGLNSEVYPISAIDGSGTGELLDAFCEHL 165 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 7/125 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A++G NAGKS+ +N +G SIVT TTR + + DT GI Sbjct: 180 IAILGRPNAGKSSFLNALLGKDRSIVTDIAGTTRDAIDTRYKMFGKDFILTDTAGIRKKA 239 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 N ++ ++ S + +D+ +++D+ + L+ ++ + ++L++NK Sbjct: 240 KVNEDLEFYSVL--RSIKALDKSDVCIILLDATKGLESQDISIIAQAHNAKKGIVLMVNK 297 Query: 140 IDCVK 144 D ++ Sbjct: 298 WDALE 302 >gi|294788428|ref|ZP_06753671.1| ribosome-associated GTPase EngA [Simonsiella muelleri ATCC 29453] gi|294483859|gb|EFG31543.1| ribosome-associated GTPase EngA [Simonsiella muelleri ATCC 29453] Length = 489 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 8/180 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFL 75 Q ++ A++G N GKSTLVN +G + I TTR + I E+E + + Sbjct: 170 QPENKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTII 228 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ ++ K + + I+ A++ LV+D+ +++ + + Sbjct: 229 DTAGVRKRGKVDEAVEKFSVIKAMQAIEAANVAVLVLDAQQDIADQDATIAGFALEAGRA 288 Query: 133 LILILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 L++ +NK D + ER + + +IA KL F++ K +SA K G D + + + + A Sbjct: 289 LVIAVNKWDGISEERRNDIKRDIARKLYFLDFAKFHYISALKEKGIDGLFDSIQAAYDAA 348 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTKTKDALVHDLPGLTRDRHYGHGRVGSKPYLVVDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS H+ M + + + AD V +VD+ L + + + S + L +NK + Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVIFLVDARTGLTPQDKIIADRLRQSSRPVFLAVNKGE 122 Query: 142 CV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGC----DDVLNYLCST 185 +P E E+A + + +++S G G +DVL T Sbjct: 123 GGNRPILAAEFYELA-----LGEPYVISGAHGDGVYYLIEDVLEKFPDT 166 >gi|163755505|ref|ZP_02162624.1| tRNA modification GTPase [Kordia algicida OT-1] gi|161324418|gb|EDP95748.1| tRNA modification GTPase [Kordia algicida OT-1] Length = 464 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 30/175 (17%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N + + +IV+ TTR + + F+DT GI K Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIDGISFRFIDTAGIRETK 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSR-----LIL 135 D + I+ ++ I+ A +V + D S+ + K + +L+EI K ++ +++ Sbjct: 284 DVVESIGIQKTFEKIEQAQVVIYLFDASLLSNDQEKSKV--MLQEIHKLQNKFPQKPIVI 341 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTF------MVSATKGHGCDDVLNYLCS 184 + NKID FI+ TF ++SA + G DD+ L S Sbjct: 342 VSNKID-------------KGDATFIKNTFEFDNLLLLSAKENIGVDDLKEKLVS 383 >gi|295691564|ref|YP_003595257.1| tRNA modification GTPase TrmE [Caulobacter segnis ATCC 21756] gi|295433467|gb|ADG12639.1| tRNA modification GTPase TrmE [Caulobacter segnis ATCC 21756] Length = 446 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 8/135 (5%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V+D R +ALVGA NAGKSTL+N V +IVT TTR ++ + +++ Sbjct: 209 VRDGYR---IALVGAPNAGKSTLLNGLVERDAAIVTDTPGTTRDVIEVPLVLGGYRVLIA 265 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DT G+ +D+ +R + + AD+ VVD V + L+ + L Sbjct: 266 DTAGLRETEDAIEAEGVRRARRWAEEADLRLWVVDG---FHVKQVEALESTVRPGD--WL 320 Query: 136 ILNKIDCVKPERLLE 150 ILNK D + L E Sbjct: 321 ILNKADIAAADALEE 335 >gi|121598397|ref|YP_993149.1| GTP-binding protein EngA [Burkholderia mallei SAVP1] gi|217421388|ref|ZP_03452892.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 576] gi|237812544|ref|YP_002896995.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei MSHR346] gi|238563546|ref|ZP_00438709.2| ribosome-associated GTPase EngA [Burkholderia mallei GB8 horse 4] gi|242314802|ref|ZP_04813818.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106b] gi|251767656|ref|ZP_02268028.2| ribosome-associated GTPase EngA [Burkholderia mallei PRL-20] gi|254197870|ref|ZP_04904292.1| GTP-binding protein EngA [Burkholderia pseudomallei S13] gi|254199946|ref|ZP_04906312.1| GTP-binding protein EngA [Burkholderia mallei FMH] gi|254206279|ref|ZP_04912631.1| GTP-binding protein EngA [Burkholderia mallei JHU] gi|52426961|gb|AAU47554.1| GTPase family protein [Burkholderia mallei ATCC 23344] gi|76581515|gb|ABA50990.1| GTPase family protein [Burkholderia pseudomallei 1710b] gi|121227207|gb|ABM49725.1| GTPase family protein [Burkholderia mallei SAVP1] gi|147749542|gb|EDK56616.1| GTP-binding protein EngA [Burkholderia mallei FMH] gi|147753722|gb|EDK60787.1| GTP-binding protein EngA [Burkholderia mallei JHU] gi|169654611|gb|EDS87304.1| GTP-binding protein EngA [Burkholderia pseudomallei S13] gi|217395130|gb|EEC35148.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 576] gi|237503777|gb|ACQ96095.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei MSHR346] gi|238520490|gb|EEP83949.1| ribosome-associated GTPase EngA [Burkholderia mallei GB8 horse 4] gi|242138041|gb|EES24443.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106b] gi|243062055|gb|EES44241.1| ribosome-associated GTPase EngA [Burkholderia mallei PRL-20] Length = 460 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + E ++ + + G +A+VG N GKSTLVN +G I TTR + Sbjct: 176 EVAYAGEPQESEEAAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 235 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 236 DFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 295 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++A KL F+E K +SA + G Sbjct: 296 HIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGA 355 Query: 175 ----CDDVLNYLCSTLP 187 DD LP Sbjct: 356 LMRSVDDAYAAAMKKLP 372 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 19 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPV 78 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 79 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 138 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A+ + + +SA G G +D++N Sbjct: 139 MK------YTAVASDFYELGLGDPRAISAAHGDGVNDMIN 172 >gi|70606461|ref|YP_255331.1| GTP-binding protein hflX [Sulfolobus acidocaldarius DSM 639] gi|29423764|gb|AAO73477.1| putative GTP-binding protein [Sulfolobus acidocaldarius] gi|68567109|gb|AAY80038.1| GTP-binding protein hflX [Sulfolobus acidocaldarius DSM 639] Length = 352 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 A+VG TNAGK+TL N G K + TT GI S +++ +DT G Sbjct: 178 TTAIVGYTNAGKTTLFNALTGLKQKTDSSMFTTTLPKRYGI-SVNGDKLLLVDTVGFIRG 236 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRE------LKVNIHDLLKEIAKRSSRLILIL 137 ++ S K+AD + LVVDS E + ++ +L++I +I++L Sbjct: 237 IPPQIVEAFYVTLSEAKYADSLLLVVDSSVEDTLFIDMILSSFKILRDIGISGKPMIIVL 296 Query: 138 NKIDCVKPERLLEQAEIANKLVF-----IEKTFMVSATKGHGCDDVLNYLC 183 NK D V + ++ +I K+V I +SA KG+ + + + L Sbjct: 297 NKADLVNNSDVDQKIDITWKIVKDLYTPIYDVIPISALKGYNINTIRDRLL 347 >gi|317493613|ref|ZP_07952034.1| obg family GTPase CgtA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918556|gb|EFV39894.1| obg family GTPase CgtA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 392 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 21/175 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G NAGKST + AK + + T + + + E V D PG+ Sbjct: 162 VGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDHEKSFVVADIPGLIEGA 221 Query: 85 DSYHKLMIRLSWSTIKHAD-------IVCLVVDSHRELKVNIHDLLKEIAKRSSRLI--- 134 L IR +KH + ++ L + N ++ E+ + S +L Sbjct: 222 SEGAGLGIRF----LKHLERCRVLLHLIDLAPIDESDPIENAKVIINELGQYSEKLSQKP 277 Query: 135 --LILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHG----CDDVLNYL 182 L+ NKID + PE ++A+ IA+ L + +K +++SA G C DV+++L Sbjct: 278 RWLVFNKIDILDPEEAKQRAQAIADALGWEDKHYLISAANREGVNALCWDVMHFL 332 >gi|302806046|ref|XP_002984773.1| hypothetical protein SELMODRAFT_121150 [Selaginella moellendorffii] gi|300147359|gb|EFJ14023.1| hypothetical protein SELMODRAFT_121150 [Selaginella moellendorffii] Length = 490 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 15/182 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-FLD 76 + R VA++G N GKS+++N VG + +IV+ TTR + V+ E ++ +D Sbjct: 203 EGDRPLSVAIIGRPNVGKSSILNAIVGKERTIVSPVSGTTRDAIDTEVAGPEGKVFRLID 262 Query: 77 TPG------IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 T G I + L ++ + I+ AD+V LV+++ + L + I K Sbjct: 263 TAGIRKRAAIASGGSKTESLCVQSALRAIRRADVVALVIEAMTCATEQDYRLGERIEKDG 322 Query: 131 SRLILILNKIDCVKPERLLEQA-----EIANKLVFIEKTFMV--SATKGHGCDDVLNYLC 183 I+++NK D V P++ E ++ KL ++ +V SAT G +L Sbjct: 323 KACIIVVNKWDTV-PDKNAESTYWYDMDVREKLRVLKWAPIVYTSATSGQRVQKILATAL 381 Query: 184 ST 185 S Sbjct: 382 SA 383 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 31/188 (16%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR VG ++IV + TR + G V + + +DT G+ Sbjct: 10 VAIVGRPNVGKSALFNRIVGRNMAIVHDEPGVTRDRLYGRVRGSVQEFMLIDTGGVLTIP 69 Query: 85 DSYH-----------------------KLMIRLSWSTIKHADIVCLVVDSHREL---KVN 118 S ++ + + S ++ A + VVD L + Sbjct: 70 TSAESGLAGGSVAAAQAKKDAAVAGLPSMIEQQAASAVEEACALVFVVDGQAGLTSADIE 129 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 I + L+ K ++ L +NK C P++ L QA L F VSA G G D+ Sbjct: 130 IGNWLRRKFKH-KKIALAVNK--CESPKKGLLQAAEFWSLGFTP--VPVSAISGSGVPDL 184 Query: 179 LNYLCSTL 186 L + S + Sbjct: 185 LEDVTSAI 192 >gi|227523332|ref|ZP_03953381.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290] gi|227089523|gb|EEI24835.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290] Length = 464 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +++G N GKS+L+N + +IVT TTR ++ + + +DT G Sbjct: 223 RDGLATSIIGRPNVGKSSLLNHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D K+ + S I AD+V LV+++ L L+ K+ + I++LNK Sbjct: 283 IRDTNDKVEKIGVDRSRKAINSADLVLLVLNASEPLTEEDRQLIDATNKK--KRIVVLNK 340 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 D P + L +EI +L + SA K G L L ST+ + S+ Sbjct: 341 TDL--PIK-LNLSEI-KRLTKAQNIISTSAIKADGLKG-LEELISTMFFNEGIASS 391 >gi|56552884|ref|YP_163723.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis ZM4] gi|81820837|sp|Q5NKZ8|MNME_ZYMMO RecName: Full=tRNA modification GTPase mnmE gi|56544458|gb|AAV90612.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis ZM4] Length = 434 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 32/177 (18%) Query: 7 TFFNEHKDF----VQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EH+ F + R G V L G NAGKSTL+N G ++I TTR ++ Sbjct: 199 ALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINALTGQDIAITAPIAGTTRDVI 258 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 + K + F DT G+ + D K I + I+ ADI+ + + Sbjct: 259 EVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEEADILLWLGQA---------- 308 Query: 122 LLKEIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +E K ++++ +ID PER + E+ +IA VSA G G D Sbjct: 309 --EEAPKTDGEVLVLYPQIDL--PERHPIPEKIDIA-----------VSAVTGEGID 350 >gi|332686552|ref|YP_004456326.1| GTP-binding protein EngA [Melissococcus plutonius ATCC 35311] gi|332370561|dbj|BAK21517.1| GTP-binding protein EngA [Melissococcus plutonius ATCC 35311] Length = 436 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + +DT GI Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDVPGVTRDRIYATGEWLGQAFSIIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + + I+ AD++ L + S RE + +L+ +I RS++ +IL +NK D Sbjct: 65 NEPFIEQIKQQAEIAIEEADVI-LFITSIREGITDADELVAKILYRSNKPIILAVNKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE E E + + + +S + G G D+L+ Sbjct: 123 -NPELRSEVYEFYS--LGLGDPIPISGSHGLGIGDMLD 157 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNAK 84 +L+G N GKS+L+N +G + IV+ TTR + + Q + +DT G+ Sbjct: 178 SLIGRPNVGKSSLINAILGEERVIVSEIEGTTRDAIDTYFTSPNGQKFLMIDTAGMRKRG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I+ +DIV +V+++ ++ + + +I+++NK D Sbjct: 238 KVYENTEKYSVMRAMRAIERSDIVLMVLNAQEGIREQDKRVAGYAHEAGRGIIILVNKWD 297 Query: 142 CVKPE 146 V+ E Sbjct: 298 AVEKE 302 >gi|237755977|ref|ZP_04584563.1| GTP-binding protein HflX [Sulfurihydrogenibium yellowstonense SS-5] gi|237691860|gb|EEP60882.1| GTP-binding protein HflX [Sulfurihydrogenibium yellowstonense SS-5] Length = 372 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 15/179 (8%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTH---KVQTTRSIVRGIVSE 67 E + +DN V+LVG TNAGKS+L+ R V I + T S++ + Sbjct: 182 EQRKSREDNPNILKVSLVGYTNAGKSSLLKRLTKRDVFISDQLFATLDTKTSLI--YFPD 239 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLL 123 E +++ DT G S + I+ AD++ V+D + + K + ++L Sbjct: 240 IEKKVLITDTVGFVEDMPSEIMDAFMTTLKEIEDADVILHVIDISDKNWMKKKTTVENVL 299 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K++ + I + NKID V P + L + ++ +E T +SA KG D + + L Sbjct: 300 KQLKLQDKPTITVFNKIDKVVPSKDLIEEDV------MENTITISAEKGWNIDKLFDIL 352 >gi|222149419|ref|YP_002550376.1| GTP-binding protein EngA [Agrobacterium vitis S4] gi|254783133|sp|B9JZQ5|DER_AGRVS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221736402|gb|ACM37365.1| GTP-binding protein [Agrobacterium vitis S4] Length = 474 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 22/191 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 ++ +D D+++ VA+VG NAGKSTL+NRF+G + + TR + + Sbjct: 191 DDEEDLAYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 250 Query: 70 SQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I DT G+ + KL + + I+ A+ V +V D+ + ++ + Sbjct: 251 RTIKMFDTAGMRRKARVIEKLEKLSVADTLRAIRFAETVVIVFDATIPFEKQDIQIVDLV 310 Query: 127 AKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + +L NK D V K ERLL QA I M T G+G Sbjct: 311 LREGRAAVLAFNKWDLVEDPQAVLAELREKTERLLPQAR------GIRAVPMAGQT-GYG 363 Query: 175 CDDVLNYLCST 185 + ++ + T Sbjct: 364 LEKLMQSIIDT 374 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKSTL NR VG K+++V TR G + + +DT G+ Sbjct: 2 SFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEAKLVDLRFHIVDTAGLE 61 Query: 82 NA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 A D+ M + I AD+ VVD+ L L + KR ++L+ NK Sbjct: 62 EAGADTLEGRMRAQTEIAIDEADLSLFVVDAKMGLTHVDKALADMLRKRGKPVVLVANK 120 >gi|156048568|ref|XP_001590251.1| hypothetical protein SS1G_09015 [Sclerotinia sclerotiorum 1980] gi|154693412|gb|EDN93150.1| hypothetical protein SS1G_09015 [Sclerotinia sclerotiorum 1980 UF-70] Length = 502 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 31/150 (20%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV-------------------RGIV 65 ++L+G NAGKS+L+N+ VG + SIV+ + TTR IV R V Sbjct: 221 ISLLGPPNAGKSSLLNQIVGREASIVSQEAGTTRDIVEVSLDIRGYLCTFADTAGLRTQV 280 Query: 66 SEKESQ-----IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 S ES I ++ GI AK ++ + ++ ++I+ +DI + E++ +I Sbjct: 281 SPSESGKNDSIIGHIEQEGIRRAKAKANESDVVIALASIEWSDI-----RNGWEIRYDIE 335 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLE 150 EIA ++ + ++ +NK D V PE L E Sbjct: 336 TF--EIAAKAPKSMIAINKSDSVTPEILSE 363 >gi|122702249|emb|CAL88315.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD++ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKLIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISVLIDAILHALGL 168 >gi|83952357|ref|ZP_00961088.1| GTP-binding protein EngA [Roseovarius nubinhibens ISM] gi|83836030|gb|EAP75328.1| GTP-binding protein EngA [Roseovarius nubinhibens ISM] Length = 479 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 11/176 (6%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA-KDSYHKLMI 92 GKSTL NR VG ++++V + TR + G + + +DT G+ +A DS M Sbjct: 2 GKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLEDATDDSLQGRMR 61 Query: 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKIDCVKPERLLEQ 151 RL+ + ADI V+D+ R I ++ EI KRS +IL NK + + Sbjct: 62 RLTERAVDMADICLFVIDA-RTGVTPIDEVFAEILRKRSEHVILAANKAEGAA----ADA 116 Query: 152 AEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMFHFT 207 I + + + +SA G G +D+ + L +PLA Y+ D P T Sbjct: 117 GVIEAYGLGLGEPIRLSAEHGEGLNDLYSQL---MPLADG-YAERARQDAPETDVT 168 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 22/193 (11%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R VA+VG NAGKSTL+N+ +G + + + TR + ++ + DT G Sbjct: 188 ARPLQVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLKMNWDGVPMRVFDTAG 247 Query: 80 I---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLIL 135 + ++ KL + +K A++V +++D+ + DL + ++A+R R ++ Sbjct: 248 MRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAA--IPFEQQDLRIADLAEREGRAVV 305 Query: 136 I-LNK--IDCVKPERLLEQAEIANKLVFIEKT---FMVSATKGHGCD----------DVL 179 + +NK I+ K E+L E +L+ + VSA G G D DV Sbjct: 306 VAVNKWDIEDEKQEKLRALKEAFERLLPQLRGAPLVTVSAKTGRGLDRLHAAIVKAHDVW 365 Query: 180 NYLCSTLPLAPWV 192 N ST L W+ Sbjct: 366 NRRVSTAQLNRWL 378 >gi|313665450|ref|YP_004047321.1| ribosome-associated GTPase EngA [Mycoplasma leachii PG50] gi|312949987|gb|ADR24583.1| ribosome-associated GTPase EngA [Mycoplasma leachii PG50] Length = 435 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 4/163 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKS+L NR + K SIV +K TR + + + +DT GI Sbjct: 5 IVAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILVDTGGISID 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + I+ AD++ VVD L + + K + K +IL +NK D Sbjct: 65 QQLFSNEIQIQTQIAIEQADVIIFVVDFLNRLDKDDKMIAKILHKSKKPVILAINKYD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ ++ + + +S+T G G D+L+ + S + Sbjct: 123 --KKTIDDHNYEFMNLGFSDLYFISSTHGIGIGDLLDKVISYI 163 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 7/153 (4%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 I++ +++ ++D+S +A++G N GKS+LVN V IV+ TT V Sbjct: 160 ISYISKNDADLKDDSTK--IAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISF 217 Query: 66 SEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 S +++ +DT GI + K S S I ++DIV L++D+ + + ++ Sbjct: 218 SYNKNKYTVIDTAGIRKKSKLGQTVEKYSYLRSLSAITNSDIVLLMIDATKPITDQDTNI 277 Query: 123 LKEIAKRSSRLILILNKIDCV--KPERLLEQAE 153 I +I+++NK D V K E++L++ E Sbjct: 278 GGLIYDEKKPVIIVVNKWDLVKNKQEQILKKEE 310 >gi|256016489|emb|CAR63540.1| putative Uncharacterized GTP-binding protein [Angiostrongylus cantonensis] Length = 390 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 12/140 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++GA N GKS L N+ V A VS V+ K+ TT V I++E Q++ +D+PG + Sbjct: 37 VAVIGAPNVGKSLLTNQLVRAAVSSVSSKMDTTVQNVNAILTEDNVQLILVDSPGTVGQR 96 Query: 85 DSY------HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL--ILI 136 + H ++ ++ A+ + LVV IH + + R S + L+ Sbjct: 97 HAREAMALNHNKVLTEPEKALQRAEHI-LVVQDATATGDYIHHRVLHLLHRYSHIPSSLV 155 Query: 137 LNKIDCVKPER--LLEQAEI 154 +NK+D V P R LLE I Sbjct: 156 INKVDMV-PRRSDLLELTRI 174 >gi|226306253|ref|YP_002766213.1| GTP-binding protein HflX [Rhodococcus erythropolis PR4] gi|229490877|ref|ZP_04384712.1| GTP-binding protein HflX [Rhodococcus erythropolis SK121] gi|226185370|dbj|BAH33474.1| putative GTP-binding protein HflX [Rhodococcus erythropolis PR4] gi|229322267|gb|EEN88053.1| GTP-binding protein HflX [Rhodococcus erythropolis SK121] Length = 491 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 14/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG TNAGKS+L+N G+ V + T R + + V DT G Sbjct: 268 SIAIVGYTNAGKSSLLNSLTGSGVLVENALFATLDPTTRRAALDDGREYVLTDTVGFVRH 327 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLIL 135 + R + + AD++ VVD L + D+L+E ++ ++ Sbjct: 328 LPTQLVEAFRSTLEEVTDADLLLHVVDGSDPLPTEQIKAVREVVTDVLRETDSKAPPELI 387 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++NKID P L + + VF VSA G G ++ +L L Sbjct: 388 VVNKIDAADPVTLTQLRGLLPGAVF------VSARTGEGIAELRAHLSEVL 432 >gi|122701467|emb|CAL88123.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|23100946|ref|NP_694413.1| tRNA modification GTPase TrmE [Oceanobacillus iheyensis HTE831] gi|32171820|sp|Q8CX54|MNME_OCEIH RecName: Full=tRNA modification GTPase mnmE gi|22779181|dbj|BAC15447.1| tRNA modification GTPase [Oceanobacillus iheyensis HTE831] Length = 459 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A++G N GKS+L+N V +IVT TTR I+ V+ + + +DT G Sbjct: 219 REGLSTAIIGRPNVGKSSLMNTLVQENKAIVTEIPGTTRDIIEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K +D++ V++ + L + L + A I+I+NK Sbjct: 279 IRETEDIVERIGVDRSRQVLKESDLILFVLNYNEPLSEDDKKLFE--AVDGLEYIVIINK 336 Query: 140 IDCVKPERLLEQAEIA 155 D + L E E A Sbjct: 337 TDLEQQLDLDEVREFA 352 >gi|294794209|ref|ZP_06759345.1| tRNA modification GTPase TrmE [Veillonella sp. 3_1_44] gi|294454539|gb|EFG22912.1| tRNA modification GTPase TrmE [Veillonella sp. 3_1_44] Length = 461 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 12/152 (7%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N + +IVT TTR + ++ + + +DT GI + +D+ Sbjct: 228 IVGCPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDT 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID---CV 143 L + + I ADIV V+D L ++L ++ ++ I++LNK D V Sbjct: 288 VEALGVERARDYINKADIVLCVIDGSTPLNPEEIEILTSVSGLNT--IVLLNKSDVAQVV 345 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 E + E IE+ +SA +G G Sbjct: 346 TDENIKEHG----NFTAIER---ISAKEGEGS 370 >gi|260588686|ref|ZP_05854599.1| ribosome-associated GTPase EngA [Blautia hansenii DSM 20583] gi|260541161|gb|EEX21730.1| ribosome-associated GTPase EngA [Blautia hansenii DSM 20583] Length = 441 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G K+SIV TR + V+ + +DT GI Sbjct: 5 IVAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYAEVTWLDKTFTMIDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + D M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SNDVILSQMREQAQIAIDTADVIIFMTDVRQGL-VDADSKVADMLRRSKKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + + +++ E N + I + +SA G D+L Sbjct: 124 SFQ-KFMMDTYEFYN--LGIGEPVPISAASMLGLGDML 158 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+L+N+ +G IV++ TTR + V+ + + F+DT G+ Sbjct: 180 IAVVGKPNVGKSSLINKILGEDRVIVSNIAGTTRDAIDTKVTYQGKEYTFIDTAGLRRKN 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +++D+ + + R +++ +NK D Sbjct: 240 KIKEELERYSIIRTVTAVERADVVVMMIDATEGVTEQDAKIAGIAHDRGKGVVIAVNKWD 299 Query: 142 CVK 144 ++ Sbjct: 300 AIE 302 >gi|210135034|ref|YP_002301473.1| GTP-binding protein EngA [Helicobacter pylori P12] gi|238058975|sp|B6JM65|DER_HELP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|210133002|gb|ACJ07993.1| GTP-binding protein-like protein [Helicobacter pylori P12] Length = 462 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + +D++ VVD L +E+ K + L++NKID Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDN 127 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + K+F +S + G +++ + + L L Sbjct: 128 DKEKERAYAFSSFGT-----PKSFNISVSHNRGISALIDAVLNALNL 169 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + S+V+ TT + + + +I F+DT GI + Sbjct: 203 VGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 262 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 263 KILGIEKYALERTQKALEKSHIALLVLDVSTPF-VELDEKISSLADKHSLGIILILNKWD 321 >gi|154483558|ref|ZP_02026006.1| hypothetical protein EUBVEN_01262 [Eubacterium ventriosum ATCC 27560] gi|149735468|gb|EDM51354.1| hypothetical protein EUBVEN_01262 [Eubacterium ventriosum ATCC 27560] Length = 441 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G K+SIV TR + + + + +DT GI + Sbjct: 5 IVAIVGRPNVGKSTLFNALAGKKISIVKDTPGVTRDRIHADIDWLDHKFTMIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + D M + I AD++ + D + L V+ + ++ +RS + +IL++NK+D Sbjct: 65 SNDIILSQMREQAQIAIDTADVIIFMTDVKQGL-VDSDAKVADMLRRSHKPVILVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + + + E N + I +SA++ G D+L+ + S Sbjct: 124 NFN-KMMADVYEFYN--LGIGDPVPISASQRSGLGDMLDKVVS 163 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKS+++N+ G IV++ TTR + V VF+DT G+ Sbjct: 180 IAIVGKPNVGKSSIINKITGESRVIVSNIAGTTRDAIDTDVKWNGKDYVFIDTAGLRRKS 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDS 111 K+ K I + + ++ AD+V +V+D+ Sbjct: 240 KVKEEIEKYSIIRTVTAVERADVVIIVIDA 269 >gi|325831411|ref|ZP_08164665.1| GTP-binding protein HflX [Eggerthella sp. HGA1] gi|325486665|gb|EGC89113.1| GTP-binding protein HflX [Eggerthella sp. HGA1] Length = 436 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 77/176 (43%), Gaps = 14/176 (7%) Query: 16 VQDNSR--SGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 VQ SR SG VAL G TNAGKS+L+NR A V T S R + + Sbjct: 206 VQRESRYESGMFKVALAGYTNAGKSSLLNRLTNADVLAYDKLFATLDSTTRKFELPEGRE 265 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIA 127 I DT G + + + I AD+V VVD S E + I D+L +I Sbjct: 266 ITVTDTVGFIQKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIH 325 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + +L+ NK D + ERL A K + F VSA G G +++ ++ Sbjct: 326 AQDLSRVLVFNKCDLLGEERL-----GALKARHPQAQF-VSAATGEGVGELVEHVA 375 >gi|292806498|gb|ADE42379.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILMALDL 168 >gi|17545940|ref|NP_519342.1| hypothetical protein RSc1221 [Ralstonia solanacearum GMI1000] gi|17428235|emb|CAD14923.1| putative gtpase protein [Ralstonia solanacearum GMI1000] Length = 417 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 70/168 (41%), Gaps = 9/168 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A+ T + R + E +V DT G Sbjct: 203 SVSLVGYTNAGKSTLFNALTKARAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRD 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ + +L EI IL++N Sbjct: 263 LPTQLVAAFRATLEETVHADVLLHVVDAASAVKHEQME-QVDRVLAEINASDIPQILVMN 321 Query: 139 KIDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 KID E L Q I + VSA +G G + + L T Sbjct: 322 KIDAA--EELRSQGPRIERDEAGAVRRVFVSALEGAGLELLREALVET 367 >gi|134295839|ref|YP_001119574.1| GTP-binding protein EngA [Burkholderia vietnamiensis G4] gi|166224317|sp|A4JEN6|DER_BURVG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134138996|gb|ABO54739.1| small GTP-binding protein [Burkholderia vietnamiensis G4] Length = 445 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVATDFYELGLGDPRAISAAHGDGVTDMIN 157 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 13/184 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D SR +A+VG N GKSTLVN +G I TTR + + +D Sbjct: 174 NDPSRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLID 233 Query: 77 TPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ ++ K + + +I A++V L++D+ +++ + + ++ L Sbjct: 234 TAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDAHIAGFVVEQGRAL 293 Query: 134 ILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLC 183 ++ +NK D + R +A++ KL F++ K+ +SA K G DD Sbjct: 294 VIGVNKWDGLDDHARDRAKADLTRKLKFLDFAKSHYISAAKKTGIGALMRSVDDAYAAAM 353 Query: 184 STLP 187 + LP Sbjct: 354 AKLP 357 >gi|317121946|ref|YP_004101949.1| ribosome-associated GTPase EngA [Thermaerobacter marianensis DSM 12885] gi|315591926|gb|ADU51222.1| ribosome-associated GTPase EngA [Thermaerobacter marianensis DSM 12885] Length = 455 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--- 80 VA+VG N GKS+LVNR +G + +V+ TTR V + E F+DT G+ Sbjct: 188 AVAIVGRPNVGKSSLVNRLLGEERVVVSDIPGTTRDAVDVLWRRGERVFRFIDTAGLRRK 247 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-ILILNK 139 KD + + AD+ CLV+D+ R+ + + +A + +L +NK Sbjct: 248 SRVKDDVEFYSTLRTQRALARADVACLVLDA-RDPATDQDKRIAGMALEEGKACVLAVNK 306 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM-------VSATKGHGCDDVLNYL 182 D V R + A+ + ++ E F+ +SA G D ++ ++ Sbjct: 307 WDLVA--RGPDTADQYREALYREYDFLQFAPIVFLSALTGQRIDRLVEWI 354 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 4/163 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL NR + +++I TR + +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNRIIERRLAIEDDVPGVTRDRLYADTDWAGRAFTLVDTGGLAEGD 64 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + R + ++ AD++ +VVD + ++ + + + IL +NK+D Sbjct: 65 DPLTVQVRRQVEAAVREADVLVMVVDGQAGVTPADEEVARLLRQAQKPTILAVNKVD--- 121 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + + + + V+A G D+L+ + LP Sbjct: 122 -DPHWDGVQYDFFRLGLGEPIPVAAGPGRNVGDLLDAVVRALP 163 >gi|302808277|ref|XP_002985833.1| hypothetical protein SELMODRAFT_123195 [Selaginella moellendorffii] gi|300146340|gb|EFJ13010.1| hypothetical protein SELMODRAFT_123195 [Selaginella moellendorffii] Length = 492 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 15/181 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-FLD 76 + R VA++G N GKS+++N VG + +IV+ TTR + V+ E ++ +D Sbjct: 205 EGDRPLSVAIIGRPNVGKSSILNAIVGKERTIVSPVSGTTRDAIDTEVTGPEGKVFRLID 264 Query: 77 TPG------IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 T G I + L ++ + I+ AD+V LV+++ + L + I K Sbjct: 265 TAGIRKRAAIASGGSKTESLCVQSALRAIRRADVVALVIEAMTCATEQDYRLGERIEKDG 324 Query: 131 SRLILILNKIDCVKPERLLEQA-----EIANKLVFIEKTFMV--SATKGHGCDDVLNYLC 183 I+++NK D V P++ E ++ KL ++ +V SAT G +L Sbjct: 325 KACIIVVNKWDTV-PDKNAESTYWYDMDVREKLRVLKWAPIVYTSATSGQRVQKILATAL 383 Query: 184 S 184 S Sbjct: 384 S 384 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 31/188 (16%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR VG ++IV + TR + G V + + +DT G+ Sbjct: 12 VAIVGRPNVGKSALFNRIVGRNMAIVHDEPGVTRDRLYGRVRGSVQEFMLIDTGGVLTIP 71 Query: 85 DSYH-----------------------KLMIRLSWSTIKHADIVCLVVDSHREL---KVN 118 S ++ + + S ++ A + VVD L + Sbjct: 72 TSAESGLAGGSVAAAQAKKDAAAAGLPSMIEQQAASAVEEACALVFVVDGQAGLTSADIE 131 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 I + L+ K ++ L +NK C P++ L QA L F VSA G G D+ Sbjct: 132 IGNWLRRKFKH-KKIALAVNK--CESPKKGLLQAAEFWSLGFTP--VPVSAISGSGVPDL 186 Query: 179 LNYLCSTL 186 L + S + Sbjct: 187 LEDVTSAI 194 >gi|296532289|ref|ZP_06895028.1| ribosome-associated GTPase EngA [Roseomonas cervicalis ATCC 49957] gi|296267365|gb|EFH13251.1| ribosome-associated GTPase EngA [Roseomonas cervicalis ATCC 49957] Length = 445 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKSTL NR G K++IV TR ++ LDT G+ A Sbjct: 5 IAIIGRPNVGKSTLFNRLAGRKLAIVDDTPGVTRDRKETEARLGGRAVLLLDTAGLEEAP 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ M S + I+ AD+V VVD+ + + + ++S ++L+ NK + Sbjct: 65 PDTVAGRMRASSEAAIRDADLVLFVVDARAGITPSDRAFAAWLRRQSVPVLLVANKTE 122 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 8/135 (5%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR-GIVSEKESQIVF 74 +D SR +A+VG NAGKSTL+N +G + I + TR V E ++ Sbjct: 171 ARDRSRPLRLAIVGRPNAGKSTLLNALLGEERMITGPEPGLTRDAVAVEWTDETGGKVRL 230 Query: 75 LDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRS 130 +DT G+ + ++ + + + +K A+ LV+D++ L ++ DL + +A+R Sbjct: 231 VDTAGMRKKARIIEGLEQMSVAATIAALKEAEAAILVLDAN--LGMDEQDLRIARLAERE 288 Query: 131 SRLILI-LNKIDCVK 144 R ++I NK D V+ Sbjct: 289 GRAVIIAFNKWDAVE 303 >gi|256832504|ref|YP_003161231.1| small GTP-binding protein [Jonesia denitrificans DSM 20603] gi|256686035|gb|ACV08928.1| small GTP-binding protein [Jonesia denitrificans DSM 20603] Length = 490 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 56 VLAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYPAEWAGRDFMLVDTGGWEAD 115 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + I AD V VVDS +++ + + ++L NK+D Sbjct: 116 VLGIDASVAQQAEVAINLADAVIFVVDSTVGATATDERVVRLLRQSGKPVVLCANKVDSF 175 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E A + + + + VSA G G D+L+ LP Sbjct: 176 K----AEADATALWSLGLGEPYPVSALHGRGTGDLLDAAMKALP 215 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 11/151 (7%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 M + +EH D R VALVG N GKS+L+N+ +V TTR V Sbjct: 211 MKALPRISEHGTVRPDGPRR--VALVGRPNVGKSSLLNKVAHENRVVVDDTAGTTRDPVD 268 Query: 63 GIVSEKESQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK 116 ++ K +F+DT GI D Y L + + I+ A++ +++D+ + Sbjct: 269 ELIELKGRPWIFVDTAGIRRRVHMMKGADYYASLR---TVAAIEKAEVAVILLDASTTVS 325 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPER 147 ++ + +++ NK D V +R Sbjct: 326 EQDQRIISSVVDSGRAVVVAFNKWDLVDEDR 356 >gi|220904745|ref|YP_002480057.1| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869044|gb|ACL49379.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 454 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 11/174 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G NAGKS+L+N G + IV+ TTR V VF+DT G+ Sbjct: 193 LAMLGRPNAGKSSLINALSGEERMIVSDVAGTTRDSVDVRFCRNGKDYVFVDTAGVRRRT 252 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS K + + + AD+ L +D+ + L+ + R + ++++NK D Sbjct: 253 KITDSVEKYSVNSAIKSSTKADVTLLTLDAAEGVSQQDKRLMDMLNTRKTPFMVLINKCD 312 Query: 142 CVKPERLLEQAE--IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 + P L+Q + I+ L F ++ + G D L LPLA ++ Sbjct: 313 -LAPRNALDQLKKNISQMLAFCPHVPVMPVSALTGKD-----LEKILPLAQRIH 360 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 16/175 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIF-- 81 + LVG N GKSTL NR + + +I + TR + G+V K +DT GI Sbjct: 8 IILVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRRKGLPAFGIVDTGGITLD 67 Query: 82 ---------NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 + + ++ + + +K A V VVD L L + ++ Sbjct: 68 AHAMVVEGPEGIRGFEQDILDQTEAAMKDAAAVAFVVDGRDGLLPLDEHLAAHVRRKGLP 127 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 I ++NK+D ER E ++A + VSA GH ++ L LP Sbjct: 128 TICVVNKVDGA--ER--EDEQLAEFHILGFPLLAVSAEHGHNIRALVEDLADLLP 178 >gi|304373365|ref|YP_003856574.1| tRNA modification GTPase mnmE [Mycoplasma hyorhinis HUB-1] gi|304309556|gb|ADM22036.1| tRNA modification GTPase mnmE [Mycoplasma hyorhinis HUB-1] Length = 444 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 4/92 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 VALVG N GKS+L+N + SIV+ TTR +V S S IVF +DT G+ Sbjct: 220 VALVGTPNVGKSSLLNALIEQDKSIVSDVAGTTRDVVEA--SFVLSDIVFKLVDTAGVRK 277 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE 114 AK+ ++ I+ S I+ A IV ++D+ ++ Sbjct: 278 AKNKIEQIGIKKSLEQIEKASIVIHIIDATKQ 309 >gi|257791363|ref|YP_003181969.1| GTP-binding proten HflX [Eggerthella lenta DSM 2243] gi|257475260|gb|ACV55580.1| GTP-binding proten HflX [Eggerthella lenta DSM 2243] Length = 436 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 77/176 (43%), Gaps = 14/176 (7%) Query: 16 VQDNSR--SGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 VQ SR SG VAL G TNAGKS+L+NR A V T S R + + Sbjct: 206 VQRESRYESGMFKVALAGYTNAGKSSLLNRLTNADVLAYDKLFATLDSTTRKFELPEGRE 265 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIA 127 I DT G + + + I AD+V VVD S E + I D+L +I Sbjct: 266 ITVTDTVGFIQKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIH 325 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + +L+ NK D + ERL A K + F VSA G G +++ ++ Sbjct: 326 AQDLSRVLVFNKCDLLGEERL-----GALKARHPQAQF-VSAATGEGVGELVEHVA 375 >gi|170750287|ref|YP_001756547.1| small GTP-binding protein [Methylobacterium radiotolerans JCM 2831] gi|170656809|gb|ACB25864.1| small GTP-binding protein [Methylobacterium radiotolerans JCM 2831] Length = 448 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V + TR G V+ + +DT G+ A Sbjct: 5 TVAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDVAFGGLEFRVIDTAGLEEA 64 Query: 84 KDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNK 139 + +R+ + + I AD+V V+D+ R + E+ +R+ +ILI NK Sbjct: 65 DAASLTGRMRMQTEAAILAADVVLFVIDA-RAGVLPADQPFAELVRRAGCPVILIANK 121 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 8/173 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 R+ VA+VG NAGKSTL+NR +G +V + TR + + +I DT Sbjct: 178 GGRALKVAIVGRPNAGKSTLINRMLGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTA 237 Query: 79 GI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 G+ D KL + ++ A++V +++D+ + ++ + L++ Sbjct: 238 GMRRRARIDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQDLTIVDLVESEGRALVI 297 Query: 136 ILNKIDCV--KPERLLEQAEIANKLVFIEKTFMV---SATKGHGCDDVLNYLC 183 LNK D V +P L + E +L+ + V S G G D ++ + Sbjct: 298 GLNKWDLVADQPGLLKQLREDCTRLLPQVRGVAVVPLSGLAGDGVDKLMQAVV 350 >gi|122702551|emb|CAL88465.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALNL 168 >gi|194365440|ref|YP_002028050.1| GTP-binding protein EngA [Stenotrophomonas maltophilia R551-3] gi|238693498|sp|B4SSW8|DER_STRM5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194348244|gb|ACF51367.1| small GTP-binding protein [Stenotrophomonas maltophilia R551-3] Length = 465 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFN 82 VALVG N GKST+ N + ++V + TR G+ ++++ + +DT GI Sbjct: 4 LVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVVDTGGIAE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ R + + AD++ VVD+ ++L + K S +L++NKID Sbjct: 64 EEEGLAGATTRQARAAAAEADLILFVVDARDGSSAMDDEILAWLRKLSRPTLLLINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + ++E A + F E VSA G DD+L + LP Sbjct: 124 TDEDSV--RSEFA-RYGFSE-MLTVSAAHRQGLDDLLEEVVQRLP 164 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + + +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRILGEERMIASDVPGTTRDSIAVDLERDGREYRLIDTAGLRRRS 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + +I+ + L++D+ + +L + L++ +NK D Sbjct: 241 RVDEVVEKFSVVKTMQSIEQCQVAVLMLDATEGVTDQDATVLGAVLDAGRALVIAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFI--EKTFMVSATKGHGCDDVL 179 + E EQAE ++ +L F+ ++ +SA G G ++ Sbjct: 301 GLT-EYQREQAETMLSLRLGFVPWAESVRISAKHGSGLRELF 341 >gi|308802255|ref|XP_003078441.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri] gi|116056893|emb|CAL53182.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri] Length = 496 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 2/161 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VGA N GKS+++N G +IV+ + TTR ++ + +++ DT GI Sbjct: 249 VAIVGAPNVGKSSMLNALAGRDAAIVSPRAGTTRDVLEISLELNGYKVIVSDTAGIRETD 308 Query: 85 DSYHKLMIRLSWSTIKHADI-VCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K+ + + + AD+ V L S D L + +I + NK D + Sbjct: 309 DDVEKMGVARALERARDADVLVALADASSDASSDAARDALSTVDVTGKDVITVWNKSDVI 368 Query: 144 KPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 R E A + + +VSA G G DD + L Sbjct: 369 DAARARELDARVDDITRRGGDARVVSARDGRGVDDFIATLA 409 >gi|261406202|ref|YP_003242443.1| GTP-binding proten HflX [Paenibacillus sp. Y412MC10] gi|261282665|gb|ACX64636.1| GTP-binding proten HflX [Paenibacillus sp. Y412MC10] Length = 430 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Query: 21 RSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +SG V ALVG TNAGKSTL+NR A V I T R + ++V DT Sbjct: 204 KSGAVQVALVGYTNAGKSTLLNRLTAADVYIENQLFATLDPTSRVLELPSGKEVVLTDTV 263 Query: 79 GIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSR 132 G ++ H L+ R + AD++ VVD+ ++ + +L+++ Sbjct: 264 GFI--QNLPHDLVAAFRATLEEANEADLILHVVDASSPMRDEQMAVVQSILQDLGASDKP 321 Query: 133 LILILNKIDCVKPERL 148 I++ NK D +P +L Sbjct: 322 QIVLFNKKDACEPGQL 337 >gi|239978699|ref|ZP_04701223.1| GTP-binding protein EngA [Streptomyces albus J1074] gi|291450591|ref|ZP_06589981.1| GTP-binding protein engA [Streptomyces albus J1074] gi|291353540|gb|EFE80442.1| GTP-binding protein engA [Streptomyces albus J1074] Length = 487 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 50 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGGWEQD 109 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I AD V VVD+ +++ + K ++L NK+D Sbjct: 110 VLGIDASVAAQAEYAIDAADAVVFVVDATVGATDTDAAVVRLLRKAGKPVVLCANKVDGP 169 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A + L E VSA G G D+L+ + LP AP Sbjct: 170 SAE---ADAAMLWSLGLGEP-HPVSALHGRGTGDMLDAVIEALPDAP 212 >gi|122702225|emb|CAL88303.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 KD+ I+ L+ + ++++ VVD L +E+ K + L++NKID Sbjct: 67 KDALLSKEIKALNLKAAQMSNLILYVVDGKSIPGDEDLKLFREVFKINPNCFLVINKIDN 126 Query: 143 VK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ER + + K+F +S + G +++ + S L L Sbjct: 127 DKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILSVLNL 168 >gi|122702177|emb|CAL88279.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K + I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KGALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|120437317|ref|YP_863003.1| GTP-binding protein EngA [Gramella forsetii KT0803] gi|166198719|sp|A0M5P1|DER_GRAFK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|117579467|emb|CAL67936.1| GTP-binding protein EngA [Gramella forsetii KT0803] Length = 434 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 11/167 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKST NR + + +I+ TR G + +DT G Sbjct: 5 VAIVGRPNVGKSTFFNRLIQRREAIIDSVSGVTRDRHYGKSDWNGKKFSLIDTGGYVKGS 64 Query: 85 DSYHKLMIRLSWS-TIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKI 140 D + I I AD + +VD + + +LL+ + K ++L +NK+ Sbjct: 65 DDIFEAEIDKQVELAIDEADAIIFIVDVESGVTSMDEEVANLLRRVNK---PVLLAVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D K RL E + + + + F +++T G G D+L+ L LP Sbjct: 122 DNNK--RLANAVEFYS--LGLGEYFPIASTNGSGTGDLLDALIEALP 164 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 5/125 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRKSK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K++ + S I++ D+ +V+D+ R + ++ +A+R+ + I+IL NK D Sbjct: 238 VKENLEFYSVMRSVRAIENCDVCLVVLDATRGFDGQVQNIF-WLAQRNHKGIVILVNKWD 296 Query: 142 CVKPE 146 V E Sbjct: 297 LVDKE 301 >gi|78776726|ref|YP_393041.1| tRNA modification GTPase TrmE [Sulfurimonas denitrificans DSM 1251] gi|123550691|sp|Q30T75|MNME_SULDN RecName: Full=tRNA modification GTPase mnmE gi|78497266|gb|ABB43806.1| tRNA modification GTPase trmE [Sulfurimonas denitrificans DSM 1251] Length = 446 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N + +IV+ TTR + V I +DT GI A Sbjct: 218 VAIIGKPNVGKSSLLNALLNYNRAIVSDIAGTTRDTIEEQVKIGTHLIRIVDTAGIREAS 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLIL-ILNKIDC 142 D ++ I S I +DIV + D+ R +L I +K S+ +L + NKID Sbjct: 278 DEIERIGIERSLEAINESDIVIALFDASRVADYEDEQILSLIESKAGSKNVLHVKNKIDL 337 >gi|18977549|ref|NP_578906.1| gtp1/obg family GTP-binding protein [Pyrococcus furiosus DSM 3638] gi|18893260|gb|AAL81301.1| GTP-binding protein, gtp1/obg family [Pyrococcus furiosus DSM 3638] Length = 431 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 40/201 (19%) Query: 24 CVALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 VAL G TNAGKSTL+N G AK + T TTR G ++ DT G Sbjct: 188 LVALAGYTNAGKSTLLNALTGENVEAKNQMFTTLDTTTRRFKLG-----GKLLLITDTVG 242 Query: 80 IFNAKDSYHKLMIRLSWSTIKH---ADIVCLVVDS-------HRELKVNIHDLLKEIAKR 129 D+ ++ ST++ ADI+ LV+DS R+ ++ ++L+E+ Sbjct: 243 FI---DNLPPFIVEAFHSTLEEIVKADIIVLVLDSSEAWPEIRRKFFASL-NVLRELKAL 298 Query: 130 SSRLILILNKIDCVKPE----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 +I+ LNKID V PE + + EIA+ V + + +SA G +L L + Sbjct: 299 ERPMIIALNKIDKVTPEDAETKKMLLKEIADGRVNLVEVVKISAKNG-----ILEELYTA 353 Query: 186 LPLAPWVYSADQISDLPMFHF 206 L A + LP F F Sbjct: 354 LEKA--------LLKLPKFQF 366 >gi|255525914|ref|ZP_05392841.1| small GTP-binding protein [Clostridium carboxidivorans P7] gi|255510408|gb|EET86721.1| small GTP-binding protein [Clostridium carboxidivorans P7] Length = 411 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL G NAGKS+++N G ++++V+ K TT + + + +V +DT G+ + Sbjct: 15 IALFGKRNAGKSSIINALTGQEIALVSEVKGTTTDPVYKAMEILPIGPVVLIDTAGL-DD 73 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC- 142 + +L + + + D+ LV+D+ + D+L +I R +I LNK D Sbjct: 74 EGELGELRKKKAMEVLTKTDVAILVIDAEIGVTDFDKDILSKIRGRKIPVIGALNKTDIN 133 Query: 143 -VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + L +E+ N+L K VSA G D + N L +P Sbjct: 134 NINADAL---SEMQNQLDL--KLIPVSAVSNKGIDLIKNELIKIVP 174 >gi|241889489|ref|ZP_04776788.1| ribosome-associated GTPase EngA [Gemella haemolysans ATCC 10379] gi|241863796|gb|EER68179.1| ribosome-associated GTPase EngA [Gemella haemolysans ATCC 10379] Length = 435 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKST+ N+ +G ++SIV TR + +DT GI Sbjct: 5 TVAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + + I AD++ + + + + ++ + + K ++L +NKID Sbjct: 65 DTPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVARLLYKTDKPVVLAVNKIDNF 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ L F + F +S + G G D+L+ +C Sbjct: 125 DMNHMIYDFY---SLGFGD-PFPISGSHGLGIGDLLDEVCKNF 163 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+L+N +G + I + TTR + + V +DT GI Sbjct: 178 SLIGRPNVGKSSLINTILGEERVIASDIAGTTRDAIDTDFKHNGDEYVVIDTAGIRKRGK 237 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + S I+ +D+V +V+++ + + + +I+++NK D Sbjct: 238 VYESCEKYSVLRSLKAIERSDVVLVVLNAEEGIIEQDKKVAGYAHESGKGVIIVVNKWDA 297 Query: 143 V 143 + Sbjct: 298 I 298 >gi|213691733|ref|YP_002322319.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523194|gb|ACJ51941.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457827|dbj|BAJ68448.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 501 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L NR G+ + T + VR + ++DT G Sbjct: 282 TVAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRR 341 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE--LKVN-IHDLLKEIAKRSS-RLILILN 138 + + + + AD++ VVD SH + +V+ ++D+L +I +S IL+ N Sbjct: 342 LPTQLVEAFKSTLEEVAEADVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFN 401 Query: 139 KIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K D ERL F+VSA G G D++ + S LP+ Sbjct: 402 KADQADETTRERL---------AALQPDAFIVSAYTGEGLDELRTAVESLLPV 445 >gi|25011707|ref|NP_736102.1| GTP-binding protein EngA [Streptococcus agalactiae NEM316] gi|41017045|sp|Q8E3T9|DER_STRA3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24413247|emb|CAD47326.1| Unknown [Streptococcus agalactiae NEM316] Length = 436 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + + +DT GI + Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDV 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + AD++ VV S +E + + + I ++++ +IL +NK+D Sbjct: 65 DAPFMEQIKHQADIAMTEADVIVFVV-SGKEGVTDADEYVSLILYKTNKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 PE + + + + + + +S+ G G D+L+ + LP+ Sbjct: 123 -NPEMRNDIYDFYS--LGLGDPYPLSSVHGIGTGDILDAIVENLPV 165 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 17/142 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEK 68 NE+ D ++ +L+G N GKS+L+N +G I + TTR +I V + Sbjct: 169 NENPDIIR-------FSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQ 221 Query: 69 ESQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDL 122 + +DT G+ + Y K + S I +D+V +V+++ RE I Sbjct: 222 GQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDVVLMVINAEEGIREYDKRIAGF 281 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 E K +I+++NK D ++ Sbjct: 282 AHEAGK---GIIIVVNKWDTIE 300 >gi|323143788|ref|ZP_08078456.1| ribosome biogenesis GTPase Der [Succinatimonas hippei YIT 12066] gi|322416501|gb|EFY07167.1| ribosome biogenesis GTPase Der [Succinatimonas hippei YIT 12066] Length = 568 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK- 84 ALVG N GKSTL NR +G +V TTR + + + + + +DT G+ + Sbjct: 244 ALVGKPNVGKSTLTNRLLGEDRVVVCDMPGTTRDSIYIPLEREHKKYIVIDTAGVRKRRK 303 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ K I + I+ ++ LV+D+ + LL I L++ +NK D Sbjct: 304 VSEAIEKFSIVKTLKAIEDCNVAVLVIDARENITDQDLSLLGFILDSGRSLVIAVNKWDG 363 Query: 143 VKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 + E + + E+ +L F++ + +SA G G ++ + Sbjct: 364 LSKEYKDDIRRELNLRLGFVDFARVHFISALHGTGVGNIFD 404 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKSTL NR + ++V TR G + + +DT GI AK Sbjct: 4 VALVGCPNVGKSTLFNRLTKTRDALVADFPGLTRDRKYGRALFDGREYIVIDTGGI--AK 61 Query: 85 DSYH-----KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 D+ M + I+ D+V +VD+ + + + + I K + ++ NK Sbjct: 62 DAEQPSDLTSKMTEQALLAIEECDLVLFMVDARAGIMPGDYQVAEYIRKSGKKCAVVANK 121 Query: 140 IDCVKPE 146 ID + P+ Sbjct: 122 IDGLDPD 128 >gi|319651358|ref|ZP_08005487.1| GTP-binding protein EngA [Bacillus sp. 2_A_57_CT2] gi|317396889|gb|EFV77598.1| GTP-binding protein EngA [Bacillus sp. 2_A_57_CT2] Length = 436 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGI-DI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D IRL I AD++ +V+ + ++ K + K ++L +NKID Sbjct: 64 GDEPFLEQIRLQAEIAIDEADVIIFLVNGREGVTSADEEVAKILYKAKKPVVLGVNKID- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + + L F E F +S + G G D+L+ P Sbjct: 123 -NPE-MRDLVYDFYALGFGE-PFPISGSHGLGLGDLLDEAAKHFP 164 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 6/133 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR + V + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNAMLGEERVIVSNIAGTTRDAIDSKVKVDGQEYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 Y K + + I+ +D+V +V+D + + + A + R +++++NK D Sbjct: 239 VYETTEKYSVLRALRAIERSDVVLVVIDGEEGI-IEQDKRIAGYAHEAGRAVVIVVNKWD 297 Query: 142 CV-KPERLLEQAE 153 V K ER ++ E Sbjct: 298 AVEKDERTMKAFE 310 >gi|297796713|ref|XP_002866241.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297312076|gb|EFH42500.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] Length = 541 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+LVG TNAGKSTL+N+ GA V T R + + + + DT G Sbjct: 313 VSLVGYTNAGKSTLLNQLTGANVLAENRLFATLDPTTRRVQMQNGKEFLLTDTVGFIQKL 372 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILILNKI 140 + R + I + ++ VVD L + ++ E+ S +++ NK+ Sbjct: 373 PTTLVAAFRATLEEIAESSLLVHVVDISHPLAEQQIEAVEKVMSELDVSSIPKLVVWNKV 432 Query: 141 DCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D V P+++ +AE + T +SA G G DD N Sbjct: 433 DRVDDPQKVKLEAEKSG------DTICISALTGEGLDDFCN 467 >gi|260893107|ref|YP_003239204.1| small GTP-binding protein [Ammonifex degensii KC4] gi|260865248|gb|ACX52354.1| small GTP-binding protein [Ammonifex degensii KC4] Length = 425 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL G NAGKS+L+N G +V+IV+ TT + + + ++ +DT GI + Sbjct: 14 IALFGRRNAGKSSLINALTGQEVAIVSDVPGTTTDPVAKAMEILPLGPVMIIDTAGIDDV 73 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L ++ S+ + D+ LV+D R ++LK + ++ ++NKID + Sbjct: 74 GE-LGALRVKKSFEVLNRTDLALLVIDPGRGFGPYEEEVLKRCEEYKVPVVTVINKID-L 131 Query: 144 KPE--RLLEQAEIANKLVFI 161 PE R E+A+ VF+ Sbjct: 132 YPEVVRNGLGVELASPKVFV 151 >gi|88810613|ref|ZP_01125870.1| GTP-binding protein EngA [Nitrococcus mobilis Nb-231] gi|88792243|gb|EAR23353.1| GTP-binding protein EngA [Nitrococcus mobilis Nb-231] Length = 476 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+NR +G + +V + TTR + +DT G+ Sbjct: 185 VAIVGRPNVGKSTLINRLLGEERVLVHDQPGTTRDSIFIPFERDGFAYTLIDTAGMRRRS 244 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + A +V L++D+H + ++ + L+L +NK D Sbjct: 245 RVYEAVEKFSAIKTLQAVTAAQVVILLLDAHESITEQDVRIIGYVLDAGRALVLAVNKWD 304 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGC 175 ++P R + + + KL F++ K + +SA G G Sbjct: 305 GLEPSRREQIRRGLERKLGFLDFAKLYFISALYGTGV 341 >gi|15608851|ref|NP_216229.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Rv] gi|15841173|ref|NP_336210.1| GTP-binding protein EngA [Mycobacterium tuberculosis CDC1551] gi|31792900|ref|NP_855393.1| GTP-binding protein EngA [Mycobacterium bovis AF2122/97] gi|121637621|ref|YP_977844.1| GTP-binding protein EngA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661511|ref|YP_001283034.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra] gi|148822919|ref|YP_001287673.1| GTP-binding protein EngA [Mycobacterium tuberculosis F11] gi|167967183|ref|ZP_02549460.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra] gi|215403983|ref|ZP_03416164.1| GTP-binding protein EngA [Mycobacterium tuberculosis 02_1987] gi|215411361|ref|ZP_03420169.1| GTP-binding protein EngA [Mycobacterium tuberculosis 94_M4241A] gi|215445899|ref|ZP_03432651.1| GTP-binding protein EngA [Mycobacterium tuberculosis T85] gi|218753421|ref|ZP_03532217.1| GTP-binding protein EngA [Mycobacterium tuberculosis GM 1503] gi|224990096|ref|YP_002644783.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253799248|ref|YP_003032249.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 1435] gi|254231909|ref|ZP_04925236.1| GTP-binding protein engA [Mycobacterium tuberculosis C] gi|254364552|ref|ZP_04980598.1| GTP-binding protein engA [Mycobacterium tuberculosis str. Haarlem] gi|254550724|ref|ZP_05141171.1| GTP-binding protein EngA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186666|ref|ZP_05764140.1| GTP-binding protein EngA [Mycobacterium tuberculosis CPHL_A] gi|260204983|ref|ZP_05772474.1| GTP-binding protein EngA [Mycobacterium tuberculosis K85] gi|289447328|ref|ZP_06437072.1| GTP-binding protein engA [Mycobacterium tuberculosis CPHL_A] gi|289554514|ref|ZP_06443724.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 605] gi|289574381|ref|ZP_06454608.1| GTP-binding protein engA [Mycobacterium tuberculosis K85] gi|289745849|ref|ZP_06505227.1| GTP-binding protein engA [Mycobacterium tuberculosis 02_1987] gi|289757822|ref|ZP_06517200.1| GTP-binding protein [Mycobacterium tuberculosis T85] gi|289761869|ref|ZP_06521247.1| GTP-binding protein engA [Mycobacterium tuberculosis GM 1503] gi|294993177|ref|ZP_06798868.1| GTP-binding protein EngA [Mycobacterium tuberculosis 210] gi|297634266|ref|ZP_06952046.1| GTP-binding protein EngA [Mycobacterium tuberculosis KZN 4207] gi|297731253|ref|ZP_06960371.1| GTP-binding protein EngA [Mycobacterium tuberculosis KZN R506] gi|298525211|ref|ZP_07012620.1| GTP-binding protein engA [Mycobacterium tuberculosis 94_M4241A] gi|306775899|ref|ZP_07414236.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu001] gi|306779717|ref|ZP_07418054.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu002] gi|306788817|ref|ZP_07427139.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu004] gi|306793153|ref|ZP_07431455.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu005] gi|306797532|ref|ZP_07435834.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu006] gi|306803413|ref|ZP_07440081.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu008] gi|306967812|ref|ZP_07480473.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu009] gi|306972008|ref|ZP_07484669.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu010] gi|307084298|ref|ZP_07493411.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu012] gi|313658585|ref|ZP_07815465.1| GTP-binding protein Der [Mycobacterium tuberculosis KZN V2475] gi|54037050|sp|P64058|DER_MYCBO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040974|sp|P64057|DER_MYCTU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225826|sp|A1KJD0|DER_MYCBP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225827|sp|A5U372|DER_MYCTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783160|sp|C1ANY6|DER_MYCBT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2326756|emb|CAB10970.1| PROBABLE GTP-BINDING PROTEIN ENGA [Mycobacterium tuberculosis H37Rv] gi|13881394|gb|AAK46024.1| GTP-binding protein [Mycobacterium tuberculosis CDC1551] gi|31618491|emb|CAD94443.1| PROBABLE GTP-BINDING PROTEIN ENGA [Mycobacterium bovis AF2122/97] gi|121493268|emb|CAL71739.1| Probable GTP-binding protein engA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600968|gb|EAY59978.1| GTP-binding protein engA [Mycobacterium tuberculosis C] gi|134150066|gb|EBA42111.1| GTP-binding protein engA [Mycobacterium tuberculosis str. Haarlem] gi|148505663|gb|ABQ73472.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra] gi|148721446|gb|ABR06071.1| GTP-binding protein engA [Mycobacterium tuberculosis F11] gi|224773209|dbj|BAH26015.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253320751|gb|ACT25354.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 1435] gi|289420286|gb|EFD17487.1| GTP-binding protein engA [Mycobacterium tuberculosis CPHL_A] gi|289439146|gb|EFD21639.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 605] gi|289538812|gb|EFD43390.1| GTP-binding protein engA [Mycobacterium tuberculosis K85] gi|289686377|gb|EFD53865.1| GTP-binding protein engA [Mycobacterium tuberculosis 02_1987] gi|289709375|gb|EFD73391.1| GTP-binding protein engA [Mycobacterium tuberculosis GM 1503] gi|289713386|gb|EFD77398.1| GTP-binding protein [Mycobacterium tuberculosis T85] gi|298495005|gb|EFI30299.1| GTP-binding protein engA [Mycobacterium tuberculosis 94_M4241A] gi|308215649|gb|EFO75048.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu001] gi|308327367|gb|EFP16218.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu002] gi|308334633|gb|EFP23484.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu004] gi|308338420|gb|EFP27271.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu005] gi|308342143|gb|EFP30994.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu006] gi|308349930|gb|EFP38781.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu008] gi|308354551|gb|EFP43402.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu009] gi|308358528|gb|EFP47379.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu010] gi|308366087|gb|EFP54938.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu012] gi|323719804|gb|EGB28918.1| GTP-binding protein engA [Mycobacterium tuberculosis CDC1551A] gi|326903328|gb|EGE50261.1| GTP-binding protein engA [Mycobacterium tuberculosis W-148] gi|328459000|gb|AEB04423.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 4207] Length = 463 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 4/172 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + ++ + VA+VG N GKSTLVNR +G + ++V TR V + V Sbjct: 20 IAESGAAPVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQ 79 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DT G +L+ + ++ AD V LVVD+ + + + + L Sbjct: 80 DTGGWEPNAKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFL 139 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D K E + A + + + + + +SA G G D+L+ + + LP Sbjct: 140 AANKVDSEKGES--DAAALWS--LGLGEPHAISAMHGRGVADLLDGVLAALP 187 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 11/193 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ F+DT G+ Sbjct: 202 VALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKV 261 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + + I A++ +++D+ + L ++ + + L+L NK D Sbjct: 262 GQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWD 321 Query: 142 CVKPERL-LEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 V +R L Q EI +LV + + +SA G ++ + LA W +I Sbjct: 322 LVDEDRRELLQREIDRELVQVRWAQRVNISAKTGRAVHKLVPAMEDA--LASW---DTRI 376 Query: 199 SDLPMFHFTAEIT 211 + P+ + E+T Sbjct: 377 ATGPLNTWLTEVT 389 >gi|325104167|ref|YP_004273821.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145] gi|324973015|gb|ADY51999.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145] Length = 455 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 8/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + G N GKSTL+N + + +IV+ TTR + ++ K F+DT GI + Sbjct: 223 VVIAGKPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINVKGVIFRFIDTAGIRETQ 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + + IK A ++ + D ++ + + L E+ + +L++NK D + Sbjct: 283 DVIEAKGVERTLEKIKQARLLVYLADPIQDDFAAVKEQLDEVKAYNIPYLLVVNKKDLLS 342 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 E++ ++++ +SA G D++ + L + LA Sbjct: 343 AEQIEAYSQLS--------PLFISAKNNLGVDELKDRLLEIVNLA 379 >gi|299067272|emb|CBJ38469.1| GTP-binding protein hflX, GTPase activity [Ralstonia solanacearum CMR15] Length = 417 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A+ T + R + E +V DT G Sbjct: 203 SVSLVGYTNAGKSTLFNALTKARAYAANQLFATLDTTSRRLYLEGLGNVVLSDTVGFIRD 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ + +L EI IL++N Sbjct: 263 LPTQLVAAFRATLEETVHADVLLHVVDAASAVKHEQME-QVDRVLAEINASDIPQILVMN 321 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 KID + R + I + VSA +G G + + L T Sbjct: 322 KIDAAEELR-TQGPRIERDEAGAVRRVFVSALEGAGLELLREALVET 367 >gi|218673078|ref|ZP_03522747.1| GTP-binding protein EngA [Rhizobium etli GR56] Length = 393 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V TR G +DT G+ A Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEEA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++S M + + I AD+ VVD+ L L + + +R ++L+ NK Sbjct: 64 DEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 22/191 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E ++ + D+++ VA+VG NAGKSTL+NRF+G + + TR + + Sbjct: 190 GEDEEPIYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 249 Query: 70 SQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 I DT G+ + KL + + I+ A+ V +V D+ + ++ + Sbjct: 250 RTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLV 309 Query: 127 AKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + +L NK D + K +RLL QA + +S G G Sbjct: 310 LREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGI-------RAVPISGQTGWG 362 Query: 175 CDDVLNYLCST 185 D ++ + T Sbjct: 363 LDKLMQSIIDT 373 >gi|154508812|ref|ZP_02044454.1| hypothetical protein ACTODO_01321 [Actinomyces odontolyticus ATCC 17982] gi|153798446|gb|EDN80866.1| hypothetical protein ACTODO_01321 [Actinomyces odontolyticus ATCC 17982] Length = 517 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N G + +V TTR V ++ F+DT GI Sbjct: 259 VALVGRPNVGKSSLLNALAGGERVVVNELAGTTRDPVDELIELDGRSWWFVDTAGIRRKM 318 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y + + + I+ A++ +++D L +++++ L+++ N Sbjct: 319 HRTTGADYYASIRTQ---AAIEKAEVALVLIDGSTPLTEQDVRVVQQVIDAGRALVVVTN 375 Query: 139 KIDCVKPERLLEQAEIANKL 158 K D V +R Q EI N+L Sbjct: 376 KWDLVDEDR---QKEIKNEL 392 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V +DT G Sbjct: 83 VLAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWEID 142 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + AD V LV+D+ + + +++ + + +IL NK+D Sbjct: 143 VKGLDRSVAEQAEIAVDLADAVVLVLDATVGVTASDERIVEMLRAKKKPIILAANKVDSP 202 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 L++A+ A + + +SA G G D+L+ + LP Sbjct: 203 -----LQEADAAYLWSLGLGEPHPISALHGRGTGDLLDVVLEVLP 242 >gi|122702543|emb|CAL88461.1| GTPase [Helicobacter pylori] gi|122702749|emb|CAL88564.1| GTPase [Helicobacter pylori] gi|122702757|emb|CAL88568.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 19/170 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID K ER + + K+F +S + G +++ + L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRAL 166 >gi|91203327|emb|CAJ72966.1| similar to GTP-binding protein [Candidatus Kuenenia stuttgartiensis] Length = 446 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 15/183 (8%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP--GIFNAK 84 +VG N GKS L N F ++SIV TR V + K+ +DT GI ++ Sbjct: 8 IVGRPNVGKSALFNCFSRRRISIVEPTSGVTRDRVSTEIRHKDCVFELVDTGGMGITDSD 67 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR----SSRLILILNKI 140 + +++ + + AD+V VVD ++ + L + +A+R +ILI NK+ Sbjct: 68 GLTEDIEMQIEVA-LAAADVVLFVVD----VREGVTPLDRIVAERLRHVKKEVILIANKV 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 D K E + + N+L F E VSA +G+G D+L+ + S PL + D + Sbjct: 123 DTPKFEHSMGE---FNELGFGE-PHPVSAIEGYGRSDLLDKIISLFPLQEPYDNTDSVPI 178 Query: 201 LPM 203 + M Sbjct: 179 MKM 181 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 7/156 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG NAGKSTL+N + IV+ TTR + Q + +DT G+ Sbjct: 181 MAIVGKRNAGKSTLINTLARKQRVIVSEVPGTTRDSIDVKFEMDNKQFLAIDTAGVRKKS 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 KDS + + +I+ AD+V ++D+ ++ L I ++++NK D Sbjct: 241 QVKDSIEFYSMARAERSIRRADVVLFLIDATLKISDVDKKLGAYIDLERKPCVIVINKWD 300 Query: 142 CVKPERLLEQAEIANK----LVFIEKTFMVSATKGH 173 VK E E NK L F+ +F+ + H Sbjct: 301 LVKGIETEEYHEYINKSLPGLSFVPISFISAKNNDH 336 >gi|326803715|ref|YP_004321533.1| ribosome biogenesis GTPase Der [Aerococcus urinae ACS-120-V-Col10a] gi|326651282|gb|AEA01465.1| ribosome biogenesis GTPase Der [Aerococcus urinae ACS-120-V-Col10a] Length = 436 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 AL+G N GKS+LVN +G IV+ TTR V S E +DT GI Sbjct: 179 ALIGRPNVGKSSLVNAILGENRVIVSDIAGTTRDAVDTYFSYNERSFKIIDTAGIRRKGR 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S K + S S I+ A +V LV+++ ++ + + +I+++NK D Sbjct: 239 VSESTEKYSVMRSMSAIEQASVVLLVLNAEEGIRDQDKTVAGYAHEAGKGIIILVNKWDA 298 Query: 143 VKPE 146 +K + Sbjct: 299 LKKD 302 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 16/170 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A+VG N GKST+ NR G ++SIV TR V ++ +DT GI FN Sbjct: 6 IAIVGRPNVGKSTIFNRIAGQRISIVEDVPGVTRDRVYAQGEWLGRKLRLIDTGGIEFN- 64 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCL---VVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 D IRL ++ AD++ + VVD + I LL+ K ++L +NK Sbjct: 65 -DEPFVEQIRLQAEIAVEEADLIIMMTSVVDGVTKTDEMIARLLQ---KSDKPVLLAVNK 120 Query: 140 IDCVKPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +D PE QAEI + + + + +S G G D+L + PL Sbjct: 121 VD--NPEL---QAEIYDFYRLGLNDPYPISGAHGLGIGDLLAEIYRLFPL 165 >gi|56459445|ref|YP_154726.1| GTPase, HflX [Idiomarina loihiensis L2TR] gi|56178455|gb|AAV81177.1| GTPase, HflX [Idiomarina loihiensis L2TR] Length = 428 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR A V T +R + E +++ DT G Sbjct: 199 TVSLVGYTNAGKSTLFNRLTEAGVYAADQLFATLDPTLRKLAVEDIGEVILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILIL 137 + H L+ + + + AD++ VVD E + N + ++L+EI ++I Sbjct: 257 RHLPHDLVAAFKATLQETQEADLLLHVVDVSDEQQQNNIDQVAEVLEEIDAGDVPQLIIC 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID V+ + K + + VSA +G G ++VL L L Sbjct: 317 NKIDQVEGAEPRIDYDDNQKPIRV----WVSAQQGLGIEEVLEALRQIL 361 >gi|293192791|ref|ZP_06609686.1| ribosome-associated GTPase EngA [Actinomyces odontolyticus F0309] gi|292820038|gb|EFF79036.1| ribosome-associated GTPase EngA [Actinomyces odontolyticus F0309] Length = 517 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N G + +V TTR V ++ F+DT GI Sbjct: 259 VALVGRPNVGKSSLLNALAGGERVVVNELAGTTRDPVDELIELDGRSWWFVDTAGIRRKM 318 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y + + + I+ A++ +++D L +++++ L+++ N Sbjct: 319 HRTTGADYYASIRTQ---AAIEKAEVALVLIDGSTPLTEQDVRVVQQVIDAGRALVVVTN 375 Query: 139 KIDCVKPERLLEQAEIANKL 158 K D V +R Q EI N+L Sbjct: 376 KWDLVDEDR---QKEIKNEL 392 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 6/173 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V +DT G Sbjct: 83 VLAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWEID 142 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + AD V LV+D+ + + +++ + + +IL NK+D Sbjct: 143 VKGLDRSVAEQAEIAVDLADAVVLVLDATVGVTASDERIVEMLRAKKKPIILAANKVDSP 202 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA 195 L++A+ A + + +SA G G D+L+ + LP V SA Sbjct: 203 -----LQEADAAYLWSLGLGEPHPISALHGRGTGDLLDVVMEVLPTESAVASA 250 >gi|164685874|ref|ZP_01947569.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177'] gi|165922497|ref|ZP_02219668.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 334] gi|164601391|gb|EAX31811.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177'] gi|165916702|gb|EDR35306.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 334] Length = 452 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 11/130 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G N GKS+L+N G + +IVT TTR I+R + I +DT G Sbjct: 214 REGITVVIAGEPNVGKSSLLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR------L 133 + +D K +R + ++ AD++ L++D+ + + D K IA+ S Sbjct: 274 LRLTEDVVEKEGVRRTQKAVQQADLLLLMIDASKPTE----DFKKIIAQWFSENDNKIPT 329 Query: 134 ILILNKIDCV 143 ++I NKID + Sbjct: 330 LIIENKIDLI 339 >gi|122702423|emb|CAL88402.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISVLIDAILHALGL 168 >gi|220930844|ref|YP_002507753.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10] gi|220001172|gb|ACL77773.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10] Length = 460 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G N GKS+L+N+ G+ +IVT TTR I+ V+ K +DT GI + + Sbjct: 224 IVIAGKPNVGKSSLLNQLSGSTKAIVTDIPGTTRDIIEEYVNIKGIPAKIIDTAGIRSTE 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + + ++ I+ AD++ V+ + + +LK I + S ++++NK D V+ Sbjct: 284 DVVETIGVNRAYEAIESADLIIAVLSADTGVTEEDIQILKMIKNKKS--LILINKTDLVE 341 >gi|118468050|ref|YP_888037.1| GTP-binding protein EngA [Mycobacterium smegmatis str. MC2 155] gi|118169337|gb|ABK70233.1| GTP-binding protein EngA [Mycobacterium smegmatis str. MC2 155] Length = 471 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+NR G S+V TT V ++ F+DT G+ Sbjct: 212 VALVGKPNVGKSSLLNRLAGDHRSVVHDMAGTTVDPVDSLIELGGKTWRFVDTAGLRRKV 271 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + H+ + + I A++V +++D+ + L +L + + L+L NK D Sbjct: 272 GQATGHEFYASVRTHGAIDAAEVVIVLIDASQPLTEQDQRVLSMVIEAGRALVLAFNKWD 331 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL 186 V + R L EI +LV ++ +SA G ++ L ++L Sbjct: 332 LVDEDRRYLLSREIERELVQVQWAPRINISALTGRAVQKLVPALETSL 379 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + + V DT G Sbjct: 37 VLAIVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDANWLGRRFVVQDTGGWEPD 96 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L+ + ++ AD V LVVD+ K + + + L NK+D Sbjct: 97 AKGLQQLVADQALVAMRTADAVILVVDAVVGATAADEAAAKLLRRSGKPVFLAANKVDTE 156 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E A+ A+ + + +SA G G D+L+ + LP Sbjct: 157 RGE-----ADAASLWSLGVGEPHPISAMHGRGVADLLDTVMEKLP 196 >gi|330723738|gb|AEC46108.1| tRNA modification GTPase TrmE [Mycoplasma hyorhinis MCLD] Length = 444 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 4/92 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 VALVG N GKS+L+N + SIV+ TTR +V S S IVF +DT G+ Sbjct: 220 VALVGTPNVGKSSLLNALIEQDKSIVSDVAGTTRDVVEA--SFVLSDIVFKLVDTAGVRK 277 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE 114 AK+ ++ I+ S I+ A IV ++D+ ++ Sbjct: 278 AKNKIEQIGIKKSLEQIEKASIVIHIIDATKQ 309 >gi|259416757|ref|ZP_05740677.1| GTP-binding protein HflX [Silicibacter sp. TrichCH4B] gi|259348196|gb|EEW59973.1| GTP-binding protein HflX [Silicibacter sp. TrichCH4B] Length = 423 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 8/167 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL NR GA V T +R + +++ DT G + Sbjct: 205 VALVGYTNAGKSTLFNRLTGADVMAKDMLFATLDPTMRRVELPDGPEVILSDTVGFISDL 264 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIAKRSSR-LILILNK 139 + R + + AD++ V D SH + + D +L + R LI + NK Sbjct: 265 PTELVASFRATLEEVLAADVILHVRDISHSDTENQAEDVEQILNSLGVDEDRALIEVWNK 324 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ID + E + A + E+ + +SA G G ++LN + L Sbjct: 325 IDQLSEEDADACRQRAER---SEELYAISAITGEGLPELLNDIALKL 368 >gi|85703310|ref|ZP_01034414.1| GTP-binding protein HflX [Roseovarius sp. 217] gi|85672238|gb|EAQ27095.1| GTP-binding protein HflX [Roseovarius sp. 217] Length = 424 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 9/168 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R + + E +++ DT G + Sbjct: 205 VALVGYTNAGKSTLFNRLTGADVMAKDMLFATLDPTMRRVALPEGGPEVILSDTVGFISD 264 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA-KRSSRLILILN 138 + R + + AD++C V D SH E D +L+ + + I I N Sbjct: 265 LPTELVAAFRATLEEVLSADLICHVRDISHPETVSQSRDVAAILESLGVSDKTPQIEIWN 324 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID ++ E +A + + +SA G G +D++ + + L Sbjct: 325 KIDQLEDE---ARAAAVTQAERQDDVLAISAITGQGINDLVAAIGAKL 369 >gi|288958550|ref|YP_003448891.1| GTP-binding protein [Azospirillum sp. B510] gi|288910858|dbj|BAI72347.1| GTP-binding protein [Azospirillum sp. B510] Length = 464 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 10/178 (5%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D S+ +A+VG N GKSTL+N +G + + + TR + ++ + +D Sbjct: 192 EDLSKPIQIAIVGRPNVGKSTLLNSLLGEERVLTGPEAGMTRDAITVDWEWRDRRFKLVD 251 Query: 77 TPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ + KL + S I+ A++V LVVD+ L + + + L Sbjct: 252 TAGMRRRARVDEKVEKLAVADSLRVIRMANVVVLVVDAGAILDKQDLTIARLVISEGRAL 311 Query: 134 ILILNKIDCVKPERLLEQAEIANK----LVFIEKTFMV--SATKGHGCDDVLNYLCST 185 ++ +NK D V +R + ++ +K L +I+ +V SA KGH + +L+ + T Sbjct: 312 VIAVNKWDTVD-DRAMALRQVEDKLQAALGYIKGVTVVTISALKGHKLETLLDGVLET 368 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 13/167 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S V LVG N GKSTL NR G K+++V TR +DT G+ Sbjct: 2 SFTVVLVGRPNVGKSTLFNRLAGKKLALVDDTPGVTRDWRSAPAHVGGLSFTVVDTAGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILIL 137 + DS M R + + AD+ ++D+ L + +LL+ + + ++L+ Sbjct: 62 DVTDDSLEARMRRQTEQALARADVALFIIDARAGVTPLDRHFANLLR---RGKTPVLLVA 118 Query: 138 NKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 NK + + + E E+ + +SA G G D++ L Sbjct: 119 NKTEGRAGQPGMFEAYELG-----LGDPIPLSAEHGEGMADLVEALL 160 >gi|251793092|ref|YP_003007818.1| GTPase ObgE [Aggregatibacter aphrophilus NJ8700] gi|247534485|gb|ACS97731.1| hypothetical protein NT05HA_1379 [Aggregatibacter aphrophilus NJ8700] Length = 390 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 21/190 (11%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E +D + + V ++G NAGKST + AK + + T + + + Sbjct: 147 GEKRDLLLELMLLADVGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVKVDDN 206 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD---IVCLVVDSH----RELKVNIHDL 122 V D PG+ L IR +KH + ++ +VD H + N+ + Sbjct: 207 RSFVVADIPGLIEGASEGAGLGIRF----LKHLERCRVLIHLVDIHPIDESDPADNVAII 262 Query: 123 LKEIAKRSSRLI-----LILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHG-- 174 E+ + S L L+ NKID + E E+AE IA +L + E +++SA G Sbjct: 263 ESELFQYSESLAEKPRWLVFNKIDTMSDEEAHERAEAIAERLGWTENYYLISAATGKNVP 322 Query: 175 --CDDVLNYL 182 C D++++L Sbjct: 323 QLCRDIMDFL 332 >gi|256831179|ref|YP_003159907.1| GTP-binding protein Obg/CgtA [Desulfomicrobium baculatum DSM 4028] gi|256580355|gb|ACU91491.1| GTP-binding protein Obg/CgtA [Desulfomicrobium baculatum DSM 4028] Length = 345 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 18/170 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G NAGKSTL++R A+ I + T + ++ E E ++V D PG+ Sbjct: 164 VGLLGLPNAGKSTLISRISAARPKIAAYPFTTLAPNLGVVIDEHERKLVVADIPGLIEGA 223 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK-------EIAKRSSRL---- 133 + L + ++H + +V VN+ D L E+ K L Sbjct: 224 HTGQG----LGHTFLRHVERSRFLVHILSIEDVNVEDPLSGFHILDDELRKFDPALGEKP 279 Query: 134 -ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 I ++NKID ERL E ++L K + +SA G D VL+ + Sbjct: 280 QIRVINKIDLADEERLAEVRAAFDRLGL--KVYFMSALDETGVDVVLDAM 327 >gi|26006737|sp|Q9EWW8|DER_STRCO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 465 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 28 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 87 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ +++ + K ++L NK+D Sbjct: 88 VLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGP 147 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A L E VSA G G D+L+ + LP AP Sbjct: 148 SGE---ADASYLWSLGLGEPQ-PVSALHGRGTGDMLDRVLEALPEAP 190 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+L+N+ G +V TTR V ++ F+DT GI Sbjct: 204 IALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 263 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + A I +VD+ + V ++ + +++ N Sbjct: 264 HLQQGADYYASLRTAAAVEKAEVAVI---LVDASESISVQDQRIVTMAVEAGRAIVVAYN 320 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 321 KWDTLDEER 329 >gi|258542822|ref|YP_003188255.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-01] gi|256633900|dbj|BAH99875.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-01] gi|256636959|dbj|BAI02928.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-03] gi|256640012|dbj|BAI05974.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-07] gi|256643068|dbj|BAI09023.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-22] gi|256646123|dbj|BAI12071.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-26] gi|256649176|dbj|BAI15117.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-32] gi|256652163|dbj|BAI18097.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655220|dbj|BAI21147.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-12] Length = 448 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 31/194 (15%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N GA V T +R I +++ DT G + Sbjct: 220 VVALVGYTNAGKSTLFNALTGATVYAQDQLFATLDPTMRAIDLPSGRRVILSDTVGFISD 279 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE---LKVNIHDLLKEIAKRS-------SR 132 + R + + ADI+ V D +H + K ++ +L+ +AK R Sbjct: 280 LPTELIAAFRATLEEVAEADIILHVRDVAHPDSASQKKDVLGVLEGMAKDDMLEQDWPER 339 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST------- 185 +I +LNK+D + + Q E T +SA G G + +L + + Sbjct: 340 IIEVLNKVDLLGGPEAIPQT---------EDTIAISAITGEGLETLLARIDARITQGMET 390 Query: 186 ----LPLAPWVYSA 195 LPLA SA Sbjct: 391 VRYCLPLADGAASA 404 >gi|256810052|ref|YP_003127421.1| small GTP-binding protein [Methanocaldococcus fervens AG86] gi|256793252|gb|ACV23921.1| small GTP-binding protein [Methanocaldococcus fervens AG86] Length = 341 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G N GKSTL+ + GA V I ++ TT+ I G + + I +DTPG+ + Sbjct: 174 TVVIAGYPNVGKSTLLKKLTGADVEINSYPF-TTKGINVGYLDD----IQMVDTPGLLD- 227 Query: 84 KDSYHKLMIRLS--WSTIKHADIVCLVVDSHR------ELKVNIHDLLKEIAKRSSRLIL 135 + Y + I L + A+++ ++D+ E ++N+ +KE+ K +++ Sbjct: 228 RPLYERNDIELQAILALNYLANLILFIIDASEFCGYTIEEQINLLKEIKELFKVP--IVV 285 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +NKID V R+ E E K V IE +SA K G D++ + L Sbjct: 286 AINKIDLVDENRVKEVEE-KLKDVGIENILKISADKEIGLDELKRFFIQYL 335 >gi|122702521|emb|CAL88450.1| GTPase [Helicobacter pylori] gi|122702585|emb|CAL88482.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|110635800|ref|YP_676008.1| tRNA modification GTPase TrmE [Mesorhizobium sp. BNC1] gi|123353087|sp|Q11CN2|MNME_MESSB RecName: Full=tRNA modification GTPase mnmE gi|110286784|gb|ABG64843.1| tRNA modification GTPase trmE [Chelativorans sp. BNC1] Length = 442 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 45/86 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + ++GA NAGKS+L+N V+IVT + TTR I+ + +++V DT GI A Sbjct: 224 IVILGAPNAGKSSLLNALARRDVAIVTEEPGTTRDILEVSLDIDGTKVVLADTAGIREAA 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 L I S AD+V L+ D Sbjct: 284 GRVEALGIERSLRRANEADLVLLLED 309 >gi|4467669|emb|CAB37786.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ + + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAVLNALNL 168 >gi|307296515|ref|ZP_07576338.1| GTP-binding protein Obg/CgtA [Sphingobium chlorophenolicum L-1] gi|306878029|gb|EFN09253.1| GTP-binding protein Obg/CgtA [Sphingobium chlorophenolicum L-1] Length = 363 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 11/170 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG NAGKST +N+ K + + TT+ + G+V ++ + V D PG+ Sbjct: 177 VGLVGMPNAGKSTFINQVTNTKAKVGAYAFTTTKPQL-GVVLHRDREFVLADIPGLIEGA 235 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK-EIAKRSSRL-----ILILN 138 + R I+ ++ ++D+ + V +++ E+ L I+ LN Sbjct: 236 AEGAGIGDRF-LGHIERCRVLLHLIDATGDDPVEQFRIVQDELTAYGGGLDEKPQIVALN 294 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K D + E + + AE +E F++S G G +L+ + LPL Sbjct: 295 KGDLLGQELMEDIAEQLRDEAEVEDVFIISGATGEGVPALLD---AVLPL 341 >gi|304392709|ref|ZP_07374649.1| tRNA modification GTPase TrmE [Ahrensia sp. R2A130] gi|303295339|gb|EFL89699.1| tRNA modification GTPase TrmE [Ahrensia sp. R2A130] Length = 429 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N + ++D R VAL+G NAGKS+L+N ++IV + TTR ++ ++ Sbjct: 205 NRSGEIIRDGFR---VALIGPPNAGKSSLLNALAKRDIAIVDDEAGTTRDVLETVIDLGG 261 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV 105 + DT G+ N ++ + IR + T AD+V Sbjct: 262 HMVRLFDTAGMRNTENRVEQEGIRRAEKTADAADLV 297 >gi|291541857|emb|CBL14967.1| tRNA modification GTPase TrmE [Ruminococcus bromii L2-63] Length = 455 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G N GKSTL+N G + SIVT TTR IV V+ + + DT G+ + +D+ Sbjct: 225 IAGRPNVGKSTLMNLLSGYEKSIVTDIPGTTRDIVEDTVTVGDVVLNLSDTAGLRDTEDT 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL---ILILNKIDCV 143 K+ + + ++ ++ V D+ REL + + L++ S++L I ++NK D Sbjct: 285 VEKIGVDRARKRLEQCGLLLAVFDNSRELDEDDYALIE-----SAKLVPSIAVINKTDL- 338 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 + L+ I+ + +I +SA G G D++ Sbjct: 339 --DNKLDIEYISKNIKYI---VYISAISGDGRDEL 368 >gi|260887150|ref|ZP_05898413.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] gi|330839080|ref|YP_004413660.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] gi|260863212|gb|EEX77712.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] gi|329746844|gb|AEC00201.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] Length = 442 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N+ +VSIV TR + + +DT GI + Sbjct: 5 IVAIVGRPNVGKSTLFNKLGRKRVSIVDDLPGVTRDRIYLDAEWLGKEFTMIDTGGIELD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + M + + ++ AD++ +VD L + ++ K + ++L +NKID Sbjct: 65 TSDVILRSMRQQAQIAMEEADVILFLVDGRAGLTLADEEVGKMLRTTKKPVLLAVNKIDS 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E + E N + + +SAT D+L+ L + P Sbjct: 125 PKQES--DVYEFYN--LGLGDPVPISATNAMNLGDLLDALVALFP 165 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 15/128 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--- 80 +A++G N GKS+LVN +G + IV+ TTR + ++++ + +DT G+ Sbjct: 178 SIAVIGRPNVGKSSLVNALLGEERVIVSDVAGTTRDAIDTHFMAEDTKFILIDTAGMRRK 237 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLI 134 +A + +M L + AD+V +V+D+ I + K+IA + ++ Sbjct: 238 GKIDAPIERYSVMRAL--RAVDRADVVLVVLDA----TAGITEQDKKIAGYAHESGKAVV 291 Query: 135 LILNKIDC 142 LI+NK D Sbjct: 292 LIVNKWDI 299 >gi|167893952|ref|ZP_02481354.1| GTP-binding protein EngA [Burkholderia pseudomallei 7894] Length = 454 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 5 EITFFNEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E+ + E ++ + + G +A+VG N GKSTLVN +G I TTR + Sbjct: 149 EVAYAGEPQESEEAAAARGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 208 Query: 64 IVSEKESQIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 +DT G+ ++ K + + +I A++V L++D+ +++ Sbjct: 209 DFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 268 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG--- 174 + + ++ L++ +NK D + P R +A++A KL F+E K +SA + G Sbjct: 269 HIAGFVVEQGRALVVGVNKWDGLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGA 328 Query: 175 ----CDDVLNYLCSTLP 187 DD LP Sbjct: 329 LMRSVDDAYAAAMKKLP 345 Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 9/150 (6%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-AKDSYHKLMI 92 GKSTL NR ++ ++V TR G + +DT G AKD M Sbjct: 2 GKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVAKDGILHEMA 61 Query: 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQA 152 R + ++ AD+V +VD L + + K + L++NK + +K Sbjct: 62 RQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGMK------YT 115 Query: 153 EIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +A+ + + +SA G G +D++N Sbjct: 116 AVASDFYELGLGDPRAISAAHGDGVNDMIN 145 >gi|311898744|dbj|BAJ31152.1| putative GTP-binding protein [Kitasatospora setae KM-6054] Length = 499 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T VR + DT G Sbjct: 279 SVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRAETPSGRLYTLADTVGFVRH 338 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVN---IHDLLKEIAKRSSRLILILNK 139 + R + + AD++ VVD SH E + + +++ + ++ I+++NK Sbjct: 339 LPHHLVEAFRSTMEEVGDADLILHVVDGSHPEPETQLAAVREVIVSVDAQNVPEIVVINK 398 Query: 140 IDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D P +RLL + A +VSA G G +++L + LP Sbjct: 399 ADAADPLVLQRLLRREPHA---------IVVSARSGQGIEELLALIDRELP 440 >gi|294628589|ref|ZP_06707149.1| ribosome-associated GTPase EngA [Streptomyces sp. e14] gi|292831922|gb|EFF90271.1| ribosome-associated GTPase EngA [Streptomyces sp. e14] Length = 494 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 56 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 115 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ +++ + K ++L NK+D Sbjct: 116 VLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGQ 175 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E + A + + + + + VSA G G D+L+ + LP AP Sbjct: 176 SGE--ADAAYLWS--LGLGEPHPVSALHGRGTGDMLDRVLEVLPEAP 218 Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VAL+G N GKS+L+N+ G + +V TTR V ++ F+DT GI Sbjct: 233 VALIGRPNVGKSSLLNKVAGEERVVVDELAGTTRDPVDELIELGGKTWKFVDTAGIRKRV 292 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++D+ + V ++ + L++ N Sbjct: 293 HLQQGADYYASLR---TAAAVEKAEVAVVLIDASESVSVQDQRIITMAVEAGRALVVAYN 349 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 350 KWDTLDEER 358 >gi|167975307|ref|ZP_02557584.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195659820|gb|EDX53200.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 12 str. ATCC 33696] Length = 437 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKSTL+N + +IVT TTR ++ ++ + LDT GI + Sbjct: 216 VLIIGKPNVGKSTLLNAICNEQKAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHSTN 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 D L I + I D+V +V ++ + + ++DL+K+ Sbjct: 276 DFVENLGINKAKELINKVDLVLYLVPANNQQDLELYDLIKD 316 >gi|117618820|ref|YP_855468.1| GTP-binding protein HflX [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560227|gb|ABK37175.1| GTP-binding protein HflX [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 428 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N+ A V T +R +V + ++ DT G Sbjct: 199 TVSLVGYTNAGKSTLFNQLTAASVYAADQLFATLDPTLRKLVIQDVGDVILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSSRLILIL 137 + H L+ + + + AD++ VVD + +++ NI +L EI ++I Sbjct: 257 RHLPHDLVAAFKATLQETREADLLLHVVDCADEQMQENIESVQQVLAEIEADDRPQLMIC 316 Query: 138 NKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + + LE+ E + +SA G GC D+ L L Sbjct: 317 NKIDKLGEHPVGLERDEEGRPV-----RVWLSAQTGEGCADLFTALTELL 361 >gi|157165129|ref|YP_001466229.1| GTP-binding protein EngA [Campylobacter concisus 13826] gi|166224319|sp|A7ZBS1|DER_CAMC1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|112801522|gb|EAT98866.1| GTP-binding protein EngA [Campylobacter concisus 13826] Length = 462 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 7/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKS+L NR +++I + TTR + + + + + +D+ G+ ++ Sbjct: 4 VILVGKPNVGKSSLFNRLARRRIAITSDVSGTTRDTNKAKIEVEGKECILIDSGGLDDSS 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + + + K++D++ +VD + E++K + + L++NKID K Sbjct: 64 ELFKNVKAK-TLAEAKNSDVILYMVDGKMMPDDEDRAIFYELSKLNLPIALVINKIDSKK 122 Query: 145 PE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E R E +K +F +S + G D++ +L L Sbjct: 123 DEQREWEFVNFGSK-----NSFGISVSHNTGVDELSIWLAKHL 160 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 10/170 (5%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E D + S++ V ++G N GKS+L+N V ++V+ TT V I Sbjct: 186 ELSDEIDYESKNIRVGIIGRVNVGKSSLLNALVKESRAVVSDVAGTTIDPVNEIYEHDGR 245 Query: 71 QIVFLDTPGIFNAK--DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 F+DT GI + + + + ++ D+ LV+DS L +L + IA Sbjct: 246 VFEFVDTAGIRKRGKIEGIERYALNRTEKILEETDVALLVLDSSEPLT----ELDERIAG 301 Query: 129 RSSR----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 +S+ +I++LNK D E EI ++ F+ ++S + G Sbjct: 302 IASKFELGVIIVLNKWDKSSEEFDELCKEIKDRFKFLSYAPIISVSALGG 351 >gi|70727675|ref|YP_254591.1| tRNA modification GTPase TrmE [Staphylococcus haemolyticus JCSC1435] gi|82582308|sp|Q4L2Z2|MNME_STAHJ RecName: Full=tRNA modification GTPase mnmE gi|68448401|dbj|BAE05985.1| possible thiophene and furan oxidation protein [Staphylococcus haemolyticus JCSC1435] Length = 459 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D K+ + S + AD++ V++++ L L + I + I+I+NK Sbjct: 279 IRDTEDIVEKIGVERSRKALSEADLILFVLNNNEPLTQEDRTLYEVIKNEDA--IVIVNK 336 Query: 140 IDC 142 D Sbjct: 337 TDL 339 >gi|254884683|ref|ZP_05257393.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319642352|ref|ZP_07997007.1| hypothetical protein HMPREF9011_02607 [Bacteroides sp. 3_1_40A] gi|254837476|gb|EET17785.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317386012|gb|EFV66936.1| hypothetical protein HMPREF9011_02607 [Bacteroides sp. 3_1_40A] Length = 396 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 23/172 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L G N+GKS+L+N G ++V+ TT ++ + + + +F+DTPG F+ Sbjct: 14 IVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFIDTPG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD---LLKEIAKRSSRLILILNKI 140 + ++ I + I+ DI L+ + N D ++++ KR+ +ILILNK Sbjct: 73 EGELGEMRITRTLKAIERTDIALLLCEDG-----NCEDEKQWMEQLNKRNIPVILILNKA 127 Query: 141 DCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCSTLP 187 D K +IA+ IEK ++SA + G + +L + LP Sbjct: 128 DIRK--------DIASTRDRIEKECGQNPLIISAKEQTGIEKILQAILEKLP 171 >gi|269836202|ref|YP_003318430.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM 20745] gi|269785465|gb|ACZ37608.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM 20745] Length = 466 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 7/128 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + A+ +IVT TTR ++ ++ + +DT GI + + Sbjct: 225 IAIVGRPNVGKSSLLNTLLRAERAIVTDIAGTTRDVIAESINLQGIPATLIDTAGIADTE 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-----RLILILNK 139 D ++ I S + A + V+D + + + + +R + RL+L+LNK Sbjct: 285 DIIERMGIDRSRRALDTAGLAIFVLDGSMPPTPDDFRVAELLQRRVASDGHDRLVLVLNK 344 Query: 140 IDCVKPER 147 D P+R Sbjct: 345 RDL--PDR 350 >gi|291296117|ref|YP_003507515.1| tRNA modification GTPase TrmE [Meiothermus ruber DSM 1279] gi|290471076|gb|ADD28495.1| tRNA modification GTPase TrmE [Meiothermus ruber DSM 1279] Length = 437 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 46/86 (53%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVGA NAGKS+L+N +G + +IVT TTR + + IV +DT G+ Sbjct: 223 IALVGAPNAGKSSLLNALLGYERAIVTPIPGTTRDYLEAPLEIAGVPIVAVDTAGVRETD 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 D K + + + + AD+V + D Sbjct: 283 DVIEKSGVERALAIAQEADLVLYLAD 308 >gi|15614925|ref|NP_243228.1| hypothetical protein BH2362 [Bacillus halodurans C-125] gi|10174982|dbj|BAB06081.1| BH2362 [Bacillus halodurans C-125] Length = 418 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL+NR + T + R + +++ DT G N Sbjct: 204 IALVGYTNAGKSTLLNRLTASDSYEEDLLFATLDPMTRKMRLPSGMEVILSDTVGFINQL 263 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 + R + +KHAD++ VVD S +L+ + + +LL ++ S+++++ NK Sbjct: 264 PTTLVAAFRSTLEEVKHADLLLHVVDRSSEQLQAHMETVSELLHQLEVDQSQMLVVYNKA 323 Query: 141 DCVKP 145 D KP Sbjct: 324 D--KP 326 >gi|326387750|ref|ZP_08209356.1| small GTP-binding protein domain-containing protein [Novosphingobium nitrogenifigens DSM 19370] gi|326207796|gb|EGD58607.1| small GTP-binding protein domain-containing protein [Novosphingobium nitrogenifigens DSM 19370] Length = 448 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 9/171 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL NR GA V T +R I + + DT G + Sbjct: 218 IALVGYTNAGKSTLFNRLTGATVMAEDLLFATLDPTMRAIRLPGVDKAILSDTVGFISDL 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIA-----KRSSRLIL 135 + R + + AD++ V D + + K + D+L ++ S ++ Sbjct: 278 PTQLVAAFRATLEEVTAADVIVHVRDVANPASAQQKREVEDILTDLGVIGEEGTSIPIVE 337 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + P+ + ++ V +SA G G D ++ L + L Sbjct: 338 AWNKIDLLAPDERALREDLITHGVPDRPVVPISAATGEGVDALVERLGTML 388 >gi|323342292|ref|ZP_08082524.1| tRNA modification GTPase TrmE [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463404|gb|EFY08598.1| tRNA modification GTPase TrmE [Erysipelothrix rhusiopathiae ATCC 19414] Length = 446 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 15/157 (9%) Query: 3 MGEITFFNEHKDFVQD------NSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSI 49 + E E K F++D S+SG + ++G N GKS+++N + +I Sbjct: 189 LTEAVILPEAKRFLEDLGKILKESQSGRIMKEGVKTVILGKPNVGKSSILNVLLEEDKAI 248 Query: 50 VTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 VT TTR +V G + + + +DT G+ + D ++ I S ++ A++V +V Sbjct: 249 VTEIAGTTRDLVEGWIRLENVALHLIDTAGLRDTGDRIEQIGIEKSRKALESAELVIVVF 308 Query: 110 DSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 D+ + DLL+ A + I++ NK D V E Sbjct: 309 DASQARDQEDIDLLE--ATKHKERIIVYNKKDLVNRE 343 >gi|15834701|ref|NP_296460.1| GTP-binding protein EngA [Chlamydia muridarum Nigg] gi|270284867|ref|ZP_06194261.1| GTP-binding protein EngA [Chlamydia muridarum Nigg] gi|301336246|ref|ZP_07224448.1| GTP-binding protein EngA [Chlamydia muridarum MopnTet14] gi|14194736|sp|Q9PLM3|DER_CHLMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|7190111|gb|AAF38958.1| GTP-binding protein, Era/ThdF family [Chlamydia muridarum Nigg] Length = 490 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VAL+G N GKS++VN + + I + TTR V + + + VF+DT G+ A Sbjct: 229 VALIGHPNVGKSSIVNALLKEERCITDNSPGTTRDNVDVSYTYNDKEYVFIDTAGLRKAK 288 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+S + + I ADI LV+D+ ++L +L IA+ ++++NK D Sbjct: 289 SIKNSVEWMSSSRTEKAISRADICLLVIDATQQLSYQDKRILSLIARYKKPHVILVNKWD 348 Query: 142 CV 143 + Sbjct: 349 LM 350 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 5/106 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 +A++G N GKS++ NR ++IV + TTR + G + +S + +DT G+ + Sbjct: 3 IAILGRPNVGKSSIFNRLCKRSLAIVNAQEGTTRDRLYGEIRAWDSIVHVIDTGGVDQES 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 D + K + + + + + A ++ LVVD ++ I +E+AKR Sbjct: 63 TDRFQKQIHKQALAAAEEASVLLLVVD----IRCGITKQDEELAKR 104 >gi|301299471|ref|ZP_07205746.1| ribosome-associated GTPase EngA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852934|gb|EFK80543.1| ribosome-associated GTPase EngA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 436 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 10/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRLAGERISIVEDTPGVTRDRIYARTEWLGHPFNLIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I+ AD++ VV S +E + + + I R+ + ++L +NK+D Sbjct: 65 DEPFLTQITEQAEIAIEEADVIIFVV-SVKEGVTDADEKVARILYRTDKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +A+I + L F E V+ T G G D+L+ + P Sbjct: 123 -NPEL---RADIYDFYSLGFGEP-IPVAGTHGIGTGDLLDKIIKEFP 164 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 4/136 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQ 71 KD + S + +G N GKS+LVN +G IV++ TTR +I +E ++ Sbjct: 165 KDATNEEDDSIKFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDTRFETEDGTK 224 Query: 72 IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +DT GI Y K + + I +D+VC+V+++ +++ + + Sbjct: 225 YTMIDTAGIRKKGKVYENTEKYSVLRAMRAIDRSDVVCVVLNAEEDIREQDKHVAGYAHE 284 Query: 129 RSSRLILILNKIDCVK 144 +++++NK D +K Sbjct: 285 AGRAIVIVVNKWDTLK 300 >gi|149183701|ref|ZP_01862112.1| GTP-binding protein EngA [Bacillus sp. SG-1] gi|148848583|gb|EDL62822.1| GTP-binding protein EngA [Bacillus sp. SG-1] Length = 436 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 6/164 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSADWLTHDFNIIDTGGIEIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + + + I AD++ + + RE +++ +I RS + ++L +NKID Sbjct: 65 DEPFLEQIRQQAEIAIDEADVIVFLTNG-REGVTAADEIVAKILYRSKKPVVLAVNKID- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 PE + E L F E F +S G G D+L+ + Sbjct: 123 -NPE-MRELVYDFYSLGFGE-PFPISGAHGIGLGDMLDEVAKNF 163 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G IV++ TTR + + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNALLGEDRVIVSNVAGTTRDAIDSKLKVDGQEYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I+ +D+V +V+D + + + +I+++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVIDGEEGIIEQDKKIAGYAHEAGRGVIIVVNKWDA 298 Query: 143 V-KPERLLEQAE 153 V K E+ +++ E Sbjct: 299 VEKDEKTMKKFE 310 >gi|122702407|emb|CAL88394.1| GTPase [Helicobacter pylori] Length = 168 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 64 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD++ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 119 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K + EQ A + K+F +S + G +++ + L L Sbjct: 120 NKIDNDKEK---EQT-YAFSSFGMPKSFNISVSHNRGISVLIDAILHALGL 166 >gi|15616624|ref|NP_244930.1| tRNA modification GTPase TrmE [Bacillus halodurans C-125] gi|14195295|sp|Q9RCA7|MNME_BACHD RecName: Full=tRNA modification GTPase mnmE gi|5672642|dbj|BAA82680.1| 77%-identity [Bacillus halodurans] gi|10176687|dbj|BAB07781.1| thiophen and furan oxidation [Bacillus halodurans C-125] Length = 458 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT GI +D Sbjct: 225 IIGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ + S +K A+++ LV++ EL L + I+ + I+I+NK D Sbjct: 285 VERIGVERSREVLKEAELILLVLNFGEELSKEDEALFEAISGMEA--IVIVNKTDV 338 >gi|307211526|gb|EFN87614.1| tRNA modification GTPase mnmE [Harpegnathos saltator] Length = 434 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 8/131 (6%) Query: 18 DNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 D R G + + GA NAGKS+++NR V+IVT + TTR + + ++ D Sbjct: 209 DVMRDGVKIVIAGAPNAGKSSVINRLAARDVAIVTEEAGTTRDALEIRLVLGGLPVLVTD 268 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 T G+ ++ K+ I + + I AD++ L+ D H + L E+ + + I Sbjct: 269 TAGLRQTENHIEKMGIESAAARIGEADLILLLDDMH-------NPQLVELPPTEAEIWSI 321 Query: 137 LNKIDCVKPER 147 NK+D + +R Sbjct: 322 GNKLDLGEGDR 332 >gi|292806664|gb|ADE42462.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ ++ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|212217715|ref|YP_002304502.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuK_Q154] gi|212011977|gb|ACJ19357.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii CbuK_Q154] Length = 473 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 11/130 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G N GKS+L+N G + +IVT TTR I+R + I +DT G Sbjct: 235 REGITVVIAGEPNVGKSSLLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAG 294 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR------L 133 + +D K +R + ++ AD++ L++D+ + + D K IA+ S Sbjct: 295 LRLTEDVVEKEGVRRTQKAVQQADLLLLMIDASKPTE----DFKKIIAQWFSENDNKIPT 350 Query: 134 ILILNKIDCV 143 ++I NKID + Sbjct: 351 LIIENKIDLI 360 >gi|90961863|ref|YP_535779.1| GTP-binding protein EngA [Lactobacillus salivarius UCC118] gi|227890889|ref|ZP_04008694.1| GTP-binding protein EngA [Lactobacillus salivarius ATCC 11741] gi|122448999|sp|Q1WTQ4|DER_LACS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|90821057|gb|ABD99696.1| GTP-binding protein [Lactobacillus salivarius UCC118] gi|227867298|gb|EEJ74719.1| GTP-binding protein EngA [Lactobacillus salivarius ATCC 11741] gi|300214593|gb|ADJ79009.1| GTP-binding protein engA [Lactobacillus salivarius CECT 5713] Length = 436 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 10/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRLAGERISIVEDTPGVTRDRIYARTEWLGHPFNLIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I+ AD++ VV S +E + + + I R+ + ++L +NK+D Sbjct: 65 DEPFLTQITEQAEIAIEEADVIIFVV-SVKEGVTDADEKVARILYRTDKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE +A+I + L F E V+ T G G D+L+ + P Sbjct: 123 -NPEL---RADIYDFYSLGFGEP-IPVAGTHGIGTGDLLDKIIKEFP 164 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 4/136 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQ 71 KD + S + +G N GKS+LVN +G IV++ TTR +I +E ++ Sbjct: 165 KDATNEEDDSIKFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDTRFETEDGTK 224 Query: 72 IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +DT GI Y K + + I +D+VC+V+++ ++ + + Sbjct: 225 YTMIDTAGIRKKGKVYENTEKYSVLRAMRAIDRSDVVCVVLNAEEGIREQDKHVAGYAHE 284 Query: 129 RSSRLILILNKIDCVK 144 +++++NK D +K Sbjct: 285 AGRAIVIVVNKWDTLK 300 >gi|329667448|gb|AEB93396.1| putative GTP-binding protein EngA [Lactobacillus johnsonii DPC 6026] Length = 435 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV K TR + + + +DT GI Sbjct: 5 VVALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + I AD++ ++ D + + N+ + + ++ R+ + +IL +NK D Sbjct: 65 SGEIEEQIKAQAEIAIDEADVIVMLGDVTQHM-TNMDETIAKMLYRTKKPVILAINKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + Sbjct: 123 -NPEQRTDIYDFYS--LGLGDPIPVSGSHGTGMGDLLDAIVG 161 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 14/178 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N+H+D D+ R +++G N GKS+LVN +G + IV++ TTR + + Sbjct: 168 NQHED---DSIR---FSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDG 221 Query: 70 SQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT GI Y K + + S I+ +DI LV+D+ ++ + Sbjct: 222 QKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAGYA 281 Query: 127 AKRSSRLILILNKIDCVKPE-RLLEQAE--IANKLVFIEKT--FMVSATKGHGCDDVL 179 +I+++NK D K + R ++ E I + +++ VSA G D+L Sbjct: 282 HDAGRGVIIVVNKWDLPKKDSRSMKDFEDTIRREFQYLDYAPIIFVSAKTGQRVPDIL 339 >gi|299115668|emb|CBN75868.1| MEngA, mitochondrial EngA GTPase [Ectocarpus siliculosus] Length = 629 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 18/180 (10%) Query: 20 SRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +R G V +VG N GKSTL NR +IVT TTR VS F DT Sbjct: 109 ARGGAFRVVIVGRPNVGKSTLYNRLATRNRAIVTPIAGTTRDRKESTVSLGGMTFDFADT 168 Query: 78 PGIFNAKDSYHK------------LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 G+ + D K ++++ + I+ +DIV +VD+ + + + Sbjct: 169 GGLEDGADEPWKGPPGTPHPGMPQVVLKKTEEAIEDSDIVLFMVDARQGVTEADRHYARW 228 Query: 126 IAKRSSR---LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + KR R + ++ NK + E++ + E +L F E +S++ G G D L Sbjct: 229 VRKRQGRHRGVYIVANKTEGQLTEQMSQTLEECGRLGFGEP-LAISSSHGDGMADFATAL 287 >gi|291519874|emb|CBK75095.1| iron-only hydrogenase maturation protein HydF [Butyrivibrio fibrisolvens 16/4] Length = 394 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 6/129 (4%) Query: 18 DNSRSGC---VALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTRSIVRGIVSEKESQIV 73 +N+ SG + G NAGKS++VN+ ++S+V+ HK TT + + + +V Sbjct: 4 NNTASGQRVHIGFFGIRNAGKSSIVNKLTNQEISLVSAHKGTTTDPVKKAMEILPIGPVV 63 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSR 132 +DT G F+ + +L ++ + DIV +V+D+ ++L D LK + +R Sbjct: 64 IIDTAG-FDDEGELGELRKNRTYRILDEIDIVVMVLDAREKQLSTEEADFLKNVKERKVP 122 Query: 133 LILILNKID 141 I+I N D Sbjct: 123 YIIIENHTD 131 >gi|284116005|ref|ZP_06386701.1| GTP-binding protein engA [Candidatus Poribacteria sp. WGA-A3] gi|283829542|gb|EFC33894.1| GTP-binding protein engA [Candidatus Poribacteria sp. WGA-A3] Length = 435 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA++G N GKSTL NR +G + +IV + TR + + + + +DT G+ Sbjct: 3 LVAVIGRPNVGKSTLFNRILGTRNAIVDDRPGVTRDRIYAECTYQGRRFQVVDTGGLDPT 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D L+ R S + + ADI+ +++D L +++ + ++NK+D Sbjct: 63 STDDMLGLIRRQSQAALAAADILLVIMDGRDGLTPMDREIVDGLHGVDKPTFWVVNKVDT 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E LL K + F +SA GHG D++L LP Sbjct: 123 PALEPLLADFYHLGK----DTLFPISAEHGHGVDELLEAFLHLLP 163 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+VG N GKSTLVN +G + ++V+ TTR + + + + DT G+ Sbjct: 177 VAMVGRPNVGKSTLVNTILGEERAVVSDVPGTTRDPIDTHLEREGRTFLLTDTAGLRRRG 236 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + + +DI L++D + + I ++ ++++NK D Sbjct: 237 RVEPGIEGYSVARTMRALGRSDIGVLLLDGVEGVTDQDTKIAGLIQRQGRGCVMLVNKWD 296 Query: 142 CVKPER 147 + +R Sbjct: 297 LRRNQR 302 >gi|111221687|ref|YP_712481.1| GTP-binding protein EngA [Frankia alni ACN14a] gi|111149219|emb|CAJ60904.1| GTP-binding protein [Frankia alni ACN14a] Length = 502 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 12/171 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR + + +DT G Sbjct: 63 VVAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRIAYDAVWNGRRFTLVDTGGWEPD 122 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSS-RLILILNK 139 + + + + AD V +VD + D + +A+ RS +IL+ NK Sbjct: 123 ASGLAAQVSEQASAALDTADAVLFIVD----VTTGATDADEAVARVLHRSGLPVILVANK 178 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +D + E A + + + VSA G G D+L+ + + LP AP Sbjct: 179 VD----DNRFESDAAALWGLGLGEPHPVSALHGRGSGDLLDAVLAVLPEAP 225 Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 12/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VAL+G N GKS+L+N+ G++ S+V TTR V +V+ + +F+DT G+ Sbjct: 238 VALIGRPNVGKSSLLNKIAGSRRSLVHDVAGTTRDPVDELVTVGGEEWMFIDTAGLRRRI 297 Query: 83 ---AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + Y+ + + IV L D L ++ + + L++ NK Sbjct: 298 REASGAEYYSSLRTAAALEAAEVAIVLLAADE--PLTEQDQRVITMVIEAGRALVIAFNK 355 Query: 140 IDCVKPER--LLEQAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTL 186 D V +R LE+ EI L I +SA G D + L + L Sbjct: 356 WDLVDEDRRYTLER-EIDRDLGRIAWAPRVNISARTGRATDRLAPALRTAL 405 >gi|330752119|emb|CBL87080.1| GTP-binding protein [uncultured Flavobacteria bacterium] Length = 434 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINSLIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLIDTAGIRRKAK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I+H D+ LVVD+ R + ++ + + +++++NK D Sbjct: 238 VKEDIEFYSVMRSVRAIEHCDVCILVVDATRGFDGQVQNIFWLAHRNNKGIVILVNKWDL 297 Query: 143 VK 144 V+ Sbjct: 298 VE 299 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR + + +IV TR G +DT G + Sbjct: 2 SAIVAIVGRPNVGKSTFFNRMIQKREAIVDAVSGVTRDRHYGKTDWNGRDFSLIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSR--LILI 136 + D + K + + I+ AD + +V E++ + + +E+A R SR + L Sbjct: 62 VGSDDVFEKEIDKQVELAIEEADAIIFMV----EVETGVTGMDEEVAHLLRRSRKPVFLA 117 Query: 137 LNKID 141 +NK+D Sbjct: 118 VNKVD 122 >gi|315499685|ref|YP_004088488.1| ribosome-associated gtpase enga [Asticcacaulis excentricus CB 48] gi|315417697|gb|ADU14337.1| ribosome-associated GTPase EngA [Asticcacaulis excentricus CB 48] Length = 550 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 12/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKSTL+NR +G + + TR + + +I +DT G+ Sbjct: 209 IAIIGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVDWEYEGRKIRLVDTAGLRRKA 268 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 ++ KL + I A++V LV+D +E DL + ++ +R R LI +++K Sbjct: 269 RVQEKLEKLSTADTIRAITFAEVVILVMD--QENAFETQDLQIADLVEREGRALIYVISK 326 Query: 140 IDCV-KPE-RLLEQAEIANKLV--FIEKTFM-VSATKGHGCDDVL 179 D V +P+ RL E +EIA +++ F+ +SA G G D ++ Sbjct: 327 WDTVEEPQARLHELSEIAERMLPQLRGAPFVALSALNGRGLDRLM 371 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 7/160 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR G K++IV + TR + + +DT G + Sbjct: 27 IAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGHIGDIDLDLIDTAGFEDVA 86 Query: 85 D-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-RSSRLILILNKIDC 142 D S M + + I+ D+ V+D+ RE V + + +I + + +ILI NK + Sbjct: 87 DTSLEARMRQQTEKAIEECDVALFVMDA-REGVVPLDRIFADILRFKDKPVILIANKAEG 145 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 AE A+ L F +SA G G ++ L Sbjct: 146 ---HAGFAGAEEAHVLGF-GAPLHLSAEHGEGISELYEAL 181 >gi|153937917|ref|YP_001392999.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. Langeland] gi|166200475|sp|A7GJN9|MNME_CLOBL RecName: Full=tRNA modification GTPase mnmE gi|152933813|gb|ABS39311.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. Langeland] Length = 461 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 9/128 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N + +IVT TTR ++ ++ +DT G Sbjct: 221 REGLNTVIVGKPNVGKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPTKIVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILI 136 I +D K+ + S I AD+V ++D + E + I D +K + + I++ Sbjct: 281 IRETEDVVEKIGVEKSKEKIDEADLVIFMLDLSKKIDEEDIEIMDFIK-----NKKYIVL 335 Query: 137 LNKIDCVK 144 LNK+D K Sbjct: 336 LNKLDLNK 343 >gi|114798294|ref|YP_759502.1| GTP-binding protein EngA [Hyphomonas neptunium ATCC 15444] gi|122942672|sp|Q0C441|DER_HYPNA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114738468|gb|ABI76593.1| GTP-binding protein EngA [Hyphomonas neptunium ATCC 15444] Length = 510 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKSTL+N+ + + + + TR + + QI +DT G+ K Sbjct: 232 LAIVGRPNAGKSTLINQLLQSDRMLTGPEAGITRDSITVNWEWEGRQIRLVDTAGL-RRK 290 Query: 85 DSYHKLMIRLSWS----TIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILN 138 + + + R+S + ++K+ADIV LV+D+H ++ DL + ++A R R ++L+++ Sbjct: 291 NKVQERLERMSTAETIRSLKYADIVALVMDAHEAMEK--QDLQIADLALREGRGVVLVIS 348 Query: 139 KIDCVK 144 K D V+ Sbjct: 349 KWDTVE 354 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR VG K+++V + TR + +DT G N Sbjct: 5 LAIVGRPNVGKSTLFNRLVGKKIALVDDQPGVTRDRKMADGRLASLPLSLIDTAGFDNVN 64 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSH 112 DS M + + I AD+V +VD+ Sbjct: 65 DDSLEARMRAQTEAAIAEADLVLFLVDAR 93 >gi|90411344|ref|ZP_01219356.1| hypothetical protein P3TCK_10993 [Photobacterium profundum 3TCK] gi|90327873|gb|EAS44204.1| hypothetical protein P3TCK_10993 [Photobacterium profundum 3TCK] Length = 445 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 10/131 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CVALVG TNAGKS+++ G++V + T + VR + + +I+ DT G Sbjct: 226 CVALVGYTNAGKSSMMRAITGSEVLVEDKLFATLDTTVRALYPITQPRILVSDTVGFI-- 283 Query: 84 KDSYHKLMIRL--SWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 K H L+ + + A ++ VVD+ +L V +H++L+E+ ++ +L+ Sbjct: 284 KKLPHDLVASFHSTLAEAHDASLLLYVVDASDSSFRTQLDV-VHEVLEEVGVEGAKKLLV 342 Query: 137 LNKIDCVKPER 147 LNK D + E+ Sbjct: 343 LNKSDQLSTEQ 353 >gi|42519017|ref|NP_964947.1| GTP-binding protein EngA [Lactobacillus johnsonii NCC 533] gi|227889871|ref|ZP_04007676.1| GTP-binding protein EngA [Lactobacillus johnsonii ATCC 33200] gi|268319593|ref|YP_003293249.1| GTP-binding protein engA [Lactobacillus johnsonii FI9785] gi|81832245|sp|Q74JL6|DER_LACJO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41583304|gb|AAS08913.1| probable GTP-binding protein EngA [Lactobacillus johnsonii NCC 533] gi|227849735|gb|EEJ59821.1| GTP-binding protein EngA [Lactobacillus johnsonii ATCC 33200] gi|262397968|emb|CAX66982.1| GTP-binding protein engA [Lactobacillus johnsonii FI9785] Length = 435 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV K TR + + + +DT GI Sbjct: 5 VVALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + I AD++ ++ D + + N+ + + ++ R+ + +IL +NK D Sbjct: 65 SGEIEEQIKAQAEIAIDEADVIVMLGDVTQHM-TNMDETIAKMLYRTKKPVILAINKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + Sbjct: 123 -NPEQRTDIYDFYS--LGLGDPIPVSGSHGTGMGDLLDAIVG 161 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 18/180 (10%) Query: 10 NEHKDFVQDNSRSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 N+H+D G + +++G N GKS+LVN +G + IV++ TTR + + Sbjct: 168 NQHED--------GSIRFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTN 219 Query: 68 KESQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 + +DT GI Y K + + S I+ +DI LV+D+ ++ + Sbjct: 220 DGQKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAG 279 Query: 125 EIAKRSSRLILILNKIDCVKPE-RLLEQAE--IANKLVFIEKT--FMVSATKGHGCDDVL 179 +I+++NK D K + R ++ E I + +++ VSA G D+L Sbjct: 280 YAHDAGRGVIIVVNKWDLPKKDSRSMKDFEDTIRREFQYLDYAPIIFVSAKTGQRVPDIL 339 >gi|317124960|ref|YP_004099072.1| ribosome-associated GTPase EngA [Intrasporangium calvum DSM 43043] gi|315589048|gb|ADU48345.1| ribosome-associated GTPase EngA [Intrasporangium calvum DSM 43043] Length = 494 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 16/185 (8%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H + Q R VALVG N GKS+L+N+ G++ +V TTR V ++ + Sbjct: 225 HGAYAQGGPRR--VALVGRPNVGKSSLLNKLAGSERVVVDSVAGTTRDPVDELIELAGTT 282 Query: 72 IVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 F+DT GI D Y L + + ++ A++ +++D+ + ++++ Sbjct: 283 WRFVDTAGIRRRVHQTRGADFYASLRTQ---TALEKAEVAVVLIDAEEPIAEQDVRVVQQ 339 Query: 126 IAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNY 181 + L++ NK D + ER LE+ EI +LV + V SA G D ++ Sbjct: 340 VIDAGRALVVAYNKWDTLDEERRYYLER-EIEKELVQVPWAARVNISAKTGRHLDRLVPA 398 Query: 182 LCSTL 186 L L Sbjct: 399 LEKAL 403 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKS+LVNR + + ++V TR V + +DT G + Sbjct: 61 VVAVIGRPNVGKSSLVNRILRRREAVVEDVPGVTRDRVSYEGEWAGRRFTVVDTGGWESD 120 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 H + + I AD+V VVD+ + +++ + + ++LI NK+D Sbjct: 121 VTGIHLRVAEQAEIAIDLADVVMFVVDATVGATDDDESVVRLLRRSGKPVVLIANKVDDQ 180 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + A + N + + + + VSA G G D L+ + LP Sbjct: 181 RGE--ADAAALWN--LGLGQPWPVSALHGRGSGDALDAVLEVLP 220 >gi|240851403|ref|YP_002972806.1| tRNA modification GTPase TrmE [Bartonella grahamii as4aup] gi|240268526|gb|ACS52114.1| tRNA modification GTPase TrmE [Bartonella grahamii as4aup] Length = 435 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 53/102 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + GA N+GKS+++NR G V+IVT + TTR + + I DT G + Sbjct: 217 IVIAGAPNSGKSSIMNRLSGRSVAIVTEEAGTTRDALEMRIILGGLPIFLTDTAGFRKTE 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + ++ I ++ ++ AD+V LV D +V++ + EI Sbjct: 277 NKIEQMGIEVAKQHVREADLVILVYDIGNPEQVDLPETSAEI 318 >gi|187777372|ref|ZP_02993845.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC 15579] gi|187774300|gb|EDU38102.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC 15579] Length = 461 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N + +IVT TTR ++ ++ I +DT G Sbjct: 221 REGLNTVIVGKPNVGKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S I AD+V ++D R++ +++ I ++ + I++LNK Sbjct: 281 IRETEDVVEKIGVEKSKEKIAEADLVIFMLDLSRKIDEEDIEIMNFI--KNKKYIVLLNK 338 Query: 140 IDCVK 144 D K Sbjct: 339 SDLNK 343 >gi|325265768|ref|ZP_08132455.1| ribosome-associated GTPase EngA [Kingella denitrificans ATCC 33394] gi|324982751|gb|EGC18376.1| ribosome-associated GTPase EngA [Kingella denitrificans ATCC 33394] Length = 489 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 8/180 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFL 75 Q ++ A++G N GKSTLVN +G + I TTR + I E+E + + Sbjct: 170 QPENKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTII 228 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ ++ K + + ++ A++ LV+D+ +++ + + Sbjct: 229 DTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRA 288 Query: 133 LILILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 L++ +NK D + ER + + +IA KL F++ K +SA K G D + + + + A Sbjct: 289 LVIAVNKWDGISEERRNDIKRDIARKLYFLDFAKFHYISALKERGIDGLFDSIQAAYDAA 348 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M R + I AD V +VD+ L Sbjct: 64 VDSGILHE-MARQTLQAIDEADAVIFLVDARTGL 96 >gi|261337755|ref|ZP_05965639.1| ribosome-associated GTPase EngA [Bifidobacterium gallicum DSM 20093] gi|270277209|gb|EFA23063.1| ribosome-associated GTPase EngA [Bifidobacterium gallicum DSM 20093] Length = 709 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 4/164 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + ++ AD V LVVD L + +++ + + + +NK D Sbjct: 333 DVEGIESAIASQAQIAVELADAVILVVDGQVGLTASDERIVRMLRASGKPVTVAVNKAD- 391 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ E A + + + F +SA G G D+L+ L Sbjct: 392 ---DQTAEYAASEFWKLGLGEPFPISAMHGRGVGDLLDAALDKL 432 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ ++ ++V TTR V IV +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLSHSERAVVNDLAGTTRDPVDEIVDIDGQDYLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ D+ + + ++ ++L+ N Sbjct: 507 RRQHKLSGAEYYSSLRTQAAIERSELALVLFDASQPISDQDLKVMSTAVDAGRAVVLVFN 566 Query: 139 KIDCV 143 K D + Sbjct: 567 KWDLM 571 >gi|215430606|ref|ZP_03428525.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054] gi|219557637|ref|ZP_03536713.1| GTP-binding protein EngA [Mycobacterium tuberculosis T17] gi|289569764|ref|ZP_06449991.1| GTP-binding protein engA [Mycobacterium tuberculosis T17] gi|289753804|ref|ZP_06513182.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054] gi|289543518|gb|EFD47166.1| GTP-binding protein engA [Mycobacterium tuberculosis T17] gi|289694391|gb|EFD61820.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054] Length = 463 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 4/172 (2%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + ++ + VA+VG N GKSTLVNR +G + ++V TR V + V Sbjct: 20 IAESGAAPVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQ 79 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DT G +L+ + ++ AD V LVVD+ + + + + L Sbjct: 80 DTGGWEPNAKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFL 139 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D K E + A + + + + + +SA G G D+L+ + + LP Sbjct: 140 AANKVDSEKGES--DAAALWS--LGLGEPHAISAMHGRGVADLLDGVLAALP 187 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 11/193 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ F+DT G+ Sbjct: 202 VALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKV 261 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + + I A++ +++D+ + L ++ + + L+L NK D Sbjct: 262 GQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWD 321 Query: 142 CVKPERL-LEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 V +R L Q EI +LV + + +SA G ++ + LA W +I Sbjct: 322 LVDEDRRELLQREIDRELVQVRWAQRVNISAKTGRAVHKLVPAMEDA--LASW---DTRI 376 Query: 199 SDLPMFHFTAEIT 211 + P+ + E+T Sbjct: 377 ATGPLNTWLTEVT 389 >gi|217976948|ref|YP_002361095.1| GTP-binding protein EngA [Methylocella silvestris BL2] gi|217502324|gb|ACK49733.1| small GTP-binding protein [Methylocella silvestris BL2] Length = 467 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGI- 80 +A++G N GKSTL NR VG ++++V + TR G + +VF +DT G+ Sbjct: 3 TIAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREG--EARLGDLVFKIIDTAGLE 60 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A S M + I+ AD V + D+ L + + + LILI NK Sbjct: 61 EGAAASLSGRMRAQTERAIESADAVFFLFDARLGLTPDDRFFANLVRRADKPLILIANKA 120 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + R+ E + + +SA G G D+ + + LP Sbjct: 121 EG----RIGEAGAREGYDLGLGDPVPLSAEHGDGMSDLYSAIREALP 163 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 24/199 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE-KESQIVFLDTPGI--- 80 +A++G NAGKSTL+N +G + + TR + GI E +I DT G+ Sbjct: 198 IAIIGRPNAGKSTLLNTIIGQDRLLTGPEPGLTRDTI-GIDFEWGGRKIKMFDTAGLRRR 256 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILN 138 +D KL + K A++ L++D+ + DL L ++ +R R L++ +N Sbjct: 257 AKVEDKLEKLAGHDAVRAAKFAEVAVLLLDAT--IPFEKQDLTLADLVEREGRALVIGVN 314 Query: 139 KIDCV--KPERLLEQAEIANKLVFIEKTFMV---SATKGHGCD----------DVLNYLC 183 K D + + +L E E A +L+ K V S G G +V N Sbjct: 315 KWDLIEHRGAKLSELREEAIRLLPQVKGAPVVPLSGATGDGVGKLMEAIFRVHEVWNKRI 374 Query: 184 STLPLAPWVYSADQISDLP 202 ST L W+ A + S P Sbjct: 375 STARLNRWLAGALEQSPPP 393 >gi|302533632|ref|ZP_07285974.1| LOW QUALITY PROTEIN: ribosome-associated GTPase EngA [Streptomyces sp. C] gi|302442527|gb|EFL14343.1| LOW QUALITY PROTEIN: ribosome-associated GTPase EngA [Streptomyces sp. C] Length = 496 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 46 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 105 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ + ++K + + ++L NK+D Sbjct: 106 VLGIDASVAAQAEYAIETADAVVFVVDAKVGATDSDEAVVKLLRRAGKPVVLCANKVDGQ 165 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E + A + + + + + VS+ G G D+L+ + LP AP Sbjct: 166 SGE--ADAAYLWS--LGLGMPYPVSSLHGRGTGDMLDAVLEVLPEAP 208 >gi|163802746|ref|ZP_02196636.1| GTP-binding protein HflX [Vibrio sp. AND4] gi|159173453|gb|EDP58275.1| GTP-binding protein HflX [Vibrio sp. AND4] Length = 429 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TVSLVGYTNAGKSTLFNRITQAGVYAADQLFATLDPTLRKIELADVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE +H++L+EI ++++ Sbjct: 257 RHLPHDLVAAFKATLKETQEADILLHVVDASDERFRENIQAVHEVLEEIDADEVPTLVVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ ++ I + + VSA G G + + + L L Sbjct: 317 NKIDNLEEQK----PRIERDEEGVPRAVWVSAMDGLGIELLFDALTERL 361 >gi|312876388|ref|ZP_07736373.1| GTP-binding proten HflX [Caldicellulosiruptor lactoaceticus 6A] gi|311796882|gb|EFR13226.1| GTP-binding proten HflX [Caldicellulosiruptor lactoaceticus 6A] Length = 509 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+++G TNAGKSTL+NR A V +V K+ T V K + + DT G Sbjct: 352 VVSIIGYTNAGKSTLMNRISKADV-LVEDKLFATLDTTTRRVYHKGKEFLLTDTVGFI-- 408 Query: 84 KDSYHKLMIRLSWS--TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 ++ H L+ S + +K+++++ VVD + +KV+ DLLK++ + LI + Sbjct: 409 RNLPHHLVEAFSSTLEEVKYSNLILNVVDISDPYYYDHIKVS-EDLLKQLGAENIPLIRV 467 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 NKID V L ++ + + + +SA G G D +L+ + Sbjct: 468 YNKIDKVD----LSSVDVFDNVPHV----FISAQDGRGIDTLLDMIV 506 >gi|295094896|emb|CBK83987.1| ribosome-associated GTPase EngA [Coprococcus sp. ART55/1] Length = 440 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 19/181 (10%) Query: 6 ITFFNEH-KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 ++ FNE KD +D +A++G N GKS+++N+ +G IV+ TTR V Sbjct: 162 VSHFNESAKDDTEDERPR--IAIIGKPNVGKSSIINKLLGEDRVIVSDIAGTTRDAVDTE 219 Query: 65 VSEKESQIVFLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 + + VF+DT G+ K+ + I + S ++ ++ LV+D+ I D Sbjct: 220 IVRNGREYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERCNVAVLVIDATE----GITD 275 Query: 122 LLKEIA----KRSSRLILILNKIDCV-KPERLLEQ--AEIANKLVFI--EKTFMVSATKG 172 +IA R +I+ +NK D + K ++ + + EI NKL ++ + +SA G Sbjct: 276 QDAKIAGIAHDRGKGMIIAVNKWDAIEKNDKTIYKFTEEIRNKLSYMPYAELLFISAQTG 335 Query: 173 H 173 Sbjct: 336 Q 336 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N G K+SIV TR + ++ + +DT GI Sbjct: 5 IVAIVGRPNVGKSTLFNVLAGEKISIVQDTPGVTRDRIYADINWLDYNFTLIDTGGIEPE 64 Query: 84 KDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 D+ K M + I+ AD++ + D R+ V+ + ++ +RS + ++L++NK+D Sbjct: 65 SDNIILKSMREQAEIAIETADVILFMTDV-RQGMVDDDAKVADMLRRSKKPIVLVVNKVD 123 Query: 142 C 142 Sbjct: 124 S 124 >gi|294776607|ref|ZP_06742076.1| small GTP-binding protein domain protein [Bacteroides vulgatus PC510] gi|294449522|gb|EFG18053.1| small GTP-binding protein domain protein [Bacteroides vulgatus PC510] Length = 396 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 23/172 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L G N+GKS+L+N G ++V+ TT ++ + + + +F+DTPG F+ Sbjct: 14 IVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFIDTPG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD---LLKEIAKRSSRLILILNKI 140 + ++ I + I+ DI L+ + N D ++++ KR+ +ILILNK Sbjct: 73 EGELGEMRITRTLKAIERTDIALLLCEDG-----NCEDEKQWMEQLNKRNIPVILILNKA 127 Query: 141 DCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCSTLP 187 D K +IA+ IEK ++SA + G + +L + LP Sbjct: 128 DIRK--------DIASTRDCIEKECGQNPLIISAKEQTGIEKILQAILEKLP 171 >gi|282934246|ref|ZP_06339523.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] gi|281301720|gb|EFA93987.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] Length = 332 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G A+VG N GKS+L+N +IVT TTR + VS + + +DT G Sbjct: 221 RNGLATAIVGRPNVGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL 115 I + +D K+ + S I+ AD+V L++++ L Sbjct: 281 IHHTEDKVEKIGVERSKKAIEQADLVLLLLNASEAL 316 >gi|222100001|ref|YP_002534569.1| GTP-binding protein engB [Thermotoga neapolitana DSM 4359] gi|254783217|sp|B9K8C0|ENGB_THENN RecName: Full=Probable GTP-binding protein EngB gi|221572392|gb|ACM23204.1| GTP-binding protein engB [Thermotoga neapolitana DSM 4359] Length = 195 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 28/180 (15%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G VA VG +N GKS+L+N K++ V+ TRSI +V+ S+ F+D PG Sbjct: 24 GEVAFVGRSNVGKSSLLNALFNRKIAYVSKTPGKTRSINFYLVN---SRYYFVDLPGYGY 80 Query: 83 AKDSYHKLMIRLSWSTIKH--------ADIVCLVVDSH---RELKVNIHDLLKEIAKRSS 131 AK S + R+ W + +V L+VD +E + + + LK + + Sbjct: 81 AKVSKKE---RVQWKKLVEDYFTNRWSLQMVFLLVDGRIPPQETDLMMVEWLKSL---NV 134 Query: 132 RLILILNKIDCVK----PERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVLNYLCSTL 186 ++L K+D VK ++L E + +K + E T + S+ G G DD+LN L STL Sbjct: 135 PFTIVLTKMDKVKMSERKKKLDEHKKAFSK--YGEYTIIPTSSVTGEGIDDLLN-LISTL 191 >gi|170755107|ref|YP_001782715.1| GTP-binding protein [Clostridium botulinum B1 str. Okra] gi|169120319|gb|ACA44155.1| GTP-binding protein [Clostridium botulinum B1 str. Okra] Length = 594 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 27/210 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ--------TTRSIVRGIVSEKESQIVFL- 75 V+LVG TNAGKSTL N+ ++ +K + T I +S ++I+ L Sbjct: 364 VSLVGYTNAGKSTLRNKLCDTGIASAQNKEKVFEADMLFATLDITTRAISLPNNEIITLT 423 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 DT G + H+L+ + + + ++D++ V+D + +++ ++++L+E+ Sbjct: 424 DTVGF--VRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDA-VNNVLEELGT 480 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + +IL+ NKID V ERL +K EK +SA G +D+L + TLP Sbjct: 481 ENKPIILVFNKIDKVSMERL---NYFRDKFKD-EKVIEISARLGINLEDLLKLIEETLPY 536 Query: 189 ----APWVYSADQISDLPMFHFTAEITREK 214 A ++ D+ + H ++I E+ Sbjct: 537 KLSEAEYIIPYDKQKSVAFLHRNSKIIEEE 566 >gi|294792403|ref|ZP_06757550.1| tRNA modification GTPase TrmE [Veillonella sp. 6_1_27] gi|294456302|gb|EFG24665.1| tRNA modification GTPase TrmE [Veillonella sp. 6_1_27] Length = 461 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 13/159 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG NAGKS+L+N + +IVT TTR + ++ + + +DT G Sbjct: 221 RDGITTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D+ L + + I ADIV V+D L ++L ++ ++ I++LNK Sbjct: 281 IRDTQDTVEALGVERARDYINKADIVLCVIDGSTPLNPEEIEILTSVSGLNT--IVLLNK 338 Query: 140 ID---CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 D V E + E IE+ +SA +G G Sbjct: 339 SDVAQVVTDENIKEHG----TFTAIER---ISAKEGEGS 370 >gi|283955141|ref|ZP_06372643.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 414] gi|283793354|gb|EFC32121.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 414] Length = 460 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 7/160 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L+G N GKS+L NR +++I + TTR + + + + +D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIFIHSKKAILIDSGGL-DE 61 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K + + + +K +DI+ +VD + K + L++NK+D Sbjct: 62 SDELFKNVKKNTLKVVKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNK 121 Query: 144 KPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K E E+A E AN +++ F +S T G D++ ++L Sbjct: 122 KDE---ERAWEFAN--FGVKEIFNLSVTHNVGLDELYDWL 156 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L+N V + S+V+ TT V + K+ I F+DT GI Sbjct: 198 VGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESIVHKDKVIEFVDTAGIRKRG 257 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + + + + H+ I LV+D+H EL I L +AK +I++LNK Sbjct: 258 KIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGL---VAKHYLGVIIVLNK 314 Query: 140 IDCVK 144 D K Sbjct: 315 WDKSK 319 >gi|218516154|ref|ZP_03512994.1| GTP-binding protein EngA [Rhizobium etli 8C-3] Length = 284 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG K+++V TR G +DT G+ A Sbjct: 4 TVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEEA 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 ++S M + + I AD+ VVD+ L L + + +R ++L+ NK Sbjct: 64 DEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+++ VA+VG NAGKSTL+NRF+G + + TR + + I DT Sbjct: 198 DDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDT 257 Query: 78 PGI 80 G+ Sbjct: 258 AGM 260 >gi|150002947|ref|YP_001297691.1| putative GTP-binding protein, putative GTPase [Bacteroides vulgatus ATCC 8482] gi|149931371|gb|ABR38069.1| putative GTP-binding protein, putative GTPase [Bacteroides vulgatus ATCC 8482] Length = 396 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 23/172 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L G N+GKS+L+N G ++V+ TT ++ + + + +F+DTPG F+ Sbjct: 14 IVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFIDTPG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD---LLKEIAKRSSRLILILNKI 140 + ++ I + I+ DI L+ + N D ++++ KR+ +ILILNK Sbjct: 73 EGELGEMRITRTLKAIERTDIALLLCEDG-----NCEDEKQWMEQLNKRNIPVILILNKA 127 Query: 141 DCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVLNYLCSTLP 187 D K +IA+ IEK ++SA + G + +L + LP Sbjct: 128 DIRK--------DIASTRDRIEKECGQNPLIISAKEQTGIEKILQAILEKLP 171 >gi|122702259|emb|CAL88320.1| GTPase [Helicobacter pylori] gi|122702335|emb|CAL88358.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----TPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|186476174|ref|YP_001857644.1| GTP-binding protein EngA [Burkholderia phymatum STM815] gi|238691310|sp|B2JIU7|DER_BURP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|184192633|gb|ACC70598.1| small GTP-binding protein [Burkholderia phymatum STM815] Length = 446 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 13/176 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVN +G I TTR + + + +DT G+ Sbjct: 183 IAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERQGKKYTLIDTAGLRKRG 242 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + +I A++V L++D+ +++ + + ++ L++ +NK D Sbjct: 243 KVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDAHIAGFVVEQGRALVVGVNKWD 302 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLCSTLP 187 + P R ++++ KL F+E K +SA + G DD S LP Sbjct: 303 GLDPHVRERTKSDLQRKLKFLEFAKFHFISAAEKTGIGPLMRSVDDAYKAAMSKLP 358 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 4/124 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 +ALVG N GKSTL NR ++ ++V TR G V + +V +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGGERPYLV-VDTGGFE 62 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 AKD M R + ++ +D++ +VD L + + K + L++NK Sbjct: 63 PVAKDGILFEMARQTRQAVEESDVIVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKA 122 Query: 141 DCVK 144 + +K Sbjct: 123 EGMK 126 >gi|320108428|ref|YP_004184018.1| GTP-binding proten HflX [Terriglobus saanensis SP1PR4] gi|319926949|gb|ADV84024.1| GTP-binding proten HflX [Terriglobus saanensis SP1PR4] Length = 500 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 17/160 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N A V + T +R V +++ DT G Sbjct: 251 TVALVGYTNAGKSTLFNALTEAGVLASSRMFATLDPKLRQFVLPSRRKVLLSDTVGFI-- 308 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 ++ H L+ R + ++ A+++ V D+ E K+ + +L E+ + I +L Sbjct: 309 RNLPHALVTSFRATLEEVERAELLLHVRDASSAILEEQKMQVEAVLAELEVARTPRIEVL 368 Query: 138 NKIDCV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NKID + +PE +QA + K V +SA KG G D Sbjct: 369 NKIDLLSEPE---QQALLGRKDV-----IAISAAKGVGLD 400 >gi|268610510|ref|ZP_06144237.1| putative tRNA modification GTPase [Ruminococcus flavefaciens FD-1] Length = 453 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 8/155 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKSTL N G + SIVT TTR IV V + + DT GI + D Sbjct: 222 AIIGRPNVGKSTLFNCLSGCERSIVTDIAGTTRDIVEESVRLGDITLRLSDTAGIHDTDD 281 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 + + ++ I A++V V D L + L+ +I K S I ++NK D Sbjct: 282 VIEGIGVDMAEKMIDKAELVLAVFDGSCPLTEDDLYLVNKINK--SNTIAVINKSDV--- 336 Query: 146 ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 E+ L+ E+ + I +SA + G D+ N Sbjct: 337 EQKLDINELTKYFIHI---VYISAKENSGVIDLKN 368 >gi|148244763|ref|YP_001219457.1| Era/TrmE family GTP-binding protein [Candidatus Vesicomyosocius okutanii HA] gi|146326590|dbj|BAF61733.1| GTP-binding protein, Era/TrmE family [Candidatus Vesicomyosocius okutanii HA] Length = 465 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 19/181 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV---SEKESQIVFLDTPGIF 81 + L+G N GKSTL NR ++ ++V+ TR V + ++ +DT G Sbjct: 6 ICLIGRPNVGKSTLFNRLSHSRQALVSDFAGLTRDRQYAKVLLNDDTQTFTTIIDTGGFT 65 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL----ILIL 137 N + + S ++ +D++ +++S R+ +++ DL EIA RL IL+ Sbjct: 66 NKVNLVDSGIQDQILSALEESDVIYFILNS-RDGVISL-DL--EIASHLRRLKKNIILVC 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK + + P E E+ + K ++SA G G D+++N +TLPL P V ++ Sbjct: 122 NKAEGLNPTLTTEFFELG-----LGKPILISAEHGQGIDNLIN---TTLPLLPKVTVNEE 173 Query: 198 I 198 + Sbjct: 174 V 174 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL+N + K I TTR + K Q +DT GI Sbjct: 179 TIAVLGKPNVGKSTLINHILREKRVIAIDLPGTTRDSIYIPFERKGQQYTLIDTAGIRRK 238 Query: 84 KDSYHKLMIRLSWSTI---KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ K+ I TI + A +V LV+D+ + LL I + L++++NK Sbjct: 239 NSTHEKIEIFSIIKTINALERAHVVILVLDAQTGVTKQDASLLGMILDKDKALLIVINKW 298 Query: 141 DCVKPERLLE-QAEIANKLVFIEKTFM--VSATKGHGCDDVL 179 D + + E + ++ KL FI T + +SA G G D + Sbjct: 299 DGLDDYQKQEVKRKLEVKLSFISYTSVHYISALHGSGVDKLF 340 >gi|77164340|ref|YP_342865.1| small GTP-binding protein domain-containing protein [Nitrosococcus oceani ATCC 19707] gi|254434862|ref|ZP_05048370.1| GTPase, putative [Nitrosococcus oceani AFC27] gi|123757906|sp|Q3JCW1|DER_NITOC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|76882654|gb|ABA57335.1| Small GTP-binding domain protein [Nitrosococcus oceani ATCC 19707] gi|207091195|gb|EDZ68466.1| GTPase, putative [Nitrosococcus oceani AFC27] Length = 464 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + VALVG N GKSTL NR ++ ++V + TR G+ E +DT G+ Sbjct: 2 NALVALVGRPNVGKSTLFNRLTRSRDALVVDQPGVTRDRKYGLAHYGEQSFFVVDTGGVM 61 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL 115 + +LM + I+ AD++ +VD L Sbjct: 62 EQESGIGRLMRAQAQLAIEEADVIFFLVDGREGL 95 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 6/160 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK- 84 A++G N GKSTLVNR +G + + + TTR + +DT GI Sbjct: 180 AVIGRPNVGKSTLVNRILGEERVLSSEIPGTTRDSISIPFRHHGKDYTLVDTAGIRRRSR 239 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D K + S +I A +V LV+D+H + L I + +++ +NK D Sbjct: 240 ILDKVEKFSVIQSLQSIAIAQVVILVIDAHDSVVEQDLHLAGVILESGKGVVIAVNKWDG 299 Query: 143 VKPE-RLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL 179 + E R + ++ +L F+ + +SA G G D+ Sbjct: 300 LPLEQRQRVKTDLDRRLPFLVFARIHFISALHGSGVGDLF 339 >gi|329930826|ref|ZP_08284225.1| GTP-binding protein HflX [Paenibacillus sp. HGF5] gi|328934528|gb|EGG31033.1| GTP-binding protein HflX [Paenibacillus sp. HGF5] Length = 430 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Query: 21 RSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +SG V ALVG TNAGKSTL+NR A V I T R + ++V DT Sbjct: 204 KSGAVQIALVGYTNAGKSTLLNRLTAADVYIENQLFATLDPTSRVLELPSGKEVVLTDTV 263 Query: 79 GIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSR 132 G ++ H L+ R + AD++ VVD+ ++ + +L+++ Sbjct: 264 GFI--QNLPHDLVAAFRATLEEANEADLILHVVDASSPMRDEQMAVVQSILQDLGAADKP 321 Query: 133 LILILNKIDCVKPERL 148 I++ NK D +P +L Sbjct: 322 QIVLFNKKDACEPGQL 337 >gi|238852698|ref|ZP_04643108.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 202-4] gi|282852069|ref|ZP_06261427.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 224-1] gi|238834844|gb|EEQ27071.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 202-4] gi|282556829|gb|EFB62433.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 224-1] Length = 435 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV K TR + + + +DT GI Sbjct: 5 IVALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + I AD++ ++ D + + N+ + + ++ R+ + +IL +NK D Sbjct: 65 SGEIEEQIKAQAEIAIDEADVIVMLGDVTQHM-TNMDETIAKMLYRTKKPIILAVNKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + Sbjct: 123 -NPEQRTDIYDFYS--LGLGDPIPVSGSHGTGMGDLLDAIVG 161 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N+H+D D+ R +++G N GKS+LVN +G + IV++ TTR + + Sbjct: 168 NQHED---DSIR---FSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDG 221 Query: 70 SQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT GI Y K + + S I+ +DI LV+D+ ++ + Sbjct: 222 QKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAGYA 281 Query: 127 AKRSSRLILILNKIDCVKPE 146 +I+++NK D K + Sbjct: 282 HDAGRGVIIVVNKWDLPKKD 301 >gi|209695380|ref|YP_002263309.1| putative GTP-binding protein [Aliivibrio salmonicida LFI1238] gi|208009332|emb|CAQ79599.1| putative GTP-binding protein [Aliivibrio salmonicida LFI1238] Length = 453 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 13/138 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CVALVG TNAGKS+++ G++V + T + VR + + +I+ DT G Sbjct: 226 CVALVGYTNAGKSSMMRALTGSEVLVEDKLFATLDTTVRALYPVTQPRILVSDTVGFI-- 283 Query: 84 KDSYHKLMIRL--SWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 K H L+ + + A ++ VVD+ +L V +H++LKE+ + +L+ Sbjct: 284 KKLPHDLVASFHSTLAEAHDASLLLYVVDASDASFRTQLDV-VHEVLKEVGVEDVKKLLV 342 Query: 137 LNKIDCV---KPERLLEQ 151 LNK D + + E L+E+ Sbjct: 343 LNKSDQLTVEQQEELMEE 360 >gi|303247604|ref|ZP_07333875.1| tRNA modification GTPase TrmE [Desulfovibrio fructosovorans JJ] gi|302491084|gb|EFL50978.1| tRNA modification GTPase TrmE [Desulfovibrio fructosovorans JJ] Length = 465 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 8/160 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL G NAGKS+L N F+G ++V + TTR + + + DT G+ Sbjct: 228 VALFGKVNAGKSSLFNAFLGTDRALVADQPGTTRDYLEEGLDLDGVPVRLTDTAGLRETP 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--IHDLLKEIAKRSSRLILILNKIDC 142 D+ + AD+ VVD + LL+E+ R R+++++NK D Sbjct: 288 DAVEAAGKKRGRDVAGRADLGLYVVDGAAPYAPDPEAEALLEELGPR--RVLVVVNKADL 345 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 E + A L +T VSA G G +L + Sbjct: 346 PAAEPGAAKKLKARGL----ETVAVSARTGFGLTGLLTAM 381 >gi|302866049|ref|YP_003834686.1| GTP-binding proten HflX [Micromonospora aurantiaca ATCC 27029] gi|302568908|gb|ADL45110.1| GTP-binding proten HflX [Micromonospora aurantiaca ATCC 27029] Length = 487 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T R + DT G Sbjct: 256 AVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTTRRATTSDGRLYTLSDTVGFV-- 313 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H+++ R + + AD+V VVD E + ++L E+ +L++ Sbjct: 314 RHLPHQIVEAFRSTLEEVADADLVVHVVDGTHPDPEEQVRAVREVLAEVGADRLPELLVV 373 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D E +L + VF VSA G G D++ + LP Sbjct: 374 NKTDATDEETMLRLKRLWPDAVF------VSAHSGRGIDEMREAVERRLP 417 >gi|255658317|ref|ZP_05403726.1| putative GTP-binding protein HflX [Mitsuokella multacida DSM 20544] gi|260849636|gb|EEX69643.1| putative GTP-binding protein HflX [Mitsuokella multacida DSM 20544] Length = 615 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 4/126 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR VALVG TNAGKSTL+N+ GA+V T R +V ++ +I+ DT G Sbjct: 378 SRIPLVALVGYTNAGKSTLLNKLTGAEVFAEDKLFATLDPTTRHLVLPEKQEILLTDTVG 437 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLIL 135 R + ++ AD++ VVD ++ + ++ ++LKE+ + Sbjct: 438 FIQKLPHTLVKAFRATLEEVQEADLLLHVVDCSNENYEQQIESVVEVLKELDAVDKPTLY 497 Query: 136 ILNKID 141 + NK D Sbjct: 498 VFNKAD 503 >gi|223557988|gb|ACM90994.1| GTPase [uncultured bacterium URE4] Length = 424 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 3/133 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D+S +A+VG N GKS+L N +G + +IVT TTR + ++ + + +D Sbjct: 159 EDHSDIPHIAIVGRPNVGKSSLTNALLGEERNIVTPVAGTTRDSISTYYNKFGHEFMLVD 218 Query: 77 TPGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ L + + TI+H+D+ L++D+ ++ ++ I K Sbjct: 219 TAGMRKRAKVTEDLEFYSVLRAMRTIEHSDVCILMIDATLGMEAQDMNIFNIIQKNRKGC 278 Query: 134 ILILNKIDCVKPE 146 ++++NK D + E Sbjct: 279 VIVVNKWDLFEKE 291 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 13/159 (8%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NAKDSYHKLMI 92 GKSTL NR VG + +IV TR G ++ +DT G N+ D + + Sbjct: 2 GKSTLFNRLVGMRQAIVDETAGVTRDRHYGKCEWCGTEFSVVDTGGYTSNSDDVFEDAIR 61 Query: 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILILNKIDCVKPERL 148 R ++ AD+V + E + I D EIA +RS + ++L +NK+D E++ Sbjct: 62 RQVVIAVEEADVVLFMC----EAQTGITDYDAEIADLLRRSKKPVVLCVNKVDT--GEKM 115 Query: 149 LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + + + + +SA G G D+L+ + LP Sbjct: 116 YDAYDFYG--LGLGEVWTISAANGSGTGDLLDEIVKVLP 152 >gi|328881436|emb|CCA54675.1| GTP-binding protein EngA [Streptomyces venezuelae ATCC 10712] Length = 482 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 46 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 105 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD VVD+ ++K + + ++L NK+D Sbjct: 106 VLGIDASVAAQAEYAIEAADACLFVVDATVGATDTDEAVVKLLRRAGKPVVLAANKVDGQ 165 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A + L E F VS+ G G D+L+ + LP AP Sbjct: 166 SGE---ADAAMLWSLGLGEP-FPVSSLHGRGTGDLLDEVLRKLPEAP 208 >gi|329114580|ref|ZP_08243339.1| GTP-binding protein HflX [Acetobacter pomorum DM001] gi|326696060|gb|EGE47742.1| GTP-binding protein HflX [Acetobacter pomorum DM001] Length = 439 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 31/194 (15%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N GA V T +R I +++ DT G + Sbjct: 211 VVALVGYTNAGKSTLFNALTGATVYAQDQLFATLDPTMRAIDLPSGRRVILSDTVGFISD 270 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRE---LKVNIHDLLKEIAKRS-------SR 132 + R + + ADI+ V D +H + K ++ +L+ +AK R Sbjct: 271 LPTELIAAFRATLEEVAEADIILHVRDVAHPDSAAQKKDVLGVLEGMAKDDMLEQDWPER 330 Query: 133 LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS-------- 184 +I +LNK+D + + Q E T +SA G G + +L + + Sbjct: 331 IIEVLNKVDLLGGPEAIPQT---------EDTIAISAITGDGLETLLARIDARITQGMET 381 Query: 185 ---TLPLAPWVYSA 195 LPLA SA Sbjct: 382 VRYRLPLADGAASA 395 >gi|123965688|ref|YP_001010769.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9515] gi|166225838|sp|A2BV51|DER_PROM5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123200054|gb|ABM71662.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9515] Length = 458 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 9/178 (5%) Query: 13 KDF-VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 KDF V+D ++++G N GKS+L+N G K +IV+ TT + ++ + Sbjct: 167 KDFDVEDKEDKVMMSIIGRPNVGKSSLLNAICGEKRAIVSDISGTTTDSIDTLIKKNSHL 226 Query: 72 IVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +DT GI N K I ++ +I +D+ LV+D+ + L I + Sbjct: 227 WKIVDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQDQKLAGRIEE 286 Query: 129 RSSRLILILNKIDCV-KPERLLEQA--EIANKLVFI--EKTFMVSATKGHGCDDVLNY 181 + ++++NK D V K + Q E+ +KL F+ K +SA G +++ + Sbjct: 287 QGRACVIVVNKWDLVEKNNSTIYQVEKELRSKLYFLHWSKMIFISALTGQRVENIFEH 344 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR + +IV K TR S + +DT G+ Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQVVDTGGLVFED 65 Query: 85 DSYHKLMIRLS-WSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 DS IR + ++ A I VVD ++ + + K + + I+ +NK C Sbjct: 66 DSEFLPEIRTQVFLALEEASIALFVVDGNQGVTTGDLSIAKWLRNSDCKTIVAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + A KL E + VSA G G D+L+ + LP Sbjct: 124 SLSLGISMASEFWKLGLGE-PYPVSAIHGSGTGDLLDLVIDELP 166 >gi|167646573|ref|YP_001684236.1| GTP-binding proten HflX [Caulobacter sp. K31] gi|167349003|gb|ABZ71738.1| GTP-binding proten HflX [Caulobacter sp. K31] Length = 446 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 78/179 (43%), Gaps = 17/179 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR A V T +R + + DT G + Sbjct: 215 TVALVGYTNAGKSTLFNRLTHATVVAQDMLFATLDPTLRNVKLPDGRPAILSDTVGFIS- 273 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD--------SHRELKVNIHDLLKEIAKRSSRL 133 D H+L+ R + ++ AD+V V D R+++V + + LK A+ + Sbjct: 274 -DLPHELVEAFRATLEEVQEADVVLHVRDVANPDTDAQARDVQVVLAE-LKVTAEDGKTI 331 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWV 192 I + NKID V E EI + VSA G GC ++L + + + P V Sbjct: 332 IEVWNKIDLVDG----EAREILDGQARRLGASAVSAVTGEGCAELLKRVGTLIDDTPPV 386 >gi|27904530|ref|NP_777656.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839495|sp|P59569|MNME_BUCBP RecName: Full=tRNA modification GTPase mnmE gi|27903927|gb|AAO26761.1| putative tRNA modification GTPase trmE [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 459 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + GA N+GKS+L+N +IVT+ TTR ++ + + +DT G+ Sbjct: 222 VVISGAPNSGKSSLLNALSLTNRAIVTNFPGTTRDVIYENIIINGVLFILIDTAGLRITN 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILILNKID 141 + + I +W+ IK A+ + V+D R ++ N ++ +K ++K +S + ++ NK D Sbjct: 282 NPIENIGIERAWNEIKLAEHILFVIDGSRSVQNQLKNYNNFIKSLSK-TSCITIVFNKSD 340 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L + +I + L + +VS+ G G + + +L Sbjct: 341 -------LSKFKINSDLRNLNNGVLVSSKTGVGIEALRQHL 374 >gi|300361577|ref|ZP_07057754.1| ribosome-associated GTPase EngA [Lactobacillus gasseri JV-V03] gi|300354196|gb|EFJ70067.1| ribosome-associated GTPase EngA [Lactobacillus gasseri JV-V03] Length = 435 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV K TR + + + +DT GI Sbjct: 5 IVALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + I AD++ ++ D + + N+ + + ++ R+ + +IL +NK D Sbjct: 65 SGEIEEQIKAQAEIAIDEADVIVMLGDVTQHM-TNMDETIAKMLYRTKKPIILAVNKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + Sbjct: 123 -NPEQRTDIYDFYS--LGLGDPIPVSGSHGTGMGDLLDAIVG 161 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N+H+D D+ R +++G N GKS+LVN +G + IV++ TTR + + Sbjct: 168 NQHED---DSIR---FSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDG 221 Query: 70 SQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT GI Y K + + S I+ +DI LV+D+ ++ + Sbjct: 222 QKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAGYA 281 Query: 127 AKRSSRLILILNKIDCVKPE 146 +I+++NK D K + Sbjct: 282 HDAGRGVIIVVNKWDLPKKD 301 >gi|218529834|ref|YP_002420650.1| tRNA modification GTPase TrmE [Methylobacterium chloromethanicum CM4] gi|218522137|gb|ACK82722.1| tRNA modification GTPase TrmE [Methylobacterium chloromethanicum CM4] Length = 444 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 23/163 (14%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CV L GA NAGKSTL+N G +IV+ TTR + +V +DT G+ Sbjct: 226 CVVLAGAPNAGKSTLLNALSGRDAAIVSDIPGTTRDAIDVRCDLGGLPVVLVDTAGLRET 285 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-IHDLLKEIAKRSSRLILILNKIDC 142 D+ ++ + S I+ AD+V +V + E D+ ++L+ K D Sbjct: 286 ADAIEAEGVKRTQSRIRSADLVLHLVPADGEADAGRFADV---------PVLLVRTKTD- 335 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + PE E + +SA G G D +L+ + ++ Sbjct: 336 LAPEG------------PGEGSLAISAVTGAGLDALLDAIQAS 366 >gi|329904161|ref|ZP_08273691.1| GTP-binding protein EngA [Oxalobacteraceae bacterium IMCC9480] gi|327548117|gb|EGF32835.1| GTP-binding protein EngA [Oxalobacteraceae bacterium IMCC9480] Length = 340 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 6/171 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKST+VN +G + I TTR + Q +DT GI Sbjct: 137 IAIVGRPNVGKSTMVNTLLGEERVIAFDMPGTTRDSIEIPFERSGQQYTLIDTAGIRRRG 196 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + +I A++V L++D+ +++ + I + L++ +NK D Sbjct: 197 KVFEAIEKFSVVKTLQSISEANVVLLLLDAQQDISEQDAHIAGFILESGRALVVGVNKWD 256 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 + R E + ++ KL F+ K +SA K G D ++ + S A Sbjct: 257 GLTSSRRDEIKIDLDRKLDFLSFAKFHYISALKATGVDQLMKSINSAYAAA 307 >gi|269798908|ref|YP_003312808.1| tRNA modification GTPase TrmE [Veillonella parvula DSM 2008] gi|269095537|gb|ACZ25528.1| tRNA modification GTPase TrmE [Veillonella parvula DSM 2008] Length = 461 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG NAGKS+L+N + +IVT TTR + ++ + + +DT GI + +D+ Sbjct: 228 IVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDT 287 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 L + + I ADIV V+D L ++L ++ ++ I++LNK D + Sbjct: 288 VEALGVERARDYINKADIVLCVIDGSTSLTPEEIEILTSVSGLNT--IVLLNKSDVAQ 343 >gi|206900693|ref|YP_002251652.1| tRNA modification GTPase TrmE [Dictyoglomus thermophilum H-6-12] gi|206739796|gb|ACI18854.1| tRNA modification GTPase TrmE [Dictyoglomus thermophilum H-6-12] Length = 455 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 16/164 (9%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-FLDTP 78 R G V LVG N GKS+L N + +IVT TTR + G + +V DT Sbjct: 216 REGYGVILVGRPNVGKSSLFNALMREDRAIVTPIPGTTRDYIEGELYLSSGHLVKIYDTA 275 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILIL 137 G+ KD K+ + + ++ ++++ VVD E +LL++I + ++ +LIL++ Sbjct: 276 GLGIPKDILDKMGMERTEKILEKSNLILFVVDGSCEASEEEINLLEKIKSYQNKKLILVV 335 Query: 138 NKIDCVKPERLLEQAEIANKLVF---IEKTFMVSATKGHGCDDV 178 NKID P+++ + VF IEK F VSA + G +++ Sbjct: 336 NKIDL--PQKV-------DLSVFPKDIEKIF-VSAKERKGIEEI 369 >gi|169827483|ref|YP_001697641.1| GTP-binding protein [Lysinibacillus sphaericus C3-41] gi|168991971|gb|ACA39511.1| GTP-binding protein [Lysinibacillus sphaericus C3-41] Length = 211 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + I+ AD++ + + + + K + K ++L +NKID Sbjct: 65 DEPFLEQIRQQAEIAIEEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKID-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + E L F E + +S + G G D+L+ P Sbjct: 123 NPD-MREMIYDFYALGFGEP-WPISGSHGLGLGDLLDECAKHFP 164 >gi|205422403|sp|A2SMI8|MNME_METPP RecName: Full=tRNA modification GTPase mnmE Length = 471 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G + E D V ++ G V L G N GKS+L+N GA+++IVT T Sbjct: 207 GRLARIAEALDAVLARAKQGALLREGLRVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 266 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 TR V + + + +DT G+ +A+D ++ ++ SW I AD V + D R Sbjct: 267 TRDKVAETIQIEGVPLHVVDTAGLRAEDDARDEVERIGMQRSWGAIGEADAVIFLHDLTR 326 >gi|329939204|ref|ZP_08288578.1| GTP-binding protein EngA [Streptomyces griseoaurantiacus M045] gi|329302089|gb|EGG45982.1| GTP-binding protein EngA [Streptomyces griseoaurantiacus M045] Length = 513 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 75 VLAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQD 134 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ +++ + K ++L NK+D Sbjct: 135 VLGIDASVAAQAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKVDGP 194 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A L E VSA G G D+L+ + LP AP Sbjct: 195 SGE---ADASYLWSLGLGEP-HPVSALHGRGTGDMLDKVLEALPEAP 237 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+L+N+ G + +V TTR V ++ F+DT GI Sbjct: 252 IALIGRPNVGKSSLLNKVAGEERVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 311 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + A I ++D+ + V ++ + ++L N Sbjct: 312 HLQQGADYYASLRTAAAVEKAEVAVI---LLDASENISVQDQRIVTMAVEAGRAVVLAFN 368 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 369 KWDTLDEER 377 >gi|315502608|ref|YP_004081495.1| gtp-binding proten hflx [Micromonospora sp. L5] gi|315409227|gb|ADU07344.1| GTP-binding proten HflX [Micromonospora sp. L5] Length = 487 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR GA V + T R + DT G Sbjct: 256 AVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTTRRATTSDGRLYTLSDTVGFV-- 313 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H+++ R + + AD+V VVD E + ++L E+ +L++ Sbjct: 314 RHLPHQIVEAFRSTLEEVADADLVVHVVDGTHPDPEEQVRAVREVLAEVGADRLPELLVV 373 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D E +L + VF VSA G G D++ + LP Sbjct: 374 NKTDATDEETMLRLKRLWPDAVF------VSAHSGRGIDEMREAVERRLP 417 >gi|124269008|ref|YP_001023012.1| tRNA modification GTPase TrmE [Methylibium petroleiphilum PM1] gi|124261783|gb|ABM96777.1| putative thiophene and furan oxidation protein [Methylibium petroleiphilum PM1] Length = 480 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Query: 4 GEITFFNEHKDFVQDNSRSGC-------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQT 56 G + E D V ++ G V L G N GKS+L+N GA+++IVT T Sbjct: 216 GRLARIAEALDAVLARAKQGALLREGLRVVLAGQPNVGKSSLLNALAGAELAIVTPIAGT 275 Query: 57 TRSIVRGIVSEKESQIVFLDTPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 TR V + + + +DT G+ +A+D ++ ++ SW I AD V + D R Sbjct: 276 TRDKVAETIQIEGVPLHVVDTAGLRAEDDARDEVERIGMQRSWGAIGEADAVIFLHDLTR 335 >gi|122702457|emb|CAL88419.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K + I+ L+ + +D++ VVD S ++K L +EI K + L++ Sbjct: 67 KGALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREIFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|332527857|ref|ZP_08403894.1| GTP-binding protein Der [Rubrivivax benzoatilyticus JA2] gi|332112434|gb|EGJ12227.1| GTP-binding protein Der [Rubrivivax benzoatilyticus JA2] Length = 447 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 5/157 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR ++ +IV TR G + + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRITKSRDAIVADFAGLTRDRHYGDARLGGREFIVVDTGGFEPE 63 Query: 84 KDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K S M + + + AD+V V D + HD+ + + + ++IL +NK + Sbjct: 64 KPSGVVAEMAKQTRQAVAEADVVVFVADLRAGVSAQDHDIARFLRTQQKKVILAVNKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 + LL AE + I + +SA+ G G +L Sbjct: 124 MAESPLL--AEFHE--LGIGEPHPLSASHGQGVRSLL 156 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G N GKSTL+N ++G + + + TTR ++ + + + +DT G+ Sbjct: 183 LAVAGRPNVGKSTLINAWLGEERLVAFDQPGTTRDAIKVSLEREGRRFELIDTAGLRRKG 242 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I A++V L+VD+ + + + + ++L LNK D Sbjct: 243 KVFEAIEKFSVVKTLQAIADANVVVLMVDATVGVSEQDAHIAGYVLESGRAVVLALNKWD 302 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 +R Q I ++L F++ +SA K G Sbjct: 303 ATDEYQRQQLQRSIESRLAFLKFAPLLQISAKKRTGL 339 >gi|332534677|ref|ZP_08410508.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis ANT/505] gi|332035889|gb|EGI72371.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis ANT/505] Length = 476 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 10/159 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR +G IV TTR + ++ + + V +DT G+ K Sbjct: 192 LAIIGRPNVGKSTLTNRILGEDRVIVYDMPGTTRDSIYIPMTRNDKEYVLIDTAGVRKRK 251 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + + I+ ++V LVVD+ + LL L++ +NK D Sbjct: 252 KVSDVVEKFSVIKTLQAIEDCNVVLLVVDARDGISDQDLSLLGFALNSGRSLVIAVNKWD 311 Query: 142 CVKP---ERLLEQAEIANKLVFIE--KTFMVSATKGHGC 175 + +R+ + E+ +L FI+ + +SA G G Sbjct: 312 GLDDYVKDRI--KTELDRRLGFIDFARLHFISALHGTGV 348 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 51/113 (45%) Query: 34 GKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIR 93 GKSTL NR + ++V TR G S + + +DT GI +++ M Sbjct: 2 GKSTLFNRLTRTRDALVADFPGLTRDRKYGQASYDGYEFIVVDTGGIDGSEEGIEIEMAD 61 Query: 94 LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 S I+ ADIV +VD+ + V + + K+ + ++ NK D + + Sbjct: 62 QSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQEKKCFVVANKTDGIDAD 114 >gi|312794069|ref|YP_004026992.1| gtp-binding proten hflx [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181209|gb|ADQ41379.1| GTP-binding proten HflX [Caldicellulosiruptor kristjanssonii 177R1B] Length = 509 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+++G TNAGKSTL+NR A V +V K+ T V K + + DT G Sbjct: 352 VVSIIGYTNAGKSTLMNRISKADV-LVEDKLFATLDTTTRRVYHKGKEFLLTDTVGFI-- 408 Query: 84 KDSYHKLMIRLSWS--TIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 ++ H L+ S + +K+++++ VVD + +KV+ DLLK++ + LI + Sbjct: 409 RNLPHHLVEAFSSTLEEVKYSNLILNVVDISDPYYYDHIKVS-EDLLKQLGAENIPLIRV 467 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 NKID V L ++ + + + +SA G G D +L+ + Sbjct: 468 YNKIDKVD----LSSVDVFDNVPHV----FISAQDGRGIDTLLDMIV 506 >gi|251771600|gb|EES52176.1| GTP-binding protein (EngA) [Leptospirillum ferrodiazotrophum] Length = 468 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 6/169 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKSTL NR +G +I TR V++ +DT GI Sbjct: 13 LVAILGRPNVGKSTLFNRLLGENRAITMDMPGVTRDRHYATVTQGPYAYRLVDTGGILFG 72 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D IR + ++ AD++ + D+ +++++I + +NK D Sbjct: 73 DDHPLGEAIRKQALFALEEADLLIYLFDAKDGYNPMDREVVEKIRASGKPAVYAVNKSDA 132 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P R E +A+ + + VSA G G D++L L LP AP Sbjct: 133 --PTR--ESVLMADFYKYGVNPLVPVSALHGLGMDELLAPLAPYLPSAP 177 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A++G N GKSTL+N +G + + + TTR + +V+ K F+DT GI Sbjct: 210 IAVIGRPNVGKSTLINHLLGEERLVTSPLPGTTRDAIDTLVTWKGRPYRFVDTAGIRKRG 269 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A+ S +IR + T+ A+I +++ + L +++++ L+L+ NK Sbjct: 270 KIAEASEMYGIIR-TERTLIQAEIAVVLISTPDGLTDGDLRIIRQVIDARRGLVLVFNKW 328 Query: 141 DCVKPERLLEQAEIANKLVFI 161 D P+ + ++ + F+ Sbjct: 329 DATDPKEAPDLTKLGERYPFL 349 >gi|116629548|ref|YP_814720.1| GTP-binding protein EngA [Lactobacillus gasseri ATCC 33323] gi|116095130|gb|ABJ60282.1| Predicted GTPase [Lactobacillus gasseri ATCC 33323] Length = 427 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV K TR + + + +DT GI Sbjct: 5 IVALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + I AD++ ++ D + + N+ + + ++ R+ + +IL +NK D Sbjct: 65 SGEIEEQIKAQAEIAIDEADVIVMLGDVTQHM-TNMDETIAKMLYRTKKPIILAVNKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + Sbjct: 123 -NPEQRTDIYDFYS--LGLGDPIPVSGSHGTGMGDLLDAIVG 161 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 9/138 (6%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 N+H+D D+ R +++G N GKS+LVN +G + IV++ TTR + + Sbjct: 168 NQHED---DSIR---FSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDG 221 Query: 70 SQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + +DT GI Y K + + S I+ +DI LV+D+ ++ + Sbjct: 222 QKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAGYA 281 Query: 127 AKRSSRLILILNKIDCVK 144 +I+++NK D K Sbjct: 282 HDAGRGVIIVVNKWDLPK 299 >gi|300933035|ref|ZP_07148291.1| putative GTP-binding protein [Corynebacterium resistens DSM 45100] Length = 490 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 21/187 (11%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D++ VA+ G TNAGKS+L+N GA V + T R ++F D Sbjct: 260 RDSAAIAQVAIAGYTNAGKSSLINALTGAGVLVEDALFATLDPTTRRAELADGRAVIFTD 319 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS------HRELKVN--IHDLLKEIAK 128 T G + R + + AD+V VVD + + VN I ++++E + Sbjct: 320 TVGFVRHLPTQLVEAFRSTLEEVMAADVVLHVVDGSDPFPLEQIVAVNKVIGEIVEETGE 379 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV-------LNY 181 + IL++NKID P L AE+ ++L + VSA G G ++ LN Sbjct: 380 HAPPEILVVNKIDKADP---LVLAELRHRL---DDVVFVSAHSGEGISELETRLELFLNS 433 Query: 182 LCSTLPL 188 L S + L Sbjct: 434 LDSQVDL 440 >gi|238917198|ref|YP_002930715.1| GTP-binding protein HflX [Eubacterium eligens ATCC 27750] gi|238872558|gb|ACR72268.1| GTP-binding protein HflX [Eubacterium eligens ATCC 27750] Length = 413 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Query: 9 FNEHKDFVQDNSR----SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 EH+D VQ + R + A+VG TNAGKSTL+N+ A V T R + Sbjct: 184 MKEHRD-VQRSKRAKTSTSVAAIVGYTNAGKSTLLNKLTDAGVLSEDKLFATLDPTTRSM 242 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD----SHRELKVN 118 +++ DT G + H L+ + + K+ADI+ VVD + + Sbjct: 243 ELPNGEKVLLTDTVGFI--RKLPHNLIEAFKSTLEEAKYADIIVHVVDVSNPDYEQQMST 300 Query: 119 IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 ++ LK++ ++ + NK D + PE+ A K + + T+ +SA +G+G + Sbjct: 301 VYATLKQLGVEGKPVVTLFNKCDVL-PEK------PAAKDLHADYTYNISAVRGNGLE 351 >gi|224826453|ref|ZP_03699555.1| small GTP-binding protein [Lutiella nitroferrum 2002] gi|224601554|gb|EEG07735.1| small GTP-binding protein [Lutiella nitroferrum 2002] Length = 463 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 10/162 (6%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A++G N GKSTLVN +G + I + TTR + + +DT G+ Sbjct: 178 AVIGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSIYIDFERDDHTYTIIDTAGVRRRGK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNKI 140 ++ K + + I+ A++ LV+D+ +L ++ D + A + R L++ +NK Sbjct: 238 VNETIEKFSVIKTMKAIEDANVAVLVLDA--QLDISEQDATIAGFALEAGRALVVAVNKW 295 Query: 141 DCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 D + E + L + EIA KL F++ K +SA +G G D+ Sbjct: 296 DNIDTEQKELVKHEIARKLGFLDFAKFHFISAIEGRGIADLF 337 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 5/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR ++ ++V + TR G + + +DT G Sbjct: 4 TVALVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGHGRVGDKPYLVVDTGGFEPV 63 Query: 84 KDSYHKL-MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D M R + + AD + +VD + + + + + L++NK + Sbjct: 64 VDEGILFEMARQTLQAVDEADAIVFLVDGRTGITPQDKIIANRLRQNDRPVFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + + + AE ++L E +SA G G +++ + P A Sbjct: 124 I--SQSIAGAEF-HELALGE-PLAISAAHGDGVRELMEMVLEPFPAA 166 >gi|21231435|ref|NP_637352.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768511|ref|YP_243273.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris str. 8004] gi|188991681|ref|YP_001903691.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris str. B100] gi|26006714|sp|Q8P979|DER_XANCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81305517|sp|Q4UUM0|DER_XANC8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229807529|sp|B0RT56|DER_XANCB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21113105|gb|AAM41276.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573843|gb|AAY49253.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733441|emb|CAP51642.1| GTP-binding protein, probable [Xanthomonas campestris pv. campestris] Length = 465 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ E Q + +DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 ++ R + + AD+V VVD RE ++ D +L + K + +L++NKID Sbjct: 65 EEGLAGATARQARAAAGEADLVLFVVDG-REGASSLDDEILAWLRKLARPTVLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E + +SA G DD+L + + LP Sbjct: 124 TDEESV--RSEFSR--YGFSDVVALSAAHRQGIDDLLEEVGARLP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDGRQYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + QAE ++ KL F+ + +SA G G ++ + A +S + Sbjct: 301 G-QSDYQRAQAEDLLSRKLGFVNWAEAVRISALHGSGMRELFQAIHRAHASATHEFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|45644731|gb|AAS73119.1| probable GTP-binding protein [uncultured marine gamma proteobacterium EBAC20E09] Length = 338 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 75/173 (43%), Gaps = 13/173 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG NAGKST +N AK I + T R + G + KES V D PG+ Sbjct: 162 VGLVGFPNAGKSTFLNTVSSAKPKIGDYPFTTLRPHL-GAIKGKESSYVIADIPGLIEGA 220 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD----LLKEIAKRSSRLI-----L 135 L I+ I I+ + VD + D L KE+ L + Sbjct: 221 SDGAGLGIKF-LKHISRTGILLIFVDLFSLENIEPIDQVILLKKELDSFGDNLTQKVSWI 279 Query: 136 ILNKIDCVKPERLLE-QAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + NKID ++ ++ E EI KL V E+ F +SA G G + +L L S + Sbjct: 280 VCNKIDLLQETKINEISKEIEEKLQVTKEEIFFISAATGEGTEFLLKSLESEI 332 >gi|319891293|ref|YP_004148168.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus pseudintermedius HKU10-03] gi|317160989|gb|ADV04532.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus pseudintermedius HKU10-03] Length = 460 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 220 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ V++ + L + L + I + I+I+NK Sbjct: 280 IRETEDIVERIGVERSRKALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDA--IVIINK 337 Query: 140 IDCVKPERLLEQAEI 154 D E+ L+ AE+ Sbjct: 338 TDL---EQRLDLAEV 349 >gi|227503450|ref|ZP_03933499.1| HflX family GTP-binding protein [Corynebacterium accolens ATCC 49725] gi|227075953|gb|EEI13916.1| HflX family GTP-binding protein [Corynebacterium accolens ATCC 49725] Length = 502 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G TNAGKS+L+N A V + T R Q+VF DT G Sbjct: 276 IAIAGYTNAGKSSLINAMTNAGVLVEDALFATLDPTTRRASLADGRQVVFTDTVGFVRHL 335 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLILI 136 + + + + ADI+ VVD + I+D++ E +++ I++ Sbjct: 336 PTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNEVIYDIVSETGEQAPPEIIV 395 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +NKID P L E + + E VSA G G D++ Sbjct: 396 INKIDQADPLVLAELRHVLDH----EDVVYVSARTGEGIDEL 433 >gi|75907298|ref|YP_321594.1| small GTP-binding protein domain-containing protein [Anabaena variabilis ATCC 29413] gi|75701023|gb|ABA20699.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC 29413] Length = 206 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 + F QD S + +ALVG N GKS L N G V++ + TT + RG+ E Sbjct: 27 QQPFTQDVSHNPQIALVGMPNVGKSVLFNALTGIYVTVSNYP-GTTVEVSRGLAQIGEQS 85 Query: 72 IVFLDTPGIFN 82 I +DTPG+++ Sbjct: 86 ITVIDTPGMYS 96 >gi|319899518|ref|YP_004159615.1| tRNA modification GTPase [Bartonella clarridgeiae 73] gi|319403486|emb|CBI77066.1| tRNA modification GTPase [Bartonella clarridgeiae 73] Length = 435 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 10/139 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E ++D R + + GA N+GKS+++NR G V+IV+ + TTR + + Sbjct: 205 GERASILRDGIR---IVIAGAPNSGKSSIINRLSGRSVAIVSEEEGTTRDALEVRLVFGG 261 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 + F DT G+ K+ L I + I AD+V V D + +VN + K Sbjct: 262 LLVFFTDTAGLRKTKNKIELLGIETAKQHIMEADLVISVYDMNNPQEVN-------LPKT 314 Query: 130 SSRLILILNKIDCVKPERL 148 S+ + + NK+D + +++ Sbjct: 315 SAEIWHVGNKLDLCEGDKI 333 >gi|284989127|ref|YP_003407681.1| GTP-binding proten HflX [Geodermatophilus obscurus DSM 43160] gi|284062372|gb|ADB73310.1| GTP-binding proten HflX [Geodermatophilus obscurus DSM 43160] Length = 384 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VAL G TNAGKS L+NR GA V + T VR + DT G Sbjct: 223 SVALTGYTNAGKSALLNRLAGADVLVQDALFATLDPTVRRTRTPDGRPYTLTDTVGFV-- 280 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILIL 137 + H+L+ R + + AD+V VVD+ ++ + +L EI R +L L Sbjct: 281 RHLPHQLVDAFRSTLEEVVDADLVLHVVDASAPDAMDQVTAVRGVLHEIGARDHPELLAL 340 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NK+D V PE L A VSA G G +++ + L Sbjct: 341 NKVD-VAPEGWLAALRAA-----YPDAVPVSALTGEGAEELRRAIGERL 383 >gi|1902827|dbj|BAA19450.1| ORF4 [Leptospira interrogans] gi|2780770|dbj|BAA24373.1| ORF4; putative [Leptospira interrogans] Length = 435 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G N GKS+L+N +G + SI++ TTR + + + + +DT G+ Sbjct: 202 IVLYGEPNTGKSSLMNVLLGKERSIISEIPGTTRDYISEEIFLEGIPVRLVDTAGVRETT 261 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D KL I S + AD+ +VD + K N + + + +R ILI NKID + Sbjct: 262 DHIEKLGIERSEKEFQSADVRLFLVDVSK--KENWKEFINKSRERLEGSILIANKIDIL 318 >gi|94984585|ref|YP_603949.1| tRNA modification GTPase TrmE [Deinococcus geothermalis DSM 11300] gi|205829146|sp|Q1J154|MNME_DEIGD RecName: Full=tRNA modification GTPase mnmE gi|94554866|gb|ABF44780.1| tRNA modification GTPase trmE [Deinococcus geothermalis DSM 11300] Length = 439 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q +R +AL+G NAGKS+L+N +G + SIVT TTR + +S + +D Sbjct: 215 QVATRGARLALIGRPNAGKSSLLNALLGYERSIVTPIPGTTRDYLEAQLSLAGVPVTLVD 274 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 T G+ D +R + + AD+V ++ D + D L R +R++ + Sbjct: 275 TAGLRETGDEVEAAGVRQAVRLAESADLVLVLEDGSQP-----RDHLPAELPRETRMLRV 329 Query: 137 LNKID 141 K D Sbjct: 330 RTKAD 334 >gi|325662531|ref|ZP_08151134.1| hypothetical protein HMPREF0490_01874 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471227|gb|EGC74452.1| hypothetical protein HMPREF0490_01874 [Lachnospiraceae bacterium 4_1_37FAA] Length = 405 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G NAGKS+L+N G ++IV+ K TT +++ + +V +DTPG+ + Sbjct: 14 IGIFGKRNAGKSSLINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVLIDTPGL-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 L ++ ++ + DI LVVD + LL++I K+ ++ NK D Sbjct: 73 HGPLGDLRVQKTYQMLNKTDIAILVVDGTIGMTKEDLALLEQIQKKQIPYVIAFNKCD 130 >gi|302558005|ref|ZP_07310347.1| GTP-binding protein [Streptomyces griseoflavus Tu4000] gi|302475623|gb|EFL38716.1| GTP-binding protein [Streptomyces griseoflavus Tu4000] Length = 589 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 12/183 (6%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ E+ E K + + VA+ G TNAGKS+L+NR GA V + T V Sbjct: 254 EIAEMKTGREIKRQERRRHKVPSVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTV 313 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKV 117 R + DT G + R + + AD++ VVD SH E Sbjct: 314 RRAETPSGRLYTLADTVGFVRHLPHHLVEAFRSTMEEVGDADLILHVVDGSHPVPEEQLA 373 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-TFMVSATKGHGCD 176 + ++++++ I+++NK D P L +L+ +EK + VSA G G Sbjct: 374 AVREVIRDVGATGVPEIVVINKADAADPLTL-------QRLLRVEKRSIAVSARTGRGMA 426 Query: 177 DVL 179 ++L Sbjct: 427 ELL 429 >gi|303229883|ref|ZP_07316659.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-134-V-Col7a] gi|302515439|gb|EFL57405.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-134-V-Col7a] Length = 444 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N V ++SIV TR + + +DT GI Sbjct: 5 LVAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFV 64 Query: 84 KDSYHKL--MIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 ++ H + M+RL I+ AD++ VVD + + V + + I + S + ++L++NK Sbjct: 65 TENSHVIPKMMRLQAELAIEEADVILFVVDGKQGI-VPADEEVANILRTSGKPVVLVVNK 123 Query: 140 IDCVKPE 146 ID V E Sbjct: 124 IDSVNQE 130 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 6/144 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L N +G IV+ TTR + + + + V +DT G+ Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTHWTHGDQKFVLIDTAGMRRKS 240 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + I S ++ +DIV LV+D + + + +I+++NK D Sbjct: 241 KIDEAVERYSIVRSLRSVDRSDIVVLVLDGVDGVTEQDKKIAGYAYEAGKGVIIVVNKWD 300 Query: 142 CVKPE---RLLEQAEIANKLVFIE 162 V+ + L +I ++L F++ Sbjct: 301 LVEKDDKTTLRYTEDIYDELGFLQ 324 >gi|110801866|ref|YP_699237.1| GTP binding protein [Clostridium perfringens SM101] gi|110682367|gb|ABG85737.1| GTP binding protein [Clostridium perfringens SM101] Length = 597 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 37/240 (15%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ------ 55 E+ +I E + + ++ V+LVG TNAGKSTL N S + + + Sbjct: 343 ELKKIKKIRETQRERRSKDKTSQVSLVGYTNAGKSTLRNTLCAESASTLATQAKDKVFEA 402 Query: 56 -----TTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLV 108 T + R I I DT G + H+L+ + + + ++D++C V Sbjct: 403 DMLFATLDTTTRAIKLPDNRDITLTDTVGFVSKLP--HELVEAFKSTLEEVIYSDLLCHV 460 Query: 109 VDSH----RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLE----QAEIANKLVF 160 VD+ +E + + +L E+ S IL+LNKID E+L E + I NK+V Sbjct: 461 VDASSDNAQEEIIAVEKVLGELKALESAKILVLNKIDKADEEKLNELEAKYSSIYNKVVK 520 Query: 161 IEKTFMVSATKGHGCDDVLNYLCSTLPLA----PWV--YSADQISDLPMFHFTAEITREK 214 I SA + D++L + LP ++ Y++ Q+ + H A ++ E+ Sbjct: 521 I------SARERINLDNLLEAISEELPYTLKSKEYIIPYTSQQV--VAYLHRNANVSEEE 572 >gi|28378534|ref|NP_785426.1| GTP-binding protein EngA [Lactobacillus plantarum WCFS1] gi|254556748|ref|YP_003063165.1| GTP-binding protein EngA [Lactobacillus plantarum JDM1] gi|300767479|ref|ZP_07077391.1| ribosome-associated GTPase EngA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180691|ref|YP_003924819.1| GTP-binding protein EngA [Lactobacillus plantarum subsp. plantarum ST-III] gi|37999659|sp|Q88VZ6|DER_LACPL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28271370|emb|CAD64275.1| GTP-binding protein [Lactobacillus plantarum WCFS1] gi|254045675|gb|ACT62468.1| GTP-binding protein EngA [Lactobacillus plantarum JDM1] gi|300495298|gb|EFK30454.1| ribosome-associated GTPase EngA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046182|gb|ADN98725.1| GTP-binding protein EngA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 436 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYANSEWLGQEFSLIDTGGIDIE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + K + + + I AD++ +V S +E + + + +I RS++ ++L +NK+D Sbjct: 65 DAPFIKQITQQAEIAIDEADVIIYLV-SIKEGVTDADEHVAQILYRSNKPVVLGVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE E + + L F + + +S G G D+L+ + P Sbjct: 123 -NPELRSEVYDFYS-LGFGDP-YPISGAHGLGLGDLLDAVIKNFP 164 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 7/143 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDTPGIFNAK 84 +L+G N GKS++VN +G IV+ TTR + ++++ + V +DT GI Sbjct: 178 SLIGRPNVGKSSIVNALLGEDRVIVSDVAGTTRDAIDTKFTDQDGDRFVMVDTAGIRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y + + + I ++D+ V++ ++ + + +I+++NK D Sbjct: 238 KVYENTERYSVMRALKAIDNSDVALFVINGEEGIREQDKRVAGYAHEAGKGIIIVVNKWD 297 Query: 142 CVKPERLLEQ---AEIANKLVFI 161 VK + Q A I ++ V++ Sbjct: 298 LVKKDNHTMQEFEAYIRDQFVYL 320 >gi|328955564|ref|YP_004372897.1| GTP-binding protein HflX [Coriobacterium glomerans PW2] gi|328455888|gb|AEB07082.1| GTP-binding protein HflX [Coriobacterium glomerans PW2] Length = 443 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 14/165 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL G TNAGKSTL+NR G+ + T R DT G + Sbjct: 212 IALAGYTNAGKSTLMNRLTGSDIMSADKLFATLDPTTRAFKLPGGRLCTLTDTVGFI--Q 269 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILILN 138 H L+ + + + + +DI+ VVD+ E + + +L EI R + +LN Sbjct: 270 KLPHGLVDAFKSTLAEARDSDIILEVVDASDENYLRQMSAVDVVLDEIGASEQRRVTVLN 329 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 KID + P L++A++ + E +VS+ G G + +L L Sbjct: 330 KIDLIDP---LDRADLERRHPDAE---LVSSVNGLGIERLLERLS 368 >gi|310825624|ref|YP_003957982.1| tRNA modification GTPase mnme [Stigmatella aurantiaca DW4/3-1] gi|309398696|gb|ADO76155.1| tRNA modification GTPase MnmE [Stigmatella aurantiaca DW4/3-1] Length = 427 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 42/89 (47%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R VAL G NAGKSTL NR VG ++V + TTR ++ V + LDT G+ Sbjct: 198 RGARVALYGPVNAGKSTLFNRLVGEARALVDAEPGTTRDVLEARVEWNGLALSLLDTAGL 257 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVV 109 L I + T+ D+ LV+ Sbjct: 258 RETPGRLEALGIARTRQTLASVDLALLVL 286 >gi|292806624|gb|ADE42442.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K + I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KGALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISTLIDAILSALNL 168 >gi|291457546|ref|ZP_06596936.1| GTP-binding protein HflX [Bifidobacterium breve DSM 20213] gi|291380599|gb|EFE88117.1| GTP-binding protein HflX [Bifidobacterium breve DSM 20213] Length = 508 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 17/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L NR G+ + T + VR + ++DT G Sbjct: 289 TVAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRAKTHDGRAFAYVDTVGFVRR 348 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSS-RLILILN 138 + + + + AD++ VVD SH + I +D+L +I S IL+ N Sbjct: 349 LPTQLVEAFKSTLEEVGEADVIVHVVDGSHPDPFSQIDAVNDVLADIEGTVSIPRILVFN 408 Query: 139 K---IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 K ID K ERL F+VSA G G D + + + LP+ Sbjct: 409 KADQIDDAKRERL---------AALQPDAFIVSAYSGKGLDALRDAVEELLPV 452 >gi|121607078|ref|YP_994885.1| GTP-binding protein, HSR1-like [Verminephrobacter eiseniae EF01-2] gi|121551718|gb|ABM55867.1| GTP-binding protein, HSR1-related [Verminephrobacter eiseniae EF01-2] Length = 387 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 16/177 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL-DTPGIFNA 83 ++LVG TNAGKSTL N V A T + R + + V L DT G Sbjct: 200 ISLVGYTNAGKSTLFNALVKAGAYAADQLFATLDTTTRQLYLANAGRSVSLSDTVGFI-- 257 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILIL 137 +D H L+ + AD++ VVD+ E + +L EI +L+ Sbjct: 258 RDLPHGLIDAFEATLQEAVDADLLLHVVDASNPDFPEQMAQVERVLHEIGAADIAQMLVF 317 Query: 138 NKIDCV----KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 NK+D + +P RL +Q E A + +E+ F VSA G G D + L + + P Sbjct: 318 NKLDALPAQRRPLRLQDQYERAGQ--GLERWF-VSARSGEGLDLLRQALAAKVLATP 371 >gi|55980900|ref|YP_144197.1| tRNA modification GTPase TrmE [Thermus thermophilus HB8] gi|81821865|sp|Q5SJS7|MNME_THET8 RecName: Full=tRNA modification GTPase mnmE gi|55772313|dbj|BAD70754.1| thiophene and furan oxidation protein [Thermus thermophilus HB8] Length = 432 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 Q +R +AL+GA NAGKS+L+N +G + ++V+ TTR + + +V Sbjct: 213 LAQKGAR---LALIGAPNAGKSSLLNALLGYERALVSPIPGTTRDYLEAPLELFGIPLVA 269 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 +DT G+ +D ++ + + + AD+V VVD Sbjct: 270 VDTAGVRETEDPVERMGVERALGIAEEADLVLYVVD 305 >gi|323465554|gb|ADX77707.1| tRNA modification GTPase TrmE [Staphylococcus pseudintermedius ED99] Length = 460 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 220 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S + AD++ V++ + L + L + I + I+I+NK Sbjct: 280 IRETEDIVERIGVERSRKALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDA--IVIINK 337 Query: 140 IDCVKPERLLEQAEI 154 D E+ L+ AE+ Sbjct: 338 TDL---EQRLDLAEV 349 >gi|189502515|ref|YP_001958232.1| GTP-binding protein EngA [Candidatus Amoebophilus asiaticus 5a2] gi|238692314|sp|B3ETF1|DER_AMOA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189497956|gb|ACE06503.1| hypothetical protein Aasi_1169 [Candidatus Amoebophilus asiaticus 5a2] Length = 433 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 28/191 (14%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 + VA+VG N GKSTL NR V + +I+ + TTR G + +DT G + Sbjct: 2 ANIVAIVGRPNVGKSTLFNRLVEERKAIMASESGTTRDRHYGYATWNGKNFTVVDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILI 136 + D + K + + I+ A +V +VD +V I + KE+A ++L+ Sbjct: 62 QGSSDIFEKSICEQAKIAIEEASVVLFMVDC----QVGITAMDKEVAHILRAADKPVLLV 117 Query: 137 LNKIDCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 NK D V + A +A++ + + + +SA G G D+L+ + VY Sbjct: 118 ANKADNV------DTALMAHEFHALGLGNPYPISAASGTGTGDLLDQVT--------VYC 163 Query: 195 ADQI---SDLP 202 D I +D+P Sbjct: 164 QDTIEQETDIP 174 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D ++ + +A++G N GKS+L+N +G + SIVT TTR + + Sbjct: 164 QDTIEQETDIPKIAILGRPNVGKSSLLNALLGEERSIVTPIAGTTRDAIDTTYNLYGKNF 223 Query: 73 VFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 + DT GI K+ + ++ AD+ +++D+ L+ +L+ K Sbjct: 224 ILTDTAGIRKKSKVKEDIEFYSTLRALKALQDADVCIIMIDATLGLEGQDVNLISLAYKY 283 Query: 130 SSRLILILNKIDCVK 144 ++L++NK D +K Sbjct: 284 KKGILLLVNKWDLIK 298 >gi|21242765|ref|NP_642347.1| GTP-binding protein EngA [Xanthomonas axonopodis pv. citri str. 306] gi|325927625|ref|ZP_08188854.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas perforans 91-118] gi|26006715|sp|Q8PKY6|DER_XANAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21108245|gb|AAM36883.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306] gi|325541992|gb|EGD13505.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas perforans 91-118] Length = 465 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ E Q + +DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 ++ R + + AD+V VVD RE ++ D +L + K + +L++NKID Sbjct: 65 EEGLAGATARQARAAAGEADLVLFVVDG-REGASSLDDEILAWLRKLARPTVLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E A +SA G D++L+ + + LP Sbjct: 124 TDEETV--RSEFAR--YGFSDVVALSAAHRQGIDELLDEVGARLP 164 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDGRQYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + QAE ++ KL F+ + +SA G G ++ + A +S + Sbjct: 301 G-QSDYQRAQAEDLLSRKLGFVNWAEAVRISALHGSGMRELFQAIHRAHASATHEFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|317490504|ref|ZP_07948984.1| GTP-binding protein HflX [Eggerthella sp. 1_3_56FAA] gi|316910397|gb|EFV32026.1| GTP-binding protein HflX [Eggerthella sp. 1_3_56FAA] Length = 436 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 77/176 (43%), Gaps = 14/176 (7%) Query: 16 VQDNSR--SGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 VQ SR SG VAL G TNAGKS+L+NR A V T S R + + Sbjct: 206 VQRESRYESGMFKVALAGYTNAGKSSLLNRLTNADVLAYDKLFATLDSTTRKFELPEGRE 265 Query: 72 IVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIA 127 I DT G + + + I AD+V VVD S E + I D+L +I Sbjct: 266 ITVTDTVGFIQKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIH 325 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + +L+ NK D + ERL A K + F VSA G G +++ ++ Sbjct: 326 AQDLSRVLVFNKCDLLGEERL-----GALKARHPQAQF-VSAAMGEGVGELVEHVA 375 >gi|209883526|ref|YP_002287383.1| tRNA modification GTPase TrmE [Oligotropha carboxidovorans OM5] gi|209871722|gb|ACI91518.1| tRNA modification GTPase TrmE [Oligotropha carboxidovorans OM5] Length = 442 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 17/160 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKSTL+NR + +IV+ TTR I+ + + +DT G+ +A Sbjct: 221 VAIAGPPNAGKSTLLNRLARREAAIVSPHAGTTRDIIEVHLDLDGYPVTLIDTAGLRDAS 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D + +R + + + AD+V L +D E + N L E+ L + NKID Sbjct: 281 DPVEQEGVRRARARAEAADLV-LWLD---EAESNATPLAGEVP-----LWRVRNKIDLA- 330 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 ++ + F +SA G G D ++ L Sbjct: 331 -------GKVGASTGGSDPAFAISAVTGEGVDQLVAALVG 363 >gi|192288590|ref|YP_001989195.1| GTPase ObgE [Rhodopseudomonas palustris TIE-1] gi|261277737|sp|B3Q731|OBG_RHOPT RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|192282339|gb|ACE98719.1| GTP-binding protein Obg/CgtA [Rhodopseudomonas palustris TIE-1] Length = 353 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 LVG NAGKST +++ AK I + T + G+V+ + V D PG+ Sbjct: 162 AGLVGLPNAGKSTFLSKVSAAKPKIADYPFTTLHPQL-GVVNSDGREFVLADIPGLIEGA 220 Query: 85 DSYHKL-------------MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 L ++ L +T +HA V EL+ L+ +I Sbjct: 221 HEGAGLGDRFLGHIERCRVLLHLIDATCEHAGKAYKTVRG--ELEAYAETLVDKIE---- 274 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKT-FMVSATKGHGCDDVLNYLCSTLPLAP 190 I+ LNKID V+P+ L +Q + + +KT ++S G G +VL L + + AP Sbjct: 275 --IVALNKIDAVEPDELKKQKDRLKRAA--KKTPLLLSGVTGQGVPEVLRALVAVIGEAP 330 Query: 191 WVYSADQISDLP 202 A +D P Sbjct: 331 VSDKAIGTADNP 342 >gi|285017959|ref|YP_003375670.1| GTP-binding protein hflx [Xanthomonas albilineans GPE PC73] gi|283473177|emb|CBA15683.1| probable gtp-binding protein hflx [Xanthomonas albilineans] Length = 441 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 9/170 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG TNAGKSTL N GA+ T VR I + DT G + Sbjct: 201 IAVVGYTNAGKSTLFNALTGAEAYAADQLFATLDPTVRRIALPG-GNAMLADTVGFV--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILILN 138 D H+L+ R + S + AD + VVD+ L+ + ++L + +L+ N Sbjct: 258 DLPHELVAAFRSTLSEAREADFLLHVVDAADPLREERIAQVDEVLHAVGAGELPQLLVFN 317 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID ++ + A+ + +SA G G D + L L L Sbjct: 318 KIDRIEGAQARHDAQDGAPDAARRERVWISARDGRGQDLLQQVLGQRLGL 367 >gi|302382897|ref|YP_003818720.1| GTP-binding proten HflX [Brevundimonas subvibrioides ATCC 15264] gi|302193525|gb|ADL01097.1| GTP-binding proten HflX [Brevundimonas subvibrioides ATCC 15264] Length = 443 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR G++V T + R I + + DT G + Sbjct: 219 AVALVGYTNAGKSTLFNRLTGSEVLAKDLLFATLDTTQRTIRLPQGRPAIIADTVGFIS- 277 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLV-----VDSHRELKVNIHDLLKEIAK---RSSRL 133 D H+L+ R + + AD++ V D+ + K ++ D+LK+I + + R+ Sbjct: 278 -DLPHELVESFRATLEEVGEADLILHVRDIASADTAAQAK-DVEDVLKQIEQPEGKPRRI 335 Query: 134 ILILNKIDCVKPE 146 + + NK D + PE Sbjct: 336 LEVWNKTDLLDPE 348 >gi|317452831|emb|CBL87851.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +++ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFRKVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|303232074|ref|ZP_07318777.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-049-V-Sch6] gi|302513180|gb|EFL55219.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-049-V-Sch6] Length = 444 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N V ++SIV TR + + +DT GI Sbjct: 5 LVAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFV 64 Query: 84 KDSYHKL--MIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 ++ H + M+RL I+ AD++ VVD + + V + + I + S + ++L++NK Sbjct: 65 TENSHVIPKMMRLQAELAIEEADVILFVVDGKQGI-VPADEEVANILRTSGKPVVLVVNK 123 Query: 140 IDCVKPE 146 ID V E Sbjct: 124 IDSVNQE 130 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 6/144 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L N +G IV+ TTR + + + + V +DT G+ Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTHWTHGDQKFVLIDTAGMRRKS 240 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ + I S ++ +DIV LV+D + + + +I+++NK D Sbjct: 241 KIDEAVERYSIVRSLRSVDRSDIVVLVLDGVDGVTEQDKKIAGYAYEAGKGVIIVVNKWD 300 Query: 142 CVKPE---RLLEQAEIANKLVFIE 162 V+ + L +I ++L F++ Sbjct: 301 LVEKDDKTTLRYTEDIYDELGFLQ 324 >gi|154173921|ref|YP_001408433.1| tRNA modification GTPase TrmE [Campylobacter curvus 525.92] gi|205829128|sp|A7GYZ1|MNME_CAMC5 RecName: Full=tRNA modification GTPase mnmE gi|112802942|gb|EAU00286.1| tRNA modification GTPase TrmE [Campylobacter curvus 525.92] Length = 444 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+++N + + +I++ + TTR + + +DT GI Sbjct: 221 VAIVGKPNVGKSSILNSLLSYERAIISDEAGTTRDRIEENFKVGTHLVRIIDTAGIRKNA 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ IR S + I+ ADIV V DS +++ + ++ ILNK D Sbjct: 281 GKIEKIGIRYSLAAIEEADIVLAVFDSSSASDEQDERIVELVKNSGKKVFFILNKSD 337 >gi|162606364|ref|XP_001713212.1| hypothetical protein GTHECHR2139 [Guillardia theta] gi|12580678|emb|CAC26996.1| hypothetical protein [Guillardia theta] Length = 496 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 13/184 (7%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKV--SIVTHKVQTTRSIVRGIVS 66 FN++K R + +VG +N GKSTL+NR + SIV T+ I++ Sbjct: 49 FNDYKQM-----RIPIITVVGRSNVGKSTLINRITKSNKDGSIVHDSEGVTKDIIQRKAF 103 Query: 67 EKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 K + + DT G +N K+ +K M + +S+I+ + ++ V+D ++ + +L Sbjct: 104 WKNYEFLMTDTGGFSINYNKKNEIYKNMTKQIFSSIEKSSLIIFVLDFFSQITQDEIELA 163 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + + + +IL++NK C E ++I L F E +SA G ++L + Sbjct: 164 EYLKFQEIPVILVVNK--CENINIFNENSKIFWSLGFGE-PIPISAIHGINTGELLEKIV 220 Query: 184 STLP 187 S LP Sbjct: 221 SYLP 224 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 19/176 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV--FLDTPGIFN 82 V+++G N GKST VN+ +G SIV+ TT V +S ++ V F+DT GI Sbjct: 237 VSIIGKPNVGKSTFVNKLLGQYRSIVSDTPGTTSDSVDSYISGGKNCNVYNFIDTAGIKR 296 Query: 83 AKD---SYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILI 136 K M+ + +++ ++ V ++D + + V I D+ I K + +++ Sbjct: 297 KKSIEFGIEYFMVNRTLKSVQKSECVLFMIDINNGITDQDVKISDI---IVKENKCCVIL 353 Query: 137 LNKIDCVKPERLLEQAEI------ANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 LNK D +K +++ +Q I +KL + E F SA G C V + + S L Sbjct: 354 LNKWDKIK-KKMSKQTLIDLCKTSLSKLSWAEIIF-TSALNGENCKSVFDLIDSAL 407 >gi|318042392|ref|ZP_07974348.1| GTP-binding protein Der [Synechococcus sp. CB0101] Length = 454 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKSTLVNR ++ +IV + TR ++ +DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCKSREAIVHDEPGVTRDRTYQDGYWRDRHFKVVDTGGLVFDD 65 Query: 85 DSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 DS IR + + A + ++ D + L + + + + ++L +NK C Sbjct: 66 DSEFLPEIREQANLALSEASVAVVIADGQQGLTAADESIAEWLRGHNVPVLLAVNK--CE 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE L A L E + +SA G G D+L+ L LP Sbjct: 124 SPEAGLSMAAEFWSLGLGE-PYPISAIHGAGTGDLLDKLVDHLP 166 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 10/158 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-FLDTPGIFNA 83 +A++G N GKS+L+N G K +IV+ ++ T E+E LDT GI Sbjct: 179 LAIIGRPNVGKSSLLNAICGEKRAIVS-PIRGTTRDTIDTTIEREGHTWKILDTAGIRRK 237 Query: 84 KDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + I S+ I+ +D+ LV+D + L I + ++++NK Sbjct: 238 RSVNYGPEFFGINRSFKAIERSDVCVLVIDVLDGVTEQDQRLAGRIEEDGRACVVVVNKW 297 Query: 141 DCVKPERLLEQA---EIANKLVFIEKTFMV--SATKGH 173 D ++ + A E+ KL F++ M+ SA G Sbjct: 298 DAIEKDSHTMPAMEKELRAKLYFLDWAPMLFTSALSGQ 335 >gi|114705491|ref|ZP_01438394.1| tRNA modification GTPase [Fulvimarina pelagi HTCC2506] gi|114538337|gb|EAU41458.1| tRNA modification GTPase [Fulvimarina pelagi HTCC2506] Length = 474 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG VA+VGA NAGKS+L+N + +IVT TTR ++ + +V LDT G Sbjct: 214 RSGYKVAIVGAPNAGKSSLLNALAEREAAIVTDVPGTTRDVISVTLDLSGVPVVLLDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 I KD + + + + + A++V + D Sbjct: 274 IRETKDKVEAIGVGRTRAAMNEANLVLALED 304 >gi|52082648|ref|YP_081439.1| tRNA modification GTPase TrmE [Bacillus licheniformis ATCC 14580] gi|52788047|ref|YP_093876.1| tRNA modification GTPase TrmE [Bacillus licheniformis ATCC 14580] gi|319648514|ref|ZP_08002730.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2] gi|81384063|sp|Q65CN1|MNME_BACLD RecName: Full=tRNA modification GTPase mnmE gi|52005859|gb|AAU25801.1| ThdF protein - tRNA modification [Bacillus licheniformis ATCC 14580] gi|52350549|gb|AAU43183.1| ThdF [Bacillus licheniformis ATCC 14580] gi|317389593|gb|EFV70404.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2] Length = 459 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR ++ V+ + + +DT G Sbjct: 219 REGISTVIIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ L L + A + +I+I+NK Sbjct: 279 IRETEDIVERIGVERSRQVLKEADLILLVLNYSESLSDEDIKLFE--ATKGMDIIVIVNK 336 Query: 140 ID 141 D Sbjct: 337 TD 338 >gi|24212880|ref|NP_710361.1| tRNA modification GTPase [Leptospira interrogans serovar Lai str. 56601] gi|26454677|sp|P97043|MNME_LEPIN RecName: Full=tRNA modification GTPase mnmE gi|24193543|gb|AAN47379.1| tRNA modification GTPase [Leptospira interrogans serovar Lai str. 56601] Length = 456 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G N GKS+L+N +G + SI++ TTR + + + + +DT G+ Sbjct: 223 IVLYGEPNTGKSSLMNVLLGKERSIISEIPGTTRDYISEEILLEGIPVRLVDTAGVRETT 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D KL I S + ADI +VD + K N + + + +R ILI NKID + Sbjct: 283 DHIEKLGIERSEKEFQSADIRLFLVDVSK--KENWKEFINKSRERLEGSILIANKIDIL 339 >gi|332796801|ref|YP_004458301.1| GTP binding protein [Acidianus hospitalis W1] gi|332694536|gb|AEE94003.1| GTP binding protein [Acidianus hospitalis W1] Length = 329 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V + G+ N GKSTLV++ AK I + TT+ I G ++ +DTPGI + Sbjct: 160 TVIIAGSPNVGKSTLVSKISSAKPEIANYPF-TTKEIHVGHFDINGIKVQVIDTPGILDR 218 Query: 84 KDSYHKLMIRLSWSTIKHAD--IVCLVVDSHREL--KVNIHDLLKEIAKRSSRLILILNK 139 + R + + IK+ + IV L S + L DLL+EI + + I+ LNK Sbjct: 219 PMKERNQIERKAINAIKNLNGIIVFLFDISQQSLYSPKEQFDLLREILEFNKNAIIALNK 278 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDV 178 ID K E+L AE++ L FM +SA G DD+ Sbjct: 279 IDS-KDEKLY--AEVSKMLRENSLNFMEISAENNIGIDDL 315 >gi|317011055|gb|ADU84802.1| GTP-binding protein EngA [Helicobacter pylori SouthAfrica7] Length = 460 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 8 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 65 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD++ I+ + + +D++ VVD S ++K L +E+ K + L++ Sbjct: 66 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKLIPSDEDIK-----LFREVFKINPNCFLVI 120 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 121 NKIDNDKEKERTYAFSSFG-----MPKSFNISVSHNRGISVLIDAILHALGL 167 Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKS+L+N + SIV+ TT + + + +I F+DT GI + Sbjct: 201 VGIIGRVNVGKSSLLNALTKKERSIVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRG 260 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILILNKID 141 K + + ++ + I LV+D V + + + +A K S +ILILNK D Sbjct: 261 KILGIEKYALERTQKALEKSHIALLVLDVSAPF-VELDEKISSLADKHSLGIILILNKWD 319 >gi|309809326|ref|ZP_07703195.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 2503V10-D] gi|308170439|gb|EFO72463.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 2503V10-D] Length = 435 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV + TR + Q V +DT GI Sbjct: 5 VVALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ ++ D + N+ + + +I ++ + +IL +NK D Sbjct: 65 DNVIEEQIKTQAEIAINEADVIVMLSDVTGHV-TNLDETIAKILYKAKKPIILAINKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + S Sbjct: 123 -NPEQRNDIYDFYS--LGLGDPIPVSGSHGTGLGDLLDAIVS 161 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +++G N GKS++VN +G IV TTR + I + + +DT GI Sbjct: 178 SIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGIRRKGK 237 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDS 111 Y K+ + S S I+ +D+ +V+D+ Sbjct: 238 VYEKVEKYSVMRSISAIEQSDVAIIVIDA 266 >gi|303230675|ref|ZP_07317425.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-049-V-Sch6] gi|302514730|gb|EFL56722.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-049-V-Sch6] Length = 461 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG NAGKS+L+N + +IVT TTR + ++ + + +DT G Sbjct: 221 RDGITTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D+ L + + I ADIV V+D L ++L ++ ++ I++LNK Sbjct: 281 IRDTQDTVEALGVERARDYINKADIVLCVIDGSTPLTPEEIEILTSVSGLNT--IVLLNK 338 Query: 140 IDCVK 144 D + Sbjct: 339 SDVAQ 343 >gi|294625013|ref|ZP_06703663.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666614|ref|ZP_06731853.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600688|gb|EFF44775.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603634|gb|EFF47046.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 465 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ E Q + +DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 ++ R + + AD+V VVD RE ++ D +L + K + +L++NKID Sbjct: 65 EEGLAGATARQARAAAGEADLVLFVVDG-REGASSLDDEILAWLRKLARPTVLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E A +SA G D++L+ + + LP Sbjct: 124 TDEETV--RSEFAR--YGFSDVVALSAAHRQGIDELLDEVGARLP 164 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDGRQYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + QAE ++ KL F+ + +SA G G ++ + + A +S + Sbjct: 301 G-QSDYQRAQAEDLLSRKLGFVNWAEAVRISALHGSGMRELFHAIHRAHASATHEFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|269926513|ref|YP_003323136.1| GTP-binding proten HflX [Thermobaculum terrenum ATCC BAA-798] gi|269790173|gb|ACZ42314.1| GTP-binding proten HflX [Thermobaculum terrenum ATCC BAA-798] Length = 441 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/249 (22%), Positives = 105/249 (42%), Gaps = 25/249 (10%) Query: 5 EITFFNEHKDFVQDNSRS---GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI +H+ ++++ ++ V+LVG TNAGKSTL+N+ GA V T Sbjct: 192 EIEQVRKHRKILREHRKAEGLPVVSLVGYTNAGKSTLLNKLAGADVLAEDKLFATLDPTT 251 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKV 117 R + ++ DT G + R + I AD++ VVD + E Sbjct: 252 RQVRLPAGMLSLWTDTVGFIQKLPTDLVAAFRATLEEILEADVLVHVVDITHENAEEQAA 311 Query: 118 NIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 +++ L+ + ++ LNK+D + P+ + + + + ++SA G G D Sbjct: 312 TVNETLRSLGAADKPTVVALNKVDKLAPDL---DSGLPSLEDLPDNYVLISAELGWGIDT 368 Query: 178 VLNYLCSTLP--------LAPWVYSADQISDLPMFHFTAEITREKLF---LHLHKEIPYS 226 +L+ + L L P YS + DL FH ++ E+ H+ ++P Sbjct: 369 LLSKVEQVLESNLRELDVLLP--YSEGALVDL--FHKYGQVRTEEFTHAGTHIRGKLPEK 424 Query: 227 SCVVTEKWE 235 + ++E Sbjct: 425 YVSLMRRYE 433 >gi|255533659|ref|YP_003094031.1| small GTP-binding protein [Pedobacter heparinus DSM 2366] gi|255346643|gb|ACU05969.1| small GTP-binding protein [Pedobacter heparinus DSM 2366] Length = 433 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 13/164 (7%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S +A+VG N GKSTL NR ++ +IV TR G+ + Q +DT G + Sbjct: 2 SNIIAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYGVAEWTDKQFTVIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---KRSSR-LILI 136 N++D + + I+ A ++ +VD + I DL EIA +RS + + ++ Sbjct: 62 ANSEDVFEAAIREQVIIAIEEATVLLFMVD----VTTGITDLDDEIAQLLRRSKKPVFIV 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +NK+D + L A + E +S+ G G D+L+ Sbjct: 118 VNKVDNTQ---LQNDAAVFYGFGLGE-IHPISSMTGSGTGDLLD 157 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 + +VG N GKS+L+N +G + +IVT TTR + ++ + +F+DT G+ Sbjct: 176 ITIVGRPNVGKSSLINALMGKERNIVTPIAGTTRDSIHIHYNQFGHEFMFIDTAGLRKKT 235 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K++ + + ++ AD+V L++D+ L+ ++ K +++++NK D Sbjct: 236 KVKENIEFYSVMRTIKALEEADVVILMIDAMEGLESQDVNIFHLAEKNKKGIVILVNKWD 295 Query: 142 CVK 144 V+ Sbjct: 296 LVE 298 >gi|145300253|ref|YP_001143094.1| GTP-binding protein HflX [Aeromonas salmonicida subsp. salmonicida A449] gi|142853025|gb|ABO91346.1| GTP-binding protein HflX [Aeromonas salmonicida subsp. salmonicida A449] Length = 428 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 26/176 (14%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N+ A V T +R +V ++ DT G Sbjct: 199 TVSLVGYTNAGKSTLFNQLTAASVYAADQLFATLDPTLRKLVIRDVGDVILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSSRLILIL 137 + H L+ + + + AD++ VVD + +++ NI +L EI ++I Sbjct: 257 RHLPHDLVAAFKATLQETREADLLLHVVDCADEQMQENIDSVQQVLAEIEADDRPQLMIC 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKT-------FMVSATKGHGCDDVLNYLCSTL 186 NKID ++AN+ +E+ +SA G GC+ + L L Sbjct: 317 NKID-----------KLANRPAGLERDDEGRPVRLWLSAQSGEGCEYLFTALTELL 361 >gi|99905877|gb|ABF68633.1| YphC [Helicobacter pylori] Length = 170 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+ +S + G +++ + S L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSSNISVSHNRGISALIDAILSALNL 168 >gi|66818499|ref|XP_642909.1| hypothetical protein DDB_G0276985 [Dictyostelium discoideum AX4] gi|60471024|gb|EAL68994.1| hypothetical protein DDB_G0276985 [Dictyostelium discoideum AX4] Length = 743 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 32/174 (18%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA +G +N GKS+L+N ++ + K T+SI E S + +D PG A Sbjct: 278 VAFIGRSNVGKSSLINALTQRGLAKTSDKPGQTQSIN---WFELGSTLYLVDLPGYGFA- 333 Query: 85 DSYHKLMIRLSWSTI--------KHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + K + WS I K V +++DS LK + +LL E+ K+ + +I Sbjct: 334 --FAKETLVEQWSDITIHYLTERKCISCVFILIDSRHGLKDSDRNLLLELDKKKIKTHII 391 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 L K D KPE L+++ I N+ + NY ST P+ P Sbjct: 392 LTKADLTKPEDLVKRISITNQEI------------------QTNYRYSTTPVLP 427 >gi|122702173|emb|CAL88277.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--T 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G + +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGINALIDAILRALNL 168 >gi|157804058|ref|YP_001492607.1| GTP-binding protein EngA [Rickettsia canadensis str. McKiel] gi|166225851|sp|A8EZN9|DER_RICCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157785321|gb|ABV73822.1| GTP-binding protein EngA [Rickettsia canadensis str. McKiel] Length = 447 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH--KVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 +ALVG N GKSTL NR K +IV + V R G + E + +DTPG+ Sbjct: 6 IALVGRPNVGKSTLFNRLSIRKKAIVHNLPGVTRDRKYTDGKIGSCE--FLLIDTPGLEE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +S ++ + I AD++C +VD + + L I K + IL++NK C Sbjct: 64 NPNSMSVRLMEQTTKAILEADLICFMVDCRSGILPDDKLLSSFIRKYNKPAILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E+ + + +L F + +SA G G D+ + + + LP Sbjct: 122 ---EKAFDFDKEYYQLGF-DSMVAISAEHGTGLIDLYDEIIAKLP 162 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D + CV +V G NAGKST +N + + + + TR + K + I Sbjct: 171 IADPVKGDCVQIVISGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIK 230 Query: 74 FLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ +S KL + ++IK A+ V L++D+ LK ++ +A Sbjct: 231 LIDTAGLRKKSTITESLDKLSASDAINSIKFANTVILIIDALSPLKQQDLNIASYVANEG 290 Query: 131 SRLILILNKIDCVK 144 +++++NK D VK Sbjct: 291 RSIVIVVNKWDLVK 304 >gi|59800867|ref|YP_207579.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA 1090] gi|8134430|sp|O87407|DER_NEIG1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3722226|gb|AAC63508.1| essential Gc protein [Neisseria gonorrhoeae] gi|59717762|gb|AAW89167.1| putative GTP-binding protein [Neisseria gonorrhoeae FA 1090] Length = 485 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 8/168 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G K I TTR + I E+E + +DT Sbjct: 172 DAKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 230 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 231 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 290 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + +NK D + ER + + +I+ KL F++ K +SA K G D + Sbjct: 291 VAVNKWDGISEERREQVKRDISRKLYFLDFAKFHFISALKERGIDGLF 338 Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL NR K ++V TR G +DT G Sbjct: 4 TIALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD L Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGL 96 >gi|116622266|ref|YP_824422.1| GTPase ObgE [Candidatus Solibacter usitatus Ellin6076] gi|122254210|sp|Q022G3|OBG_SOLUE RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|116225428|gb|ABJ84137.1| small GTP-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 337 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 18/178 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG NAGKSTL++R AK I + T + + E V D PGI Sbjct: 161 VGLVGFPNAGKSTLISRISAAKPKIAAYPFTTLEPNLGVVQMEGFRSFVVADIPGIIEGA 220 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRL-----IL 135 H L I+ I+ ++ +VD S R+ + +++E+A+ S +L I+ Sbjct: 221 HEGHGLGIQF-LRHIERTRLLAHLVDVSEESGRDPVQDFEIIMQELARFSDQLVAKPMIV 279 Query: 136 ILNKIDCVK-PERLLEQAEIANK--LVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + K+D + P R+ ++A L F E +S+ G G D L + + LAP Sbjct: 280 VATKMDVAQDPARVEALRDLAKSRDLPFFE----ISSATGQGI-DALKHAMADRVLAP 332 >gi|306836304|ref|ZP_07469285.1| GTP-binding protein HflX [Corynebacterium accolens ATCC 49726] gi|304567824|gb|EFM43408.1| GTP-binding protein HflX [Corynebacterium accolens ATCC 49726] Length = 502 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 12/162 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G TNAGKS+L+N A V + T R Q+VF DT G Sbjct: 276 IAIAGYTNAGKSSLINAMTNAGVLVEDALFATLDPTTRRASLADGRQVVFTDTVGFVRHL 335 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLILI 136 + + + + ADI+ VVD + I+D++ E +++ I++ Sbjct: 336 PTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNKVIYDIVSETGEQAPPEIIV 395 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +NKID P L E + + E VSA G G D++ Sbjct: 396 INKIDQADPLVLAELRHVLDH----EDVVYVSARTGEGIDEL 433 >gi|302380361|ref|ZP_07268831.1| ribosome-associated GTPase EngA [Finegoldia magna ACS-171-V-Col3] gi|303233791|ref|ZP_07320445.1| ribosome-associated GTPase EngA [Finegoldia magna BVS033A4] gi|302311851|gb|EFK93862.1| ribosome-associated GTPase EngA [Finegoldia magna ACS-171-V-Col3] gi|302495225|gb|EFL54977.1| ribosome-associated GTPase EngA [Finegoldia magna BVS033A4] Length = 438 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G N GKS+L+N + + IVT TTR + ++ K ++ VF+DT G+ K Sbjct: 179 VCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYVFIDTAGLRKRK 238 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + S I +DI L++D+ + +L + +I+++NK D Sbjct: 239 KIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSEQDTKILGYAHDQGKAMIILVNKWD 298 Query: 142 CVKPE 146 V+ + Sbjct: 299 LVEKQ 303 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 15/182 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N+ + +++I TR + + +DT G+ Sbjct: 5 VVAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPK 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNK 139 + + K + + + I+ AD++ +VD + + + + D+L+ K +IL++NK Sbjct: 65 SNEIITKNIKKQTELAIETADVILFMVDGKQGITPIDMEVADMLRRTKK---SVILVVNK 121 Query: 140 IDCVKPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID +K +Q + + L F E F +SA+ G D+L + S S D Sbjct: 122 IDHIK-----QQDNVYDFYNLGFYE-IFPISASNSMGLGDLLEAVVSKFDDNSNTESDDD 175 Query: 198 IS 199 I+ Sbjct: 176 IT 177 >gi|256545124|ref|ZP_05472490.1| ribosome-associated GTPase EngA [Anaerococcus vaginalis ATCC 51170] gi|256399165|gb|EEU12776.1| ribosome-associated GTPase EngA [Anaerococcus vaginalis ATCC 51170] Length = 442 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 13/173 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V LVG TN GKSTL N+ VG + +I TR V V + + DT G+ Sbjct: 9 IVTLVGRTNVGKSTLFNKLVGKRKAITEDVNGVTRDRVYDKVEWIGHEFILADTGGL--- 65 Query: 84 KDSYHKLMIRLSWSTIKHA----DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 S +LM + S ++ A D++ VVD + + +++ EI K + ++I++ NK Sbjct: 66 DISNKELMNQEIKSQVEKALLESDLILFVVDGREGINPHDYEIADEIRKYNKKVIVVANK 125 Query: 140 IDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ID P+ + + + + SA D+L+ + S + + + Sbjct: 126 IDGANIPDHIYDFYQFG-----FDDLISTSAEGSKNLGDLLDKIVSFIDFSKF 173 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 18/171 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS+LVN + + IVT TTR + K++ V +DT G+ Sbjct: 182 IAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDTYWQYKDNNYVLIDTAGLRRKN 241 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 D+ + ++ + ++I ++D+ V + + +IA + +I+ + Sbjct: 242 KVSDNIEYYANQRTFDAVDSSEICLFLIDA----TVGVTEQDTKIAGYAHNQKKAIIIAV 297 Query: 138 NKIDCVKPE----RLLEQAEIANKLVF--IEKTFMVSATKGHGCDDVLNYL 182 NK D V+ E + +E+ EI NKL F +S KG D+LN + Sbjct: 298 NKWDKVEKETNTMKNMEK-EIRNKLSFALYAPIIFISVLKGQRITDLLNLI 347 >gi|261379719|ref|ZP_05984292.1| GTP-binding protein HflX [Neisseria subflava NJ9703] gi|284797392|gb|EFC52739.1| GTP-binding protein HflX [Neisseria subflava NJ9703] Length = 386 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 10/134 (7%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 + R A+VG TNAGKS+L NR A V T + R + E+ ++ DT Sbjct: 212 SGRLKTFAIVGYTNAGKSSLFNRLTKADVLAKDQLFATLDTTARRLFLSHEASVILTDTV 271 Query: 79 GIFNAKDSYHKLMIRLSWS--TIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSS 131 G +D HKL+ S + AD++ VVD+ R++ +++++L+EI Sbjct: 272 GFV--RDLPHKLVSAFSATLEETAMADVLLHVVDASNPDFERQMD-DVNEVLEEIGAHEI 328 Query: 132 RLILILNKIDCVKP 145 +++ NKID + P Sbjct: 329 PQLVVYNKIDLLPP 342 >gi|86134521|ref|ZP_01053103.1| GTP-binding protein EngA [Polaribacter sp. MED152] gi|85821384|gb|EAQ42531.1| GTP-binding protein EngA [Polaribacter sp. MED152] Length = 436 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G +IVT+ TTR + + +DT GI Sbjct: 180 AVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKKSR 239 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + +I+++D++ LV+D+ R + ++ K +++++NK D Sbjct: 240 VKEDLEFYSVMRAVRSIEYSDVIILVIDATRGFEGQDQNIFWLAEKNRKGVVILINKWDL 299 Query: 143 VKPE 146 V+ E Sbjct: 300 VEKE 303 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 6/170 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + +A+VG N GKSTL NR V + +IV TR G + +DT G Sbjct: 2 NSIIAIVGRPNVGKSTLFNRLVQRREAIVDSVSGVTRDRHYGKSDWNGKEFSVIDTGGYA 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D + IR I AD++ VVD + ++ K + K + +NK+ Sbjct: 62 IGSDDIFEEEIRKQVKLAIDEADLIVFVVDVEDGITPMDAEVAKLLRKVKKPIFTAVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 D R + E N + + +S+ G G ++L+ + +P AP Sbjct: 122 DNAM--RDADAVEFYN--LGLGDYHTISSINGSGTGELLDAIAEKIP-AP 166 >gi|262341130|ref|YP_003283985.1| GTP-binding protein EngA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272467|gb|ACY40375.1| GTP-binding protein EngA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 443 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 16/167 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V++VG N GKST NR VG + +IV TR + G + +DT G A Sbjct: 4 TVSIVGRPNVGKSTFFNRLVGRRKAIVHITSGVTRDRIFGNSEWNGVKFSVVDTGGFSFA 63 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLI--LI 136 D K + + IK AD++ +VD +K+ + D +EIAK R S+ I L+ Sbjct: 64 TSENDVLEKEIKNQIFIAIKEADVILFLVD----IKMGVLDTDREIAKILRKSQKITLLV 119 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 +NK+D +L L F E + +SA G G ++L+ L Sbjct: 120 VNKVD----NGILYSDTDFFHLGF-ENCYYISAINGSGTGELLDKLV 161 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 7/121 (5%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 ++VG N GKSTL+N F+ IVTH TTR + + + + +DTPG+ K Sbjct: 185 SVVGRPNVGKSTLINSFLDKNHHIVTHISGTTRDSLDVFYKKWGYECILVDTPGV--RKK 242 Query: 86 SYHKLMIRLSWS-----TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 S + I S TI++ D+ L+VD+ R + ++ + + +I+++NK Sbjct: 243 SKIRENIEFYSSIRTVRTIEYTDVCLLMVDAVRGWEKQDTNIFRLVKTNHKGIIILVNKW 302 Query: 141 D 141 D Sbjct: 303 D 303 >gi|241764501|ref|ZP_04762522.1| GTP-binding proten HflX [Acidovorax delafieldii 2AN] gi|241366085|gb|EER60682.1| GTP-binding proten HflX [Acidovorax delafieldii 2AN] Length = 375 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 16/190 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL N V A+ T + R + + E + DT G Sbjct: 188 ISLVGYTNAGKSTLFNALVKARAYAADQLFATLDTTTRQLYLGEAGRSVSLSDTVGFI-- 245 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKVN-IHDLLKEIAKRSSRLILIL 137 +D H L+ + + AD++ VVD+ H +++ + +L EI + +L+ Sbjct: 246 RDLPHGLVDAFQATLQEAVDADLLLHVVDASNPHFPEQIDQVQRVLHEIGAGAVPQLLVF 305 Query: 138 NKIDCVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 NK+D + PE L + E+ + V ++ F VSA G G D + L + A Sbjct: 306 NKLDAMPPESRPALLQDVYELEGRAV--DRQF-VSARNGEGLDALRQKLARAVLAAQTDM 362 Query: 194 SADQISDLPM 203 + ++ PM Sbjct: 363 TPGAGTEFPM 372 >gi|261337501|ref|ZP_05965385.1| GTP-binding protein [Bifidobacterium gallicum DSM 20093] gi|270277898|gb|EFA23752.1| GTP-binding protein [Bifidobacterium gallicum DSM 20093] Length = 523 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 13/174 (7%) Query: 21 RSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 R+G VA+VG TNAGKS+L NR G+ + T + VR S + ++DT Sbjct: 288 RTGLPTVAVVGYTNAGKSSLTNRLTGSSELVENALFATLDTAVRRAQSADGRRYAYVDTV 347 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSS-RL 133 G + + + + AD++ VVDS + ++D+LK+I Sbjct: 348 GFVRRLPTQLVEAFKSTLEEVGEADLIVHVVDSSHPDPFSQIDAVNDVLKDIDGVGEIPT 407 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + NK D L++ A+ + F+VS+ G G D + + LP Sbjct: 408 LTVFNKAD------LIDNAKRERIASLMPDAFIVSSASGEGIDTLRESVEGLLP 455 >gi|22002507|gb|AAM82659.1| TrmE [Synechococcus elongatus PCC 7942] Length = 482 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 13 KDFVQDNSRSGC-----VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 DF+ SR +A+VG N GKS+L+N + +IVT TTR +V + Sbjct: 229 SDFINCRSRGTVAYGPKIAIVGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDLVESQLIV 288 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 + LDT GI D ++ + S + AD+V L +D+ + + ++ Sbjct: 289 GGIPVQVLDTAGIRETSDQVEQIGVERSRRAAQSADLVLLTIDASAGWSAEDQTIWEAVS 348 Query: 128 KRSSRLILILNKID 141 R ++L++NK D Sbjct: 349 DRP--ILLVINKRD 360 >gi|302191345|ref|ZP_07267599.1| GTP-binding protein EngA [Lactobacillus iners AB-1] gi|309804160|ref|ZP_07698238.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 11V1-d] gi|312872309|ref|ZP_07732379.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2062A-h1] gi|312873983|ref|ZP_07734019.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2052A-d] gi|325912827|ref|ZP_08175205.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 60-B] gi|329921288|ref|ZP_08277726.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 1401G] gi|308163743|gb|EFO66012.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 11V1-d] gi|311090532|gb|EFQ48940.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2052A-d] gi|311092132|gb|EFQ50506.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2062A-h1] gi|325477820|gb|EGC80954.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 60-B] gi|328934580|gb|EGG31084.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 1401G] Length = 435 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV + TR + Q V +DT GI Sbjct: 5 VVALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ ++ D + N+ + + +I ++ + +IL +NK D Sbjct: 65 DNVIEEQIKTQAEIAINEADVIVMLSDVTGHV-TNLDETIAKILYKAKKPIILAINKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + S Sbjct: 123 -NPEQRNDIYDFYS--LGLGDPIPVSGSHGTGLGDLLDAIVS 161 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +++G N GKS++VN +G IV TTR + I + + +DT GI Sbjct: 178 SIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGIRRKGK 237 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDS 111 Y K+ + S S I+ +D+ +V+D+ Sbjct: 238 VYEKVEKYSVMRSISAIEQSDVAIIVIDA 266 >gi|294670887|ref|ZP_06735743.1| hypothetical protein NEIELOOT_02591 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307374|gb|EFE48617.1| hypothetical protein NEIELOOT_02591 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 491 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 8/171 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 A++G N GKSTLVN +G + I TTR + I E+E + +DT G+ Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDTAGVRRRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++ LV+D+ +++ + + L++ +NK D Sbjct: 238 KVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVIAVNKWD 297 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 + ER + + +IA KL F++ K +SA K G D + + + + A Sbjct: 298 GISEERRNDIKRDIARKLYFLDFAKFHYISALKERGIDGLFDSIQAAYDAA 348 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGRLGSKPYLVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD+ L Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDARTGL 96 >gi|283458421|ref|YP_003363045.1| putative GTPase [Rothia mucilaginosa DY-18] gi|283134460|dbj|BAI65225.1| predicted GTPase [Rothia mucilaginosa DY-18] Length = 528 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 12/186 (6%) Query: 11 EHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 EH F Q + G VALVG N GKS+L+N+ G++ ++V TTR + I+ Sbjct: 238 EHSQFAQPEALGGPRRVALVGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDEIIELG 297 Query: 69 ESQIVFLDTPGIFN----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 F+DT GI AK + +R + ++ +++ +++D + +++ Sbjct: 298 GYPWRFVDTAGIRRRQHMAKGAEFYSSLRTQ-TALERSEVAVVLLDVSEPISEQDVRIVQ 356 Query: 125 EIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 + ++L NK D + +R +LE+ EI L ++ +SA G D ++ Sbjct: 357 TVIDSGRAMVLAFNKWDTLDEDRRYMLER-EIERDLAHVQWAPRVNISAKTGWHKDKLVP 415 Query: 181 YLCSTL 186 L +L Sbjct: 416 ALERSL 421 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 10/180 (5%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F E ++ + D VA+VG N GKST++NR +G + ++V K TR V Sbjct: 67 FEEEEEQLADP----VVAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWL 122 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 +DT G + + + ++ AD+V LVVD+ + + +++ + + Sbjct: 123 GKSFTLVDTGGWESDARGIDAQVAEQAEIAVEQADVVVLVVDARVGVTASDEQIVRMLRR 182 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 +ILI NKID E EI N + + F VS G G D L+ + +P Sbjct: 183 VKKPIILIANKIDDAHLE-----PEIYNLWSLGMGQPFPVSGLHGRGLADALDEILEVMP 237 >gi|225848777|ref|YP_002728941.1| GTP-binding protein HflX [Sulfurihydrogenibium azorense Az-Fu1] gi|225644205|gb|ACN99255.1| GTP-binding protein HflX [Sulfurihydrogenibium azorense Az-Fu1] Length = 369 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 17/174 (9%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFL 75 +DN VALVG TNAGKS+L+NR I T + I + +++ Sbjct: 188 EDNPNILNVALVGYTNAGKSSLLNRLTKRDTYISDQLFATLDTKTSFIHFPDINKRVIIT 247 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRE----LKVNIHDLLKEIAKR 129 DT G +D ++M + + AD++ V+D + K + D+LK++ Sbjct: 248 DTVGF--VEDMPQEIMDAFMTTLKETEEADLILHVIDISDDNWMLKKQTVEDVLKKLKLE 305 Query: 130 SSRLILILNKIDCVKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 +I ++NK+D V P + LE E N T VSATKG D + + L Sbjct: 306 EKPVINVMNKVDKVIPSQEYLEPDESEN-------TITVSATKGWNIDKLFDIL 352 >gi|170694783|ref|ZP_02885934.1| small GTP-binding protein [Burkholderia graminis C4D1M] gi|170140414|gb|EDT08591.1| small GTP-binding protein [Burkholderia graminis C4D1M] Length = 445 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ +DIV +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VK 144 +K Sbjct: 124 MK 125 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 13/181 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R +A+VG N GKSTL+N VG + I TTR + + +DT G Sbjct: 177 ARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAG 236 Query: 80 IFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + ++ K + + +I A++V L++D+ +++ + + ++ L++ Sbjct: 237 LRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDAHIAGFVVEQGRALVVG 296 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLCSTL 186 +NK D + R +A++ KL F++ K +SA + G DD S L Sbjct: 297 VNKWDGLDSHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYAAAMSKL 356 Query: 187 P 187 P Sbjct: 357 P 357 >gi|78047628|ref|YP_363803.1| GTP-binding protein EngA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123743974|sp|Q3BTW0|DER_XANC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78036058|emb|CAJ23749.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 465 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ E Q + +DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 ++ R + + AD+V VVD RE ++ D +L + K + +L++NKID Sbjct: 65 EEGLAGATARQARAAAGEADLVLFVVDG-REGASSLDDEILAWLRKLARPTVLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E A +SA G D++L+ + + LP Sbjct: 124 TDEETV--RSEFAR--YGFSDVVALSAAHRQGIDELLDEVGARLP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDGRQYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + QAE ++ KL F+ + +SA G G ++ + A +S + Sbjct: 301 G-QSDYQRAQAEDLLSRKLGFVNWAEAVRISALHGSGMRELFQAIHRAHASATHEFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|9294105|dbj|BAB01956.1| GTP-binding protein-like [Arabidopsis thaliana] Length = 537 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 38/195 (19%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR VG +IV + TR + G + + V +DT G+ Sbjct: 35 VAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTVS 94 Query: 85 DSYHKLMIRLSWST------------------------------IKHADIVCLVVDSH-- 112 S +M L+ ST + + ++ VVD Sbjct: 95 KSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQAG 154 Query: 113 -RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATK 171 V I D L++ +IL +NK C P + L QA L F +SA Sbjct: 155 PSGADVEIADWLRKYYSHKY-IILAVNK--CESPRKGLMQASEFWSLGFTP--IPISALS 209 Query: 172 GHGCDDVLNYLCSTL 186 G G ++L+ +CS L Sbjct: 210 GTGTGELLDLVCSGL 224 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/170 (21%), Positives = 81/170 (47%), Gaps = 15/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI-- 80 +A++G N GKS+++N V +IV+ TTR + + + + +DT GI Sbjct: 244 AIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRK 303 Query: 81 ----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 ++ + + + ++ I+ +D+V LV+++ + + + I + +++ Sbjct: 304 KSSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVV 363 Query: 137 LNKIDCVKPERLLEQA-----EIANKLVFIEKTFMV--SATKGHGCDDVL 179 +NK D + P + E A ++ KL ++ +V +A GH D+++ Sbjct: 364 VNKWDTI-PNKNQETAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNIV 412 >gi|260061763|ref|YP_003194843.1| GTP-binding protein EngA [Robiginitalea biformata HTCC2501] gi|88785895|gb|EAR17064.1| GTP-binding protein EngA [Robiginitalea biformata HTCC2501] Length = 412 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 5/125 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G + IVT TTR + + + +DT GI Sbjct: 156 AVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRKSK 215 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I+H+D+ ++VD+ R + ++ +A+R+ + I+IL NK D Sbjct: 216 VKEDLEFYSVMRSVRAIEHSDVCLILVDATRGFDGQVQNIF-WLAQRNHKGIVILVNKWD 274 Query: 142 CVKPE 146 V+ E Sbjct: 275 LVEKE 279 >gi|292806496|gb|ADE42378.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + ++++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSNLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRALDL 168 >gi|313679829|ref|YP_004057568.1| tRNA modification GTPase trme [Oceanithermus profundus DSM 14977] gi|313152544|gb|ADR36395.1| tRNA modification GTPase trmE [Oceanithermus profundus DSM 14977] Length = 436 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V++ +R +ALVGA NAGKS+L+N +G + ++V + TTR + + + +V + Sbjct: 216 VREGAR---LALVGAPNAGKSSLLNALLGFERALVHDRPGTTRDYLEAALEIEGVPLVAV 272 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 DT G+ D + + + + AD++ +VD R Sbjct: 273 DTAGLRRTDDPVEAAGVERALAVAREADLILYLVDRSR 310 >gi|309805732|ref|ZP_07699772.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 09V1-c] gi|309807723|ref|ZP_07701658.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 01V1-a] gi|312875513|ref|ZP_07735516.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2053A-b] gi|315653509|ref|ZP_07906430.1| ribosome-associated GTPase EngA [Lactobacillus iners ATCC 55195] gi|308164985|gb|EFO67228.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 09V1-c] gi|308169034|gb|EFO71117.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 01V1-a] gi|311089024|gb|EFQ47465.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2053A-b] gi|315489200|gb|EFU78841.1| ribosome-associated GTPase EngA [Lactobacillus iners ATCC 55195] Length = 435 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV + TR + Q V +DT GI Sbjct: 5 VVALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ ++ D + N+ + + +I ++ + +IL +NK D Sbjct: 65 DNVIEEQIKTQAEIAINEADVIVMLSDVTGHV-TNLDETIAKILYKAKKPIILAINKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + S Sbjct: 123 -NPEQRNDIYDFYS--LGLGDPIPVSGSHGTGLGDLLDAIVS 161 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +++G N GKS++VN +G IV TTR + I + + +DT GI Sbjct: 178 SIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGIRRKGK 237 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDS 111 Y K+ + S S I+ +D+ +V+D+ Sbjct: 238 VYEKVEKYSVMRSISAIEQSDVAIIVIDA 266 >gi|297626487|ref|YP_003688250.1| FeoB, Ferrous iron transport protein B [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922252|emb|CBL56824.1| FeoB, Ferrous iron transport protein B [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 473 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 18/180 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKS+L+NR GA V + T R + DT G Sbjct: 255 SVALVGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRRCRTTDGRVYTLTDTVGFVRH 314 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVN-IHDLLKEIAKRSSRLILILNK 139 + R + AD++ VVD E ++ +H++L++I +++NK Sbjct: 315 LPTDLVAAFRSTLEESVRADLLLHVVDGSDPDPEGQITAVHEVLRDIGAGERPEQIVVNK 374 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP--------LAPW 191 +D + LLE VF VSA G G +++ S LP + PW Sbjct: 375 VDLASSQSLLELRHNHPDAVF------VSAVTGEGLEELRTRTESRLPTPQTSVDVVVPW 428 >gi|194098169|ref|YP_002001217.1| GTP-binding protein EngA [Neisseria gonorrhoeae NCCP11945] gi|239998620|ref|ZP_04718544.1| GTP-binding protein EngA [Neisseria gonorrhoeae 35/02] gi|240013743|ref|ZP_04720656.1| GTP-binding protein EngA [Neisseria gonorrhoeae DGI18] gi|240016181|ref|ZP_04722721.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA6140] gi|240080325|ref|ZP_04724868.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA19] gi|240112536|ref|ZP_04727026.1| GTP-binding protein EngA [Neisseria gonorrhoeae MS11] gi|240115276|ref|ZP_04729338.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID18] gi|240117563|ref|ZP_04731625.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID1] gi|240120813|ref|ZP_04733775.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID24-1] gi|240123118|ref|ZP_04736074.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID332] gi|240125369|ref|ZP_04738255.1| GTP-binding protein EngA [Neisseria gonorrhoeae SK-92-679] gi|240127821|ref|ZP_04740482.1| GTP-binding protein EngA [Neisseria gonorrhoeae SK-93-1035] gi|260440907|ref|ZP_05794723.1| GTP-binding protein EngA [Neisseria gonorrhoeae DGI2] gi|238690187|sp|B4RKD2|DER_NEIG2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193933459|gb|ACF29283.1| essential Gc protein [Neisseria gonorrhoeae NCCP11945] gi|317163893|gb|ADV07434.1| GTP-binding protein EngA [Neisseria gonorrhoeae TCDC-NG08107] Length = 485 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 8/168 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G K I TTR + I E+E + +DT Sbjct: 172 DAKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 230 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 231 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 290 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + +NK D + ER + + +I+ KL F++ K +SA K G D + Sbjct: 291 VAVNKWDGISEERREQVKRDISRKLYFLDFAKFHFISALKERGIDGLF 338 Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL NR K ++V TR G +DT G Sbjct: 4 TIALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD L Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGL 96 >gi|160331570|ref|XP_001712492.1| engA [Hemiselmis andersenii] gi|159765940|gb|ABW98167.1| engA [Hemiselmis andersenii] Length = 519 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 25/180 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 VA++G N GKS+++N K +IV+ TTR +S + ++ +DT GI Sbjct: 257 VAIIGKPNVGKSSILNFLTNKKRAIVSDIPGTTRDSCDSFISGGSNSNIYNLIDTAGIRK 316 Query: 83 AKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 K + MI ++ I+ D V V+D+ + L + I ++ ++I NK Sbjct: 317 KKMIEYGPEFFMINRTFKAIQKCDCVLFVIDASTGITEQDQKLSERIQEQGKSCVIIFNK 376 Query: 140 IDCVKP-------------ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D + +R+L+ A+ L SA G+ C+ + +Y+ S + Sbjct: 377 WDKISSKDKLNFQKFKLLIKRMLQPISWADVL-------FTSAINGNSCNKIFDYIDSAI 429 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 8/185 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGA--KVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 N R VA+VG N GKSTLVNR GA SIV TR E Q + D Sbjct: 74 NRRIPIVAIVGRGNVGKSTLVNRISGAFEDGSIVHDLEGVTRDKNYRKAFWCEHQFLVTD 133 Query: 77 TPGIF---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G N + + + + I+ A+++ VVD EL +N +L + + + + Sbjct: 134 TGGFAFEENNSNKFEADVKEQALKAIEEANVIIFVVDGKCELDINDIELANYLKFQKTPV 193 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 +L +NK + +K + + L F E +SA G D +L+ + LP + + Sbjct: 194 LLAVNKSENLK--KFDSEGSKFWSLGFGE-PIPISAIHGTNTDVLLDKTITHLPKISFPF 250 Query: 194 SADQI 198 S I Sbjct: 251 SETSI 255 >gi|301753859|ref|XP_002912763.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like isoform 1 [Ailuropoda melanoleuca] Length = 491 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 17/172 (9%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V + G NAGKS+LVN VSIV+ + TTR ++ V + DT G Sbjct: 247 RSGAHVVVAGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPALLSDTAG 306 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA---------KRS 130 + + +R + ++ AD++ V+D+ + + L I + S Sbjct: 307 LREGVGPVEQEGVRRARERLEQADLILAVLDASDLASPSSCNFLDTIVTPAGAGNPKENS 366 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 RL+L+LNK D LL + + + ++S G G D +L L Sbjct: 367 QRLLLVLNKSD------LLPRGG-PDPSPNLPPHLLLSCLTGEGLDGLLEAL 411 >gi|227529194|ref|ZP_03959243.1| GTP-binding protein EngA [Lactobacillus vaginalis ATCC 49540] gi|227350919|gb|EEJ41210.1| GTP-binding protein EngA [Lactobacillus vaginalis ATCC 49540] Length = 437 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 10/128 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G ++SIV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKNFNLIDTGGIEIS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + + I AD++ LVVD ++ + D +++AK RS + ++L +NK Sbjct: 65 DQPLLTQIRQQAEVAIDEADVIVLVVD----IQNGVTDADEQVAKILYRSDKPIVLAVNK 120 Query: 140 IDCVKPER 147 +D PER Sbjct: 121 VD--NPER 126 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 14/137 (10%) Query: 18 DNSRSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVF 74 DN G + +L+G N GKS+LVN +G IV++ TTR + + K+ + Sbjct: 168 DNEDDGTIHFSLIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTRFTAKDGREFTM 227 Query: 75 LDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 +DT GI Y + + S I +D+V +V+++ I +L K IA + Sbjct: 228 IDTAGIRKKGKIYENTERYSLMRSMRAIDDSDVVLVVLNAEE----GIRELDKHIAGYAH 283 Query: 132 R----LILILNKIDCVK 144 +I+++NK D +K Sbjct: 284 EAGCGVIIVVNKWDTIK 300 >gi|34483365|emb|CAE10363.1| PUTATIVE TRNA MODIFICATION GTPASE TRME [Wolinella succinogenes] Length = 432 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N + + +IV+ TTR + + + +DT GI A+ Sbjct: 201 LAIIGRPNVGKSSLLNALLLWERAIVSDIPGTTRDTIEESLHLGNHWVRIVDTAGIREAQ 260 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSSRLILIL-NKI 140 D+ K+ I + +K +D+V + DS + L I +LL+ A + +R IL+L NK Sbjct: 261 DAIEKIGIERTLLALKESDMVLALFDSSQSLSPEDEQIKELLR--AHQENRRILVLFNKS 318 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D R L+ +E+ + +SA +G G +++L+ L S L Sbjct: 319 DL---SRELQDSELESY-----PHRYISAKEG-GVEELLSLLASWL 355 >gi|87122644|ref|ZP_01078521.1| probable GTP-binding protein [Marinomonas sp. MED121] gi|86162102|gb|EAQ63390.1| probable GTP-binding protein [Marinomonas sp. MED121] Length = 444 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 10/132 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D S V+LVG TNAGKSTL N GA+V T +R + + +V D Sbjct: 194 RDRSAVPTVSLVGYTNAGKSTLFNFITGAEVFAADQLFATLDPTLRRLDLAQVGAVVLAD 253 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIK---HADIVCLVVDS---HRELKVN-IHDLLKEIAKR 129 T G + HKL I+ +T+K AD++ VVD+ +R+ V ++ +LKEI Sbjct: 254 TVGFI--RQLPHKL-IKAFQATLKESSEADLLLHVVDASDINRDENVGHVNAVLKEIDAD 310 Query: 130 SSRLILILNKID 141 +L+ NKID Sbjct: 311 EIPTLLVFNKID 322 >gi|300814694|ref|ZP_07094944.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511167|gb|EFK38417.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 439 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%) Query: 15 FVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 +V DN V+++G N GKS+L N + SIVT+ TTR + +S K+++ + Sbjct: 167 YVADNEDDFIRVSIIGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDAIDTKISYKDNEYI 226 Query: 74 FLDTPGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 F+DT G+ K+S + + + + I+ + + L+VD+ + + + Sbjct: 227 FVDTAGLRKRKKIKESVERYSVIRTLTAIERSSVCLLLVDATEGISEQDSKIAGFAHDNN 286 Query: 131 SRLILILNKIDCVKPERLLE---QAEIANKLVFIEKT--FMVSATKGHGCDDVL 179 +I+ +NK D ++ + +A++ +L F+ +SA KG +++L Sbjct: 287 KAMIICVNKWDAIEKDTYTMKNFEADVRRELPFLSYAPIIFISAMKGTRVEELL 340 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 13/203 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 V+++G N GKSTL N+ +G K+SI TR + S + + +DT G+ Sbjct: 5 VVSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGGLDLK 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 +D + + ++ + ++ + D + ++ + K + ++IL +NK D Sbjct: 65 DEDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVNKCDA 124 Query: 143 VKP-ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 K E + + E+ + + ++VS+ +G G D+L+ + ++ Y AD D Sbjct: 125 KKTKENIYDFFELG-----LGEPYLVSSEQGTGLGDLLDEVTKSID----KYVADNEDDF 175 Query: 202 PMFHFTAE--ITREKLFLHLHKE 222 + + + LF +L KE Sbjct: 176 IRVSIIGKPNVGKSSLFNYLSKE 198 >gi|307729253|ref|YP_003906477.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1003] gi|307583788|gb|ADN57186.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1003] Length = 445 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ +DIV +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VK 144 +K Sbjct: 124 MK 125 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 13/181 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R +A+VG N GKSTL+N VG + I TTR + + +DT G Sbjct: 177 ARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAG 236 Query: 80 IFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + ++ K + + +I A++V L++D+ +++ + + ++ L++ Sbjct: 237 LRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDAHIAGFVVEQGRALVVG 296 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLCSTL 186 +NK D + R +A++ KL F++ K +SA + G DD S L Sbjct: 297 VNKWDGLDSHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYTAAMSKL 356 Query: 187 P 187 P Sbjct: 357 P 357 >gi|157364263|ref|YP_001471030.1| tRNA modification GTPase TrmE [Thermotoga lettingae TMO] gi|205829181|sp|A8F732|MNME_THELT RecName: Full=tRNA modification GTPase mnmE gi|157314867|gb|ABV33966.1| tRNA modification GTPase TrmE [Thermotoga lettingae TMO] Length = 450 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 5/150 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G N GKSTL+N V + +IVT TTR ++ + +DT GI ++ Sbjct: 216 VVIIGKPNVGKSTLLNTLVKEERAIVTDIPGTTRDLIEVPLMINGISFTLIDTAGIRHSH 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D K+ + + +++ V+D+ + N +L I ++ + I+++NKID Sbjct: 276 DEVEKIGVERAIKAADEGNLILFVLDATTPVDENDKKILSLIKEK--KYIVVINKIDATD 333 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHG 174 L+++ E+ L +SA K G Sbjct: 334 ---LIDREELKKILGTNTHVLTISALKKEG 360 >gi|122702737|emb|CAL88558.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVV 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKNFNISVSHNRGISALIDAVLRALDL 168 >gi|83310443|ref|YP_420707.1| GTP-binding protein EngA [Magnetospirillum magneticum AMB-1] gi|123542640|sp|Q2W7M7|DER_MAGSA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|82945284|dbj|BAE50148.1| GTP-binding protein engA [Magnetospirillum magneticum AMB-1] Length = 464 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D +R +A+VG N GKSTL N+ +G + + TR + + ++ +DT Sbjct: 190 DPTRPLTMAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGLTRDAIAVEWEHRGRRMKLVDT 249 Query: 78 PGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ D+ KL + + TI+ +++V LV+D+ L + + + + L+ Sbjct: 250 AGLRKKAQIYDAIEKLSVGNTIETIRMSEVVVLVMDAAAILDKQDLTIARLVVEEGRALV 309 Query: 135 LILNKIDCV-KPE----RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 L +NK D V P+ RL ++ E + T +SA G G + +++ + T Sbjct: 310 LAINKWDVVDDPQTALKRLKDRLETSLPQARGVATVTLSALTGRGIEKLMDAVLDT 365 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA++G N GKSTL NR VG +++IV TR G S + +DT G + Sbjct: 4 TVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGFEDD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL----ILILN 138 DS M + + AD+ L++DS + + L + A RL IL+ N Sbjct: 64 GGDSIEARMRHQTDMAVAEADVALLLIDS----RAGVTPLDRHFADHLRRLPTPVILVAN 119 Query: 139 K 139 K Sbjct: 120 K 120 >gi|289666002|ref|ZP_06487583.1| GTP-binding protein EngA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 465 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ E Q + +DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 ++ R + + AD+V VVD RE ++ D +L + K + +L++NKID Sbjct: 65 EEGLAGATARQARAAAGEADLVLFVVDG-REGASSLDDEILAWLRKLARPTVLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E A +SA G D++L + + LP Sbjct: 124 TDEETV--RSEFAR--YGFSDVVALSAAHRQGIDELLEEVAARLP 164 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDGRQYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + QAE ++ KL F+ + +SA G G ++ + A +S + Sbjct: 301 G-QSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGMRELFQAIHRAHASATHEFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|312114899|ref|YP_004012495.1| ribosome-associated GTPase EngA [Rhodomicrobium vannielii ATCC 17100] gi|311220028|gb|ADP71396.1| ribosome-associated GTPase EngA [Rhodomicrobium vannielii ATCC 17100] Length = 464 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 11/167 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKSTL NR G ++++V TR + +V DT G+ +A Sbjct: 4 TVAIIGRPNVGKSTLFNRLAGRRLALVDDLPGLTRDRKETQIRINRRDVVLTDTAGLEDA 63 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILILNK 139 + S M S I +D++ V+D+ EL I DL++ K IL+ NK Sbjct: 64 EPGSIAARMREQSEQAIAESDLILFVIDARAELTSVDRGIADLVRSSGK---PFILVANK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + R + + + + + VSA G D++ + + L Sbjct: 121 SES----RASDAGYYGSYELGLGEPLPVSAEHNMGLGDLMAEVTNRL 163 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 26/201 (12%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q +R +A+ G NAGKSTLVN +G + I + TR + + ++ D Sbjct: 185 QARARPLKLAIAGRPNAGKSTLVNALLGEERMITGPEAGLTRDAIAADFQWRGRKVRLYD 244 Query: 77 TPGI-----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRS 130 T G+ N + L + + I+ A+IV L++D+ L + DL + ++ +R Sbjct: 245 TAGLRRKARINVRS--ETLAVGDALRAIRFAEIVVLLLDAQSPL--DKQDLTIADLVERE 300 Query: 131 SR-LILILNKIDCV-KPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVL----- 179 R L+ +NK D V +P+ L + + + + + VSA G G D V+ Sbjct: 301 GRGLVFAVNKWDLVPEPQAYLAELRKSAERILPQLAGAPLVPVSAISGRGLDKVMDAAFK 360 Query: 180 -----NYLCSTLPLAPWVYSA 195 N ST L W +A Sbjct: 361 VNEAWNKRISTAALNRWFATA 381 >gi|256811453|ref|YP_003128822.1| small GTP-binding protein [Methanocaldococcus fervens AG86] gi|256794653|gb|ACV25322.1| small GTP-binding protein [Methanocaldococcus fervens AG86] Length = 369 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S VA VG + GKSTL+N+ AK + + TT +IV G++ K ++I LD PG Sbjct: 60 SGDATVAFVGFPSVGKSTLLNKLTNAKSEVGAYAF-TTLTIVPGVMEHKGAKIQLLDAPG 118 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 I S + S ++ AD++ L VD Sbjct: 119 IIVGASSGKGRGTEV-LSAVRSADMILLTVD 148 >gi|195151833|ref|XP_002016843.1| GL21987 [Drosophila persimilis] gi|194111900|gb|EDW33943.1| GL21987 [Drosophila persimilis] Length = 493 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 20/160 (12%) Query: 4 GEI-TFFNEHK--DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 GEI N+ + + ++D R+ ++GA N GKS+L+N VSIVT + TTR I Sbjct: 221 GEIRNHLNDQRQGELLRDGVRT---VIIGAPNVGKSSLLNLLCQRSVSIVTEQAGTTRDI 277 Query: 61 VRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKV 117 + + + ++F DT G+ N DS + + + + +D++ L+ D+ REL Sbjct: 278 IETMHNFGGYPVIFSDTAGLRRNTADSIEREGMARAKKCLAESDLILLLTDAMAVRELDS 337 Query: 118 N------IHDLLKEIAKRSS-----RLILILNKIDCVKPE 146 N + L E+ S R+ L+ NK D + E Sbjct: 338 NETVAGYVESYLNELDIASDLCSGKRVQLVANKTDTLSLE 377 >gi|18075573|emb|CAD11182.1| GTP-binding protein [Helicobacter pylori] gi|122702805|emb|CAL88592.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGAPKSFNISVSHNRGISALIDAVLDALNL 168 >gi|268594476|ref|ZP_06128643.1| GTP-binding protein engA [Neisseria gonorrhoeae 35/02] gi|268596471|ref|ZP_06130638.1| GTP-binding protein engA [Neisseria gonorrhoeae FA19] gi|291044231|ref|ZP_06569940.1| GTP-binding protein engA [Neisseria gonorrhoeae DGI2] gi|293399430|ref|ZP_06643583.1| ribosome-associated GTPase EngA [Neisseria gonorrhoeae F62] gi|268547865|gb|EEZ43283.1| GTP-binding protein engA [Neisseria gonorrhoeae 35/02] gi|268550259|gb|EEZ45278.1| GTP-binding protein engA [Neisseria gonorrhoeae FA19] gi|291011125|gb|EFE03121.1| GTP-binding protein engA [Neisseria gonorrhoeae DGI2] gi|291609999|gb|EFF39121.1| ribosome-associated GTPase EngA [Neisseria gonorrhoeae F62] Length = 502 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 8/168 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G K I TTR + I E+E + +DT Sbjct: 189 DAKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 247 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 248 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 307 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + +NK D + ER + + +I+ KL F++ K +SA K G D + Sbjct: 308 VAVNKWDGISEERREQVKRDISRKLYFLDFAKFHFISALKERGIDGLF 355 Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL NR K ++V TR G +DT G Sbjct: 21 TIALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPV 80 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD L Sbjct: 81 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGL 113 >gi|261884860|ref|ZP_06008899.1| GTP-binding protein EngA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 153 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 2/137 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + LVG N GKS+L NR +++I + TTR + + + + +D+ G+ ++ Sbjct: 4 IILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDSN 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + I + + K+ADI+ +VD E++ + + L++NK+D K Sbjct: 64 ELFKNVKIN-TLNEAKNADIIVFMVDGKNFPDEIDKRFFYELSNLNKPIALVVNKVDSKK 122 Query: 145 P-ERLLEQAEIANKLVF 160 ER E E K +F Sbjct: 123 DEERSWEFNEFGAKYIF 139 >gi|302527998|ref|ZP_07280340.1| ribosome-associated GTPase EngA [Streptomyces sp. AA4] gi|302436893|gb|EFL08709.1| ribosome-associated GTPase EngA [Streptomyces sp. AA4] Length = 493 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 49 VLAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVAYDAFWAGRRFTLVDTGGWEPD 108 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + ++ AD V LVVD+ + + + + ++L NK+D Sbjct: 109 ATGLQASVAQQAEMAMQTADAVLLVVDATVGATATDEAVARVLRRSKKPVLLAANKVDD- 167 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 +RLL L E VSA G D+L+ + + LP AP Sbjct: 168 --DRLLADTASLWSLGLGEP-HPVSALHGRSSGDLLDSIMAALPEAP 211 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VALVG N GKS+L+NR G + S+V TT V +V F+DT G+ Sbjct: 224 VALVGKPNVGKSSLLNRLSGEQRSVVDSVAGTTVDPVDSLVELDGEIWRFVDTAGLRKRV 283 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 N D + + I A++ +++D+ L +L + + +L+ NK D Sbjct: 284 NFADGAEYYASLRTKTAIDAAEVALVLLDASEPLTEQDLRVLTMVVEAGRACVLVFNKWD 343 Query: 142 CVKPER 147 V +R Sbjct: 344 LVDEDR 349 >gi|254493337|ref|ZP_05106508.1| GTP-binding protein engA [Neisseria gonorrhoeae 1291] gi|268598604|ref|ZP_06132771.1| GTP-binding protein engA [Neisseria gonorrhoeae MS11] gi|268600957|ref|ZP_06135124.1| GTP-binding protein engA [Neisseria gonorrhoeae PID18] gi|268603264|ref|ZP_06137431.1| GTP-binding protein engA [Neisseria gonorrhoeae PID1] gi|268681744|ref|ZP_06148606.1| GTP-binding protein engA [Neisseria gonorrhoeae PID332] gi|268683971|ref|ZP_06150833.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-92-679] gi|268686216|ref|ZP_06153078.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-93-1035] gi|226512377|gb|EEH61722.1| GTP-binding protein engA [Neisseria gonorrhoeae 1291] gi|268582735|gb|EEZ47411.1| GTP-binding protein engA [Neisseria gonorrhoeae MS11] gi|268585088|gb|EEZ49764.1| GTP-binding protein engA [Neisseria gonorrhoeae PID18] gi|268587395|gb|EEZ52071.1| GTP-binding protein engA [Neisseria gonorrhoeae PID1] gi|268622028|gb|EEZ54428.1| GTP-binding protein engA [Neisseria gonorrhoeae PID332] gi|268624255|gb|EEZ56655.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-92-679] gi|268626500|gb|EEZ58900.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-93-1035] Length = 500 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 8/168 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G K I TTR + I E+E + +DT Sbjct: 187 DAKHPVFAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 245 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 246 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 305 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + +NK D + ER + + +I+ KL F++ K +SA K G D + Sbjct: 306 VAVNKWDGISEERREQVKRDISRKLYFLDFAKFHFISALKERGIDGLF 353 Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL+G N GKSTL NR K ++V TR G +DT G Sbjct: 19 TIALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPV 78 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD L Sbjct: 79 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGL 111 >gi|154175320|ref|YP_001407734.1| GTP-binding protein EngA [Campylobacter curvus 525.92] gi|166224320|sp|A7GWZ2|DER_CAMC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|112803598|gb|EAU00942.1| putative GTPase [Campylobacter curvus 525.92] Length = 461 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 5/162 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + LVG N GKS+L NR +++I + TTR + + + + +D+ G+ + Sbjct: 4 IILVGKPNVGKSSLFNRLARQRIAITSEISGTTRDTNKAKIEVEGKDCLLIDSGGLDESS 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + + + + + K++DI+ +VD + E+ K + + L++NKID K Sbjct: 64 ELFKNVKFK-TLAEAKNSDIIIYMVDGKMAPSDEDRAIFYELCKLNLPIALVINKIDSKK 122 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E+ E N +++ F +S + G D++ ++ L Sbjct: 123 DEQ--RAWEFIN--FGVKEIFEISVSHNTGIDELSQWIAGQL 160 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 8/151 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L+N V ++V+ TT V I + F+DT GI Sbjct: 199 VGIVGRVNVGKSSLLNALVKDARAVVSDIAGTTIDPVNEIYEHEGRIFEFVDTAGIRKRG 258 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-RLILILNKID 141 + + + + ++++DI LV+DS L + + + +A + + +I++LNK D Sbjct: 259 KIEGIERYALNRTEKILENSDIALLVLDSSEPL-TELDERIAGVANKFNLGMIIVLNKWD 317 Query: 142 CVKPERLLEQ--AEIANKLVFIEKTFMVSAT 170 K ER ++ EI ++ F+ ++S + Sbjct: 318 --KSEREFDELVKEIKDRFKFLSYAPIISVS 346 >gi|122702707|emb|CAL88543.1| GTPase [Helicobacter pylori] Length = 170 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K + I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KGALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILNALNL 168 >gi|118591441|ref|ZP_01548839.1| tRNA modification GTPase [Stappia aggregata IAM 12614] gi|118436113|gb|EAV42756.1| tRNA modification GTPase [Stappia aggregata IAM 12614] Length = 449 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V L+GA NAGKS+L+N G +V+IVT + TTR ++ + + +DT G Sbjct: 214 RSGLQVVLMGAPNAGKSSLLNAIAGREVAIVTEEAGTTRDVIEVHLDLSGYPVTLVDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 + + K IR + + AD++ V+ Sbjct: 274 LRQTEGVVEKEGIRRAEERGRGADLILWAVE 304 >gi|313893537|ref|ZP_07827107.1| tRNA modification GTPase TrmE [Veillonella sp. oral taxon 158 str. F0412] gi|313441980|gb|EFR60402.1| tRNA modification GTPase TrmE [Veillonella sp. oral taxon 158 str. F0412] Length = 461 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG NAGKS+L+N + +IVT TTR + ++ + + +DT G Sbjct: 221 RDGITTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D+ L + + I ADIV V+D L ++L ++ ++ I++LNK Sbjct: 281 IRDTQDTVEALGVERARDYINKADIVLCVIDGSTPLTPEEIEILTSVSGLNT--IVLLNK 338 Query: 140 IDCVK 144 D + Sbjct: 339 SDVAQ 343 >gi|312871411|ref|ZP_07731506.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 3008A-a] gi|311093064|gb|EFQ51413.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 3008A-a] Length = 435 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR + ++V+IV + TR + Q V +DT GI Sbjct: 5 VVALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + + I AD++ ++ D + N+ + + +I ++ + +IL +NK D Sbjct: 65 DNVIEEQIKTQAEIAINEADVIVMLSDVTGHV-TNLDETIAKILYKAKKPIILAINKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 PE+ + + + + + VS + G G D+L+ + S Sbjct: 123 -NPEQRNDIYDFYS--LGLGDPIPVSGSHGTGLGDLLDAIVS 161 Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +++G N GKS++VN +G IV TTR + I + + +DT GI Sbjct: 178 SIIGRPNVGKSSIVNSILGENRVIVAEMEGTTRDAIDTIFEKDGQKYTIVDTAGIRRKGK 237 Query: 86 SYHKL---MIRLSWSTIKHADIVCLVVDS 111 Y K+ + S S I+ +D+ +V+D+ Sbjct: 238 VYEKVEKYSVMRSISAIEQSDVAIIVIDA 266 >gi|269797893|ref|YP_003311793.1| small GTP-binding protein [Veillonella parvula DSM 2008] gi|269094522|gb|ACZ24513.1| small GTP-binding protein [Veillonella parvula DSM 2008] Length = 444 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N V ++SIV TR + + +DT GI Sbjct: 5 LVAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFI 64 Query: 84 KDSYHKL--MIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 ++ H + M+RL I+ AD++ VVD + + V + + I + S + ++L++NK Sbjct: 65 TENSHVIPKMMRLQAELAIEEADVILFVVDGKQGI-VPADEEVANILRASGKPIVLVVNK 123 Query: 140 IDCVKPE 146 ID V E Sbjct: 124 IDSVNQE 130 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+ + VA++G N GKS+L N +G IV+ TTR + + + + V +DT Sbjct: 174 DDEDTIHVAVIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHEGQKFVLIDT 233 Query: 78 PGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ +++ + I S ++ ADIV LV+D+ + + + ++ Sbjct: 234 AGMRRKSKIEEAVERYSIVRSLRSVDRADIVVLVLDAQDGVTEQDKKIAGYAYEAGKGVV 293 Query: 135 LILNKIDCVK 144 +++NK D VK Sbjct: 294 IVVNKWDLVK 303 >gi|254515875|ref|ZP_05127935.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR5-3] gi|219675597|gb|EED31963.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR5-3] Length = 458 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + GA NAGKS+L+N+ +IVT TTR ++R V + +DT G+ ++ D+ Sbjct: 224 IAGAPNAGKSSLLNQLAEQDSAIVTDIPGTTRDVLREYVQIDGLPLHIVDTAGLRDSADA 283 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDS 111 + IR + + ++ AD + LV+DS Sbjct: 284 IEQEGIRRARTEMQSADHILLVIDS 308 >gi|198453278|ref|XP_002137635.1| GA27334 [Drosophila pseudoobscura pseudoobscura] gi|198132291|gb|EDY68193.1| GA27334 [Drosophila pseudoobscura pseudoobscura] Length = 493 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 20/160 (12%) Query: 4 GEI-TFFNEHK--DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 GEI N+ + + ++D R+ ++GA N GKS+L+N VSIVT + TTR I Sbjct: 221 GEIRNHLNDQRQGELLRDGVRT---VIIGAPNVGKSSLLNLLCQRSVSIVTEQAGTTRDI 277 Query: 61 VRGIVSEKESQIVFLDTPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH--RELKV 117 + + + ++F DT G+ N DS + + + + +D++ L+ D+ REL Sbjct: 278 IETMHNFGGYPVIFSDTAGLRRNTADSIEREGMARAKKCLAESDLILLLTDAMAVRELDS 337 Query: 118 N------IHDLLKEIAKRSS-----RLILILNKIDCVKPE 146 N + L E+ S R+ L+ NK D + E Sbjct: 338 NETVAGYVESYLNELDIASDLCSEKRVQLVANKTDTLSLE 377 >gi|167041117|gb|ABZ05877.1| putative GTPase of unknown function [uncultured marine microorganism HF4000_001A02] Length = 438 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKS+L N + + SIVT TTR + ++ ++I +DT G+ Sbjct: 181 LAIVGMPNVGKSSLTNALLKKEQSIVTPIAGTTRDSIDSVLKYYGNEITLVDTAGLRKRS 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS + I++ D+ +++D + +L + K+ LIL++NK D Sbjct: 241 KVSDSIEFYSSLRTQRAIEYCDVALVLIDGEKGFSKQDKSILDYVIKKGKGLILLVNKWD 300 Query: 142 CV 143 V Sbjct: 301 LV 302 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 5/165 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-IFNA 83 +A+VG N GKST NR + + +IV TR + G + + F+DT G I Sbjct: 6 IAIVGRPNVGKSTFFNRVLRQRKAIVDAMEGITRDRIYGDMDWVGHNLTFVDTGGYIPED 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D ++ + + + + + AD++ L+VD + + L + + + + IL++NK D + Sbjct: 66 VDIFNSAIRQQAQAAVAEADLILLMVDGREDPTASDKTLAQFVRETGKKSILVVNKCDTL 125 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 L EQ KL IE VS+ G D+L+ + L L Sbjct: 126 A---LDEQVNGFYKL-GIEPMHPVSSLSGRLTGDLLDLVLKQLDL 166 >gi|88803376|ref|ZP_01118902.1| tRNA modification GTPase [Polaribacter irgensii 23-P] gi|88780942|gb|EAR12121.1| tRNA modification GTPase [Polaribacter irgensii 23-P] Length = 464 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKSTL+N + + +IV+ TTR + + F+DT GI Sbjct: 225 VAIIGEPNVGKSTLLNTLLNEEKAIVSEIAGTTRDAIEDELIIAGVAFRFIDTAGIRETI 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS-----RLILILNK 139 D + I+ ++ +A ++ ++D+++ N L EI S R+++I NK Sbjct: 285 DIIESIGIKKAYEKADNAQLIVFLIDANK-FNHNQPQFLTEIDTIKSRFPTKRVLVIANK 343 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 ID + E+AE+ + IE ++SA G + Sbjct: 344 IDTLLAS---EKAELQTE---IENLILLSAKNNTGVE 374 >gi|255263172|ref|ZP_05342514.1| GTP-binding protein HflX [Thalassiobium sp. R2A62] gi|255105507|gb|EET48181.1| GTP-binding protein HflX [Thalassiobium sp. R2A62] Length = 452 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 12/173 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +R + +I+ DT G + Sbjct: 209 IVALVGYTNAGKSTLFNRLTGAEVFAKDMLFATLDPTMRKVDLPTGDEIILSDTVGFISD 268 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLV-----VDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + R + + AD++ V D+H + + + L K + + L+ + N Sbjct: 269 LPTELVASFRATLEEVLDADLILHVRDISSADTHEQSRDVMEILTKLGVGQDAPLLEVWN 328 Query: 139 KIDCVKPE--RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 KID V+ + + L A + +F+ S+ G G D +L + L A Sbjct: 329 KIDQVELDVRKGLNTASDRDDAIFV-----TSSVTGEGMDPLLAAISDILNAA 376 >gi|126653372|ref|ZP_01725476.1| GTP-binding protein EngA [Bacillus sp. B14905] gi|126589888|gb|EAZ84019.1| GTP-binding protein EngA [Bacillus sp. B14905] Length = 436 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + I+ AD++ + + + + K + K ++L +NKID Sbjct: 65 DEPFLEQIRQQAEIAIEEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKID-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + E L F E + +S + G G D+L+ P Sbjct: 123 NPD-MREMIYDFYALGFGEP-WPISGSHGLGLGDLLDECAKHFP 164 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN F+G IV+ TTR + + + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNAFLGQDRVIVSDIAGTTRDAIDTPYAYDDQEYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I+ +D+V +V+++ ++ + + +++++NK D Sbjct: 239 IYETTEKYSVLRALRAIERSDVVLVVMNAEEGIQEQDKKIAGYAHEAGKAVVIVVNKWDA 298 Query: 143 VK 144 ++ Sbjct: 299 IE 300 >gi|332880020|ref|ZP_08447704.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682016|gb|EGJ54929.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 434 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 5/167 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR + + +IV TR G + +DT G + Sbjct: 2 SAIVAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVEFSVIDTGGYL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D++ K + + I AD + +V+ L + + K + +++NK+ Sbjct: 62 AGGDDTFQKEIDKQVNLAIDEADAIIFMVNVEDGLTGMDESVAALLRKSKKPVFVVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + A L F E F +S+ G G D+L+ L LP Sbjct: 122 DS---NNRRDDAHEFYALGF-EHLFSISSINGSGTGDLLDELVKNLP 164 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRKSK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I+H+D+ L++D+ R + ++ +A+R+ + I+IL NK D Sbjct: 238 VKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFESQDANIF-WLAQRNRKGIVILVNKWD 296 Query: 142 CVKPE 146 V+ E Sbjct: 297 LVEKE 301 >gi|318061403|ref|ZP_07980124.1| GTP-binding protein Der [Streptomyces sp. SA3_actG] gi|318078001|ref|ZP_07985333.1| GTP-binding protein Der [Streptomyces sp. SA3_actF] Length = 488 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVNR +G + ++V + TR V + +DT G Sbjct: 52 LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 111 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + I+ +D V VVD+ +++ + K ++L NK+D Sbjct: 112 LGIDASVAAQAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDG-- 169 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P + A + + + + + VSA G G D+L+ + LP AP Sbjct: 170 PSGEADAATLWS--LGLGEPHPVSALHGRGTGDMLDAVLEALPDAP 213 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VAL+G N GKS+L+N+ G +V + TTR V ++ F+DT GI Sbjct: 228 VALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 287 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++D + V +L L+L N Sbjct: 288 HLQQGADYYASLR---TAAAVEKAEVAVVLIDGADSISVQDQRILTMAVDAGRALVLAYN 344 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 345 KWDTLDEER 353 >gi|238018228|ref|ZP_04598654.1| hypothetical protein VEIDISOL_00052 [Veillonella dispar ATCC 17748] gi|237864699|gb|EEP65989.1| hypothetical protein VEIDISOL_00052 [Veillonella dispar ATCC 17748] Length = 461 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 13/159 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG NAGKS+L+N + +IVT TTR + ++ + + +DT G Sbjct: 221 RDGITTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D+ L + + I ADIV V+D L ++L ++ ++ I++LNK Sbjct: 281 IRDTQDTVEALGVERARDYINKADIVLCVIDGSTPLTPEEIEILTSVSGLNT--IVLLNK 338 Query: 140 ID---CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 D V E + E IE+ +SA +G G Sbjct: 339 SDMAQVVTDEHIKEHG----NFTAIER---ISAKEGEGS 370 >gi|138895798|ref|YP_001126251.1| GTP-binding protein EngA [Geobacillus thermodenitrificans NG80-2] gi|196248680|ref|ZP_03147380.1| small GTP-binding protein [Geobacillus sp. G11MC16] gi|166198718|sp|A4IQA2|DER_GEOTN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134267311|gb|ABO67506.1| GTP-binding protein-like protein [Geobacillus thermodenitrificans NG80-2] gi|196211556|gb|EDY06315.1| small GTP-binding protein [Geobacillus sp. G11MC16] Length = 436 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHSFYLIDTGGI-DI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + IR I AD++ + + + ++ K + + + ++L +NKID Sbjct: 64 GDEPLLVQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKLLRRSNKPVVLAVNKIDN 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L+ L F E + +S G G D+L+ + P Sbjct: 124 PEMRDLIYD---FYALGFGE-PYPISGAHGTGLGDLLDAVARHFP 164 Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-- 84 L+G N GKS+LVN +G + IV+ TTR V + + V +DT G+ Sbjct: 180 LIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTSFVREGQKYVIIDTAGMRKRGKI 239 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +S K + + I+ +D+V +V+++ + + + +IL++NK D V Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVVLNAEEGIIEQDKKIAGYAHEAGRGVILVVNKWDAV 299 Query: 144 K 144 + Sbjct: 300 E 300 >gi|161830089|ref|YP_001597738.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331] gi|14195264|sp|P94612|MNME_COXBU RecName: Full=tRNA modification GTPase mnmE gi|189036199|sp|A9KBS9|MNME_COXBN RecName: Full=tRNA modification GTPase mnmE gi|189036200|sp|A9NBA7|MNME_COXBR RecName: Full=tRNA modification GTPase mnmE gi|1780759|emb|CAA71458.1| unnamed protein product [Coxiella burnetii] gi|161761956|gb|ABX77598.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331] Length = 452 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 11/130 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G N GKS+L+N G + +IVT TTR I+R + I +DT G Sbjct: 214 REGITVVIAGEPNVGKSSLLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR------L 133 + +D K +R + ++ AD++ L++D+ + + D K IA+ S Sbjct: 274 LRLTEDVVEKEGVRRTQKAVQQADLLLLMIDASKPTE----DFKKIIAQWFSENDNKIPT 329 Query: 134 ILILNKIDCV 143 +++ NKID + Sbjct: 330 LIVENKIDLI 339 >gi|84516232|ref|ZP_01003592.1| GTP-binding protein HflX [Loktanella vestfoldensis SKA53] gi|84509928|gb|EAQ06385.1| GTP-binding protein HflX [Loktanella vestfoldensis SKA53] Length = 424 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 8/167 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL N GA V T +R I +++ DT G + Sbjct: 206 VALVGYTNAGKSTLFNMLTGADVLAKDMLFATLDPTMRKITLPTGDEVIMSDTVGFISDL 265 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAK----RSSRLILILNK 139 + R + + AD++ + D SH + + D++ + K ++ LI + NK Sbjct: 266 PTELVAAFRATLEEVLDADLILHIRDISHDQTEEQACDVMAILHKLGVAENAPLIEVWNK 325 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +D ++ E + N+ E F VSA G G +L + L Sbjct: 326 VDLLQGEAFEGR---VNQAARTEDLFAVSALTGEGMAALLAAIPEKL 369 >gi|292806490|gb|ADE42375.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VV+ S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVNGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRVLNL 168 >gi|291319989|ref|YP_003515247.1| tRNA modification GTPase TrmE [Mycoplasma agalactiae] gi|290752318|emb|CBH40289.1| TRNA modification GTPase (TrmE) [Mycoplasma agalactiae] Length = 445 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+++N + +IVT TTR IV + K F+DT GI + K Sbjct: 221 IAILGKPNVGKSSILNAILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFIDTAGIRDTK 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 + K+ I S+ I+ AD+V + D Sbjct: 281 EKIEKIGIDKSFEQIEKADVVLHIYD 306 >gi|167648978|ref|YP_001686641.1| tRNA modification GTPase TrmE [Caulobacter sp. K31] gi|189036195|sp|B0T6E0|MNME_CAUSK RecName: Full=tRNA modification GTPase mnmE gi|167351408|gb|ABZ74143.1| tRNA modification GTPase TrmE [Caulobacter sp. K31] Length = 447 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 7/135 (5%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V+D R +ALVGA NAGKSTL+N V +IVT TTR I+ ++ + + Sbjct: 209 VRDGYR---IALVGAPNAGKSTLLNALVERDAAIVTSTPGTTRDIIEVPLTLGGYKTLLA 265 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 DT G+ +D+ +R + + AD+ V+D+ V D L I + Sbjct: 266 DTAGLRKTEDTIEAEGVRRARAWAAGADLRLWVIDAAM-FHVKQDDELAVIQRGD---WA 321 Query: 136 ILNKIDCVKPERLLE 150 ++NKID V RL E Sbjct: 322 VINKIDLVDAGRLAE 336 >gi|218679046|ref|ZP_03526943.1| GTPase EngB [Rhizobium etli CIAT 894] Length = 185 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 23/187 (12%) Query: 25 VALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQI---VFLDT 77 +A G +N GKS+L+N VG A+ S + Q V S + + +D Sbjct: 1 MAFAGRSNVGKSSLINALVGQKGLARTSNTPGRTQELNYFVPDGYSGEGGDLPPTAIVDM 60 Query: 78 PGIFNAK------DSYHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 PG A+ D + KL+ +T+K V +++DS +K N D+L + K Sbjct: 61 PGYGYAQAPKEQVDKWTKLVFDYLRGRATLKR---VYVLIDSRHGIKKNDEDVLDLLDKA 117 Query: 130 SSRLILILNKIDCVK----PERLLEQAE-IANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 + ++L K D +K P+ L E AE I + S+ KG G D++ + Sbjct: 118 AVSYQIVLTKTDKIKAAGVPKLLAETAERIRKRPAAYPAVLSTSSEKGDGMDELRQAIAE 177 Query: 185 TLPLAPW 191 T+ +A W Sbjct: 178 TVGIAHW 184 >gi|171920840|ref|ZP_02695919.2| GTP-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903040|gb|EDT49329.1| GTP-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 57 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/54 (46%), Positives = 38/54 (70%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 + G VA+VG N GKSTL+N + KVSI+++K QTTR+ ++ I + +S I+F Sbjct: 4 KYGIVAIVGKPNVGKSTLINAIMRKKVSIISNKPQTTRNAIKEIYEDDDSAIIF 57 >gi|118595228|ref|ZP_01552575.1| GTPase involved in cell partioning and DNA repair [Methylophilales bacterium HTCC2181] gi|118441006|gb|EAV47633.1| GTPase involved in cell partioning and DNA repair [Methylophilales bacterium HTCC2181] Length = 338 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 26/168 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G NAGKS+L+ AK + + T + + + + E V D PG+ Sbjct: 162 VGLLGMPNAGKSSLIRSISAAKPKVADYPFTTLQPNLGVVRVDNERSFVVADIPGLIEGA 221 Query: 85 DSYHKLMIRLSWSTIKHADIVCLV------------VDSHRELKVNIHDLLKEIAKRSSR 132 H L ++H D L+ VD +E ++ E+ K S Sbjct: 222 ADGHG----LGHQFLRHLDRTKLLLHLIDIAPFDESVDPAKEADA----IVNELKKYSMD 273 Query: 133 LI-----LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 L L+LNKID + Q EI NK+ + K F +SA G GC Sbjct: 274 LFNKPRWLVLNKIDLTSKVDQI-QNEIKNKMQWSGKIFCISAINGKGC 320 >gi|81428627|ref|YP_395627.1| GTP-binding protein EngA [Lactobacillus sakei subsp. sakei 23K] gi|123564226|sp|Q38WW3|DER_LACSS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78610269|emb|CAI55318.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K] Length = 436 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR G ++SIV TR + + +DT GI + Sbjct: 5 VIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTASEWLGHEFSLIDTGGIEIS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKIDC 142 + + + + + I AD++ +V S RE + + + +I R+ + IL+ +NK D Sbjct: 65 DAPFMEQIKQQAEIAIDEADVIIFLV-SAREGVTDADERVAQILYRAEKPILLGVNKAD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE+ + + + L F + VS G G D+L+ + P Sbjct: 123 -NPEQRQDIFDFYS-LGFGDP-IPVSGAHGQGVGDLLDAAVAKFP 164 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 4/135 (2%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQI 72 D +++ S +L+G N GKS+LVN + IV+ TTR +I ++E + Sbjct: 166 DLEEEDDDSIKFSLIGRPNVGKSSLVNAMLKEDRVIVSQIEGTTRDAIDTKFMAENNQEF 225 Query: 73 VFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 +DT GI Y K + + I +D+V +V+++ ++ + + Sbjct: 226 TMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLVVLNAEEGIREQDKKVAGYAHEA 285 Query: 130 SSRLILILNKIDCVK 144 +I+++NK D ++ Sbjct: 286 GRGIIIVVNKWDTLE 300 >gi|315608192|ref|ZP_07883184.1| tRNA modification GTPase TrmE [Prevotella buccae ATCC 33574] gi|315250161|gb|EFU30158.1| tRNA modification GTPase TrmE [Prevotella buccae ATCC 33574] Length = 512 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+NR + + +IV+ TTR + F+DT GI + Sbjct: 228 VAIVGKTNVGKSTLLNRLLHEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTE 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I ++ I A +V ++D+ Sbjct: 288 DEVERIGIDRTYQKIDQATVVVWMIDT 314 >gi|325678533|ref|ZP_08158144.1| tRNA modification GTPase TrmE [Ruminococcus albus 8] gi|324109752|gb|EGC03957.1| tRNA modification GTPase TrmE [Ruminococcus albus 8] Length = 455 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFNAK 84 + G N GKSTL+N +G SIVT TTR ++ S + +++F DT GI + + Sbjct: 223 IAGRPNVGKSTLMNLLLGYDRSIVTEVAGTTRDVIE--ESARLGELIFRLSDTAGIRDTE 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K+ + ++ ++ +V V D+ + + LL+++ R +++LNK D Sbjct: 281 DKVEKIGVEMAQKRLEECMLVIEVFDTSVKPDDDDTALLEKVRSLGKRALIVLNKSD 337 >gi|238924644|ref|YP_002938160.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656] gi|259645876|sp|C4ZD63|DER_EUBR3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238876319|gb|ACR76026.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656] gi|291525305|emb|CBK90892.1| ribosome-associated GTPase EngA [Eubacterium rectale DSM 17629] gi|291529236|emb|CBK94822.1| ribosome-associated GTPase EngA [Eubacterium rectale M104/1] Length = 441 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G ++SIV TR + VS + +DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVSWLDYNFTMIDTGGIEPE 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 + D M + I AD++ + D + L V+ + ++ +RS + ++L++NK+D Sbjct: 65 SGDVILSQMREQAQIAIDTADVIIFITDVKQGL-VDSDSKVADMLRRSHKPVVLVVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + + + E N + I +SA G D+L+ + P Sbjct: 124 SFE-KYMTDVYEFYN--LGIGDPHPISAASMLGLGDMLDEVVKHFP 166 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG N GKS+L+N+ IV+ TTR + + + +F+DT G+ Sbjct: 180 VAIVGKPNVGKSSLINKLAREDRVIVSDIAGTTRDAIDTAIKYDGKEYIFIDTAGLRRKN 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + S ++ AD+V +V+D+ + + +R +I+ +NK D Sbjct: 240 KIKEDIERYSIIRAVSAVERADVVIVVIDATEGVTEQDAKIAGIAHERGKGIIIAVNKWD 299 Query: 142 CVKPE 146 ++ + Sbjct: 300 AIEKD 304 >gi|222152198|ref|YP_002561358.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402] gi|222121327|dbj|BAH18662.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402] Length = 454 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 214 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEIAGTTRDVLEEYVNVRGVPLRLVDTAG 273 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S +K AD++ V++++ L + L + I ++ +I+I+NK Sbjct: 274 IRETEDIVEKIGVERSREALKKADLILYVLNNNEILTEEDYKLAEII--KNEDVIVIINK 331 Query: 140 IDC 142 D Sbjct: 332 TDL 334 >gi|148284571|ref|YP_001248661.1| GTP-binding protein EngA [Orientia tsutsugamushi str. Boryong] gi|229784136|sp|A5CDT2|DER_ORITB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146740010|emb|CAM80087.1| GTP-binding protein [Orientia tsutsugamushi str. Boryong] Length = 454 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 12/154 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VALVG N GKSTL NR + SIV TR + + S ++ +DTPG+ F A Sbjct: 6 VALVGKPNVGKSTLFNRLSLREKSIVHDLPGITRD-RKYAKANLFSDLIVVDTPGLEFAA 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKI 140 S M++ S I A+I+C VVD+ + +L+++ K+SS IL++NK Sbjct: 65 AGSLEFNMMQQSLVAINEANIICFVVDAITGILPIDEECANLIRKHNKQSS-TILVINKT 123 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + KP +L+++ KL F E + +SA G G Sbjct: 124 E--KP-IILDKSYY--KLGFSE-SICISAKHGQG 151 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--N 82 +A+VG N GKST +N + + + + TR+ V I +DT G+ N Sbjct: 190 LAIVGRPNCGKSTFINAILNEERVLTGPESGLTRNSVEVDWKYCGQLIRLVDTAGVRKKN 249 Query: 83 A-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A S L + ++ TI+ A+IV +++D+ R L+ ++ ++L++NK D Sbjct: 250 AVTQSCELLSVNDTFKTIRFANIVIVMIDATRGLEQQDLSIISYAVNEGRGIVLVVNKCD 309 Query: 142 CVK 144 +K Sbjct: 310 LIK 312 >gi|73986022|ref|XP_541954.2| PREDICTED: similar to GTP binding protein 3 (mitochondrial) isoform V isoform 1 [Canis familiaris] Length = 492 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 17/172 (9%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG + + G NAGKS+LVN VSIV+ + TTR ++ V + DT G Sbjct: 247 RSGAHIVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPALLSDTAG 306 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI---------AKRS 130 + + +R + ++ AD++ V+D+ + L + ++ S Sbjct: 307 LREGAGPVEQEGVRRARQRLEQADLILAVLDATDLASPSSRSFLDTVVVPAGAGSPSENS 366 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 RL+L+LNK D LL + + + ++S G G D +L L Sbjct: 367 QRLLLVLNKSD------LLPRGG-PDLSPHLPPHLLLSCLTGEGLDGLLEAL 411 >gi|15894988|ref|NP_348337.1| GTP-binding protein EngA [Clostridium acetobutylicum ATCC 824] gi|26006729|sp|Q97ID7|DER_CLOAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15024676|gb|AAK79677.1|AE007680_10 Predicted GTPase [Clostridium acetobutylicum ATCC 824] gi|325509125|gb|ADZ20761.1| GTP-binding protein EngA [Clostridium acetobutylicum EA 2018] Length = 438 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE---SQIVFLDTPGIF 81 V +VG N GKSTL N+ G +VSIV TR I +E E + +DT GI Sbjct: 6 VTIVGRPNVGKSTLFNKLAGKRVSIVEDTPGVTRD---RIYAESEWVGKKFTIIDTGGIE 62 Query: 82 -NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D M R + I+ +D++ +VD + L +++ + K ++L++NKI Sbjct: 63 PENNDIILTQMRRQAQIAIEMSDVIIFMVDGKQGLTDTDNEVAIMLRKSKKPIVLVVNKI 122 Query: 141 D-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D V+ + E + I +S+++G G D+L+ Sbjct: 123 DKNVEENNIYEFYNLG-----IGDPVSISSSQGLGIGDMLD 158 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 4/131 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A VG N GKS+L NR +G + IV+ TTR + + ++V +DT G+ Sbjct: 179 IAFVGKPNVGKSSLTNRILGEERVIVSDIPGTTRDAIDSFLETDFGKLVLIDTAGLRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + + + I+ D+ L++D+ + ++ + + +++I+NK D Sbjct: 239 RIKEEIERYSAVRTMAAIERCDVCTLILDATEPISEQDERIIGYAHENNKAILVIVNKWD 298 Query: 142 CV-KPERLLEQ 151 + K ++ +E Sbjct: 299 LIEKDDKTMEN 309 >gi|229496106|ref|ZP_04389828.1| tRNA modification GTPase TrmE [Porphyromonas endodontalis ATCC 35406] gi|229317002|gb|EEN82913.1| tRNA modification GTPase TrmE [Porphyromonas endodontalis ATCC 35406] Length = 468 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 6/154 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL+N +G +IV+ TTR + + K +DT G+ + + Sbjct: 224 IAILGQPNTGKSTLLNALLGEDRAIVSDIEGTTRDSIEEKLVIKGVLFRIIDTAGLRHTQ 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILILNKI 140 D +L I+ + + A + +++D+ R K ++ L+++A +RL+L LNKI Sbjct: 284 DPIEQLGIKRALQKAEDAALSLILLDALRVQKEGVNSSLEQLASLPLSPENRLVL-LNKI 342 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 D + E A + F + ++SA +G G Sbjct: 343 DLLTEEEREALAAEVSA-AFRQTPVLLSAKEGRG 375 >gi|212211699|ref|YP_002302635.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuG_Q212] gi|212010109|gb|ACJ17490.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii CbuG_Q212] Length = 473 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 11/130 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G N GKS+L+N G + +IVT TTR I+R + I +DT G Sbjct: 235 REGITVVIAGEPNVGKSSLLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAG 294 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR------L 133 + +D K +R + ++ AD++ L++D+ + + D K IA+ S Sbjct: 295 LRLTEDVVEKEGVRRTQKAVQQADLLLLMIDASKPTE----DFKKIIAQWFSENDNKIPT 350 Query: 134 ILILNKIDCV 143 +++ NKID + Sbjct: 351 LIVENKIDLI 360 >gi|29655207|ref|NP_820899.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 493] gi|209363710|ref|YP_001423624.2| tRNA modification GTPase TrmE [Coxiella burnetii Dugway 5J108-111] gi|29542479|gb|AAO91413.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii RSA 493] gi|207081643|gb|ABS78334.2| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii Dugway 5J108-111] Length = 473 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 11/130 (8%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V + G N GKS+L+N G + +IVT TTR I+R + I +DT G Sbjct: 235 REGITVVIAGEPNVGKSSLLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAG 294 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR------L 133 + +D K +R + ++ AD++ L++D+ + + D K IA+ S Sbjct: 295 LRLTEDVVEKEGVRRTQKAVQQADLLLLMIDASKPTE----DFKKIIAQWFSENDNKIPT 350 Query: 134 ILILNKIDCV 143 +++ NKID + Sbjct: 351 LIVENKIDLI 360 >gi|299783191|gb|ADJ41189.1| GTP-binding protein engA [Lactobacillus fermentum CECT 5716] Length = 370 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 6/164 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G +++IV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + I+ AD++ +VV+ + + + + +I RS++ ++L +NK+D Sbjct: 65 DQPLLTQIRQQAEIAIEEADVIIMVVNVENGV-TDADEQVAQILYRSNKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 PER L+ + + + + + VS+ G G D+L+ + Sbjct: 123 -NPERRLDVYDFYQ--LGLGEPYPVSSVHGVGLGDMLDAVIENF 163 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 11/129 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDTPGIFNAK 84 + +G N GKS+LVN +G IV+ TTR + + K+ + +DT GI Sbjct: 178 SFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y + + S I +D+V +V+++ REL +I E + +I+++N Sbjct: 238 KLYENTERYALMRSMRAIDDSDVVLVVLNAEEGIRELDKHIAGYAHEAGR---AVIIVVN 294 Query: 139 KIDCVKPER 147 K D + P+R Sbjct: 295 KWDTI-PDR 302 >gi|30248179|ref|NP_840249.1| GTP-binding protein EngA [Nitrosomonas europaea ATCC 19718] gi|37999533|sp|Q82XU6|DER_NITEU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|30180064|emb|CAD84064.1| GTP-binding protein (HSR1-related):AAA ATPase superfamily [Nitrosomonas europaea ATCC 19718] Length = 467 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 6/162 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G N GKSTL+N +G + I + TTR + + +DT G+ + Sbjct: 180 VIAIAGRPNVGKSTLINTLLGEERVIAFDQPGTTRDSIYVDFEYGQRSYTLIDTAGLRRS 239 Query: 84 K---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ K + + +I+ A++V LV+D+H E+ + I + L++ +NK Sbjct: 240 GKVWETVEKFSVVKTLQSIEAANVVILVLDAHHEISDQDAHIAGFILETGRSLVVAINKW 299 Query: 141 DCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 D + +R + + E KL F+ +SA G+G ++ Sbjct: 300 DGLDDYQREIIKREFERKLGFLSFANLHYISALYGNGVKGLM 341 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + LVG N GKSTL NR ++ +IV TR G + +DT G Sbjct: 4 TLVLVGRPNVGKSTLFNRLTRSRDAIVADIPGLTRDRHYGHGRLGLKPYLVVDTGGFEPV 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K M + + + ADIV +VD + L + +++ K ++IL++NK + Sbjct: 64 VKSGILHAMAKQTLQAVDEADIVLFIVDGRQGLAAQDKIIAEQLRKTGQKIILVVNKTEG 123 Query: 143 V 143 + Sbjct: 124 M 124 >gi|240850696|ref|YP_002972096.1| GTP-binding protein HflX [Bartonella grahamii as4aup] gi|240267819|gb|ACS51407.1| GTP-binding protein HflX [Bartonella grahamii as4aup] Length = 447 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 9/163 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TN GKSTL NR GA V T +R +V I+ DT G + Sbjct: 219 VVALVGYTNTGKSTLFNRLSGADVLAKNMLFATLDPTLRKVVLPHGKTILLSDTVGFISN 278 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIAKRS------SRLILI 136 + R + + AD++ V D S + + + D+L+ ++ +I + Sbjct: 279 LPTNLIAAFRATLEEVVEADLILHVRDMSDLDHRAHAQDVLEVLSSLDIDIDDMEHIIEV 338 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NKID + E+ L + + K + MVSA KG G D +L Sbjct: 339 WNKIDMLD-EQALNVLQTSAK-TRLNPALMVSALKGDGLDQLL 379 >gi|227515173|ref|ZP_03945222.1| GTP-binding protein EngA [Lactobacillus fermentum ATCC 14931] gi|227086505|gb|EEI21817.1| GTP-binding protein EngA [Lactobacillus fermentum ATCC 14931] Length = 437 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G +++IV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + I+ AD++ +VV+ + + + + +I RS++ ++L +NK+D Sbjct: 65 DQPLLTQIRQQAEIAIEEADVIIMVVNVENGV-TDADEQVAQILYRSNKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PER L+ + + + + + VS+ G G D+L+ Sbjct: 123 -NPERRLDVYDFYQ--LGLGEPYPVSSVHGVGLGDMLD 157 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 12/142 (8%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-Q 71 KD ++N R + +G N GKS+LVN +G IV+ TTR + + K+ + Sbjct: 166 KDAEEENDRI-RFSFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGRE 224 Query: 72 IVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKE 125 +DT GI Y + + S I +D+V +V+++ REL +I E Sbjct: 225 FTMVDTAGIKKKGKLYENTERYALMRSMRAIDDSDVVLVVLNAEEGIRELDKHIAGYAHE 284 Query: 126 IAKRSSRLILILNKIDCVKPER 147 + +I+++NK D + P+R Sbjct: 285 AGR---AVIIVVNKWDTI-PDR 302 >gi|225351437|ref|ZP_03742460.1| hypothetical protein BIFPSEUDO_03032 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157781|gb|EEG71064.1| hypothetical protein BIFPSEUDO_03032 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 496 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 11/169 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L NR G+ + T + VR ++ Q ++DT G Sbjct: 277 TVAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRQYAYVDTVGFVRR 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEI-AKRSSRLILILN 138 + + + + AD++ VVD SH + I D+L +I + I++ N Sbjct: 337 LPTQLIEAFKSTLEEVSEADLIVHVVDGSHPDPFSQIDAVDDVLSDIDGVETIPTIIVFN 396 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K D +++A + + ++VSA G G D++ + S LP Sbjct: 397 KADR------MDEATRERIEALMPEAYIVSAFSGEGVDELRMQVESMLP 439 >gi|84684892|ref|ZP_01012792.1| GTP-binding protein HflX [Maritimibacter alkaliphilus HTCC2654] gi|84667227|gb|EAQ13697.1| GTP-binding protein HflX [Rhodobacterales bacterium HTCC2654] Length = 427 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 14/171 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA+V T +RG+ ++ DT G + Sbjct: 206 VVALVGYTNAGKSTLFNRMTGAEVMAKDMLFATLDPTMRGVDLPGGRTVILSDTVGFISD 265 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEI----AKRSSRLILILN 138 + R + + AD++ V D +H E + D+L + LI + N Sbjct: 266 LPTQLVAAFRATLEEVLGADLILHVRDIAHDETQEQAEDVLAILEDLGVDEDVPLIEVWN 325 Query: 139 KIDCVKPER---LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID + + L QA+ +++V + SA G G D + + + L Sbjct: 326 KIDKLDDQTRAAYLTQADRTDEVVAM------SAWTGEGVDALYPAIDAAL 370 >gi|319784770|ref|YP_004144246.1| ribosome-associated GTPase EngA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170658|gb|ADV14196.1| ribosome-associated GTPase EngA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 477 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 VA++G N GKSTL NR VG K+++V TR R + + K + F +DT G + Sbjct: 5 VAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRD--RRVHAAKLYDLHFDVIDTAGFED 62 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A S +R I+ AD++ +D+ L + + + K ++L+ NK + Sbjct: 63 AGASTLPGRMRAQTEIAIREADLIFFTIDAKSGLLPDDRTFAEIVRKSGKPVVLVANKAE 122 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + +LE E+ + + VSA G G D+ + + L Sbjct: 123 AKGAQGGMLEAWELG-----LGEPIPVSAEHGQGMPDLRDAVIGAL 163 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 14/179 (7%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+++ +A+VG NAGKSTL+N +G + + + TR + ++ DT Sbjct: 201 DDTKPMRIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWHGRRLKLFDT 260 Query: 78 PGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ + KL ++ I+ A+IV +V+D+ + + I DL I + Sbjct: 261 AGMRRKARIHEKLEVMSVQDGLRAIRFAEIVIIVLDATIPFEKQDLQIADL---IIREGR 317 Query: 132 RLILILNKIDCVK-PERLL-EQAEIANKLVFIEKTFM---VSATKGHGCDDVLNYLCST 185 ++ NK D + P+ LL E E +L+ + VS G G D +++ + T Sbjct: 318 APVIAFNKWDLIDHPQELLAELREKTERLLPQARGLQAVPVSGETGRGLDKLMDAVIRT 376 >gi|282848929|ref|ZP_06258319.1| ribosome-associated GTPase EngA [Veillonella parvula ATCC 17745] gi|282581434|gb|EFB86827.1| ribosome-associated GTPase EngA [Veillonella parvula ATCC 17745] Length = 444 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N V ++SIV TR + + +DT GI Sbjct: 5 LVAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFI 64 Query: 84 KDSYHKL--MIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 ++ H + M+RL I+ AD++ VVD + + V + + I + S + ++L++NK Sbjct: 65 TENSHVIPKMMRLQAELAIEEADVILFVVDGKQGI-VPADEEVANILRASGKPVVLVVNK 123 Query: 140 IDCVKPE 146 ID V E Sbjct: 124 IDSVNQE 130 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+ + VA++G N GKS+L N +G IV+ TTR + + + + V +DT Sbjct: 174 DDEDTIHVAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHENQKFVLIDT 233 Query: 78 PGIFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ +++ + I S ++ ADIV LV+D+ + + + ++ Sbjct: 234 AGMRRKSKIEEAVERYSIVRSLRSVDRADIVVLVLDAQDGVTEQDKKIAGYAYEAGKGVV 293 Query: 135 LILNKIDCVK 144 +++NK D V+ Sbjct: 294 IVVNKWDLVE 303 >gi|302546520|ref|ZP_07298862.1| ribosome-associated GTPase EngA [Streptomyces hygroscopicus ATCC 53653] gi|302464138|gb|EFL27231.1| ribosome-associated GTPase EngA [Streptomyces himastatinicus ATCC 53653] Length = 487 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 51 VLAVVGRPNVGKSTLVNRVLGRREAVVEDKPGVTRDRVTYEAEWSGRRFKVVDTGGWEQD 110 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ ++K + + ++L NK+D Sbjct: 111 VLGIDASVAAQAEFAIEAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKVDG- 169 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P + A + + + + + VSA G G D+L+ + LP AP Sbjct: 170 -PSGEADAAMLWS--LGLGEPHPVSALHGRGTGDMLDAVLEALPEAP 213 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +AL+G N GKS+L+N+ G + +V TTR V ++ F+DT GI Sbjct: 227 IALIGRPNVGKSSLLNKVAGEERVVVNEVAGTTRDPVDELIELGGITWKFVDTAGIRRRV 286 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + A I ++D+ + V ++ + L++ N Sbjct: 287 HLQEGADYYASLRTAAAVEKAEVAVI---LIDTSEPISVQDQRIITMAVEAGRALVIAYN 343 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 344 KWDTLDEER 352 >gi|291297034|ref|YP_003508432.1| small GTP-binding protein [Meiothermus ruber DSM 1279] gi|290471993|gb|ADD29412.1| small GTP-binding protein [Meiothermus ruber DSM 1279] Length = 453 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 23/179 (12%) Query: 25 VALVGATNAGKSTLVNRFV------------GAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 V +VG N GKS+L N+ + G++ ++V TR + G+V ++ + Sbjct: 4 VVIVGRPNVGKSSLFNKLLGLRAAPEKAAKAGSQFAVVADVPGVTRDLKEGVVESEQGRF 63 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKR 129 +DT G+++ D + K + + I AD+V VD ++ + + D L+ ++ Sbjct: 64 KLVDTGGLWSG-DVWEKKIKQKVERAIADADLVLFAVDGRSDIVTADLEVADFLR---RQ 119 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 ++L+ KID K E L L F E SA G D++L + + LP+ Sbjct: 120 GKPVLLVATKIDDPKHEAYLGS---FYALGFGEPV-PTSAAHSRGFDELLERIWALLPI 174 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG NAGKS+L+N +G + IV+ TTR + S+ + +DT GI Sbjct: 188 LAIVGRPNAGKSSLLNAILGEERVIVSEIPGTTRDSIDVEFDYGGSRFLLVDTAGIRKRP 247 Query: 85 DS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ + I + I+ AD+V LV+D +EL + L E + +IL + K D + Sbjct: 248 ETGVEEQAIVRAHQAIRDADVVLLVIDP-KELGDHELKLANEALEAGKPVILTITKWDLI 306 Query: 144 --KPERLLEQAEIANKLVFIE 162 K E +A++A KL ++ Sbjct: 307 ETKEEARRVRADLALKLSHVQ 327 >gi|161760545|ref|NP_907463.2| tRNA modification GTPase TrmE [Wolinella succinogenes DSM 1740] gi|205829217|sp|Q7M901|MNME_WOLSU RecName: Full=tRNA modification GTPase mnmE Length = 456 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N + + +IV+ TTR + + + +DT GI A+ Sbjct: 225 LAIIGRPNVGKSSLLNALLLWERAIVSDIPGTTRDTIEESLHLGNHWVRIVDTAGIREAQ 284 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILIL-NKI 140 D+ K+ I + +K +D+V + DS + L I +LL+ A + +R IL+L NK Sbjct: 285 DAIEKIGIERTLLALKESDMVLALFDSSQSLSPEDEQIKELLR--AHQENRRILVLFNKS 342 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D R L+ +E+ + +SA +G G +++L+ L S L Sbjct: 343 DL---SRELQDSELESY-----PHRYISAKEG-GVEELLSLLASWL 379 >gi|89898615|ref|YP_515725.1| GTPase ObgE [Chlamydophila felis Fe/C-56] gi|123482893|sp|Q253F8|OBG_CHLFF RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|89331987|dbj|BAE81580.1| GTP-binding protein, GTP1 [Chlamydophila felis Fe/C-56] Length = 335 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 18/175 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI----VFLDTPGI 80 + LVG NAGKSTL N +V + + T + ++ G+V +E + D PGI Sbjct: 161 IGLVGFPNAGKSTLFNTLARTEVRVGAYPFTTLQPVL-GLVPCQEKLYQKPWIIADIPGI 219 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD--------SHRELKVNIHDLL--KEIAKRS 130 L + I+ ++ V+D +L++ I +LL KE Sbjct: 220 IEGAHQNRGLGLDF-LKHIERTRLLLFVIDICGCERSSPEEDLRILIDELLHYKENLADK 278 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 SR+I LNKID + P+ E+ E +L EK ++S G G D+LN L + Sbjct: 279 SRII-ALNKIDDLLPDERQERLESFQRLFPSEKFVLLSGLTGEGV-DLLNSLFTN 331 >gi|317051076|ref|YP_004112192.1| ribosome-associated GTPase EngA [Desulfurispirillum indicum S5] gi|316946160|gb|ADU65636.1| ribosome-associated GTPase EngA [Desulfurispirillum indicum S5] Length = 457 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 6/158 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 V ++G N GKSTL NR +++IV TR V ++ + +DT G + Sbjct: 7 VCIIGRPNVGKSTLFNRIAKKRIAIVEDIPGVTRDRNYHDVEWEDKEFTIVDTGGFESET 66 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K S M+ + AD V ++D + ++ + + + + +NKID Sbjct: 67 GKGSLEASMVEQTGIAAAEADRVIFLLDGQTGPIADDFAIMDMLRRHEKPVYIAVNKIDA 126 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 E++L + + +++ F VSA G G DD+L+ Sbjct: 127 PSHEKIL----LDFYQLGVDEVFPVSAAHGRGVDDLLD 160 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 4/128 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+LVN+ G + + TTR + V + + LDT GI Sbjct: 187 VAIVGRPNVGKSSLVNKICGENRVVASEVPGTTRDTIHTPVRREGRDFILLDTAGIRRKS 246 Query: 85 DSYHKLMIRL----SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +Y + + R S + I+ A +V L++D+ + + + +I+ +NK Sbjct: 247 KAYSENLERYSVFRSITAIEEAHVVILMLDATEGITDQDLKVASYAWEAGKPIIIAVNKW 306 Query: 141 DCVKPERL 148 D V E + Sbjct: 307 DLVAKETM 314 >gi|254476302|ref|ZP_05089688.1| tRNA modification GTPase TrmE [Ruegeria sp. R11] gi|214030545|gb|EEB71380.1| tRNA modification GTPase TrmE [Ruegeria sp. R11] Length = 428 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 1/102 (0%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG VA+VGA N GKSTL+N G + +I + TTR ++ + + LDT G Sbjct: 211 RSGFEVAIVGAPNVGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAG 270 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 + D + I L+ + AD+ + ++ + I D Sbjct: 271 LRETDDHVEGIGIELAKKRAETADLRVFLAGDRNDIDLPIRD 312 >gi|161760696|ref|YP_496424.2| GTPase ObgE [Novosphingobium aromaticivorans DSM 12444] gi|261277915|sp|Q2G983|OBG_NOVAD RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg Length = 352 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 24/179 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 LVG NAGKST +N+ K + + T R + G+V + + V D PG+ Sbjct: 162 AGLVGLPNAGKSTFINQITNTKAKVGDYAFTTLRPQL-GVVRHRNREFVLADIPGLIEGA 220 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV--NIHDLLKEIAKRSSRL-----ILIL 137 + R I+ ++ ++D H ++ +H + E+ + L ++ L Sbjct: 221 ADGAGIGDRF-LGHIERCRVLIHLIDIHSDVDPVEAMHIVEGELEAYGAGLDEKPRLVAL 279 Query: 138 NKIDCVKPE-------RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 NKID V E LLE ++ F +S G G D +L+ + LP A Sbjct: 280 NKIDLVDKELVKAFQDELLEGG--------ADRVFPISGATGKGMDALLDAVLEYLPAA 330 >gi|78776593|ref|YP_392908.1| GTP-binding protein EngA [Sulfurimonas denitrificans DSM 1251] gi|123550784|sp|Q30TK8|DER_SULDN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78497133|gb|ABB43673.1| GTPase family protein [Sulfurimonas denitrificans DSM 1251] Length = 494 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 7/178 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L NR + + +I + TTR + R V + + LDT G+ Sbjct: 4 IAIIGRPNVGKSSLFNRLMKKRDAITSDVAGTTRDVKRRHVVIINKEALLLDTGGLDQGC 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + K+ + S K ADI+ +VD + L E+ + L++NKID K Sbjct: 64 ELFDKIKEK-SLEAAKKADIILYMVDGKSIPEDADKKLFYELQTLGKEVALVVNKIDNDK 122 Query: 145 -PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDL 201 + L + E + F +S + + +L ++ LP + D+ D+ Sbjct: 123 LKDNLWDFYEFGTDAI-----FGISVSHNRSVNALLEWIYDRLPEEDIIKDEDEEDDV 175 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 10/137 (7%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 K+F + ++ ++++G TN GKS+L+N +G + S+V+ TT + + K+ Q+ Sbjct: 225 KEFDETDANHIKISIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQL 284 Query: 73 VFLDTPGIFNAKD--SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK-- 128 F+DT G+ K + + ++++++ +V+D+ DL ++IA Sbjct: 285 TFVDTAGLRRRGKIVGIEKFALMRTKEMLENSNMALVVLDASEPF----LDLDEKIAGLV 340 Query: 129 RSSRL--ILILNKIDCV 143 S+RL I++LNK D Sbjct: 341 DSNRLACIIVLNKWDIA 357 >gi|205422256|sp|Q07UP2|MNME_RHOP5 RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 18/168 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL+N+ +V+IV+ TTR ++ + + +DT GI ++ Sbjct: 220 VVAIVGPPNVGKSTLMNQLARREVAIVSPHAGTTRDVIEVHLDLDGYPVTVIDTAGIRDS 279 Query: 84 KDSYHKLMIRLSWSTIKHADIVC-LVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + +R + + AD+V L+ D I + + + L+ NK+D Sbjct: 280 DDPVEQEGVRRAQARAAEADLVLWLLADDQVAAPAAI--------ESDAPVWLVRNKVDL 331 Query: 143 ------VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 VKP + LE A + + + +F +SA +G G D++ L Sbjct: 332 AGAATGVKPAKNLE-ANLGQNVP--QPSFAISAKRGDGIADLVGALGG 376 >gi|14590256|ref|NP_142322.1| hypothetical protein PH0344 [Pyrococcus horikoshii OT3] gi|3256735|dbj|BAA29418.1| 186aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 186 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 24/140 (17%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE------------KESQI 72 VA++GA N GKSTL+N +G K S V+ TT+ I++ + ++ Sbjct: 4 VAIIGAENVGKSTLMNALLGGKFSEVSETPGTTKGIIKRAFGKIKLPKTMKNPFGGADEL 63 Query: 73 VFLDTPGIFNA-KDSYHKLMIRLSW----STIKHADIVCLVVDS----HRELKVNIHDLL 123 V +DT G+F+ K+ K++ + I +AD++ ++D+ HR ++ +H +L Sbjct: 64 VLIDTAGLFDPEKEIRGKVLSEEKFKELIKEIVNADVIIHMIDATKGLHRGME-KLHYML 122 Query: 124 KEIAKRSSRLILILNKIDCV 143 K + +I+++NKID V Sbjct: 123 K--FRYEKPIIVVINKIDLV 140 >gi|110834717|ref|YP_693576.1| GTP-binding protein [Alcanivorax borkumensis SK2] gi|123149362|sp|Q0VNE4|DER_ALCBS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110647828|emb|CAL17304.1| GTP-binding protein, putative [Alcanivorax borkumensis SK2] Length = 471 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 51/128 (39%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G +DT GI Sbjct: 6 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGDGQLGGYLYTVVDTGGIGEN 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M S + AD+V +VD L + E+ K LI+NK D V Sbjct: 66 DDGIDVPMTSQSLQAVGEADVVLFMVDGRAGLTAADEQIASELRKLPKPTYLIVNKTDGV 125 Query: 144 KPERLLEQ 151 + + + Sbjct: 126 DADSAMSE 133 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 10/177 (5%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 EH+ + S VA++G N GKSTL+NR +G + +V TTR + Sbjct: 173 GEHRTSKKPGEDSIRVAVLGRPNVGKSTLINRMLGEERVVVFDHAGTTRDSIEVPFERMG 232 Query: 70 SQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 +DT G+ + K + + ++ A +V +V+D+ + LL Sbjct: 233 RAYTLIDTAGVRRRGKVFEMVEKFSVIKALQAMEAAQVVVVVIDAREGITDQDLHLLGYA 292 Query: 127 AKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 L++ +NK D ++ ER+ + + +L F K +SA G G D+ Sbjct: 293 LDSGRALMIAVNKWDGLEADHKERV--RVNLGRRLEFAPWVKIKFISALHGTGVGDL 347 >gi|49474829|ref|YP_032871.1| tRNA modification GTPase TrmE [Bartonella quintana str. Toulouse] gi|81827572|sp|Q6FYB8|MNME_BARQU RecName: Full=tRNA modification GTPase mnmE gi|49240333|emb|CAF26815.1| Thiophene and furan oxidizer [Bartonella quintana str. Toulouse] Length = 436 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 56/111 (50%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + GA N+GKS+++NR G V+IV + TTR + + + DT G+ + Sbjct: 217 IVIAGAPNSGKSSIMNRLAGKSVAIVMEEAGTTRDALEIRLVLGGLPVFLTDTAGLRETE 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 + +L I ++ I AD+V LV D +VN+ + EI ++L L Sbjct: 277 NKIEQLGIEIAKQHIVDADLVILVYDMGNPKEVNLPETSAEIWHVGNKLDL 327 >gi|323486971|ref|ZP_08092286.1| hypothetical protein HMPREF9474_04037 [Clostridium symbiosum WAL-14163] gi|323692018|ref|ZP_08106266.1| GTP-binding protein engA [Clostridium symbiosum WAL-14673] gi|323399743|gb|EGA92126.1| hypothetical protein HMPREF9474_04037 [Clostridium symbiosum WAL-14163] gi|323503941|gb|EGB19755.1| GTP-binding protein engA [Clostridium symbiosum WAL-14673] Length = 444 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+++N+ +G IV+ TTR V + ++ VF+DT G+ Sbjct: 182 IAIVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAVDTEIIHNGTEYVFIDTAGLRRKS 241 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ AD+V +V+D+ + + +R +I+++NK D Sbjct: 242 KIKEELERYSIIRTVTAVERADVVLVVIDAVEGVTEQDAKIAGIAHERGKGIIIVVNKWD 301 Query: 142 CVK 144 ++ Sbjct: 302 AIE 304 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 N + VA+VG N GKSTL N G +SIV TR + + + +DT Sbjct: 2 NKKKPVVAVVGRPNVGKSTLFNVLAGDMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTG 61 Query: 79 GIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 GI + KD M + I AD++ +VD + L + + + K ++L + Sbjct: 62 GIEPDTKDVILAQMREQAEIAIATADVIIFIVDVRQGLTDSDSKVADMLRKSKKPVVLAV 121 Query: 138 NKIDC 142 NK+D Sbjct: 122 NKVDS 126 >gi|148377321|ref|YP_001256197.1| tRNA modification GTPase TrmE [Mycoplasma agalactiae PG2] gi|205415799|sp|A5IXJ1|MNME_MYCAP RecName: Full=tRNA modification GTPase mnmE gi|148291367|emb|CAL58750.1| TRNA modification GTPase (TrmE) [Mycoplasma agalactiae PG2] Length = 445 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+++N + +IVT TTR IV + K F+DT GI + K Sbjct: 221 IAILGKPNVGKSSILNAILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFIDTAGIRDTK 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 + K+ I S+ I+ AD+V + D Sbjct: 281 EKIEKIGIDKSFEQIEKADVVLHIYD 306 >gi|254421034|ref|ZP_05034758.1| GTP-binding proten HflX [Brevundimonas sp. BAL3] gi|196187211|gb|EDX82187.1| GTP-binding proten HflX [Brevundimonas sp. BAL3] Length = 437 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 44/228 (19%) Query: 24 CVALVGATNAGKSTLVNRFVGAKV---SIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +ALVG TNAGKSTL NR G++V ++ + TT+ +R + + IV DT G Sbjct: 207 TIALVGYTNAGKSTLFNRLTGSEVFAKDLLFATLDTTQRTIR--LPQGRPAIVA-DTVGF 263 Query: 81 FNAKDSYHKLM--IRLSWSTIKHADIVCLV-----VDSHRELKVNIHDLLKEIAK---RS 130 + D H+L+ R + + AD++ V DS + K ++ +LK+I ++ Sbjct: 264 IS--DLPHELVESFRATLEEVGEADLILHVRDIASADSDAQAK-DVETVLKQIETPEGKT 320 Query: 131 SRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC---- 183 R++ + NKID + E +L QAE +L + VSA G G + + + Sbjct: 321 RRVLEVWNKIDLLDDEAREAVLGQAE---RLAKTGEAVAVSAWTGEGIEPLRQTIAGLID 377 Query: 184 ----STLPLAP-------WVYSADQISDLPMFHFTAEITREKLFLHLH 220 + L L P W+Y ++ +F T + R + + LH Sbjct: 378 DDPETRLTLEPDQGEALAWLYEHGRV----VFRDTDDAGRTHVTVRLH 421 >gi|54020066|ref|YP_115685.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae 232] gi|81823547|sp|Q601N0|MNME_MYCH2 RecName: Full=tRNA modification GTPase mnmE gi|53987239|gb|AAV27440.1| thiophene and furan oxidation protein [Mycoplasma hyopneumoniae 232] Length = 442 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVGA N+GKS+L+N + +I++ TTR +V G DT GI + Sbjct: 221 LVGAPNSGKSSLLNILINENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEK 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ I S+ +IK AD++ ++D+ + + N+ LK + + I NK D ++ + Sbjct: 281 IEQIGIEKSYESIKKADLILHIIDASEKNRQNLD--LKAKTRPDQIYLKIYNKSDLLENQ 338 >gi|87134848|gb|ABD25590.1| Small GTP-binding protein domain [Novosphingobium aromaticivorans DSM 12444] Length = 378 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 24/179 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 LVG NAGKST +N+ K + + T R + G+V + + V D PG+ Sbjct: 188 AGLVGLPNAGKSTFINQITNTKAKVGDYAFTTLRPQL-GVVRHRNREFVLADIPGLIEGA 246 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV--NIHDLLKEIAKRSSRL-----ILIL 137 + R I+ ++ ++D H ++ +H + E+ + L ++ L Sbjct: 247 ADGAGIGDRF-LGHIERCRVLIHLIDIHSDVDPVEAMHIVEGELEAYGAGLDEKPRLVAL 305 Query: 138 NKIDCVKPE-------RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 NKID V E LLE ++ F +S G G D +L+ + LP A Sbjct: 306 NKIDLVDKELVKAFQDELLEGG--------ADRVFPISGATGKGMDALLDAVLEYLPAA 356 >gi|19114056|ref|NP_593144.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe 972h-] gi|14194952|sp|Q9UTE7|MSS1_SCHPO RecName: Full=tRNA modification GTPase mss1, mitochondrial; Flags: Precursor gi|6433990|emb|CAB60697.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe] Length = 496 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 20/178 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G +NAGKS+L+N ++SIV+ + TTR + +V ++ DT G+ + Sbjct: 242 VAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGLRKGE 301 Query: 85 D--SYHKLMIRLSWSTIKHADIVCLV--VDSH---RELKVN-IHDLLKEIAKRSSRLILI 136 D K+ I ++ + + + + V ++ H LK + I + +K+ ++ + + Sbjct: 302 DVQEIEKIGIEIAKARAEESQLTLFVFPINYHSFSESLKQSEILETIKDCLRQRKPIHFL 361 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH--------GCDDVLNYLCSTL 186 +NK+DCV + + A +++K F++ + H G D L L ST Sbjct: 362 INKVDCVSDYTTMFKPIKA----YLQKNFLIPENRIHAVSCKTKEGLIDFLQALSSTF 415 >gi|71027773|ref|XP_763530.1| hypothetical protein [Theileria parva strain Muguga] gi|68350483|gb|EAN31247.1| GTP-binding protein, putative [Theileria parva] Length = 521 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 14/171 (8%) Query: 30 ATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNAKDSYH 88 + N+GKS+L+N+ +G IV+ TT+ + V+ E ++ F+DT G+ KD Sbjct: 246 SPNSGKSSLINKLIGENRCIVSPDEGTTQDSTKVFVTYGE-KMSFVDTAGMKLLTKDRRS 304 Query: 89 KLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV-KPER 147 L + S +I+ +D+ LV+DS + N + +EI + I++ NK D V K Sbjct: 305 YLSQKSSLKSIRASDVCILVIDSSWGISKNDVKMAEEIKDENKAAIIVCNKWDLVDKTPS 364 Query: 148 LLEQ--AEIANKLVFIE--KTFMVSATKGHGCDDVLNYL-------CSTLP 187 + + + KL +++ + SA G ++ + CS LP Sbjct: 365 IFDNVVGYVREKLYWLDYADVLITSAKSGQKVQNIFESIQKTYKQYCSNLP 415 >gi|323303561|gb|EGA57352.1| Mss1p [Saccharomyces cerevisiae FostersB] Length = 413 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 4/128 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 + L+GA N GKS+LVN +SIV+ TTR + +++ +++ DT GI + Sbjct: 277 LVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIREKS 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRLILILNKI 140 D L I + +D+ +VD K+ D+L ++ ++ R+I+++NK Sbjct: 337 SDKIEMLGIERAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIVVNKS 396 Query: 141 DCVKPERL 148 D V + + Sbjct: 397 DLVSDDEM 404 >gi|290473436|ref|YP_003466303.1| putative GTP-binding protein with nucleoside triP hydrolase domain [Xenorhabdus bovienii SS-2004] gi|289172736|emb|CBJ79507.1| putative GTP-binding protein with nucleoside triP hydrolase domain [Xenorhabdus bovienii SS-2004] Length = 392 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 21/175 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G NAGKST + AK + + T + + + E V D PG+ Sbjct: 162 VGMLGMPNAGKSTFIRSVSAAKPKVADYPFTTLVPSLGVVRMDNEQSFVVADIPGLIEGA 221 Query: 85 DSYHKLMIRLSWSTIKHAD-------IVCLVVDSHRELKVNIHDLLKEIAKRSSRLI--- 134 L IR +KH + ++ L + N ++KE+ K S +L Sbjct: 222 SEGVGLGIRF----LKHLERCRVLLHLIDLCPLDESDPVENARIIIKELHKYSEKLAEKP 277 Query: 135 --LILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHG----CDDVLNYL 182 L+ NK+D PE ++A+ IA++L + +M+SA G C D++ ++ Sbjct: 278 RWLVFNKVDLTDPEEAKQRAKAIADELGWEGDYYMISAVNRQGVKELCWDIMEFM 332 >gi|255019370|ref|ZP_05291481.1| GTP-binding protein Obg [Acidithiobacillus caldus ATCC 51756] gi|254971190|gb|EET28641.1| GTP-binding protein Obg [Acidithiobacillus caldus ATCC 51756] Length = 373 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 18/170 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G NAGKSTL+ A+ + + T R + + E+ V D PG+ Sbjct: 162 VGLLGFPNAGKSTLIRAVSAARPKVADYPFTTLRPHLGVVRLALEASFVIADIPGLIPGA 221 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVV--------DSHRELKVNIHDLLKEIAKRSSRLI-- 134 L R +KH L++ D + + H+L +E+ + S L Sbjct: 222 AEGAGLGTRF----LKHLSRTRLLLHVLDMAPPDPDTDPVMQFHELEEELRRYSPALAQR 277 Query: 135 ---LILNKIDCVKPERLLEQ-AEIANKLVFIEKTFMVSATKGHGCDDVLN 180 L++NK D ++P Q I +L + F++SA G GC +++ Sbjct: 278 PRWLVVNKADLMEPAAAEAQFRSILRRLDWQGPAFLISAATGFGCAELVQ 327 >gi|124024442|ref|YP_001018749.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9303] gi|166234806|sp|A2CDC4|MNME_PROM3 RecName: Full=tRNA modification GTPase mnmE gi|123964728|gb|ABM79484.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9303] Length = 465 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 10/182 (5%) Query: 10 NEHKDFVQDNSRSGC------VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG 63 E + V+D R VALVG N GKS+L+NR + +IVT TTR ++ Sbjct: 209 RELEQLVEDAKRGDVLRQGLQVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDVLES 268 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 + + I +DT GI KD+ +L I S + AD+ LV D + LL Sbjct: 269 EIVLEGVPITLVDTAGIRATKDALEQLGIDRSHQALAAADVAVLVFDLSLGWTADDAALL 328 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 +I RL L+ NK D ++P + A ++N++ M+SA G G + ++ + Sbjct: 329 AQIPDDLPRL-LVGNKAD-LQPASM--TASLSNEVDGKTVDVMLSALTGQGEEALIEAVL 384 Query: 184 ST 185 T Sbjct: 385 KT 386 >gi|120601203|ref|YP_965603.1| small GTP-binding protein [Desulfovibrio vulgaris DP4] gi|120561432|gb|ABM27176.1| GTP-binding protein HflX [Desulfovibrio vulgaris DP4] Length = 547 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +LVG TNAGKSTL+N A+V T R + +E +++ DT G Sbjct: 333 ASLVGYTNAGKSTLLNALTNAEVLAENKLFATLDPTTRRLRFPEERELILADTVGFIRNL 392 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVN---IHDLLKEIAKRSSRLILILNKI 140 R + ++ AD++ V D+ H EL + D+L E+ +L+LNK Sbjct: 393 PKELVEAFRATLEELEAADLLIHVADAGHPELDRQLRAVEDILVEMEMHDIPRLLVLNKW 452 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 D V PE L E +A+ + V+A + G D + + + S Sbjct: 453 DTV-PEELRETLLLAHP-----EAIPVAALQREGLDALAHGIAS 490 >gi|42560947|ref|NP_975398.1| GTP-binding protein EngA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81829393|sp|Q6MTJ6|DER_MYCMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|42492444|emb|CAE77040.1| conserved GTPase of unknown function [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321230|gb|ADK69873.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 435 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 4/163 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA++G N GKS+L NR + K SIV +K TR + + + +DT GI Sbjct: 5 IVAIIGRPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILVDTGGISID 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + I+ AD++ VVD L + + K + K +IL +NK D Sbjct: 65 QQLFSNEIQIQTQIAIEQADVIIFVVDFLNRLDKDDKMIAKILHKSKKPVILAINKYD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ++ ++ + + +S+T G G D+L+ + S + Sbjct: 123 --KKTIDDHNYEFMNLGFSDLYFISSTHGIGIGDLLDKVISYI 163 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S +A++G N GKS+LVN V IV+ TT V S +++ +DT GI Sbjct: 174 STKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKNKYTVIDTAGIR 233 Query: 82 NAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + K S S I ++DIV L++D+ + + ++ I +I+++N Sbjct: 234 KKSKLGQTVEKYSYLRSLSAITNSDIVLLMIDATKPITDQDTNIGGLIYDEKKPVIIVVN 293 Query: 139 KIDCV--KPERLLEQAE 153 K D V K E++L++ E Sbjct: 294 KWDLVKNKQEQILKKEE 310 >gi|15242912|ref|NP_200604.1| GTP-binding family protein [Arabidopsis thaliana] gi|9758365|dbj|BAB08866.1| GTP binding protein-like [Arabidopsis thaliana] gi|332009595|gb|AED96978.1| GTP-binding protein, HflX [Arabidopsis thaliana] Length = 540 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 13/162 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V+LVG TNAGKSTL+N+ GA V T R + + + + DT G Sbjct: 312 VSLVGYTNAGKSTLLNQLTGANVLAENRLFATLDPTTRRVQMQNGKEFLLTDTVGFIQKL 371 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILILNKI 140 + R + I + ++ VVD L + ++ E+ S +++ NK+ Sbjct: 372 PTTLVAAFRATLEEIAESSLLVHVVDISHPLAEQQIEAVEKVMSELDVSSIPKLVVWNKV 431 Query: 141 DCV-KPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 D V P+++ LE E + T +SA G G DD N Sbjct: 432 DRVDDPQKVKLEAEETGD-------TICISALTGEGLDDFCN 466 >gi|301633488|gb|ADK87042.1| tRNA modification GTPase TrmE [Mycoplasma pneumoniae FH] Length = 442 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G TN GKS+L+N + +IV+ +TR IV G + + LDT GI + Sbjct: 220 IAIIGNTNVGKSSLLNALLDQDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQ 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR-ELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K I+ ++ IK A++V ++D+ + E I LK++ K L+ NK D V Sbjct: 280 SALEKAGIQKTFGAIKTANLVIYLLDARQPEPDPKIIARLKKLKK---DFFLVHNKADLV 336 Query: 144 K 144 + Sbjct: 337 Q 337 >gi|296112016|ref|YP_003622398.1| GTP-binding protein EngA [Leuconostoc kimchii IMSNU 11154] gi|295833548|gb|ADG41429.1| GTP-binding protein EngA [Leuconostoc kimchii IMSNU 11154] Length = 437 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G +++IV + TR + + +DT GI Sbjct: 5 IVAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + I AD++ +V + + K + K + ++L +NK+D Sbjct: 65 DEPFLAEIRAQVELAIDEADVIVMVASGREGVTSADEVVAKMLYKTAKPIVLAINKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + Q + + + + VS G G D+L+ + P Sbjct: 123 NPE--MRQDIYDFYSLGLGEPYPVSGAHGLGLGDMLDAVVKNFP 164 Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 15/163 (9%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +++G N GKS++VN +G IV+ TTR +I V+ + + + +DT G+ Sbjct: 179 SIIGRPNVGKSSIVNAMLGEDRVIVSSIEGTTRDAIDTRFVTPEGDEFIMVDTAGMRKRG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +++++ +V+D+ RE ++ E + +I+++N Sbjct: 239 KVYENTEKYSVMRALKAIDNSNVILMVIDAEAGIREQDKHVAGFAHEAGR---AMIIVVN 295 Query: 139 KIDCV-KPERLLEQAE--IANKLVFIEKT--FMVSATKGHGCD 176 K D + K +R ++ E I + F++ VSA G D Sbjct: 296 KWDAIEKDDRTMKDFENLIRAEFKFLDYAPIIFVSAKTGQRLD 338 >gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] gi|254547822|gb|ACT56895.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 13/131 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR------SIVRGIVSEKESQIVFLDT 77 +A+VGA N GKSTL NR V K+++V + TR +I+ G++ +DT Sbjct: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN------IVDT 57 Query: 78 PGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 GI + K+ S K M + I A ++ ++DS + H + + K++ +I++ Sbjct: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 Query: 137 LNKIDCVKPER 147 NK+D +R Sbjct: 118 SNKMDTRIAQR 128 Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 8/177 (4%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K V++ S+ +A+VG N GKSTL+NR +G + + TR V + K Sbjct: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 I DT G+ +S + ++ S +++ + +++D+ + ++ + Sbjct: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 Query: 128 KRSSRLILILNKIDCVKPERLLEQ---AEIANKLVFIEKTFM--VSATKGHGCDDVL 179 ++L LNK D V + L Q + L I ++ +S G G DD++ Sbjct: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 >gi|237809127|ref|YP_002893567.1| GTP-binding proten HflX [Tolumonas auensis DSM 9187] gi|237501388|gb|ACQ93981.1| GTP-binding proten HflX [Tolumonas auensis DSM 9187] Length = 429 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL NR +KV T +R I E+ +V DT G Sbjct: 199 VVSLVGYTNAGKSTLFNRMTQSKVYAADQLFATLDPTLRRIELERLGPVVLADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHREL----KVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + AD+ V+D E ++++L EI +L+ Sbjct: 257 RHLPHDLVAAFKATLQETREADLQLHVIDCADERVQDNMAQVNEVLHEIEADEVPQLLVY 316 Query: 138 NKIDCVKPE 146 NK+DC+ PE Sbjct: 317 NKVDCL-PE 324 >gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE [Mycoplasma pneumoniae M129] gi|2495119|sp|P75104|MNME_MYCPN RecName: Full=tRNA modification GTPase mnmE gi|1673806|gb|AAB95794.1| thiophene and furan oxidation protein [Mycoplasma pneumoniae M129] Length = 442 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G TN GKS+L+N + +IV+ +TR IV G + + LDT GI + Sbjct: 220 IAIIGNTNVGKSSLLNALLDQDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQ 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR-ELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K I+ ++ IK A++V ++D+ + E I LK++ K L+ NK D V Sbjct: 280 SALEKAGIQKTFGAIKTANLVIYLLDARQPEPDPKIIARLKKLKK---DFFLVHNKADLV 336 Query: 144 K 144 + Sbjct: 337 Q 337 >gi|67921883|ref|ZP_00515399.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501] gi|67856099|gb|EAM51342.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501] Length = 533 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 24/170 (14%) Query: 16 VQDNSRSG--CVALVGATNAGKSTLVNRFVG-----AKVSIVTHKVQTTRSI-VRGIVSE 67 + DN G V + G +AGK++LVN G + ++ T K+ T S+ ++GI E Sbjct: 122 ITDNLNRGELKVVIFGTGSAGKTSLVNALFGDIVGDVEATMGTTKIGETYSLKLKGISRE 181 Query: 68 KESQIVFLDTPGIFNA--KDSYHKLMIRLSWSTIKHADIVCLVVDSH-RELKVNIHDLLK 124 I+ DTPGI A + S + + R AD++ VVD+ R+ + N ++L Sbjct: 182 ----ILITDTPGILEAGIEGSERETLAR---QLATEADLLLFVVDNDLRQSEYNPLEILV 234 Query: 125 EIAKRSSRLILILNKIDCVKPE---RLLEQAEIANKLVFIEKTFMVSATK 171 + KRS +LI NKID E ++LEQ + K + EK + + K Sbjct: 235 NLGKRS---LLIFNKIDLYTEEEENQILEQLKERVKSIIAEKDVISLSAK 281 >gi|319406398|emb|CBI80039.1| tRNA modification GTPase [Bartonella sp. AR 15-3] Length = 435 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 10/138 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E + D R +A+VGA N GKS+++NR G ++IV+ + TTR + + Sbjct: 205 GERASILNDGIR---IAIVGAPNCGKSSIINRLSGRSIAIVSEEEGTTRDALEVRLILGG 261 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 + F DT G+ ++ L I + I AD+V V D + N ++L + K Sbjct: 262 LPVFFTDTAGLRETENKIELLGIETTKKNIIEADLVIFVYDMN-----NPQEVL--LPKT 314 Query: 130 SSRLILILNKIDCVKPER 147 S+ + + NKID + ++ Sbjct: 315 SAEIWHVGNKIDLCEGDK 332 >gi|269123837|ref|YP_003306414.1| small GTP-binding protein [Streptobacillus moniliformis DSM 12112] gi|268315163|gb|ACZ01537.1| small GTP-binding protein [Streptobacillus moniliformis DSM 12112] Length = 438 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N+ +G ++SIV ++ TR + + + +DT G+ Sbjct: 2 IVAIVGRPNVGKSTLFNKLIGDRLSIVKDEIGVTRDRLYRETEWSGKKFLLVDTGGLEPR 61 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I+ + I AD + +VD + D+ K + K ++I+ +NKID Sbjct: 62 SNDFMMNKIKDQARVAIDEADSIIFLVDGKAGITAIDEDIAKILRKEDKKVIVAVNKID 120 Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--- 80 +A++G NAGKS+ VN+ + + SIV+ TTR + + + +DT GI Sbjct: 174 SIAVLGRPNAGKSSFVNKILNKERSIVSDIAGTTRDSIDSSFNYDGQKYTIIDTAGIRRK 233 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D + + I+ A++ L++D+ L + I + LI+ +NK Sbjct: 234 SKVEDDIEYYSVLRAVKAIQRANVCVLMLDATELLTEQDKRIAGLIFEEKKPLIIAINKW 293 Query: 141 DCVK 144 D ++ Sbjct: 294 DLIE 297 >gi|312796097|ref|YP_004029019.1| GTP-binding protein [Burkholderia rhizoxinica HKI 454] gi|312167872|emb|CBW74875.1| GTP-binding protein [Burkholderia rhizoxinica HKI 454] Length = 444 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V VVD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFVVDGRNGLAPQDKTIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VK 144 +K Sbjct: 124 MK 125 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVN +G + I TTR + + +DT G+ Sbjct: 181 IAIVGRPNVGKSTLVNALLGEERVIAFDLPGTTRDSIYIDFERQGRPYTLIDTAGLRKRG 240 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + +I A++V L++D+ +++ + + ++ L++ +NK D Sbjct: 241 KVFEAVEKFSVVKTLQSIADANVVILLLDARQDISEQDAHIAGFVVEQGRALVIGVNKWD 300 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + R +A++A KL F++ K+ +SA + G +L Sbjct: 301 GLDEHVRERTKADLARKLKFLDFAKSHYISAAEKTGIGALL 341 >gi|289450403|ref|YP_003475559.1| tRNA modification GTPase TrmE [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184950|gb|ADC91375.1| tRNA modification GTPase TrmE [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 484 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G CV L G N+GKSTL+N G +IVT TTR + ++ I +DT G Sbjct: 232 RDGLCVLLAGRPNSGKSTLLNTLSGYDRAIVTDIPGTTRDTIEERINLSGHAITVIDTAG 291 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVC-LVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + D+ +L + S ++ AD++ L + L ++ + LK + + L LI + Sbjct: 292 LRATTDTVERLGVDRSLKAMQKADLILWLFPSDSKSLSEDLAE-LKNFSGNAPILPLI-S 349 Query: 139 KIDCVKPERL 148 K D + P L Sbjct: 350 KADLLNPSDL 359 >gi|288925846|ref|ZP_06419777.1| tRNA modification GTPase TrmE [Prevotella buccae D17] gi|288337501|gb|EFC75856.1| tRNA modification GTPase TrmE [Prevotella buccae D17] Length = 512 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG TN GKSTL+NR + + +IV+ TTR + F+DT GI + Sbjct: 228 VAIVGKTNVGKSTLLNRLLHEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTE 287 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D ++ I ++ I A +V ++D+ Sbjct: 288 DEVERIGIDRTYQKIDQATVVVWMIDT 314 >gi|282864448|ref|ZP_06273504.1| small GTP-binding protein [Streptomyces sp. ACTE] gi|282560935|gb|EFB66481.1| small GTP-binding protein [Streptomyces sp. ACTE] Length = 489 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 53 VLAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQD 112 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ ++K + + ++L NK+D Sbjct: 113 VLGLDASVAAQAEYAIETADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKVDG- 171 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E A + + + VS+ G G D+L+ + LP AP Sbjct: 172 ---QSGEADATALWSLGLGEPHPVSSLHGRGTGDMLDAVLEALPEAP 215 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +AL+G N GKS+L+N+ G +V TTR V ++ F+DT GI Sbjct: 229 IALIGRPNVGKSSLLNKVAGEDRVVVNALAGTTRDPVDELIQLGGITWKFIDTAGIRRRV 288 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + A I ++D+ + V ++ +++ N Sbjct: 289 HLQEGADYYASLRTAAAVEKAEVAVI---LIDASESISVQDQRIITMAVDAGRAIVVAFN 345 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 346 KWDTLDEER 354 >gi|122702429|emb|CAL88405.1| GTPase [Helicobacter pylori] Length = 170 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGATRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|121602914|ref|YP_988349.1| tRNA modification GTPase TrmE [Bartonella bacilliformis KC583] gi|205829116|sp|A1UQU6|MNME_BARBK RecName: Full=tRNA modification GTPase mnmE gi|120615091|gb|ABM45692.1| tRNA modification GTPase TrmE [Bartonella bacilliformis KC583] Length = 435 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 57/109 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N+GKS+++NR G V+IVT + TTR + + ++ +DT G + Sbjct: 217 VVIVGVPNSGKSSIINRLAGRPVAIVTEEEGTTRDALEVRLILGGLPVLVMDTAGFRETE 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 +L I ++ + AD+V LV D K+++ + EI + ++L Sbjct: 277 SKIEQLGIDIAKQHVLDADLVILVDDMKNPQKISLPNTSAEIWRVGNKL 325 >gi|327440787|dbj|BAK17152.1| predicted GTPase [Solibacillus silvestris StLB046] Length = 436 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSADWLAHEFNIIDTGGIEIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + I AD++ + + + + K + K ++L +NKID Sbjct: 65 DEPFLEQIRQQAEIAIDEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAINKIDNP 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++ L F E + +S + G G D+L+ P Sbjct: 125 DMRHMIYD---FYSLGFGE-PWPISGSHGLGLGDLLDECAKHFP 164 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN F+G IV+ TTR + S V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNAFLGQDRVIVSEIQGTTRDAIDSPYSYDGQDYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I+ +D+V +V+++ ++ + + +I+++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVLNADEGIQEQDKKIAGYAHEAGKAVIIVVNKWDA 298 Query: 143 VK 144 ++ Sbjct: 299 IE 300 >gi|145332365|ref|NP_001078139.1| emb2738 (embryo defective 2738); GTP binding [Arabidopsis thaliana] gi|332641626|gb|AEE75147.1| GTP-binding protein [Arabidopsis thaliana] Length = 587 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 38/195 (19%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR VG +IV + TR + G + + V +DT G+ Sbjct: 161 VAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTVS 220 Query: 85 DSYHKLMIRLSWST------------------------------IKHADIVCLVVDSH-- 112 S +M L+ ST + + ++ VVD Sbjct: 221 KSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQAG 280 Query: 113 -RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATK 171 V I D L++ +IL +NK C P + L QA L F +SA Sbjct: 281 PSGADVEIADWLRKYYSHKY-IILAVNK--CESPRKGLMQASEFWSLGFTP--IPISALS 335 Query: 172 GHGCDDVLNYLCSTL 186 G G ++L+ +CS L Sbjct: 336 GTGTGELLDLVCSGL 350 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/170 (21%), Positives = 81/170 (47%), Gaps = 15/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI-- 80 +A++G N GKS+++N V +IV+ TTR + + + + +DT GI Sbjct: 370 AIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRK 429 Query: 81 ----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 ++ + + + ++ I+ +D+V LV+++ + + + I + +++ Sbjct: 430 KSSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVV 489 Query: 137 LNKIDCVKPERLLEQA-----EIANKLVFIEKTFMV--SATKGHGCDDVL 179 +NK D + P + E A ++ KL ++ +V +A GH D+++ Sbjct: 490 VNKWDTI-PNKNQETAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNIV 538 >gi|34498989|ref|NP_903204.1| GTP-binding protein EngA [Chromobacterium violaceum ATCC 12472] gi|41017007|sp|Q7NS92|DER_CHRVO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|34104839|gb|AAQ61196.1| probable GTP-binding protein [Chromobacterium violaceum ATCC 12472] Length = 469 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI-VFL 75 +++SR A++G N GKSTLVN +G + I + TTR + I E+E + Sbjct: 169 EEDSRHPKFAVIGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSIY-IDFEREGHTYTII 227 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSS 131 DT G+ + K + + I+ A++ LV+D+ +L ++ D + A + Sbjct: 228 DTAGVRRRAKVNEMLEKFSVIKTMKAIEDANVAVLVLDA--QLDISEQDATIAGFALEAG 285 Query: 132 R-LILILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 R L++ +NK D + E+ + EIA KL F++ K +SA +G G D+ Sbjct: 286 RALVVAVNKWDNLDGEQKENVRREIARKLNFLDFAKFHYISAIEGRGVADLF 337 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 5/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR ++ ++V + TR G E + +DT G Sbjct: 4 TVALVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGQGRVGEKPYLVVDTGGFEPV 63 Query: 84 KDSYHKL-MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D M + + + AD V +VD L + + + + L +NK + Sbjct: 64 VDEGILFEMAKQTLQAVDEADAVVFLVDGRAGLTPQDKIIANRLRQLDRPVFLAVNKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +K + AE ++L E ++SA G G +++ + P Sbjct: 124 MK--HAIAGAEF-HELALGE-PLVISAAHGDGVRELMELVLEGFP 164 >gi|307297311|ref|ZP_07577117.1| ribosome biogenesis GTP-binding protein YsxC [Thermotogales bacterium mesG1.Ag.4.2] gi|306916571|gb|EFN46953.1| ribosome biogenesis GTP-binding protein YsxC [Thermotogales bacterium mesG1.Ag.4.2] Length = 190 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 16/166 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI-VRGIVSEKESQIVFLDTPGIFNA 83 +A G +N GKS+L+N G K++ + TRSI G+ E I F+D PG A Sbjct: 26 IAFAGRSNVGKSSLLNSLFGRKLAKTSSTPGKTRSINFYGVNRE----IYFVDLPGYGYA 81 Query: 84 KDS------YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 K S + KL+I + + + +V ++VD L+ +L+ + + IL+L Sbjct: 82 KASMSEREKWKKLIIDY-FESREELSLVVVLVDIRHPLQPADIQMLEWVTYYTIPFILVL 140 Query: 138 NKIDCV-KPERLLEQAEIANKLVFI---EKTFMVSATKGHGCDDVL 179 K D + + ++++ + I ++L + F+VSA K G +++L Sbjct: 141 TKADKLSRNQQIIAEKSIKDELASLGVYPPVFVVSAVKKQGIEELL 186 >gi|295395416|ref|ZP_06805615.1| GTP-binding protein HflX [Brevibacterium mcbrellneri ATCC 49030] gi|294971738|gb|EFG47614.1| GTP-binding protein HflX [Brevibacterium mcbrellneri ATCC 49030] Length = 510 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 35/232 (15%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L+NR A V + T VR + + DT G Sbjct: 283 SVAIVGYTNAGKSSLLNRLTDAGVMVKNELFATLDPTVRQAHTADGRVFTYTDTVGFV-- 340 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSSRLILIL 137 ++ H+L+ R + AD++ +VD SH + I H++L E +++ Sbjct: 341 RNLPHQLVEAFRSTLEEAADADLLLHIVDASHTDPLAQIKAVHEVLDEAQTIDIPELIVF 400 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NK D + L A L +VSA G G D++ + LP Sbjct: 401 NKADIADSDTL------ARVLNTYPNAVVVSAHTGQGIDELRERIDDLLP---------- 444 Query: 198 ISDLPMFHFTAEI--TREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIRQV 247 P H TA + R L H E V +EK+ + G++L+ V Sbjct: 445 ---RPSHHITALVPFDRGDLIARAHDE----GTVESEKYTAQ--GTLLVAMV 487 >gi|260662130|ref|ZP_05863026.1| ribosome-associated GTPase EngA [Lactobacillus fermentum 28-3-CHN] gi|260553513|gb|EEX26405.1| ribosome-associated GTPase EngA [Lactobacillus fermentum 28-3-CHN] Length = 437 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G +++IV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + I+ AD++ +VV+ + + + + +I RS++ ++L +NK+D Sbjct: 65 DQPLLTQIRQQAEIAIEEADVIIMVVNVENGV-TDADEQVAQILYRSNKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PER L+ + + + + + VS+ G G D+L+ Sbjct: 123 -NPERRLDVYDFYQ--LGLGEPYPVSSVHGVGLGDMLD 157 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 11/129 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDTPGIFNAK 84 + +G N GKS+LVN +G IV+ TTR + + K+ + +DT GI Sbjct: 178 SFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y + + S I ++D+V +V+++ REL +I E + +I+++N Sbjct: 238 KLYENTERYALMRSMRAIDNSDVVLVVLNAEEGIRELDKHIAGYAHEAGR---AVIIVVN 294 Query: 139 KIDCVKPER 147 K D + P+R Sbjct: 295 KWDTI-PDR 302 >gi|184155357|ref|YP_001843697.1| GTP-binding protein EngA [Lactobacillus fermentum IFO 3956] gi|238692974|sp|B2GC35|DER_LACF3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|183226701|dbj|BAG27217.1| GTP-binding protein [Lactobacillus fermentum IFO 3956] Length = 437 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR G +++IV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMS 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + + I+ AD++ +VV+ + + + + +I RS++ ++L +NK+D Sbjct: 65 DQPLLTQIRQQAEIAIEEADVIIMVVNVENGV-TDADEQVAQILYRSNKPVVLAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PER L+ + + + + + VS+ G G D+L+ Sbjct: 123 -NPERRLDVYDFYR--LGLGEPYPVSSVHGVGLGDMLD 157 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 11/129 (8%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES-QIVFLDTPGIFNAK 84 + +G N GKS+LVN +G IV+ TTR + + K+ + +DT GI Sbjct: 178 SFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y + + S I +D+V +V+++ REL +I E + +I+++N Sbjct: 238 KLYENTERYALMRSMRAIDDSDVVLVVLNAEEGIRELDKHIAGYAHEAGR---AVIIVVN 294 Query: 139 KIDCVKPER 147 K D + P+R Sbjct: 295 KWDTI-PDR 302 >gi|122702207|emb|CAL88294.1| GTPase [Helicobacter pylori] gi|122702209|emb|CAL88295.1| GTPase [Helicobacter pylori] Length = 170 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K++ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KEALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----APKSFNISVSHNRGISALIDAILNALNL 168 >gi|71893561|ref|YP_279007.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae J] gi|123645874|sp|Q4AAC5|MNME_MYCHJ RecName: Full=tRNA modification GTPase mnmE gi|71851688|gb|AAZ44296.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma hyopneumoniae J] Length = 442 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 LVGA N+GKS+L+N + +I++ TTR +V G DT GI + Sbjct: 221 LVGAPNSGKSSLLNILINENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEK 280 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 ++ I S+ +IK AD++ ++D+ + + N+ LK + + I NK D ++ + Sbjct: 281 IEQIGIEKSYESIKKADLILHIIDASEKNRQNLD--LKAKTRPDQIYLKIYNKSDLLENQ 338 >gi|148260756|ref|YP_001234883.1| GTP-binding protein, HSR1-related [Acidiphilium cryptum JF-5] gi|146402437|gb|ABQ30964.1| GTP-binding protein HflX [Acidiphilium cryptum JF-5] Length = 435 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 11/132 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL N GA V T +R IV Q + DT G + Sbjct: 207 VALVGYTNAGKSTLFNALTGATVHAQDQLFATLDPTMRLIVLPSGRQAILSDTVGFISDL 266 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRE---LKVNIHDLLKEIAKR-------SSRL 133 + R + + ADI+ V D +H + + ++ +L +A+ SSR Sbjct: 267 PTELVAAFRATLEEVAAADIILHVRDCAHPDSAAQRADVVSVLDGMARSGMIDEGWSSRC 326 Query: 134 ILILNKIDCVKP 145 I ++NKID + P Sbjct: 327 IEVMNKIDLLDP 338 >gi|313893405|ref|ZP_07826977.1| ribosome biogenesis GTPase Der [Veillonella sp. oral taxon 158 str. F0412] gi|313442046|gb|EFR60466.1| ribosome biogenesis GTPase Der [Veillonella sp. oral taxon 158 str. F0412] Length = 444 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N V ++SIV TR + + +DT GI Sbjct: 5 LVAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFI 64 Query: 84 KDSYHKL--MIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 ++ H + M+RL I+ AD++ VVD + + V + + I + S + ++L++NK Sbjct: 65 TENSHVIPKMMRLQAELAIEEADVILFVVDGKQGI-VPADEEVGNILRASGKPVVLVVNK 123 Query: 140 IDCVKPE 146 ID V E Sbjct: 124 IDSVNQE 130 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+ + VA++G N GKS+L N +G IV+ TTR + + + + V +DT Sbjct: 174 DDEDTIHVAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHGDQKFVLIDT 233 Query: 78 PGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ + I S ++ +DIV LV+D+ + + + ++ Sbjct: 234 AGMRRKSKIDEAVERYSIVRSLRSVDRSDIVVLVLDAQDGVTEQDKKIAGYAYEAGKGVV 293 Query: 135 LILNKIDCVK 144 +++NK D V+ Sbjct: 294 IVVNKWDLVE 303 >gi|269218471|ref|ZP_06162325.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211582|gb|EEZ77922.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 848 str. F0332] Length = 560 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 13/159 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VAL+G N GKS+L+NR G++ +V TTR V + +F+DT GI Sbjct: 298 VALLGRPNVGKSSLLNRLAGSERVVVDPTAGTTRDPVDEAIELDGQTWIFVDTAGIRRRV 357 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L R + A++ +++D+ L ++++ L+++ N Sbjct: 358 HQTKGADFYASLRTR---GALGKAELALVLIDASEPLTEQDIRVMQQAIDAGRALVVVCN 414 Query: 139 KIDCVKPERLLE-QAEIANKLV---FIEKTFMVSATKGH 173 K D V R E E+ LV + E+ + +AT H Sbjct: 415 KWDLVDEHRRRELDREMDRDLVQVQWAERVNLSAATGWH 453 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 71/181 (39%), Gaps = 38/181 (20%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR VG +V++V TR V S +DT G Sbjct: 123 VLAVVGRPNVGKSTLVNRIVGRRVAVVQDVPGVTRDRVGYPASWAGRDFTLVDTGG---- 178 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLV-------------VDSHRELKVNIHDLLKEIAK-- 128 W I A I V V + V I D +I K Sbjct: 179 ------------WE-IDVAGIDASVARQAEAAVQAADAVVLVVDANVGITDADADIVKLL 225 Query: 129 -RSSR-LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 RS R ++L NK+D E A + L E + +SA G G D+L+ + + L Sbjct: 226 RRSKRPVVLAANKVDSPMQE---SDAAVLWGLGLGEP-YPISALHGRGTGDLLDAVLAAL 281 Query: 187 P 187 P Sbjct: 282 P 282 >gi|319404912|emb|CBI78513.1| tRNA modification GTPase [Bartonella rochalimae ATCC BAA-1498] Length = 435 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + +VGA N+GKS+++NR G V+IV+ + TTR + + ++F DT G+ + Sbjct: 217 IVIVGAPNSGKSSILNRLSGRSVAIVSEEEGTTRDALEVRLVLSGLLVLFTDTAGLRKTE 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ L I + I AD+V V D + ++N + K S+ + + NK+D Sbjct: 277 NTIELLGIEKAKQHIVEADLVIFVYDMNNPQEIN-------LPKTSAEIWHVGNKLD 326 >gi|296158988|ref|ZP_06841816.1| ribosome-associated GTPase EngA [Burkholderia sp. Ch1-1] gi|295890863|gb|EFG70653.1| ribosome-associated GTPase EngA [Burkholderia sp. Ch1-1] Length = 445 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILILNK 139 AKD M R + ++ +DIV +VD L +I D L+++ + + L++NK Sbjct: 64 AKDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGR---PIFLVVNK 120 Query: 140 IDCVK 144 + +K Sbjct: 121 AEGMK 125 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 13/181 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R +A+VG N GKSTL+N VG + I TTR + +DT G Sbjct: 177 ARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAG 236 Query: 80 IFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + ++ K + + +I A++V L++D+ +++ + + ++ L++ Sbjct: 237 LRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDAHIAGFVVEQGRALVVG 296 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLCSTL 186 +NK D + P R +A++ KL F++ K +SA + G DD + L Sbjct: 297 VNKWDGLDPHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYAAAMAKL 356 Query: 187 P 187 P Sbjct: 357 P 357 >gi|203284100|ref|YP_002221840.1| thiophene and furan oxidation protein [Borrelia duttonii Ly] gi|226704780|sp|B5RL05|MNME_BORDL RecName: Full=tRNA modification GTPase mnmE gi|201083543|gb|ACH93134.1| thiophene and furan oxidation protein [Borrelia duttonii Ly] Length = 464 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 9/131 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 + L G+ N GKS+L N + +IV+ TTR ++ S + I+F DT G+ Sbjct: 224 TLVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQA--SFEFDGILFNVFDTAGLR 281 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILNK 139 D +L I S S IK A ++ VVD +L D LK I K SR++ +LNK Sbjct: 282 ETSDFVEQLGIVRSNSLIKEASLIFYVVDLSGKLT---DDDLKFIDAYKEDSRVLFVLNK 338 Query: 140 IDCVKPERLLE 150 +D + + +E Sbjct: 339 VDLEQNNQTVE 349 >gi|170781619|ref|YP_001709951.1| putative GTP-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169156187|emb|CAQ01329.1| putative GTP-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 521 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L+NR A V + T + VR +++ DT G Sbjct: 300 SVAIVGYTNAGKSSLLNRVTKAGVLVENALFATLDATVRKTETDQGQLYTLADTVGFV-- 357 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIAKRSSRLILIL 137 ++ H+L+ R + + +D++ VVD SH + +H+++ E+ + I++ Sbjct: 358 RNLPHQLVEAFRSTLEELADSDVLVHVVDASHPDPGAQLATVHEVIAEVNASAIPEIVVF 417 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D + + +A + VF VSA G G +++ + LP Sbjct: 418 NKSDLASADDRVVLRGLAPQGVF------VSARTGEGVEELRRRIAELLP 461 >gi|163786085|ref|ZP_02180533.1| GTP-binding protein EngA [Flavobacteriales bacterium ALC-1] gi|159877945|gb|EDP72001.1| GTP-binding protein EngA [Flavobacteriales bacterium ALC-1] Length = 434 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 5/167 (2%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR + + +IV TR G + +DT G + Sbjct: 2 SNIVAVVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGKEFSLIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + D + + + I AD + +VD + D+ + K + L++NK+ Sbjct: 62 VGSDDIFEAEIDKQVELAIDEADAIIFMVDVETGITGMDEDVANLLRKVKKPVFLVVNKV 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D K R + E + + + F +++ G G D+L+ + LP Sbjct: 122 DNNK--RAEDAVEFYS--LGLGDYFTIASINGSGTGDLLDAVVDALP 164 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G + IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRKSK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + S I+H D+ LV+D+ R + ++ + +++++NK D Sbjct: 238 VKEDLEFYSVMRSVRAIEHCDVCLLVLDATRGFDGQVQNIFWLAERNRKGIVILVNKWDL 297 Query: 143 VKPE 146 ++ E Sbjct: 298 IEKE 301 >gi|45656065|ref|YP_000151.1| tRNA modification GTPase TrmE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|73919887|sp|Q72VY6|MNME_LEPIC RecName: Full=tRNA modification GTPase mnmE gi|45599298|gb|AAS68788.1| tRNA modification GTPase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 456 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G N GKS+L+N +G + SI++ TTR + + + + +DT G+ Sbjct: 223 IVLYGEPNTGKSSLMNVLLGKERSIISEIPGTTRDYISEEIFLEGIPVRLVDTAGVRETT 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D KL I S + AD+ +VD + K N + + + +R ILI NKID + Sbjct: 283 DHIEKLGIERSEKEFQSADVRLFLVDVSK--KENWKEFINKSRERLEGSILIANKIDIL 339 >gi|330817163|ref|YP_004360868.1| GTPase family protein [Burkholderia gladioli BSR3] gi|327369556|gb|AEA60912.1| GTPase family protein [Burkholderia gladioli BSR3] Length = 448 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRAGARPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A+ + + +SA G G D++N Sbjct: 124 MK------YTAVASDFYELGMGDPRAISAAHGDGVTDMIN 157 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR +A+VG N GKSTLVN +G I TTR + +DT G Sbjct: 177 SRGVKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAG 236 Query: 80 IFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + ++ K + + +I A++V L++D+ +++ + + ++ L++ Sbjct: 237 LRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDAHIAGFVVEQGRALVVG 296 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 +NK D + R +A++ KL F+E K +SA + G +L Sbjct: 297 VNKWDGLDAHTRDRTKADLTRKLKFLEFAKFHFISAAEKTGIGPLL 342 >gi|293364063|ref|ZP_06610799.1| tRNA modification GTPase TrmE [Mycoplasma alligatoris A21JP2] gi|292552553|gb|EFF41327.1| tRNA modification GTPase TrmE [Mycoplasma alligatoris A21JP2] Length = 453 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 15/162 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 VA++G N GKS+L+N V +IVT TTR ++ S + I+F +DT G+ Sbjct: 227 VAILGKPNVGKSSLLNALVSENKAIVTDIAGTTRDLIE--TSYQLDGILFTLVDTAGLRK 284 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVD---SHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + ++ I+ S IK AD++ V+D + E + I +E K + I I+NK Sbjct: 285 SDELIEQIGIKKSLEQIKKADLILHVIDPLNNEDEFDLKIE---QESKKENKTYIKIINK 341 Query: 140 IDCVKPER----LLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 D + E+ L+ + + N ++ +EK ++S DD Sbjct: 342 KDLIIGEKVKSDLVLTSALNNDIIDLEKE-IISKYSNINLDD 382 >gi|148381031|ref|YP_001255572.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153930875|ref|YP_001385402.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935967|ref|YP_001388809.1| GTP-binding protein [Clostridium botulinum A str. Hall] gi|148290515|emb|CAL84643.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152926919|gb|ABS32419.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931881|gb|ABS37380.1| GTP-binding protein [Clostridium botulinum A str. Hall] Length = 594 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 25/209 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ--------TTRSIVRGIVSEKESQIVFL- 75 V+LVG TNAGKSTL N+ ++ +K + T I +S ++I+ L Sbjct: 364 VSLVGYTNAGKSTLRNKLCDTGIASAQNKEKVFEADMLFATLDITTRAISLPNNEIITLT 423 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD---SHRELKVN-IHDLLKEIAKR 129 DT G + H+L+ + + + ++D++ V+D E +++ ++++L+E+ Sbjct: 424 DTVGF--VRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDAVNNVLEELGTE 481 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL- 188 + ++IL+ NKID V ERL +K EK +SA G +D+L + TLP Sbjct: 482 NKQIILVFNKIDKVSMERL---NYFRDKFKD-EKVIEISARLGINLEDLLKLIEETLPYK 537 Query: 189 ---APWVYSADQISDLPMFHFTAEITREK 214 ++ D+ + H ++I E+ Sbjct: 538 LAEVEYIIPYDKQKTVAFLHRNSKIIEEE 566 >gi|91784203|ref|YP_559409.1| GTP-binding protein EngA [Burkholderia xenovorans LB400] gi|123168328|sp|Q13X32|DER_BURXL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91688157|gb|ABE31357.1| Small GTP-binding protein [Burkholderia xenovorans LB400] Length = 445 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILILNK 139 AKD M R + ++ +DIV +VD L +I D L+++ + + L++NK Sbjct: 64 AKDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGR---PIFLVVNK 120 Query: 140 IDCVK 144 + +K Sbjct: 121 AEGMK 125 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 13/181 (7%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R +A+VG N GKSTL+N VG + I TTR + +DT G Sbjct: 177 ARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAG 236 Query: 80 IFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 + ++ K + + +I A++V L++D+ +++ + + ++ L++ Sbjct: 237 LRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDAHIAGFVVEQGRALVVG 296 Query: 137 LNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLCSTL 186 +NK D + P R +A++ KL F++ K +SA + G DD + L Sbjct: 297 VNKWDGLDPHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYAAAMAKL 356 Query: 187 P 187 P Sbjct: 357 P 357 >gi|90581376|ref|ZP_01237172.1| putative GTP-binding protein HflX [Vibrio angustum S14] gi|90437486|gb|EAS62681.1| putative GTP-binding protein HflX [Vibrio angustum S14] Length = 429 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TISLVGYTNAGKSTLFNRITDAGVYAADQLFATLDPTLRKIAVADVGTAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + AD++ VVD+ RE + +L+EI ++I+ Sbjct: 257 RHLPHDLVAAFKATLKETQEADLLLHVVDASDDRFRENIEAVETVLEEIDAGEVPTLIIM 316 Query: 138 NKIDCVKPERLLEQAE--IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID LE AE I + + VSA +G G D + L L Sbjct: 317 NKIDN------LEHAEPRIERDEEGVPRRVWVSAMEGQGIDLLFQALTERL 361 >gi|254428914|ref|ZP_05042621.1| GTPase, putative [Alcanivorax sp. DG881] gi|196195083|gb|EDX90042.1| GTPase, putative [Alcanivorax sp. DG881] Length = 469 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 51/128 (39%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGDGQLGGYLYTVVDTGGIGEN 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D M S + AD+V +VD L + E+ K LI+NK D V Sbjct: 64 DDGIDVPMTSQSLQAVGEADVVLFMVDGRAGLTAADEQIASELRKLPKPTYLIVNKTDGV 123 Query: 144 KPERLLEQ 151 + + + Sbjct: 124 DADSAMSE 131 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 10/177 (5%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 EH+ + S VA++G N GKSTL+NR +G + +V TTR + Sbjct: 171 GEHRTSKKPGEDSIRVAVLGRPNVGKSTLINRMLGEERVVVFDHAGTTRDSIEVPFERMG 230 Query: 70 SQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 +DT G+ + K + + ++ A +V +V+D+ + LL Sbjct: 231 RAYTLIDTAGVRRRGKVFEMVEKFSVIKALQAMEAAQVVVVVIDAREGITDQDLHLLGYA 290 Query: 127 AKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDV 178 L++ +NK D ++ ER+ + + +L F K +SA G G D+ Sbjct: 291 LDSGRALMIAVNKWDGLEADHKERV--RVNLGRRLEFAPWVKIKFISALHGTGVGDL 345 >gi|122700597|emb|CAL87887.1| GTPase [Helicobacter pylori] Length = 170 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR + + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ++ A K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKE----KERSYAFSSFGAPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|119897222|ref|YP_932435.1| GTP-binding protein EngA [Azoarcus sp. BH72] gi|166224303|sp|A1K3Z3|DER_AZOSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119669635|emb|CAL93548.1| probable GTP-binding protein [Azoarcus sp. BH72] Length = 442 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 13/178 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 + LVG N GKSTL NR + ++V + TR G+ + + +DT G F+ Sbjct: 4 TIVLVGRPNVGKSTLFNRLTKTRDALVADQPGLTRDRHYGVGRVGDRDYLVVDTAG-FDP 62 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 AKD M R + I AD++ +VD R + D + +R+ R +++++NK Sbjct: 63 VAKDGIMHEMARQAEQAIAEADVLLFLVDG-RAGRTPHDDQIAAHLRRAGRPVVVVVNKA 121 Query: 141 DCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 + L++A +A + + VSA G G ++ + + P V +A+ Sbjct: 122 EG------LDRATVAADFHALGLGAPLAVSAAHGDGVKALVELVLAPFPADDEVEAAE 173 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTLVN +G + I TTR + Q +DT G+ Sbjct: 179 VAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDAIAIPFERGGKQYTLIDTAGLRRRG 238 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LV+D+ +++ + + L++ +NK D Sbjct: 239 KVFEAVEKFSVIKTLQAIQEANVVVLVLDAAQDISDQDAHIAGFVLDTGRALVVAINKWD 298 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 V R + ++A KL F+ + +SA + G +L Sbjct: 299 AVDDYRRARLKEDMARKLAFLSFARFHQISALRAEGIAALL 339 >gi|30682040|ref|NP_187815.2| emb2738 (embryo defective 2738); GTP binding [Arabidopsis thaliana] gi|209529777|gb|ACI49783.1| At3g12080 [Arabidopsis thaliana] gi|332641625|gb|AEE75146.1| GTP-binding protein [Arabidopsis thaliana] Length = 663 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 38/195 (19%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR VG +IV + TR + G + + V +DT G+ Sbjct: 161 VAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTVS 220 Query: 85 DSYHKLMIRLSWST------------------------------IKHADIVCLVVDSH-- 112 S +M L+ ST + + ++ VVD Sbjct: 221 KSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQAG 280 Query: 113 -RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATK 171 V I D L++ +IL +NK C P + L QA L F +SA Sbjct: 281 PSGADVEIADWLRKYYSHKY-IILAVNK--CESPRKGLMQASEFWSLGFTP--IPISALS 335 Query: 172 GHGCDDVLNYLCSTL 186 G G ++L+ +CS L Sbjct: 336 GTGTGELLDLVCSGL 350 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 36/170 (21%), Positives = 81/170 (47%), Gaps = 15/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI-- 80 +A++G N GKS+++N V +IV+ TTR + + + + +DT GI Sbjct: 370 AIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRK 429 Query: 81 ----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 ++ + + + ++ I+ +D+V LV+++ + + + I + +++ Sbjct: 430 KSSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVV 489 Query: 137 LNKIDCVKPERLLEQA-----EIANKLVFIEKTFMV--SATKGHGCDDVL 179 +NK D + P + E A ++ KL ++ +V +A GH D+++ Sbjct: 490 VNKWDTI-PNKNQETAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNIV 538 >gi|15643211|ref|NP_228255.1| hypothetical protein TM0445 [Thermotoga maritima MSB8] gi|4980952|gb|AAD35530.1|AE001722_14 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 404 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 14/168 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G N GKS+ +N VG VSIV+ + TT + + + + +DTPG+ + Sbjct: 12 IVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTPGLDDV 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + +L + + AD LV DS + ++ +L KE+ ++++NKID Sbjct: 72 GE-LGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEM---EIPFVVVVNKIDV 127 Query: 143 VKPERLLEQAEIANKLV---FIEKTFMVSATKGHGCDDVLNYLCSTLP 187 L E+AE L + K +VSA + G DD+ + LP Sbjct: 128 -----LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 170 >gi|33519978|ref|NP_878810.1| GTP-binding protein EngA [Candidatus Blochmannia floridanus] gi|33504324|emb|CAD83216.1| predicted GTPase [Candidatus Blochmannia floridanus] Length = 485 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 9/173 (5%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 + N+ V ++G N+GKST VN + + IV+ TTR V ++ + +F+ Sbjct: 204 LNQNNEPIIVVIIGRPNSGKSTFVNYLLKEERMIVSDIPGTTRDSVYIPITYNNDKYMFV 263 Query: 76 DTPGIFNAK--DSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT GI K S + + +L + +K+A + ++D + LL I K S Sbjct: 264 DTAGIRKKKHVSSVAEQISKLKTLQILKYAHVTLFILDIQEGIVNQDLSLLNFITKSSKS 323 Query: 133 LILILNKIDCVKP----ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 LI+ +NK D ++ L + E+ K+ F+ K +SA G G ++ Sbjct: 324 LIIAVNKYDIFSSKTGFDKTLMKEELNKKISFLNFVKIHYISALYGSGIKNLF 376 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 7/165 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + LVG N GKSTL NR + ++V+ TR G + K + + +DT G Sbjct: 11 VIVLVGQENVGKSTLFNRLTCTRDALVSSYPGLTRDRKYGYIKYKNFKFILIDTGGFNIF 70 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ + I + I+ + I+ VVD ++ +++ + K + +++NKID Sbjct: 71 SDTLIQDCINDQTNIAIQESCIILFVVDGKKQGSSEDWNIITYLRKLKKGIFVVINKIDN 130 Query: 143 VKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLN--YLCS 184 +I + ++ I+ ++SA G+G +L+ YL S Sbjct: 131 AIS---YNNYKIWDYYLYGIKNVVIISAVHGYGISTLLDKIYLQS 172 >gi|329908683|ref|ZP_08274923.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae bacterium IMCC9480] gi|327546633|gb|EGF31597.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae bacterium IMCC9480] Length = 433 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 + L G N GKS+L+N GA ++IVT TTR V + + + +DT GI ++A Sbjct: 198 IVLAGQPNVGKSSLLNALAGADIAIVTPIAGTTRDKVTETIQIEGIPLNIIDTAGIRYDA 257 Query: 84 K--DSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 + D ++ I +W+ + AD++ ++D+ R Sbjct: 258 EAIDDVERIGIERTWAAVAQADVIIHLLDACR 289 >gi|255086559|ref|XP_002509246.1| predicted protein [Micromonas sp. RCC299] gi|226524524|gb|ACO70504.1| predicted protein [Micromonas sp. RCC299] Length = 468 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 10/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFN- 82 VA++G N GKS+L+N+ G SIV+ TTR +I ++ + +DT GI Sbjct: 200 VAIIGRPNVGKSSLLNQLAGDARSIVSDYSGTTRDTIDSDVIGADGKKYTLIDTAGIRRR 259 Query: 83 -----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA--KRSSRLIL 135 +KD+ L + + ++ AD+V LV+D+ E +L E A + L+L Sbjct: 260 TSVAASKDAPESLAVGRALQAMRRADVVVLVIDAE-EGPSQQDFVLSERAAVQEGCALVL 318 Query: 136 ILNKID 141 +NK D Sbjct: 319 CVNKWD 324 >gi|254467101|ref|ZP_05080512.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium Y4I] gi|206688009|gb|EDZ48491.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium Y4I] Length = 428 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG VA+VGA N GKSTL+N G + +I + TTR I+ + + LDT G Sbjct: 211 RSGFEVAIVGAPNVGKSTLLNALAGREAAITSEYAGTTRDIIEVRMDLAGLPVTLLDTAG 270 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 + + D + I L+ + AD+ + + L V + Sbjct: 271 LRDTDDHVEGIGIALARKRAQDADLRVFLAERDEVLDVEMQ 311 >gi|148269615|ref|YP_001244075.1| small GTP-binding protein [Thermotoga petrophila RKU-1] gi|170288291|ref|YP_001738529.1| small GTP-binding protein [Thermotoga sp. RQ2] gi|147735159|gb|ABQ46499.1| small GTP-binding protein [Thermotoga petrophila RKU-1] gi|170175794|gb|ACB08846.1| small GTP-binding protein [Thermotoga sp. RQ2] Length = 404 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 14/168 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G N GKS+ +N VG VSIV+ + TT + + + + +DTPG+ + Sbjct: 12 IVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTPGLDDV 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + +L + + AD LV DS + ++ +L KE+ ++++NKID Sbjct: 72 GE-LGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEM---EIPFVVVVNKIDV 127 Query: 143 VKPERLLEQAEIANKLV---FIEKTFMVSATKGHGCDDVLNYLCSTLP 187 L E+AE L + K +VSA + G DD+ + LP Sbjct: 128 -----LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 170 >gi|332830164|gb|EGK02792.1| GTP-binding protein engA [Dysgonomonas gadei ATCC BAA-286] Length = 437 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 7/165 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 VA+VG N GKSTL NR ++ +IV TTR G + +DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTESRQAIVDETSGTTRDRQYGKTEWGGQEFSLVDTGGWV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 N+ D + + + I+ AD++ +VD L ++ + + +RS + +IL+ NK Sbjct: 62 VNSDDVFESEINKQVSIAIEEADVILFLVDVMNGL-TDLDSSVGNMLRRSKKPIILVSNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 D L + + +SA G G D+L+ + + Sbjct: 121 ADNFN----LHHQSAEFYALGLGDPVNISAINGAGTGDLLDLIIT 161 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A+VG NAGKS+ VN + + +IVT+ TTR + +DT GI Sbjct: 178 IAIVGRPNAGKSSFVNALMDEERNIVTNIAGTTRDSIYTRFDRFNMDFYLVDTAGIRKKG 237 Query: 83 --AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D + +IR S I+++D+ L++D+ + ++ ++ I K L++ +NK Sbjct: 238 KVTEDLEYYSVIR-SIKAIENSDVCVLMLDATQGIESQDLNIFSLIQKNRKGLVVCVNKW 296 Query: 141 DCVK 144 D V+ Sbjct: 297 DLVE 300 >gi|281411667|ref|YP_003345746.1| small GTP-binding protein [Thermotoga naphthophila RKU-10] gi|281372770|gb|ADA66332.1| small GTP-binding protein [Thermotoga naphthophila RKU-10] Length = 404 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 14/168 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G N GKS+ +N VG VSIV+ + TT + + + + +DTPG+ + Sbjct: 12 IVVAGRRNVGKSSFMNTLVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTPGLDDV 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + +L + + AD LV DS + ++ +L KE+ ++++NKID Sbjct: 72 GE-LGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEM---EIPFVVVVNKIDV 127 Query: 143 VKPERLLEQAEIANKLV---FIEKTFMVSATKGHGCDDVLNYLCSTLP 187 L E+AE L + K +VSA + G DD+ + LP Sbjct: 128 -----LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 170 >gi|269956364|ref|YP_003326153.1| cytidylate kinase [Xylanimonas cellulosilytica DSM 15894] gi|269305045|gb|ACZ30595.1| cytidylate kinase [Xylanimonas cellulosilytica DSM 15894] Length = 725 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 14/158 (8%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 +EH + R VALVG N GKS+L+N+ G++ +V TTR V ++ K Sbjct: 454 SEHGELRPTGPRR--VALVGRPNVGKSSLLNKVAGSERVVVDEIAGTTRDPVDELILLKG 511 Query: 70 SQIVFLDTPGI------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 F+DT GI + D Y L + + I+ A++ +++D+ + L +L Sbjct: 512 VPYWFVDTAGIRRRVHQTSGADFYASLR---TAAAIEKAEVAVVLLDASQPLTEQDTRVL 568 Query: 124 KEIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLV 159 +++ L++ NK D + +R LE+ EI +LV Sbjct: 569 QQVVDAGRALVIAYNKWDLMDEDRRPYLER-EIEKELV 605 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 292 VLAIIGRPNVGKSTLVNRVIGRREAVVEDKPGVTRDRVTYPAEWAGREFHVVDTGGWEVD 351 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I AD V VVD+ +++ + + ++L NK+D Sbjct: 352 VAGIESKVAEQAEVAITLADAVMFVVDATVGATATDERVVELLRRSGKPVVLAANKVDG- 410 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P + A + + + + + +SA G G D+L + LP Sbjct: 411 -PSGEADAAYLWS--LGLGEPHPISALHGRGVGDLLEAAMAVLP 451 >gi|215427036|ref|ZP_03424955.1| GTP-binding protein EngA [Mycobacterium tuberculosis T92] gi|289750270|ref|ZP_06509648.1| GTP-binding protein engA [Mycobacterium tuberculosis T92] gi|289690857|gb|EFD58286.1| GTP-binding protein engA [Mycobacterium tuberculosis T92] Length = 334 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V + V DT G Sbjct: 28 VVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPN 87 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L+ + ++ AD V LVVD+ + + + + L NK+D Sbjct: 88 AKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSE 147 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E + A + + + + + +SA G G D+L+ + + LP Sbjct: 148 KGES--DAAALWS--LGLGEPHAISAMHGRGVADLLDGVLAALP 187 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ F+DT G+ Sbjct: 202 VALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKV 261 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + + I A++ +++D+ + L ++ + + L+L NK D Sbjct: 262 GQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWD 321 Query: 142 CVKPER 147 V +R Sbjct: 322 LVDEDR 327 >gi|183982543|ref|YP_001850834.1| GTP-binding protein, EngA [Mycobacterium marinum M] gi|238690962|sp|B2HRU9|DER_MYCMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|183175869|gb|ACC40979.1| GTP-binding protein, EngA [Mycobacterium marinum M] Length = 469 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + V DT G Sbjct: 31 VLAIVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWNGRRFVVQDTGGWEPD 90 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L+ + ++ AD V LVVD+ + + + + L NK+D Sbjct: 91 AKGLQQLVAEQASVAMRTADAVVLVVDATVGATTADEAAARILLRSGKPVFLAANKVDSD 150 Query: 144 KPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E A+ A + + + +SA G G D+L+ + LP Sbjct: 151 KAE-----ADAATLWSMGLGEPHAISAMHGRGVADLLDTVLKKLP 190 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 18/185 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 VALVG N GKS+L+N+ G + S+V TT V ++ F+DT G+ Sbjct: 205 VALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKV 264 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ + + I A++V L++D+ + L +L + + ++L NK D Sbjct: 265 GQASGHEFYASVRTRGAIDAAEVVVLLIDASQPLTEQDLRVLSMVIEAGRAVVLAYNKWD 324 Query: 142 CVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTL----------P 187 V +R LL++ EI +LV I + +SA G ++ + + L P Sbjct: 325 LVDEDRRDLLDR-EIDRELVQIRWAQRVNISAKTGRAVQKLVPAMETALASWDTRIPTGP 383 Query: 188 LAPWV 192 L W+ Sbjct: 384 LNSWI 388 >gi|7208811|emb|CAB76934.1| putative GTP-binding protein [Clostridium thermocellum] Length = 400 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + G NAGKS++VN G ++IV+ K TT + + + +V +DTPGI + Sbjct: 14 IGFFGKRNAGKSSVVNAVTGQNLAIVSDVKGTTTNPVYKAMELLPLGPVVIIDTPGI-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + ++ ++ S + DI LV+D+ + L++ K+ + +++ NK D Sbjct: 73 KGTLGEMRVKRSRQVLNKTDIAVLVIDATCGKSEDDEKLIELFEKKDIKYVVVYNKADLE 132 Query: 144 KPERLLEQAEI 154 E + EI Sbjct: 133 GHEETVGDNEI 143 >gi|326403953|ref|YP_004284035.1| GTP-binding protein HflX [Acidiphilium multivorum AIU301] gi|325050815|dbj|BAJ81153.1| GTP-binding protein HflX [Acidiphilium multivorum AIU301] Length = 435 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 11/132 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL N GA V T +R IV Q + DT G + Sbjct: 207 VALVGYTNAGKSTLFNALTGATVHAQDQLFATLDPTMRLIVLPSGRQAILSDTVGFISDL 266 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRE---LKVNIHDLLKEIAKR-------SSRL 133 + R + + ADI+ V D +H + + ++ +L +A+ SSR Sbjct: 267 PTELVAAFRATLEEVAAADIILHVRDCAHPDSAAQRADVVSVLDGMARSGMIDEGWSSRC 326 Query: 134 ILILNKIDCVKP 145 I ++NKID + P Sbjct: 327 IEVMNKIDLLDP 338 >gi|297180284|gb|ADI16503.1| predicted GTPases [uncultured bacterium HF4000_05M23] Length = 440 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 18/208 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VA+ G NAGKS L N G +IV+ TTR + + ++I FLDT G+ Sbjct: 180 VAIAGRPNAGKSALFNALAGEDRAIVSPVPGTTRDTLDSQFDFEGTRITFLDTAGLRRRG 239 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A+ K + I+ + + LV+D+ + + I S ++++NK D Sbjct: 240 KAEAGIEKYSAIRTIGAIERSYVSILVLDATEFVTAQDTHIGGYIDDASRAAVVVVNKWD 299 Query: 142 C---VKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCD-------DVLNYLCSTLPLA 189 +K +R + E+ N+ FI +V SA G G + +V +P A Sbjct: 300 LAYDLKLDRAEAEEEVKNRFKFIPDVPVVFTSALTGRGVNKLLPTIINVYGEFTKQIPRA 359 Query: 190 PWVYSA-DQISDLPMFHFTAEITREKLF 216 + D + D PM F + R ++F Sbjct: 360 EVSRAIFDAMGDNPMPGFGSR--RPRIF 385 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 18/171 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTL NR G +++IV+ TTR V + + +DT G+ + Sbjct: 6 IAIIGRPNVGKSTLFNRLAGRRIAIVSDIPGTTRDRVSIDAEWGRHRYLLVDTAGV---E 62 Query: 85 DSYHKLMIRLSWSTIK--------HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 D H ++ W IK AD + VD + + D + + +++ Sbjct: 63 DRPHNALL---WDDIKKQVEIALNQADGIIFTVDVNEGVTDADEDAADMVRRACRPVVVA 119 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK D + E L+ + + + +SA G D++ + + +P Sbjct: 120 ANKTDSLAREDLIYDF----YSLGLGEPHPISAYHDSGIGDLMEAMFAAMP 166 >gi|288920757|ref|ZP_06415057.1| GTP-binding proten HflX [Frankia sp. EUN1f] gi|288347833|gb|EFC82110.1| GTP-binding proten HflX [Frankia sp. EUN1f] Length = 502 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 18/194 (9%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ + E K + VA+ G TNAGKS+L+NR GA V + T V Sbjct: 257 ELAAMATVRETKRSSRRRGAVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTV 316 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN- 118 R DT G + H+++ R + + AD+V VVD + Sbjct: 317 RRATLPDGRVFTLADTVGFV--RHLPHQIVEAFRSTLEEVVDADLVLHVVDGSAPDPMGQ 374 Query: 119 ---IHDLLKEIAKRSSRLILILNKIDCVKPERL--LEQAEIANKLVFIEKTFMVSATKGH 173 + ++L EI ++++NK+D V P L L +A + VSA G Sbjct: 375 ITAVREVLAEIDAAGVPELVVVNKVDAVDPTTLAVLRKA--------VPDAIFVSARSGT 426 Query: 174 GCDDVLNYLCSTLP 187 G ++++ L +P Sbjct: 427 GLAELVDALSERIP 440 >gi|203287638|ref|YP_002222653.1| thiophene and furan oxidation protein [Borrelia recurrentis A1] gi|226704781|sp|B5RQZ8|MNME_BORRA RecName: Full=tRNA modification GTPase mnmE gi|201084858|gb|ACH94432.1| thiophene and furan oxidation protein [Borrelia recurrentis A1] Length = 464 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 9/131 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 + L G+ N GKS+L N + +IV+ TTR ++ S + I+F DT G+ Sbjct: 224 TLVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQA--SFEFDGILFNVFDTAGLR 281 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILNK 139 D +L I S S IK A ++ VVD +L D LK I K SR++ +LNK Sbjct: 282 ETSDFVEQLGIVRSNSLIKEASLIFYVVDLSGKLT---DDDLKFIDAYKEDSRVLFVLNK 338 Query: 140 IDCVKPERLLE 150 +D + + +E Sbjct: 339 VDLEQNNQTVE 349 >gi|13540832|ref|NP_110520.1| GTPase [Thermoplasma volcanium GSS1] gi|14324215|dbj|BAB59143.1| GTP1/OBG family GTP-binding protein [Thermoplasma volcanium GSS1] Length = 360 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 4/100 (4%) Query: 12 HKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ 71 H F S VALVG N GKS+L+N ++ + ++ T ++I G++ K ++ Sbjct: 50 HYGFSIPKSGDATVALVGFPNVGKSSLLNVLTNSESEVGSYAFTTLKAIP-GVMEYKGAE 108 Query: 72 IVFLDTPGIF-NAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 I LD PGI NA SY R ST++ AD++ +V D Sbjct: 109 IQILDLPGIIENA--SYGAGRGREILSTVRSADLIVIVTD 146 >gi|238787582|ref|ZP_04631380.1| Uncharacterized GTP-binding protein yhbZ [Yersinia frederiksenii ATCC 33641] gi|238724369|gb|EEQ16011.1| Uncharacterized GTP-binding protein yhbZ [Yersinia frederiksenii ATCC 33641] Length = 390 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 21/192 (10%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E +D + V ++G NAGKST + AK + + T + + + E Sbjct: 147 GETRDLTLELLLLADVGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLIPSLGVVRMDHE 206 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD-------IVCLVVDSHRELKVNIHDL 122 V D PG+ L IR +KH + +V L + N + Sbjct: 207 QSFVVADIPGLIEGASEGAGLGIRF----LKHLERCRVLLHLVDLAPIDESDPVENAKII 262 Query: 123 LKEIAKRSSRLI-----LILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHG-- 174 + E+ + S L L+ NKID V PE +A+ I L + +K +M+SA Sbjct: 263 INELQQYSENLAEKPRWLVFNKIDLVDPEEAEARAKAIVEALGWEDKYYMISAANRENVN 322 Query: 175 --CDDVLNYLCS 184 C DV+N+L S Sbjct: 323 ALCWDVMNFLNS 334 >gi|307244110|ref|ZP_07526228.1| ribosome-associated GTPase EngA [Peptostreptococcus stomatis DSM 17678] gi|306492481|gb|EFM64516.1| ribosome-associated GTPase EngA [Peptostreptococcus stomatis DSM 17678] Length = 442 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 13/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ N+ G K+SIV TR + G V +DT GI Sbjct: 8 IVAVVGRPNVGKSTIFNKLTGTKISIVEDTPGVTRDRIFGEVEWLNKYFTIIDTGGIEPE 67 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D +R + + A ++ VVD L ++ + + ++L++NKID Sbjct: 68 SDDIILSQMRNQAMLAVDMAHVILFVVDGKSGLTAADKEVADILRRTKKPVLLVVNKIDS 127 Query: 143 VKPERLLEQAEIANKLVFIE----KTFMVSATKGHGCDDVLNYLCSTLP 187 +++ N F E +S G D+L+ + P Sbjct: 128 --------KSQFDNVYDFYELGLGNPIAISGANSMGLGDLLDEVVENFP 168 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKS+++N +G + IV+ TTR + + +++ + +DT GI Sbjct: 182 VAITGKPNAGKSSILNNILGEERVIVSPIAGTTRDAIDTYFEKDDNKFLLIDTAGIRRRS 241 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDS 111 Y + +IR S S + AD+V +V+D+ Sbjct: 242 KVYENVERFSVIR-SMSAVDRADVVLIVIDA 271 >gi|300704408|ref|YP_003746011.1| GTP-binding protein HflX [Ralstonia solanacearum CFBP2957] gi|299072072|emb|CBJ43404.1| GTP-binding protein hflX, GTPase activity [Ralstonia solanacearum CFBP2957] Length = 417 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A+ T + R + + +V DT G Sbjct: 203 SVSLVGYTNAGKSTLFNALTKARTYAANQLFATLDTTSRRLYLDGLGNVVLSDTVGFIRD 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ + +L EI IL++N Sbjct: 263 LPTQLVAAFRATLEETVHADVLLHVVDAASAVKHEQME-QVDRVLAEIDASGIPQILVMN 321 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 KID + R + I + VSA +G G + + L T Sbjct: 322 KIDAAEELR-TQGPRIERDEAGAVRRVFVSALEGAGLELLREALVET 367 >gi|295839702|ref|ZP_06826635.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74] gi|295827618|gb|EFG65509.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74] Length = 488 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVNR +G + ++V + TR V + +DT G Sbjct: 52 LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 111 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + I+ +D V VVD+ +++ + K ++L NK+D Sbjct: 112 LGIDASVAAQAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDG-- 169 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P + A + + + + + VSA G G D+L+ + LP AP Sbjct: 170 PSGEADAAMLWS--LGLGEPHPVSALHGRGTGDMLDAVLEALPEAP 213 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VAL+G N GKS+L+N+ G +V + TTR V ++ F+DT GI Sbjct: 228 VALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 287 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++D + V +L L+L N Sbjct: 288 HLQQGADYYASLR---TAAAVEKAEVAVVLIDGADSISVQDQRILTMAVDAGRALVLAYN 344 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 345 KWDTLDEER 353 >gi|225389099|ref|ZP_03758823.1| hypothetical protein CLOSTASPAR_02845 [Clostridium asparagiforme DSM 15981] gi|225044833|gb|EEG55079.1| hypothetical protein CLOSTASPAR_02845 [Clostridium asparagiforme DSM 15981] Length = 441 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+++N+ +G IV+ TTR V + + VF+DT G+ K Sbjct: 180 IAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAVDTEIVHDGTPYVFIDTAGL-RRK 238 Query: 85 DSYHKLMIRLSW----STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 H+ + R S + ++ ADIV +V+D+ + + +R +I+ +NK Sbjct: 239 SKIHEELERYSIIRTVTAVERADIVVVVIDAKEGVTEQDAKIAGIAHERGKGIIVAVNKW 298 Query: 141 DCVK 144 D ++ Sbjct: 299 DAIE 302 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 7/123 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N G +SIV TR + S +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNVLAGETISIVKDTPGVTRDRIYADCSWLNMNFTLIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILILNK 139 D M + I AD++ +VD + L + D+L+ K ++L +NK Sbjct: 65 TSDVILSQMREQAEIAIATADVIVFIVDVRQGLVDADTKVADMLR---KSRKPVVLAVNK 121 Query: 140 IDC 142 +D Sbjct: 122 VDS 124 >gi|12322014|gb|AAG51052.1|AC069473_14 GTPase, putative; 34281-30152 [Arabidopsis thaliana] Length = 659 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 38/195 (19%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR VG +IV + TR + G + + V +DT G+ Sbjct: 157 VAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTVS 216 Query: 85 DSYHKLMIRLSWST------------------------------IKHADIVCLVVDSH-- 112 S +M L+ ST + + ++ VVD Sbjct: 217 KSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQAG 276 Query: 113 -RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATK 171 V I D L++ +IL +NK C P + L QA L F +SA Sbjct: 277 PSGADVEIADWLRKYYSHKY-IILAVNK--CESPRKGLMQASEFWSLGFTP--IPISALS 331 Query: 172 GHGCDDVLNYLCSTL 186 G G ++L+ +CS L Sbjct: 332 GTGTGELLDLVCSGL 346 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 36/170 (21%), Positives = 81/170 (47%), Gaps = 15/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI-- 80 +A++G N GKS+++N V +IV+ TTR + + + + +DT GI Sbjct: 366 AIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRK 425 Query: 81 ----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 ++ + + + ++ I+ +D+V LV+++ + + + I + +++ Sbjct: 426 KSSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVV 485 Query: 137 LNKIDCVKPERLLEQA-----EIANKLVFIEKTFMV--SATKGHGCDDVL 179 +NK D + P + E A ++ KL ++ +V +A GH D+++ Sbjct: 486 VNKWDTI-PNKNQETAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNIV 534 >gi|332969954|gb|EGK08954.1| ribosome-associated GTPase EngA [Kingella kingae ATCC 23330] Length = 489 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A++G N GKSTLVN +G + I TTR + +DT G+ Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFERDNKPFTIIDTAGVRRRGK 238 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ K + + ++ A++ LV+D+ +++ + + L++ +NK D Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVIAVNKWDG 298 Query: 143 VKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + ER + + +IA KL F++ K +SA K G D + + + + Sbjct: 299 ISDERREQVKRDIARKLYFLDFAKLHFISALKEKGIDGLFDSIQAA 344 Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTKTKDALVHDLPGLTRDRHYGHAKVGSKPYLVVDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS H+ M + + + AD V +VD+ L + + + + L +NK + Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVIFLVDARTGLTPQDKIIADRLRQSPRPVFLAVNKGE 122 Query: 142 CV-KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +P E E+A + + +++S G G ++ + P A Sbjct: 123 GGNRPVLAAEFYELA-----LGEPYVISGAHGDGVYYLIEDVLENFPDA 166 >gi|325846572|ref|ZP_08169487.1| ribosome biogenesis GTPase Der [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481330|gb|EGC84371.1| ribosome biogenesis GTPase Der [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 438 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 ++ V LVG TN GKSTL N+ VG + +I + TR V V + + DT G+ Sbjct: 2 KAPIVTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILADTGGL 61 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + K+ ++ + + +D++ VVD + + ++ E+ K + ++I++ NK Sbjct: 62 DISNKEIMNQEIKSQVEKALLESDLILFVVDGREGINPHDFEISSELRKYNKKVIVVANK 121 Query: 140 ID 141 ID Sbjct: 122 ID 123 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 18/169 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A++G NAGKS+LVN + + IVT TTR + K++ V +DT G+ Sbjct: 178 IAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDTYWQYKDNNYVLIDTAGLRRKN 237 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 D+ + ++ + ++I ++D+ V + + +IA + +I+ + Sbjct: 238 KVSDNIEYYANQRTFDAVDSSEICLFLIDA----TVGVTEQDTKIAGYAHNKRKAIIIAV 293 Query: 138 NKIDCVKPE----RLLEQAEIANKLVF--IEKTFMVSATKGHGCDDVLN 180 NK D V+ E R +E+ EI NKL F +S KG D+LN Sbjct: 294 NKWDKVEKETNTMRNMER-EIRNKLSFALYAPIIFISVLKGQRITDLLN 341 >gi|292806422|gb|ADE42341.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K + I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KGALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G +++ + + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGISALIDAVLNALNL 168 >gi|222099201|ref|YP_002533769.1| Small GTP-binding protein [Thermotoga neapolitana DSM 4359] gi|221571591|gb|ACM22403.1| Small GTP-binding protein [Thermotoga neapolitana DSM 4359] Length = 439 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 14/168 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G N GKS+ +N VG VSIV+ + TT + + + + +DTPG+ + Sbjct: 47 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 106 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + +L + + AD LV DS + ++ +L KE+ ++++NKID Sbjct: 107 GE-LGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEM---EIPFVVVVNKIDV 162 Query: 143 VKPERLLEQAEIANKLV---FIEKTFMVSATKGHGCDDVLNYLCSTLP 187 L E+AE L + K +VSA + G DD+ + LP Sbjct: 163 -----LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 205 >gi|149173742|ref|ZP_01852371.1| probable GTP-binding protein [Planctomyces maris DSM 8797] gi|148847272|gb|EDL61606.1| probable GTP-binding protein [Planctomyces maris DSM 8797] Length = 468 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 15/171 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A+VG N GKS++ N G +V+IV TR V +V EK+ +DT GI Sbjct: 6 IAIVGRPNVGKSSIFNWLAGHRVAIVDPTAGVTRDRVTYLVHEKDRYFELVDTGGIGITD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL----ILILNK 139 D + + R I AD++ VVD + + L +E+A R + IL +NK Sbjct: 66 SDDLSEDIERQIQVGIDEADLILFVVDGS----LGVVHLDEEVATRLRLIEKPKILCINK 121 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGH-GCDDVLNYLCSTLPLA 189 D K + E A ++++ KG+ +++L+ + LP A Sbjct: 122 CDSTKTD-----DEAAQFFRLTNSPVVLTSVKGNRNRNELLDEIMKQLPPA 167 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKST +N ++ IV+ TTR V + + +DTPG+ K Sbjct: 186 IAIVGRRNVGKSTFINALAESERMIVSEVAGTTRDSVDIRFEFDDKSFLAIDTPGVRKRK 245 Query: 85 DSYHKL---MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + + +I+ A++V + DS + L+ EI + I ++NK D Sbjct: 246 SLANDIEFYGLTRAKRSIRRANVVLMFFDSQETVSKVDKQLVAEIDENHKPCIFVINKWD 305 Query: 142 CVKPERLLEQ 151 + +++ + Sbjct: 306 LGREKKMTSE 315 >gi|46198870|ref|YP_004537.1| tRNA modification GTPase TrmE [Thermus thermophilus HB27] gi|81830635|sp|Q72K85|MNME_THET2 RecName: Full=tRNA modification GTPase mnmE gi|46196493|gb|AAS80910.1| thiophene and furan oxidation protein thdF [Thermus thermophilus HB27] Length = 433 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 Q +R +AL+GA NAGKS+L+N +G + ++V+ TTR + + +V Sbjct: 214 LAQKGAR---LALIGAPNAGKSSLLNALLGYERALVSPIPGTTRDYLEAPLELFGIPLVA 270 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 +DT G+ +D ++ + + + AD+V VVD Sbjct: 271 VDTAGVRETEDPVERMGVERALRIAEEADLVLYVVD 306 >gi|240047711|ref|YP_002961099.1| tRNA modification GTPase TrmE [Mycoplasma conjunctivae HRC/581] gi|239985283|emb|CAT05296.1| tRNA modification GTPase mnmE [Mycoplasma conjunctivae] Length = 440 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N+GKS+L+N + +IV+ TTR +V G DT GI AK Sbjct: 219 VTIVGVPNSGKSSLLNALLKENKAIVSEIAGTTRDVVEGNFQIDNILFKVSDTAGIRKAK 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I+ ++ I D++ V+DS + ++ I + I + NK D ++ Sbjct: 279 DQIEQIGIQKAFEQISKNDLIIHVIDSQKGFDKTDQEIASTITNQV--YIQVYNKADLIE 336 Query: 145 PER 147 ++ Sbjct: 337 AKQ 339 >gi|220904152|ref|YP_002479464.1| GTP-binding proten HflX [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868451|gb|ACL48786.1| GTP-binding proten HflX [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 561 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 19/188 (10%) Query: 5 EITFFNEHKDFVQDN-SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 ++ + F +D SR G ALVG TNAGKSTL+N ++V + T Sbjct: 363 DLERLRRQRAFTRDRRSRQGIPLAALVGYTNAGKSTLLNTLTRSEVLVENKLFATLDPTT 422 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVN 118 R + E +++ DT G ++ +LM R + ++ A ++ V D SH +L Sbjct: 423 RRLRFPAEKELILADTVGFI--RNLPKELMDAFRATLEELEAAHLLLHVADASHPDLLQQ 480 Query: 119 I---HDLLKEIAKRSSRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHG 174 I +L E+ +LILNK D ++ P R AE+A+ V+A G G Sbjct: 481 ISAVETILAEMELDRMPRLLILNKWDQLEAPAR----AELADA---FPHALPVAAKTGEG 533 Query: 175 CDDVLNYL 182 C +L L Sbjct: 534 CKPLLEQL 541 >gi|119716729|ref|YP_923694.1| GTP-binding protein EngA [Nocardioides sp. JS614] gi|119537390|gb|ABL82007.1| small GTP-binding protein [Nocardioides sp. JS614] Length = 461 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 4/163 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V S +DT G Sbjct: 28 VLAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDASWNGRAFTVVDTGGWDPD 87 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + AD V VVD+ + +++ + K + ++L NK+D Sbjct: 88 ARGLAERIAGQAEVAVSLADAVLFVVDATVGITDADEAVVRILRKSAKPVVLAANKVDDQ 147 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E E + N + + + + VSA G G D+L+ + + L Sbjct: 148 RTE--AEAYGLWN--LGLGEPYAVSALHGRGSGDLLDAVLAAL 186 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A+VG N GKS+L+N+ G + ++V + TT V ++ F+DT GI Sbjct: 203 IAIVGKPNVGKSSLLNKLAGEERAVVDNVAGTTVDPVDELIELGGKTWRFIDTAGIRKRV 262 Query: 83 AKDSYHKLMIRLSWST-IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + S H+ L +T I A++ LVVD + +++ + + L++ NK D Sbjct: 263 KEASGHEYYASLRTATAIDRAEVAVLVVDGGESISEQDVRIIQTVREAGRALVIAFNKWD 322 Query: 142 CVKPER 147 V ER Sbjct: 323 LVDEER 328 >gi|260434834|ref|ZP_05788804.1| ribosome-associated GTPase EngA [Synechococcus sp. WH 8109] gi|260412708|gb|EEX06004.1| ribosome-associated GTPase EngA [Synechococcus sp. WH 8109] Length = 455 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 9/182 (4%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIV 65 +TFF+ KD D +A++G N GKS+L+N G + +IV+ TTR + + Sbjct: 162 LTFFSP-KDQEGDEEEPIQMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSI 220 Query: 66 SEKESQIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 + +DT GI + + I S+ I+ +D+ LV+D+ + L Sbjct: 221 IRENRPWRLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRL 280 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHGCDD 177 I + ++++NK D V+ + A E+ +KL F++ M+ SA G + Sbjct: 281 AGRIEEDGRACVVVVNKWDAVEKDSHTMTAMEKELRSKLYFLDWAPMLFTSALTGQRVES 340 Query: 178 VL 179 + Sbjct: 341 IF 342 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G ++E ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + ++ A + ++VD + L + + + +L +NK Sbjct: 64 DDDSEFLPEIREQAALALEEASVALVIVDGQQGLTAADESIAEFLRSHRCPTLLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 C PE+ L A L E +SA G G ++L+ + + Sbjct: 122 CESPEQGLAMAGEFWSLGLGEP-HPISAIHGAGTGELLDQVLT 163 >gi|258516724|ref|YP_003192946.1| GTP-binding proten HflX [Desulfotomaculum acetoxidans DSM 771] gi|257780429|gb|ACV64323.1| GTP-binding proten HflX [Desulfotomaculum acetoxidans DSM 771] Length = 414 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL+N+ G+ V + T R ++ +I+ DT G Sbjct: 196 VVSLVGYTNAGKSTLLNKLTGSDVLVEDKLFATLDPTTRQVILPNNDEILVTDTVGFIQN 255 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILILNK 139 + R + + AD++ VVDS E + +L + + IL+LNK Sbjct: 256 LPHHLVAAFRATLEEVIEADLLLHVVDSTHPNCFEQYKAVQSVLSSLEVENKPSILVLNK 315 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D + L IA V +SA G G +L + L Sbjct: 316 ADGLPKPDLNLWINIAGTPV-----TAISALTGEGLPGLLETIAKNL 357 >gi|254490328|ref|ZP_05103517.1| tRNA modification GTPase TrmE [Methylophaga thiooxidans DMS010] gi|224464461|gb|EEF80721.1| tRNA modification GTPase TrmE [Methylophaga thiooxydans DMS010] Length = 419 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 16/185 (8%) Query: 14 DFVQDNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 D + ++R G V L G NAGKS+L N+ G +IVT TTR ++R + Sbjct: 169 DGIAGSARQGRLLREGISVVLAGQPNAGKSSLHNQLAGHDAAIVTDVAGTTRDVLREQIH 228 Query: 67 EKESQIVFLDTPGIFNAKDSYHKL-MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 + DT G+ A +L IR + + + AD + L++D + + +L + Sbjct: 229 LDGLPLRISDTAGLHEATSDIVELEGIRRTQNELAQADHILLIIDDSLGMTPQDNKILND 288 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 + L +I NKID ++ E E + +F+ SA G G + + +L Sbjct: 289 MPA-DKPLTVIRNKID-RSGHQIGETVEAGRQTIFL------SAKTGEGMELLRQHLFEA 340 Query: 186 LPLAP 190 + P Sbjct: 341 VGYHP 345 >gi|164657303|ref|XP_001729778.1| hypothetical protein MGL_3322 [Malassezia globosa CBS 7966] gi|159103671|gb|EDP42564.1| hypothetical protein MGL_3322 [Malassezia globosa CBS 7966] Length = 444 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL G NAGKS+L+NR V +IVT TTR ++ + ++ DT G+ ++ Sbjct: 187 IALYGRPNAGKSSLLNRLVRRDAAIVTPYAGTTRDVLEVCMELAGYRVTLADTAGVRASQ 246 Query: 85 DSYHKLMIRLSWSTIKHADIVCLV 108 D+ ++ + + + + AD+ LV Sbjct: 247 DAVEQIGVERTQAYVAEADMCVLV 270 >gi|115522411|ref|YP_779322.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisA53] gi|115516358|gb|ABJ04342.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisA53] Length = 482 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 18/165 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL+N+ +V+IV+ TTR ++ + + +DT GI ++ Sbjct: 250 VAIVGPPNVGKSTLMNQLARREVAIVSPHAGTTRDVIEVHLDLDGYPVTVIDTAGIRDSD 309 Query: 85 DSYHKLMIRLSWSTIKHADIVC-LVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC- 142 D + +R + + AD+V L+ D I + + + L+ NK+D Sbjct: 310 DPVEQEGVRRAQARAAEADLVLWLLADDQVAAPAAI--------ESDAPVWLVRNKVDLA 361 Query: 143 -----VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 VKP + LE A + + + +F +SA +G G D++ L Sbjct: 362 GAATGVKPAKNLE-ANLGQNVP--QPSFAISAKRGDGIADLVGAL 403 >gi|326801518|ref|YP_004319337.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21] gi|326552282|gb|ADZ80667.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21] Length = 456 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 18/180 (10%) Query: 15 FVQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 F Q N V +V G N GKSTL+N + + +IV+ TTR + ++ + Sbjct: 212 FEQGNVLKNGVPIVIAGKPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINIQGVSF 271 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV----DSHRELKVNIHDLLKEIAK 128 F+DT GI + +D + + +K A +V +V D+ E+ + + DL I Sbjct: 272 RFIDTAGIRDTEDIIEAKGVERTREKMKKARLVIYLVDPVDDAFEEVSIQVADL---ILL 328 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 R+ +L++NK D + P+ L Q E N VFI SA G G + + L + + L Sbjct: 329 RTP-FVLVINKKDLLSPDA-LAQYEPLNP-VFI------SAKSGDGVEALKEELLNQVSL 379 >gi|319407872|emb|CBI81525.1| tRNA modification GTPase [Bartonella sp. 1-1C] Length = 435 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + +VGA N+GKS+++NR G V+IV+ + TTR + + ++F DT G+ + Sbjct: 217 IVIVGAPNSGKSSILNRLSGRSVAIVSEEEGTTRDALEVRLVLSGLLVLFTDTAGLRKTE 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ L I + I AD+V V D + ++N + K S+ + + NK+D Sbjct: 277 NTIELLGIEKAKQHIVEADLVIFVYDMNNPQEIN-------LPKTSAEIWHVGNKLD 326 >gi|299538553|ref|ZP_07051836.1| GTP-binding protein EngA [Lysinibacillus fusiformis ZC1] gi|298726140|gb|EFI66732.1| GTP-binding protein EngA [Lysinibacillus fusiformis ZC1] Length = 436 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + I AD++ + + + + K + K ++L +NKID Sbjct: 65 DEPFLEQIRQQAEIAIDEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKID-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + E L F E + +S + G G D+L+ P Sbjct: 123 NPD-MREMIYDFYALGFGEP-WPISGSHGLGLGDLLDECAKHFP 164 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN F+G + IV++ TTR + + + V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNAFLGQERVIVSNIAGTTRDAIDTPYAYDGQEYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I+ +D+V +V+++ ++ + + +I+++NK D Sbjct: 239 IYETTEKYSVLRALRAIERSDVVLVVLNAEEGIQEQDKKIAGYAHEAGKAVIIVVNKWDA 298 Query: 143 VK 144 ++ Sbjct: 299 IE 300 >gi|254499341|ref|ZP_05112012.1| GTP-binding protein EngA [Legionella drancourtii LLAP12] gi|254351446|gb|EET10310.1| GTP-binding protein EngA [Legionella drancourtii LLAP12] Length = 468 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 54/120 (45%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G E + +DT GI Sbjct: 4 VIALVGRPNVGKSTLFNRLTKTQDALVADFPGLTRDRQYGQAQHNEKSYIVVDTGGIGVD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + LM + S + ADIV +VD L + + K S ++ L++NK + + Sbjct: 64 DIAVDSLMSKQSTIALNEADIVLFLVDGRSGLTGVDEKIANNLRKLSKKVHLVVNKTEGL 123 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 6/183 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A G N GKSTL+NR +G + +V TTR + E + + +DT G+ Sbjct: 177 IAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSIAIPFVRDEQRYILIDTAGVRRKS 236 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K + + IK +++ ++D++ + +LL I + L++ +NK D Sbjct: 237 RIDEKIEKFSVIKTLQAIKESNVCLQLLDANEGITDQDMNLLGFIIESGKALVIAVNKWD 296 Query: 142 CVKPE-RLLEQAEIANKLVF--IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 + E + + ++E++ +L F K +SA G G + + A +S ++ Sbjct: 297 GLDEEHKDMIKSELSRRLHFANFAKIRFISALHGSGVGTLFKDINEAYASAIQSFSTPRL 356 Query: 199 SDL 201 + L Sbjct: 357 TRL 359 >gi|226950509|ref|YP_002805600.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226840867|gb|ACO83533.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 594 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 27/210 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ--------TTRSIVRGIVSEKESQIVFL- 75 V+LVG TNAGKSTL N+ ++ +K + T I +S ++I+ L Sbjct: 364 VSLVGYTNAGKSTLRNKLCDTGIANAQNKEKVFEADMLFATLDITTRAISLPNNEIITLT 423 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 DT G + H+L+ + + + ++D++ V+D + +++ ++++L+E+ Sbjct: 424 DTVGF--VRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDA-VNNVLEELGT 480 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + ++IL+ NKID V ERL +K EK +SA G +D+L + TLP Sbjct: 481 ENKQIILVFNKIDKVSMERL---NYFRDKFKD-EKVIEISARLGINLEDLLKLIEETLPY 536 Query: 189 ----APWVYSADQISDLPMFHFTAEITREK 214 ++ D+ + H ++I E+ Sbjct: 537 KLAEVEYIIPYDKQKTVAFLHRNSKIMEEE 566 >gi|46581638|ref|YP_012446.1| GTP-binding protein HflX [Desulfovibrio vulgaris str. Hildenborough] gi|46451061|gb|AAS97706.1| GTP-binding protein HflX [Desulfovibrio vulgaris str. Hildenborough] gi|311235280|gb|ADP88134.1| GTP-binding proten HflX [Desulfovibrio vulgaris RCH1] Length = 547 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +LVG TNAGKSTL+N A+V T R + +E +++ DT G Sbjct: 333 ASLVGYTNAGKSTLLNALTNAEVLAENKLFATLDPTTRRLRFPEERELILADTVGFIRNL 392 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVN---IHDLLKEIAKRSSRLILILNKI 140 R + ++ AD++ V D+ H EL + D+L E+ +L+LNK Sbjct: 393 PKELVEAFRATLEELEAADLLIHVADAGHPELDRQLRAVEDILVEMEMHDIPRLLVLNKW 452 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 D V PE L E +A+ + V+A + G D + + + S Sbjct: 453 DTV-PEELRETLLLAHP-----EAIPVAALQREGLDALAHGIAS 490 >gi|15676748|ref|NP_273893.1| GTP-binding protein EngA [Neisseria meningitidis MC58] gi|26006741|sp|Q9JZY1|DER_NEIMB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|7226088|gb|AAF41263.1| essential GTPase [Neisseria meningitidis MC58] gi|316984259|gb|EFV63235.1| small GTP-binding domain protein [Neisseria meningitidis H44/76] gi|325140003|gb|EGC62532.1| GTP-binding protein [Neisseria meningitidis CU385] gi|325200471|gb|ADY95926.1| GTP-binding protein [Neisseria meningitidis H44/76] Length = 485 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 ++R A++G N GKSTLVN +G + I TTR + I E+E + +DT Sbjct: 172 DARHPVFAVIGRPNVGKSTLVNAILGEERVITFDMAGTTRDSIH-IDFEREGKPFTIIDT 230 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 231 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 290 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + +NK D + ER + + +I KL F++ K +SA K G D + + + + Sbjct: 291 VAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGIDGLFDSIQAA 344 Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD L Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGL 96 >gi|27364695|ref|NP_760223.1| GTPase HflX [Vibrio vulnificus CMCP6] gi|37681254|ref|NP_935863.1| putative GTPase HflX [Vibrio vulnificus YJ016] gi|320155088|ref|YP_004187467.1| GTP-binding protein HflX [Vibrio vulnificus MO6-24/O] gi|27360840|gb|AAO09750.1| GTP-binding proten HflX [Vibrio vulnificus CMCP6] gi|37200005|dbj|BAC95834.1| GTP-binding protein HflX [Vibrio vulnificus YJ016] gi|319930400|gb|ADV85264.1| GTP-binding protein HflX [Vibrio vulnificus MO6-24/O] Length = 429 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIELADVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE +H +L+EI ++++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVHVVLEEINAHEIPTLVVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ +R I + + +SA G G D + L L Sbjct: 317 NKIDNMEDQR----PRIERDDEGVPQVVWLSAMDGQGIDLLFEALTERL 361 >gi|292806562|gb|ADE42411.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L N +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALNL 168 >gi|307328928|ref|ZP_07608097.1| ribosome-associated GTPase EngA [Streptomyces violaceusniger Tu 4113] gi|306885438|gb|EFN16455.1| ribosome-associated GTPase EngA [Streptomyces violaceusniger Tu 4113] Length = 487 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V + TR V + +DT G Sbjct: 51 VLAVVGRPNVGKSTLVNRILGRREAVVEDRPGVTRDRVTYEAEWSGRRFKVVDTGGWEQD 110 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I+ AD V VVD+ ++K + + ++L NK+D Sbjct: 111 VLGLDASVAAQAEFAIEAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKVDGP 170 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E A + L E VSA G G D+L+ + LP AP Sbjct: 171 SGE---ADAAMLWSLGLGEP-HPVSALHGRGTGDMLDAVLDALPEAP 213 Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +ALVG N GKS+L+N+ + +V TTR V I+ + F+DT GI Sbjct: 227 IALVGRPNVGKSSLLNKVANEERVVVNELAGTTRDPVDEIIELGGTTWKFVDTAGIRRRV 286 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++D+ + V ++ + L++ N Sbjct: 287 HLQEGADYYASLR---TAAAVEKAEVAVVLIDASESISVQDQRIITMAVEAGRALVIAYN 343 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 344 KWDTLDEER 352 >gi|149916653|ref|ZP_01905155.1| GTP-binding protein [Plesiocystis pacifica SIR-1] gi|149822370|gb|EDM81759.1| GTP-binding protein [Plesiocystis pacifica SIR-1] Length = 465 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%) Query: 17 QDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 Q R+ C VALVG TNAGK++L+N A++S +T + R + + ++ Sbjct: 231 QREGRASCGRVALVGYTNAGKTSLMNALTQAELSARDMPFETLDTTTRSL-TRHGGDVII 289 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRS 130 DT G + + I+ A +VC+VVD S E +++ H LL+ + + Sbjct: 290 SDTVGFIRRLPQRLLASFETTLAEIREASVVCVVVDLSDPEWDMHLDTTHALLERLGAGA 349 Query: 131 SRLILILNKIDCVKP 145 + + NK+D + P Sbjct: 350 LARVYVFNKLDKLAP 364 >gi|148273200|ref|YP_001222761.1| putative GTP-binding protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831130|emb|CAN02082.1| putative GTP-binding protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 521 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 14/177 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D + VA+VG TNAGKS+L+NR A V + T + VR +++ D Sbjct: 293 RDRNSVPSVAIVGYTNAGKSSLLNRVTKAGVLVENALFATLDATVRKTETDQGQLYTLAD 352 Query: 77 TPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVN---IHDLLKEIAKRS 130 T G ++ H+L+ R + + +D++ VVD SH + +H+++ E+ S Sbjct: 353 TVGFV--RNLPHQLVEAFRSTLEELADSDVLVHVVDASHPDPAAQLATVHEVIAEVDASS 410 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 I++ NK D + +A + VF VSA G G +++ + LP Sbjct: 411 IPEIVVFNKSDLASDGDRVVLRGLAPQGVF------VSARTGEGVEELRRRIAELLP 461 >gi|319948153|ref|ZP_08022315.1| GTP-binding proten HflX [Dietzia cinnamea P4] gi|319438182|gb|EFV93140.1| GTP-binding proten HflX [Dietzia cinnamea P4] Length = 483 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 14/167 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G TNAGKS+L+NR GA V + T R +VF DT G Sbjct: 253 SIAIAGYTNAGKSSLLNRITGAGVLVQNALFATLDPTTRRADLPDGRSVVFTDTVGFVRH 312 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLIL 135 + R + + ++++ VVD + I+++++E R ++ Sbjct: 313 LPTQLVEAFRSTLEEVVDSELLLHVVDGSDAFPLRQIEAVRKVINEVVEEQNAERPRELV 372 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 ++NKID P L E VF VSA G G D++L + Sbjct: 373 VINKIDAADPVVLTELHHALPDAVF------VSAATGQGVDELLERI 413 >gi|294084362|ref|YP_003551120.1| GTPase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663935|gb|ADE39036.1| GTPase [Candidatus Puniceispirillum marinum IMCC1322] Length = 430 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 13/174 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 +D S + +AL+G TNAGKSTL N GA V T +RG+ + V D Sbjct: 192 RDRSETPTLALIGYTNAGKSTLFNMLTGADVLSKDMLFATLDPTMRGMKLPSGRRAVLAD 251 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIA----K 128 T G + + + + + ADI+ V D+ E ++ +L+E+ Sbjct: 252 TVGFISQLPTELVEAFKSTLEEVVEADILVHVHDASSPMVAEEYADVCQILEELGLDAEM 311 Query: 129 RSSRLILILN---KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 ++ R+I ILN KID + + E E LV VSA G G DD L Sbjct: 312 QAERVIHILNKSDKIDDMAGDMAGETREYLENLV--GNGVFVSALTGAGIDDAL 363 >gi|298291760|ref|YP_003693699.1| GTP-binding proten HflX [Starkeya novella DSM 506] gi|296928271|gb|ADH89080.1| GTP-binding proten HflX [Starkeya novella DSM 506] Length = 463 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 7/170 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR + V T +R + +I+ DT G + Sbjct: 227 VVALVGYTNAGKSTLFNRLTRSDVMAQDLLFATLDPTLRAVQLPSGERIILSDTVGFISD 286 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA------KRSSRLILI 136 + R + + AD++ V D SH + + HD+ ++ + R+I + Sbjct: 287 LPTQLVAAFRATLEEVIEADLILHVRDMSHEDAEAQAHDVEAVLSDLDIDPEDDHRVIEV 346 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + E A + + VSA G G D +L + L Sbjct: 347 WNKIDRLDEEGRARLFNTAERREGDARPIPVSALTGEGVDALLVAIGQRL 396 >gi|188997222|ref|YP_001931473.1| GTP-binding protein HflX [Sulfurihydrogenibium sp. YO3AOP1] gi|188932289|gb|ACD66919.1| GTP-binding protein HflX [Sulfurihydrogenibium sp. YO3AOP1] Length = 372 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 15/179 (8%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTH---KVQTTRSIVRGIVSE 67 E + +DN V+LVG TNAGKS+L+ R V I + T S++ + Sbjct: 182 EQRKSREDNPNILKVSLVGYTNAGKSSLLKRLTKRDVFISDQLFATLDTKTSLI--YFPD 239 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLL 123 + +++ DT G S + I+ AD++ V+D + + K + ++L Sbjct: 240 IKKKVLITDTVGFVEDMPSEIMDAFMTTLKEIEDADVILHVIDISDKNCMKKKTTVENVL 299 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K++ + +I + NKID V P + L + ++ +E T +SA KG D + + L Sbjct: 300 KQLKLQDKPIITVFNKIDKVVPSKDLIEEDV------MENTITISAEKGWNIDKLFDIL 352 >gi|169824551|ref|YP_001692162.1| GTP-binding protein [Finegoldia magna ATCC 29328] gi|238687753|sp|B0S1N2|DER_FINM2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167831356|dbj|BAG08272.1| GTP-binding protein [Finegoldia magna ATCC 29328] Length = 438 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G N GKS+L+N + + IVT TTR + ++ K ++ +F+DT G+ K Sbjct: 179 VCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYIFIDTAGLRKRK 238 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + S I +DI L++D+ + +L + +I+++NK D Sbjct: 239 KIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSEQDTKILGYAHDQGKAMIILVNKWD 298 Query: 142 CVKPE 146 V+ + Sbjct: 299 LVEKQ 303 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 15/182 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N+ + +++I TR + + +DT G+ Sbjct: 5 VVAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPK 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNK 139 + + K + + + I+ AD++ +VD + + + + D+L+ K +IL++NK Sbjct: 65 SNEIITKNIKKQTELAIETADVILFMVDGKQGITPIDMEVADMLRRTKK---SVILVVNK 121 Query: 140 IDCVKPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID +K +Q + + L F E F +SA+ G D+L + S S D Sbjct: 122 IDHIK-----QQDNVYDFYNLGFYE-IFPISASNSMGLGDLLEAVVSKFDDNSNTESDDD 175 Query: 198 IS 199 I+ Sbjct: 176 IT 177 >gi|153941369|ref|YP_001392358.1| GTP-binding protein [Clostridium botulinum F str. Langeland] gi|152937265|gb|ABS42763.1| GTP-binding protein [Clostridium botulinum F str. Langeland] gi|295320349|gb|ADG00727.1| GTP-binding protein [Clostridium botulinum F str. 230613] Length = 594 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 27/210 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ--------TTRSIVRGIVSEKESQIVFL- 75 V+LVG TNAGKSTL N+ ++ +K + T I +S ++I+ L Sbjct: 364 VSLVGYTNAGKSTLRNKLCDTGIANAQNKEKVFEADMLFATLDITTRAISLPNNEIITLT 423 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 DT G + H+L+ + + + ++D++ V+D + +++ ++++L+E+ Sbjct: 424 DTVGF--VRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDA-VNNVLEELGT 480 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + ++IL+ NKID V ERL +K EK +SA G +D+L + TLP Sbjct: 481 ENKQIILVFNKIDKVSMERL---NYFRDKFKD-EKVIEISARLGINLEDLLKLIEETLPY 536 Query: 189 ----APWVYSADQISDLPMFHFTAEITREK 214 ++ D+ + H ++I E+ Sbjct: 537 KLAEVEYIIPYDKQKTVAFLHRNSKIIEEE 566 >gi|18977867|ref|NP_579224.1| gtp1/obg family GTP-binding protein [Pyrococcus furiosus DSM 3638] gi|18893625|gb|AAL81619.1| GTP-binding protein, gtp1/obg family [Pyrococcus furiosus DSM 3638] Length = 357 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 15/206 (7%) Query: 6 ITFFNEHKDFVQD----NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 + + N+ ++ ++D + V + G N GKSTL+ AK I ++ TT+ I Sbjct: 147 LRYLNKAREVLKDLPVIDLEVPTVVIAGHPNVGKSTLLKALTTAKPEIASYPF-TTKGIN 205 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH-ADIVCLVVDSHRELKVNIH 120 G + + +DTPG+ + S + + + +KH ++ + D I Sbjct: 206 VGQFEDGYFKYQVIDTPGLLDRPLSERNEIEKQAILALKHLGKLIIYIFDPSEYCGFPIE 265 Query: 121 D---LLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 + L +EI + + I++LNKID K E++ + E + K +SA KG G Sbjct: 266 EQMHLFEEIYEEFKEFPFIVVLNKIDVAKEEQVKKVEEFLERKGL--KPIKISALKGEGV 323 Query: 176 DDVLNYLCSTL-PLAPWVYSADQISD 200 +++ + L PLA + Y+ +I + Sbjct: 324 EEIRQIIIEKLRPLA-YEYAKKKIEE 348 >gi|117923594|ref|YP_864211.1| GTP-binding protein, HSR1-related [Magnetococcus sp. MC-1] gi|117607350|gb|ABK42805.1| GTP-binding protein, HSR1-related protein [Magnetococcus sp. MC-1] Length = 432 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 18/197 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N A V T +R + +I+ DT G Sbjct: 203 TVALVGYTNAGKSTLFNLLTRAGVLAEDKLFATLDPTMRAVDLPDGGRILLSDTVGFI-- 260 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKV---NIHDLLKEIAKRSSRLILIL 137 + H+L+ + + + AD++ VVD S E + +++ +L+E+ + +R + + Sbjct: 261 RQLPHQLVAAFKATLEEVMSADMLLHVVDLSDPEWERYVESVNGVLQELEVQHTRTLTVY 320 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD- 196 NKID ++ +LE+ E+A T VSA G G + +L+ L + A Y Sbjct: 321 NKIDRLESRGILER-ELARG-----DTIGVSAQTGEGVEPLLSELRRAVGRAMLRYEVIL 374 Query: 197 QISD---LPMFHFTAEI 210 +SD L FH A + Sbjct: 375 PVSDGRWLAKFHAEASV 391 >gi|317054820|ref|YP_004103287.1| tRNA modification GTPase TrmE [Ruminococcus albus 7] gi|315447089|gb|ADU20653.1| tRNA modification GTPase TrmE [Ruminococcus albus 7] Length = 455 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFNAK 84 + G N GKSTL+N +G SIVT TTR ++ S K ++VF DT GI + + Sbjct: 223 IAGKPNVGKSTLMNLLLGYDRSIVTEVAGTTRDVIE--ESAKLGELVFRLSDTAGIRDTE 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K+ + ++ + V V D+ + LL+++ R +++LNK D Sbjct: 281 DRVEKIGVEMAEKRLDECMFVIEVFDTSVRPDEDDIALLEKVKASGKRSLIVLNKSD 337 >gi|197104999|ref|YP_002130376.1| GTP-binding protein [Phenylobacterium zucineum HLK1] gi|196478419|gb|ACG77947.1| GTP-binding protein [Phenylobacterium zucineum HLK1] Length = 509 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG NAGKSTLVNR +G + + TR + + I +DT G+ Sbjct: 182 IAIVGRPNAGKSTLVNRLIGEDRLLTGPEAGITRDAIPVDWEWEGRPIRLVDTAGLRRKA 241 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSR-LILILNK 139 ++ KL + + I A++V LV+D+ + I DL + ++ +R R L+ +L K Sbjct: 242 KVQEKLEKLSTQDTIRAITFAEVVLLVMDATHPFE--IQDLQIADLCEREGRGLVFVLTK 299 Query: 140 IDCV-KPERLL-EQAEIANKLVFIEKT---FMVSATKGHGCDDVL 179 D V +P+ +L E E A +L+ K +SA G G D ++ Sbjct: 300 WDLVEEPQAVLAEITEEAYRLLPQVKGSPIVALSAETGRGMDRLM 344 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 7/162 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR G K++IV + TR G + + +DT G + Sbjct: 5 LAIVGRPNVGKSTLFNRLAGRKLAIVDDRPGVTRDRRFGTGRLGDLDLELIDTAGFEDVT 64 Query: 85 D-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKIDC 142 D S M + + D+ V+DS RE + EI KR +IL NK + Sbjct: 65 DESLEARMRAQTERAVDECDVALFVIDS-REGVTPADRIFAEILRKRDKPVILAANKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCS 184 R E + + + + +SA G G D+ L + Sbjct: 124 ----RQGEAGILDAWGLGLGEPVPISAEHGEGMADLYAALAA 161 >gi|308801613|ref|XP_003078120.1| translation initiation factor IF-2, chloroplast, putative (ISS) [Ostreococcus tauri] gi|116056571|emb|CAL52860.1| translation initiation factor IF-2, chloroplast, putative (ISS) [Ostreococcus tauri] Length = 404 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 25/205 (12%) Query: 6 ITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVN-----RFVGAKVSIVTHKVQTTRSI 60 +T F DF +R+ V ++G + GK++L++ + + +T + + Sbjct: 92 VTQFMSEDDFDFLTARAPVVTIMGHVDHGKTSLLDYIHKSKVAAGEAGGITQGIGAYQ-- 149 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 V +V ++E +I FLDTPG H+ + + DI ++V + ++ Sbjct: 150 VSTMVGDEEKEITFLDTPG--------HEAFSAMRARGARVTDIAIIIVAADDGMRPQTE 201 Query: 121 DLLKEIAKRSSRLILILNKID--CVKPERLLEQAEIANKLVFIEK-----TFM-VSATKG 172 + + +I+ +NKID P+R+ + E++ V E+ FM +SA G Sbjct: 202 EAVSHARAADVPIIVAVNKIDKEGANPDRVRD--EMSRIGVISEEWGGDIPFMPISAKTG 259 Query: 173 HGCDDVLNYLCSTLPLAPWVYSADQ 197 G DD+L + T L V + D+ Sbjct: 260 EGIDDLLETISLTAELCELVANPDR 284 >gi|297829768|ref|XP_002882766.1| EMB2738 [Arabidopsis lyrata subsp. lyrata] gi|297328606|gb|EFH59025.1| EMB2738 [Arabidopsis lyrata subsp. lyrata] Length = 661 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 38/195 (19%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR VG +IV + TR + G + + V +DT G+ Sbjct: 159 VAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTVS 218 Query: 85 DSYHKLMIRLSWST------------------------------IKHADIVCLVVDSH-- 112 S +M L+ ST + + ++ VVD Sbjct: 219 KSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQAG 278 Query: 113 -RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATK 171 V I D L++ +IL +NK C P + L QA L F +SA Sbjct: 279 SSGADVEIADWLRKYYSHKY-IILAVNK--CESPRKGLMQASEFWSLGFTP--IPISALS 333 Query: 172 GHGCDDVLNYLCSTL 186 G G ++L+ +CS L Sbjct: 334 GTGTGELLDLVCSGL 348 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 36/170 (21%), Positives = 81/170 (47%), Gaps = 15/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI-- 80 +A++G N GKS+++N V +IV+ TTR + + + + +DT GI Sbjct: 368 AIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRK 427 Query: 81 ----FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 ++ + + + ++ I+ +D+V LV+++ + + + I + +++ Sbjct: 428 KSSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVV 487 Query: 137 LNKIDCVKPERLLEQA-----EIANKLVFIEKTFMV--SATKGHGCDDVL 179 +NK D + P + E A ++ KL ++ +V +A GH D+++ Sbjct: 488 VNKWDTI-PNKNQETAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNIV 536 >gi|302518233|ref|ZP_07270575.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78] gi|302427128|gb|EFK98943.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78] Length = 488 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVNR +G + ++V + TR V + +DT G Sbjct: 52 LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 111 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + I+ +D V VVD+ +++ + K ++L NK+D Sbjct: 112 LGIDASVAAQAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDG-- 169 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P + A + + + + + VSA G G D+L+ + LP AP Sbjct: 170 PSGEADAAMLWS--LGLGEPHPVSALHGRGTGDMLDAVLEALPDAP 213 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VAL+G N GKS+L+N+ G +V + TTR V ++ F+DT GI Sbjct: 228 VALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 287 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++D + V +L L+L N Sbjct: 288 HLQQGADYYASLR---TAAAVEKAEVAVVLIDGADSISVQDQRILTMAVDAGRALVLAYN 344 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 345 KWDTLDEER 353 >gi|305681126|ref|ZP_07403933.1| GTP-binding protein HflX [Corynebacterium matruchotii ATCC 14266] gi|305659331|gb|EFM48831.1| GTP-binding protein HflX [Corynebacterium matruchotii ATCC 14266] Length = 559 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 14/162 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G TNAGKS+L+N GA V + T R +VF DT G Sbjct: 333 IAIAGYTNAGKSSLINAITGAGVLVEDALFATLDPTTRRAELADGRTVVFTDTVGFVRHL 392 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLILI 136 + R + + AD+V VVD + I ++++E + + I++ Sbjct: 393 PTQLVEAFRSTLEEVVGADLVLHVVDGSDPFPLKQIAAVNKVIGEIVQEYGETAPPEIIV 452 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +NKID P L+E + +VF VSA G G ++ Sbjct: 453 VNKIDAADPLVLVELRHAVDDVVF------VSAHTGEGISEL 488 >gi|163761004|ref|ZP_02168082.1| GTP-binding protein EngA [Hoeflea phototrophica DFL-43] gi|162281785|gb|EDQ32078.1| GTP-binding protein EngA [Hoeflea phototrophica DFL-43] Length = 499 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 11/150 (7%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ VA+VG NAGKSTL+N+F+G + + TR + K +I DT Sbjct: 199 DETKPLRVAIVGRPNAGKSTLINQFLGQDRLLTGPEAGITRDSIAVDFEWKGRKIKLFDT 258 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ ++ KL + + I+ A++V +V DS + + I DL + + Sbjct: 259 AGLRRKARVQEKLEKLSVADALRAIRFAEVVVIVFDSTIPFEKQDLQIADL---VVREGR 315 Query: 132 RLILILNKIDCV--KPERLLEQAEIANKLV 159 ++ NK D + + E+L E E+ ++L+ Sbjct: 316 APVIAFNKWDLIDNRQEKLAELREMTDRLL 345 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A+VG N GKSTL NR G K+++V TR G + + +DT G+ + Sbjct: 4 TLAIVGRPNVGKSTLFNRLAGRKLALVDDTPGVTRDRRPGDARLVDLRFTMIDTAGLEVS 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ M + + I AD ++D+ L L + KR ++L+ NK + Sbjct: 64 GPDTLEGRMRAQTEAAIDEADGAMFLIDAKAGLTPADELLADILRKRGKPVVLVANKAEA 123 >gi|119025833|ref|YP_909678.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium adolescentis ATCC 15703] gi|118765417|dbj|BAF39596.1| GTP-binding protein engA [Bifidobacterium adolescentis ATCC 15703] Length = 675 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 239 GVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLVDTGGWET 298 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + ++ AD V LVVD L ++K + + L +NK+D Sbjct: 299 DVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTLAVNKVDD 358 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + E L AE + + + + +SA G G ++L+ +L A Sbjct: 359 RESEYL--TAEFWK--MGLGEPYGISAMHGRGIGELLDAALDSLKKA 401 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 24/181 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V +V+ +F+DT GI K Sbjct: 416 VALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGI---K 472 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ D+ + + ++ + ++L+ N Sbjct: 473 RRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFN 532 Query: 139 KIDCV------KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL--PLAP 190 K D + + ERL + N++ + ++ + + T H N L + + LA Sbjct: 533 KWDLMDEFDRQRMERLWKTE--FNRVTWAQRVNLSAKTGWH-----TNRLANAMRGALAS 585 Query: 191 W 191 W Sbjct: 586 W 586 >gi|323487692|ref|ZP_08092950.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2] gi|323398426|gb|EGA91214.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2] Length = 461 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 6/135 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N V +IVT TTR I+ V+ + + +DT G Sbjct: 221 REGLSTVILGRPNVGKSSLLNSLVQENKAIVTEIAGTTRDIIEEYVNVRGVPLRLVDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ V++ L +LL E K I+++NK Sbjct: 281 IRETEDIVERIGVERSRKVLKEADLILYVLNYAEALTPE-DELLFETVK-DMDYIVVINK 338 Query: 140 IDCVKPERL-LEQAE 153 D P+++ LEQ + Sbjct: 339 TDL--PQKIDLEQVQ 351 >gi|320529134|ref|ZP_08030226.1| ribosome-associated GTPase EngA [Selenomonas artemidis F0399] gi|320138764|gb|EFW30654.1| ribosome-associated GTPase EngA [Selenomonas artemidis F0399] Length = 441 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 1/127 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N+ +VSIV TR + + +DT GI F+ Sbjct: 5 IVAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYMDAEWLNHEFTIIDTGGIEFD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + M + ++ AD++ +VD L + ++ + + + + +IL +NKID Sbjct: 65 ESDHILRSMRSQAELAMEEADVILFLVDGRAGLTASDEEVGRLLRRTNKPVILAVNKIDS 124 Query: 143 VKPERLL 149 + E L+ Sbjct: 125 FERESLI 131 Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+LVNR +G + IV+ TTR + + ++ + +DT G+ Sbjct: 178 AIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTRDGAKYLLIDTAGMRRK 237 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + S I A +V +V+++ + + + + +I+++NK Sbjct: 238 GKITLPVERYSVMRSLRAIDRAGVVLMVINAAEGILEQDTKIAGYVHESGKGVIIVVNKW 297 Query: 141 DCVKPER 147 D PE+ Sbjct: 298 DIF-PEK 303 >gi|289670462|ref|ZP_06491537.1| GTP-binding protein EngA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 465 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ E Q + +DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 ++ R + + AD+V VVD RE ++ D +L + K + +L++NKID Sbjct: 65 EEGLAGATARQARAAAGEADLVLFVVDG-REGASSLDDEILAWLRKLARPTVLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E A +SA G D++L + + LP Sbjct: 124 TDEETV--RSEFAR--YGFSDVVALSAAHRQGIDELLEEVGARLP 164 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDGRQYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + QAE ++ KL F+ + +SA G G ++ + A +S + Sbjct: 301 G-QSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGMRELFQAIHRAHASATHEFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|221640727|ref|YP_002526989.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides KD131] gi|221161508|gb|ACM02488.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides KD131] Length = 428 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 45/86 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VGA NAGKSTL+N + +I + TTR ++ + + FLDT G+ + Sbjct: 215 VAIVGAPNAGKSTLLNALARREAAITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTS 274 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 D L I + + K AD+ ++D Sbjct: 275 DLVESLGIERAVTRAKAADLRVFLLD 300 >gi|307353076|ref|YP_003894127.1| small GTP-binding protein [Methanoplanus petrolearius DSM 11571] gi|307156309|gb|ADN35689.1| small GTP-binding protein [Methanoplanus petrolearius DSM 11571] Length = 371 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S G V LVG + GKSTL+N+ G S TT ++V G + K + I LD PG Sbjct: 61 SGDGTVVLVGFPSVGKSTLLNKLTGNTDSETASYAFTTLTVVPGAMEHKGANIQILDIPG 120 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 + A + K + + ++ AD++ L+ D + E +N+ L+ E+ R+ Sbjct: 121 LI-AGAAMGKGRGKEVIAVVRGADLILLLGDVYNEKHINV--LINELYDAGIRI 171 >gi|257051913|ref|YP_003129746.1| GTP-binding proten HflX [Halorhabdus utahensis DSM 12940] gi|256690676|gb|ACV11013.1| GTP-binding proten HflX [Halorhabdus utahensis DSM 12940] Length = 439 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 90/208 (43%), Gaps = 28/208 (13%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRF-----VGAKVSIVTHKVQT 56 E+ +I +EH+ + S VAL G TNAGKSTL+ R V + +T Sbjct: 173 ELEKIERTDEHRREQRRESGFDLVALAGYTNAGKSTLLRRLAEDLDVDENEDVHPDLDET 232 Query: 57 TRSIVR-----GIVSEKES----QIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIV 105 S R G + + ++ DT G + D H L+ + + ++ AD+V Sbjct: 233 AESEDRLFTTLGTTTRRADFDRRDVLVTDTVGFIS--DLPHWLVESFKSTLGSVYQADLV 290 Query: 106 CLVVD------SHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLV 159 LVVD S RE V HD L E + + ++ +LNKID V+ L + E + L Sbjct: 291 LLVVDVGESVESIREKLVTAHDTLYE--RNEAPILTVLNKIDTVEAAELDRKREALSALA 348 Query: 160 FIEKTFMVSATKGHGCDDVLNYLCSTLP 187 VSA G D + + +LP Sbjct: 349 --PNPVAVSARTGENVDALRERIDESLP 374 >gi|193624724|ref|XP_001945984.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Acyrthosiphon pisum] Length = 485 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 6/137 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++GA N GKS+L+N + +IVT TTR ++ + ++ +DT GI + Sbjct: 239 VAIIGAPNTGKSSLLNSLCSREAAIVTELPGTTRDPIQVPLDVSGYSVLLIDTAGIRSQT 298 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-----LKEIAKRSSRLILILN 138 D L I+ S + AD+V LV D+ L V+ DL ++ + + ++ +N Sbjct: 299 VDLIEGLGIKKSKVQAESADMVILVTDAQCLLDVDNIDLWLKKHVENLKVQCDNCLVYVN 358 Query: 139 KIDCVKPERLLEQAEIA 155 KID + ++++ +++ Sbjct: 359 KIDNLSDDQVIRLKKVS 375 >gi|219847583|ref|YP_002462016.1| tRNA modification GTPase TrmE [Chloroflexus aggregans DSM 9485] gi|219541842|gb|ACL23580.1| tRNA modification GTPase TrmE [Chloroflexus aggregans DSM 9485] Length = 452 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 8/167 (4%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VALVG N GKS+L+N + + +IVT TTR + + +V +DT G Sbjct: 212 RNGARVALVGRPNVGKSSLLNALLRVERAIVTPIPGTTRDTLEETANLAGVPVVLIDTAG 271 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + N+ D ++ + + + + AD+ LV D+ + L +L A + + I++ NK Sbjct: 272 MRNSTDPVEQIGVERAAAALASADLALLVFDAQQPLTDEDEAMLTTTADKPT--IIVWNK 329 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 C P L A V + SA GHG D++ + +TL Sbjct: 330 --CDDPAILPPTAPEHPHRVAVAA---CSARYGHGIDELAKTIATTL 371 >gi|322807381|emb|CBZ04955.1| GTP-binding protein HflX [Clostridium botulinum H04402 065] Length = 594 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 27/210 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ--------TTRSIVRGIVSEKESQIVFL- 75 V+LVG TNAGKSTL N+ ++ +K + T I +S ++I+ L Sbjct: 364 VSLVGYTNAGKSTLRNKLCDTGIANAQNKEKVFEADMLFATLDITTRAISLPNNEIITLT 423 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 DT G + H+L+ + + + ++D++ V+D + +++ ++++L+E+ Sbjct: 424 DTVGF--VRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDA-VNNVLEELGT 480 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + ++IL+ NKID V ERL +K EK +SA G +D+L + TLP Sbjct: 481 ENKQIILVFNKIDKVSMERL---NYFRDKFKD-EKVIEISARLGINLEDLLKLIEETLPY 536 Query: 189 ----APWVYSADQISDLPMFHFTAEITREK 214 ++ D+ + H ++I E+ Sbjct: 537 KLAEVEYIIPYDKQKTVAFLHRNSKIIEEE 566 >gi|302789099|ref|XP_002976318.1| hypothetical protein SELMODRAFT_443180 [Selaginella moellendorffii] gi|300155948|gb|EFJ22578.1| hypothetical protein SELMODRAFT_443180 [Selaginella moellendorffii] Length = 432 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 9 FNEHKDFVQD--------------NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKV 54 F+EH +++D N R + LVGA N GKS+LV K + + Sbjct: 215 FHEHVQYLEDLKETAKTLRKLPVVNPRDPILCLVGAPNVGKSSLVRVLSTGKPEVCNYPF 274 Query: 55 QTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE 114 TTR+I G + + DTPG+ N D+ M +L+ + + + L V Sbjct: 275 -TTRAISMGHIMDYAFSYQVTDTPGLLNRIDADRNDMEKLTLAALAYLPTAVLYV----- 328 Query: 115 LKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHG 174 HDL E I +I P R ++ +K +E + + G Sbjct: 329 -----HDLTGECGTSVQDQFYIYKEIRGRFPSR--PWIDVVSKADLLE---VPALRDGEE 378 Query: 175 CDDVLNYLCSTLPLAPWV 192 D+++ Y P A WV Sbjct: 379 VDEIVRYKTCGPPGALWV 396 >gi|168179574|ref|ZP_02614238.1| GTP-binding protein [Clostridium botulinum NCTC 2916] gi|182669723|gb|EDT81699.1| GTP-binding protein [Clostridium botulinum NCTC 2916] Length = 594 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 27/210 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ--------TTRSIVRGIVSEKESQIVFL- 75 V+LVG TNAGKSTL N+ ++ +K + T I +S ++I+ L Sbjct: 364 VSLVGYTNAGKSTLRNKLCDTGIANAQNKEKVFEADMLFATLDITTRAISLPNNEIITLT 423 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAK 128 DT G + H+L+ + + + ++D++ V+D + +++ ++++L+E+ Sbjct: 424 DTVGF--VRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDA-VNNVLEELGT 480 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + ++IL+ NKID V ERL +K EK +SA G +D+L + TLP Sbjct: 481 ENKQIILVFNKIDKVSMERL---NYFRDKFKD-EKVIEISARLGINLEDLLKLIEETLPY 536 Query: 189 ----APWVYSADQISDLPMFHFTAEITREK 214 ++ D+ + H ++I E+ Sbjct: 537 KLAEVEYIIPYDKQKTVAFLHRNSKIIEEE 566 >gi|54303077|ref|YP_133070.1| hypothetical protein PBPRB1403 [Photobacterium profundum SS9] gi|46916505|emb|CAG23270.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 445 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CVALVG TNAGKS+++ G++V + T + VR + + +I+ DT G Sbjct: 226 CVALVGYTNAGKSSMMRAITGSEVLVEDKLFATLDTTVRALYPVTQPRILVSDTVGFI-- 283 Query: 84 KDSYHKLMIRL--SWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 K H L+ + + A ++ VVD+ +L V +H++L+E+ ++ +L+ Sbjct: 284 KKLPHDLVASFHSTLAEAHDASLLLYVVDASDSSFRTQLDV-VHEVLEEVGVEGAKKLLV 342 Query: 137 LNKID 141 LNK D Sbjct: 343 LNKSD 347 >gi|114568076|ref|YP_755230.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317083|sp|Q0ATU5|MNME_SYNWW RecName: Full=tRNA modification GTPase mnmE gi|114339011|gb|ABI69859.1| tRNA modification GTPase trmE [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 459 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 4/130 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G N GKS+L+N + + +IVT TTR I+ ++ + + DT GI + + Sbjct: 224 VAICGKPNVGKSSLLNALLRKEKAIVTSIPGTTRDIIEDYINIRGIPVKLKDTAGIRSTE 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D ++ I S I AD+V ++D + + ++I K++ I+++NK D Sbjct: 284 DLVERIGIERSQEVISEADLVLFILDVGTGIDQEDRKIYEKIEKKNK--IVLVNKEDL-- 339 Query: 145 PERLLEQAEI 154 E+ + +AE+ Sbjct: 340 EEKNISEAEL 349 >gi|322379149|ref|ZP_08053545.1| tRNA modification GTPase TrmE [Helicobacter suis HS1] gi|321148412|gb|EFX42916.1| tRNA modification GTPase TrmE [Helicobacter suis HS1] Length = 455 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N GKS+L+N + + ++V+ TTR + ++S S + +DT GI + Sbjct: 220 LSIIGKPNVGKSSLLNALLLEERALVSEIAGTTRDTIEEVISLYGSSLKIIDTAGIRTSN 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKIDCV 143 D +L I S ++ +DI+ + D L +L+ + A + L +I NK DC Sbjct: 280 DPIERLGIAKSKQRMQESDIILALFDLSSPLDHQDQVILELLQANQDKILCVIFNKNDC- 338 Query: 144 KPERLLEQAEIA 155 P +L A +A Sbjct: 339 -PTKLDTTALLA 349 >gi|322381046|ref|ZP_08055074.1| tRNA modification GTPase TrmE [Helicobacter suis HS5] gi|321146516|gb|EFX41388.1| tRNA modification GTPase TrmE [Helicobacter suis HS5] Length = 455 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N GKS+L+N + + ++V+ TTR + ++S S + +DT GI + Sbjct: 220 LSIIGKPNVGKSSLLNALLLEERALVSEIAGTTRDTIEEVISLYGSSLKIIDTAGIRTSN 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKIDCV 143 D +L I S ++ +DI+ + D L +L+ + A + L +I NK DC Sbjct: 280 DPIERLGIAKSKQRMQESDIILALFDLSSPLDHQDQVILELLQANQDKILCVIFNKNDC- 338 Query: 144 KPERLLEQAEIA 155 P +L A +A Sbjct: 339 -PTKLDTTALLA 349 >gi|313123537|ref|YP_004033796.1| GTP-binding protein enga [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280100|gb|ADQ60819.1| GTP-binding protein engA [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684298|gb|EGD26471.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 435 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR + +V+IV + TR S Q +DT GI Sbjct: 5 IVAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGI-TW 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKID 141 +DS IR I+ AD++ ++ D+ + + ++ + + + R+ + +L+ +NK D Sbjct: 64 EDSTIDEEIRAQAEIAIEEADVIVMLADASQGV-TSLDERIAHLLYRADKPVLLAVNKAD 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE+ + + + + + VS + G G D+L+ + P Sbjct: 123 --NPEQRTDIYDFYS--LGLGDPIPVSGSHGTGIGDLLDEVVKNFP 164 Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 7/139 (5%) Query: 13 KDFVQDNSRS--GCVA--LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 K+F D ++ G ++ ++G N GKS++VNR +G + IV ++ TTR + + Sbjct: 161 KNFPADAEKTEEGVISFSVIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKD 220 Query: 69 ESQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 ++ +DT GI Y K + + S ++ +D+ LV+D+ ++ + Sbjct: 221 GTKFRVVDTAGIRRRGKVYEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDKHVAGY 280 Query: 126 IAKRSSRLILILNKIDCVK 144 + +I+ +NK D K Sbjct: 281 AHEAGLGMIIAVNKWDLPK 299 >gi|261749359|ref|YP_003257044.1| GTP-binding protein EngA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497451|gb|ACX83901.1| GTP-binding protein EngA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 439 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 15/167 (8%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S V++VG N GKSTL NR VG + +IV + TR + G +DT G + Sbjct: 2 SYIVSIVGRPNVGKSTLFNRLVGRRKAIVHVRSGVTRDRIYGESEWNGVHFSLVDTGG-Y 60 Query: 82 NA--KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLIL 135 N K+ +I+ IK AD++ +VD +K+ I D EI+ K ++L Sbjct: 61 NPIHKNLLDAEIIKQILIAIKEADVILFLVD----IKIGILDTDVEISQLLRKYKKYILL 116 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 ++NK+D K + + + + + +SA G G ++L+ L Sbjct: 117 VVNKVDNGK--YMYHNTDFF--CLGFREYYYISAINGSGTGELLDRL 159 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +++G N GKSTL+N F+ IVT+ TTR + + + + +DTPG+ Sbjct: 181 SVIGRPNVGKSTLINSFLEKNHHIVTNVSGTTRDSLDVFCKKLGYKCILVDTPGVRKKSK 240 Query: 86 SYHKLMIRLSWSTIK---HADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 L + T+K DI L+VD+ R + ++ + + + +I+++NK D Sbjct: 241 ISESLEFYSTMRTVKSIESTDICFLMVDAVRGWEAQDRNIFRLVERNQKGIIILINKWDL 300 Query: 143 VKPER 147 + E+ Sbjct: 301 LNSEK 305 >gi|255326187|ref|ZP_05367273.1| ribosome-associated GTPase EngA [Rothia mucilaginosa ATCC 25296] gi|255296641|gb|EET75972.1| ribosome-associated GTPase EngA [Rothia mucilaginosa ATCC 25296] Length = 526 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 12/186 (6%) Query: 11 EHKDFVQDNSRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 EH F Q + G VALVG N GKS+L+N+ G++ ++V TTR + I+ Sbjct: 236 EHSQFAQPEALGGPRRVALVGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDEIIELG 295 Query: 69 ESQIVFLDTPGIFN----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 F+DT GI AK + +R + ++ +++ +++D + +++ Sbjct: 296 GYPWRFVDTAGIRRRQHMAKGAEFYSSLRTQ-TALERSEVAVVLLDVSEPISEQDVRIVQ 354 Query: 125 EIAKRSSRLILILNKIDCVKPER--LLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 + ++L NK D + +R +LE+ EI L ++ +SA G D ++ Sbjct: 355 TVIDSGRAMVLAFNKWDTLDEDRRDMLER-EIDRDLAHVQWAPRVNISAKTGWHKDKLVP 413 Query: 181 YLCSTL 186 L +L Sbjct: 414 ALEHSL 419 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST++NR +G + ++V K TR V +DT G + Sbjct: 76 VVAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLGKSFTLVDTGGWESD 135 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + ++ AD+V LVVD+ + + +++ + + +ILI NKID Sbjct: 136 ARGIDAQVAEQAEIAVEQADVVVLVVDARVGVTASDEQIVRMLRRVKKPIILIANKIDDA 195 Query: 144 KPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLP 187 E EI N + + F VS G G D L+ + +P Sbjct: 196 HLE-----PEIYNLWSLGMGQPFPVSGLHGRGLADALDEILEVMP 235 >gi|261417942|ref|YP_003251624.1| GTP-binding protein EngA [Geobacillus sp. Y412MC61] gi|297529610|ref|YP_003670885.1| ribosome-associated GTPase EngA [Geobacillus sp. C56-T3] gi|319767246|ref|YP_004132747.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC52] gi|261374399|gb|ACX77142.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC61] gi|297252862|gb|ADI26308.1| ribosome-associated GTPase EngA [Geobacillus sp. C56-T3] gi|317112112|gb|ADU94604.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC52] Length = 436 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSRAEWLNHSFYLIDTGGI-DI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + IR I AD++ + + + ++ K + + + ++L +NKID Sbjct: 64 GDEPLLVQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKLLRRSNKPVVLAVNKIDN 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L+ L F E + +S G G D+L+ + P Sbjct: 124 PEMRDLIYD---FYALGFGE-PYPISGAHGTGLGDLLDAVVRHFP 164 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-- 84 L+G N GKS+LVN +G + IV+ TTR V + + V +DT G+ Sbjct: 180 LIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTSFVREGQEYVIIDTAGMRKRGKI 239 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +S K + + I+ +D+V +V+++ + + + +IL++NK D + Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVVLNAEEGIIEQDKKIAGYAHEAGRGVILVVNKWDAI 299 Query: 144 K 144 + Sbjct: 300 E 300 >gi|328541700|ref|YP_004301809.1| tRNA modification GTPase mnmE [polymorphum gilvum SL003B-26A1] gi|326411452|gb|ADZ68515.1| tRNA modification GTPase mnmE [Polymorphum gilvum SL003B-26A1] Length = 450 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 1/122 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+GA NAGKS+L+N G V+IVT + TTR ++ + + DT G+ Sbjct: 219 VVLMGAPNAGKSSLLNALAGRDVAIVTEEAGTTRDVIEVHLDLDGYPVTLADTAGLRAEA 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKIDCV 143 + IR + + AD++ + L + + L E + + + +L K D V Sbjct: 279 GRVEREGIRRATERGRGADLILWAAEPGGPLPEDPLEGLPEAVRAAGVPVWMLRTKTDLV 338 Query: 144 KP 145 P Sbjct: 339 TP 340 >gi|198431401|ref|XP_002128736.1| PREDICTED: similar to GTP binding protein 3 [Ciona intestinalis] Length = 544 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 20/158 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N GKS+L+N +IV+ TTR ++ + ++ DT G+ + Sbjct: 296 VAIIGKPNVGKSSLLNAVTQRPAAIVSPIPGTTRDVIETALDISGFPVLISDTAGLRRSH 355 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL--LKEIAKRSS----------- 131 K + ++ K AD+V LVV+S +VN DL E K+ + Sbjct: 356 GVIEKQGVDRAYVKAKEADLVVLVVNSQ---EVNNKDLNNFSEFIKQHAHELHLEKTSLE 412 Query: 132 RLILILNKIDCVKPERLLE----QAEIANKLVFIEKTF 165 LI+ILNK D ++ E+L + Q+E A+ L+ KT Sbjct: 413 NLIVILNKSDLLESEKLKKIRDLQSEYASVLLISCKTL 450 >gi|122701339|emb|CAL88059.1| GTPase [Helicobacter pylori] Length = 170 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K + I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KGTLLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAILRALDL 168 >gi|291333887|gb|ADD93568.1| tRNA modification GTPase TrmE [uncultured marine bacterium MedDCM-OCT-S04-C293] Length = 341 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-A 83 V + G N GKS+++N G + SIVT TTR + + K+ Q+ DT GI + Sbjct: 169 VVVAGPPNVGKSSIMNILSGEEASIVTEIKGTTRDPIYKKIQIKDLQVDIYDTAGINDET 228 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-HRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D +L I S S I+ AD+V VVD+ +R+ + +++ ++ + NK D Sbjct: 229 TDEIERLGIDKSRSLIEGADLVLEVVDAENRDFSL----------EKNENILKVFNKSDI 278 Query: 143 VKPER 147 P + Sbjct: 279 SSPPK 283 >gi|114769773|ref|ZP_01447383.1| tRNA modification GTPase [alpha proteobacterium HTCC2255] gi|114549478|gb|EAU52360.1| tRNA modification GTPase [alpha proteobacterium HTCC2255] Length = 432 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 29/175 (16%) Query: 15 FVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 F + R G VA+VG N GKSTL+N G +I + TTR ++ + + Sbjct: 206 FAAERIREGFEVAIVGPPNIGKSTLLNALAGRDAAITSDVAGTTRDVIEVKMDINGFAVT 265 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV--DSHRELKVNIHDLLKEIAKRSS 131 LDT G+ D K+ + L+ + K+ADI + + ELK+ Sbjct: 266 LLDTAGLRETTDKVEKIGVELAKTRAKNADIRVFITHDGTVNELKLKPE----------- 314 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 LN I + LL++ +I +S G G D +L + L Sbjct: 315 -----LNDIIVIGKSDLLDKTDI----------LSISGKSGEGLDSLLKIISDIL 354 >gi|325915367|ref|ZP_08177684.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas vesicatoria ATCC 35937] gi|325538414|gb|EGD10093.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas vesicatoria ATCC 35937] Length = 465 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ E Q + +DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGGIAGD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 ++ R + + AD+V VVD RE ++ D +L + K + +L++NKID Sbjct: 65 EEGLAGATARQARAAAGEADLVLFVVDG-REGASSLDDEILAWLRKLARPTVLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E A +SA G D++L + + LP Sbjct: 124 TDEETV--RSEFAR--YGFSDVVALSAAHRQGIDELLEEVGARLP 164 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDNRQYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + QAE ++ KL F+ + +SA G G ++ + A +S + Sbjct: 301 G-QSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGMRELFQAIHRAHASATHEFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|308389025|gb|ADO31345.1| putative GTP-binding protein EngA [Neisseria meningitidis alpha710] Length = 485 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 6/173 (3%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +++ A++G N GKSTLVN +G + I TTR + K +DT Sbjct: 172 DAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFERKGKPFTIIDTA 231 Query: 79 GI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 G+ ++ K + + ++ A++ LV+D+ +++ + + L++ Sbjct: 232 GVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVV 291 Query: 136 ILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 +NK D + ER + + +I KL F++ K +SA K G D + + + + Sbjct: 292 AVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGIDGLFDSIQAA 344 Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 8/175 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS H+ M + + + AD V +VD L + + + + L +NK + Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 R + AE + + +++S G G ++ + P P V AD Sbjct: 123 GGN--RAVLAAEFYE--LALGDPYVISGAHGDGVYYLIEEILENFP-EPEVEEAD 172 >gi|268610927|ref|ZP_06144654.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1] Length = 399 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 8/161 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + G NAGKS++VN G ++S+V+ K TT + + + +V +DTPG F+ Sbjct: 14 IGFFGRRNAGKSSVVNAVTGQELSVVSDVKGTTTDPVTKAMELLPLGPVVIIDTPG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + ++ +R + + D+ L+VD+ L L+ ++ I + NK D + Sbjct: 73 VGTLGEMRVRKTKQILNRTDLAVLIVDNSTGLSDTDKQLIGIFKEKDIPYITVYNKSD-I 131 Query: 144 KPERLLEQAEIANKLVFIE-----KTFMVSATKGHGCDDVL 179 P+ ++ EI+ V E K M TK G + VL Sbjct: 132 APKADCKEGEISVSAVCRENIHELKEMMAHMTKRQGEEKVL 172 >gi|163813998|ref|ZP_02205391.1| hypothetical protein COPEUT_00150 [Coprococcus eutactus ATCC 27759] gi|158450692|gb|EDP27687.1| hypothetical protein COPEUT_00150 [Coprococcus eutactus ATCC 27759] Length = 445 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N G K+SIV TR + ++ + +DT GI Sbjct: 10 IVAIVGRPNVGKSTLFNVLAGEKISIVQDTPGVTRDRIYADINWLDYNFTLIDTGGIEPE 69 Query: 84 KDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 D+ K M + I+ AD++ + D R+ V+ + ++ +RS + ++L++NK+D Sbjct: 70 TDNIILKSMREQAEIAIETADVIIFMTDV-RQGMVDDDSKVADMLRRSKKPIVLVVNKVD 128 Query: 142 C 142 Sbjct: 129 S 129 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 16/161 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+++N+ +G IV+ TTR + V + VF+DT G+ Sbjct: 185 IAIIGKPNVGKSSIINKLLGEDRVIVSDIAGTTRDAIDTEVVRNGREYVFIDTAGLRKKS 244 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA----KRSSRLILIL 137 K+ + I + S ++ ++ LV+D+ I D +IA +R +I+ + Sbjct: 245 KIKEDIERYSIIRTVSAVERCNVAVLVIDATE----GITDQDAKIAGIAHERGKGMIIAV 300 Query: 138 NKIDCV-KPERLLEQ--AEIANKLVFI--EKTFMVSATKGH 173 NK D + K ++ + + EI NKL ++ + +SA G Sbjct: 301 NKWDAIEKNDKTIYKFTEEIRNKLSYMPYAELLFISAETGQ 341 >gi|138897067|ref|YP_001127520.1| tRNA modification GTPase TrmE [Geobacillus thermodenitrificans NG80-2] gi|196249888|ref|ZP_03148584.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16] gi|166200479|sp|A4ITX1|MNME_GEOTN RecName: Full=tRNA modification GTPase mnmE gi|134268580|gb|ABO68775.1| Thiophen and furan oxidation [Geobacillus thermodenitrificans NG80-2] gi|196210764|gb|EDY05527.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16] Length = 462 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G ++G N GKS+L+N +IVT TTR ++ V+ + + +DT G Sbjct: 222 REGLATVIIGRPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAG 281 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S +K AD++ LV++ H L L +I+I+NK Sbjct: 282 IRETEDIVERIGVERSRQMLKKADLILLVLNYHEPLTEEDERLFA--MTEGMDVIVIVNK 339 Query: 140 ID 141 D Sbjct: 340 TD 341 >gi|47459397|ref|YP_016259.1| tRNA modification GTPase TrmE [Mycoplasma mobile 163K] gi|81828449|sp|Q6KH82|MNME_MYCMO RecName: Full=tRNA modification GTPase mnmE gi|47458727|gb|AAT28048.1| thiophene and furan oxidation protein [Mycoplasma mobile 163K] Length = 442 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N + + +IVT++ TTR ++ DT G+ + Sbjct: 218 IAIVGKPNVGKSSLLNALLNEERAIVTNEAGTTRDVIEASFQIDGFLFSISDTAGLREVQ 277 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 ++ L I+ ++ TI+ +DI+ ++ + N D EI ++ + ILNK D +K Sbjct: 278 NNIENLGIQKTFETIEKSDIILHIIQPNE--AENDFDKQIEIKSKNKIYLKILNKKDLIK 335 >gi|56420756|ref|YP_148074.1| GTP-binding protein EngA [Geobacillus kaustophilus HTA426] gi|81819681|sp|Q5KXT0|DER_GEOKA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56380598|dbj|BAD76506.1| GTP-binding protein [Geobacillus kaustophilus HTA426] Length = 436 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSRAEWLNHSFYLIDTGGI-DI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + IR I AD++ + + + ++ K + + + ++L +NKID Sbjct: 64 GDEPLLVQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKLLRRSNKPVVLAVNKIDN 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L+ L F E + +S G G D+L+ + P Sbjct: 124 PEMRDLIYD---FYALGFGE-PYPISGAHGTGLGDLLDAVVRHFP 164 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK-- 84 L+G N GKS+LVN +G + IV+ TTR V + + V +DT G+ Sbjct: 180 LIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTSFVREGQEYVIIDTAGMRKRGKI 239 Query: 85 -DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +S K + + I+ +D+V +V+++ + + + +ILI+NK D + Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVVLNAEEGIIEQDKKIAGYAHEAGRGVILIVNKWDAI 299 Query: 144 K 144 + Sbjct: 300 E 300 >gi|126463651|ref|YP_001044765.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides ATCC 17029] gi|205415802|sp|A3PNS7|MNME_RHOS1 RecName: Full=tRNA modification GTPase mnmE gi|126105315|gb|ABN77993.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides ATCC 17029] Length = 428 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 45/86 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VGA NAGKSTL+N + +I + TTR ++ + + FLDT G+ + Sbjct: 215 VAIVGAPNAGKSTLLNALARREAAITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTS 274 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 D L I + + K AD+ ++D Sbjct: 275 DLVESLGIERAVTRAKAADLRVFLLD 300 >gi|21672838|ref|NP_660905.1| GTP-binding protein EngA [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|8134425|sp|O51881|DER_BUCAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2827027|gb|AAC38119.1| ORF453 hypothetical protein [Buchnera aphidicola] gi|21623492|gb|AAM68116.1| probable GPT-binding protein EngA [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 453 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 10/171 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 + L+G TN GKSTL N + ++V TR G KE++ I +DT GI Sbjct: 5 IVLIGRTNVGKSTLFNILSKTRNALVADYPGLTRDRNYGYCYLKENKKITIVDTAGINFK 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 K + IK D + +V++ + +++ ++I K + IL++NKID + Sbjct: 65 SQKIEKQSHEQTLKAIKECDGILFLVNARDGVMPEEYEISRKIRKYEKKTILVINKIDGI 124 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 K + + L F E +SA+ G +++++ L PW+ S Sbjct: 125 KE---ISKINEFYSLGFKE-NIKISASHNQGINNLISKY-----LTPWINS 166 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 18/162 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A +G N GKSTL+N + K I ++K TT V + +F+DT G+ K Sbjct: 190 IACIGKPNVGKSTLINSLLMKKRMITSNKAGTTLDTVLVPIKYNYKNYIFIDTAGMSKKK 249 Query: 85 DSYHKL----MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE--IAKRSSRLILILN 138 +K+ I+ + TI+ + + L++D+ + ++ DLL I K LI+++N Sbjct: 250 SKTNKIEKFCKIK-TLQTIEKSHLTLLIIDAKDQ--ISKQDLLLSSFIEKSGKPLIIVIN 306 Query: 139 KIDCVKPERLLEQAEIAN------KLVFIEKTFMVSATKGHG 174 K D + L E+ + N K F K +SA G Sbjct: 307 KCDLL---SLKEKKNLENLIKKQLKCNFFSKIHFISALNNEG 345 >gi|161170269|gb|ABX59239.1| predicted GTPase [uncultured marine bacterium EB000_55B11] gi|297183798|gb|ADI19921.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 432 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 29/175 (16%) Query: 15 FVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 F + R G VA+VG N GKSTL+N G +I + TTR ++ + + Sbjct: 206 FAAERIREGFEVAIVGPPNIGKSTLLNALAGRDAAITSDVAGTTRDVIEVKMDINGFAVT 265 Query: 74 FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV--DSHRELKVNIHDLLKEIAKRSS 131 LDT G+ D K+ + L+ + K+ADI + + ELK+ Sbjct: 266 LLDTAGLRETTDKVEKIGVELAKTRAKNADIRVFITHDGTVNELKLKPE----------- 314 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 LN I + LL++ +I +S G G D +L + L Sbjct: 315 -----LNDIIVIGKSDLLDKTDI----------LSISGKSGEGLDSLLKTISDIL 354 >gi|118444403|ref|YP_877886.1| GTP-binding protein [Clostridium novyi NT] gi|118134859|gb|ABK61903.1| GTP-binding protein [Clostridium novyi NT] Length = 594 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 36/215 (16%) Query: 25 VALVGATNAGKSTLVNRF--VGAKVSIVTHKV--------QTTRSIVRGIVSEKESQIVF 74 ++LVG TNAGKSTL N+ + + +V + T R +V + Sbjct: 366 ISLVGYTNAGKSTLRNKLCEIASPKDVVDKETVFEADMLFATLDVTTRALVLPDNRLVTL 425 Query: 75 LDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIA 127 DT G + H L+ + + + ++D++ VVDS +++++ ++ +L+E+ Sbjct: 426 TDTVGFI--RKLPHDLVEAFKSTLEEVVNSDLLLHVVDSSSKDAYKQIEA-VNFVLEELE 482 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +IL+LNKID E+L E N L +E +SA D +LN +C+ LP Sbjct: 483 SINKPMILLLNKIDKADKEQLEGLKEKFNNLKVLE----ISAKDNLNLDTLLNDICTALP 538 Query: 188 --------LAPWVYSADQISDLPMFHFTAEITREK 214 L P+ SA + M H ++ E+ Sbjct: 539 NPLKKVEFLIPYSDSA----SVAMLHRNGKVLEEE 569 >gi|116254463|ref|YP_770301.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. viciae 3841] gi|205415801|sp|Q1MA18|MNME_RHIL3 RecName: Full=tRNA modification GTPase mnmE gi|115259111|emb|CAK10222.1| putative tRNA modification GTPase [Rhizobium leguminosarum bv. viciae 3841] Length = 439 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V + GA NAGKS+L+N V+IVT TTR +++ + I DT G+ A Sbjct: 221 VVIAGAPNAGKSSLLNALARRDVAIVTEIAGTTRDVLQVDLDIDGYLIKLFDTAGLREAD 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHREL 115 D +R + ++ AD+V L+VD + L Sbjct: 281 DKVEMEGVRRARVALRDADLVLLLVDMTKPL 311 >gi|157164829|ref|YP_001466649.1| tRNA modification GTPase TrmE [Campylobacter concisus 13826] gi|205829127|sp|A7ZCZ1|MNME_CAMC1 RecName: Full=tRNA modification GTPase mnmE gi|112800067|gb|EAT97411.1| tRNA modification GTPase TrmE [Campylobacter concisus 13826] Length = 441 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 56/119 (47%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+++N F+ + +IV+ + TTR + + +DT GI Sbjct: 217 IAIVGKPNVGKSSILNSFLAYERAIVSDEAGTTRDRIEENFKIGSHLVRIIDTAGIRKDA 276 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ I S S I ADI+ V D ++++ I+ + + ILNK D Sbjct: 277 GKIEQIGINYSISAINEADIILAVFDGSCPSDEQDKEIIRLISNSNKKAFFILNKSDLA 335 >gi|108759687|ref|YP_631948.1| GTP-binding protein EngA [Myxococcus xanthus DK 1622] gi|122981004|sp|Q1D5X5|DER_MYXXD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|108463567|gb|ABF88752.1| GTP-binding protein EngA [Myxococcus xanthus DK 1622] Length = 459 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 3/165 (1%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR VG ++++V + TR + Q F+DT G Sbjct: 4 LVAIVGRPNVGKSTLFNRLVGRRIALVQDEPGVTRDRHYADAEWEGRQFTFIDTGGFVPG 63 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + +R + + D++ V D+ L + + K ++L NK+D Sbjct: 64 DEDQLLQQVREQAQLAVDECDVIVFVTDARAGLTAADEAVANYLRKSGKPVVLAANKLDN 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + + +SA G G ++ + + + LP Sbjct: 124 TSGQMQALAGEFYR--LGLGDVQALSAEHGLGMQELFDSVVARLP 166 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVN + K + + TTR V ++ K+ +++ DT GI K Sbjct: 185 LAIIGRPNVGKSTLVNAILKEKRVVASDVAGTTRDPVDSELTYKDRKLLLTDTAGIRRKK 244 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKI 140 + + + ++ +D+ L++D+ E V+ L +A+ R L++++NK Sbjct: 245 SIAQRVEQFSVVAALKVMERSDVAVLLMDAT-EPAVDQDAKLAGLAEERGRALVIVVNKW 303 Query: 141 DCV 143 D V Sbjct: 304 DLV 306 >gi|300812163|ref|ZP_07092607.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496848|gb|EFK31926.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 435 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR + +V+IV + TR S Q +DT GI Sbjct: 5 IVAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGI-TW 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNKID 141 +DS IR I+ AD++ ++ D+ + + ++ + + + R+ + +L+ +NK D Sbjct: 64 EDSTIDEEIRAQAEIAIEEADVIVMLADASQGV-TSLDERIAHLLYRADKPVLLAVNKAD 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE+ + + + + + VS + G G D+L+ + P Sbjct: 123 --NPEQRTDIYDFYS--LGLGDPIPVSGSHGTGIGDLLDEVVKNFP 164 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 7/139 (5%) Query: 13 KDFVQDNSRS--GCVA--LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 K+F D ++ G ++ ++G N GKS++VNR +G + IV ++ TTR + + Sbjct: 161 KNFPADAEKTEEGVISFSVIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKD 220 Query: 69 ESQIVFLDTPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKE 125 ++ +DT GI Y K + + S ++ +D+ LV+D+ ++ + Sbjct: 221 GTKFRVVDTAGIRRRGKVYEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDKHVAGY 280 Query: 126 IAKRSSRLILILNKIDCVK 144 + +I+ +NK D K Sbjct: 281 AHEAGLGMIIAVNKWDLPK 299 >gi|269469210|gb|EEZ80744.1| GTPase [uncultured SUP05 cluster bacterium] Length = 438 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 8/124 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL G TNAGKSTL N A+V T S +R ++ + V DT G Sbjct: 206 MIALAGYTNAGKSTLFNALTKAEVFADDRLFATLDSTIRRVILPASGEAVIADTVGFI-- 263 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILIL 137 +D H+L+ + + + A+++ VVD+ E + + D++ EI IL++ Sbjct: 264 QDLPHELVAAFKSTLEETRRANVLLHVVDASDEYNLEKIDQVEDIINEIDANKIPSILVM 323 Query: 138 NKID 141 NKID Sbjct: 324 NKID 327 >gi|258654174|ref|YP_003203330.1| small GTP-binding protein [Nakamurella multipartita DSM 44233] gi|258557399|gb|ACV80341.1| small GTP-binding protein [Nakamurella multipartita DSM 44233] Length = 483 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V TR V + + +DT G Sbjct: 48 TLAVVGRPNVGKSTLVNRLIGRREAVVQDVPGVTRDRVSHDALWRGRRFTVVDTGGWDPM 107 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 + + ++ +D V +VVD+ D + ++ +RS R +IL +NK+D Sbjct: 108 ASGLQAEVTAQAERAMQTSDAVLVVVDASVG-ATETEDAIAKVLRRSKRPVILAVNKVDD 166 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E A + + + VS G G D+L+ + LP AP Sbjct: 167 ER----AEADAAALWSLGLGEPIAVSGLHGRGSGDLLDAVLEALPTAP 210 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 10/171 (5%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 ++FV VAL+G N GKS+L+N+ G S+V TT V +V E + Q+ Sbjct: 211 EEFVGSGGGPRRVALIGRPNVGKSSLLNKLTGESRSVVHAVAGTTVDPVDSLV-EIDGQL 269 Query: 73 -VFLDTPG----IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 F+DT G + AK + +R + ++ A++ ++DS + ++ + Sbjct: 270 WRFVDTAGLRRRVNQAKGMEYYASLRTQ-TALESAEVAIALIDSSTPITEQDQRVISMVI 328 Query: 128 KRSSRLILILNKIDCVKPERLLE-QAEIANKLVFI--EKTFMVSATKGHGC 175 L++ LNK D V +R E + E+ L + + +SA G G Sbjct: 329 DSGRALVIALNKADLVDADRRAEVEDEVLRDLARVAWAQRINISAQSGRGV 379 >gi|121602372|ref|YP_988930.1| GTP-binding proten HflX [Bartonella bacilliformis KC583] gi|120614549|gb|ABM45150.1| GTP-binding proten HflX [Bartonella bacilliformis KC583] Length = 457 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 12/171 (7%) Query: 19 NSRSGC---VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 N + C +ALVG TNAGKSTL NR GA + T +R I ++ Sbjct: 213 NRKKTCHPVIALVGYTNAGKSTLFNRLSGANILTKDMLFATLDPTLRKITLPYGKTVLLS 272 Query: 76 DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEIA------K 128 DT G + ++ R + + AD++ V D S + + + D+L+ ++ Sbjct: 273 DTVGFISNLPTHLIAAFRATLEEVIEADLIIHVRDISDPDHQFHAQDVLEILSSLGIDIN 332 Query: 129 RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 R+I + NKID + L A N + MVSA G G +L Sbjct: 333 DKGRIIEVWNKIDILDQHVL--NALQMNTKTLLNPALMVSALTGEGLKQLL 381 >gi|71280498|ref|YP_269172.1| putative GTP-binding protein HflX [Colwellia psychrerythraea 34H] gi|71146238|gb|AAZ26711.1| putative GTP-binding protein HflX [Colwellia psychrerythraea 34H] Length = 455 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 CVALVG TNAGKS+++ G+ V T + VR + + +I+ DT G Sbjct: 236 CVALVGYTNAGKSSMMRAITGSDVEGENKLFATLDTTVRALFPITQPRILVSDTVGFI-- 293 Query: 84 KDSYHKLMIRL--SWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILI 136 K H L+ + + + A ++ VVD+ +L V +H++L E+ S+ +L+ Sbjct: 294 KKLPHDLVASFHSTLAEAQDASLLLYVVDASDPSFRAQLDV-VHEVLDEVGVEDSKKLLV 352 Query: 137 LNKIDCVKPER 147 LNK D + E+ Sbjct: 353 LNKSDQLSIEQ 363 >gi|333028090|ref|ZP_08456154.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071] gi|332747942|gb|EGJ78383.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071] Length = 488 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 4/166 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVNR +G + ++V + TR V + +DT G Sbjct: 52 LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 111 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + I+ +D V VVD+ +++ + K ++L NK+D Sbjct: 112 LGIDASVAAQAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDG-- 169 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 P + A + + + + + VSA G G D+L+ + LP AP Sbjct: 170 PSGEADAAMLWS--LGLGEPHPVSALHGRGTGDMLDAVLEALPDAP 213 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VAL+G N GKS+L+N+ G +V + TTR V ++ F+DT GI Sbjct: 228 VALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRKRV 287 Query: 82 ---NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + ++ A++ +++D + +L L+L N Sbjct: 288 HLQQGADYYASLR---TAAAVEKAEVAVVLIDGADSISAQDQRILTMAVDAGRALVLAYN 344 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 345 KWDTLDEER 353 >gi|303327492|ref|ZP_07357933.1| ribosome-associated GTPase EngA [Desulfovibrio sp. 3_1_syn3] gi|302862432|gb|EFL85365.1| ribosome-associated GTPase EngA [Desulfovibrio sp. 3_1_syn3] Length = 452 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS+L+N G + IV+ TTR V VF+DT G+ Sbjct: 192 LAMLGRPNAGKSSLINALAGEERMIVSDVAGTTRDSVDVRFRRDGQDYVFVDTAGVRRRT 251 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS K + + + AD+ L +D+ + L+ + R + ++++NK D Sbjct: 252 RITDSVEKYSVNAAIKSSTKADVTLLTLDATEGVSQQDKRLMDMLDTRKTPFMVLINKCD 311 Query: 142 CV 143 + Sbjct: 312 LI 313 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGI 80 + LVG N GKSTL NR + + +I + TR + G+V K+ +DT GI Sbjct: 8 IVLVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRRKDLPSFGIVDTGGI 64 >gi|160947592|ref|ZP_02094759.1| hypothetical protein PEPMIC_01527 [Parvimonas micra ATCC 33270] gi|158446726|gb|EDP23721.1| hypothetical protein PEPMIC_01527 [Parvimonas micra ATCC 33270] Length = 424 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 21/160 (13%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVG---------AKVSIVTHKVQTTRSIVRGIVSEKE 69 NS+ ++LVG TNAGKSTL+N+ + +V + T + VR + Sbjct: 190 NSKEPIISLVGYTNAGKSTLINKLISYGKDENSEIKEVFVKDMLFATLDTYVREGLLLNG 249 Query: 70 SQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-----SHRELKVNIHDL 122 S+++++DT G D H L+ + + IK++D++ VVD ++K+ +D+ Sbjct: 250 SKVMYVDTVGF--VCDIPHNLVESFKGTLEEIKYSDLILHVVDISNVNVDEQIKIT-NDM 306 Query: 123 LKEIAKRSSRLILILNKIDCVKPERL-LEQAEIANKLVFI 161 +K++ +I + NK+D + E + + A I NK VFI Sbjct: 307 IKKLECEDKNVIYVFNKVDKLADENIKFQYANIENK-VFI 345 >gi|330993264|ref|ZP_08317200.1| GTP-binding protein hflX [Gluconacetobacter sp. SXCC-1] gi|329759666|gb|EGG76174.1| GTP-binding protein hflX [Gluconacetobacter sp. SXCC-1] Length = 436 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 20/166 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG TNAGKSTL N GA V T +RGI +++ DT G + Sbjct: 208 VALVGYTNAGKSTLFNALTGASVYAQDQLFATLDPTMRGIQLPSGRRVILSDTVGFISDL 267 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRE---LKVNIHDLLKEIAKRSS-------RL 133 + R + + ADI+ V D SH + + ++ ++L+ +A+ + R+ Sbjct: 268 PTELIAAFRATLEEVAEADIILHVRDVSHPDSASQRQDVIEVLEGMARNGTIEEDWQGRV 327 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 I +LNK D V + A N ++SA G G D+L Sbjct: 328 IEVLNKADLVGGREAV-GARPGN--------VVISAITGDGLPDLL 364 >gi|307105429|gb|EFN53678.1| hypothetical protein CHLNCDRAFT_32043 [Chlorella variabilis] Length = 415 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 11/168 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL+N A V T R + ++F DT G Sbjct: 160 VVALVGYTNAGKSTLLNTLTQAGVLAEDKLFATLDPTTRRVELPGGKALLFTDTVGFIQK 219 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSSRLILILNK 139 + R + IK A ++ VVD SH I + +L E+ + + + NK Sbjct: 220 LPTQLVAAFRATLEEIKDASLLLHVVDVSHPNAAAQIDAVNGVLAELGVENMPTLNVWNK 279 Query: 140 ID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 +D C PE + +A A + E+T VS G G ++L + + L Sbjct: 280 VDACADPE--VVRAVAARR----EQTVCVSGLTGEGLGEMLERVSAKL 321 >gi|303239164|ref|ZP_07325693.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2] gi|302593209|gb|EFL62928.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2] Length = 407 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G NAGKSTL+N G +++V++ TT + + + +V +DT GI + Sbjct: 12 IAIFGRRNAGKSTLINALTGQDIAVVSNVPGTTTDPVYKTMELLPLGPVVIIDTAGIDDV 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D L + ++ ++ + VVD+ + ++EI R ++ +LNK D + Sbjct: 72 GD-LGNLRMEKTYDVLRKTNFAIFVVDADEGITEFDIKFIEEIKSREVAVVAVLNKSDKI 130 Query: 144 KPER 147 K E+ Sbjct: 131 KTEQ 134 >gi|116670027|ref|YP_830960.1| small GTP-binding protein [Arthrobacter sp. FB24] gi|116610136|gb|ABK02860.1| small GTP-binding protein [Arthrobacter sp. FB24] Length = 522 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 19/193 (9%) Query: 5 EITFFNEHKDFVQDNSRSGCV---ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI ++ + N R V A+ G TNAGKS+L+NR A V + T V Sbjct: 280 EIAAMKPARETKRANRRRNSVPSVAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTV 339 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI- 119 R + DT G + + R + + +D++ VVD SH + + I Sbjct: 340 RKAETADGLGYTLADTVGFVRSLPTQLVEAFRSTLEEVADSDLILHVVDVSHPDPEGQIA 399 Query: 120 --HDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + E+ R I++LNK D P ERL ++ + +VSA G G Sbjct: 400 AVRAVFSEVDARKVPEIIVLNKADAADPFVVERLKQRE---------PRHVVVSARTGQG 450 Query: 175 CDDVLNYLCSTLP 187 ++L + ++P Sbjct: 451 IAELLKAISESIP 463 >gi|42767|emb|CAA26505.1| unnamed protein product [Escherichia coli] Length = 50 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 32/47 (68%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI 64 D S G +A+VG N GKSTL+N+ +G K+SI + K QTTR + GI Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI 50 >gi|329964947|ref|ZP_08301955.1| hydrogenase maturation GTPase HydF [Bacteroides fluxus YIT 12057] gi|328524588|gb|EGF51656.1| hydrogenase maturation GTPase HydF [Bacteroides fluxus YIT 12057] Length = 400 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 9/165 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL G N+GKS+LVN G ++V+ TT +++ + +F+DTPG + Sbjct: 18 IALFGRRNSGKSSLVNALTGQDTALVSSIPGTTTDPVMKAMEVHPLGPCLFIDTPGFDDD 77 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC- 142 + + + + ++ DI L+ + E + + L+ +A R +I +LNK D Sbjct: 78 EGELGGMRVERTLKMMERTDIALLLCEDGGEQE---KEWLRILAARDIPVIPVLNKADLH 134 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L Q E L + + SA +G G ++ + LP Sbjct: 135 TDVESLAGQIEKEYGLAPV----IASAKEGTGIREIFRAILEKLP 175 >gi|325962851|ref|YP_004240757.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein TIGR00650 [Arthrobacter phenanthrenivorans Sphe3] gi|323468938|gb|ADX72623.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein TIGR00650 [Arthrobacter phenanthrenivorans Sphe3] Length = 527 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR A V + T VR + DT G + Sbjct: 307 SVAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAETADGLGYTLADTVGFVRS 366 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK---EIAKRSSRLILILNK 139 + R + + +D++ VVD SH + + I + K E+ R I++LNK Sbjct: 367 LPTQLVEAFRSTLEEVADSDLILHVVDASHPDPEGQIAAVRKVFSEVDARKVPEIIVLNK 426 Query: 140 IDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D P ERL ++ + +VSA G G ++L + +P Sbjct: 427 ADAADPFVVERLKQRE---------PRHVVVSARTGEGIPELLRAISEAIP 468 >gi|284048360|ref|YP_003398699.1| GTP-binding proten HflX [Acidaminococcus fermentans DSM 20731] gi|283952581|gb|ADB47384.1| GTP-binding proten HflX [Acidaminococcus fermentans DSM 20731] Length = 604 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 9/166 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG TNAGKSTL+N + + T R + S DT G Sbjct: 386 VCLVGYTNAGKSTLLNTLTHSDIYAQDQLFATLDPTTRQLDLPDGSSCTLTDTVGFIQRL 445 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILILNKI 140 + + +K AD++ VVDS EL ++ +L+E+ ++ + NK+ Sbjct: 446 PHQLVAAFKSTLEVVKDADLLLHVVDSSHELAREQTEAVYQVLQELGVTDKPILTVYNKV 505 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D RL + + +L + +SA G G ++L L L Sbjct: 506 D-----RLSQHEGLRRRLEQEDNALCISARTGEGVPELLETLARLL 546 >gi|224475497|ref|YP_002633103.1| tRNA modification GTPase TrmE [Staphylococcus carnosus subsp. carnosus TM300] gi|222420104|emb|CAL26918.1| putative tRNA modification GTPase TrmE [Staphylococcus carnosus subsp. carnosus TM300] Length = 460 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 7/157 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR ++ V+ + + +DT G Sbjct: 220 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D K+ + S + AD++ V++ + L L + I + I+I+NK Sbjct: 280 IRETEDIVEKIGVERSRKALSEADLILFVLNYNEGLTEEDRKLYEVIKNEDA--IIIVNK 337 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 D + L E + + IE + + K G D Sbjct: 338 TDLEQHLDLDEVKAMVGDMPVIETSML----KQEGID 370 >gi|209696182|ref|YP_002264112.1| putative GTPase HflX [Aliivibrio salmonicida LFI1238] gi|208010135|emb|CAQ80460.1| HflX protein, putative GTP-binding protein [Aliivibrio salmonicida LFI1238] Length = 439 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL NR A V T +R I + DT G Sbjct: 199 TISLVGYTNAGKSTLFNRITDAGVYAADQLFATLDPTLRKIDVTDVGTAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRE-LKVNIHD---LLKEIAKRSSRLILIL 137 + H L+ + + + A+I+ VVD+ E + NI +L+EI +L++ Sbjct: 257 RHLPHDLVAAFKATLQETQEANILLHVVDASDERFRENIEAVDIVLEEIDANEVPYLLVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ +Q I + + VSA +G G D + L L Sbjct: 317 NKIDDLED----QQPRIDRDEEGVPRCVWVSAMEGEGIDLLFQALTERL 361 >gi|330831012|ref|YP_004393964.1| GTPase, HflX [Aeromonas veronii B565] gi|328806148|gb|AEB51347.1| GTPase, HflX [Aeromonas veronii B565] Length = 428 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N+ A V T +R +V ++ DT G Sbjct: 199 TVSLVGYTNAGKSTLFNQLTAASVYAADQLFATLDPTLRNLVIRDVGDVILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSSRLILIL 137 + H L+ + + + AD++ VVD + +++ NI +L EI ++I Sbjct: 257 RHLPHDLVAAFKATLQETREADLLLHVVDCADEQMQENIDSVQQVLAEIEADDRPQLMIC 316 Query: 138 NKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + +P L E V++ SA G GC+ + L L Sbjct: 317 NKIDKLADRPAGLERDDEGRPLRVWL------SAQTGEGCEHLFTALTELL 361 >gi|226328001|ref|ZP_03803519.1| hypothetical protein PROPEN_01892 [Proteus penneri ATCC 35198] gi|225203705|gb|EEG86059.1| hypothetical protein PROPEN_01892 [Proteus penneri ATCC 35198] Length = 119 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR + ++V TR G + + + +DT GI A Sbjct: 9 VIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEGEEFIIIDTGGIDGA 68 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHREL 115 ++ M S I+ ADIV +VD+ L Sbjct: 69 EEGVETHMASQSLQAIQEADIVLFLVDARAGL 100 >gi|153816261|ref|ZP_01968929.1| hypothetical protein RUMTOR_02510 [Ruminococcus torques ATCC 27756] gi|145846444|gb|EDK23362.1| hypothetical protein RUMTOR_02510 [Ruminococcus torques ATCC 27756] Length = 408 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + G NAGKS+++N G +++V+ K TT + + + +V +DTPGI + Sbjct: 14 IGFFGRRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKSMELLPIGPVVMIDTPGI-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + KL ++ S+ T+ D LV+D+ + LL++I + ++ LNK + Sbjct: 73 EGELGKLRVKKSYQTLNKTDAAVLVIDAAAGVSGEDKKLLEKIKAKKIPYVVALNKKELA 132 Query: 144 KPERL 148 + E + Sbjct: 133 EEEDM 137 >gi|330720972|gb|EGG99139.1| GTP-binding protein HflX [gamma proteobacterium IMCC2047] Length = 426 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +L G TNAGKSTL NR A V T +R + E +V DT G Sbjct: 200 TASLAGYTNAGKSTLFNRLTDASVYAQDQLFATLDPTMRRLEVEGVGSVVLADTVGFI-- 257 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLILIL 137 + HKL+ R + A ++ V+D+ E + ++D+L+EI +L+ Sbjct: 258 RHLPHKLVEAFRATLQEAAEASLLLHVIDAADENRDGNIEQVNDVLREIKADEVPSLLVY 317 Query: 138 NKIDCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + K RL + + V+ VSA G G D +L + L Sbjct: 318 NKIDLIEDKLPRLDRDDQGVPRRVW------VSAETGAGIDLLLQAIGERL 362 >gi|311744959|ref|ZP_07718744.1| GTP-binding protein HflX [Algoriphagus sp. PR1] gi|126577466|gb|EAZ81686.1| GTP-binding protein HflX [Algoriphagus sp. PR1] Length = 422 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 11/142 (7%) Query: 11 EHKDFVQDNSRSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 E + Q R G V ALVG TN GKSTL+N + T S VR +V E+ Sbjct: 196 EKQGVTQRKGRKGIVRVALVGYTNVGKSTLMNLVTKTDILAENKLFATVDSTVRKVVLER 255 Query: 69 ESQIVFL--DTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDL 122 + FL DT G ++ + + I+ AD++ VVD SH + +I + Sbjct: 256 ---VPFLLSDTVGFIRKLPTHLIEAFKSTLDEIREADLLVHVVDISHPNFEDHISVVNQT 312 Query: 123 LKEIAKRSSRLILILNKIDCVK 144 L+EI ++L+ NKID V+ Sbjct: 313 LREINAGDKPILLVFNKIDLVE 334 >gi|294085212|ref|YP_003551972.1| tRNA modification GTPase TrmE [Candidatus Puniceispirillum marinum IMCC1322] gi|292664787|gb|ADE39888.1| tRNA modification GTPase TrmE [Candidatus Puniceispirillum marinum IMCC1322] Length = 458 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 7/141 (4%) Query: 2 EMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ I N+ + ++D + VAL+G+ NAGKST +N G I + + TTR IV Sbjct: 213 EIAAIMADNKAGEVIRDGVK---VALLGSVNAGKSTALNAISGRDAVITSAEAGTTRDIV 269 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 + + F+DT G+ + + IR + + AD +++D D Sbjct: 270 AVKMDLGGVPVTFMDTAGLRDGAGAIEAEGIRRARQAGRDADFGLIILDGS---DPKWPD 326 Query: 122 LLKEIAK-RSSRLILILNKID 141 L EI+ + +++LNK D Sbjct: 327 HLAEISDLTGGQHLIVLNKCD 347 >gi|239909110|ref|YP_002955852.1| GTP-binding protein HflX [Desulfovibrio magneticus RS-1] gi|239798977|dbj|BAH77966.1| GTP-binding protein HflX [Desulfovibrio magneticus RS-1] Length = 539 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 4/128 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL+N G+ V T R + + +I+ DT G Sbjct: 349 VVSLVGYTNAGKSTLLNTLTGSAVLAENRLFATLDPTSRRLRFPSDHEIILTDTVGFIRE 408 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SH---RELKVNIHDLLKEIAKRSSRLILILNK 139 K R + ++ AD++ V D SH + D+L+E+ + + +LNK Sbjct: 409 LPKELKEAFRATLEELEAADLLVAVADASHPEVEAQAAAVADILQEMELGDTPRLFVLNK 468 Query: 140 IDCVKPER 147 D V ER Sbjct: 469 WDAVSEER 476 >gi|138894843|ref|YP_001125296.1| GTP-binding protein hflX [Geobacillus thermodenitrificans NG80-2] gi|196248586|ref|ZP_03147287.1| GTP-binding proten HflX [Geobacillus sp. G11MC16] gi|134266356|gb|ABO66551.1| GTP-binding protein hflX [Geobacillus thermodenitrificans NG80-2] gi|196212311|gb|EDY07069.1| GTP-binding proten HflX [Geobacillus sp. G11MC16] Length = 415 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 7/152 (4%) Query: 4 GEITFFNEHKDFVQDN---SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 GE+ EH+ ++ +R+ VALVG TNAGKSTL NR A T + Sbjct: 175 GELRRVAEHRGRYRERRQKNRAFQVALVGYTNAGKSTLFNRLTAADSLEENLLFATLDPL 234 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS----HRELK 116 R + ++ DT G + R + +K AD++ VVDS + E + Sbjct: 235 TRKCILPCGYTVLLTDTVGFIQDLPTTLVAAFRSTLEEVKEADLLLHVVDSSHPDYAEHE 294 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERL 148 + LL E+ S + + NK D P+ L Sbjct: 295 RTVLQLLAELGASSIPTVTVYNKSDRQAPQFL 326 >gi|4467661|emb|CAB37782.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K + I+ ++ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KGALLSKEIKAINLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + I K+F +S + G + +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----IPKSFNISVSHNRGINALIDAILRALDL 168 >gi|317501762|ref|ZP_07959948.1| small GTP-binding protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331088717|ref|ZP_08337627.1| hypothetical protein HMPREF1025_01210 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896795|gb|EFV18880.1| small GTP-binding protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330407240|gb|EGG86743.1| hypothetical protein HMPREF1025_01210 [Lachnospiraceae bacterium 3_1_46FAA] Length = 410 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + G NAGKS+++N G +++V+ K TT + + + +V +DTPGI + Sbjct: 14 IGFFGRRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKSMELLPIGPVVMIDTPGI-DD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + KL ++ S+ T+ D LV+D+ + LL++I + ++ LNK + Sbjct: 73 EGELGKLRVKKSYQTLNKTDAAVLVIDAAAGVSGEDKKLLEKIKAKKIPYVVALNKKELA 132 Query: 144 KPERL 148 + E + Sbjct: 133 EEEDM 137 >gi|325982003|ref|YP_004294405.1| GTP-binding proten HflX [Nitrosomonas sp. AL212] gi|325531522|gb|ADZ26243.1| GTP-binding proten HflX [Nitrosomonas sp. AL212] Length = 449 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 102/237 (43%), Gaps = 52/237 (21%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 + VALVG TNAGKSTL+ G++V + T + VR + +I+ DT G Sbjct: 222 NASVALVGYTNAGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPASVPRILVSDTVGFI 281 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCL--VVDS-----HRELKVNIHDLLKEIAKRSSRLI 134 K+ H L+ + + D L ++D+ R+L+V + +L+EIA + I Sbjct: 282 --KNLPHGLVASFKSTLDEALDASLLLHIIDASDPGYERQLEVT-NTVLEEIAAQDIPRI 338 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 I NKID V QAE C+ VL TL A V S Sbjct: 339 RIFNKIDHVGD--TAAQAE---------------------CEAVLK----TLYPACIVMS 371 Query: 195 ADQISDLPMFH------FTAEITREKLFL-----HLHKEIPYSSCVVTEKWEEKKDG 240 A + D+ H F ++ ++LFL L +I Y++C V EE+ DG Sbjct: 372 ARRPDDVANLHQQIVAFFQQDLVEDELFLPWTAQQLRSQI-YANCKV---LEERADG 424 >gi|251796400|ref|YP_003011131.1| GTP-binding protein EngA [Paenibacillus sp. JDR-2] gi|247544026|gb|ACT01045.1| small GTP-binding protein [Paenibacillus sp. JDR-2] Length = 440 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A+VG N GKST+ NR VG +++IV K TR + +DT GI + Sbjct: 5 VIAIVGRPNVGKSTIFNRVVGDRLAIVEDKPGVTRDRLYSPGEWNGKAFSIVDTGGIEID 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 +D K + + I+ AD++ + D+ + + D + ++ RS + ++L +NK+D Sbjct: 65 GEDEIMKSVRMQAELAIEEADVIIFMCDAKTGV-THADDEVAQMLFRSHKPVVLAVNKVD 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + R+ E E + VS + G G D+L+ LP Sbjct: 124 NLN--RMDEIYEFYG--LGFGTPIAVSGSHGLGIGDMLDAAIEKLP 165 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 VAL+G N GKS+LVN +G + IV++ TTR + + V +DT G+ Sbjct: 179 VALIGRPNVGKSSLVNALLGEERVIVSNVAGTTRDAIDTPFERDGQKYVLIDTAGMRKRG 238 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILN 138 +S K + + I+ AD+V ++++ E +I E K S I ++N Sbjct: 239 KVYESTEKYSVMRALKAIERADVVLVLINGEEGIIEQDKHIAGYAHEAGKAS---IFVVN 295 Query: 139 KIDCV 143 K D V Sbjct: 296 KWDVV 300 >gi|307822499|ref|ZP_07652730.1| ribosome-associated GTPase EngA [Methylobacter tundripaludum SV96] gi|307736103|gb|EFO06949.1| ribosome-associated GTPase EngA [Methylobacter tundripaludum SV96] Length = 465 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 14/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL N ++ ++V TR G V + + +DT GI + Sbjct: 4 VIALVGRPNVGKSTLFNYLTRSRDALVADFSGLTRDRQYGRVKLGDRPCLVVDTGGIADD 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKI 140 + + ++ ADIV +VD+ L + I D L+++ K +IL+ NK+ Sbjct: 64 AEGIESFARKQVQVALEEADIVFFMVDAREGLSASDKVIADTLRKLQK---PVILVTNKV 120 Query: 141 DCVKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D L+ + A+ + + + ++A+ G G ++L + LP Sbjct: 121 DG------LDASTAASDFYSLALGEPVKIAASHGKGIPELLEKVNQLLP 163 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 6/162 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTLVNR +G + IV + TTR + + +DT G+ Sbjct: 178 IAVVGRPNVGKSTLVNRLLGEERVIVFDEPGTTRDSIYIPFERNGKKFTLIDTAGMRRRS 237 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + S I+ A++V ++D+ + LL + + LI+ LNK D Sbjct: 238 KIAETIEKFSVIKSLQAIEKANVVIYLIDAREGITDQDAHLLGLVLEAGRALIIGLNKWD 297 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 + ++ ++ KL F+E + +SA G G + + Sbjct: 298 GISADQKATIHRQLDVKLSFLEFAEKHPISALHGSGVGKMFD 339 >gi|297566657|ref|YP_003685629.1| tRNA modification GTPase TrmE [Meiothermus silvanus DSM 9946] gi|296851106|gb|ADH64121.1| tRNA modification GTPase TrmE [Meiothermus silvanus DSM 9946] Length = 436 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVGA NAGKS+L+N +G + +IVT TTR + + I +DT G+ Sbjct: 222 LALVGAPNAGKSSLLNALLGYERAIVTPIPGTTRDYLEAPLEIAGVPITAVDTAGVRQTD 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D + + + + AD+V +VD+ Sbjct: 282 DPVERSGVERALKIAQEADLVLYLVDA 308 >gi|254504318|ref|ZP_05116469.1| putative GTPase [Labrenzia alexandrii DFL-11] gi|222440389|gb|EEE47068.1| putative GTPase [Labrenzia alexandrii DFL-11] Length = 405 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V L+GA NAGKS+L+N G V+IVT + TTR ++ + + +DT G Sbjct: 170 RSGLQVVLMGAPNAGKSSLLNAIAGRDVAIVTEEAGTTRDVIEVHLDLGGYPVTLVDTAG 229 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 + + IR + + AD+V V+ Sbjct: 230 LRETDGIVEREGIRRAEERGRQADLVLWAVE 260 >gi|122702277|emb|CAL88329.1| GTPase [Helicobacter pylori] Length = 170 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ +VD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISVLIDAILHALGL 168 >gi|119474821|ref|ZP_01615174.1| GTP-binding protein HflX [marine gamma proteobacterium HTCC2143] gi|119451024|gb|EAW32257.1| GTP-binding protein HflX [marine gamma proteobacterium HTCC2143] Length = 433 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 28/228 (12%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A V + T +R + IV DT G Sbjct: 200 TVSLVGYTNAGKSTLFNTLTQANVYVADQLFATLDPTLRRVSIPDFGPIVLADTVGFI-- 257 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIAKRSSRLILIL 137 + HKL+ R + +D++ V+D + E + NI +L EI + + I Sbjct: 258 RHLPHKLVEAFRATLEEAAQSDLLIHVIDCADEEREDNIAQVEVVLNEIGADAIPRLEIY 317 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 NKID V + +++ + I + VSA G G D L C LA W+ Sbjct: 318 NKIDLVDSKPRIDRDKDG-----IARRVWVSAQNGSGLD--LIEQC----LAEWLG---- 362 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGSILIR 245 D+ T ++ + +L +++ + VV+E++ E+ I IR Sbjct: 363 -EDIIHGRLTLDVGQGRLRAAFYQQ----NVVVSERYTEQGLSDIEIR 405 >gi|37528359|ref|NP_931704.1| GTPase ObgE [Photorhabdus luminescens subsp. laumondii TTO1] gi|81833859|sp|Q7MYX6|OBG_PHOLL RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|36787797|emb|CAE16912.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 391 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 17/173 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G NAGKST + AK + + T + + + E V D PG+ Sbjct: 162 VGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEQSFVVADIPGLIKGA 221 Query: 85 DSYHKLMIRL-----SWSTIKHADIVCLV-----VDSHRELKVNIHDLLKEIAKRSSRLI 134 L IR + H +C V V++ R + + +++A++ R Sbjct: 222 SDGAGLGIRFLKHLERCRVLLHLIDICPVDGSDPVENARIIVNELQQYSEKLAEKPRR-- 279 Query: 135 LILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHG----CDDVLNYL 182 L+ NK+D ++PE ++A+ IA++L + +M+SA G C D++ ++ Sbjct: 280 LVFNKVDLLEPEEARQRAQAIADELGWEGDFYMISAINRQGVKALCWDIMEFM 332 >gi|119478241|ref|ZP_01618297.1| GTP-binding protein, HSR1-related [marine gamma proteobacterium HTCC2143] gi|119448750|gb|EAW29994.1| GTP-binding protein, HSR1-related [marine gamma proteobacterium HTCC2143] Length = 443 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 14/148 (9%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 ME G T + Q S G VALVG TNAGKSTL+ G++V + T + Sbjct: 199 MEAGRDT----QRSRRQGQSGLGQVALVGYTNAGKSTLMRALTGSEVLVANQLFATLDTK 254 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVV------DSHRE 114 VR + E +++ DT G K+ H L+ ST+ A L++ D E Sbjct: 255 VRTLHPESVPRVLVTDTVGFI--KNLPHGLVASFK-STLDEALSASLLLHVVDAGDPGFE 311 Query: 115 LKVNIHD-LLKEIAKRSSRLILILNKID 141 +++ + D +L EI S I I NKID Sbjct: 312 MQLEVTDKVLAEIGADSVPRIRIFNKID 339 >gi|99082704|ref|YP_614858.1| tRNA modification GTPase TrmE [Ruegeria sp. TM1040] gi|122984065|sp|Q1GCM0|MNME_SILST RecName: Full=tRNA modification GTPase mnmE gi|99038984|gb|ABF65596.1| tRNA modification GTPase trmE [Ruegeria sp. TM1040] Length = 428 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 45/97 (46%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG+ N GKSTL+N G +I + TTR ++ + + LDT G+ Sbjct: 216 VAIVGSPNVGKSTLLNALAGRTAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETD 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD 121 D + IRL+ + ADI + + + + + Sbjct: 276 DHVEGIGIRLAQERAERADIRVFLAEEDESFSIQMRE 312 >gi|317401615|gb|EFV82241.1| tRNA modification GTPase mnmE [Achromobacter xylosoxidans C54] Length = 450 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 21/175 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+N G V+IVT TTR V + + +DT G+ + Sbjct: 222 VVLAGQPNVGKSSLLNALAGDDVAIVTPIAGTTRDKVVQQIHIDGVPLHIVDTAGLRETE 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + I SW I+ AD++ + D+ + EL I L + ++ + NK+D Sbjct: 282 DTVESIGIARSWQEIERADVILHLQDATQPGDELDAQITARLPP----RTPVLKVFNKVD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LL A A +SA +G G D + L L +A W A+ Sbjct: 338 ------LLSTAFAAGP-----GELGISAKRGAGLDALRAEL---LRIAGWNPGAE 378 >gi|283797999|ref|ZP_06347152.1| Obg family GTPase CgtA [Clostridium sp. M62/1] gi|291074300|gb|EFE11664.1| Obg family GTPase CgtA [Clostridium sp. M62/1] gi|295091855|emb|CBK77962.1| Obg family GTPase CgtA [Clostridium cf. saccharolyticum K10] Length = 430 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 34/219 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 V LVG N GKSTL++R A+ I + TT + G+V E Q V D PG+ Sbjct: 161 VGLVGFPNVGKSTLLSRVSNARPKIANYHF-TTLNPHLGVVDLSEGQGFVMADIPGLIEG 219 Query: 84 KDSYHKLMIRLSWSTIKHAD---IVCLVVDS----HRELKVNIHDLLKEIAKRSSRL--- 133 + L +S +KH + ++ VVD+ R+ +I + +E+ + L Sbjct: 220 ASQ----GVGLGYSFLKHIERTKVLVHVVDAASTEGRDPVADIKAINEELRAYNPELLKR 275 Query: 134 --ILILNKIDC--VKPERLLEQAEIANKLVFIE---KTFMVSATKGHGCDDVL---NYLC 183 ++ NKID V PE E K F + F +SA G G ++L N L Sbjct: 276 PQVIAANKIDAIYVDPESGEENPVERLKKAFEPEGIQVFAISAVSGQGVKELLYHVNELL 335 Query: 184 STLPLAPWVYSAD-----QISDLPMFHFTAEITREKLFL 217 T+ AP ++ + Q +LP +T E + +++ Sbjct: 336 KTVDQAPVIFEKEFEYQYQAENLP---YTVEKNEDGVYV 371 >gi|268591205|ref|ZP_06125426.1| putative GTP-binding protein [Providencia rettgeri DSM 1131] gi|291313175|gb|EFE53628.1| putative GTP-binding protein [Providencia rettgeri DSM 1131] Length = 290 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 14/147 (9%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 FFN+ + + S + L+G T AGKS+L+N +++S V++ TR R ++ Sbjct: 22 FFNQLNSLI---NYSPTIGLMGKTGAGKSSLINALFQSQLSSVSNVSGCTRQAQRFSMTM 78 Query: 68 KESQIVFLDTPGIFNAKD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--- 121 + F+D PG+ + + YH+L L + D++ V+ + + Sbjct: 79 SNHTLTFIDLPGVGESLERDREYHQLYHNL----LPELDLIIWVLKADDRAWSSDEQCYR 134 Query: 122 -LLKEIAKRSSRLILILNKIDCVKPER 147 L ++ + SR + +LN+ D ++P R Sbjct: 135 FLTEQCGYQPSRFLFVLNQADKIEPCR 161 >gi|239616804|ref|YP_002940126.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] gi|239505635|gb|ACR79122.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 409 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 14/166 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A G N GKS+L+N VG VSIV+ TT + + + + +DTPG+ + Sbjct: 11 LAFFGKRNVGKSSLINALVGQDVSIVSDVPGTTTDPVYKSLEIHPIGPVTVVDTPGVDDV 70 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD--LLKEIAKRSSRLILILNKID 141 + +L ++ + + ADI LVVD + N ++ L+++ K ++ +NKID Sbjct: 71 GE-LGELRVKRALKAMYKADIAILVVDQ----RWNEYEDWLIEQFIKMDLPFVIAVNKID 125 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +EI K+ F VS K G +D+ + LP Sbjct: 126 -----QSWNTSEIEPKVSPYPHCF-VSGLKKTGIEDLRRLISENLP 165 >gi|238027075|ref|YP_002911306.1| GTP-binding protein EngA [Burkholderia glumae BGR1] gi|237876269|gb|ACR28602.1| GTPase family protein [Burkholderia glumae BGR1] Length = 448 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 9/160 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGARPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ AD+V +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VKPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLN 180 +K +A + + +SA G G D++N Sbjct: 124 MK------YTAVAADFYELGLGDPRAISAAHGDGVTDMIN 157 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 8/175 (4%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E +D Q SR +A+VG N GKSTLVN +G I TTR + Sbjct: 170 ESEDAAQ--SRGVKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGK 227 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 +DT G+ ++ K + + +I A++V L++D+ +++ + + Sbjct: 228 PYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDAHIAGFVV 287 Query: 128 KRSSRLILILNKIDCVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 ++ L++ +NK D + R +A++ KL F+E K +SA + G +L Sbjct: 288 EQGRALVVGVNKWDGLDSHARERTKADLTRKLKFLEFAKFHFISAAEKTGIGPLL 342 >gi|222086678|ref|YP_002545212.1| GTP-binding protein [Agrobacterium radiobacter K84] gi|254783132|sp|B9J7W1|DER_AGRRK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221724126|gb|ACM27282.1| GTP-binding protein [Agrobacterium radiobacter K84] Length = 475 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 S VA+VG N GKSTL NR VG K+++V TR G + + +DT G+ Sbjct: 2 SFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEAKLIDLRFRIVDTAGLE 61 Query: 82 NAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 A + + +R I AD+ VVD+ L L + + KR ++L+ NK Sbjct: 62 EADEETLEGRMRAQTELAIDEADLTLFVVDAKMGLTHVDKTLAEMLRKRGRPVVLVANK 120 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 22/183 (12%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D +R VA+VG NAGKSTL+NRF+G + + TR + + + + DT Sbjct: 201 DETRPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVDWTWRGRTVKMFDT 260 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ + KL + + I+ A+ V ++ D+ + ++ + + + Sbjct: 261 AGMRRKARVTEKLEKLSVADTLRAIRFAETVVIIFDATIPFEKQDLQIVDLVIREGRAAV 320 Query: 135 LILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 + NK D + K +RLL QA + ++ G G D ++ + Sbjct: 321 IAFNKWDMIEDRQAVLADLREKTDRLLPQARGI-------RAVPIAGQTGDGLDRLMQAI 373 Query: 183 CST 185 T Sbjct: 374 VDT 376 >gi|81300391|ref|YP_400599.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 7942] gi|93141330|sp|Q8KPU2|MNME_SYNE7 RecName: Full=tRNA modification GTPase mnmE gi|81169272|gb|ABB57612.1| tRNA modification GTPase trmE [Synechococcus elongatus PCC 7942] Length = 462 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 17/129 (13%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV------ 73 R+G +A+VG N GKS+L+N + +IVT TTR +V ESQ++ Sbjct: 221 RTGLKIAIVGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDLV-------ESQLIVGGIPV 273 Query: 74 -FLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 LDT GI D ++ + S + AD+V L +D+ + + ++ R Sbjct: 274 QVLDTAGIRETSDQVEQIGVERSRRAAQSADLVLLTIDASAGWSAEDQTIWEAVSDRP-- 331 Query: 133 LILILNKID 141 ++L++NK D Sbjct: 332 ILLVINKRD 340 >gi|326388931|ref|ZP_08210513.1| Small GTP-binding protein domain [Novosphingobium nitrogenifigens DSM 19370] gi|326206531|gb|EGD57366.1| Small GTP-binding protein domain [Novosphingobium nitrogenifigens DSM 19370] Length = 351 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 15/174 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 LVG NAGKST +N+ A+ + + TTR + G+V + V D PG+ Sbjct: 162 AGLVGLPNAGKSTFINQISNARAKVGDYAFTTTRPQL-GVVRHHNREFVLADIPGLIAGA 220 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAK---RSSRLILIL 137 + R I+ ++ ++D H E + D L+ RL+ L Sbjct: 221 ADGAGIGDRF-LGHIERCRVLIHLIDIHGTDPAEAMAIVADELEAYGAGLDEKPRLV-AL 278 Query: 138 NKIDCVKPE--RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 NKID V E R +A E+ F +S G G D +L+ + LP A Sbjct: 279 NKIDLVDAELVRAFTDELMAAG---AERVFPISGATGKGMDALLDAVLEYLPAA 329 >gi|298368463|ref|ZP_06979781.1| ribosome-associated GTPase EngA [Neisseria sp. oral taxon 014 str. F0314] gi|298282466|gb|EFI23953.1| ribosome-associated GTPase EngA [Neisseria sp. oral taxon 014 str. F0314] Length = 492 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 A++G N GKSTLVN +G + I TTR + I E+E + +DT G+ Sbjct: 186 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDTAGVRRRG 244 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++ LV+D+ +++ + + L++ +NK D Sbjct: 245 KVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWD 304 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + ER + + +I+ KL F++ K +SA K G D + + + + Sbjct: 305 GISEERREQIKRDISRKLYFLDFAKFHFISALKERGIDGLFDSIQAA 351 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 11 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPV 70 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD L Sbjct: 71 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGL 103 >gi|229824833|ref|ZP_04450902.1| hypothetical protein GCWU000182_00182 [Abiotrophia defectiva ATCC 49176] gi|229790836|gb|EEP26950.1| hypothetical protein GCWU000182_00182 [Abiotrophia defectiva ATCC 49176] Length = 445 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A++G N GKS+++NR +G IV+ TTR + + + +DT GI Sbjct: 179 IAIIGKPNVGKSSIINRLLGENRVIVSDVAGTTRDAIDTRIRRNGKDYIMIDTAGIRRKS 238 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ I + S ++ ADIV LV+D+ + + +R +I+ +NK D Sbjct: 239 RIKEDIEYYSIVRTVSAVERADIVVLVIDATEGITEQDAKIAGIAHERGKGIIVAVNKWD 298 Query: 142 CVK 144 ++ Sbjct: 299 LIE 301 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 6/166 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N+ G+ +SIV TR + +DT GI + Sbjct: 4 IVAIVGRPNVGKSTLFNKLAGSDISIVKDTPGVTRDRIYADAEWLNKAFTMIDTGGIEPD 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D M + I AD++ + D L + + + + K ++L++NK+D Sbjct: 64 TSDMMLANMREQAEIAIDTADVIIFITDVKTGLVDSDNQVAHMLRKSKKPVVLVVNKVD- 122 Query: 143 VKPERLLEQAEIANKL-VFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + +QA++ + + + F +S+ G D+L+ + P Sbjct: 123 ---NPVKQQADVYEFYNLGLGEPFPISSVNQTGIGDMLDEVIKHFP 165 >gi|169596815|ref|XP_001791831.1| hypothetical protein SNOG_01177 [Phaeosphaeria nodorum SN15] gi|160707379|gb|EAT90826.2| hypothetical protein SNOG_01177 [Phaeosphaeria nodorum SN15] Length = 385 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 21/174 (12%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VAL+GA NAGKS+L+NR VG +IV+ + TTR +V V + D G Sbjct: 98 RNGISVALLGAPNAGKSSLLNRIVGRDAAIVSQEAGTTRDVVEVGVDLGGWLVKIGDMAG 157 Query: 80 IFNAKDSYHKLMIRLSWSTIKHA-------DIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 + A + + + IK A D++ +V D+ E + + K+ Sbjct: 158 LRRAGLVGAEAVGAVEQEGIKRAKQRALESDVLIVVQDATAETDPEVMETAKKCVDLGVN 217 Query: 133 LILILNKIDCVKPERLLE-------QAEI---ANKLVFIEKTFMVSATK---GH 173 +++ +NKID + LE Q+E+ ++++ FI +AT GH Sbjct: 218 VVVAINKIDQLDNVAFLEHTWAMRMQSELGISSDRVTFISCKASAAATSSDPGH 271 >gi|110633049|ref|YP_673257.1| GTP-binding protein EngA [Mesorhizobium sp. BNC1] gi|123162694|sp|Q11KI3|DER_MESSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110284033|gb|ABG62092.1| small GTP-binding protein [Chelativorans sp. BNC1] Length = 470 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 24/199 (12%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ +A+VG N GKSTL+N +G + + + TR + + +I DT Sbjct: 194 DPTKPIRIAVVGRPNVGKSTLINALIGEERLLTGPEAGITRDSISVDWHWRGREIKLFDT 253 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELK---VNIHDLLKEIAKRSS 131 G+ ++ KL + S I+ A++V +V D+ + + I DL I + Sbjct: 254 AGMRRKARVQEKLEKLSVGESLRAIRFAEVVIIVFDATMPFEKQDLQIADL---IVREGR 310 Query: 132 RLILILNKIDCV--KPERLLEQAEIANKLVFIE---KTFMVSATKGHGCDDVL------- 179 ++ NK D + + E+L E E ++L+ ++ +SA G G D +L Sbjct: 311 APVIAFNKWDLIENRQEKLAELREKTDRLLPQARGLRSVPISAETGRGLDQLLEAAVSTH 370 Query: 180 ---NYLCSTLPLAPWVYSA 195 N T PL W+ +A Sbjct: 371 VVWNRRVPTGPLNRWLEAA 389 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 VA+VG N GKSTL NR VG ++++V TR R + S + + F +DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNRLVGRRIALVDDTPGVTRD--RRVHSARLLDLRFDVIDTAGLEE 62 Query: 83 AKDSYHKLMIRLSWST-IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A +R T I AD+V ++D+ L + + + ++ ++L+ NK D Sbjct: 63 AAAPTLAGRMRAQTETAIDEADLVLFMIDARAGLMPDDRAFAEVVRRKGKPVVLVANKTD 122 Query: 142 C 142 Sbjct: 123 V 123 >gi|62320818|dbj|BAD93758.1| hypothetical protein [Arabidopsis thaliana] Length = 370 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 75/195 (38%), Gaps = 38/195 (19%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L NR VG +IV + TR + G + + V +DT G+ Sbjct: 161 VAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTVS 220 Query: 85 DSYHKLMIRLSWST------------------------------IKHADIVCLVVDSH-- 112 S +M L+ ST + + ++ VVD Sbjct: 221 KSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQAG 280 Query: 113 -RELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATK 171 V I D L+ K S +IL C P + L QA L F +SA Sbjct: 281 PSGADVEIADWLR---KYYSHKYIILAVNMCESPRKGLMQASEFWSLGF--TPIPISALS 335 Query: 172 GHGCDDVLNYLCSTL 186 G G ++L+ +CS L Sbjct: 336 GTGTGELLDLVCSGL 350 >gi|77464808|ref|YP_354312.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides 2.4.1] gi|123590764|sp|Q3IYH3|MNME_RHOS4 RecName: Full=tRNA modification GTPase mnmE gi|77389226|gb|ABA80411.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides 2.4.1] Length = 428 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 45/86 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VGA NAGKSTL+N + +I + TTR ++ + + FLDT G+ + Sbjct: 215 VAIVGAPNAGKSTLLNALARREAAITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTS 274 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 D L I + + K AD+ ++D Sbjct: 275 DLVESLGIERAVTRAKAADLRVFLLD 300 >gi|303228568|ref|ZP_07315395.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-134-V-Col7a] gi|302516747|gb|EFL58662.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-134-V-Col7a] Length = 461 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG NAGKS+L+N + +IVT TTR + ++ + + +DT G Sbjct: 221 RDGITTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D+ L + + I ADIV V+D L ++L ++ ++ +++LNK Sbjct: 281 IRDTQDTVEALGVERARDYINKADIVLCVIDGSTPLTSEEIEILTSVSGLNT--MVLLNK 338 Query: 140 IDCVK 144 D + Sbjct: 339 SDVAQ 343 >gi|85860147|ref|YP_462349.1| GTP-binding protein EngA [Syntrophus aciditrophicus SB] gi|85723238|gb|ABC78181.1| GTP-binding protein [Syntrophus aciditrophicus SB] Length = 447 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 15/173 (8%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 R+ VA+VG N GKSTL NR +IV TR + + +DT G Sbjct: 3 RNTIVAIVGRPNVGKSTLFNRLSQKSKAIVIDVPGATRDRNYADCTWHGRRYTLIDTGGF 62 Query: 81 FNAKDSYHKLMIRLSWST---IKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLI 134 A S ++I++ T I+ ADI+ ++D L + I LL+E K ++ Sbjct: 63 EPA--STETILIQMREQTHLAIEEADIIIFLMDGRDGLTPADIEIVQLLREGGK---KVF 117 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +NK+D + E LL + + + + +SA G G D+++ L + LP Sbjct: 118 YAVNKVDGPRHEGLLPEF----YRLGVSRIHDISAQHGLGIDELMEDLSACLP 166 Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+G N GKS+L+N+ +G + +I TTR + + + +DT GI Sbjct: 184 IALIGKPNVGKSSLLNKILGYERTIANPTPGTTRDAIDTPFEFDGHRYLLIDTAGIRKKS 243 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 S K + + T+ DI L++D+ + + ++ +I+++NK D Sbjct: 244 RISLSLEKYSVIQALKTLDRCDIALLLIDAEEGITDQDTKIAGLAFEKGRAVIIVVNKWD 303 Query: 142 CV 143 V Sbjct: 304 LV 305 >gi|327310750|ref|YP_004337647.1| small GTP-binding protein [Thermoproteus uzoniensis 768-20] gi|326947229|gb|AEA12335.1| small GTP-binding protein [Thermoproteus uzoniensis 768-20] Length = 565 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 15/169 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +A VG N GKSTL G V + +T V I + +++ +D PG+FN Sbjct: 5 IAFVGPPNVGKSTLFYALTGRYVKTANYPGKTLEMNVGKI---RGTEVELVDLPGVFNPQ 61 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 KD L +R ++ +VV + +K + L E RS ++L++N +D Sbjct: 62 SPKDEDEALALR---EALEGPYDGVVVVGAPHAIKEALA--LAEHIGRSRPVVLVVNMVD 116 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 PE + E++ K+ F SA KG G + +L S P P Sbjct: 117 LGAPE--MPSEELSAKMGI--PVFYTSAVKGLGVLQLRRFLASWAPAGP 161 >gi|313896288|ref|ZP_07829841.1| ribosome biogenesis GTPase Der [Selenomonas sp. oral taxon 137 str. F0430] gi|312975087|gb|EFR40549.1| ribosome biogenesis GTPase Der [Selenomonas sp. oral taxon 137 str. F0430] Length = 441 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 1/127 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 VA+VG N GKSTL N+ ++SIV TR + + +DT GI F+ Sbjct: 5 IVAVVGRPNVGKSTLFNQIGKKRISIVDDMPGVTRDRIYMDAEWLNHEFTIIDTGGIEFD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + M + ++ AD++ +VD L + ++ + + + + +IL +NKID Sbjct: 65 ESDHILRSMRSQAELAMEEADVILFLVDGRAGLTASDEEVGRLLRRTNKPVILAVNKIDS 124 Query: 143 VKPERLL 149 + E L+ Sbjct: 125 FERENLI 131 Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKS+LVNR +G + IV+ TTR + + ++ + +DT G+ Sbjct: 178 AIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTRDGAKYLLIDTAGMRRK 237 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + S I A +V +V+++ + + + + +I+++NK Sbjct: 238 GKITLPVERYSVMRSLRAIDRAGVVLMVINAAEGILEQDTKIAGYVHESGKGVIIVVNKW 297 Query: 141 DCVKPER 147 D PE+ Sbjct: 298 DIF-PEK 303 >gi|260200776|ref|ZP_05768267.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] gi|289443171|ref|ZP_06432915.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] gi|289416090|gb|EFD13330.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] Length = 285 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR V + V DT G Sbjct: 28 VVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPN 87 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +L+ + ++ AD V LVVD+ + + + + L NK+D Sbjct: 88 AKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSE 147 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K E + A + + + + + +SA G G D+L+ + + LP Sbjct: 148 KGES--DAAALWS--LGLGEPHAISAMHGRGVADLLDGVLAALP 187 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 VALVG N GKS+L+N+ G + S+V TT V ++ F+DT G+ Sbjct: 202 VALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGL 257 >gi|94429026|gb|ABF18942.1| GTP-binding protein [uncultured bacterium pFosLip] Length = 249 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 74/171 (43%), Gaps = 17/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N A V + T VR + +IV DT G Sbjct: 13 TVALVGYTNAGKSTLFNALTQADVYVEDKLFATLDPTVRRLELPDGREIVLADTVGFV-- 70 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDS------HRELKVNIHDLLKEIAKRSSRLIL 135 +D H+L+ R + + AD++ ++D+ R +VN +LKE+ I Sbjct: 71 RDLPHELIAAFRSTLQEAREADLILHLIDASDGSRWQRVRQVNA--VLKELDADRVPQIR 128 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + NKID L + +AN + +SA G G +L + L Sbjct: 129 VYNKIDM-----LDRRPRVANNRHGEGRAVWLSAKTGEGVPFLLEAISERL 174 >gi|313904194|ref|ZP_07837573.1| ribosome-associated GTPase EngA [Eubacterium cellulosolvens 6] gi|313470996|gb|EFR66319.1| ribosome-associated GTPase EngA [Eubacterium cellulosolvens 6] Length = 443 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 4/165 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N G ++SIV TR + V+ + +DT GI + Sbjct: 5 IVAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVTWLNHEFTMIDTGGIEPD 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + D K M + ++ AD++ + D + L + + K ++L +NK+D Sbjct: 65 SSDIILKQMREQAVIAMETADVIIFITDVRQGLVDADLQVATMLRKSKKPVVLAVNKVDD 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K + + E N + I + +SA G D+L+ + S P Sbjct: 125 FKTQE-IGIYEFYN--LGIGEPHAISAEGKMGLGDLLDVVISHFP 166 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKS+++N+ +G IV+ TTR + ++ F+DT G+ Sbjct: 180 IAIVGKPNVGKSSIINKLLGTNRVIVSDIAGTTRDAIDTVIKRNGKDYTFIDTAGLRRKS 239 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + I + + ++ DI +V+D+ + + R LI+ +NK D Sbjct: 240 KIKEELERYSIVRTVAAVERCDIAVVVIDAVEGITEQDAKIAGIAHDRGKGLIIAVNKWD 299 Query: 142 CVKPE 146 ++ + Sbjct: 300 AIEKD 304 >gi|300114862|ref|YP_003761437.1| ribosome-associated GTPase EngA [Nitrosococcus watsonii C-113] gi|299540799|gb|ADJ29116.1| ribosome-associated GTPase EngA [Nitrosococcus watsonii C-113] Length = 464 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 44/91 (48%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKSTL NR ++ ++V + TR G+ E +DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADQPGVTRDRQYGLAYCGEQSFFVVDTGGIMEQE 64 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHREL 115 LM + I+ AD++ +VD+ L Sbjct: 65 SEIGSLMRGQAQLAIEEADVIFFLVDAREGL 95 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKSTLVNR +G + + + TTR + +DT GI Sbjct: 179 LAVIGRPNVGKSTLVNRILGEERVLSSEIPGTTRDSISIPFRHHGRDYTLVDTAGIRRRS 238 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K + S +I A +V LV+D+H + L I + +++ +NK D Sbjct: 239 RILDRVEKFSVIQSLQSIAIAQVVILVIDAHDSVVEQDLHLAGVILESGKGVVIAVNKWD 298 Query: 142 CVKPE-RLLEQAEIANKLVFI--EKTFMVSATKGHGCDDVL 179 + E R + ++ +L F+ + +SA G G D+ Sbjct: 299 GLPLEQRQRVKKDLDRRLPFLVFARIHFISALHGSGVGDLF 339 >gi|289811471|ref|ZP_06542100.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 119 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 6/108 (5%) Query: 8 FFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE 67 F NE + V VALVG N GKSTL NR + ++V TR G Sbjct: 5 FLNEALNMVP------VVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEV 58 Query: 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL 115 + + + +DT GI +D M S I+ AD+V +VD+ L Sbjct: 59 EGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGL 106 >gi|260431964|ref|ZP_05785935.1| tRNA modification GTPase TrmE [Silicibacter lacuscaerulensis ITI-1157] gi|260415792|gb|EEX09051.1| tRNA modification GTPase TrmE [Silicibacter lacuscaerulensis ITI-1157] Length = 428 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 46/96 (47%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG NAGKSTL+N G + +I + TTR ++ + + LDT G+ Sbjct: 216 VAIVGPPNAGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETG 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 D L I L+ + AD+ + + +L ++ Sbjct: 276 DHVENLGIALARERAEKADLRVFLTEDPDQLGISFQ 311 >gi|209524294|ref|ZP_03272844.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328] gi|209495385|gb|EDZ95690.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328] Length = 469 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R+G VA+VG N GKS+L+N + + +IVT TTR +V + I LDT G Sbjct: 223 RTGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAG 282 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + D ++ + S + AD+V +D +++ +++ R +I+++NK Sbjct: 283 IRKSDDKVEQIGVERSQIAAQSADLVLFTLDCENGWTEAENEIYQQVKNRP--IIIVMNK 340 Query: 140 IDCVKPERL--LEQAEIANKLVFIEKTFMV--SATKGHGCDDV 178 D + +L L Q+ I N+L I+ + ++ +AT G D+ Sbjct: 341 SDRLSSAQLENLRQS-IINQL-DIKPSLIIATAATLNQGITDL 381 >gi|187478827|ref|YP_786851.1| GTP-binding protein [Bordetella avium 197N] gi|115423413|emb|CAJ49947.1| GTP-binding protein [Bordetella avium 197N] Length = 368 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 11/163 (6%) Query: 20 SRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +R G V+LVG TNAGKSTL N A T + R E +V DT Sbjct: 185 ARGGALSVSLVGYTNAGKSTLFNALTRAGAYAADQLFATLDTTTRRFWIEGAGSVVLSDT 244 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSSRL 133 G R + HAD++ VVD+ RE ++ ++ +L EI Sbjct: 245 VGFIRELPPNLIAAFRATLEETVHADLLLHVVDAASPQREEQIFEVNKVLAEIGAADIPT 304 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 IL+ NKID E +E+ + I + F VSAT+ G D Sbjct: 305 ILVYNKIDRAGLEPRVER----DAHGTIARVF-VSATERAGLD 342 >gi|330800057|ref|XP_003288056.1| hypothetical protein DICPUDRAFT_152248 [Dictyostelium purpureum] gi|325081944|gb|EGC35443.1| hypothetical protein DICPUDRAFT_152248 [Dictyostelium purpureum] Length = 503 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 12/133 (9%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +A+VG N+GKS+L+N K SIV+ TTR IV + +V DT G Sbjct: 244 RDGASIAIVGPPNSGKSSLINLLSNRKASIVSPIAGTTRDIVEVTLDIGGYPVVIGDTAG 303 Query: 80 I-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN-------IHDLLKEIAKRSS 131 + + D K I ++ +DI + DS++ ++ + +LL I + Sbjct: 304 LRLSTNDIIEKEGIEMAKDRFNQSDIKLFLFDSNQLFNLDNNSNDNELENLLNFIDNET- 362 Query: 132 RLILILNKIDCVK 144 I+I NK D +K Sbjct: 363 --IIIFNKFDLIK 373 >gi|212715540|ref|ZP_03323668.1| hypothetical protein BIFCAT_00438 [Bifidobacterium catenulatum DSM 16992] gi|212660907|gb|EEB21482.1| hypothetical protein BIFCAT_00438 [Bifidobacterium catenulatum DSM 16992] Length = 496 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 12/175 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG TNAGKS+L NR G+ + T + VR ++ + ++DT G Sbjct: 277 TVAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRRYAYVDTVGFVRR 336 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEI-AKRSSRLILILN 138 + + + + AD++ VVD SH + I D+L +I + I++ N Sbjct: 337 LPTQLIEAFKSTLEEVAEADLIVHVVDGSHPDPFSQIDAVDDVLADIDGVETIPTIIVFN 396 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVY 193 K D +++A + + ++VSA G G D++ + S LP AP V+ Sbjct: 397 KADR------MDEATRERIEALMPEAYIVSAFSGDGVDELRMQVESMLP-APNVH 444 >gi|294669278|ref|ZP_06734357.1| GTP-binding protein HflX [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308688|gb|EFE49931.1| GTP-binding protein HflX [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 428 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 8/128 (6%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 ALVG TN GKS+L NR A V T + R + + I+ DT G +D Sbjct: 249 ALVGYTNTGKSSLFNRLTKADVLAKNQLFATLDTTARRLYLNPSASIILTDTVGFV--RD 306 Query: 86 SYHKLMIRLSWS--TIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRLILILNK 139 H L+ S + AD++ VVD+ H +++++L+EI I++ NK Sbjct: 307 LPHGLVAAFSATLEETALADVLLHVVDAAHPEHERQIDDVNEVLREIGAGDIPQIVLYNK 366 Query: 140 IDCVKPER 147 D + PE+ Sbjct: 367 TDLLPPEK 374 >gi|302875565|ref|YP_003844198.1| small GTP-binding protein [Clostridium cellulovorans 743B] gi|307690094|ref|ZP_07632540.1| small GTP-binding protein [Clostridium cellulovorans 743B] gi|302578422|gb|ADL52434.1| small GTP-binding protein [Clostridium cellulovorans 743B] Length = 411 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +AL G NAGKS+++N ++SIV+ + TT + + I V +DT G+ + Sbjct: 14 IALFGKRNAGKSSVINAITNQQLSIVSDIEGTTTDPVYKSIEILPIGPCVIIDTAGLDDV 73 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + L + + DI +V DS + + +++ E+ K+ L++++NKID Sbjct: 74 GE-LGDLRRNKTLEVLNKTDIALIVADSTKGITGYDKEIIAEVKKKKIPLMILMNKID-- 130 Query: 144 KPERLLEQAEIAN-KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ER E EI N K F + VSA G ++V + +P Sbjct: 131 --ERNFEVNEIENLKKEFDCEVLKVSAVTKVGINEVKEKISFLIP 173 >gi|196229979|ref|ZP_03128843.1| small GTP-binding protein [Chthoniobacter flavus Ellin428] gi|196226305|gb|EDY20811.1| small GTP-binding protein [Chthoniobacter flavus Ellin428] Length = 462 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI--- 80 +A+VG N GKS+L N + ++V+ TTR + I E+ Q V +DT GI Sbjct: 151 IAIVGRPNVGKSSLTNAILNDDRTLVSPISGTTRDAI-DIPYERHGQHYVLIDTAGIRPR 209 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +S + S ++I+ ADI CLV+D+ + + + I + + I+ NK Sbjct: 210 GKVDNSVEVFSVMRSETSIRRADICCLVIDAEQGVTAQDKRIAGMIQEENKPCIVAFNKW 269 Query: 141 DCVK 144 D +K Sbjct: 270 DLIK 273 >gi|149178557|ref|ZP_01857144.1| GTP-binding protein Hflx [Planctomyces maris DSM 8797] gi|148842575|gb|EDL56951.1| GTP-binding protein Hflx [Planctomyces maris DSM 8797] Length = 450 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 13/159 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL+N GA V I T + R +I+ DT G Sbjct: 205 TVSLVGYTNAGKSTLMNALTGADVYIADQLFATLDTRTRRWELPHWGEILLSDTVGFV-- 262 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSSRLILIL 137 +D H L+ + + + AD++ VVD S+ E++ +I + +L EI IL+ Sbjct: 263 RDLPHHLVASFKSTLEEARQADLLLHVVDCSNPEVEHHIKTVNKVLDEIEIEHKNAILVF 322 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 NK D V+ L+ + + VSA G G D Sbjct: 323 NKTDKVEDRSKLDVLRLK-----YDNAISVSAVSGEGLD 356 >gi|220908618|ref|YP_002483929.1| GTP-binding proten HflX [Cyanothece sp. PCC 7425] gi|219865229|gb|ACL45568.1| GTP-binding proten HflX [Cyanothece sp. PCC 7425] Length = 553 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 9/149 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQ----IVFLDTPG 79 V LVG TNAGKSTL+N A+V T R + +++ + Q ++ DT G Sbjct: 388 VTLVGYTNAGKSTLLNVLTQAEVYTADQLFATLDPTTRRLSLADPDHQSRRDLLLTDTVG 447 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIH---DLLKEIAKRSSRLIL 135 + R + + AD + VVD SH + +IH ++L E+ R +L Sbjct: 448 FIHHLPPALMDAFRATLEEVSEADALLHVVDLSHPAWERHIHSVAEMLAELPTVPPRQLL 507 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKT 164 + NK+D V E L + + VFI T Sbjct: 508 VFNKLDQVDSETLQQAQQSYPDAVFISAT 536 >gi|187734830|ref|YP_001876942.1| small GTP-binding protein [Akkermansia muciniphila ATCC BAA-835] gi|238691864|sp|B2UMV5|DER_AKKM8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187424882|gb|ACD04161.1| small GTP-binding protein [Akkermansia muciniphila ATCC BAA-835] Length = 464 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 11/163 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 VA+VG NAGKS+LVN + + +IV++ TTR + V +DT G+ + Sbjct: 192 VAVVGRPNAGKSSLVNAILRDRRTIVSNVAGTTRDAIDVPYLHDGQPYVLIDTAGMRPRS 251 Query: 83 AKDSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D+ ++ + S I+ ADI LV+D + + IA+ I+I+NK D Sbjct: 252 RRDTSVEVFSAMRSEKAIRRADICLLVIDIAAGITQQDRRIAGIIAEEGKPCIIIVNKFD 311 Query: 142 CVKP-----ERLLE-QAEIANKLVFIEKTFMV--SATKGHGCD 176 P +R+ E + ++ +L FI + SA K G + Sbjct: 312 LFHPNASRKDRMAEVEEQVRRELFFISYAPFIATSAKKAEGVE 354 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 5/160 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FN 82 +A+VG N GKS + NR G +++IV + TR + + +DT GI Sbjct: 6 TIAIVGRPNVGKSAIFNRMAGRRIAIVHDEPGVTRDRLSAPCKITDRACKIMDTGGIGAR 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + + + + IK AD++ V+D L + + K +IL+LNK D Sbjct: 66 LSDGFAEQVEAEADIAIKTADLILFVLDCRDHLTPIDQSIADHLRKSDIPVILLLNKADH 125 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K + L E A L F + F+ SA G G ++ + L Sbjct: 126 EKQD--LNLGEFAG-LGFDDHIFL-SAAHGRGFSELASRL 161 >gi|159045994|ref|YP_001534788.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12] gi|205829136|sp|A8LPC2|MNME_DINSH RecName: Full=tRNA modification GTPase mnmE gi|157913754|gb|ABV95187.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12] Length = 429 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++GA N GKS+L+NR G + +I + TTR +V + + LDT G+ + Sbjct: 216 VAILGAPNVGKSSLLNRLAGREAAITSSIAGTTRDVVEVRLDLDGLPVTVLDTAGLRETQ 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR 113 D ++ I + + + AD+ ++++ R Sbjct: 276 DEIEQIGISRAMARAESADLRIILIEDGR 304 >gi|326403270|ref|YP_004283351.1| GTP-binding protein EngA [Acidiphilium multivorum AIU301] gi|325050131|dbj|BAJ80469.1| GTP-binding protein EngA [Acidiphilium multivorum AIU301] Length = 451 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 5/169 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+ VA+ G N GKSTL NR G ++++V + TR ++ +DT G Sbjct: 6 ARTPRVAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAG 65 Query: 80 IFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + A D+ M + + + AD+V V D+ L + + +I++ N Sbjct: 66 LEEAPPDTLPGRMRASTGTAVDEADLVLFVFDARAGLLPEDRHFAAWLRRAGKPVIVVAN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K + R A + + + + VSA G D+++ + LP Sbjct: 126 KAEG----RGGSNAALEAYELGLGEPVAVSAEHNEGVSDLIDRIIEALP 170 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL- 75 +D R +A+VG NAGKSTL+NR +G + I + TR + +++ + L Sbjct: 178 EDGERPMHLAIVGRPNAGKSTLMNRLLGEQRVITGPEPGLTRDAIAAELTDSAGRRYRLF 237 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ + KL + +K AD V L +D+H L + + I + Sbjct: 238 DTAGLRRRARVEAGLEKLSTSSTIEALKFADTVVLAIDAHEGLHDQDFTIARLIEREGRA 297 Query: 133 LILILNKIDCVK 144 ++ L K D V+ Sbjct: 298 CVIALTKWDLVE 309 >gi|300176539|emb|CBK24204.2| GTP binding protein [Blastocystis hominis] Length = 607 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 9/164 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + ++G N+GKSTL+N + I TR V + +I +DTPGI A Sbjct: 315 LTILGIPNSGKSTLLNTLLKTDRFITGSIPGLTRDTVSTEIEFHNRRIRVVDTPGIPKAD 374 Query: 85 D----SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 S + L + + + ++ +V L++D R L + L KE+ + L +ILNK Sbjct: 375 GVLPPSLNSLSVFHAHKQLDYSHVVALILDGSRLLTKHDLALAKEVLDKGRGLFVILNKS 434 Query: 141 DCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDVL 179 D ++ ++ + F+ + + +VSA G G D V Sbjct: 435 DVMQSPAAAKKQLVQYMDRFVPQAGHVPSIVVSALYGRGTDAVF 478 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 31/55 (56%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 VALVG TN GKSTL NR VG + ++V+ + TTR G + +DT G Sbjct: 91 VALVGRTNVGKSTLFNRLVGRRDALVSKEAGTTRDRREGKGHISGLEFTLIDTGG 145 >gi|168187418|ref|ZP_02622053.1| GTP-binding protein [Clostridium botulinum C str. Eklund] gi|169294718|gb|EDS76851.1| GTP-binding protein [Clostridium botulinum C str. Eklund] Length = 598 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 36/215 (16%) Query: 25 VALVGATNAGKSTLVNRF--VGAKVSIVTHKV--------QTTRSIVRGIVSEKESQIVF 74 ++LVG TNAGKSTL N+ + + +V + T R +V + Sbjct: 366 ISLVGYTNAGKSTLRNKLCDIASPRDVVDKETVFEADMLFATLDVTTRALVLPDNRLVTL 425 Query: 75 LDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIA 127 DT G + H L+ + + + ++D++ VVDS +++++ ++ +L+E+ Sbjct: 426 TDTVGFI--RKLPHDLVEAFKSTLEEVVNSDLLLHVVDSSSKDAYKQIEA-VNLVLEELE 482 Query: 128 KRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +ILILNKID E+L E N L +E +SA D +LN +C LP Sbjct: 483 SIDKPMILILNKIDKADKEQLEGLEEKFNNLKVLE----ISARDNLNLDTLLNEVCRALP 538 Query: 188 --------LAPWVYSADQISDLPMFHFTAEITREK 214 L P+ SA + M H + ++ E+ Sbjct: 539 NPLKKVEFLIPYSDSA----TVAMLHRSGKVLEEE 569 >gi|157104146|ref|XP_001648272.1| GTP binding protein (mitochondrial), putative [Aedes aegypti] gi|108880387|gb|EAT44612.1| GTP binding protein (mitochondrial), putative [Aedes aegypti] Length = 493 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 24/183 (13%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG ++GA N GKS+ VN KVSIVT+ TTR I+ ++ DT G Sbjct: 235 RSGVRTVIIGAPNVGKSSFVNLLSNRKVSIVTNVAGTTRDIIESHHDIGGYPVILADTAG 294 Query: 80 IF-NAKDSYHKLMIRLSWSTIKHADIVCLVVDSH------RELKVNIHDLL--------- 123 + D I + + AD + L+VD+ + K D L Sbjct: 295 LRKETSDIIEHEGITRAKDYLTEADFIVLIVDAGNLQSYLKSSKKQFDDYLDHYVTSLGF 354 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 KE R S ++I+NK+D L E N + + M+S G G +VL + Sbjct: 355 KENIIRDSNCMIIINKVD-------LLSEEFRNAIDRTKNLSMLSCQTGEGLQNVLEKIT 407 Query: 184 STL 186 L Sbjct: 408 ENL 410 >gi|291547599|emb|CBL20707.1| tRNA modification GTPase trmE [Ruminococcus sp. SR1/5] Length = 458 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKS+L+N +G +IVT TTR ++ ++ + DT GI +D Sbjct: 226 ILGKPNAGKSSLLNLLLGEDRAIVTDIAGTTRDVLEEYINLHGITLKIADTAGIRQTEDI 285 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 K+ + + AD++ VVDS L N +++K + ++ + I++ +K D Sbjct: 286 VEKIGVSKAKEMAADADLILYVVDSSVPLDENDEEIIKILQEK--KTIVLYSKTDL 339 >gi|262118591|pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In Complex With Gdp And Folinic Acid gi|262118593|pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In Complex With Gcp gi|262118594|pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In Complex With Gcp gi|262118595|pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In Complex With Gcp Length = 476 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 11/161 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKSTL+N +G + +IV+H TTR + ++ DT G+ A + Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEE 297 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSSRLILILNKID 141 IR S + AD++ ++D E + D L EI A +++ + + NK+D Sbjct: 298 IEHEGIRRSRMKMAEADLILYLLDLGTE---RLDDELTEIRELKAAHPAAKFLTVANKLD 354 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L +A IA+ + +SA G G D + ++ Sbjct: 355 RAANADALIRA-IADGTG--TEVIGISALNGDGIDTLKQHM 392 >gi|260460374|ref|ZP_05808626.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075] gi|259034019|gb|EEW35278.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075] Length = 476 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 VA++G N GKSTL NR VG K+++V TR R + + K + F +DT G + Sbjct: 5 VAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRD--RRVHAAKLYDLHFDVIDTAGFED 62 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A S +R I AD++ +D+ L + + + K ++L+ NK + Sbjct: 63 AAASTLPGRMRAQTEIAIHEADLIFFTIDAKSGLLPDDRTFAEIVRKSGKPVVLVANKAE 122 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + +LE E+ + + VSA G G D+ + + + L Sbjct: 123 AKGAQGGMLEAWELG-----LGEPIPVSAEHGQGMPDLRDAVIAAL 163 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 28/186 (15%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D+++ +A+VG NAGKSTL+N +G + + + TR + + +I DT Sbjct: 200 DDTKPMRIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWRGRRIKLFDT 259 Query: 78 PGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ + KL ++ I+ A+IV +V+D+ + + I DL I + Sbjct: 260 AGMRRKARIHEKLEVMSVQDGLRAIRFAEIVIIVLDATIPFEKQDLQIADL---IIREGR 316 Query: 132 RLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 ++ NK D + K ERLL QA + VSA G G D ++ Sbjct: 317 APVIAFNKWDLIDHPQELLAELREKTERLLPQARGI-------QAVPVSAETGRGLDKLM 369 Query: 180 NYLCST 185 + + T Sbjct: 370 DAVLKT 375 >gi|255065190|ref|ZP_05317045.1| ribosome-associated GTPase EngA [Neisseria sicca ATCC 29256] gi|255050611|gb|EET46075.1| ribosome-associated GTPase EngA [Neisseria sicca ATCC 29256] Length = 535 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 A++G N GKSTLVN +G + I TTR + I E+E + +DT G+ Sbjct: 229 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDTAGVRRRG 287 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++ LV+D+ +++ + + L++ +NK D Sbjct: 288 KVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWD 347 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + ER + + +I+ KL F++ K +SA K G D + + + + Sbjct: 348 GISEERREQIKRDISRKLYFLDFAKFHFISALKERGIDGLFDSIQAA 394 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 54 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPV 113 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + ++ + AD V +VD L Sbjct: 114 VDSGILHE-MAKQTFQAVDEADAVVFLVDGRTGL 146 >gi|302875577|ref|YP_003844210.1| GTP-binding protein Obg/CgtA [Clostridium cellulovorans 743B] gi|307690106|ref|ZP_07632552.1| GTPase ObgE [Clostridium cellulovorans 743B] gi|302578434|gb|ADL52446.1| GTP-binding protein Obg/CgtA [Clostridium cellulovorans 743B] Length = 429 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 26/212 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGIFNA 83 V L+G N GKSTL++R AK I + T + + G+VS Q V D PGI Sbjct: 161 VGLLGFPNVGKSTLLSRVTKAKPKIANYHFTTIKPNL-GVVSVNGIQPFVMADIPGIIEG 219 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK---EIAKRSSRL-----I 134 L ++ I+ ++ VVD S E + I D K E+ K S +L I Sbjct: 220 ASEGVGLGLQF-LRHIERTRLLIHVVDISGIEGRDPIEDFKKINEELKKYSVKLWDRPQI 278 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYS 194 + NK D + E + E A K + +K F +SA G G D ++ L P Sbjct: 279 VAANKSDMLYEEEKYLEFEKAVKEMGYDKVFKISAGTGMGIDPLMKEAARILSTIP---- 334 Query: 195 ADQISDLPMFHFTAEITREKLFLHLHKEIPYS 226 ++DL EI+ E +++ K+ Y+ Sbjct: 335 ---VTDL-------EISEEDMYVPEEKKFTYT 356 >gi|218508068|ref|ZP_03505946.1| GTP-binding protein EngA [Rhizobium etli Brasil 5] Length = 322 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 22/198 (11%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 + E E ++ + D+++ VA+VG NAGKSTL+NRF+G + + TR + Sbjct: 32 LSETEADGEDEEPIYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSIS 91 Query: 63 GIVSEKESQIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 + I DT G+ + KL + + I+ A+ V +V D+ + Sbjct: 92 VEWDWRGRTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQD 151 Query: 120 HDLLKEIAKRSSRLILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMV 167 ++ + + +L NK D + K +RLL QA + + Sbjct: 152 LQIVDLVLREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGI-------RAVPI 204 Query: 168 SATKGHGCDDVLNYLCST 185 S G G D ++ + T Sbjct: 205 SCQTGWGLDKLMQSIIDT 222 >gi|218438310|ref|YP_002376639.1| small GTP-binding protein [Cyanothece sp. PCC 7424] gi|218171038|gb|ACK69771.1| small GTP-binding protein [Cyanothece sp. PCC 7424] Length = 529 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 18/141 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIV------THKVQTTRSIVRGIVSEKESQIVFLDTP 78 V + G +AGK++LVN +G V V T QT R ++GI E I+ DTP Sbjct: 135 VVVFGTGSAGKTSLVNALIGEMVGNVEATMGTTQIGQTYRLKLKGITRE----ILITDTP 190 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH-RELKVNIHDLLKEIAKRSSRLILIL 137 GI A + + +L+ AD++ V+D+ R+ + + +L EI KRS +LI Sbjct: 191 GILEAGIAGTERE-KLARQLATEADLLLFVIDNDLRQSEYDPLRMLVEIGKRS---LLIF 246 Query: 138 NKIDCVKPERLLEQAEIANKL 158 NK D E +Q I N+L Sbjct: 247 NKTDLYTDE---DQEVILNQL 264 >gi|33594714|ref|NP_882358.1| tRNA modification GTPase TrmE [Bordetella pertussis Tohama I] gi|46577402|sp|Q7VSR5|MNME_BORPE RecName: Full=tRNA modification GTPase mnmE gi|33564790|emb|CAE44118.1| putative tRNA modification GTPase [Bordetella pertussis Tohama I] gi|332384125|gb|AEE68972.1| tRNA modification GTPase TrmE [Bordetella pertussis CS] Length = 450 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 15/172 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+N G ++IVT TTR V + + +DT G+ + Sbjct: 222 VVLAGKPNVGKSSLLNALAGDDIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTD 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 D+ + I +W I+ AD++ + D + +++ + R+ ++ + NK+D Sbjct: 282 DAVESIGIERTWKEIERADLILHLQDVTQPPDHLDAQIVRRLPARTP-VLNVFNKVD--- 337 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LL+ A + +SA G G D + +L L LA W A+ Sbjct: 338 ---LLDAAFQGQP-----DSLAISARGGIGLDALRQHL---LQLAGWNPGAE 378 >gi|21674894|ref|NP_662959.1| tRNA modification GTPase TrmE [Chlorobium tepidum TLS] gi|25453304|sp|Q8KAS1|MNME_CHLTE RecName: Full=tRNA modification GTPase mnmE gi|21648119|gb|AAM73301.1| thiophene and furan oxidation protein ThdF [Chlorobium tepidum TLS] Length = 473 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 11/161 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKSTL+N +G + +IV+H TTR + ++ DT G+ A + Sbjct: 235 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEE 294 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-----AKRSSRLILILNKID 141 IR S + AD++ ++D E + D L EI A +++ + + NK+D Sbjct: 295 IEHEGIRRSRMKMAEADLILYLLDLGTE---RLDDELTEIRELKAAHPAAKFLTVANKLD 351 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L +A IA+ + +SA G G D + ++ Sbjct: 352 RAANADALIRA-IADGTG--TEVIGISALNGDGIDTLKQHM 389 >gi|325846391|ref|ZP_08169360.1| tRNA modification GTPase TrmE [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481575|gb|EGC84615.1| tRNA modification GTPase TrmE [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 454 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 8/120 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++G N GKS+L+N + +IVT TTR + ++ + DT GI Sbjct: 223 TTIIGKPNVGKSSLLNVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETH 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN---IHDLLKEIAKRSSRLILILNKID 141 D K+ ++ S K AD++ + D RE+ I DLLK I+ILNKID Sbjct: 283 DEVEKIGVQRSKELAKGADLIIAIFDRSREIDEEDKIILDLLK-----GKNAIIILNKID 337 >gi|254496731|ref|ZP_05109592.1| GTP binding protein HflX [Legionella drancourtii LLAP12] gi|254354047|gb|EET12721.1| GTP binding protein HflX [Legionella drancourtii LLAP12] Length = 418 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 8/124 (6%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N G ++ + T +R + S ++ DT G Sbjct: 199 TVSLVGYTNAGKSTLFNALTGERIYVANQLFATLDPTMRQLSLPGASGVILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILIL 137 +D H L+ R + + AD++ V+D R+ ++ +L E+ +I + Sbjct: 257 RDLPHHLVEAFRATLEETQQADLLLHVIDISDPHWRDTVFSVQQVLDELGVNDIPVIQVF 316 Query: 138 NKID 141 NKID Sbjct: 317 NKID 320 >gi|237807666|ref|YP_002892106.1| small GTP-binding protein [Tolumonas auensis DSM 9187] gi|259645887|sp|C4LC41|DER_TOLAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|237499927|gb|ACQ92520.1| small GTP-binding protein [Tolumonas auensis DSM 9187] Length = 498 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 9/168 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKSTL NR ++ ++V TR G + + +DT GI + Sbjct: 4 VVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAVVDDMNFIVVDTGGIDGS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ M S I +D+V +VD+ + + + ++ ++ L+ NK D + Sbjct: 64 EEGIEVKMAEQSLQAIDESDVVLFMVDARAGVTSADIGIANHLRRQKKKVFLVANKTDGL 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 + + A+ + + + + + ++A+ G G +L LAP+ Sbjct: 124 DGD--VHCADFYS--LALGEVYQIAASHGRGVTSLLEK-----ALAPF 162 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 6/161 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKSTL NR +G IV TTR + + + + +DT G+ K Sbjct: 215 AIIGRPNVGKSTLTNRMLGEDRVIVYDLPGTTRDSIYIPLERDDQHYIVIDTAGVRKKKK 274 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I+ A++V L++D+ + LL +++ +NK D Sbjct: 275 IYETVEKFSVVKTLQAIEDANVVLLLIDAREGVSDQDLSLLGFTLHSGRSIVIAVNKWDG 334 Query: 143 VK---PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 + E++ E E V + +SA G G ++ + Sbjct: 335 LDQDTKEKIKEDLERRLGFVDFARVHFISALHGSGVGNLFD 375 >gi|194246565|ref|YP_002004204.1| tRNA modification GTPase TrmE [Candidatus Phytoplasma mali] gi|193806922|emb|CAP18351.1| tRNA modification GTPase [Candidatus Phytoplasma mali] Length = 452 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 5/135 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G N GKS+L+N F+ + SIV+ TTR V + + + +DT G+ A+D Sbjct: 224 IIGRPNVGKSSLLNFFLEEERSIVSDIPGTTRDFVDVYFNLQGITLHLIDTAGVREAEDK 283 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 K+ + + +K A++V LV+D + L+ +LL + K R ILI NK D + Sbjct: 284 IEKIGVLKTKQLLKKAELVLLVLDQNNCLQSEDKELLN-LTKDYPR-ILIGNKSDL---K 338 Query: 147 RLLEQAEIANKLVFI 161 +E+ ++ +++FI Sbjct: 339 TKIEKQQLTEEIIFI 353 >gi|119952977|ref|YP_945186.1| tRNA modification GTPase TrmE [Borrelia turicatae 91E135] gi|254811472|sp|A1QYX4|MNME_BORT9 RecName: Full=tRNA modification GTPase mnmE gi|119861748|gb|AAX17516.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Borrelia turicatae 91E135] Length = 464 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 10/128 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 + L G+ N GKS+L N + +IV+ TTR ++ S + I+F DT G+ Sbjct: 224 ALVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQA--SFEFDGILFNVFDTAGLR 281 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI--AKRSSRLILILNK 139 D +L I S S IK A +V V+D L +D LK I K S++I +LNK Sbjct: 282 ETTDFVEQLGIVKSNSLIKEASLVLYVIDLSARLT---NDDLKFIDSYKGHSKVIFVLNK 338 Query: 140 IDCVKPER 147 +D ++P R Sbjct: 339 MD-LEPNR 345 >gi|148259762|ref|YP_001233889.1| GTP-binding protein EngA [Acidiphilium cryptum JF-5] gi|146401443|gb|ABQ29970.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5] Length = 451 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 5/169 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 +R+ VA+ G N GKSTL NR G ++++V + TR ++ +DT G Sbjct: 6 ARTPRVAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAG 65 Query: 80 IFNA-KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + A D+ M + + + AD+V V D+ L + + +I++ N Sbjct: 66 LEEAPPDTLPGRMRASTGTAVDEADLVLFVFDARAGLLPEDRHFAAWLRRAGKPVIVVAN 125 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K + R A + + + + VSA G D+++ + LP Sbjct: 126 KAEG----RGGSNAALEAYELGLGEPVAVSAEHNEGVSDLIDRIIEALP 170 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL- 75 +D R +A+VG NAGKSTL+NR +G + I + TR + +++ + L Sbjct: 178 EDGERPMHLAIVGRPNAGKSTLMNRLLGEQRVITGPEPGLTRDAIAAELTDSAGRRYRLF 237 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ + KL + +K AD V L +D+H L + + I + Sbjct: 238 DTAGLRRRARVEAGLEKLSTSSTIEALKFADTVVLAIDAHEGLHDQDFTIARLIEREGRA 297 Query: 133 LILILNKIDCVK 144 ++ L K D V+ Sbjct: 298 CVIALTKWDLVE 309 >gi|329664338|ref|NP_001193147.1| tRNA modification GTPase GTPBP3, mitochondrial [Bos taurus] gi|297476305|ref|XP_002688588.1| PREDICTED: GTP binding protein 3 (mitochondrial) [Bos taurus] gi|296486093|gb|DAA28206.1| GTP binding protein 3 (mitochondrial) [Bos taurus] Length = 521 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 17/172 (9%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V + G NAGKS+LVN VSIV+ + TTR ++ V + DT G Sbjct: 277 RSGAHVVVAGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPALLSDTAG 336 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLL------KEIAKRS 130 + + +R + ++ AD++ V+D+ N D + + Sbjct: 337 LREGVGPVEQEGVRRAQKRLEQADLILAVLDASDLASPASCNFLDTVVIPAGARNPNGSR 396 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 RL+L+LNK D + R ++ + L ++S G G D +L L Sbjct: 397 QRLLLVLNKSDLLPAGRSDLHPDLPSHL-------LLSCLTGEGLDGLLEAL 441 >gi|16125900|ref|NP_420464.1| GTP-binding protein EngA [Caulobacter crescentus CB15] gi|221234663|ref|YP_002517099.1| GTP-binding protein EngA [Caulobacter crescentus NA1000] gi|13423060|gb|AAK23632.1| GTP-binding protein [Caulobacter crescentus CB15] gi|220963835|gb|ACL95191.1| GTP-binding protein [Caulobacter crescentus NA1000] Length = 588 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL NR G K++IV + TR S + ++ +DT G + Sbjct: 5 LAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGSLGDLELELIDTAGFEDVD 64 Query: 85 DSYHKLMIRL-SWSTIKHADIVCLVVDSHRELKVNIHDLLKEI-AKRSSRLILILNKIDC 142 DS + +R + + I+ AD+ V DS RE + ++ I KR +I+ NK + Sbjct: 65 DSSLEARMRAQTEAAIEEADVSLFVFDS-REGVTALDEVFAAILRKRDKPVIVAANKAEG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISD 200 E A A +L E +S G G ++ L L P V + D D Sbjct: 124 KAGE---AGAGEAFRLGLGE-PIPISGEHGEGMAELYAAL---LAFEPQVEAGDDEDD 174 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 7/139 (5%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E D D+S+ +A++G NAGKSTLVNR +G + + TR + Sbjct: 167 EAGDDEDDDSKPIRIAIIGRPNAGKSTLVNRLLGEDRLLTGPEAGITRDSISVDWEWDGR 226 Query: 71 QIVFLDTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEI 126 +I +DT G+ +D KL + I A++V LV+D+ + I DL + ++ Sbjct: 227 KIRLVDTAGLRRKAKVQDKLEKLSTADTIRAITFAEVVLLVMDATHPFE--IQDLQIADL 284 Query: 127 AKRSSR-LILILNKIDCVK 144 A+R R ++ +L K D ++ Sbjct: 285 AEREGRAVVFVLAKWDLIE 303 >gi|89099128|ref|ZP_01172007.1| GTP-binding protein EngA [Bacillus sp. NRRL B-14911] gi|89086258|gb|EAR65380.1| GTP-binding protein EngA [Bacillus sp. NRRL B-14911] Length = 436 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 +L+G N GKS+LVN +G + IV++ TTR V +++ Q V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNAILGEERVIVSNIAGTTRDAVDSLLTYNGDQYVIIDTAGMRKKGK 238 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + I+ +D+V +V+D+ + + + +++++NK D Sbjct: 239 VYESTEKYSVLRALRAIERSDVVLVVIDADEGILEQDKKIAGYAHEAGRAVVIVVNKWDA 298 Query: 143 V-KPERLLEQAE 153 V K E+ ++ E Sbjct: 299 VEKDEKTMKAFE 310 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKST+ NR VG ++SIV TR + +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSSAEWLNLDFNIIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + I+ AD++ + + + + K + K ++L +NKID Sbjct: 65 DEPFLEQIRQQAEIAIEEADVILFLTNGREGVTSADEAVAKILYKSKKPVVLGVNKID-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P+ + +Q L F E +S + G G D+L+ P Sbjct: 123 NPD-MRDQIYDFYALGFGE-PIPISGSHGLGLGDLLDEAAKHFP 164 >gi|319941505|ref|ZP_08015832.1| small GTP-binding protein domain [Sutterella wadsworthensis 3_1_45B] gi|319804979|gb|EFW01818.1| small GTP-binding protein domain [Sutterella wadsworthensis 3_1_45B] Length = 360 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 13/161 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+L G TNAGKSTL N+ A+ T + R E +V DT G Sbjct: 156 TVSLAGYTNAGKSTLFNKITRAETYAADQLFATLDTTARKFWLSDEETVVATDTVGFI-- 213 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH---RELKV-NIHDLLKEIAKRSSRLILIL 137 + H+L+ + + HAD++ VVD+ RE ++ ++ +L +I +IL+ Sbjct: 214 RGLPHQLIEAFKSTLDETVHADLILHVVDASSPVREEQIAEVNSVLADIHADDVPVILVY 273 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 NKID + EI K VSA G G D++ Sbjct: 274 NKIDVTG-----QAPEIVRDQNGRPKAVFVSALTGAGLDEL 309 >gi|325109259|ref|YP_004270327.1| small GTP-binding protein [Planctomyces brasiliensis DSM 5305] gi|324969527|gb|ADY60305.1| small GTP-binding protein [Planctomyces brasiliensis DSM 5305] Length = 370 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF 74 F Q ++ V + GA NAGKS+L+N +G + +IV + TTR V+ + ++ Sbjct: 179 FGQHLTQPWQVVIGGAPNAGKSSLINALLGYERAIVYDQPGTTRDAVKAETAIDGWPVML 238 Query: 75 LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 DT G + ++ I ++ + ++ AD+ +++D +I LL+ + Sbjct: 239 SDTAGQRASSETIEAAGIEIARTLLRSADLAVILIDRSAPSDSDIETLLQAFPN----AL 294 Query: 135 LILNKID 141 ++ NK D Sbjct: 295 VVFNKCD 301 >gi|238918411|ref|YP_002931925.1| GTPase ObgE [Edwardsiella ictaluri 93-146] gi|238867979|gb|ACR67690.1| GTP-binding protein Obg/CgtA , putative [Edwardsiella ictaluri 93-146] Length = 392 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 21/175 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G NAGKST + AK + + T + + + E V D PG+ Sbjct: 162 VGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDSEKSFVVADIPGLIEGA 221 Query: 85 DSYHKLMIRLSWSTIKHAD-------IVCLVVDSHRELKVNIHDLLKEIAKRSSRLI--- 134 L IR ++H + ++ L + N ++ E+ K S +L Sbjct: 222 SEGAGLGIRF----LRHLERCRVLLHLIDLAPIDESDPVENARVIIGELEKYSEKLFQKP 277 Query: 135 --LILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHG----CDDVLNYL 182 L+ NK D + PE +A+ IA+ L + + +++SA G C DV+N+L Sbjct: 278 RWLVFNKADLLAPEEAKARAQAIADALGWEGEHYLISAANREGVNALCWDVMNFL 332 >gi|119961109|ref|YP_947366.1| GTP-binding protein [Arthrobacter aurescens TC1] gi|119947968|gb|ABM06879.1| putative GTP-binding protein [Arthrobacter aurescens TC1] Length = 629 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 19/193 (9%) Query: 5 EITFFNEHKDFVQDNSRSGCV---ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 EI ++ + N R V A+ G TNAGKS+L+NR A V + T V Sbjct: 387 EIAAMKPARETKRANRRRNAVPSVAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTV 446 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI- 119 R + DT G + + R + + AD++ VVD SH + + I Sbjct: 447 RKAQTPDGIGYTLADTVGFVRSLPTQLIEAFRSTLEEVADADLILHVVDASHPDPEGQIA 506 Query: 120 --HDLLKEIAKRSSRLILILNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHG 174 + E+ R I++LNK+D P ERL ++ + +VS G G Sbjct: 507 AVRAVFTEVDARKVPEIIVLNKVDVADPFVVERLKQKE---------PRHAVVSTRTGQG 557 Query: 175 CDDVLNYLCSTLP 187 ++L + ++P Sbjct: 558 IAELLEDISRSIP 570 >gi|296122493|ref|YP_003630271.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] gi|296014833|gb|ADG68072.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] Length = 496 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP--GIFN 82 VA+VG N GKS+++N ++S+V TR V ++ E + +DT GI + Sbjct: 6 VAIVGRPNVGKSSILNWLAQKRISVVDPTAGVTRDRVMYLMHEGDRYFELVDTGGIGIVD 65 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D +++ +++ I+ AD++ VVD L ++ + + S+R ++++NK D Sbjct: 66 VDDLSNEIDYQINVG-IQEADLILFVVDGSAGLTALDLEVSRRLRPISTRKLVVVNKCDS 124 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGH-GCDDVLNYLCSTLPLAPWVYSADQISD 200 K + E+ + +V++ KG+ +D++ + LP A +AD+ D Sbjct: 125 PKLD-----LELGPFYALADGPIVVTSVKGNRNRNDLMAAILENLPDA----NADEQQD 174 Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 12/140 (8%) Query: 10 NEHKDFVQDNSRSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 +E +D QD + +A+VG N GKST VN + IV+ TTR V Sbjct: 170 DEQQDGEQDTAEPELKLAIVGRRNVGKSTFVNSLAETERMIVSEIPGTTRDSVDVRFELD 229 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSW-------STIKHADIVCLVVDSHRELKVNIHD 121 V +DTPG+ K L + W +I+ A++V + D + + Sbjct: 230 GKSFVAIDTPGVRKRK----SLANDIEWYGLARAKRSIRRANVVLMFFDCTQPISRVDKQ 285 Query: 122 LLKEIAKRSSRLILILNKID 141 L+ EI + I ++NK D Sbjct: 286 LVHEIYEYHKPCIFVVNKWD 305 >gi|139439631|ref|ZP_01773044.1| Hypothetical protein COLAER_02071 [Collinsella aerofaciens ATCC 25986] gi|133774972|gb|EBA38792.1| Hypothetical protein COLAER_02071 [Collinsella aerofaciens ATCC 25986] Length = 429 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 80/198 (40%), Gaps = 22/198 (11%) Query: 11 EHKDFVQDNSR----SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS 66 E + VQ SR + VAL G TNAGKSTL+NR G+ V T R Sbjct: 194 EQRRDVQSKSRIESPAFRVALAGYTNAGKSTLLNRLTGSTVLSQDKLFATLDPTTRSYRL 253 Query: 67 EKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHD 121 + DT G + + S + AD++ VVD+ R+L+ + Sbjct: 254 PGGRGMTITDTVGFIQKLPHGLVDAFKSTLSEVLGADLILKVVDASDEDYERQLEA-VDR 312 Query: 122 LLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK---TFMVSATKGHGCDDV 178 +L EI + + NKID + + ++L F + + SA G G DD+ Sbjct: 313 VLDEIGAGERLTLTVFNKIDLL---------DSVDRLSFRRRYPEAVLFSAQTGEGLDDL 363 Query: 179 LNYLCSTLPLAPWVYSAD 196 ++ + + SAD Sbjct: 364 VDRIAREAAATDVLLSAD 381 >gi|90418692|ref|ZP_01226603.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90336772|gb|EAS50477.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 469 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 22/185 (11%) Query: 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL 75 V D ++ +A+VG NAGKSTL+NRF+G + + TR + + I Sbjct: 191 VYDATKPLRIAIVGRPNAGKSTLINRFLGEDRMLTGPEAGITRDSIASEWEWRGRTIKVF 250 Query: 76 DTPGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 DT G+ ++ KL + IK A++V +V D+ + ++ + + Sbjct: 251 DTAGMRRKAKVQEKLEKLSVADGLRAIKFAEVVVVVFDATIPFERQDMSIVDLVMREGRA 310 Query: 133 LILILNKIDCV------------KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 ++ NK D + K +RLL QA + VS G G + ++ Sbjct: 311 PVIAFNKWDLIEDRQEVLADLREKTDRLLPQARGI-------RAITVSGETGEGVERLMK 363 Query: 181 YLCST 185 + T Sbjct: 364 AIVDT 368 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 7/165 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL NR VG ++++V + TR G + + +DT G+ A Sbjct: 3 TIAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRTGDATLLDLDFEVVDTAGLEEA 62 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ M + + I AD+ ++D + ++ + + + ++IL+ NK + Sbjct: 63 GADTLEGRMRTQTETAIASADLCLFMIDVKAGVMPQDRAFVEIMRRTAGKVILVANKSEA 122 Query: 143 VKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E +L+ E+ + + +SA G G ++ + + L Sbjct: 123 RGAEAGMLDAFELG-----LGEPIGISAEHGVGMGELRDAILEAL 162 >gi|256851011|ref|ZP_05556400.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 27-2-CHN] gi|260661223|ref|ZP_05862137.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 115-3-CHN] gi|282932036|ref|ZP_06337494.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1] gi|256616073|gb|EEU21261.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 27-2-CHN] gi|260548160|gb|EEX24136.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 115-3-CHN] gi|281303803|gb|EFA95947.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1] Length = 436 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 4/125 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV-RGIVSEKESQIVFLDTPGIFN 82 +++G N GKS+++N +G K IV ++ TTR V V+E ++ +DT GI Sbjct: 176 AFSVIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRR 235 Query: 83 AKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 Y K + + + I+ +D+VCLV+D+ ++ + +I+++NK Sbjct: 236 RGKVYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMIIVVNK 295 Query: 140 IDCVK 144 D K Sbjct: 296 WDLPK 300 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 14/181 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR + +++IV + TR S + +DT GI Sbjct: 5 TVAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWE 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + ++ AD++ ++ + +++ DL + IA+ RSS+ +IL +NK Sbjct: 65 GGRIEDEIRAQADIAMEEADVIVMIT----SVALHLTDLDERIARILYRSSKPVILAVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D PE ++A+I + + +S+T G G D+L+ + P D+I Sbjct: 121 AD--NPE---QRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAVVENFPPEADTKDEDEI 175 Query: 199 S 199 + Sbjct: 176 A 176 >gi|118444767|ref|YP_878586.1| GTPase ObgE [Clostridium novyi NT] gi|261266742|sp|A0Q1T4|OBG_CLONN RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|118135223|gb|ABK62267.1| GTP-binding protein, GTP1/OBG family [Clostridium novyi NT] Length = 424 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 20/180 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G N GKSTL++ AK I + T + + + E + V D PGI Sbjct: 161 VGLIGFPNVGKSTLLSMVSKAKPKIANYHFTTLKPNLGVVKIEGANAFVMADIPGIIEGA 220 Query: 85 DSYHKLMIRLSWSTIKHAD---IVCLVVD-SHRELKVNIHDLLK---EIAKRSSRL---- 133 + L ++H + ++ VVD S E + I D K E+ S +L Sbjct: 221 SE----GVGLGLDFLRHIERTRLLVHVVDISGVEGRNPIEDFKKINEELKNYSVKLWDRP 276 Query: 134 -ILILNKIDCVKPERLLE--QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 I++ NKID + E + E + E+ NKL F +K F +SA G DD++ + L + P Sbjct: 277 QIVVANKIDMLYDEEVFETFKKEV-NKLGF-DKVFKISAATRDGVDDLIKEVTRQLSMIP 334 >gi|332527859|ref|ZP_08403896.1| GTP-binding proten HflX [Rubrivivax benzoatilyticus JA2] gi|332112436|gb|EGJ12229.1| GTP-binding proten HflX [Rubrivivax benzoatilyticus JA2] Length = 371 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 15/170 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N V AK T + R + + E + DT G Sbjct: 191 VSLVGYTNAGKSTLFNALVKAKTYAADQLFATLDTTTRSLWLGEAGMSVSLSDTVGFI-- 248 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHR----ELKVNIHDLLKEIAKRSSRLILIL 137 +D HKL+ + AD++ VVD+ E + + +L+EI IL+ Sbjct: 249 RDLPHKLVEAFEATLREAADADLLLHVVDAASPALLEQQAEVERVLEEIGASGVPQILVF 308 Query: 138 NKIDCVKPERL----LEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 NK D ++ RL ++ E+ + V + F VSA G G D + + Sbjct: 309 NKCDLLEDSRLPRCPRDEVEV-HPGVRRARVF-VSARDGQGLDSLRQLIA 356 >gi|324515570|gb|ADY46246.1| GTP-binding protein [Ascaris suum] Length = 396 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 9/136 (6%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q + R VA++G N+GKS L N+ V A+VS V+ K+ TT+ V ++E Q+V +D Sbjct: 29 QTSERCLQVAVIGPPNSGKSLLTNQIVRAQVSAVSSKMDTTQRNVTAALTEHGCQLVVVD 88 Query: 77 TPGIFNAKDSY------HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +PG + + +++ ++ A V +V DS IH + + R Sbjct: 89 SPGTIGIQHARKVVKRNEPMLLTGPERALEGASHVLVVHDSTATGDY-IHHRVLHLLHRY 147 Query: 131 SRLI--LILNKIDCVK 144 L L+LNKID V+ Sbjct: 148 PHLTSSLVLNKIDLVQ 163 >gi|315425254|dbj|BAJ46922.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum] gi|315427488|dbj|BAJ49092.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum] Length = 412 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 21/179 (11%) Query: 12 HKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 K+ V+ G VAL G TNAGK+TL NRF G + ++ TT S IV + Sbjct: 172 RKNLVRQRRLEGGLPTVALTGYTNAGKTTLFNRFSGEE-HPAGPQLFTTLSTTARIVKFR 230 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK---HADIVCLVVD-----SHRELKVNI- 119 + DT G K+ H L++ ST+ +AD++ LVVD S E K+N Sbjct: 231 GRKAYLSDTVGFI--KNLPH-LLVESFHSTLSEFIYADLLLLVVDISEEKSVVESKLNTC 287 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 ++L E+ ++ ++++ NKID R E+ E N + VSA G G D + Sbjct: 288 LNVLDEVGVKNVPILVVFNKIDAAADYR--EKIESINPEF---RYVAVSAWTGQGLDTL 341 >gi|309805733|ref|ZP_07699773.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners LactinV 09V1-c] gi|309806753|ref|ZP_07700747.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners LactinV 03V1-b] gi|309807512|ref|ZP_07701469.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners LactinV 01V1-a] gi|312873986|ref|ZP_07734022.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners LEAF 2052A-d] gi|312875498|ref|ZP_07735501.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners LEAF 2053A-b] gi|325912835|ref|ZP_08175213.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners UPII 60-B] gi|308164986|gb|EFO67229.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners LactinV 09V1-c] gi|308166868|gb|EFO69053.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners LactinV 03V1-b] gi|308169239|gb|EFO71300.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners LactinV 01V1-a] gi|311089009|gb|EFQ47450.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners LEAF 2053A-b] gi|311090535|gb|EFQ48943.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners LEAF 2052A-d] gi|325477828|gb|EGC80962.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners UPII 60-B] Length = 279 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G N GKST++NR VG +IV K TR + ++ I LDTPGI K Sbjct: 124 VAIAGIPNCGKSTIINRLVGRNATIVGDKPGVTRG---QNWLKTDTNIQILDTPGILWPK 180 Query: 85 DSYHKLMIRLSW-----STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + ++L+ ++ HAD V + V + L+ DLL + K S+ I +N Sbjct: 181 FDDRNIGLKLAACGAIKDSVFHADDVSIFV--LKYLREQYLDLLVDFCKTSAEKIEKIND 238 Query: 140 IDCV 143 ID + Sbjct: 239 IDLL 242 >gi|297517162|ref|ZP_06935548.1| GTP-binding protein EngA [Escherichia coli OP50] Length = 194 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 29 GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FNAKD 85 G N GKSTL NR +G + +V TTR + + + V +DT G+ D Sbjct: 1 GRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITD 60 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 + K + + I+ A++V LV+D+ + LL I L++++NK D + Sbjct: 61 AVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQ 120 Query: 146 ERLLEQAEIAN-KLVFIE--KTFMVSATKGHGCDDVL 179 E + E + +L FI+ + +SA G G ++ Sbjct: 121 EVKEQVRETLDFRLGFIDFARVHFISALHGSGVGNLF 157 >gi|220912237|ref|YP_002487546.1| GTP-binding proten HflX [Arthrobacter chlorophenolicus A6] gi|219859115|gb|ACL39457.1| GTP-binding proten HflX [Arthrobacter chlorophenolicus A6] Length = 553 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 16/171 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+ G TNAGKS+L+NR A V + T +R + DT G + Sbjct: 333 SVAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTIRKAETSDGLGYTLADTVGFVRS 392 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLK---EIAKRSSRLILILNK 139 + R + + +D++ VVD SH + + I + K E+ R I++LNK Sbjct: 393 LPTQLVEAFRSTLEEVADSDLILHVVDASHPDPEGQIAAVRKVFGEVDARKIPEIIVLNK 452 Query: 140 IDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D P ERL ++ + +VSA G G ++L + ++P Sbjct: 453 ADAADPFVVERLKQRE---------PRHVVVSARTGEGIAELLKTISDSIP 494 >gi|300814730|ref|ZP_07094978.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511117|gb|EFK38369.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 459 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 21 RSGCVALV-GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G L+ G N GKS+L+N + + +IVT TTR + ++ + DT G Sbjct: 219 REGINTLILGKPNVGKSSLLNGMLKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ ++++ IK AD+V ++ D R + ++L I + + + I+NK Sbjct: 279 IRQTDDEVEKIGVKIARDKIKEADLVIVIFDLSRPFNKDDREILDLIQNKKA--LFIMNK 336 Query: 140 IDC 142 D Sbjct: 337 DDL 339 >gi|39936158|ref|NP_948434.1| GTP-binding protein EngA [Rhodopseudomonas palustris CGA009] gi|192291876|ref|YP_001992481.1| GTP-binding protein EngA [Rhodopseudomonas palustris TIE-1] gi|81698158|sp|Q6N586|DER_RHOPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229784137|sp|B3Q9V3|DER_RHOPT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|39650013|emb|CAE28536.1| GTP-binding protein [Rhodopseudomonas palustris CGA009] gi|192285625|gb|ACF02006.1| small GTP-binding protein [Rhodopseudomonas palustris TIE-1] Length = 459 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA+VG NAGKST +NR +G + + + + TTR + V K DT G+ Sbjct: 190 VAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTRDSIAVEVEWKGRDFRVFDTAGLRRRS 249 Query: 84 --KDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 ++ KL + + ++ A++V L++D+ E + I DL++ + L++ +N Sbjct: 250 RIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFEEQDLRIADLVE---REGRALVIAVN 306 Query: 139 KIDCVK 144 K D ++ Sbjct: 307 KWDLIE 312 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 7/165 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL NR VG K+++V TR G + +DT G+ Sbjct: 4 TLAIIGRPNVGKSTLFNRLVGQKLALVDDAPGVTRDRREGEGRLGDLNFTLIDTAGLDEG 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 K S M + + I+ AD + V D+ L N + A+R+++ ++L+ NK + Sbjct: 64 PKGSLTARMQEQTETAIELADALLFVFDARAGLTPNDR-AFADFARRANKPVVLVANKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E + + + + +SA G G ++ + L L Sbjct: 123 G----KSGEIGAMESYALGLGDPVQISAEHGEGMGELYDALRPLL 163 >gi|85707779|ref|ZP_01038845.1| predicted GTPase [Erythrobacter sp. NAP1] gi|85689313|gb|EAQ29316.1| predicted GTPase [Erythrobacter sp. NAP1] Length = 356 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 13/171 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG NAGKST +N AK V H TT G+V K + V D PG+ Sbjct: 162 VGLVGLPNAGKSTFINAVSNAKAK-VGHYAFTTLVPKLGVVRHKGREFVLADIPGLIEGA 220 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK-EIAKRSSRL-----ILILN 138 + R I+ ++ ++D + V ++K E+ + L ++ LN Sbjct: 221 ADGAGIGDRF-LGHIERCRVLVHLIDIAGDDPVEAMRIVKEELEAYGAGLEDKPQLVALN 279 Query: 139 KIDCVKPERLLEQAE--IANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 K+D E + AE IA +K F VS G G +++++ + S LP Sbjct: 280 KLDLADEELGVAFAEELIA---AGADKVFAVSGASGEGIEELMDAVLSYLP 327 >gi|94500521|ref|ZP_01307052.1| probable GTP-binding protein [Oceanobacter sp. RED65] gi|94427311|gb|EAT12290.1| probable GTP-binding protein [Oceanobacter sp. RED65] Length = 436 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 8/131 (6%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 S + V+LVG TNAGKSTL N AKV T +R I + ++V +DT Sbjct: 195 RSSTPSVSLVGYTNAGKSTLFNALTEAKVYAADQLFATLDPTLRRIPIQGLGEVVLVDTV 254 Query: 79 GIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSSR 132 G + HKL+ + + + AD++ V+DS R+L + + +L EI Sbjct: 255 GFI--RHLPHKLVEAFKATLQETQEADLLLHVIDSADEDRQLNMEQVEIVLDEIEALDRP 312 Query: 133 LILILNKIDCV 143 + + NKID + Sbjct: 313 TLQVFNKIDLL 323 >gi|222616255|gb|EEE52387.1| hypothetical protein OsJ_34479 [Oryza sativa Japonica Group] Length = 568 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 15/190 (7%) Query: 5 EITFFNEHKDFVQDNSRS---GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ +H+ ++ +S V+LVG TNAGKSTL+NR GA V T Sbjct: 323 ELESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTT 382 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--- 118 R ++ + ++ + DT G + R + I + ++ +VD L Sbjct: 383 RRVLMKNGTEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSVIVHLVDISHPLAQQQID 442 Query: 119 -IHDLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +LKE+ S +++ NKID R+ E+AE + +SA G G + Sbjct: 443 AVDKVLKELDIESIPKLVVWNKIDNTDDTLRVKEEAE-------KQGIICISAINGDGLE 495 Query: 177 DVLNYLCSTL 186 + N + + L Sbjct: 496 EFCNAIQAKL 505 >gi|114319735|ref|YP_741418.1| GTP-binding protein, HSR1-related [Alkalilimnicola ehrlichii MLHE-1] gi|114226129|gb|ABI55928.1| GTP-binding protein HflX [Alkalilimnicola ehrlichii MLHE-1] Length = 421 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 15/162 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N G+ + T + +R + ++ DT G + Sbjct: 187 VVSLVGYTNAGKSTLFNALTGSGLYADDRLFATLDTTLRRLELPDGQPVILADTVGFIS- 245 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRLILIL 137 D H L+ R + + +D++ VVD+ RE + +L +I ++ + Sbjct: 246 -DLPHGLVAAFRSTLEEVGESDLLLHVVDAADPDRREHARQVQQVLADIGASEVPVLTVY 304 Query: 138 NKID-CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 NK D C P +L A + V+ VSA G G D++ Sbjct: 305 NKADLCQHPVGILRDDREAPEAVW------VSAAAGRGLDEL 340 >gi|291543062|emb|CBL16172.1| GTP-binding protein HflX [Ruminococcus bromii L2-63] Length = 416 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 16/191 (8%) Query: 5 EITFFNEHKDFVQDNSRSGCV---ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E++ +H+ ++ + V A+VG TNAGKSTL+N A V T Sbjct: 179 ELSDLEKHRQMLRSRRKKDGVITCAIVGYTNAGKSTLMNCLTDAGVLAQDKLFATLDPTS 238 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIH 120 R + ++ +DT G+ + R + +DI+ V D S E + ++ Sbjct: 239 RALKLPSGVTVMMIDTVGLVRRLPHHLVEAFRSTLEEAAQSDIILNVCDASSDEARTHMQ 298 Query: 121 ---DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 DLL+ + + +I +LNK D LL++ +A + +SA G G D+ Sbjct: 299 VTTDLLESLGCGDTPIITVLNKCD------LLDETMLAQDF---KACVRISAKNGTGIDE 349 Query: 178 VLNYLCSTLPL 188 +LN + + LP+ Sbjct: 350 LLNAIENNLPV 360 >gi|254469962|ref|ZP_05083367.1| GTP-binding proten HflX [Pseudovibrio sp. JE062] gi|211961797|gb|EEA96992.1| GTP-binding proten HflX [Pseudovibrio sp. JE062] Length = 491 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 16/173 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A VG TNAGKSTL NR A+V T +R + +++ DT G + Sbjct: 239 VIAFVGYTNAGKSTLFNRMTNAEVFAKDLLFATLDPTLRRLKLPHGREVILSDTVGFISE 298 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELK---VNIHDLLKEIA---KRSSRLILI 136 R + + ADIV V D +H + K +++++ L+ + S R+I + Sbjct: 299 LPHNLVAAFRATLEEVIQADIVLHVRDIAHEDTKAQSLDVNETLEMLGLKVSESDRVIEV 358 Query: 137 LNKIDCVKP---ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + E+LLE + E VSA G G D+L + + L Sbjct: 359 YNKIDKLDEAHREKLLESNSVD------EGPISVSAISGDGIPDLLARIEARL 405 >gi|162448238|ref|YP_001621370.1| tRNA modification GTPase TrmE [Acholeplasma laidlawii PG-8A] gi|189036193|sp|A9NE34|MNME_ACHLI RecName: Full=tRNA modification GTPase mnmE gi|161986345|gb|ABX81994.1| tRNA modification GTPase [Acholeplasma laidlawii PG-8A] Length = 448 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N + + +IV+ TTR + V+ + +DT G Sbjct: 217 REGVKTVIVGRPNVGKSSLLNALLNEERAIVSDIAGTTRDTIDAFVNLDGVTLQLIDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL 115 I +A D+ K+ + S I A++V LV+D ++L Sbjct: 277 IRDALDTIEKIGVDRSRKAIHEAELVLLVLDLSQKL 312 >gi|328957352|ref|YP_004374738.1| GTP-binding protein EngA [Carnobacterium sp. 17-4] gi|328673676|gb|AEB29722.1| GTP-binding protein EngA [Carnobacterium sp. 17-4] Length = 437 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVSGVTRDRIYAPAEWLGKEFNVIDTGGIDLG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + AD++ + + ++ K + + + ++L +NK+D Sbjct: 65 DEPFLEQIKYQAEIAMDEADVIIFITSVKEHITDADENVAKILYRTNKPVLLAVNKVD-- 122 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + + + + + + F +S + G G D+L+ S P Sbjct: 123 NPEMRNDIFDFYS--LGLGEPFPISGSHGLGIGDLLDAAISHFP 164 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNAK 84 +L+G N GKS+LVN +G IV+ TTR +I V E ++ V +DT G+ Sbjct: 179 SLIGRPNVGKSSLVNAILGEDRVIVSSIAGTTRDAIDTAFVGEDGTEFVMIDTAGMRKKG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y + + + I+ +D+V V+++ ++ + + +I+++NK D Sbjct: 239 KVYENTERYSVLRALRAIERSDVVLCVLNAEEGIREQDKKVAGYAHEAGKGIIIVVNKWD 298 Query: 142 CVK 144 ++ Sbjct: 299 TLE 301 >gi|329942586|ref|ZP_08291396.1| GTP-binding proten HflX [Chlamydophila psittaci Cal10] gi|332287216|ref|YP_004422117.1| GTP-binding protein [Chlamydophila psittaci 6BC] gi|313847810|emb|CBY16801.1| putative GTP-binding protein [Chlamydophila psittaci RD1] gi|325506512|gb|ADZ18150.1| GTP-binding protein [Chlamydophila psittaci 6BC] gi|328815496|gb|EGF85484.1| GTP-binding proten HflX [Chlamydophila psittaci Cal10] gi|328914464|gb|AEB55297.1| GTP-binding protein HflX [Chlamydophila psittaci 6BC] Length = 462 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 11/166 (6%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 AL+G TN+GKSTL+N A+ + T R V +++ DT G Sbjct: 231 ALIGYTNSGKSTLLNLLTSAETYVEDKLFATLDPKTRRCVLPSGQRVLVTDTVGFIRKLP 290 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEIAKRSSRLILILNKID 141 + + H D++ VVD+ L ++LKE+ ++I +LNKID Sbjct: 291 HTLVAAFKSTLEAALHEDVLLHVVDASHPLAFEHIETTKEILKELGVDHPKIITVLNKID 350 Query: 142 CVKPERLLEQAEIANKLVFIE-KTFMVSATKGHGCDDVLNYLCSTL 186 L + + KL + + ++SA G G ++L + + Sbjct: 351 A------LPHGKASTKLRLLSPRAVLISAKTGEGIQNLLEAMTDVI 390 >gi|221042034|dbj|BAH12694.1| unnamed protein product [Homo sapiens] Length = 514 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V + G NAGKS+LVN VSIV+ + TTR ++ V ++ DT G Sbjct: 269 RSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAG 328 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI---------AKRS 130 + + +R + ++ AD++ ++D+ + + L + + S Sbjct: 329 LREGVGPVEQEGVRRARERLEQADLILAMLDASDLASPSSCNFLATVVASVGAQSPSDSS 388 Query: 131 SRLILILNKID 141 RL+L+LNK D Sbjct: 389 QRLLLVLNKSD 399 >gi|70607341|ref|YP_256211.1| GTP-binding protein [Sulfolobus acidocaldarius DSM 639] gi|68567989|gb|AAY80918.1| conserved GTP-binding protein [Sulfolobus acidocaldarius DSM 639] Length = 328 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 15/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + + G N GKS+LV++ AK I ++ TT+ I G ++ + +DTPGI + Sbjct: 158 TIIVAGPPNVGKSSLVSKISSAKPEIASYPF-TTKEIHVGHITSGILTVQVIDTPGILDR 216 Query: 84 KDSYHKLMIRLSWSTIKHAD-IVCLVVDSHRELKVNIH---DLLKEIAKRSSRLILILNK 139 ++ + + IK+ + I+ + D+ DL +EI +I ++NK Sbjct: 217 PMKDRNVVELKAINAIKNLNGIILFLFDASNSSMYTYKEQLDLYREIMGLGKVVIPVINK 276 Query: 140 IDCVKPERLLEQA---EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 ID + E L A EI N E+ F +SA K G +++LNY L Sbjct: 277 IDDLNEE--LYNAIKNEIKN-----EQIFEISAEKNTGINELLNYALKLL 319 >gi|253681508|ref|ZP_04862305.1| GTP-binding protein [Clostridium botulinum D str. 1873] gi|253561220|gb|EES90672.1| GTP-binding protein [Clostridium botulinum D str. 1873] Length = 397 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDT 77 NS +AL G TN+GKS+++N +G +S+V++ K TT + + + ++F+DT Sbjct: 6 NSNRKHIALYGKTNSGKSSILNAIIGQDISLVSNVKGTTTDPVSKAMELIPFGPVLFIDT 65 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 GI + + L + + T++ D+ ++D + + D ++ + I ++ Sbjct: 66 AGI-DDESQLGNLRVERTLKTLEKTDLAIYIMDINNIDENEYKDFQNKLKEHRIPYITVI 124 Query: 138 NKIDCV 143 NKID V Sbjct: 125 NKIDTV 130 >gi|167999799|ref|XP_001752604.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696135|gb|EDQ82475.1| predicted protein [Physcomitrella patens subsp. patens] Length = 481 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS+L+N + ++ +IVT TTR IV + + LDT GI + Sbjct: 222 VAIVGRPNVGKSSLLNAWSQSERAIVTDIPGTTRDIVEARMVVGGIAVNLLDTAGIRDTA 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D K+ + S + K AD++ +V+ + Sbjct: 282 DLVEKIGVERSEAVAKAADVIVMVISA 308 >gi|88705405|ref|ZP_01103116.1| tRNA modification GTPase trmE [Congregibacter litoralis KT71] gi|88700495|gb|EAQ97603.1| tRNA modification GTPase trmE [Congregibacter litoralis KT71] Length = 457 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 50/88 (56%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + GA NAGKS+L+N+ +IVT TTR ++R + + +DT G+ ++ D+ Sbjct: 224 IAGAPNAGKSSLLNQLAEQDSAIVTDIPGTTRDLLREHIQIDGLPLHIVDTAGLRDSGDA 283 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRE 114 + IR + S ++ AD + LVVD+ E Sbjct: 284 IEQEGIRRARSEMQSADHILLVVDNSGE 311 >gi|332296911|ref|YP_004438833.1| tRNA modification GTPase mnmE [Treponema brennaborense DSM 12168] gi|332180014|gb|AEE15702.1| tRNA modification GTPase mnmE [Treponema brennaborense DSM 12168] Length = 509 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 6/128 (4%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 QD +R V L G TNAGKS+L N + + +IV+ TTR + S D Sbjct: 225 QDGAR---VVLCGRTNAGKSSLFNMLLKEERAIVSDIHGTTRDWLESWASFGGIPARLFD 281 Query: 77 TPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS---SRL 133 T G+ D + +R ++ K AD++ VVD+ + L A + L Sbjct: 282 TAGLRETDDVVEQSGVRRTFDLTKDADLILYVVDAVEGITDEDESFLTAFAAAPNVRTPL 341 Query: 134 ILILNKID 141 ILILNK D Sbjct: 342 ILILNKCD 349 >gi|300871622|ref|YP_003786495.1| GTP-binding protein [Brachyspira pilosicoli 95/1000] gi|300689323|gb|ADK31994.1| GTP-binding protein [Brachyspira pilosicoli 95/1000] Length = 404 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 17/176 (9%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDT 77 NS +A+ G N GKS+++N V+IV+ TT V+ + K +DT Sbjct: 18 NSNRTHIAIFGRRNVGKSSIINAIANQDVAIVSDTAGTTTDPVKKAIEINKIGACTIVDT 77 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS------ 131 G F+ + +L I+ + ++ ADI LV D+ N +D L E+ ++ Sbjct: 78 AG-FDDEGELGELRIKRTKKIMESADIALLVFDA------NFNDYLLELKWKNELTSLEI 130 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 ++ +LNKID + +EQ K VF +T +SA D ++ + T+P Sbjct: 131 PIVAVLNKIDLNNNYKQIEQNI---KDVFDLETVSISANNKINIDKLVEAIKLTIP 183 >gi|257067216|ref|YP_003153472.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548] gi|256799096|gb|ACV29751.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548] Length = 452 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++G N GKS+L+N+ + +IVT TTR ++ +S + + DT GI Sbjct: 224 TTIIGKPNVGKSSLLNKMLKENRAIVTDVPGTTRDLITEYISFGDFTLKINDTAGIRETD 283 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 D K+ + S I +D++ + D+ R ++ I R++ I+ILNK D Sbjct: 284 DLVEKIGVDKSIELIDESDLIIAIFDTSRPFDKEDEKIIDLIKGRNA--IIILNKAD 338 >gi|225021216|ref|ZP_03710408.1| hypothetical protein CORMATOL_01228 [Corynebacterium matruchotii ATCC 33806] gi|224945949|gb|EEG27158.1| hypothetical protein CORMATOL_01228 [Corynebacterium matruchotii ATCC 33806] Length = 560 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 14/162 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+ G TNAGKS+L+N GA V + T R +VF DT G Sbjct: 334 IAIAGYTNAGKSSLINAITGAGVLVEDALFATLDPTTRRAELADGRTVVFTDTVGFVRHL 393 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--------IHDLLKEIAKRSSRLILI 136 + R + + AD+V VVD + I ++++E + + I++ Sbjct: 394 PTQLVEAFRSTLEEVVGADLVLHVVDGSDPFPLKQIAAVNKVIGEIVQEYGETAPPEIIV 453 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 +NKID P L E + +VF VSA G G ++ Sbjct: 454 VNKIDAADPLVLAELRHAVDDVVF------VSAHTGEGISEL 489 >gi|149277444|ref|ZP_01883585.1| GTP-binding protein EngA [Pedobacter sp. BAL39] gi|149231677|gb|EDM37055.1| GTP-binding protein EngA [Pedobacter sp. BAL39] Length = 433 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 7/161 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S +A+VG N GKSTL NR ++ +IV TR G + Q +DT G + Sbjct: 2 SNIIAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYGSAEWTDKQFTVIDTGGYV 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNK 139 N++D + + I+ A ++ +VD + ++ D + ++ +RS + + +++NK Sbjct: 62 ANSEDVFEAAIREQVVIAIEEATVLLFMVDVVTGI-TDLDDDIAQLLRRSKKPVFIVVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 +D + L A + E + +S+ G G D+L+ Sbjct: 121 VDNTQ---LQNDASVFYGFGLGE-IYPISSMTGSGTGDLLD 157 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 + +VG N GKS+L+N +G + +IVT TTR + ++ + +F+DT G+ Sbjct: 176 ITIVGRPNVGKSSLINALIGKERNIVTPIAGTTRDSIHIHYNQFGHEFMFIDTAGLRKKT 235 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K++ + + ++ AD+V L++D+ L+ ++ K +++++NK D Sbjct: 236 KVKENIEFYSVMRTIKALEEADVVVLMIDAMEGLESQDVNIFHLAEKNKKGIVILVNKWD 295 Query: 142 CVK 144 V+ Sbjct: 296 LVE 298 >gi|226229337|ref|YP_002763443.1| putative tRNA modification GTPase TrmE [Gemmatimonas aurantiaca T-27] gi|226092528|dbj|BAH40973.1| putative tRNA modification GTPase TrmE [Gemmatimonas aurantiaca T-27] Length = 452 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 16/167 (9%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V L G NAGKS+L N +G +IVT TTR + ++ + +DT G Sbjct: 219 RDGALVVLAGPPNAGKSSLFNALLGQSRAIVTPIAGTTRDAIEALLDRTPWPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + + D +L I +S + A +V D + I L A + ++ + K Sbjct: 279 LRDTTDPIEQLGIEVSRRYLAQAQVVLACGDDMESVVQTIEALAPHTA---ASVLAVHTK 335 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D + PE V I +VSA G G +L + + L Sbjct: 336 WDLIGPE---------TTWVNIH---LVSAESGEGLTSLLQAIDTAL 370 >gi|217967468|ref|YP_002352974.1| GTP-binding proten HflX [Dictyoglomus turgidum DSM 6724] gi|217336567|gb|ACK42360.1| GTP-binding proten HflX [Dictyoglomus turgidum DSM 6724] Length = 405 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 12/168 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +ALVG TNAGKSTL N GA V T VR + + +++ DT G Sbjct: 188 IALVGYTNAGKSTLFNLLTGANVRAEDLLFATLDPTVRKVNFKNNWEVLISDTVGFIRNL 247 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNI---HDLLKEIAKRSSRLILILNKI 140 R + I + D++ V+D S ++ + I +L+++ +I + NKI Sbjct: 248 PEELLTAFRATLEEIYYVDLILHVIDISDKDFRKQIEVVESILEDMGIEDKTIIRVYNKI 307 Query: 141 DCVKPE--RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 D + E R L+Q VFI SA +G G + + + + + L Sbjct: 308 DLLSKEEVRYLKQELDYKPSVFI------SAKEGIGIEKLKDLIVNEL 349 >gi|328472284|gb|EGF43154.1| GTPase HflX [Vibrio parahaemolyticus 10329] Length = 429 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL NR A V T +R + + DT G Sbjct: 199 TISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKMELADVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE +H++L+EI ++++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVHEVLEEIDAHEVPTLVVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ + I + + VSA +G G + + + L L Sbjct: 317 NKIDNLES----QTPRIERDEEGVPRAVWVSAMEGLGIELLFDALTERL 361 >gi|325290811|ref|YP_004266992.1| iron-only hydrogenase maturation protein HydF [Syntrophobotulus glycolicus DSM 8271] gi|324966212|gb|ADY56991.1| iron-only hydrogenase maturation protein HydF [Syntrophobotulus glycolicus DSM 8271] Length = 417 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 76/148 (51%), Gaps = 14/148 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++L G NAGKS+L+N +++V+ TT + + + ++ +DT G+ + Sbjct: 12 ISLFGRRNAGKSSLINALTNQDIALVSDVPGTTTDPVYKAMEILPIGPVMLIDTAGLDDV 71 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKI 140 S +L +R S + D+ LVVDS + + NI+DL E R+ +++I NKI Sbjct: 72 G-SLGELRVRKSRQVLDKTDVTLLVVDSGTGFGDFEKNIYDLCVE---RNIPVLIIFNKI 127 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVS 168 D + + ++ + N L E+T+ +S Sbjct: 128 DLINED---QKKALQNNL---EQTYGLS 149 >gi|257125220|ref|YP_003163334.1| GTP-binding protein EngA [Leptotrichia buccalis C-1013-b] gi|257049159|gb|ACV38343.1| small GTP-binding protein [Leptotrichia buccalis C-1013-b] Length = 441 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL N+ VG ++SIV + TR + + + + +DT G+ Sbjct: 4 TVAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYREIEWSGKEFILVDTGGLEPR 63 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + I+ + I AD++ +VD + D+ + ++ ++++ +NKID Sbjct: 64 TEDFMMGKIKQQAQVAIDEADVIIFLVDGKAGITGLDEDVATVLRRQDKKVVVAVNKID 122 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKS+LVN+ + + SIV+ TTR + + +DT GI Sbjct: 178 IAILGRPNAGKSSLVNKLLNEERSIVSDIAGTTRDSIDSSLRYNGETYTLIDTAGIRRKS 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +D I + IK AD+ L++D+ L + I + +I+ +NK D Sbjct: 238 KVEDDIEYYSILRAMKAIKRADVCVLMLDATELLTDQDKRIAGMIYEERKPIIIAVNKWD 297 Query: 142 CVK 144 ++ Sbjct: 298 LIE 300 >gi|28899590|ref|NP_799195.1| putative GTPase HflX [Vibrio parahaemolyticus RIMD 2210633] gi|260361397|ref|ZP_05774459.1| GTP-binding protein HflX [Vibrio parahaemolyticus K5030] gi|260876669|ref|ZP_05889024.1| GTP-binding protein HflX [Vibrio parahaemolyticus AN-5034] gi|260896638|ref|ZP_05905134.1| GTP-binding protein HflX [Vibrio parahaemolyticus Peru-466] gi|260900898|ref|ZP_05909293.1| GTP-binding protein HflX [Vibrio parahaemolyticus AQ4037] gi|28807826|dbj|BAC61079.1| GTP-binding protein HflX [Vibrio parahaemolyticus RIMD 2210633] gi|308086310|gb|EFO36005.1| GTP-binding protein HflX [Vibrio parahaemolyticus Peru-466] gi|308093962|gb|EFO43657.1| GTP-binding protein HflX [Vibrio parahaemolyticus AN-5034] gi|308106524|gb|EFO44064.1| GTP-binding protein HflX [Vibrio parahaemolyticus AQ4037] gi|308112890|gb|EFO50430.1| GTP-binding protein HflX [Vibrio parahaemolyticus K5030] Length = 429 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 12/169 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL NR A V T +R + + DT G Sbjct: 199 TISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKMELADVGPAILADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE +H++L+EI ++++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVHEVLEEIDAHEVPTLVVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ + I + + VSA +G G + + + L L Sbjct: 317 NKIDNLES----QTPRIERDEEGVPRAVWVSAMEGLGIELLFDALTERL 361 >gi|332853901|ref|XP_001161204.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Pan troglodytes] Length = 354 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V + G NAGKS+LVN VSIV+ + TTR ++ V ++ DT G Sbjct: 109 RSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAG 168 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI---------AKRS 130 + + +R + ++ AD++ ++D+ + + L + + S Sbjct: 169 LREGVGPVEQEGVRRARERLEQADLILAMLDASDLASPSSCNFLATVVASVGAQSPSDSS 228 Query: 131 SRLILILNKID 141 RL+L+LNK D Sbjct: 229 QRLLLVLNKSD 239 >gi|261400171|ref|ZP_05986296.1| ribosome-associated GTPase EngA [Neisseria lactamica ATCC 23970] gi|269210170|gb|EEZ76625.1| ribosome-associated GTPase EngA [Neisseria lactamica ATCC 23970] Length = 485 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 A++G N GKSTLVN +G + I TTR + I E+E + +DT G+ Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDTAGVRRRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++ LV+D+ +++ + + L++ +NK D Sbjct: 238 KVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWD 297 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + ER + + +I+ KL F++ K +SA K G D + + + + Sbjct: 298 GISEERREQVKRDISRKLYFLDFAKFHFISALKERGIDGLFDSIQAA 344 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD L Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGL 96 >gi|167948162|ref|ZP_02535236.1| GTP-binding protein Era [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 137 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 3/98 (3%) Query: 126 IAKRSSRLILILNKIDCV-KPERLLE-QAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 + +R+ +IL +NK+D V + E LL AE+A + F E +SA+ GH D + + Sbjct: 39 LQERTMPVILAVNKVDQVNQKEALLPFLAEMAERYDFAE-IIPISASNGHNVDALEKLVL 97 Query: 184 STLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHK 221 LPLA Y +Q++D P F AE+ RE+ + L + Sbjct: 98 ERLPLADNFYPEEQLTDRPEKFFAAEMVREQDYPSLRQ 135 >gi|91775967|ref|YP_545723.1| small GTP-binding protein domain-containing protein [Methylobacillus flagellatus KT] gi|91709954|gb|ABE49882.1| Small GTP-binding protein domain [Methylobacillus flagellatus KT] Length = 499 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 9/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 + LVG N GKSTL NR + ++V TR RG+V K +V DT G Sbjct: 5 TIVLVGRPNVGKSTLFNRLTKTRDALVADLPGLTRDRHYGRGVVGSKPYLVV--DTGGFE 62 Query: 82 NAKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 DS K M R + I AD+V +VD L + + + K ++L +NK Sbjct: 63 PLVDSGILKEMARQTLLAIDEADVVIFLVDGRNGLAPQDKVIAERLRKSQRPILLAVNKT 122 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + + +R + AE + + +S+ G G D++ P Sbjct: 123 EGM--QRAIASAEFHE--LGLGHPLSISSAHGEGVRDLVELALENFP 165 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 6/181 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTLVN +G + I + TTR + + + +DT G+ Sbjct: 181 VAIVGRPNVGKSTLVNALLGEERVIAFDQPGTTRDSIYLDLERNGKRYTIIDTAGVRRRG 240 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++ LVVD+ + + I L++ +NK D Sbjct: 241 KVFEAVEKFSVIKTMQAIEEANVAILVVDAQEGITEQDAHVSAYILDSGRALVVAVNKWD 300 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 ++ + R + EI KL F++ K +SA + G ++ + + + A S Q+ Sbjct: 301 GLEDDKREWIKREIDRKLQFLDFAKFHYISALRKKGLGELFHSVDAAYKAAMAKLSTPQL 360 Query: 199 S 199 + Sbjct: 361 T 361 >gi|77551765|gb|ABA94562.1| small GTP-binding protein domain containing protein, expressed [Oryza sativa Japonica Group] gi|218194387|gb|EEC76814.1| hypothetical protein OsI_14944 [Oryza sativa Indica Group] Length = 552 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 15/190 (7%) Query: 5 EITFFNEHKDFVQDNSRS---GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ +H+ ++ +S V+LVG TNAGKSTL+NR GA V T Sbjct: 307 ELESVRKHRKLYRNRRQSVPIPVVSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTT 366 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN--- 118 R ++ + ++ + DT G + R + I + ++ +VD L Sbjct: 367 RRVLMKNGTEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSVIVHLVDISHPLAQQQID 426 Query: 119 -IHDLLKEIAKRSSRLILILNKIDCVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 + +LKE+ S +++ NKID R+ E+AE + +SA G G + Sbjct: 427 AVDKVLKELDIESIPKLVVWNKIDNTDDTLRVKEEAE-------KQGIICISAINGDGLE 479 Query: 177 DVLNYLCSTL 186 + N + + L Sbjct: 480 EFCNAIQAKL 489 >gi|325919426|ref|ZP_08181452.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Xanthomonas gardneri ATCC 19865] gi|325550092|gb|EGD20920.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Xanthomonas gardneri ATCC 19865] Length = 465 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 VALVG N GKST+ N + ++V + TR G+ ++E + +DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEERPFIVVDTGGIAGD 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHD-LLKEIAKRSSRLILILNKIDC 142 ++ R + + AD+V VVD RE ++ D +L + K + +L++NKID Sbjct: 65 EEGLAGATARQARAAAGEADLVLFVVDG-REGASSLDDEILAWLRKLARPTVLVINKIDG 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E + ++E A +SA G D++L + + LP Sbjct: 124 TDEETV--RSEFAR--YGFSDVVALSAAHRQGIDELLEEVGARLP 164 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 8/182 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A VG N GKSTLVNR +G + I + TTR + + Q +DT G+ Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDMDRDGRQYRLIDTAGLRRRG 240 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + I+ + L++D+ + +L I L++ +NK D Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLMLDAGEGVTDQDATILGAILDAGRALVVAINKWD 300 Query: 142 CVKPERLLEQAE--IANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + + QAE ++ KL F+ + +SA G G ++ + A +S + Sbjct: 301 G-QSDYQRAQAEDLLSRKLGFVSWAEAVRISALHGSGMRELFQAIHRAHASATHEFSTSE 359 Query: 198 IS 199 ++ Sbjct: 360 VN 361 >gi|319794352|ref|YP_004155992.1| GTP-binding proten hflx [Variovorax paradoxus EPS] gi|315596815|gb|ADU37881.1| GTP-binding proten HflX [Variovorax paradoxus EPS] Length = 389 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 16/162 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKS+L N V A+ T + R + + + + Q+ DT G Sbjct: 202 ISLVGYTNAGKSSLFNALVKARAYAADQLFATLDTTTRNLYLGDAKRQVSISDTVGFI-- 259 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDS----HRELKVNIHDLLKEIAKRSSRLILIL 137 +D H L+ + + AD++ V+D+ + E + +L+EI + +L+ Sbjct: 260 RDLPHGLVDAFKATLQEAVDADLLLHVIDASNPHYPEQMAEVQSVLREIGADTVPQLLVF 319 Query: 138 NKIDCV----KPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 NK+D + +P L ++ EI V + + F+ SA G G Sbjct: 320 NKLDALESAQRPLHLQDEMEIDG--VQVPRIFL-SAKSGEGV 358 >gi|295398957|ref|ZP_06808939.1| ribosome-associated GTPase EngA [Geobacillus thermoglucosidasius C56-YS93] gi|294978423|gb|EFG54019.1| ribosome-associated GTPase EngA [Geobacillus thermoglucosidasius C56-YS93] Length = 436 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGI-DI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + IR I AD++ + + + ++ K + + + ++L +NKID Sbjct: 64 GDEPLLVQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKILHRSNKPVVLAVNKIDN 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L+ L F + + +S G G D+L+ + P Sbjct: 124 PEMRDLIYD---FYALGFGD-PYPISGAHGTGLGDLLDAVARHFP 164 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G N GKS+LVN +G + IV+ TTR V + + V +DT G+ Sbjct: 180 LIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKRGKI 239 Query: 87 Y---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 Y K + + I+ +D+V +V+++ + + + +I+++NK D + Sbjct: 240 YENTEKYSVLRALKAIERSDVVLVVLNAEEGIIEQDKKIAGYAHEAGRGVIIVVNKWDAI 299 Query: 144 K 144 + Sbjct: 300 E 300 >gi|238750114|ref|ZP_04611617.1| Uncharacterized GTP-binding protein yhbZ [Yersinia rohdei ATCC 43380] gi|238711658|gb|EEQ03873.1| Uncharacterized GTP-binding protein yhbZ [Yersinia rohdei ATCC 43380] Length = 370 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 22/182 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G NAGKST + AK + + T + + + E V D PG+ Sbjct: 142 VGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLIPSLGVVRMDHEQSFVVADIPGLIEGA 201 Query: 85 DSYHKLMIRLSWSTIKHAD-------IVCLVVDSHRELKVNIHDLLKEIAKRSSRLI--- 134 L IR +KH + +V L + N ++ E+ + S L Sbjct: 202 SDGAGLGIRF----LKHLERCRVLLHLVDLAPIDESDPVENAKIIINELQQYSENLAEKP 257 Query: 135 --LILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHG----CDDVLNYLCSTLP 187 L+ NKID V PE +A+ I + L + K +M+SA C DV+N+L +T P Sbjct: 258 RWLVFNKIDLVDPEEAEARAKAIVDALGWEGKYYMISAANRENVNALCWDVMNFL-NTQP 316 Query: 188 LA 189 A Sbjct: 317 KA 318 >gi|154487333|ref|ZP_02028740.1| hypothetical protein BIFADO_01183 [Bifidobacterium adolescentis L2-32] gi|154083851|gb|EDN82896.1| hypothetical protein BIFADO_01183 [Bifidobacterium adolescentis L2-32] Length = 709 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 G +A+VG N GKSTLVNR +G + ++V TR V + +DT G Sbjct: 273 GVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLVDTGGWEA 332 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + ++ AD V LVVD L ++K + + L +NK+D Sbjct: 333 DVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTLAVNKVDD 392 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 + E L AE + + + + +SA G G ++L+ +L A Sbjct: 393 RESEYL--TAEFWK--MGLGEPYGISAMHGRGIGELLDAALDSLKKA 435 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 24/181 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVG N GKS+L+N+ + ++V TTR V +V+ +F+DT GI K Sbjct: 450 VALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGI---K 506 Query: 85 DSYHKLMIRLSWST------IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 HKL +S+ I+ +++ ++ D+ + + ++ + ++L+ N Sbjct: 507 RRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFN 566 Query: 139 KIDCV------KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL--PLAP 190 K D + + ERL + N++ + ++ + + T H N L + + LA Sbjct: 567 KWDLMDEFDRQRMERLWKTE--FNRVTWAQRVNLSAKTGWH-----TNRLANAMRGALAS 619 Query: 191 W 191 W Sbjct: 620 W 620 >gi|300691800|ref|YP_003752795.1| GTP-binding protein hflX, GTPase activity [Ralstonia solanacearum PSI07] gi|299078860|emb|CBJ51521.1| GTP-binding protein hflX, GTPase activity [Ralstonia solanacearum PSI07] Length = 417 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 7/167 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A+ T + R + + +V DT G Sbjct: 203 SVSLVGYTNAGKSTLFNALTKARAYAANQLFATLDTTSRRLYLDGLGNVVLSDTVGFIRD 262 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRLILILN 138 + R + HAD++ VVD+ H +++ + +L EI IL++N Sbjct: 263 LPTQLVAAFRATLEETVHADVLLHVVDAASAVKHEQME-QVDRVLAEIDASGIPQILVMN 321 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 KID + R + I + VSA G G + + L T Sbjct: 322 KIDAAEELR-TQGPRIERDEAGAVRRVFVSALDGTGLELLREALVET 367 >gi|291302023|ref|YP_003513301.1| GTP-binding proten HflX [Stackebrandtia nassauensis DSM 44728] gi|290571243|gb|ADD44208.1| GTP-binding proten HflX [Stackebrandtia nassauensis DSM 44728] Length = 466 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 21/185 (11%) Query: 16 VQDNSRSG-------CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 V+D RS VA+ G TNAGKS+L+NR GA V + T R + Sbjct: 231 VRDTKRSSRRRHSVPSVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTTRRARTGD 290 Query: 69 ESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELKVN---IHDL 122 DT G + H+L+ R + + AD++ V+D SH + + ++ Sbjct: 291 GRDYTLSDTVGFVSHL--PHQLVDAFRSTLEEVADADLIVHVIDGSHPDPGAQVRAVREV 348 Query: 123 LKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 L ++ + +L++NKID E LL VF VSA G G D + + + Sbjct: 349 LNDVGADAVPEVLVVNKIDRAGSEALLTLRTDWPDAVF------VSAHTGEGVDKLRDVI 402 Query: 183 CSTLP 187 LP Sbjct: 403 EERLP 407 >gi|114778886|ref|ZP_01453683.1| tRNA modification GTPase [Mariprofundus ferrooxydans PV-1] gi|114550855|gb|EAU53421.1| tRNA modification GTPase [Mariprofundus ferrooxydans PV-1] Length = 393 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 26/164 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VALVGA N GKS+L+N G + +IV+H TTR ++ + DT G+ ++ Sbjct: 175 VALVGAPNVGKSSLLNALSGRERAIVSHLEGTTRDLLDVDFEVNGIPLRLTDTAGLRDSH 234 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR--ELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D +R + AD+ V D+ R +IH L L++NK+D Sbjct: 235 DVVEIEGVRRALQVASTADVTLFVADASRPDTWSPSIHADL-----------LLMNKVD- 282 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 LE +I ++ + +S G G +++ + L S L Sbjct: 283 ------LESGDIPDEYI------QLSVISGEGLNELRSRLASFL 314 >gi|56476104|ref|YP_157693.1| GTP-binding protein hflX [Aromatoleum aromaticum EbN1] gi|56312147|emb|CAI06792.1| GTP-binding protein hflX [Aromatoleum aromaticum EbN1] Length = 385 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 13/158 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+LVG TNAGKSTL N A T + R + + +V DT G Sbjct: 199 SVSLVGYTNAGKSTLFNALTKAGAYAADQLFATLDTTSRRLYVGEGGNVVLSDTVGFI-- 256 Query: 84 KDSYHKLMIRL--SWSTIKHADIVCLVVDS---HRELKVN-IHDLLKEIAKRSSRLILIL 137 +D H L+ + AD++ VVD+ RE +V+ ++ +L EI I+++ Sbjct: 257 RDLPHSLVAAFHSTLEETASADLLLHVVDAASEDREAQVDAVNRVLVEIGAGDVPQIMVM 316 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGC 175 NKID + E + E I++ F+ SA G G Sbjct: 317 NKIDLTQAEAAANRDEYGK----IDRVFL-SARTGEGL 349 >gi|33865612|ref|NP_897171.1| hypothetical protein SYNW1078 [Synechococcus sp. WH 8102] gi|33632782|emb|CAE07593.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 531 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 6/138 (4%) Query: 7 TFFNEHKDFVQDNSRSGCVALV-GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI--VRG 63 + E + QD +R V +V G ++GK++L+ + V V + +TRS R Sbjct: 116 SLRQERERVEQDLARGDLVVVVFGTGSSGKTSLIRALLQDMVGDVAAAMGSTRSTPSYRL 175 Query: 64 IVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLL 123 + E + +DTPGI A D R ++ AD++ +VVD +L+ + +L Sbjct: 176 RLKGMERGLRLVDTPGILEAGDGGLNREERARQQAVR-ADLLLVVVDG--DLRSSEMTVL 232 Query: 124 KEIAKRSSRLILILNKID 141 + +A RL+L+LNK D Sbjct: 233 RTLAGLGKRLLLVLNKRD 250 >gi|289670320|ref|ZP_06491395.1| GTP-binding protein Era [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 45 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 24/37 (64%), Positives = 29/37 (78%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT 57 RSG VA++G N GKSTL N VGAKVSIV+++ QTT Sbjct: 9 RSGSVAVIGRPNVGKSTLTNAMVGAKVSIVSNRPQTT 45 >gi|256810043|ref|YP_003127412.1| small GTP-binding protein [Methanocaldococcus fervens AG86] gi|256793243|gb|ACV23912.1| small GTP-binding protein [Methanocaldococcus fervens AG86] Length = 185 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 30/188 (15%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR--------GIVSEKES-- 70 R +A++G NAGKS+++N G VS+V+ TT+ ++ G V E+ Sbjct: 4 REFKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKKYWGKLKIGRVKEEPEFV 63 Query: 71 QIVFLDTPGIFNAKDSYHKLM----IRLSWSTIKHADIVCLVVDSHRELKVN---IHDLL 123 +VF+D G++ D +M + ++ IK AD++ V+D L + +H LL Sbjct: 64 NLVFVDLGGLYTTTDKQSPIMTPKVLEKTYEEIKDADMIIHVIDGSVGLLRSFERLHHLL 123 Query: 124 KEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEK-----TFMVSATKGHGCDDV 178 K + +I+++NK D LL + N ++EK VSA G ++ Sbjct: 124 K--FRYQKPIIVVINKCD------LLNYDDRENLKNYVEKRIKNTPIFVSAKTFEGIPEL 175 Query: 179 LNYLCSTL 186 L + + L Sbjct: 176 LRIIINYL 183 >gi|297205894|ref|ZP_06923289.1| ribosome-associated GTPase EngA [Lactobacillus jensenii JV-V16] gi|297149020|gb|EFH29318.1| ribosome-associated GTPase EngA [Lactobacillus jensenii JV-V16] Length = 439 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 4/125 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV-RGIVSEKESQIVFLDTPGIFN 82 +++G N GKS+++N +G K IV ++ TTR V V+E ++ +DT GI Sbjct: 179 AFSVIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRR 238 Query: 83 AKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 Y K + + + I+ +D+VCLV+D+ ++ + +I+++NK Sbjct: 239 RGKVYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMIIVVNK 298 Query: 140 IDCVK 144 D K Sbjct: 299 WDLPK 303 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 14/181 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTL NR + +++IV + TR S + +DT GI Sbjct: 8 TVAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWE 67 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK---RSSR-LILILNK 139 + + ++ AD++ ++ + +++ DL + IA+ RSS+ +IL +NK Sbjct: 68 GGRIEDEIRAQADIAMEEADVIVMIT----SVALHLTDLDERIARILYRSSKPVILAVNK 123 Query: 140 IDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQI 198 D PE ++A+I + + +S+T G G D+L+ + P D+I Sbjct: 124 AD--NPE---QRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAVVENFPPEADTKDEDEI 178 Query: 199 S 199 + Sbjct: 179 A 179 >gi|157412546|ref|YP_001483412.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9215] gi|166991113|sp|A8G2J5|MNME_PROM2 RecName: Full=tRNA modification GTPase mnmE gi|157387121|gb|ABV49826.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9215] Length = 460 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 6/122 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +AL+G TN GKS+L+N + +IVT+ TTR ++ ++ + + +DT GI Sbjct: 230 IALIGKTNVGKSSLLNLLAKKEKAIVTNIPGTTRDVIEINLTINDIPMKIIDTAGIRETS 289 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NK---I 140 + ++ I+ S+ IK +D + + +++EI K +LI IL NK I Sbjct: 290 EQIERIGIKKSFRKIKESDFIIYIYSLEEGFNEEDKKIIQEIPKE--KLITILGNKKDLI 347 Query: 141 DC 142 DC Sbjct: 348 DC 349 >gi|149908098|ref|ZP_01896766.1| putative GTP-binding protein HflX [Moritella sp. PE36] gi|149809104|gb|EDM69035.1| putative GTP-binding protein HflX [Moritella sp. PE36] Length = 447 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 14/138 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 VALVG TNAGKS+L+ G++V + T + VR + + +I+ DT G Sbjct: 227 VALVGYTNAGKSSLMRALTGSEVLVEDKLFATLDTTVRTLQPPTKPRILISDTVGFIQKL 286 Query: 82 --NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLIL 135 + S+H + K+AD++ VVD+ E ++ + +L ++ + +L Sbjct: 287 PHDLVASFHS-----TLEEAKNADLLLYVVDASDENFISQLAIVDHVLGQLDIDLNNKVL 341 Query: 136 ILNKIDCVKPERLLEQAE 153 +LNK+DC+ E+ L+ E Sbjct: 342 LLNKVDCLSEEQQLDLLE 359 >gi|313888319|ref|ZP_07821990.1| ribosome biogenesis GTPase Der [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845722|gb|EFR33112.1| ribosome biogenesis GTPase Der [Peptoniphilus harei ACS-146-V-Sch2b] Length = 446 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 13/175 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 DN R V L+G N GKS+L+N G SIVT+ TTR + ++ K ++ +F+D Sbjct: 173 DDNIR---VTLIGKPNVGKSSLLNYLTGENRSIVTNIPGTTRDSIDSLIKYKGNEYIFVD 229 Query: 77 TPGIFNAKD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ K + + + + I+ +++ L++D+ + ++ + + Sbjct: 230 TAGLRKKKKIVPGVERYSVIRTLTAIERSNVCVLMIDALEGVTEQDSKIVGYAHDNNKAI 289 Query: 134 ILILNKIDCVKPE----RLLEQAEIANKLVFIEKT--FMVSATKGHGCDDVLNYL 182 I+ +NK D ++ E R E+ +I +L F+ +SA G ++ L+ + Sbjct: 290 IIAVNKWDALEKETKTMRNFEK-KIREELPFVTYAPIVFISAKTGQRVNEFLDMI 343 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 15/169 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++++G N GKSTL N+ VG KVSI TR + + + + +DT G+ + Sbjct: 5 IISIIGRPNVGKSTLFNKIVGRKVSITEDTPGVTRDRIYQPATWLNYKFLLVDTGGL-DL 63 Query: 84 KD-----SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 KD S K I ++ T +D+V VVD + ++ + K ++++L +N Sbjct: 64 KDEDIFMSSIKAQIDIALET---SDVVIFVVDGAEGVNPTDREISNFLRKTKTKVVLAVN 120 Query: 139 KIDC-VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K D + + + + E+ + + +SA +G G D+L+ L Sbjct: 121 KYDSKITKDNIYDFYELG-----LGEPIGISAEQGTGVGDLLDEAVDGL 164 >gi|312110436|ref|YP_003988752.1| ribosome-associated GTPase EngA [Geobacillus sp. Y4.1MC1] gi|311215537|gb|ADP74141.1| ribosome-associated GTPase EngA [Geobacillus sp. Y4.1MC1] Length = 436 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG ++SIV TR + + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGI-DI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + IR I AD++ + + + ++ K + + + ++L +NKID Sbjct: 64 GDEPLLVQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKILHRSNKPVVLAVNKIDN 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + L+ L F + + +S G G D+L+ + P Sbjct: 124 PEMRDLIYD---FYALGFGD-PYPISGAHGTGLGDLLDAVARHFP 164 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G N GKS+LVN +G + IV+ TTR V + + V +DT G+ Sbjct: 180 LIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKRGKI 239 Query: 87 Y---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 Y K + + I+ +D+V +V+++ + + + +I+++NK D + Sbjct: 240 YENTEKYSVLRALKAIERSDVVLVVLNAEEGIIEQDKKIAGYAHEAGRGVIIVVNKWDAI 299 Query: 144 KPE--RLLE-QAEIANKLVFIE 162 + + L+E + +I N F++ Sbjct: 300 EKDDKTLIEFERKIRNHFPFLD 321 >gi|148252030|ref|YP_001236615.1| GTPase ObgE [Bradyrhizobium sp. BTAi1] gi|261266687|sp|A5E965|OBG_BRASB RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|146404203|gb|ABQ32709.1| GTP-binding protein with nucleoside triP hydrolase domain [Bradyrhizobium sp. BTAi1] Length = 356 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 25/190 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 LVG NAGKST +++ AK I + T + G+V+ + V D PG+ Sbjct: 162 AGLVGLPNAGKSTFLSKVSAAKPKIADYPFTTLHPQL-GVVNADGREFVLADIPGLIEGA 220 Query: 85 DSYHKL-------------MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 L ++ L +T +HA V EL+ DL ++ Sbjct: 221 HEGAGLGDRFLGHVERCRVLLHLVDATCEHAGKAYKTV--RHELEAYGGDLTDKVE---- 274 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKT-FMVSATKGHGCDDVLNYLCSTLPLAP 190 I+ LNKID V P+ L +Q + + +KT ++S G G + L L + P Sbjct: 275 --IVALNKIDAVDPDELKKQKDRLKRAA--KKTPLLISGATGEGVKEALRKLADVISEQP 330 Query: 191 WVYSADQISD 200 A SD Sbjct: 331 VSIKAKSTSD 340 >gi|167629165|ref|YP_001679664.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1] gi|205829157|sp|B0TAB6|MNME_HELMI RecName: Full=tRNA modification GTPase mnmE gi|167591905|gb|ABZ83653.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1] Length = 466 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 25/220 (11%) Query: 18 DNSRSGCV-------ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 + SR+G V +VG N GKS+L+N + + +IVT TTR + + Sbjct: 211 ERSRTGRVLREGWRTVIVGRPNVGKSSLMNALLDEQRAIVTEIPGTTRDAIEEYIDLGGI 270 Query: 71 QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 + +DT GI +D ++ + + ++ AD+ +V+D L LL +A R Sbjct: 271 PLRIVDTAGIRETEDVVERIGVEKTREYLEKADLALVVLDGSDSLTAEDETLLLSLAGRP 330 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + ++++NK D R L++ + LV VSA +G G ++ + Sbjct: 331 A--VVLVNKSDLAV--RRLDEKRL-RSLVGEMPIISVSAKEGWGLKELTELIRRM----- 380 Query: 191 WVYSADQISDLPMFHFTAEITR-------EKLFLHLHKEI 223 VY D + P A +T+ E+ + HL + + Sbjct: 381 -VYGDDGLGYAPDGGRLALVTQARHREALERSYAHLRQAL 419 >gi|89256256|ref|YP_513618.1| protease, GTP-binding subunit [Francisella tularensis subsp. holarctica LVS] gi|115314713|ref|YP_763436.1| protease, GTP-binding subunit [Francisella tularensis subsp. holarctica OSU18] gi|167011007|ref|ZP_02275938.1| GTP-binding protein HflX [Francisella tularensis subsp. holarctica FSC200] gi|290953596|ref|ZP_06558217.1| protease, GTP-binding subunit [Francisella tularensis subsp. holarctica URFT1] gi|295313097|ref|ZP_06803787.1| protease, GTP-binding subunit [Francisella tularensis subsp. holarctica URFT1] gi|89144087|emb|CAJ79338.1| protease, GTP-binding subunit [Francisella tularensis subsp. holarctica LVS] gi|115129612|gb|ABI82799.1| GTP-binding protein HflX [Francisella tularensis subsp. holarctica OSU18] Length = 435 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 26/205 (12%) Query: 12 HKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 H+D + + + ++ VG TNAGKSTL N+ A V T +R ++ K Sbjct: 188 HRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFATLDPTLRKVIVPK 247 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA---DIVCLVVD----SHRELKVNIHD 121 +I+F DT G K+ H L + +T++ A D++ V+D H+ + Sbjct: 248 LGEIIFSDTVGFI--KNLPHNL-VEAFHATLEEAIESDLLVHVIDYADEDHKSYIEQVEK 304 Query: 122 LLKEIAKRSSRLILILNKID---CVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDD 177 +L EI I + NKID +KP + LE ++ + + + ++ SA G G + Sbjct: 305 VLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSS----VVSRVYL-SAQNGDGLVE 359 Query: 178 VLNYLCSTLPLAPWVYSADQISDLP 202 L +T W+ +Q DLP Sbjct: 360 FYQAL-ATFFNKTWI---NQTLDLP 380 >gi|39933239|ref|NP_945515.1| GTPase ObgE [Rhodopseudomonas palustris CGA009] gi|81829804|sp|Q6NDE6|OBG_RHOPA RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|39652864|emb|CAE25606.1| possible GTP-binding proteins [Rhodopseudomonas palustris CGA009] Length = 353 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 25/192 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 LVG NAGKST +++ AK I + T + G+V+ + V D PG+ Sbjct: 162 AGLVGLPNAGKSTFLSKVSAAKPKIADYPFTTLHPQL-GVVNSDGREFVLADIPGLIEGA 220 Query: 85 DSYHKL-------------MIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 L ++ L +T +HA V EL+ L+ +I Sbjct: 221 HEGAGLGDRFLGHIERCRVLLHLIDATCEHAGKAYKTVRG--ELEAYAETLVDKIE---- 274 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFIEKT-FMVSATKGHGCDDVLNYLCSTLPLAP 190 I+ LNKID V+P+ L +Q + + +KT ++S G G + L L + + AP Sbjct: 275 --IVALNKIDAVEPDELKKQKDRLKRAA--KKTPLLLSGVTGQGVPEALRALVAVIGEAP 330 Query: 191 WVYSADQISDLP 202 A +D P Sbjct: 331 VSDKAIGTADNP 342 >gi|14521033|ref|NP_126508.1| gtp1/obg family GTP-binding protein [Pyrococcus abyssi GE5] gi|5458250|emb|CAB49739.1| GTP-binding protein, putative [Pyrococcus abyssi GE5] Length = 357 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 20/198 (10%) Query: 6 ITFFNEHKDFVQD----NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 + + N+ ++ ++D + + V + G N GKSTL+ AK I ++ TTR I Sbjct: 147 LRYLNKAREVLKDLPVVDLETPTVVIAGHPNVGKSTLLKALTTAKPEIASYPF-TTRGIN 205 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH-ADIVCLVVDSHR----ELK 116 G + + +DTPG+ + S + + + +K+ +++ + D L+ Sbjct: 206 VGQFEDGYFRYQVIDTPGLLDRPLSERNEIEKQAILALKYLGNLIIYIFDPSEYCGFPLE 265 Query: 117 VNIHDLLKEIAK--RSSRLILILNKIDCVKPE--RLLEQAEIANKLVFIEKTFMVSATKG 172 IH L EI + + ++++NKID + + R++E+ + F++ +SA KG Sbjct: 266 EQIH-LFNEIYEEFKDMPFLVVINKIDVAEEDKIRIVEELVKEKGIKFLK----ISALKG 320 Query: 173 HGCDDVLNYLCSTL-PLA 189 G D V + TL PLA Sbjct: 321 EGVDKVREEITKTLRPLA 338 >gi|307942253|ref|ZP_07657604.1| GTP-binding protein HflX [Roseibium sp. TrichSKD4] gi|307774539|gb|EFO33749.1| GTP-binding protein HflX [Roseibium sp. TrichSKD4] Length = 463 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR + V T +R I +I+ DT G + Sbjct: 236 VVALVGYTNAGKSTLFNRMTESNVFAKDLLFATLDPTLRKIRLPHGREIILSDTVGFISD 295 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHDLLKEI------AKRSSRLILI 136 ++ R + + AD++ V D SH + + D+ K + ++ +I + Sbjct: 296 LPTHLVAAFRATLEEVLEADLILHVRDISHPDSEAQCEDVKKTLVDLGVDGSHAAPVIEV 355 Query: 137 LNKIDCVKP---ERLLEQA 152 NKID + P E+LLE A Sbjct: 356 WNKIDALDPAYREKLLEDA 374 >gi|307297254|ref|ZP_07577060.1| GTP-binding proten HflX [Thermotogales bacterium mesG1.Ag.4.2] gi|306916514|gb|EFN46896.1| GTP-binding proten HflX [Thermotogales bacterium mesG1.Ag.4.2] Length = 400 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 36/230 (15%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V+ VG TN GKS+LV+ + I T + VR Q++ DT G Sbjct: 178 LVSFVGYTNVGKSSLVSEISSEDLIIEDKLFATLDTRVRKAKLPAGMQLLVSDTVGFI-- 235 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSHR---ELKVNIHD-LLKEIAKRSSRLILIL 137 ++ H+LM + + +K++DI+ +V D+ + K ++ D L+EI R I +L Sbjct: 236 RELPHELMESFKSTLDEVKYSDILVVVSDASDMAIKDKYSVVDRTLREIGAGEIRRIHVL 295 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLNYLC---------S 184 NKID ERL E +E +F MVSA + + + +LN + Sbjct: 296 NKIDLCTNERLAE----------LEGSFPDSVMVSALRSYNIEGILNEITRKLFGEKSRR 345 Query: 185 TLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKW 234 TL L P + S+ F + E+ E L + + SS + E+ Sbjct: 346 TLRLTPA-----EFSNFMRFRNSVEVLSESFDRELIEIVYLSSDEINERL 390 >gi|298243558|ref|ZP_06967365.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963] gi|297556612|gb|EFH90476.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963] Length = 474 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 19/171 (11%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD 85 A++G N GKS+L+N + + +IVT TTR V I + + + +DT GI +D Sbjct: 227 AIIGRPNVGKSSLLNALLRIERAIVTPIAGTTRDTVEEIANLRGIPLHLIDTAGITPTQD 286 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDS-----------HRELKVNIHDLLKEIAKRSSRLI 134 +L ++ S + AD++ V D +EL+ + +E ++ Sbjct: 287 PVEQLGVQRSRLAAETADVILHVFDGATALTEQDWQVAQELRAMGYGEKREGQAARRPVV 346 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMV--SATKGHGCDDVLNYLC 183 +++NK DC E++++ A I + F + +V S G G + + N L Sbjct: 347 VVINKADC---EQVIDVAAIQS---FWQDASLVQTSTLTGEGLEALENTLA 391 >gi|255646762|gb|ACU23854.1| unknown [Glycine max] Length = 101 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 50/85 (58%) Query: 217 LHLHKEIPYSSCVVTEKWEEKKDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKK 276 + EIPY+ V ++ + + I+ I VE+ +QK I++G+ G+ +K ++ A+ Sbjct: 1 MQYRNEIPYACQVNVVNYKARPNAKEYIQVEILVEKNTQKIILIGREGKALKLLATAARL 60 Query: 277 EIAEILEQPVHLILFVKVQKDWGHD 301 ++ + L++ V+L + VKV+ +W D Sbjct: 61 DVEDFLQKKVYLEIEVKVRANWRQD 85 >gi|15669516|ref|NP_248326.1| GTP1/Obg family GTP-binding protein [Methanocaldococcus jannaschii DSM 2661] gi|38503291|sp|Q58722|Y1326_METJA RecName: Full=Uncharacterized GTP-binding protein MJ1326 gi|1591967|gb|AAB99336.1| GTP-binding protein, member of GTP1/OBG-family [Methanocaldococcus jannaschii DSM 2661] Length = 391 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S A VG + GKSTL+N+ AK + + TT +IV GI+ K ++I LD PG Sbjct: 82 SGDATAAFVGFPSVGKSTLLNKLTNAKSEVGAYAF-TTLTIVPGILEYKGAKIQLLDAPG 140 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 I S + S ++ AD++ L VD Sbjct: 141 IIVGASSGKGRGTEV-LSAVRSADLILLTVD 170 >gi|223994975|ref|XP_002287171.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976287|gb|EED94614.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 460 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 10/129 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-------IVFLDT 77 VA++G N GKS+L+N G+ +IV+ TTR + I+ S F+DT Sbjct: 184 VAIIGRPNVGKSSLINTIFGSNRAIVSDVAGTTRDSIDAIMERPSSDPEGLPTIYRFVDT 243 Query: 78 PGIFN-AKDSYHK--LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 GI K + M+ + I+ AD+V LV+D+ + L ++I+ + Sbjct: 244 AGIRRKGKIEFGPEFFMVNRALRAIRRADVVLLVLDATAGVTEQDRVLAQKISDDGRACV 303 Query: 135 LILNKIDCV 143 ++ NK D V Sbjct: 304 ILCNKWDAV 312 >gi|170758584|ref|YP_001788400.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169405573|gb|ACA53984.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 594 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 25/209 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQ---------TTRSIVRGIVSEKESQIVFL 75 V+LVG TNAGKSTL N+ ++ +K + T + R I I Sbjct: 364 VSLVGYTNAGKSTLRNKLCDTGIASAQNKEKVFEADMLFATLDTTTRAISLPNNEIITLT 423 Query: 76 DTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD---SHRELKVN-IHDLLKEIAKR 129 DT G + H+L+ + + + ++D++ V+D E +++ ++++LKE+ Sbjct: 424 DTVGF--VRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDAVNNVLKELGTE 481 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL- 188 + +IL+ NKID V E+L +K EK +SA G +D+L + TLP Sbjct: 482 NKPIILVFNKIDKVSMEKL---NYFRDKFKD-EKVIEISARLGINLEDLLKIIEKTLPYK 537 Query: 189 ---APWVYSADQISDLPMFHFTAEITREK 214 ++ D+ + H ++I E+ Sbjct: 538 LSEVEYIIPYDKQKTVAFLHRNSKIIEEE 566 >gi|167463165|ref|ZP_02328254.1| GTP-binding protein, HSR1-related [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381934|ref|ZP_08055884.1| protease modulator-like protein with GTP-binding domain [Paenibacillus larvae subsp. larvae B-3650] gi|321154074|gb|EFX46402.1| protease modulator-like protein with GTP-binding domain [Paenibacillus larvae subsp. larvae B-3650] Length = 425 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%) Query: 21 RSGCV--ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +SG V ALVG TNAGKSTL+ A V + T R + IV DT Sbjct: 200 KSGVVQVALVGYTNAGKSTLLRELTQADVYVENQLFATLDPTSRTMKLPSGKDIVLTDTV 259 Query: 79 GIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSR 132 G ++ H L+ R + AD++ VVDS +++ + ++L+E+ Sbjct: 260 GFI--QNLPHDLIAVFRATLEEANEADLILHVVDSSSKMRQEQMRVVDEVLEELGASGKP 317 Query: 133 LILILNKIDCVKPER 147 I + NKID + PE+ Sbjct: 318 AITVFNKIDLI-PEK 331 >gi|57641911|ref|YP_184389.1| HflX-related GTP-binding protein [Thermococcus kodakarensis KOD1] gi|57160235|dbj|BAD86165.1| HflX-related GTP-binding protein [Thermococcus kodakarensis KOD1] Length = 442 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 85/195 (43%), Gaps = 36/195 (18%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRF----VGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 ++N+ VAL G TNAGKSTL+N V AK + T TTR G +I Sbjct: 180 RENAGFVLVALAGYTNAGKSTLLNALADENVEAKNQMFTTLDTTTRRFRLGT-----KRI 234 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-------HRELKVNIHDLLKE 125 + DT G + + + I ADIV LV+DS R+ ++ +L+E Sbjct: 235 LATDTVGFIDGLPPFIVEAFHSTLEEIVKADIVLLVLDSSEPWGEIRRKFLASLQ-VLRE 293 Query: 126 IAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFI-----------EKTFMVSATKGHG 174 + +I+ LNKID L+E+A+ K+ I E +SA +G Sbjct: 294 LKALEKPIIVALNKID------LIEEADAEEKVRLIWELARERGISLEDVVKISAREGRL 347 Query: 175 CD--DVLNYLCSTLP 187 + D LN + LP Sbjct: 348 EELMDALNRVVLKLP 362 >gi|54310429|ref|YP_131449.1| putative GTPase HflX [Photobacterium profundum SS9] gi|46914870|emb|CAG21647.1| putative GTP-binding protein HflX [Photobacterium profundum SS9] Length = 429 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 10/167 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++LVG TNAGKSTL NR A V + T +R I + DT G Sbjct: 200 ISLVGYTNAGKSTLFNRITDAGVYVADQLFATLDPTLRKIDVADVGTAILADTVGFIRHL 259 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + A ++ VVD+ RE +H +L EI ++++NKI Sbjct: 260 PHDLVAAFKATLKETQEATLLLHVVDASDERFRENMDAVHLVLDEIDAGDVPRLIVMNKI 319 Query: 141 DCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 DC+ E +E+ E + + VSA +G G D + L L Sbjct: 320 DCLDGAEPRIERDEDG-----LPRCVWVSAMEGIGIDLLFQALTERL 361 >gi|313678189|ref|YP_004055929.1| tRNA modification GTPase TrmE [Mycoplasma bovis PG45] gi|312950578|gb|ADR25173.1| tRNA modification GTPase TrmE [Mycoplasma bovis PG45] Length = 445 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 45/86 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+++N + +IVT TTR IV + K F+DT GI K Sbjct: 221 IAILGKPNVGKSSILNSILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFVDTAGIRETK 280 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 + K+ I S+ I AD+V + D Sbjct: 281 EKIEKIGIDKSFEQIDKADVVLHIYD 306 >gi|254369245|ref|ZP_04985257.1| protease [Francisella tularensis subsp. holarctica FSC022] gi|157122195|gb|EDO66335.1| protease [Francisella tularensis subsp. holarctica FSC022] Length = 435 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 26/205 (12%) Query: 12 HKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 H+D + + + ++ VG TNAGKSTL N+ A V T +R ++ K Sbjct: 188 HRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFATLDPTLRKVIVPK 247 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA---DIVCLVVD----SHRELKVNIHD 121 +I+F DT G K+ H L + +T++ A D++ V+D H+ + Sbjct: 248 LGEIIFSDTVGFI--KNLPHNL-VEAFHATLEEAIESDLLVHVIDYADEDHKSYIEQVEK 304 Query: 122 LLKEIAKRSSRLILILNKID---CVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDD 177 +L EI I + NKID +KP + LE ++ + + + ++ SA G G + Sbjct: 305 VLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSS----VVSRVYL-SAQNGDGLVE 359 Query: 178 VLNYLCSTLPLAPWVYSADQISDLP 202 L +T W+ +Q DLP Sbjct: 360 FYQAL-ATFFNKTWI---NQTLDLP 380 >gi|71892302|ref|YP_278036.1| GTP-binding protein EngA [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796408|gb|AAZ41159.1| putative GTP-binding protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 471 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 16/169 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI--FN 82 + L+G N GKSTL N+ +++++ TR G K+ + + +DT GI F Sbjct: 5 ITLIGQKNVGKSTLFNKLTHTHDALISNYPGLTRDRQYGYFQCKQFKSILIDTGGIDKFC 64 Query: 83 AKDSYHKLMIRLSWSTI---KHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILI 136 + + + +++ TI + ADI+ V+D + +I + LK+I K + ++ Sbjct: 65 STKT-ENIQSYVTYQTILAMQEADILLFVMDRQSVGTSINNDIFNFLKKIKK---NIFVV 120 Query: 137 LNKIDCVKPERLLEQAEIANKLVF-IEKTFMVSATKGHGCDDVLNYLCS 184 +NKID + P + I + F I+ +SA GHG D++L + S Sbjct: 121 INKIDNI-PHHI--HTMIWDYCSFGIKNIIFISAIHGHGIDNLLEKISS 166 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 29 GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK---D 85 G N+GKST VN +G I TTR+ + + + + + +DT G+ K + Sbjct: 211 GRPNSGKSTFVNHILGETRMITCSTPGTTRNCIHMPIMYDKQKYILIDTAGVQKNKRIDN 270 Query: 86 SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 ++ I ++ IK A ++ + D++ + LL+ I LI+++NK D + P Sbjct: 271 VAEQISILKTFQIIKTAHVLLFIGDANLGISDQDLHLLQFILNYGKALIIVINKWDLISP 330 Query: 146 E-RLLEQAEIANKLVFIEKT--FMVSATKGHG 174 + R + + K+ FI T +SA G+G Sbjct: 331 DLRNTTKKNLYEKINFINFTQIHFISALYGNG 362 >gi|325294346|ref|YP_004280860.1| small GTP-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064794|gb|ADY72801.1| small GTP-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 430 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV-RGIVSEKESQIVFLDTPGIFNA 83 + + G TN GKS+ +N G +VSIV+ TT +V + + ++FLDT GI + Sbjct: 12 IGVFGRTNVGKSSFINLVTGQEVSIVSDIPGTTTDVVEKAMEILPIGPVLFLDTAGI-DD 70 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K +R ++ ++ D+ L+++ + + L+K ++ ++++NKID Sbjct: 71 ETLLGKERVRKAFEVLRRCDVALLMLEPNVFTEFE-SSLIKLFEEKKIPYVVVINKIDVQ 129 Query: 144 KPER 147 KPE+ Sbjct: 130 KPEK 133 >gi|270291293|ref|ZP_06197515.1| ribosome-associated GTPase EngA [Pediococcus acidilactici 7_4] gi|304385042|ref|ZP_07367388.1| ribosome-associated GTPase EngA [Pediococcus acidilactici DSM 20284] gi|270280139|gb|EFA25975.1| ribosome-associated GTPase EngA [Pediococcus acidilactici 7_4] gi|304329236|gb|EFL96456.1| ribosome-associated GTPase EngA [Pediococcus acidilactici DSM 20284] Length = 435 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + + +DT GI Sbjct: 5 TVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTHSEWLGRKFNLIDTGGIQIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 ++ + + + + I AD++ +V S RE + + + +I ++ + +IL +NK+D Sbjct: 65 EEPFLEEIRDQAELAINEADVIIFIV-SVREGVSDADEAVAKILYKADKPVILAVNKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE L Q + + +S + G G D+L+ + + P Sbjct: 123 -NPE--LRQDIYDFYSLGFGDPYPLSGSHGLGLGDLLDAVIANFP 164 Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust. Identities = 28/131 (21%), Positives = 63/131 (48%), Gaps = 3/131 (2%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q++ + +L+G N GKS+LVN +G + IV+ TTR + + + V +D Sbjct: 169 QEDDEAIRFSLIGRPNVGKSSLVNAILGEQRVIVSDIAGTTRDAIDTRFTSNGDEFVMVD 228 Query: 77 TPGIFNAKDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ Y + + + I ++++V +V+++ ++ + + + Sbjct: 229 TAGMRKKGKIYENTERYSVMRAMKAIDNSNVVLVVLNAEEGIREQDKRIAGYAHEAGRAI 288 Query: 134 ILILNKIDCVK 144 ++++NK D +K Sbjct: 289 VIVVNKWDKLK 299 >gi|116751059|ref|YP_847746.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB] gi|261277760|sp|A0LPF9|OBG_SYNFM RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|116700123|gb|ABK19311.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 348 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 13/187 (6%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E ++ V + V LVG NAGKSTL++ A+ I + T + G+V E Sbjct: 147 GEDRELVLELKLMADVGLVGLPNAGKSTLISVVSAARPRIADYPFTTLIPCL-GVVRHGE 205 Query: 70 S-QIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLK- 124 + V D PG+ L IR I+ I+ +VD + E + + L++ Sbjct: 206 APPFVMADIPGLIEGAHDGAGLGIRF-LRHIERTRILAHLVDISQLSPEEPLRPYRLIES 264 Query: 125 EIAKRSSRL-----ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 E+A S+RL +++LNK+D V PER +A ++ F VSA G ++L Sbjct: 265 ELASYSARLGEKKRVIVLNKVDLV-PERDRLEALVSRYEQLGHPVFPVSARTKEGLGELL 323 Query: 180 NYLCSTL 186 + L L Sbjct: 324 SALVRIL 330 >gi|114704562|ref|ZP_01437470.1| GTP binding protein-like [Fulvimarina pelagi HTCC2506] gi|114539347|gb|EAU42467.1| GTP binding protein-like [Fulvimarina pelagi HTCC2506] Length = 459 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 7/163 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL NR GA V T +R ++I+F DT G + Sbjct: 224 IVALVGYTNAGKSTLFNRMTGADVFAQNLLFATLDPTMRRTTLAHGTEILFSDTVGFISE 283 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV----NIHDLLKEI---AKRSSRLILI 136 ++ R + + ADI+ + D + ++ +L+++ A + ++ + Sbjct: 284 LPTHLVAAFRATLEEVIEADIILHIRDVSDPDSLAQAEDVRQILRDLEIDADDTDHVVEV 343 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVL 179 NKID V +A E+ +VSA G G + +L Sbjct: 344 WNKIDRVDGSERERIETLAANEAEKERPHVVSAWTGEGIEALL 386 >gi|110638429|ref|YP_678638.1| tRNA modification GTPase TrmE [Cytophaga hutchinsonii ATCC 33406] gi|123354534|sp|Q11TG8|MNME_CYTH3 RecName: Full=tRNA modification GTPase mnmE gi|110281110|gb|ABG59296.1| tRNA modification GTPase trmE [Cytophaga hutchinsonii ATCC 33406] Length = 460 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 8/119 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 ++G NAGKSTL+N + + +IV+ TTR + ++ + F+DT G+ A D+ Sbjct: 229 IIGKPNAGKSTLLNTLLNEEKAIVSEIAGTTRDFIEDELNVEGITFRFIDTAGLREATDA 288 Query: 87 YHKLMIRLSWSTIKHADIVCLVVD----SHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + ++ + + A +V + D S REL I D L+E+ + +++ NKID Sbjct: 289 IEAMGVKRTREKMTQASLVIYLFDVKSTSEREL---IRD-LEELKALKAPFLVVGNKID 343 >gi|304392401|ref|ZP_07374342.1| ribosome biogenesis GTP-binding protein YsxC [Ahrensia sp. R2A130] gi|303295505|gb|EFL89864.1| ribosome biogenesis GTP-binding protein YsxC [Ahrensia sp. R2A130] Length = 233 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 21/172 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-----IVFLDTPG 79 +A G +N GKS+L+N K T + + E + I +D PG Sbjct: 55 IAFAGRSNVGKSSLINALTATKGLARTSNTPGRTQELNFFTPDAEFEDGLPPIALVDMPG 114 Query: 80 IFNAK------DSYHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSS 131 AK D++ KL+ +T+K V +++D+ +K N ++ + K + Sbjct: 115 YGFAKAPKDAVDAWTKLIFSYLRGRTTLKR---VYVLIDARHGVKKNDEEVFDLLDKAAV 171 Query: 132 RLILILNKIDCVKPERLLE-QAEIANKLVFIEKTF----MVSATKGHGCDDV 178 L+L K D +KP L++ QAE K+ F S+ KGHG DD+ Sbjct: 172 SYQLVLTKADKIKPPALVKLQAETLEKIAKRAAAFPFIVSTSSEKGHGVDDL 223 >gi|268326250|emb|CBH39838.1| conserved hypothetical protein, GTPase family [uncultured archaeon] Length = 366 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 10/127 (7%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 + K + S + LVG + GKSTL+N G + ++ TT ++ G + K Sbjct: 51 GKGKGYFVKKSGHATIVLVGFPSVGKSTLLNSLTGTSAEVAAYEF-TTLYVIPGTLIYKG 109 Query: 70 SQIVFLDTPGIFN---AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 +Q+ FLD PG+ A + K +I S +++AD++ ++VD ++ + +I LLKE+ Sbjct: 110 AQLQFLDVPGLIQGAAAGRGHGKEVI----SVMRNADLILILVDIFQQQQYDI--LLKEL 163 Query: 127 AKRSSRL 133 R+ Sbjct: 164 YDAGIRI 170 >gi|269137750|ref|YP_003294450.1| putative GTP-binding protein [Edwardsiella tarda EIB202] gi|267983410|gb|ACY83239.1| putative GTP-binding protein [Edwardsiella tarda EIB202] gi|304557807|gb|ADM40471.1| GTP-binding protein Obg [Edwardsiella tarda FL6-60] Length = 392 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 21/175 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V ++G NAGKST + AK + + T + + + E V D PG+ Sbjct: 162 VGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDSEKSFVVADIPGLIEGA 221 Query: 85 DSYHKLMIRLSWSTIKHAD-------IVCLVVDSHRELKVNIHDLLKEIAKRSSRLI--- 134 L IR ++H + ++ L + N ++ E+ K S +L Sbjct: 222 SEGAGLGIRF----LRHLERCRVLLHLIDLAPIDESDPVENARVIIGELEKYSEKLAQKP 277 Query: 135 --LILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHG----CDDVLNYL 182 L+ NK D + PE +A+ IA+ L + + +++SA G C DV+N+L Sbjct: 278 RWLVFNKTDLLAPEEAKARAQAIADALGWEGEHYLISAANREGVNALCWDVMNFL 332 >gi|289191881|ref|YP_003457822.1| small GTP-binding protein [Methanocaldococcus sp. FS406-22] gi|288938331|gb|ADC69086.1| small GTP-binding protein [Methanocaldococcus sp. FS406-22] Length = 367 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S A VG + GKSTL+N+ AK + + TT +IV G++ K ++I LD PG Sbjct: 58 SGDATAAFVGFPSVGKSTLLNKLTNAKSEVGAYAF-TTLTIVPGVMEHKGAKIQLLDAPG 116 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVD 110 I S + S ++ AD++ L VD Sbjct: 117 IIVGASSGKGRGTEV-LSAVRSADLILLTVD 146 >gi|260583467|ref|ZP_05851215.1| ribosome-associated GTPase EngA [Granulicatella elegans ATCC 700633] gi|260158093|gb|EEW93161.1| ribosome-associated GTPase EngA [Granulicatella elegans ATCC 700633] Length = 437 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 9 FNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 F EH D +D++ + +G N GKS+LVN +G + IV++ TTR + +++ Sbjct: 163 FPEHDD-QEDDTDVIRFSFIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAIDTSFTDE 221 Query: 69 ESQIV-FLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 E I +DT GI +S K + + I+ +DIVC+V+++ ++ + Sbjct: 222 EGTIFKMIDTAGIRKKGRVFESTEKYSVLRALRAIERSDIVCVVLNAEEGIQEQDKKIAG 281 Query: 125 EIAKRSSRLILILNKIDCVK 144 + +I+++NK D ++ Sbjct: 282 YAHEAGKGVIILVNKWDTLE 301 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 16/170 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE---SQIVFLDTPGI 80 +A+VG N GKST+ NR VG ++SIV TR I SE E Q +DT GI Sbjct: 5 VIAIVGRPNVGKSTIFNRVVGERISIVEDIAGVTRD---RIYSEGEWLGHQFHIIDTGGI 61 Query: 81 FNAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + D IR+ ++ AD++ + + + K + + + ++L +NK Sbjct: 62 -DITDEPFMSNIRMQAEIAMEEADVIIFLTSVKEGVTSTDEHIAKMLYRTNKPVLLAVNK 120 Query: 140 IDCVKPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D PE +++I + L F E F +S + G G D+L+ P Sbjct: 121 VD--NPEL---RSDIFDFYALGFGEP-FPISGSHGLGLGDLLDAAVKAFP 164 >gi|212704395|ref|ZP_03312523.1| hypothetical protein DESPIG_02450 [Desulfovibrio piger ATCC 29098] gi|212672116|gb|EEB32599.1| hypothetical protein DESPIG_02450 [Desulfovibrio piger ATCC 29098] Length = 544 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 23/195 (11%) Query: 5 EITFFNEHKDFVQDN-SRSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIV 61 E+ + F + +R G ALVG TNAGKSTL+N ++V T Sbjct: 342 ELDQLRRQRAFTRSRRARRGIPMAALVGYTNAGKSTLLNNLTRSEVLAENKLFATLDPTT 401 Query: 62 RGIVSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVD-SHRELK-- 116 R + E +I+ DT G ++ +LM R + ++ AD++ V D SH +L Sbjct: 402 RRLRFPAEREIILADTVGFI--RNLPKELMDAFRATLEELESADLLVHVADASHPDLLQQ 459 Query: 117 -VNIHDLLKEIAKRSSRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHG 174 ++ +L+E+ + IL+LNK D + P R AE+A+ +SA G G Sbjct: 460 ITSVETILEELELQHMPRILLLNKWDLLDVPAR----AELADA---FPHAIPISARTGDG 512 Query: 175 CDDVL----NYLCST 185 +L N L ST Sbjct: 513 LKRLLEVLENMLLST 527 >gi|15604520|ref|NP_221038.1| GTP-binding protein EngA [Rickettsia prowazekii str. Madrid E] gi|8928120|sp|Q9ZCP6|DER_RICPR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3861214|emb|CAA15114.1| unknown [Rickettsia prowazekii] gi|292572309|gb|ADE30224.1| GTP-binding protein [Rickettsia prowazekii Rp22] Length = 447 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 + LVG N GKSTL NR K +IV TR R K FL DTPG+ Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRD--RKYTDGKIGSFEFLLIDTPGLEE 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ + ++ + I AD++C +VD + + L + K + IL++NK C Sbjct: 64 NPDNMGERLMGQTTQAILEADLICFMVDGKSGVLPDDKLLSNFVRKYNKHCILVVNK--C 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 E+ + + KL F + ++SA G G D+ + + S L Sbjct: 122 ---EKAFDFDKEYYKLGF-DSIVIISAEHGIGLIDLYDAIISKL 161 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%) Query: 16 VQDNSRSGCVALV--GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 + D R C+ +V G NAGKST +N + + + + TR + K + I Sbjct: 171 IADPFRGDCLQIVVSGRPNAGKSTFINAIINDERLLTGPEAGITRESIEVDWQYKNTHIK 230 Query: 74 FLDTPGIFNAKD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ S KL + ++IK A+ V L++D+ +K ++ I Sbjct: 231 LIDTAGLRKKSTITASLEKLSTSDTINSIKFANTVILMIDALAHVKQQDFNIASHIVNEG 290 Query: 131 SRLILILNKIDCVK 144 +I+++NK D VK Sbjct: 291 RSIIIVVNKWDLVK 304 >gi|269219563|ref|ZP_06163417.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 848 str. F0332] gi|269210805|gb|EEZ77145.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 848 str. F0332] Length = 499 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 11/166 (6%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG TNAGKS+L+NR GA V + T VR + + DT G + Sbjct: 276 VVGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRTQTASGREYTLADTVGFVRQLPT 335 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEI-AKRSSRLILILNKID 141 R + AD++ VVD+ V + +L E+ R +R I++L+K D Sbjct: 336 QLVEAFRSTLEEAGEADVLVHVVDASHHDPVGQVKAVRKVLAEVPGTREAREIVVLSKSD 395 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P ++A + VS G G D++ + LP Sbjct: 396 LADP------VDLAALRSRFPGSIAVSCLTGEGVDELRAAIEEALP 435 >gi|254509743|ref|ZP_05121810.1| GTP-binding proten HflX [Rhodobacteraceae bacterium KLH11] gi|221533454|gb|EEE36442.1| GTP-binding proten HflX [Rhodobacteraceae bacterium KLH11] Length = 423 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 8/168 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG TNAGKSTL N GA+V T +R + + +++ DT G + Sbjct: 204 IVALVGYTNAGKSTLFNSLTGAEVMAKDMLFATLDPTMRRVELQDGPEVILSDTVGFISN 263 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIAKRSSRLIL-ILN 138 + R + + AD+V V D SH + + D +L + R L + N Sbjct: 264 LPTELVAAFRATLEEVLGADLVVHVRDISHEDSEAQAQDVETILASLGVDDDRPRLEVWN 323 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID + E +A +A + + F +SA G G +L + + L Sbjct: 324 KIDLLGAE--AREATLA-RAERDPQVFAISAVTGEGVAPLLTEIATKL 368 >gi|292806610|gb|ADE42435.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 K + I+ L+ + +D++ VVD S +LK L +E+ K + L++ Sbjct: 67 KGALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 NKID K ER + + K+F +S + G +++ + L L Sbjct: 122 NKIDNDKEKERAYAFSSFG-----MPKSFNISVSHNRGISALIDAVLRVLNL 168 >gi|323526574|ref|YP_004228727.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1001] gi|323383576|gb|ADX55667.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1001] Length = 445 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR ++ ++V TR G E + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 AKD M R + ++ +DIV +VD L + + K + L++NK + Sbjct: 64 AKDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKVIADYLRKTGRPIFLVVNKAEG 123 Query: 143 VK 144 +K Sbjct: 124 MK 125 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 13/176 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKSTL+N VG + I TTR + + +DT G+ Sbjct: 182 IAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAGLRRRG 241 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + +I A++V L++D+ +++ + + ++ L++ +NK D Sbjct: 242 KVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDAHIAGFVVEQGRALVVGVNKWD 301 Query: 142 CVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLCSTLP 187 + R +A++ KL F++ K +SA + G DD S LP Sbjct: 302 GLDSHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYAAAMSKLP 357 >gi|320011615|gb|ADW06465.1| ribosome-associated GTPase EngA [Streptomyces flavogriseus ATCC 33331] Length = 489 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG N GKSTLVNR +G + ++V K TR V + +DT G Sbjct: 53 VLAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQD 112 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + I AD V VVD+ +++ + K ++L NK+D Sbjct: 113 VLGLDASVAAQAEYAISTADAVVFVVDATVGATDTDEAVVRLLRKAKKPVVLCANKVDG- 171 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 + E A + + + VS+ G G D+L+ + LP AP Sbjct: 172 ---QSGEADATALWSLGLGEPHPVSSLHGRGTGDMLDAVLEALPEAP 215 Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN-- 82 +AL+G N GKS+L+N+ G +V TTR V +++ F+DT GI Sbjct: 229 IALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWKFIDTAGIRRKV 288 Query: 83 ----AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 D Y L + + A I ++DS + V ++ + +++ N Sbjct: 289 HLQEGADYYASLRTAAAVEKAEVAVI---LIDSSESISVQDQRIVTMAVEAGRAVVIAFN 345 Query: 139 KIDCVKPER 147 K D + ER Sbjct: 346 KWDTLDEER 354 >gi|328950860|ref|YP_004368195.1| tRNA modification GTPase mnmE [Marinithermus hydrothermalis DSM 14884] gi|328451184|gb|AEB12085.1| tRNA modification GTPase mnmE [Marinithermus hydrothermalis DSM 14884] Length = 437 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + LVGA NAGKS+L+N +G +IVT TTR + + ++ +DT G+ + Sbjct: 223 ITLVGAPNAGKSSLLNALLGYDRAIVTDIPGTTRDYLEAPLEIGGVPVIAVDTAGVRETE 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 D+ + + + + AD++ + D Sbjct: 283 DAVERAGVERALELAREADLILFLAD 308 >gi|311109664|ref|YP_003982517.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans A8] gi|310764353|gb|ADP19802.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans A8] Length = 450 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 21/170 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+N G ++IVT TTR V + + +DT G+ + Sbjct: 222 VVLAGQPNVGKSSLLNALAGDDIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRETE 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + I +W I+ AD++ + D+ + EL I L + ++ + NK+D Sbjct: 282 DTVESIGIARTWQEIERADVILHLQDATQPGDELDAQITARLPP----RTPVLKVFNKVD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPW 191 ++ + +SA +G G D++ L L +A W Sbjct: 338 L-----------LSTPFAAGPQELGISAKRGAGLDELRAEL---LRIAGW 373 >gi|283955809|ref|ZP_06373300.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792764|gb|EFC31542.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni 1336] Length = 460 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 7/164 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L+G N GKS+L NR +++I + TTR + + + + +D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIHIHSKKAMLIDSGGL-DE 61 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K + + + K +DI+ +VD + K + L++NK+D Sbjct: 62 SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNK 121 Query: 144 KPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K E E+A E AN +++ F +S T G D++ +L L Sbjct: 122 KDE---ERAWEFAN--FGVKEIFNLSVTHNVGLDELYEWLGKFL 160 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L+N V + S+V+ TT V V K+ I F+DT GI Sbjct: 198 VGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRG 257 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + + + + H+ I LV+D+H EL I L +AK +I++LNK Sbjct: 258 KIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGL---VAKHYLGVIIVLNK 314 Query: 140 ID 141 D Sbjct: 315 WD 316 >gi|297588533|ref|ZP_06947176.1| ribosome-associated GTPase EngA [Finegoldia magna ATCC 53516] gi|297573906|gb|EFH92627.1| ribosome-associated GTPase EngA [Finegoldia magna ATCC 53516] Length = 438 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L+G N GKS+L+N + + IVT TTR + ++ K ++ +F+DT G+ + Sbjct: 179 VCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYIFIDTAGLRKRR 238 Query: 85 D---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + + + S I +DI L++D+ + +L + +I+++NK D Sbjct: 239 KIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSEQDTKILGYAHDQGKAMIILVNKWD 298 Query: 142 CVKPE 146 V+ + Sbjct: 299 LVEKQ 303 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 15/182 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-N 82 VA+VG N GKSTL N+ + +++I TR + + +DT G+ Sbjct: 5 VVAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPK 64 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNK 139 + + K + + + I+ AD++ +VD + + + + D+L+ K +IL++NK Sbjct: 65 SNEIITKNIKKQTELAIETADVILFMVDGKQGITPIDMEVADMLRRTKK---SVILVVNK 121 Query: 140 IDCVKPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 ID +K +Q + + L F E F +SA+ G D+L + S S D Sbjct: 122 IDHIK-----QQDNVYDFYNLGFYE-IFPISASNSMGLGDLLEAVVSKFDDNSNTESDDD 175 Query: 198 IS 199 I+ Sbjct: 176 IT 177 >gi|119357805|ref|YP_912449.1| GTP-binding protein EngA [Chlorobium phaeobacteroides DSM 266] gi|166224325|sp|A1BHZ8|DER_CHLPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119355154|gb|ABL66025.1| small GTP-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 437 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 8/167 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIV--THKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 +A+VG N GKS L NR + K +IV T V R I G K Q + +DT G Sbjct: 5 IAIVGRPNVGKSMLFNRILREKSAIVDSTPGVTRDRHISPGEWQGK--QFLLMDTGGYCP 62 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL-LKEIAKRSSRLILILNKID 141 D M+ + I+ ADI+ + D L + DL + ++ +R+ + I ++ Sbjct: 63 EGDVISMAMLEQTLMAIRDADIILFLADVRSGLTYD--DLEISKLLQRTFQHKQIFFAVN 120 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 V+ +L AE F K + VSA G G ++L+ + +LP+ Sbjct: 121 KVETPQLSIDAESFVSTGFT-KPYFVSARDGSGVAELLDDMLDSLPV 166 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 7/127 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 +A+VG N GKS+ VN +GA IV+ TTR + + K+ V +DT G+ Sbjct: 180 LAVVGRPNVGKSSFVNALLGANRLIVSDIPGTTRDAIDSRFTRKKQDFVLIDTAGLRKRT 239 Query: 81 -FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 +A Y+ + + I+ D+ +++D+ ++ ++ +R ++L++NK Sbjct: 240 KIDAGIEYYSSL--RTDKAIERCDVALVMIDARTGIENQDMKIINMAVERKRGVLLLINK 297 Query: 140 IDCVKPE 146 D V+ + Sbjct: 298 WDLVEKD 304 >gi|323490387|ref|ZP_08095602.1| hypothetical protein GPDM_13581 [Planococcus donghaensis MPA1U2] gi|323396057|gb|EGA88888.1| hypothetical protein GPDM_13581 [Planococcus donghaensis MPA1U2] Length = 337 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 14/126 (11%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI----VRGIVSEKESQIVFLDTPG 79 ++L+G NAGKST VN+ +G ++ T S+ +RG+ I F+DTPG Sbjct: 33 LISLIGEVNAGKSTTVNKIIGEDIASTNPMPGETVSVDPYNIRGL-----ENIKFMDTPG 87 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSRLILILN 138 + + D K + ++ +D+V +++ + + + EI K + ++++LN Sbjct: 88 LNDPNDENPKKTLEF----VQKSDVVLFFLNAAGTVFSESEKEKFNEIEKHNKDILIVLN 143 Query: 139 KIDCVK 144 KID + Sbjct: 144 KIDAAE 149 >gi|253577867|ref|ZP_04855139.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850185|gb|EES78143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 434 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 33/192 (17%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V LVG N GKST ++R A+ I + TT S G+V + V D PG+ Sbjct: 164 VGLVGFPNVGKSTFLSRVTNAQPKIANYHF-TTLSPNLGVVDTENGGFVIADIPGLIEGA 222 Query: 85 DSYHKLMIRLSWSTIKHAD----IVCLVVDSHRELKVNIHDLLK----------EIAKRS 130 + L ++H + I+ +V + E + I D+ K EIA R Sbjct: 223 SE----GVGLGHEFLRHIERTRVIIHIVDAASTEGRDPIDDIYKINKELEAYNPEIAARP 278 Query: 131 SRLILILNKIDCVKPERLLE------QAEIANKLVFIEKTFMVSATKGHGCDDVLNY--- 181 ++ NKIDC+ E E +AE K + + + +SA G G ++L + Sbjct: 279 Q--VIAANKIDCIYTEDGEESPIDKLKAEFEPKGI---QVYPISAVSGQGVRELLFHVKE 333 Query: 182 LCSTLPLAPWVY 193 L + P P V+ Sbjct: 334 LLDSCPQEPVVF 345 >gi|255659827|ref|ZP_05405236.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544] gi|260847902|gb|EEX67909.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544] Length = 461 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 21 RSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G + A++G N GKS+L+N + + +IVT TTR + + +DT G Sbjct: 220 RDGLLTAIIGKPNVGKSSLLNSLLREERAIVTDVPGTTRDSIEEYADVGGIPLRIIDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + + S +K A ++ + D+ R L ++LK + R + IL+LNK Sbjct: 280 IRATDDVVERIGVEKARSYVKEAALILALFDASRPLDSEDEEILKLVRGRDA--ILLLNK 337 Query: 140 ID 141 D Sbjct: 338 DD 339 >gi|161621425|ref|NP_387444.2| tRNA modification GTPase TrmE [Sinorhizobium meliloti 1021] gi|307302553|ref|ZP_07582310.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti BL225C] gi|307316116|ref|ZP_07595560.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti AK83] gi|205422307|sp|Q92KW1|MNME_RHIME RecName: Full=tRNA modification GTPase mnmE gi|187904240|emb|CAC47917.2| Probable thiophene and furan oxidation protein [Sinorhizobium meliloti 1021] gi|306897956|gb|EFN28698.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti AK83] gi|306903223|gb|EFN33813.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti BL225C] Length = 439 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 17/163 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G NAGKS+L+N ++IVT TTR ++ +S + DT G+ Sbjct: 220 IVIAGEPNAGKSSLLNALARRDIAIVTEVAGTTRDVLSVDLSLAGFSVKLFDTAGLRETD 279 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 + + IR + I AD+V L+ + +++ E+ + +I + K+D Sbjct: 280 ELVEREGIRRARQVIADADLVLLLSEKPGHFRID------EVLPENVPVIRVATKVDRPS 333 Query: 145 PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P A+I +S G G D+L L S LP Sbjct: 334 PSWAPSDADI-----------FLSTRTGEGMADLLTALQSHLP 365 >gi|13476158|ref|NP_107728.1| GTP-binding protein EngA [Mesorhizobium loti MAFF303099] gi|26006731|sp|Q986D9|DER_RHILO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|14026918|dbj|BAB53514.1| GTP-binding protei [Mesorhizobium loti MAFF303099] Length = 479 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIFN 82 VA++G N GKSTL NR VG K+++V TR R + + K + F +DT G + Sbjct: 5 VAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRD--RRVHAAKLYDLHFDVIDTAGFED 62 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 A S +R I AD++ +D+ L + + + K ++L+ NK + Sbjct: 63 AGASTLPGRMRAQTEIAIHEADLIFFTIDAKSGLLPDDRTFAEIVRKSGKPVVLVANKAE 122 Query: 142 CVKPE-RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + +LE E+ + + VSA G G D+ + + + L Sbjct: 123 AKGAQGGMLEAWELG-----LGEPIPVSAEHGQGMPDLRDAVIAAL 163 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 14/179 (7%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 DN++ +A+VG NAGKSTL+N +G + + + TR + ++ DT Sbjct: 203 DNTKPMRIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWHGRRLKLFDT 262 Query: 78 PGIFNAKDSYHKL---MIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ + KL ++ I+ A+IV +V+D+ + + I DL I + Sbjct: 263 AGMRRKARIHEKLEVMSVQDGLRAIRFAEIVIIVLDATIPFEKQDLQIADL---IIREGR 319 Query: 132 RLILILNKIDCVK-PERLL----EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 ++ NK D + P+ LL E+ E V + VSA G G D +++ + T Sbjct: 320 APVIAFNKWDLIDHPQELLAELREKTERLLPQVRGIQAVPVSAETGRGLDKLMDAVLRT 378 >gi|332664864|ref|YP_004447652.1| tRNA modification GTPase mnmE [Haliscomenobacter hydrossis DSM 1100] gi|332333678|gb|AEE50779.1| tRNA modification GTPase mnmE [Haliscomenobacter hydrossis DSM 1100] Length = 458 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 60/116 (51%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 + G NAGKSTL+N + + +IV+ TTR + ++ + Q +DT GI A D+ Sbjct: 223 IAGRPNAGKSTLLNALLNEERAIVSEIAGTTRDTIEESLNIQGIQFRIIDTAGIREASDT 282 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + I+ + ++ + ++ + D + + L ++ +++L+++ NK+D Sbjct: 283 IEAIGIQKTLEKVRQSAVLLYIFDVIKTQPAQLEADLAQLLHPNTQLLVVANKMDL 338 >gi|307594176|ref|YP_003900493.1| GTP-binding proten HflX [Vulcanisaeta distributa DSM 14429] gi|307549377|gb|ADN49442.1| GTP-binding proten HflX [Vulcanisaeta distributa DSM 14429] Length = 375 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 24/178 (13%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VAL G T+AGK+TL NR + + V K T +V+ + DT G Sbjct: 192 VALTGYTSAGKTTLFNR-LARESKYVDGKPFATLDTYSRLVNFNGLNAILTDTIGFI--- 247 Query: 85 DSYHKLMIRLSWSTIK---HADIVCLVV---DSHRELKVNIHDLLK---EIAKRSSRLIL 135 D L+I ++TI +AD+V ++ D +RE LK ++ ++++ Sbjct: 248 DDLPPLLIESFYATIAEVLNADLVLFMMDISDDYREFSRKFMSSLKIFNDLGISRTKILP 307 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTF----MVSATKGHGCDDVLNYLCSTL-PL 188 +LNK+D L++ +I +K+ +E F ++SA G G DD+ + + S L PL Sbjct: 308 VLNKVD------LMDGIDINDKIGLVESEFGNYVLISAKTGVGIDDLRDAVRSRLEPL 359 >gi|300313619|ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation) GTPase [Herbaspirillum seropedicae SmR1] gi|300076404|gb|ADJ65803.1| tRNA modification (thiophene/furan oxidation) GTPase protein [Herbaspirillum seropedicae SmR1] Length = 479 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 27/169 (15%) Query: 21 RSGCVA-LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G A L G N GKS+L+N G+ V+IVT TTR V + + + +DT G Sbjct: 232 RDGLNAVLAGKPNVGKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAG 291 Query: 80 IFNAKDS------YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR- 132 I A D ++ I +W+ + AD++ ++D+ R + E K +SR Sbjct: 292 IREAGDDGSGPDEVERIGIERTWAEVAKADVILHMLDADRGPTL-------EDEKITSRF 344 Query: 133 -----LILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +I I NKID R +A + +K+ ++ SA++G G D Sbjct: 345 PDGVPIIRIWNKID-----RSGHKAAV-DKMPDATHVYL-SASEGQGVD 386 >gi|291288774|ref|YP_003505590.1| ribosome-associated GTPase EngA [Denitrovibrio acetiphilus DSM 12809] gi|290885934|gb|ADD69634.1| ribosome-associated GTPase EngA [Denitrovibrio acetiphilus DSM 12809] Length = 450 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 10/167 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V ++G N GKSTL NR G +++IV TR + + + +DT G Sbjct: 3 TVGIIGRPNVGKSTLFNRLAGKRLAIVDDMPGVTRDRIEFTTEWEGEKFRIVDTAGFDLK 62 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKI 140 ++ K M + +S + AD L+ D L + DLL+ ++ L++NK+ Sbjct: 63 EELVKKEMQQQFYSALDEADYFILMADGTEGVHPLDEIVIDLLRH---KNKPFQLVVNKV 119 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D E + +E +SA+ G D +L+ + +P Sbjct: 120 DSDSKEDFIYDFYRMG----VEHIIAISASHGRNVDMLLDEIIKFIP 162 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 7/150 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + + G N GKS+++N+++G + IVT TTR V + V +DT GI K Sbjct: 177 IVVTGRPNVGKSSMINKWLGEERLIVTPIPGTTRDAVDTFFELDGDKYVLIDTAGIRKKK 236 Query: 85 DSYHKLMIRLSW----STIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 + + + + ++ ADI ++D+ + ++ + + +IL++NK Sbjct: 237 SMFKDKIEKYGYYRWKDAVERADISVCLIDAEEGITERDVKVIADTWEAGRPVILVVNKW 296 Query: 141 DCVKPERLLEQA---EIANKLVFIEKTFMV 167 D ++ + +A ++ KL F+ M+ Sbjct: 297 DLIEDKDDAAKAFLKDVDYKLQFLNNPSMI 326 >gi|29839966|ref|NP_829072.1| GTPase ObgE [Chlamydophila caviae GPIC] gi|81838016|sp|Q824F3|OBG_CHLCV RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|29834313|gb|AAP04950.1| GTP1/OBG family protein [Chlamydophila caviae GPIC] Length = 335 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 18/175 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI----VFLDTPGI 80 + LVG NAGKSTL N +V + + T + ++ G+V +E + D PGI Sbjct: 161 IGLVGFPNAGKSTLFNTLAKTEVKVGAYPFTTLQPVL-GLVPCREKLYQKPWIIADIPGI 219 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVD--------SHRELKVNIHDLL--KEIAKRS 130 L + I+ ++ VVD +L++ + +LL KE Sbjct: 220 IEGAHQNRGLGLDF-LRHIERTRLLLFVVDICGCERSSPEEDLRILMDELLHYKEDLADK 278 Query: 131 SRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 R+I LNKID + P+ E+ E +L E+ M+S G G D+LN L + Sbjct: 279 GRII-ALNKIDDLLPDERQERLENFQRLFPSEQFVMLSGLTGEGV-DLLNSLFTN 331 >gi|328949043|ref|YP_004366380.1| GTP-binding protein engA [Treponema succinifaciens DSM 2489] gi|328449367|gb|AEB15083.1| GTP-binding protein engA [Treponema succinifaciens DSM 2489] Length = 517 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G N GKSTL N + SIV+ TTR +V G I LDT GI Sbjct: 244 IAILGKPNVGKSTLSNALTHTESSIVSDYAGTTRDVVEGSFRYNGHDIQILDTAGIRRKS 303 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K++ + + T+ DI +++D+ L + +R ++ ILNK D Sbjct: 304 KVKENVEYYSVNRAIKTLDECDIAFIMIDAVEGLAEQDKKITGLAFERGRGVVFILNKWD 363 Query: 142 CVK 144 ++ Sbjct: 364 LLE 366 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 7/131 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG---- 79 + + G N GKSTL N K +I TR V G + +DT G Sbjct: 64 LIVIAGRPNVGKSTLFNALTHTKRAITDPTPGVTRDPVEGTCFLSGLPVHLMDTGGYKLT 123 Query: 80 --IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 + + + L++ + S + AD + L++D+ E+ +L+ + S +LI+ + Sbjct: 124 RNLKSRESEMDDLVVEKTVSMFQKADKILLLLDA-TEINSEDEELIHLLRSYSDKLIVAV 182 Query: 138 NKIDCVKPERL 148 NK + K E L Sbjct: 183 NKTEGGKNEHL 193 >gi|291532561|emb|CBL05674.1| tRNA modification GTPase trmE [Megamonas hypermegale ART12/1] Length = 465 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 1/124 (0%) Query: 21 RSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V A++G N GKS+L+N + +IVT TTR + + + +DT G Sbjct: 224 RDGLVTAIIGKPNVGKSSLLNTLLREDRAIVTDIPGTTRDSLEEYANIGGVPLKIIDTAG 283 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D ++ + S S ++ AD++ + D+ +L +++ + + ++L N Sbjct: 284 IRETEDKVEQIGVEKSMSYVQKADLILALFDTSSDLTKEDEEIINLLQGKEGIVLLTKND 343 Query: 140 IDCV 143 + CV Sbjct: 344 LSCV 347 >gi|284044712|ref|YP_003395052.1| GTP-binding proten HflX [Conexibacter woesei DSM 14684] gi|283948933|gb|ADB51677.1| GTP-binding proten HflX [Conexibacter woesei DSM 14684] Length = 450 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 25/172 (14%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSI---VTHKVQ-TTRSIVRGIVSEKESQI 72 +D +R VALVG TNAGKSTL+NR GA+V + + H + TTRS G Sbjct: 215 RDRARLPTVALVGYTNAGKSTLLNRLTGAEVGVRDRLFHTLDPTTRSYKLG-----GRDY 269 Query: 73 VFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHR------ELKVNIHDLLK 124 + DT G + H+L+ + + AD++ VVD+ E+ + +L Sbjct: 270 LLTDTVGFI--RKLPHQLVEAFGATLEETRLADLLLHVVDASAPEEELDEMMRAVDSVLG 327 Query: 125 EIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 +I +LILNK D + + ++ E+ + ++SA G G D Sbjct: 328 DIGAGDQPRLLILNKADALDDD---QRHEVQ---LRHPDGMLISAATGEGLD 373 >gi|254412656|ref|ZP_05026429.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420] gi|196180391|gb|EDX75382.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420] Length = 517 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 13/125 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIV------THKVQTTRSIVRGIVSEKESQIVFLDT 77 V + G ++GK++L+N +G V V T + QT ++GI E QI+ DT Sbjct: 129 LVVIFGTGSSGKTSLINALIGQMVGQVGAPMGTTDQGQTYTLTLKGI----ERQILITDT 184 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL 137 PGI A +L+ AD++ VVD+ +L+ + ++ L+ +A R +L+L Sbjct: 185 PGILEAG-VVGTQREQLARQLATEADLLLFVVDN--DLRQSEYEPLRRLADIGKRSLLVL 241 Query: 138 NKIDC 142 NK D Sbjct: 242 NKTDL 246 >gi|156502317|ref|YP_001428382.1| protease, GTP-binding subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|156252920|gb|ABU61426.1| putative GTPase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 403 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 26/205 (12%) Query: 12 HKDFVQDNSRSG---CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK 68 H+D + + + ++ VG TNAGKSTL N+ A V T +R ++ K Sbjct: 156 HRDLSRSSRKKNNIPTISFVGYTNAGKSTLFNKITNADVLAKDQLFATLDPTLRKVIVPK 215 Query: 69 ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA---DIVCLVVD----SHRELKVNIHD 121 +I+F DT G K+ H L + +T++ A D++ V+D H+ + Sbjct: 216 LGEIIFSDTVGFI--KNLPHNL-VEAFHATLEEAIESDLLVHVIDYADEDHKSYIEQVEK 272 Query: 122 LLKEIAKRSSRLILILNKID---CVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGCDD 177 +L EI I + NKID +KP + LE ++ + + + ++ SA G G + Sbjct: 273 VLSEIGIADKETICVYNKIDKLENIKPSFVPLEDSDSS----VVSRVYL-SAQNGDGLVE 327 Query: 178 VLNYLCSTLPLAPWVYSADQISDLP 202 L +T W+ +Q DLP Sbjct: 328 FYQAL-ATFFNKTWI---NQTLDLP 348 >gi|150392473|ref|YP_001322522.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF] gi|166988167|sp|A6TXE5|MNME_ALKMQ RecName: Full=tRNA modification GTPase mnmE gi|149952335|gb|ABR50863.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF] Length = 461 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 12/137 (8%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N + +IVT TTR + + + + +DT G Sbjct: 221 REGLNTVIVGKPNVGKSSLLNALLKESRAIVTEVPGTTRDAIEEHFNIRGIPLNLIDTAG 280 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLILI 136 I +D K+ + S + AD++ L++D+ REL + I +L+K S + +++ Sbjct: 281 IRETEDIVEKIGVERSKAFFNKADLIILMLDASRELTPEDLQIMELVK-----SKKALIL 335 Query: 137 LNKIDC---VKPERLLE 150 +NK D + +R++E Sbjct: 336 VNKTDLTSQIDYDRIIE 352 >gi|261379855|ref|ZP_05984428.1| ribosome-associated GTPase EngA [Neisseria subflava NJ9703] gi|284797551|gb|EFC52898.1| ribosome-associated GTPase EngA [Neisseria subflava NJ9703] Length = 485 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 8/161 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 A++G N GKSTLVN +G + I TTR + I E+E + +DT G+ Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDTAGVRRRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ A++ LV+D+ +++ + + + L++ +NK D Sbjct: 238 KVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFVLEAGRALVVAVNKWD 297 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + ER + + +I KL F++ K +SA K G D + Sbjct: 298 GISEERREQVKRDINRKLYFLDFAKFHFISALKERGIDGLF 338 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD L Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGL 96 >gi|156103153|ref|XP_001617269.1| GTP-binding protein [Plasmodium vivax SaI-1] gi|148806143|gb|EDL47542.1| GTP-binding protein, putative [Plasmodium vivax] Length = 864 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGI-- 80 ++ +G N GKS+++N+ + IV+ TT + +V K+S ++ +DT GI Sbjct: 563 ISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTVDSIDVLVKIKDSDRIYRLIDTAGIQK 622 Query: 81 ------FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 FN K Y L+ + IK +D+ LV+DS + ++ ++I + + I Sbjct: 623 RKKNVPFNEKTKYEYLLFNRTEKAIKRSDVCILVIDSFNGISSQDINIARKIVQENKSCI 682 Query: 135 LILNKIDCV 143 + NK D + Sbjct: 683 ICCNKWDLI 691 >gi|297585588|ref|YP_003701368.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10] gi|297144045|gb|ADI00803.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10] Length = 458 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 7/159 (4%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+L+N V +IVT TTR ++ V+ + + LDT G Sbjct: 218 REGLSTVIVGRPNVGKSSLLNSLVHENKAIVTEIPGTTRDVIEEYVNIRGVPLKLLDTAG 277 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I +D +L + S + A+++ VV+ + L + +L + + + + I+I+NK Sbjct: 278 IRETEDVVERLGVERSRQVMIDAELILFVVNYNEPLTDSDRELFELVKDQDT--IVIVNK 335 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDV 178 D + ++ E+ N+L S K G D++ Sbjct: 336 RDL---DGQIDMKEV-NQLAGQHPVVTTSLLKDEGVDEL 370 >gi|282881766|ref|ZP_06290424.1| tRNA modification GTPase TrmE [Peptoniphilus lacrimalis 315-B] gi|281298376|gb|EFA90814.1| tRNA modification GTPase TrmE [Peptoniphilus lacrimalis 315-B] Length = 459 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 21 RSGCVALV-GATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G L+ G N GKS+L+N + + +IVT TTR + ++ + DT G Sbjct: 219 REGINTLILGKPNVGKSSLLNGMLKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D K+ ++++ IK AD+V ++ D R + ++L I + + + I+NK Sbjct: 279 IRQTDDEVEKIGVKIARDKIKDADLVIVIFDLSRPFNKDDREILDLIQNKKA--LFIMNK 336 Query: 140 IDC 142 D Sbjct: 337 DDL 339 >gi|213027936|ref|ZP_03342383.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 57 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 32/46 (69%) Query: 258 IMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGHDPK 303 +++G G IKTI +EA+K++ E+ E PVHL L+VKV+ W D + Sbjct: 1 MVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDER 46 >gi|146340695|ref|YP_001205743.1| GTP-binding protein EngA [Bradyrhizobium sp. ORS278] gi|166224310|sp|A4YUE1|DER_BRASO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146193501|emb|CAL77517.1| GTP-binding protein, essential for cell growth [Bradyrhizobium sp. ORS278] Length = 456 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 9/131 (6%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 SR VA+VG NAGKSTL+N +G + + + + TTR + V K DT G Sbjct: 182 SRPIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEVEWKGRGFRIFDTAG 241 Query: 80 IFNA---KDSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRL 133 + ++ KL + + ++ A++V L++D+ E + I DL++ + L Sbjct: 242 LRRRSRIEEKLEKLSVADALRAVRFAEVVVLMLDAQNRFEEQDLRIADLVE---REGRAL 298 Query: 134 ILILNKIDCVK 144 +L +NK D ++ Sbjct: 299 VLAVNKWDLME 309 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 7/166 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKSTL NR VG K+++V TR G + +DT G+ Sbjct: 4 TIAIIGRPNVGKSTLFNRLVGQKLALVDDMPGVTRDRREGEAKLHDLHFTIIDTAGLDEG 63 Query: 84 -KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K S M + + I AD + V+D+ L + A+R+ + +L+L NK + Sbjct: 64 PKGSLTARMQEQTETAIALADALFFVIDARVGL-TPADRAFADFARRADKPVLLLANKSE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + E + + + + +SA G G ++ + L +P Sbjct: 123 G----KHGELGAMESYALGLGDPIQISAEHGEGMGELYDALSKIVP 164 >gi|4467667|emb|CAB37785.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 13/127 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G N GKS+L NR +++I + TTR I + ++ ++ LDT G+ A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--A 66 Query: 84 KDSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILIL 137 KD+ I+ L+ + +D++ VVD S ++K L +E+ K + L++ Sbjct: 67 KDALLSKEIKSLNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKINPNCFLVI 121 Query: 138 NKIDCVK 144 NKID K Sbjct: 122 NKIDNDK 128 >gi|322381368|ref|ZP_08055371.1| tRNA modification GTPase TrmE-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154944|gb|EFX47215.1| tRNA modification GTPase TrmE-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 460 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 21 RSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V A+VG N GKS+L+N +IVT TTR ++ V+ + LDT G Sbjct: 220 REGIVTAIVGKPNVGKSSLMNALAQENRAIVTDIPGTTRDVIEEYVNVGGIPLKLLDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S S + AD++ LV++S L+ LL ++ R + ++ILNK Sbjct: 280 IRETTDVVEQIGVERSRSALSEADLILLVLNSSEPLEEEELRLLSQLKDRQT--LIILNK 337 Query: 140 ID 141 D Sbjct: 338 TD 339 >gi|154245777|ref|YP_001416735.1| tRNA modification GTPase TrmE [Xanthobacter autotrophicus Py2] gi|154159862|gb|ABS67078.1| small GTP-binding protein [Xanthobacter autotrophicus Py2] Length = 431 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+ G NAGKSTL+NR G + +IV+ TTR ++ + + LDT G+ Sbjct: 219 VAISGPPNAGKSTLLNRLAGREAAIVSALPGTTRDVLEVHLELAGQAVTLLDTAGLRETS 278 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDS 111 D +R + + + AD+V + D+ Sbjct: 279 DLVEAEGVRRALARAEGADVVLWLCDT 305 >gi|306518614|ref|NP_001182351.1| tRNA modification GTPase GTPBP3, mitochondrial isoform VII [Homo sapiens] Length = 514 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V + G NAGKS+LVN VSIV+ + TTR ++ V ++ DT G Sbjct: 269 RSGVHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAG 328 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI---------AKRS 130 + + +R + ++ AD++ ++D+ + + L + + S Sbjct: 329 LREGVGPVEQEGVRRARERLEQADLILAMLDASDLASPSSCNFLATVVASVGAQSPSDSS 388 Query: 131 SRLILILNKID 141 RL+L+LNK D Sbjct: 389 QRLLLVLNKSD 399 >gi|262401560|ref|ZP_06078127.1| GTP-binding protein HflX [Vibrio sp. RC586] gi|262352275|gb|EEZ01404.1| GTP-binding protein HflX [Vibrio sp. RC586] Length = 429 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 16/170 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++LVG TNAGKSTL NR A V T +R I V DT G + Sbjct: 200 ISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIDLADVGPAVLADTVGFI--R 257 Query: 85 DSYHKLM--IRLSWSTIKHADIVCLVVDSHRE-LKVNIH---DLLKEIAKRSSRLILILN 138 H L+ + + + ADI+ VVD+ E + NI +L+EI +L++N Sbjct: 258 HLPHDLVAAFKATLQETQEADILLHVVDASDERFRENIQAVETVLQEIDAHEVPTLLVMN 317 Query: 139 KIDCVKPE--RLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 KID ++ + R+ E K+V+I SA +G G + + L L Sbjct: 318 KIDNLEEQTPRIERDDEGVPKIVWI------SAMQGTGIELLFEALSERL 361 >gi|169831333|ref|YP_001717315.1| small GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] gi|238688334|sp|B1I462|DER_DESAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169638177|gb|ACA59683.1| small GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] Length = 438 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 18/175 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKS+LVN +G + IV+ TTR V + + VF+DT G+ Sbjct: 178 IAVVGRPNVGKSSLVNAILGEERVIVSDVPGTTRDAVDTLFRRDGREYVFIDTAGMRRKA 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILI 136 ++S + + ++ +D+ +V+D ++++ + I L +E K + I++ Sbjct: 238 RIRESIEYYSVLRAKKALERSDLALVVLDFTDGVTNQDQR--IAGLAEEAGKGT---IIV 292 Query: 137 LNKIDCVKPERLLE---QAEIANKLVFI--EKTFMVSATKGHGCDDVLNYLCSTL 186 +NK D + + Q E+ +L+FI VSA G G +L+ + S + Sbjct: 293 VNKWDLAEGSGVSASRYQEEVRRELIFIGYAPVLCVSAVSGLGVPKILDTVESVM 347 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 15/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 VA+VG N GKSTL NR +G + ++V + TR + V + +DT GI + Sbjct: 5 VVAIVGRPNVGKSTLFNRILGRQAAVVDAEPGVTRDRLYQEVDWAGRHFILVDTGGIESQ 64 Query: 83 -AKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL---KVNIHDLLKEIAKRSSRLIL-IL 137 +D +++ ++ + + A ++ V+D + L V + LL +RSS+ +L ++ Sbjct: 65 AGEDMANRVFDQVRRA-MAEAQLILYVLDGNAGLLEEDVQVAALL----RRSSKPVLVVV 119 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NK+D R L A+ + + + VSA +G D+L+ + + +P Sbjct: 120 NKVDDFS--RPLPLADFYR--LGLGEPVPVSAAQGLNIGDLLDLVVAGMP 165 >gi|167749119|ref|ZP_02421246.1| hypothetical protein EUBSIR_00063 [Eubacterium siraeum DSM 15702] gi|167657918|gb|EDS02048.1| hypothetical protein EUBSIR_00063 [Eubacterium siraeum DSM 15702] Length = 419 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 75/188 (39%), Gaps = 24/188 (12%) Query: 22 SGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 S CV A+VG TNAGKSTL+N GA V T R I + +DT G+ Sbjct: 204 SVCVGAIVGYTNAGKSTLLNALTGAGVLAEDKLFATLDLTSRAIELPDGRSLTLVDTVGL 263 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILI 136 + + + ADI+ V D+ RE LL E+ +I + Sbjct: 264 IRRLPHHLVEAFKSTLEEAASADIILHVCDASDPEAREKAQTTLSLLSELGCGEIPVITV 323 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNK D + E L E T M+SA G G D++L + L D Sbjct: 324 LNKCDKLDYE-----------LPPAENTVMISAKNGTGFDELLKAISDNL--------TD 364 Query: 197 QISDLPMF 204 ++S + M Sbjct: 365 KVSRMEML 372 >gi|78184221|ref|YP_376656.1| GTP-binding protein EngA [Synechococcus sp. CC9902] gi|123581907|sp|Q3AZ65|DER_SYNS9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78168515|gb|ABB25612.1| Small GTP-binding protein domain [Synechococcus sp. CC9902] Length = 455 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G ++E ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + + A + ++VD + L + + + ++ +L +NK + Sbjct: 64 DDDSEFLPEIREQAALALDEASVALVIVDGKQGLTAADESIAEFLRQQRCPTLLAVNKCE 123 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 V+ + L AE + + + + + +SA G G +VL+ + + LP Sbjct: 124 SVE-QGLAMAAEFWS--LGLGEPYPISAIHGAGTAEVLDQVLTFLP 166 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 8/185 (4%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 + ++ F KD D ++++G N GKS+L+N G + +IV+ TTR + Sbjct: 158 LDQVLTFLPPKDQEGDEEEPIQMSIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTID 217 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 + + +DT GI + + I S+ I+ +D+ LV+D+ + Sbjct: 218 TNIVRENRPWRLVDTAGIRRRRSVNYGPEYFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHG 174 L I + ++++NK D V+ + A E+ KL F++ M+ SA G Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDAVEKDSHTMSATEKELRAKLYFLDWAPMLFTSALTGQR 337 Query: 175 CDDVL 179 + + Sbjct: 338 VESIF 342 >gi|238797565|ref|ZP_04641062.1| Uncharacterized GTP-binding protein yhbZ [Yersinia mollaretii ATCC 43969] gi|238718562|gb|EEQ10381.1| Uncharacterized GTP-binding protein yhbZ [Yersinia mollaretii ATCC 43969] Length = 391 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 21/192 (10%) Query: 10 NEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE 69 E +D + V ++G NAGKST + AK + + T + + + E Sbjct: 147 GETRDLTLELLLLADVGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLIPSLGVVRMDYE 206 Query: 70 SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHAD-------IVCLVVDSHRELKVNIHDL 122 V D PG+ L IR +KH + +V L + N + Sbjct: 207 QSFVVADIPGLIEGASEGAGLGIRF----LKHLERCRVLLHLVDLAPIDESDPVKNAQVI 262 Query: 123 LKEIAKRSSRLI-----LILNKIDCVKPERLLEQAE-IANKLVFIEKTFMVSATKGHG-- 174 + E+ + S L L+ NKID + PE +A+ I L + +K +M+SA Sbjct: 263 INELQQYSENLAKKPRWLVFNKIDLIDPEEAETRAKAIVEALGWEDKYYMISAANRENVN 322 Query: 175 --CDDVLNYLCS 184 C DV+N++ S Sbjct: 323 ALCWDVMNFINS 334 >gi|332559704|ref|ZP_08414026.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides WS8N] gi|332277416|gb|EGJ22731.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides WS8N] Length = 428 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 44/86 (51%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VGA NAGKSTL+N + +I + TTR ++ + + FLDT G+ Sbjct: 215 VAIVGAPNAGKSTLLNALARREAAITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRETS 274 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVD 110 D L I + + K AD+ ++D Sbjct: 275 DLVESLGIERAVTRAKAADLRVFLLD 300 >gi|329120372|ref|ZP_08249039.1| ribosome-associated GTPase EngA [Neisseria bacilliformis ATCC BAA-1200] gi|327462327|gb|EGF08653.1| ribosome-associated GTPase EngA [Neisseria bacilliformis ATCC BAA-1200] Length = 490 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 8/171 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDTPGI---F 81 A++G N GKSTLVN +G + I TTR + I E+E + +DT G+ Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDTAGVRRRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + ++ +++ LV+D+ +++ + + L++ +NK D Sbjct: 238 KVDEAVEKFSVIKAMQAVEASNVAVLVLDAQQDIADQDATIAGFALEAGRALVVAVNKWD 297 Query: 142 CVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCSTLPLA 189 + ER + + +IA KL F++ K +SA K G D + + + + A Sbjct: 298 GISEERRNDIKRDIARKLYFLDFAKFHFISALKEKGIDGLFDSIQAAYDAA 348 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR +K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRSKDALVHDLPGLTRDRHYGHGRLGSKPYLVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHREL 115 DS H+ M + + + AD V +VD+ L Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDARTGL 96 >gi|325144121|gb|EGC66428.1| GTP-binding protein [Neisseria meningitidis M01-240013] Length = 536 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G + I TTR + I E+E + +DT Sbjct: 223 DAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 281 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 282 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 341 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + +NK D + ER + + +I KL F++ K +SA K G D + + + + Sbjct: 342 VAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGIDGLFDSIQAA 395 Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 8/175 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 55 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 114 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS H+ M + + + AD V +VD L + + + + L +NK + Sbjct: 115 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGE 173 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 R + AE + + +++S G G ++ + P P V AD Sbjct: 174 GGN--RAVLAAEFYE--LALGDPYVISGAHGDGVYYLIEEILENFP-EPEVEEAD 223 >gi|315658242|ref|ZP_07911114.1| ribosome-associated GTPase EngA [Staphylococcus lugdunensis M23590] gi|315496571|gb|EFU84894.1| ribosome-associated GTPase EngA [Staphylococcus lugdunensis M23590] Length = 436 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 8/159 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VVAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGI-EI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 D+ + IR I AD++ +V+ RE +++ +I +S + ++L +NK+D Sbjct: 64 GDAPFQTQIRAQAEIAIDEADVIIFMVNV-REGLTQSDEMVAQILYKSKKPVVLAVNKVD 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + + L F E + +S + G G D+L+ Sbjct: 123 --NPEMKTDIYDFY-ALGFGEP-YPISGSHGLGLGDLLD 157 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N GKS+LVN +G + IV++ TTR + + V +DT G+ Sbjct: 178 LSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYTYDNQDYVLIDTAGMRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I+ +++V +V+D+ + + + +++++NK D Sbjct: 238 KVYESTEKYSVLRALKAIERSNVVLIVIDAEEGIIEQDKRVAGYAHEEGKAVVIVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 TVE 300 >gi|167623345|ref|YP_001673639.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4] gi|167353367|gb|ABZ75980.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4] Length = 413 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 7/164 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A++G NAGKS+L+N VG V+IV+ K TT ++ + + F DT GI + Sbjct: 23 IAILGRRNAGKSSLLNMIVGQHVAIVSDIKGTTTDAVAKPYELLPLGPVTFFDTAGI-DD 81 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + ++ + + AD+ LV D + L + L++E+ +++ NK+D Sbjct: 82 NGALGEQRVKATRHVLYRADMALLVADD-QGLTEHEFALIEEMTALKLPFLIVFNKVDIC 140 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 P KL FI VSA KG G +V + +P Sbjct: 141 MPTAEDIGFCRQRKLPFIA----VSAAKGLGDKEVKRLISELVP 180 >gi|55377976|ref|YP_135826.1| GTP-binding protein HflX [Haloarcula marismortui ATCC 43049] gi|55230701|gb|AAV46120.1| GTP-binding protein HflX [Haloarcula marismortui ATCC 43049] Length = 288 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 38/191 (19%) Query: 24 CVALVGATNAGKSTLVNRFVG-------------------AKVSIVTHKVQTTRSIVRGI 64 VAL G TNAGKSTL+ R ++ + T TTR R Sbjct: 46 LVALAGYTNAGKSTLLRRLADDLDVDENDDLHPDLDTTAESEDRLFTTLGTTTR---RAE 102 Query: 65 VSEKESQIVFLDTPGIFNAKDSYHKLM--IRLSWSTIKHADIVCLVVDSH------RELK 116 V ++E ++ DT G +D H L+ + + ++ HAD+V LVVD RE Sbjct: 103 VGKRE--VLVTDTVGFI--QDLPHWLVESFKSTLGSVYHADLVLLVVDVSESVEEIREKL 158 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 V HD L E + + ++ +LNK D V E + + + + L VSA +G D Sbjct: 159 VTSHDTLYE--RNEAPIVTVLNKTDMVDDEEVRRKRDALSSLA--PNPVAVSAEQGLNID 214 Query: 177 DVLNYLCSTLP 187 D+ + LP Sbjct: 215 DLAERIDHELP 225 >gi|157692414|ref|YP_001486876.1| HflX family GTP-binding protein [Bacillus pumilus SAFR-032] gi|157681172|gb|ABV62316.1| HflX family GTP-binding protein [Bacillus pumilus SAFR-032] Length = 420 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 7/150 (4%) Query: 4 GEITFFNEHKDFVQDNSRSGCV---ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 G+++ EH+ ++ + V A+VG TNAGKSTL N+ A T + Sbjct: 178 GQLSTVKEHRTRYRERRKKNGVFQIAIVGYTNAGKSTLFNQLTDADSHEEDLLFATLDPM 237 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LK 116 R + ++ DT G + R + +K AD + V+DS E + Sbjct: 238 TRKMTLASGYSVLISDTVGFIQDLPTTLIAAFRSTLEEVKEADYLLHVIDSSNEDYEGHE 297 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 +H+LL+E+ ++ + NK D ++P+ Sbjct: 298 RTVHELLEELEADRIPMLTVYNKEDQIRPD 327 >gi|78213545|ref|YP_382324.1| GTP-binding protein EngA [Synechococcus sp. CC9605] gi|123577697|sp|Q3AI13|DER_SYNSC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78198004|gb|ABB35769.1| Small GTP-binding protein domain [Synechococcus sp. CC9605] Length = 455 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G ++E ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + ++ A + ++VD + L + + + +L +NK Sbjct: 64 DDDSEFLPEIREQAALALEEASVALVIVDGQQGLTAADESIAEFLRSHRCPTLLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C PE+ L A L E +SA G G ++L+ + + LP Sbjct: 122 CESPEQGLAMAGEFWSLGLGEP-HPISAIHGAGTGELLDQVLTFLP 166 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 8/185 (4%) Query: 3 MGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVR 62 + ++ F KD D +A++G N GKS+L+N G + +IV+ TTR + Sbjct: 158 LDQVLTFLPPKDQEGDEEEPIQMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTID 217 Query: 63 GIVSEKESQIVFLDTPGIFNAKDSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 + + +DT GI + + I S+ I+ +D+ LV+D+ + Sbjct: 218 TSIIRENRPWRLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 120 HDLLKEIAKRSSRLILILNKIDCVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHG 174 L I + ++++NK D ++ + A E+ +KL F++ M+ SA G Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDALEKDSHTMTAMEKELRSKLYFLDWAPMLFTSALTGQR 337 Query: 175 CDDVL 179 + + Sbjct: 338 VESIF 342 >gi|257055518|ref|YP_003133350.1| GTP-binding protein EngA [Saccharomonospora viridis DSM 43017] gi|256585390|gb|ACU96523.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Saccharomonospora viridis DSM 43017] Length = 470 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---- 80 VALVG N GKS+L+N+ G + ++V TT V +V F+DT G+ Sbjct: 210 VALVGKPNVGKSSLLNKLTGEQRAVVDSVAGTTVDPVDSLVELDGQLWRFIDTAGLRKRV 269 Query: 81 --FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILN 138 + + Y L + + I A++V +++D+ L ++ +A L+L N Sbjct: 270 QTASGTEYYASLRTK---NAIDAAEVVIVLLDASEPLSEQDLRIVTSVADAGRALVLAFN 326 Query: 139 KIDCVKPER 147 K D V ER Sbjct: 327 KWDLVDEER 335 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKSTLVNR +G + ++V TR + + + + +DT G + Sbjct: 35 VVAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRISYDATWRGRRFTLVDTGG-WEP 93 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKIDC 142 S + I V L+V + + ++ +RS R ++L+ NK+D Sbjct: 94 GASGLQASITAQAERAMSEADVVLLVVDAVVGPTATDEAVAKVLRRSKRPVLLVANKVDS 153 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAP 190 E LL + L E + VSA G D+L+ + LP AP Sbjct: 154 ---ESLLPEVASLWSLGLGEP-YAVSALHGRSSGDLLDAVVDALPEAP 197 >gi|253996245|ref|YP_003048309.1| GTP-binding protein EngA [Methylotenera mobilis JLW8] gi|253982924|gb|ACT47782.1| small GTP-binding protein [Methylotenera mobilis JLW8] Length = 484 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 6/153 (3%) Query: 14 DFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV 73 D+ D R VA+VG N GKSTLVN +G + I + TTR + + + Sbjct: 173 DYTGD--RIPKVAIVGRPNVGKSTLVNALLGEERVIAYDEPGTTRDSIHIDLEKNGKHYT 230 Query: 74 FLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS 130 +DT G+ ++ K + + I+ A++V LVVD+ + + I Sbjct: 231 LIDTAGVRKRGRVFEAIEKFSVIKTIQAIEEANVVILVVDAQEGITEQDAHVAAYILDAG 290 Query: 131 SRLILILNKIDCVKP-ERLLEQAEIANKLVFIE 162 L++ +NK D +K ER + EI KL F++ Sbjct: 291 RALVVAINKWDGLKEDERDWIKREIDRKLQFLD 323 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 13/128 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRS--IVRGIVSEKESQIVFLDTPGIF 81 + LVG N GKSTL NR + ++V TR RGI + + +V DT G Sbjct: 4 TIVLVGRPNVGKSTLFNRLTKTRDALVADLPGLTRDRHYGRGIGASQPYLVV--DTGGFE 61 Query: 82 NAKDS-YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILI 136 DS K M + + I AD + +VD + V+ D+ EIA R R ++L Sbjct: 62 PHTDSGILKAMAKQTLQAIDEADAIIFLVDGRQ--GVSPQDM--EIANRLRRSKCPVLLA 117 Query: 137 LNKIDCVK 144 +NK + ++ Sbjct: 118 VNKTEGMQ 125 >gi|194014979|ref|ZP_03053596.1| GTP-binding protein HflX [Bacillus pumilus ATCC 7061] gi|194014005|gb|EDW23570.1| GTP-binding protein HflX [Bacillus pumilus ATCC 7061] Length = 420 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 7/150 (4%) Query: 4 GEITFFNEHKDFVQDNSRSGCV---ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 G+++ EH+ ++ + V A+VG TNAGKSTL N+ A T + Sbjct: 178 GQLSTVKEHRTRYRERRKKNGVFQIAIVGYTNAGKSTLFNQLTDADSHEEDLLFATLDPM 237 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRE----LK 116 R + ++ DT G + R + +K AD + V+DS E + Sbjct: 238 TRKMTLASGYSVLISDTVGFIQDLPTTLIAAFRSTLEEVKEADYLLHVIDSSNEDYEGHE 297 Query: 117 VNIHDLLKEIAKRSSRLILILNKIDCVKPE 146 +H+LL+E+ ++ + NK D ++P+ Sbjct: 298 RTVHELLEELEADRIPMLTVYNKEDQIRPD 327 >gi|57505514|ref|ZP_00371441.1| GTP-binding protein, Era/ThdF family [Campylobacter upsaliensis RM3195] gi|57016061|gb|EAL52848.1| GTP-binding protein, Era/ThdF family [Campylobacter upsaliensis RM3195] Length = 457 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 7/164 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L+G N GKS+L NR +++I + TTR + V+ + + +D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRIARQRIAITSEISGTTRDTNKIKVNINGKEALLIDSGGL-DE 61 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + + S + K+ADI+ +VD + K + LI+NK+D Sbjct: 62 SNELFKNVKQNSLNAAKNADIILYLVDGKNLPDEEDRKFFYTLKKLQKPMALIINKVDNK 121 Query: 144 K-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 K ER+ E +++ F +S T G D++ +L + L Sbjct: 122 KDEERVYEFVNFG-----VKELFNLSVTHNVGLDELYAWLENFL 160 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 8/127 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + +VG N GKS+L+N V + S+V+ TT V V K+ + F+DT GI Sbjct: 199 IGIVGRVNVGKSSLLNALVKEQRSVVSSIAGTTIDPVNESVMYKDKVLEFIDTAGIRKRG 258 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + + + ++++ I LV+D++ EL I L I+K +I++LNK Sbjct: 259 KIQGIERFALNRTEKMLQNSQIALLVLDANEGFNELDERIAGL---ISKHYLGVIIVLNK 315 Query: 140 IDCVKPE 146 D + E Sbjct: 316 WDKTRYE 322 >gi|300869946|ref|YP_003784817.1| putative GTPase ObgE [Brachyspira pilosicoli 95/1000] gi|300687645|gb|ADK30316.1| putative GTPase, ObgE [Brachyspira pilosicoli 95/1000] Length = 680 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 17/148 (11%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + LVG NAGKS+L+ R A I ++ T + + E V D PGI Sbjct: 163 IGLVGMPNAGKSSLLARLTRANPKIASYPFTTLTPNLGVCYLDYERSFVIADIPGIIEGA 222 Query: 85 DSYHKLMIRLSWSTIKHADIVCL--------VVDSHRELKVNIHDLLKEIAKRSSRLILI 136 L + I+ +C VVD++++L+ + KE+ K+ S I++ Sbjct: 223 SEGAGLGLTF-LRHIERTGALCFVIDLTDEDVVDTYKKLRNELKQYSKELIKKKS--IIV 279 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKT 164 LNK D +LE+ EI K+ IEK Sbjct: 280 LNKTD------MLEEDEIKEKVKAIEKA 301 >gi|239636852|ref|ZP_04677851.1| ribosome-associated GTPase EngA [Staphylococcus warneri L37603] gi|239597526|gb|EEQ80024.1| ribosome-associated GTPase EngA [Staphylococcus warneri L37603] Length = 436 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 IVAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGI-EI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ + IR I+ AD++ +V+ L + + + + K ++L +NK+D Sbjct: 64 GDAPFQTQIRAQAEIAIEEADVIVFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDN 123 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 V+ + L F E + +S + G G D+L+ + Sbjct: 124 VE---MRNDIYDFYSLGFGEP-YPISGSHGLGLGDLLDAVVENF 163 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N GKS+LVN +G + IV++ TTR V S V +DT G+ Sbjct: 178 LSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSFDGQDYVLIDTAGMRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I+ +++V +V+D+ + + + + +++++NK D Sbjct: 238 KVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDKRVAGYAHEEGKAIVIVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 TVE 300 >gi|227485741|ref|ZP_03916057.1| tRNA modification GTP-binding protein TrmE [Anaerococcus lactolyticus ATCC 51172] gi|227236296|gb|EEI86311.1| tRNA modification GTP-binding protein TrmE [Anaerococcus lactolyticus ATCC 51172] Length = 454 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 +VG N GKS+L+N + +IVT TTR ++ +S + + DT GI + D Sbjct: 225 IVGKPNVGKSSLLNVLLDENRAIVTDIPGTTRDLITEYISLGDFTLKINDTAGIRDTDDL 284 Query: 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 K+ + S I +D++ + D R+ +L I R +LILNK D Sbjct: 285 VEKIGVDKSIELIDESDLILAIFDMSRDFDEEDKKILDLI--RGKNALLILNKAD 337 >gi|114569754|ref|YP_756434.1| small GTP-binding protein [Maricaulis maris MCS10] gi|114340216|gb|ABI65496.1| small GTP-binding protein [Maricaulis maris MCS10] Length = 490 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 +A+VG N GKSTL NR G ++IV + TR + ++ +DT G ++ Sbjct: 8 IAVVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRLGDLPLLLIDTAGYDDSE 67 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKIDC 142 KD M + I AD+ L++D+ R + + ++ +RS + +L+L NK + Sbjct: 68 KDGLDAEMRTQTEMAIHDADLCLLLIDA-RAGVTPLDVVFADVIRRSGKPVLLLANKCEG 126 Query: 143 VKPER-LLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL-PLA 189 E L++ E+ + + SA G G D+ + + TL P+A Sbjct: 127 KAGESGLIDAFELG-----MGEPIAFSAAHGAGIGDLYDAVVHTLGPMA 170 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 26/176 (14%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A++G NAGKSTL+N +G + I + TR + ++ DT G+ Sbjct: 187 IAVIGRPNAGKSTLINTLIGEERLITGPEAGITRDAISVDWVWDGRRVRLHDTAGLRKRG 246 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHREL-KVNIHDLLKEIAKRSSRLILI-LNK 139 D ++ + +K A++V L++D+ L K ++H L ++A + R + I ++K Sbjct: 247 KVADRLERMSAADTLRAVKFAEVVLLLMDAEHPLEKQDLH--LADMAYKEGRAVAIAVSK 304 Query: 140 IDCVKP------------ERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 +D V ERLL Q A +SA K G D ++ L Sbjct: 305 MDLVPNREAYLKEIRLEFERLLPQMTGA-------PVLPMSALKKKGLDAIMPTLA 353 >gi|82582309|sp|Q49UI4|MNME_STAS1 RecName: Full=tRNA modification GTPase mnmE Length = 459 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR + V+ + + +DT G Sbjct: 219 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAG 278 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D ++ + S + AD++ V++ + L L + I + I+I+NK Sbjct: 279 IRDTEDIVERIGVERSRKALGEADLILFVLNYNERLTDEDRKLYEVIKNEDA--IVIVNK 336 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM 166 +D K L E ++ + I+ + + Sbjct: 337 MDLDKHLDLDEVKDMIGDMPLIQTSML 363 >gi|291556831|emb|CBL33948.1| GTP-binding protein HflX [Eubacterium siraeum V10Sc8a] Length = 419 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 75/188 (39%), Gaps = 24/188 (12%) Query: 22 SGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 S CV A+VG TNAGKSTL+N GA V T R I + +DT G+ Sbjct: 204 SVCVGAIVGYTNAGKSTLLNALTGAGVLAEDKLFATLDLTSRAIELPDGRSLTLVDTVGL 263 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILI 136 + + + ADI+ V D+ RE LL E+ +I + Sbjct: 264 IRRLPHHLVEAFKSTLEEAASADIILHVCDASDPEAREKAQTTLSLLSELGCGEIPVITV 323 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 LNK D + E L E T M+SA G G D++L + L D Sbjct: 324 LNKCDKLDYE-----------LPPAENTVMISAKNGTGFDELLKAISDNL--------TD 364 Query: 197 QISDLPMF 204 ++S + M Sbjct: 365 KVSRMEML 372 >gi|254429154|ref|ZP_05042861.1| translation initiation factor IF-2, putative [Alcanivorax sp. DG881] gi|196195323|gb|EDX90282.1| translation initiation factor IF-2, putative [Alcanivorax sp. DG881] Length = 900 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 19/178 (10%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 +D V R+ V ++G + GK++L++ AKV+ T+ I V ++ I Sbjct: 393 RDSVDSEHRAPVVTIMGHVDHGKTSLLDYIRKAKVA-SGEAGGITQHIGAYHVEHEKGMI 451 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 FLDTPG H + K DIV +VV + L + + + Sbjct: 452 TFLDTPG--------HAAFTAMRARGAKATDIVVIVVAADDGLMPQTEEAINHAKASGAP 503 Query: 133 LILILNKID--CVKPERLLEQAEIANKLVFIEK-----TFM-VSATKGHGCDDVLNYL 182 +I+ +NKID P+R+ + E+A K V E+ F+ VSA G G DD+L+ + Sbjct: 504 IIIAVNKIDKEQADPDRV--RNEMATKDVIPEEWGGEYQFINVSAHTGQGIDDLLDAI 559 >gi|221054502|ref|XP_002258390.1| gtp-binding protein [Plasmodium knowlesi strain H] gi|317411718|sp|B3L3C9|GUF1_PLAKH RecName: Full=Translation factor GUF1 homolog, mitochondrial; AltName: Full=Elongation factor 4 homolog; Short=EF-4; AltName: Full=GTPase GUF1 homolog; AltName: Full=Ribosomal back-translocase; Flags: Precursor gi|193808459|emb|CAQ39162.1| gtp-binding protein, putative [Plasmodium knowlesi strain H] Length = 894 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 98/195 (50%), Gaps = 30/195 (15%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI---- 72 Q+N R+ C+ + ++GKSTL +RF+ +I K+Q + + EK I Sbjct: 198 QENIRNFCI--LAHIDSGKSTLADRFLELTKTIKKKKMQDQFLDMMSLEREKGITIKLKA 255 Query: 73 --------VF--LDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDL 122 +F +DTPG F D YH+ ++ S S + A L++D + ++ ++ Sbjct: 256 VRMNYKNYIFNLIDTPGHF---DFYHE--VKRSLSVCEGA---ILLIDGTKGIQSQTLNI 307 Query: 123 LKEIAKRSSRLILILNKIDC--VKPERLLEQAEIANKLVFIEKTFM-VSATKGHGCDDVL 179 E+ K + ++I ++NKID + E++ + ++ NK F++K + +SA HG + + Sbjct: 308 FMELQKHNLKIIPVINKIDLNICRLEKI--ENDLLNKFHFMKKDILHISAKYSHGVESLF 365 Query: 180 NYLCSTLPLAPWVYS 194 + S +P +P + S Sbjct: 366 QRIVSEIP-SPAIKS 379 >gi|167462792|ref|ZP_02327881.1| tRNA modification GTPase TrmE [Paenibacillus larvae subsp. larvae BRL-230010] Length = 457 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 21 RSGCV-ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G V A+VG N GKS+L+N +IVT TTR ++ V+ + LDT G Sbjct: 217 REGIVTAIVGKPNVGKSSLMNALAQENRAIVTDIPGTTRDVIEEYVNVGGIPLKLLDTAG 276 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I D ++ + S S + AD++ LV++S L+ LL ++ R + ++ILNK Sbjct: 277 IRETTDVVEQIGVERSRSALSEADLILLVLNSSEPLEEEELRLLSQLKDRQT--LIILNK 334 Query: 140 ID 141 D Sbjct: 335 TD 336 >gi|325981719|ref|YP_004294121.1| GTP-binding protein Obg/CgtA [Nitrosomonas sp. AL212] gi|325531238|gb|ADZ25959.1| GTP-binding protein Obg/CgtA [Nitrosomonas sp. AL212] Length = 354 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 16/178 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF-NA 83 V L+G NAGKSTL+ A+ + + T + + + + V D PG+ A Sbjct: 162 VGLLGMPNAGKSTLIRAVSAARPKVADYPFTTLQPNLGVVRVDHNRSFVMADIPGLIEGA 221 Query: 84 KDSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI-----L 135 D H+ + L+ + + I +D+ +L L E+ K L L Sbjct: 222 ADGVGLGHRFLKHLTRTRLLLHVIDMTPLDAETDLIHEARALAGELEKYDESLYQKPRWL 281 Query: 136 ILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDD----VLNYLCSTLP 187 +LNK D + PE+ ++ + +KL + E F++SA G GC ++ YL LP Sbjct: 282 VLNKTDMM-PEQERDELCRQFVDKLEWKENYFIISALTGEGCKHLIYAIMEYLEQHLP 338 >gi|16079341|ref|NP_390165.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. 168] gi|221310200|ref|ZP_03592047.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. 168] gi|221314523|ref|ZP_03596328.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319445|ref|ZP_03600739.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. JH642] gi|221323721|ref|ZP_03605015.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. SMY] gi|321311754|ref|YP_004204041.1| GTP-binding protein Der [Bacillus subtilis BSn5] gi|1730915|sp|P50743|DER_BACSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1146219|gb|AAC83966.1| similar to Escherichia coli GTP-binding protein Era; putative [Bacillus subtilis subsp. subtilis str. 168] gi|2634702|emb|CAB14200.1| GTPase essential for ribosome 50S subunit assembly [Bacillus subtilis subsp. subtilis str. 168] gi|320018028|gb|ADV93014.1| GTP-binding protein Der [Bacillus subtilis BSn5] Length = 436 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 8/162 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + AD++ +V+ + ++ K + + ++L +NK+D Sbjct: 65 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLC 183 + +A I + L F E + +S T G G D+L+ + Sbjct: 125 E-----MRANIYDFYSLGFGEP-YPISGTHGLGLGDLLDAVA 160 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G N GKS+LVN +G + IV++ TTR V + + + V +DT G+ Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 239 Query: 87 Y---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 Y K + + I +++V +V+D + + + +++++NK D V Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 Query: 144 -KPERLLEQAE--IANKLVFIEKT---FMVSATK 171 K E +++ E I + F++ FM + TK Sbjct: 300 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTK 333 >gi|310828944|ref|YP_003961301.1| hypothetical protein ELI_3378 [Eubacterium limosum KIST612] gi|308740678|gb|ADO38338.1| hypothetical protein ELI_3378 [Eubacterium limosum KIST612] Length = 397 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 9/165 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS-EKESQIVFLDTPGIFNA 83 + + G N+GKS+L+N G K+++V+ TT V + +F+DT G F+ Sbjct: 14 IGIYGKRNSGKSSLINALTGQKIALVSDVAGTTADPVYKYMEIHGIGPCMFIDTAG-FDD 72 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLV-VDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 ++ + + + DI +V D+H E + N D K KR++ +I I+NK D Sbjct: 73 IGELGEMRVGQTRKAMDKTDIALIVWGDTHTEEEYNWIDAFK---KRNTPVIPIINKSDI 129 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 + LL +EI +L +VSA G D + L +LP Sbjct: 130 LTDIELL-ASEIKARLGV--PPLIVSAKTKEGMDRIREALIRSLP 171 >gi|291484708|dbj|BAI85783.1| GTP-binding protein EngA [Bacillus subtilis subsp. natto BEST195] Length = 436 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 8/162 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + AD++ +V+ + ++ K + + ++L +NK+D Sbjct: 65 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLC 183 + +A I + L F E + +S T G G D+L+ + Sbjct: 125 E-----MRANIYDFYSLGFGEP-YPISGTHGLGLGDLLDAVA 160 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G N GKS+LVN +G + IV++ TTR V + + + V +DT G+ Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 239 Query: 87 Y---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 Y K + + I +++V +V+D + + + +++++NK D V Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 Query: 144 -KPERLLEQAE--IANKLVFIEKT---FMVSATK 171 K E +++ E I + F++ FM + TK Sbjct: 300 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTK 333 >gi|116075028|ref|ZP_01472288.1| GTP-binding protein EngA [Synechococcus sp. RS9916] gi|116067225|gb|EAU72979.1| GTP-binding protein EngA [Synechococcus sp. RS9916] Length = 455 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A+VG N GKS+L+N G + +IV+ TTR + + + +DT GI + Sbjct: 180 MAIVGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTNIERQGMPWKLVDTAGIRRRR 239 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I S+ I+ +D+ LV+D+ + L I ++++NK D Sbjct: 240 SVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEDEGRACVVVVNKWD 299 Query: 142 CVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHGCDDVL 179 V+ + A E+ KL F++ M+ SA G D + Sbjct: 300 AVEKDSHTMPAMEKELRAKLYFLDWAPMLFTSALTGQRVDSIF 342 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G ++E ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + + A + ++VD + + + + + ++ +L +NK Sbjct: 64 DDDSEFLPEIREQANLAMAEACVALVIVDGQQGMTAADESIAEWLRSQNCPTLLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C P++ L A L E +SA G G D+L+ + + LP Sbjct: 122 CESPDQGLAMAAEFWSLGLGEP-HPISAIHGAGTGDLLDQVLTFLP 166 >gi|73663753|ref|YP_302534.1| tRNA modification GTPase TrmE [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496268|dbj|BAE19589.1| putative tRNA modification GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 460 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 21 RSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 R G +VG N GKS+++N + +IVT TTR + V+ + + +DT G Sbjct: 220 REGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAG 279 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 I + +D ++ + S + AD++ V++ + L L + I + I+I+NK Sbjct: 280 IRDTEDIVERIGVERSRKALGEADLILFVLNYNERLTDEDRKLYEVIKNEDA--IVIVNK 337 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFM 166 +D K L E ++ + I+ + + Sbjct: 338 MDLDKHLDLDEVKDMIGDMPLIQTSML 364 >gi|300868233|ref|ZP_07112864.1| GTP-binding protein, HSR1-related [Oscillatoria sp. PCC 6506] gi|300333757|emb|CBN58048.1| GTP-binding protein, HSR1-related [Oscillatoria sp. PCC 6506] Length = 539 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 17/170 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVS-----IVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +A+VG TNAGKSTL+N A+V T T R ++ V+E+ IV DT Sbjct: 367 SIAIVGYTNAGKSTLLNVLTNAEVYTADQLFATLDPTTRRLVIADAVTEESLSIVLTDTV 426 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS-----HRELKVNIHDLLKEIAKRSSRL 133 G + R + + AD + VVD H +++ ++ +L E+ Sbjct: 427 GFIHELPPALIDAFRATLEEVTDADALLHVVDLSHPAWHSQIR-SVMTILTEMPVTPGPA 485 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLC 183 ++ NKID V + L + E + VFI SA K G + + L Sbjct: 486 LVAFNKIDRVDGDTLRQAQEEFPQAVFI------SAAKALGLETLRQRLA 529 >gi|256820197|ref|YP_003141476.1| GTP-binding protein EngA [Capnocytophaga ochracea DSM 7271] gi|256581780|gb|ACU92915.1| small GTP-binding protein [Capnocytophaga ochracea DSM 7271] Length = 434 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRKAK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I+H+D+ L++D+ R + ++ +A+R+ + I+IL NK D Sbjct: 238 VKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFESQDANIF-WLAQRNRKGIVILVNKWD 296 Query: 142 CVKPE 146 V+ E Sbjct: 297 LVEKE 301 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 7/168 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR + + +IV TR G +DT G + Sbjct: 2 SAIVAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNK 139 DS+ K + + I AD + +V+ L + + + E+ ++ + IL+ +NK Sbjct: 62 AGGDDSFEKEINKQVALAIDEADAIIFMVNVEEGL-TGMDESVAELLRKCHKPILVAVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D + + + E + +S+ G G ++L+ L + LP Sbjct: 121 VDSNNRRNDMHEF----YALGFEHLYALSSVNGSGTGELLDDLVALLP 164 >gi|119605004|gb|EAW84598.1| GTP binding protein 3 (mitochondrial), isoform CRA_b [Homo sapiens] Length = 497 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Query: 21 RSGC-VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 RSG V + G NAGKS+LVN VSIV+ + TTR ++ V ++ DT G Sbjct: 252 RSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAG 311 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI---------AKRS 130 + + +R + ++ AD++ ++D+ + + L + + S Sbjct: 312 LREGVGPVEQEGVRRARERLEQADLILAMLDASDLASPSSCNFLATVVASVGAQSPSDSS 371 Query: 131 SRLILILNKID 141 RL+L+LNK D Sbjct: 372 QRLLLVLNKSD 382 >gi|82703488|ref|YP_413054.1| GTP-binding protein EngA [Nitrosospira multiformis ATCC 25196] gi|123768150|sp|Q2Y6F9|DER_NITMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|82411553|gb|ABB75662.1| Small GTP-binding protein domain [Nitrosospira multiformis ATCC 25196] Length = 466 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 20/224 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---F 81 +A+VG N GKSTLVN +G + I + TTR + +DT G+ Sbjct: 178 IAIVGRPNVGKSTLVNTLLGEERVIAFDQPGTTRDSIYIDFERNGRTYTLIDTAGLRRRG 237 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +++ K + + I+ A++V LV+D+ E+ + I + L+L +NK D Sbjct: 238 KVQETVEKFSVVKTLQAIEDANVVILVLDAASEISDQDAHIGGFILEAGRALVLAVNKWD 297 Query: 142 CVKP-ERLLEQAEIANKLVFIE---KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQ 197 + +R + + +I KL F++ + +SA G G + LP Y A Sbjct: 298 SLDEYQRDMIKRDINRKLPFLQNFARFHYISALHGTGTKGL-------LPSVDAAYGA-A 349 Query: 198 ISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDGS 241 ++ LP T +TR L + K+ P + + K G Sbjct: 350 MAHLP----TPRLTR-TLLAAVEKQPPPRAGMSRPKLRYAHQGG 388 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 + LVG +N GKSTL NR ++ ++V TR G + + +DT G Sbjct: 4 TLVLVGRSNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGHGKLGDRPYLVVDTGGFEPM 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 A + M + + I AD+V +VD L + +++ + R +L +NK + Sbjct: 64 ATEGILHEMAKQTLQAIDEADVVLFIVDGRSGLTAQDKIVAEQLRRSGRRTLLAVNKTEG 123 Query: 143 V 143 + Sbjct: 124 M 124 >gi|205355964|ref|ZP_03222732.1| putative GTP binding protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346088|gb|EDZ32723.1| putative GTP binding protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 460 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L+G N GKS+L NR +++I + TTR + + + + +D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIHINSKKAMLIDSGGL-DE 61 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K + + + K +DI+ +VD + K + L++NK+D Sbjct: 62 SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNK 121 Query: 144 KPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K E E+A E AN +++ F +S T G D++ +L Sbjct: 122 KDE---ERAWEFAN--FGVKEIFNLSVTHNVGLDELYEWL 156 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L+N V + S+V+ TT V V K+ I F+DT GI Sbjct: 198 VGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRG 257 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + + + + H+ I LV+D+H EL I L +AK +I++LNK Sbjct: 258 KIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGL---VAKHYLGVIIVLNK 314 Query: 140 ID 141 D Sbjct: 315 WD 316 >gi|296332978|ref|ZP_06875435.1| GTP-binding protein EngA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674918|ref|YP_003866590.1| ribosome 50S subunit assembly GTPase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149829|gb|EFG90721.1| GTP-binding protein EngA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413162|gb|ADM38281.1| GTPase essential for ribosome 50S subunit assembly [Bacillus subtilis subsp. spizizenii str. W23] Length = 436 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 8/162 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G ++SIV TR + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG 64 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + + + + + + AD++ +V+ + ++ K + + ++L +NK+D Sbjct: 65 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 Query: 144 KPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLC 183 + +A I + L F E + +S T G G D+L+ + Sbjct: 125 E-----MRANIYDFYSLGFGEP-YPISGTHGLGLGDLLDAVA 160 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDS 86 L+G N GKS+LVN +G + IV++ TTR V + + + V +DT G+ Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMRKKGKV 239 Query: 87 Y---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 Y K + + I +++V +V+D + + + +++++NK D V Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 Query: 144 -KPERLLEQAE 153 K E +++ E Sbjct: 300 DKDESTMKEFE 310 >gi|256827122|ref|YP_003151081.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Cryptobacterium curtum DSM 15641] gi|256583265|gb|ACU94399.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Cryptobacterium curtum DSM 15641] Length = 444 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 9/165 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+VG N GKST VNR V + +IV TR +DT GI Sbjct: 6 VAVVGRPNVGKSTFVNRIVHSDEAIVHAMRGVTRDRSYHDADWNGHHFTLIDTGGIEMGD 65 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D++ + +++ + D++ L+VD + + ++ + + + + +++++NK+D Sbjct: 66 EDAFQTSIRNQAFTAARECDVILLLVDGRTGITADDEEVARILRREKAPVLVVVNKLDN- 124 Query: 144 KPERLLEQAEIANKL--VFIEKTFMVSATKGHGCDDVLNYLCSTL 186 L+ A+ + + + + +SA G G D+L+ + + L Sbjct: 125 -----LDTADAMYEFYRLGLGDPWPISAIHGTGTGDLLDAVVAEL 164 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 9/156 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA- 83 VA++G NAGKS+L N SIV+ TTR + +V+ + +DT G+ Sbjct: 184 VAIIGRPNAGKSSLTNMLSRNDRSIVSDVAGTTRDAIDTLVAHEGRAYRLVDTAGLRRKS 243 Query: 84 ---KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 +D + +R S I AD+V L+VD L + +R ++++LNK Sbjct: 244 KIDEDVEYYGFVR-SMRAIDRADVVLLMVDGTLGLTDQDQRIAGFAHERGCAMVIVLNKW 302 Query: 141 DCV----KPERLLEQAEIANKLVFIEKTFMVSATKG 172 D V + E + +Q + + V VSA G Sbjct: 303 DIVEGADRKEAVRDQITESLRFVGFAPVVAVSALTG 338 >gi|163856337|ref|YP_001630635.1| GTP-binding protein HflX [Bordetella petrii DSM 12804] gi|163260065|emb|CAP42366.1| GTP-binding protein HflX [Bordetella petrii] Length = 368 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 71/163 (43%), Gaps = 11/163 (6%) Query: 20 SRSGC--VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 +R G V+LVG TNAGKSTL N A T + R I E +V DT Sbjct: 185 ARGGALSVSLVGYTNAGKSTLFNALTRAGAYAADQLFATLDTTTRRIWIEGTGSVVLSDT 244 Query: 78 PGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKV-NIHDLLKEIAKRSSRL 133 G R + HAD++ VVD+ R+ ++ ++ +L EI S Sbjct: 245 VGFIRDLPPNLIAAFRATLEETIHADLLLHVVDAASPQRDEQIAEVNKVLAEIGAGSIPT 304 Query: 134 ILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCD 176 IL+ NKID +E+ N I + F VSAT+ G D Sbjct: 305 ILVHNKIDRAGLAPRIER----NAHGTIARVF-VSATERAGLD 342 >gi|148559467|ref|YP_001258406.1| GTP-binding protein EngA [Brucella ovis ATCC 25840] gi|166224311|sp|A5VNV9|DER_BRUO2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148370724|gb|ABQ60703.1| GTP-binding protein [Brucella ovis ATCC 25840] Length = 483 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 9/166 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V TR R I K + F +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRD--RRIHDAKLYDLKFQVIDTAGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A DS M + + I AD V V+D+ + + + + ++L+ NK Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E + A + + + +SA G G D+ + + L Sbjct: 122 EARGSEAGMYDA----FQLGLGEPCPISAKHGQGMPDLRDAIVELL 163 Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 16/180 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ +A+VG NAGKSTL+N +G + + TR + +I DT Sbjct: 207 DATKPLRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDT 266 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ ++ KL + I+ A++V +V+D+ + + I DL I + Sbjct: 267 AGMRRKARVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQIADL---IIREGR 323 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFI------EKTFMVSATKGHGCDDVLNYLCST 185 ++ NK D ++ +R + A++ K + + +S +G G D ++ + T Sbjct: 324 APVIAFNKWDLIE-DRQMVLADLYEKTARLLPQVRGLRAVPISGERGQGIDKLMENVVKT 382 >gi|89897898|ref|YP_515008.1| GTP-binding protein EngA [Chlamydophila felis Fe/C-56] gi|123483923|sp|Q256C5|DER_CHLFF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89331270|dbj|BAE80863.1| GTP-binding GTPase [Chlamydophila felis Fe/C-56] Length = 475 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 3/127 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF--- 81 +AL+G N GKS+++N + + I+ + TTR V + S + +F+DT G+ Sbjct: 215 IALIGRPNVGKSSIINGLLNEERCIIDNIPGTTRDNVDILYSHNDRSYLFIDTAGLRKMK 274 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + K+S + + I ADI LV+D+ L +L I+K I++ NK D Sbjct: 275 SVKNSIEWISSSRTEKAIARADICLLVIDATHCLSSYDKRILSLISKHKKPHIILANKWD 334 Query: 142 CVKPERL 148 +K R+ Sbjct: 335 LIKGVRM 341 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 +A++G N GKS+L NR ++IV + TTR + G + + +DT G+ ++ Sbjct: 4 IAILGRPNVGKSSLFNRMCKQSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDKDS 63 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 +D + K + + + + ADI+ LV+D + + K++ LIL+ NK D + Sbjct: 64 EDHFQKHIYKQALAGAGEADILLLVIDIRCGITEQDAAIAKQLLPLKKPLILVANKADTL 123 Query: 144 KPE 146 K E Sbjct: 124 KDE 126 >gi|58616755|ref|YP_195954.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str. Gardel] gi|81311273|sp|Q5FF19|MNME_EHRRG RecName: Full=tRNA modification GTPase mnmE gi|58416367|emb|CAI27480.1| tRNA modification GTPase [Ehrlichia ruminantium str. Gardel] Length = 439 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 8/132 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++G N+GKSTL N ++IV+ TTR ++ + IV +DT GI ++ Sbjct: 214 VAILGEPNSGKSTLFNHLAKRDIAIVSEYAGTTRDVLETHIDIAGYPIVIIDTAGIRDSN 273 Query: 85 DSYHKLMIRLSWSTIKHAD--IVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D + IR + + AD I+ L + L I DL+ + R I +L+K D Sbjct: 274 DPVEQEGIRRAKLKAESADFKIIMLPYEKKDALNNEIIDLIDD------RSICVLSKSDS 327 Query: 143 VKPERLLEQAEI 154 + + L+ +I Sbjct: 328 IITQNLININDI 339 >gi|17987833|ref|NP_540467.1| GTP-binding protein EngA [Brucella melitensis bv. 1 str. 16M] gi|225851918|ref|YP_002732151.1| GTP-binding protein EngA [Brucella melitensis ATCC 23457] gi|256044100|ref|ZP_05447011.1| GTP-binding protein EngA [Brucella melitensis bv. 1 str. Rev.1] gi|256112898|ref|ZP_05453814.1| GTP-binding protein EngA [Brucella melitensis bv. 3 str. Ether] gi|256264570|ref|ZP_05467102.1| GTP-binding protein engA [Brucella melitensis bv. 2 str. 63/9] gi|260563458|ref|ZP_05833944.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. 16M] gi|265990512|ref|ZP_06103069.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. Rev.1] gi|265994340|ref|ZP_06106897.1| GTP-binding protein engA [Brucella melitensis bv. 3 str. Ether] gi|26006723|sp|Q8YFH2|DER_BRUME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783140|sp|C0RH89|DER_BRUMB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|17983561|gb|AAL52731.1| gtp-binding protein [Brucella melitensis bv. 1 str. 16M] gi|225640283|gb|ACO00197.1| small GTP-binding protein [Brucella melitensis ATCC 23457] gi|260153474|gb|EEW88566.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. 16M] gi|262765453|gb|EEZ11242.1| GTP-binding protein engA [Brucella melitensis bv. 3 str. Ether] gi|263001296|gb|EEZ13871.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. Rev.1] gi|263094935|gb|EEZ18643.1| GTP-binding protein engA [Brucella melitensis bv. 2 str. 63/9] gi|326408416|gb|ADZ65481.1| GTP-binding protein EngA [Brucella melitensis M28] gi|326538130|gb|ADZ86345.1| small GTP-binding protein [Brucella melitensis M5-90] Length = 483 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 9/166 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V TR R I K + F +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRD--RRIHDAKLYDLKFQVIDTAGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A DS M + + I AD V V+D+ + + + + ++L+ NK Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E + A + + + +SA G G D+ + + L Sbjct: 122 EARGSEAGMYDA----FQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 16/180 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ +A+VG NAGKSTL+N +G + + TR + +I DT Sbjct: 207 DATKPLRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDT 266 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ ++ KL + S I+ A++V +V+D+ + + I DL I + Sbjct: 267 AGMRRKARVQEKLEKLSVADSLRAIRFAEVVIIVLDATIPFEKQDLQIADL---IIREGR 323 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFI------EKTFMVSATKGHGCDDVLNYLCST 185 ++ NK D ++ +R + A++ K + + +S +G G D ++ + T Sbjct: 324 APVIAFNKWDLIE-DRQMVLADLYEKTARLLPQVRGLRAVPISGERGQGIDKLMENVVKT 382 >gi|319941508|ref|ZP_08015835.1| GTP-binding protein engA [Sutterella wadsworthensis 3_1_45B] gi|319804982|gb|EFW01821.1| GTP-binding protein engA [Sutterella wadsworthensis 3_1_45B] Length = 451 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKST NR ++ +IV TR G + +DT G Sbjct: 4 VIALVGRPNVGKSTFFNRLTRSRDAIVADFPGLTRDRQYGQGRVGPGPYIVVDTGGFEPV 63 Query: 84 K-DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 + + + M + I+ AD+V + D+ L + + + + ++L++NK Sbjct: 64 RTEGIVQAMAGQAELAIEEADVVLFLTDARAGLTPQDIRIAQHLRRADRPVVLLVNKA-- 121 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 E L E A+ + + + +VS G G D L+ S LP Sbjct: 122 ---EGLTETAKAEFYELGLGEPHLVSGAHGQGVRDALDLAFSCLP 163 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 6/161 (3%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G NAGKSTL+N VG + I TTR ++ +DT G+ Sbjct: 185 VTLAGRPNAGKSTLINALVGEERVIAFDMPGTTRDAIKIDFEYDGRPYELVDTAGLRKKG 244 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 ++ K + + I+ A++V LVVD+ + + + + L++ +NK D Sbjct: 245 RVFEAVEKFSVVKTLQAIEDANVVILVVDAKEGVSEGDAHIAGYVLEAGRALVVAVNKWD 304 Query: 142 CVKP-ERLLEQAEIANKLVFIE--KTFMVSATKGHGCDDVL 179 + ER ++ KL F+ + +SA K +G + ++ Sbjct: 305 LLDSYERERFNLDLERKLHFLRWARMIRISALKRNGLNHLM 345 >gi|254670450|emb|CBA06089.1| putative GTP-binding protein [Neisseria meningitidis alpha153] Length = 536 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G + I TTR + I E+E + +DT Sbjct: 223 DAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 281 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 282 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 341 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + +NK D + ER + + +I KL F++ K +SA K G D + + + + Sbjct: 342 VAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGIDGLFDSIQAA 395 Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 8/175 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 55 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 114 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS H+ M + + + AD V +VD L + + + + L +NK + Sbjct: 115 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGE 173 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 R + AE + + +++S G G ++ + P P V AD Sbjct: 174 GGN--RAVLAAEFYE--LALGDPYVISGAHGDGVYYLIEEILENFP-EPEVEEAD 223 >gi|75674640|ref|YP_317061.1| GTPase ObgE [Nitrobacter winogradskyi Nb-255] gi|123614167|sp|Q3SVI2|OBG_NITWN RecName: Full=GTPase obg; AltName: Full=GTP-binding protein obg gi|74419510|gb|ABA03709.1| GTP-binding protein, HSR1-related protein [Nitrobacter winogradskyi Nb-255] Length = 358 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 11/173 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 LVG NAGKST +++ AK I + T + G+V ++ + V D PG+ Sbjct: 162 AGLVGLPNAGKSTFLSKVSAAKPKIADYPFTTLHPQL-GVVRVQDREFVLADIPGLIEGA 220 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK-EIAKRSSRL-----ILILN 138 L R ++ ++ +VD+ + + +++ E+ + L I+ LN Sbjct: 221 HEGAGLGDRF-LGHVERCRVLLHLVDAGCDHAGRAYKIVRGEMEAYAGALAEKVEIVALN 279 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKT-FMVSATKGHGCDDVLNYLCSTLPLAP 190 KID V E L +Q + + +KT +VS G G DVL L + AP Sbjct: 280 KIDAVTAEDLKKQRDRLKRAA--KKTPLLVSGVTGEGVQDVLRALVEVIGQAP 330 >gi|23501279|ref|NP_697406.1| GTP-binding protein EngA [Brucella suis 1330] gi|161618354|ref|YP_001592241.1| GTP-binding protein EngA [Brucella canis ATCC 23365] gi|225626893|ref|ZP_03784932.1| small GTP-binding protein [Brucella ceti str. Cudo] gi|254703735|ref|ZP_05165563.1| GTP-binding protein EngA [Brucella suis bv. 3 str. 686] gi|254707885|ref|ZP_05169713.1| GTP-binding protein EngA [Brucella pinnipedialis M163/99/10] gi|254709531|ref|ZP_05171342.1| GTP-binding protein EngA [Brucella pinnipedialis B2/94] gi|254713052|ref|ZP_05174863.1| GTP-binding protein EngA [Brucella ceti M644/93/1] gi|254716595|ref|ZP_05178406.1| GTP-binding protein EngA [Brucella ceti M13/05/1] gi|254718562|ref|ZP_05180373.1| GTP-binding protein EngA [Brucella sp. 83/13] gi|256031025|ref|ZP_05444639.1| GTP-binding protein EngA [Brucella pinnipedialis M292/94/1] gi|256060517|ref|ZP_05450686.1| GTP-binding protein EngA [Brucella neotomae 5K33] gi|256159079|ref|ZP_05456908.1| GTP-binding protein EngA [Brucella ceti M490/95/1] gi|256254428|ref|ZP_05459964.1| GTP-binding protein EngA [Brucella ceti B1/94] gi|256368832|ref|YP_003106338.1| GTP-binding protein EngA [Brucella microti CCM 4915] gi|260168157|ref|ZP_05754968.1| GTP-binding protein EngA [Brucella sp. F5/99] gi|260567011|ref|ZP_05837481.1| GTP-binding protein engA [Brucella suis bv. 4 str. 40] gi|261218394|ref|ZP_05932675.1| GTP-binding protein engA [Brucella ceti M13/05/1] gi|261221596|ref|ZP_05935877.1| GTP-binding protein engA [Brucella ceti B1/94] gi|261315376|ref|ZP_05954573.1| GTP-binding protein engA [Brucella pinnipedialis M163/99/10] gi|261317057|ref|ZP_05956254.1| GTP-binding protein engA [Brucella pinnipedialis B2/94] gi|261320757|ref|ZP_05959954.1| GTP-binding protein engA [Brucella ceti M644/93/1] gi|261324511|ref|ZP_05963708.1| GTP-binding protein engA [Brucella neotomae 5K33] gi|261754380|ref|ZP_05998089.1| GTP-binding protein engA [Brucella suis bv. 3 str. 686] gi|261757615|ref|ZP_06001324.1| GTP-binding protein engA [Brucella sp. F5/99] gi|265983537|ref|ZP_06096272.1| GTP-binding protein engA [Brucella sp. 83/13] gi|265988095|ref|ZP_06100652.1| GTP-binding protein engA [Brucella pinnipedialis M292/94/1] gi|265997559|ref|ZP_06110116.1| GTP-binding protein engA [Brucella ceti M490/95/1] gi|294851760|ref|ZP_06792433.1| ribosome-associated GTPase EngA [Brucella sp. NVSL 07-0026] gi|306837298|ref|ZP_07470181.1| small GTP-binding protein [Brucella sp. NF 2653] gi|306845011|ref|ZP_07477592.1| small GTP-binding protein [Brucella sp. BO1] gi|37999701|sp|Q8G2E8|DER_BRUSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037138|sp|A9M8F4|DER_BRUC2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|23347166|gb|AAN29321.1| GTP-binding protein [Brucella suis 1330] gi|161335165|gb|ABX61470.1| small GTP-binding protein domain [Brucella canis ATCC 23365] gi|225618550|gb|EEH15593.1| small GTP-binding protein [Brucella ceti str. Cudo] gi|255998990|gb|ACU47389.1| GTP-binding protein EngA [Brucella microti CCM 4915] gi|260156529|gb|EEW91609.1| GTP-binding protein engA [Brucella suis bv. 4 str. 40] gi|260920180|gb|EEX86833.1| GTP-binding protein engA [Brucella ceti B1/94] gi|260923483|gb|EEX90051.1| GTP-binding protein engA [Brucella ceti M13/05/1] gi|261293447|gb|EEX96943.1| GTP-binding protein engA [Brucella ceti M644/93/1] gi|261296280|gb|EEX99776.1| GTP-binding protein engA [Brucella pinnipedialis B2/94] gi|261300491|gb|EEY03988.1| GTP-binding protein engA [Brucella neotomae 5K33] gi|261304402|gb|EEY07899.1| GTP-binding protein engA [Brucella pinnipedialis M163/99/10] gi|261737599|gb|EEY25595.1| GTP-binding protein engA [Brucella sp. F5/99] gi|261744133|gb|EEY32059.1| GTP-binding protein engA [Brucella suis bv. 3 str. 686] gi|262552027|gb|EEZ08017.1| GTP-binding protein engA [Brucella ceti M490/95/1] gi|264660292|gb|EEZ30553.1| GTP-binding protein engA [Brucella pinnipedialis M292/94/1] gi|264662129|gb|EEZ32390.1| GTP-binding protein engA [Brucella sp. 83/13] gi|294820349|gb|EFG37348.1| ribosome-associated GTPase EngA [Brucella sp. NVSL 07-0026] gi|306274643|gb|EFM56432.1| small GTP-binding protein [Brucella sp. BO1] gi|306407611|gb|EFM63807.1| small GTP-binding protein [Brucella sp. NF 2653] Length = 483 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 9/166 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V TR R I K + F +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRD--RRIHDAKLYDLKFQVIDTAGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A DS M + + I AD V V+D+ + + + + ++L+ NK Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E + A + + + +SA G G D+ + + L Sbjct: 122 EARGSEAGMYDA----FQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 16/180 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ +A+VG NAGKSTL+N +G + + TR + +I DT Sbjct: 207 DATKPLRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDT 266 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ ++ KL + I+ A++V +V+D+ + + I DL I + Sbjct: 267 AGMRRKARVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQIADL---IIREGR 323 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFI------EKTFMVSATKGHGCDDVLNYLCST 185 ++ NK D ++ +R + A++ K + + +S +G G D ++ + T Sbjct: 324 APVIAFNKWDLIE-DRQMVLADLYEKTARLLPQVRGLRAVPISGERGQGIDKLMENVVKT 382 >gi|300173424|ref|YP_003772590.1| GTP-binding protein EngA [Leuconostoc gasicomitatum LMG 18811] gi|299887803|emb|CBL91771.1| GTP-binding protein EngA [Leuconostoc gasicomitatum LMG 18811] Length = 437 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR G +++IV + TR + + +DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGI-EL 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ IR I AD++ ++ + + K + K ++L +NK+D Sbjct: 64 GDAPFLAEIRAQVELAIDEADVIVMITSGREGVTSADEVVAKMLYKTDKPVVLAINKVD- 122 Query: 143 VKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 PE + Q + + F VS + G G D+L+ + P Sbjct: 123 -NPE--MRQDIYDFYSLGLGDPFPVSGSHGLGLGDLLDEVVKHFP 164 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 17/164 (10%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRG-IVSEKESQIVFLDTPGIFNAK 84 +++G N GKS++VN +G IV+ TTR + V+ + + + +DT G+ Sbjct: 179 SIIGRPNVGKSSIVNAMLGEDRVIVSSIEGTTRDAIDSRFVTPEGDEFIMVDTAGMRKRG 238 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILN 138 Y K + + I +++++ +V+D+ RE ++ E + +I+++N Sbjct: 239 KVYENTEKYSVMRALKAIDNSNVILMVIDAEAGIREQDKHVAGFAHEAGR---AMIIVVN 295 Query: 139 KIDCV-KPERLLEQAE--IANKLVFIEK---TFMVSATKGHGCD 176 K D V K + +++ E I ++ F++ TF VSA G D Sbjct: 296 KWDAVEKDDHTMKEFEDLIRSEFKFLDYAPITF-VSAKTGQRLD 338 >gi|293602680|ref|ZP_06685121.1| tRNA modification GTPase TrmE [Achromobacter piechaudii ATCC 43553] gi|292818871|gb|EFF77911.1| tRNA modification GTPase TrmE [Achromobacter piechaudii ATCC 43553] Length = 450 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 21/175 (12%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V L G N GKS+L+N G ++IVT TTR V + + +DT G+ + Sbjct: 222 VVLAGQPNVGKSSLLNALAGDDIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRETE 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHR---ELKVNIHDLLKEIAKRSSRLILILNKID 141 D+ + I +W I+ AD++ + D+ + EL I L + ++ + NK+D Sbjct: 282 DTVESIGIARTWQEIERADVILHLQDATQPGDELDAQITARLPP----RTPVLKVFNKVD 337 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 ++ E +SA +G G D + L L +A W A+ Sbjct: 338 L-----------LSTAFAPGEGELGISAKRGAGLDALRAAL---LHIAGWNPGAE 378 >gi|258654106|ref|YP_003203262.1| GTP-binding proten HflX [Nakamurella multipartita DSM 44233] gi|258557331|gb|ACV80273.1| GTP-binding proten HflX [Nakamurella multipartita DSM 44233] Length = 487 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 V++ G TNAGKS+L+NR A V + T R + DT G Sbjct: 268 AVSIAGYTNAGKSSLLNRLTDAGVLVEDALFATLDPTTRRSRTTDGRVYTLTDTVGFV-- 325 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDS---HRELKVN-IHDLLKEIAKRSSRLILIL 137 + H+L+ R + I AD++ VVD + E +V+ + ++L EI S I+++ Sbjct: 326 RHLPHQLVESFRSTLEEIGDADLLLHVVDGSDENPEAQVSAVREVLGEIDALSVAEIIVV 385 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 NKID L + VF VSA G G D++ + + + LP Sbjct: 386 NKIDAADEMTLTRLRHVLPGAVF------VSARTGAGIDELRDRIAAALP 429 >gi|148238904|ref|YP_001224291.1| GTP-binding protein EngA [Synechococcus sp. WH 7803] gi|166225928|sp|A5GJ79|DER_SYNPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|147847443|emb|CAK22994.1| GTP-binding protein engA [Synechococcus sp. WH 7803] Length = 455 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 8/166 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTT--RSIVRGIVSEKESQIVFLDTPGIFN 82 VA++G N GKSTLVNR ++ +IV + T R+ G +++ ++V DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCHSREAIVHDEPGVTRDRTYQDGYWGDRDFKVV--DTGGLVF 63 Query: 83 AKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS IR + ++ A + ++VD + + + + + + + +L +NK Sbjct: 64 DDDSEFLPEIREQAALALEEASVALVIVDGQQGVTASDEAIAEFLRGQRCPALLAVNK-- 121 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 C PE+ L A L E + +SA G G ++L+ + + LP Sbjct: 122 CESPEQGLAMAAEFWSLGLGEP-YPISAIHGAGTAELLDQVLTYLP 166 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 8/163 (4%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L+N G + +IV+ TTR + + + +DT GI + Sbjct: 180 LAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSLVRENRPWRLVDTAGIRRRR 239 Query: 85 DSYHK---LMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 + I S+ I+ +D+ LV+D+ + L I + ++++NK D Sbjct: 240 SVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEEDGRACVVVVNKWD 299 Query: 142 CVKPERLLEQA---EIANKLVFIEKTFMV--SATKGHGCDDVL 179 V+ + A E+ KL F++ M+ SA G D + Sbjct: 300 AVEKDSHTMTAMEKELRAKLYFLDWAPMLFTSALTGQRVDSIF 342 >gi|116329464|ref|YP_799184.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329932|ref|YP_799650.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282295|sp|Q04W28|MNME_LEPBJ RecName: Full=tRNA modification GTPase mnmE gi|122282756|sp|Q04XE4|MNME_LEPBL RecName: Full=tRNA modification GTPase mnmE gi|116122208|gb|ABJ80251.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123621|gb|ABJ74892.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 456 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + L G N GKS+L+N +G SI++ TTR + + + + +DT G+ + Sbjct: 223 IVLYGEPNTGKSSLMNVLLGKDRSIISEIPGTTRDYISEEILLEGIPVRLVDTAGVRETE 282 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL---ILILNKID 141 D +L I S + ADI ++D ++ + K IAK RL IL+ NKID Sbjct: 283 DHIERLGIERSEKEFQSADIRLFLIDVSKK-----EEWKKFIAKAKGRLEGSILVANKID 337 >gi|147919506|ref|YP_686754.1| GTP-binding protein [uncultured methanogenic archaeon RC-I] gi|110622150|emb|CAJ37428.1| conserved GTP-binding protein [uncultured methanogenic archaeon RC-I] Length = 425 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 87/185 (47%), Gaps = 30/185 (16%) Query: 25 VALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 VAL G TNAGKSTL+N VG AK + T V TTR + G +++ DT G Sbjct: 191 VALAGYTNAGKSTLMNALVGETVVAKDQLFTTLVPTTRMMEAG-----RRRVLLTDTVGF 245 Query: 81 FNAKDSYHKLMIRLSWSTIKH---ADIVCLVVDSHRELKVNI------HDLL-KEIAKRS 130 KD H M+ ST++ AD++ LVVD+ +V + HD L +I Sbjct: 246 I--KDLPH-FMVEAFRSTLEEIYLADLIILVVDASEPPEVVLEKLATCHDTLWGKIGPIP 302 Query: 131 SRLILILNKIDCVK-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLA 189 +I LNKID + P LE+ E A K VSA G G +++ + LP Sbjct: 303 --VITALNKIDKIDLP--TLERTEAAIK-NLAPHPVAVSARTGDGLEELRATVEFFLP-- 355 Query: 190 PWVYS 194 WV + Sbjct: 356 KWVSA 360 >gi|149204767|ref|ZP_01881730.1| GTP-binding protein HflX [Roseovarius sp. TM1035] gi|149141736|gb|EDM29789.1| GTP-binding protein HflX [Roseovarius sp. TM1035] Length = 424 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI-VSEKESQIVFLDTPGIFN 82 VALVG TNAGKSTL NR GA V T +R + + E +++ DT G + Sbjct: 204 VVALVGYTNAGKSTLFNRLTGADVMAKDMLFATLDPTMRRVNLPEGGPEVILSDTVGFIS 263 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVD-SHRELKVNIHD---LLKEIA-KRSSRLILIL 137 + R + + AD++C V D SH E D +L+ + + I I Sbjct: 264 DLPTELVAAFRATLEEVLSADLICHVRDISHPETVSQSRDVATILESLGVSDKTPQIEIW 323 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID + PE +A + E +SA G G D+++ + L Sbjct: 324 NKIDRL-PEDA--RAAAVTQAARQEDVIAISAISGQGLSDLISAIGDKL 369 >gi|122701465|emb|CAL88122.1| GTPase [Helicobacter pylori] Length = 170 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 17/170 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 +A++G N GKS+L N +++I + TTR I + ++ ++ LDT G+ AK Sbjct: 10 IAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM--AK 67 Query: 85 DSYHKLMIR-LSWSTIKHADIVCLVVD-----SHRELKVNIHDLLKEIAKRSSRLILILN 138 D+ I+ L+ + +D++ VVD S ++K L +E+ K + L++N Sbjct: 68 DALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIK-----LFREVFKTNPNCFLVIN 122 Query: 139 KIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 KID K ++ A + K+F +S + G +++ + + L L Sbjct: 123 KIDNDKE----KERSYAFSSFGMPKSFNISVSHNRGISALIDAILNALNL 168 >gi|187924514|ref|YP_001896156.1| GTP-binding protein EngA [Burkholderia phytofirmans PsJN] gi|238689579|sp|B2SXS6|DER_BURPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187715708|gb|ACD16932.1| small GTP-binding protein [Burkholderia phytofirmans PsJN] Length = 445 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 13/184 (7%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 + +R +A+VG N GKSTL+N VG + I TTR + +D Sbjct: 174 EKQTRGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLID 233 Query: 77 TPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL 133 T G+ ++ K + + +I A++V L++D+ +++ + + ++ L Sbjct: 234 TAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDAHIAGFVVEQGRAL 293 Query: 134 ILILNKIDCVKPE-RLLEQAEIANKLVFIE--KTFMVSATKGHG-------CDDVLNYLC 183 ++ +NK D + P R +A++ KL F++ K +SA + G DD Sbjct: 294 VVGVNKWDGLDPHVRERTKADLERKLKFLDFAKFHFISAAEKTGIGPLMRSVDDAYAAAM 353 Query: 184 STLP 187 + LP Sbjct: 354 AKLP 357 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 7/125 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN- 82 +ALVG N GKSTL NR + ++V TR G + + +DT G Sbjct: 4 VIALVGRPNVGKSTLFNRLTRTRDALVADLPGLTRDRHYGEGRAGDRPYLVVDTGGFEPV 63 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKV---NIHDLLKEIAKRSSRLILILNK 139 AKD M R + ++ +DIV +VD L +I D L+++ + + L++NK Sbjct: 64 AKDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGR---PIFLVVNK 120 Query: 140 IDCVK 144 + +K Sbjct: 121 AEGMK 125 >gi|86136756|ref|ZP_01055334.1| tRNA modification GTPase [Roseobacter sp. MED193] gi|85826080|gb|EAQ46277.1| tRNA modification GTPase [Roseobacter sp. MED193] Length = 428 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 47/96 (48%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA++GA N GKSTL+N G + +I + TTR ++ + + LDT G+ + Sbjct: 216 VAIIGAPNVGKSTLLNMLAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTD 275 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 D + I L+ + AD+ +V+ + + + Sbjct: 276 DHVEGIGIELARKRAEQADLRVFLVEPDEAIDLEMR 311 >gi|330686012|gb|EGG97635.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU121] Length = 436 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 16/169 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 IVAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGI-EI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 D+ + IR I+ AD++ +V+ L + + + + K ++L +NK+D Sbjct: 64 GDAPFQTQIRAQAEIAIEEADVIVFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDN 123 Query: 143 VKPERLLEQAEIANKL-----VFIEKTFMVSATKGHGCDDVLNYLCSTL 186 V E+ N + + + + +S + G G D+L+ + Sbjct: 124 V---------EMRNDIYDFYSLGFGEPYPISGSHGLGLGDLLDAVVENF 163 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N GKS+LVN +G + IV++ TTR V S V +DT G+ Sbjct: 178 LSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYDGQDYVLIDTAGMRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I+ +++V +V+D+ + + + + +++++NK D Sbjct: 238 KVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDKRVAGYAHEEGKAIVIVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 TVE 300 >gi|294660274|ref|NP_852940.2| putative GTPase EngA [Mycoplasma gallisepticum str. R(low)] gi|298286805|sp|Q7NBV2|DER_MYCGA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|284811930|gb|AAP56508.2| predicted GTPase EngA [Mycoplasma gallisepticum str. R(low)] gi|284930404|gb|ADC30343.1| predicted GTPase EngA [Mycoplasma gallisepticum str. R(high)] Length = 456 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 4/157 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKSTL NR + +++IV TR + G V + +DT G+ Sbjct: 4 VAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTTES 63 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH-DLLKEIAKRSSRLILILNKIDCV 143 D + + + + I ADI+ V + + H ++ ++I +LNKI+ Sbjct: 64 DVFQRAIEQQVQFAIDEADIILFVCSYKEGINADDHYAAKLLKKHKNKKIIFVLNKIENQ 123 Query: 144 KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 ++L + + + K ++SA G D+L+ Sbjct: 124 NKDQLNLSSYFS---LGFGKPMIISAEHAIGIGDLLD 157 >gi|258623500|ref|ZP_05718502.1| GTP-binding protein HflX [Vibrio mimicus VM573] gi|262163593|ref|ZP_06031336.1| GTP-binding protein HflX [Vibrio mimicus VM223] gi|262172554|ref|ZP_06040232.1| GTP-binding protein HflX [Vibrio mimicus MB-451] gi|258584212|gb|EEW08959.1| GTP-binding protein HflX [Vibrio mimicus VM573] gi|261893630|gb|EEY39616.1| GTP-binding protein HflX [Vibrio mimicus MB-451] gi|262027960|gb|EEY46622.1| GTP-binding protein HflX [Vibrio mimicus VM223] Length = 429 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 14/170 (8%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 ++LVG TNAGKSTL NR A V T +R I V DT G Sbjct: 199 TISLVGYTNAGKSTLFNRITEAGVYAADQLFATLDPTLRKIDLVDVGPAVLADTVGFI-- 256 Query: 84 KDSYHKLM--IRLSWSTIKHADIVCLVVDSH----RELKVNIHDLLKEIAKRSSRLILIL 137 + H L+ + + + ADI+ VVD+ RE + +L+EI +L++ Sbjct: 257 RHLPHDLVAAFKATLQETQEADILLHVVDASDDRFRENIQAVETVLQEIDAHEVPTLLVM 316 Query: 138 NKIDCVKPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 NKID ++ EQA I I + +SA +G G + + L L Sbjct: 317 NKIDSLE-----EQAPRIERDDEGIPRVVWISAMQGSGIELLFQALSERL 361 >gi|254693167|ref|ZP_05154995.1| GTP-binding protein EngA [Brucella abortus bv. 3 str. Tulya] gi|261213405|ref|ZP_05927686.1| GTP-binding protein engA [Brucella abortus bv. 3 str. Tulya] gi|260915012|gb|EEX81873.1| GTP-binding protein engA [Brucella abortus bv. 3 str. Tulya] Length = 483 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 9/166 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V TR R I K + F +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRD--RRIHDAKLYDLKFQVIDTAGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A DS M + + I AD V V+D+ + + + + ++L+ NK Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E + A + + + +SA G G D+ + + L Sbjct: 122 EARGSEAGMYDA----FQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 16/180 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ +A+VG NAGKSTL+N +G + + TR + +I DT Sbjct: 207 DATKPLRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKINLFDT 266 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ ++ KL + S I+ A++V +V+D+ + + I DL I + Sbjct: 267 AGMRRKARVQEKLEKLSVADSLRAIRFAEVVIIVLDATIPFEKQDLQIADL---IIREGR 323 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFI------EKTFMVSATKGHGCDDVLNYLCST 185 ++ NK D ++ +R + A++ K + + +S +G G D ++ + T Sbjct: 324 APVIAFNKWDLIE-DRQMVLADLYEKTARLLPQVRGLRAVPISGERGQGIDKLMENVVKT 382 >gi|62289366|ref|YP_221159.1| GTP-binding protein EngA [Brucella abortus bv. 1 str. 9-941] gi|82699291|ref|YP_413865.1| GTP-binding protein EngA [Brucella melitensis biovar Abortus 2308] gi|189023620|ref|YP_001934388.1| GTP-binding protein EngA [Brucella abortus S19] gi|237814855|ref|ZP_04593853.1| small GTP-binding protein [Brucella abortus str. 2308 A] gi|254688683|ref|ZP_05151937.1| GTP-binding protein EngA [Brucella abortus bv. 6 str. 870] gi|254696810|ref|ZP_05158638.1| GTP-binding protein EngA [Brucella abortus bv. 2 str. 86/8/59] gi|254729717|ref|ZP_05188295.1| GTP-binding protein EngA [Brucella abortus bv. 4 str. 292] gi|256256930|ref|ZP_05462466.1| GTP-binding protein EngA [Brucella abortus bv. 9 str. C68] gi|260545880|ref|ZP_05821621.1| GTP-binding protein engA [Brucella abortus NCTC 8038] gi|260754159|ref|ZP_05866507.1| GTP-binding protein engA [Brucella abortus bv. 6 str. 870] gi|260757379|ref|ZP_05869727.1| GTP-binding protein engA [Brucella abortus bv. 4 str. 292] gi|260761203|ref|ZP_05873546.1| GTP-binding protein engA [Brucella abortus bv. 2 str. 86/8/59] gi|260883184|ref|ZP_05894798.1| GTP-binding protein engA [Brucella abortus bv. 9 str. C68] gi|297247781|ref|ZP_06931499.1| ribosome-associated GTPase EngA [Brucella abortus bv. 5 str. B3196] gi|75505338|sp|Q57EY6|DER_BRUAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123546332|sp|Q2YM98|DER_BRUA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691492|sp|B2S9M3|DER_BRUA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|62195498|gb|AAX73798.1| GTP-binding protein [Brucella abortus bv. 1 str. 9-941] gi|82615392|emb|CAJ10361.1| Uridine kinase:ATP/GTP-binding site motif A (P-loop):Ras GTPase superfamily:GTP-binding protein, HSR1-related:Small GTP-bindi [Brucella melitensis biovar Abortus 2308] gi|189019192|gb|ACD71914.1| GTP-binding protein EngA [Brucella abortus S19] gi|237789692|gb|EEP63902.1| small GTP-binding protein [Brucella abortus str. 2308 A] gi|260097287|gb|EEW81162.1| GTP-binding protein engA [Brucella abortus NCTC 8038] gi|260667697|gb|EEX54637.1| GTP-binding protein engA [Brucella abortus bv. 4 str. 292] gi|260671635|gb|EEX58456.1| GTP-binding protein engA [Brucella abortus bv. 2 str. 86/8/59] gi|260674267|gb|EEX61088.1| GTP-binding protein engA [Brucella abortus bv. 6 str. 870] gi|260872712|gb|EEX79781.1| GTP-binding protein engA [Brucella abortus bv. 9 str. C68] gi|297174950|gb|EFH34297.1| ribosome-associated GTPase EngA [Brucella abortus bv. 5 str. B3196] Length = 483 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 9/166 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V TR R I K + F +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRD--RRIHDAKLYDLKFQVIDTAGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A DS M + + I AD V V+D+ + + + + ++L+ NK Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E + A + + + +SA G G D+ + + L Sbjct: 122 EARGSEAGMYDA----FQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 16/180 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ +A+VG NAGKSTL+N +G + + TR + +I DT Sbjct: 207 DATKPLRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKINLFDT 266 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ ++ KL + S I+ A++V +V+D+ + + I DL I + Sbjct: 267 AGMRRKARVQEKLEKLSVADSLRAIRFAEVVIIVLDATIPFEKQDLQIADL---IIREGR 323 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFI------EKTFMVSATKGHGCDDVLNYLCST 185 ++ NK D ++ +R + A++ K + + +S +G G D ++ + T Sbjct: 324 APVIAFNKWDLIE-DRQMVLADLYEKTARLLPQVRGLRAVPISGERGQGIDKLMENVVKT 382 >gi|320449861|ref|YP_004201957.1| GTP-binding protein HflX [Thermus scotoductus SA-01] gi|320150030|gb|ADW21408.1| GTP-binding protein HflX [Thermus scotoductus SA-01] Length = 552 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 22/172 (12%) Query: 24 CVALVGATNAGKSTLVNRFV-----GAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTP 78 +A+VG TNAGK+TL+ G T + T R + G+ +++F DT Sbjct: 377 LIAVVGYTNAGKTTLLQALARGGEPGEDKLFATLRPLTRRGFLPGV-----GEVLFTDTV 431 Query: 79 GIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLI 134 G R + ++ AD++ V+D+ E + + +LL E+ + R + Sbjct: 432 GFIRQMPKELLTAFRATLEEVREADLLIHVLDASEEGAMGRYRVVEELLAELGVEAPR-V 490 Query: 135 LILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 L L+K+D P L + KL + VSA KG G ++ L L Sbjct: 491 LALSKVDRAAPYDLF---YLREKLGGVP----VSALKGTGVSELREALAEAL 535 >gi|315926702|gb|EFV06081.1| small GTP-binding domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 460 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L+G N GKS+L NR +++I + TTR + + + + +D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGL-DE 61 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K + + + K +DI+ +VD + K + L++NK+D Sbjct: 62 SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNK 121 Query: 144 KPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K E E+A E AN +++ F +S T G D++ +L Sbjct: 122 KDE---ERAWEFAN--FGVKEIFNLSVTHNVGLDELYEWL 156 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L+N V + S+V+ TT V + K+ I F+DT GI Sbjct: 198 VGIVGRVNVGKSSLLNTLVKQERSVVSSIAGTTIDPVNESIVYKDKVIEFVDTAGIRKRG 257 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + + + + H+ I LV+D+H EL I L +AK +I++LNK Sbjct: 258 KIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGL---VAKHYLGVIIVLNK 314 Query: 140 ID 141 D Sbjct: 315 WD 316 >gi|259046866|ref|ZP_05737267.1| ribosome-associated GTPase EngA [Granulicatella adiacens ATCC 49175] gi|259036489|gb|EEW37744.1| ribosome-associated GTPase EngA [Granulicatella adiacens ATCC 49175] Length = 437 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 16/170 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE---SQIVFLDTPGI 80 +A+VG N GKST+ NR VG ++SIV TR I SE E +DT GI Sbjct: 5 VIAVVGRPNVGKSTIFNRIVGERISIVEDIAGVTRD---RIYSEGEWLGHSFNIIDTGGI 61 Query: 81 FNAKDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNK 139 + D IR+ ++ AD++ + + + K + + + ++L +NK Sbjct: 62 -DITDEPFMSNIRMQAEIAMEEADVIIFLTSVKEGVTTTDEHIAKLLYRTNKPVLLAVNK 120 Query: 140 IDCVKPERLLEQAEIAN--KLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +D PE ++EI + L F E F +S + G G D+L+ P Sbjct: 121 VD--NPEL---RSEIFDFYALGFGEP-FPISGSHGLGLGDLLDAAVKAFP 164 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIV-FLDTPGIFNAK 84 + +G N GKS+LVN +G + IV++ TTR + ++E + +DT GI Sbjct: 179 SFIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAIDTTFEDEEGTVFKMIDTAGIRKKG 238 Query: 85 ---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 +S K + + I+ +DIVC+V+++ ++ + + +++++NK D Sbjct: 239 RVFESTEKYSVLRALRAIERSDIVCVVLNAEEGIQEQDKKIAGYAHEAGKGVVILVNKWD 298 Query: 142 CVK 144 ++ Sbjct: 299 TLE 301 >gi|253576866|ref|ZP_04854191.1| GTPase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843733|gb|EES71756.1| GTPase [Paenibacillus sp. oral taxon 786 str. D14] Length = 420 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 12/169 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTH-KVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +A+ G TN GKS++VN G ++++V+ + TT + + + +V +DT G+ Sbjct: 14 IAVFGRTNVGKSSVVNALTGQEIAVVSPVRGTTTDPVYKAMELLPLGPVVLIDTAGL--- 70 Query: 84 KDSYHKLMIRLSWST---IKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 D +L R T I AD+ LV+D+ +LL E+ +R ++ ++NK+ Sbjct: 71 -DDEGELGERRKQKTRELIHRADLALLVIDALAGPDDFYRELLAELKQRKIPVVGVVNKV 129 Query: 141 DCV--KPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 D + R AE+ +L + SA G G ++ + + LP Sbjct: 130 DALLDTDARAAVLAEVKAQLGL--ECVAFSALDGSGVPELKRAIVAALP 176 >gi|229822882|ref|ZP_04448952.1| hypothetical protein GCWU000282_00172 [Catonella morbi ATCC 51271] gi|229787695|gb|EEP23809.1| hypothetical protein GCWU000282_00172 [Catonella morbi ATCC 51271] Length = 437 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 5/129 (3%) Query: 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIFNAKD 85 +G N GKS+LVN + + IV++ TTR V +++E ++ +DT GI Sbjct: 180 FIGRPNVGKSSLVNAILKEERVIVSNIEGTTREAVDTHFTDEEGTRYTMIDTAGIRKRGK 239 Query: 86 SY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC 142 Y K + + S I+ +DIVCLV+D+ ++ + + +++++NK D Sbjct: 240 VYENTEKYSVLRAMSAIERSDIVCLVLDAETGIREQDKKVAGYAYEAGKGMVILVNKWDA 299 Query: 143 V-KPERLLE 150 V K ++L E Sbjct: 300 VDKSDKLFE 308 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 18/171 (10%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VALVG N GKST+ NR VG ++SIV TR + + +DT GI Sbjct: 5 TVALVGRPNVGKSTIFNRLVGERLSIVEDYPGVTRDRIYATGKWLGREFRVIDTGGIDMI 64 Query: 84 KDSYHKLMIRLSWS---TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR----LILI 136 + LM ++ + ++ AD++ + ++ + D + IA R R ++L Sbjct: 65 DEP---LMDQVRYQADIAMEEADVIVFLT----SMQEGLTDADEAIAHRLHRTNKPVVLA 117 Query: 137 LNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLP 187 +NK D PE + Q + + +S + G G D+L+ + S P Sbjct: 118 VNKAD--NPE--MRQMVYDFYALGHGDPYPISGSHGTGLGDLLDAVVSHFP 164 >gi|163842662|ref|YP_001627066.1| GTP-binding protein EngA [Brucella suis ATCC 23445] gi|189037139|sp|B0CK66|DER_BRUSI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163673385|gb|ABY37496.1| small GTP-binding protein domain [Brucella suis ATCC 23445] Length = 483 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 9/166 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVF--LDTPGIF 81 +A+VG N GKSTL NR VG K+++V TR R I K + F +DT G+ Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRD--RRIHDAKLYDLKFQLIDTAGLE 61 Query: 82 N-AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKI 140 A DS M + + I AD V V+D+ + + + + ++L+ NK Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKA 121 Query: 141 DCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTL 186 + E + A + + + +SA G G D+ + + L Sbjct: 122 EARGSEAGMYDA----FQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 16/180 (8%) Query: 18 DNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDT 77 D ++ +A+VG NAGKSTL+N +G + + TR + +I DT Sbjct: 207 DATKPLRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDT 266 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDS---HRELKVNIHDLLKEIAKRSS 131 G+ ++ KL + I+ A++V +V+D+ + + I DL I + Sbjct: 267 AGMRRKARVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQIADL---IIREGR 323 Query: 132 RLILILNKIDCVKPERLLEQAEIANKLVFI------EKTFMVSATKGHGCDDVLNYLCST 185 ++ NK D ++ +R + A++ K + + +S +G G D ++ + T Sbjct: 324 APVIAFNKWDLIE-DRQMVLADLYEKTARLLPQVRGLRAVPISGERGQGIDKLMENVVKT 382 >gi|161869787|ref|YP_001598955.1| GTP-binding protein EngA [Neisseria meningitidis 053442] gi|161595340|gb|ABX73000.1| GTP-binding protein engA [Neisseria meningitidis 053442] Length = 536 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 8/169 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G + I TTR + I E+E + +DT Sbjct: 223 DAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 281 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 282 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 341 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLN 180 + +NK D + ER + + +I KL F++ K +SA K G D + + Sbjct: 342 VAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGIDGLFD 390 Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 8/175 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 55 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 114 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS H+ M + + + AD V +VD L + + + + L +NK + Sbjct: 115 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGE 173 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 R + AE + + +++S G G ++ + T P P AD Sbjct: 174 GGN--RAVLAAEFYE--LALGDPYVISGAHGDGVYYLIEDILETFP-EPEAEEAD 223 >gi|126179643|ref|YP_001047608.1| small GTP-binding protein [Methanoculleus marisnigri JR1] gi|125862437|gb|ABN57626.1| small GTP-binding protein [Methanoculleus marisnigri JR1] Length = 371 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG 79 S V LVG + GKSTL+NR G +S TT S++ G + + ++I LD PG Sbjct: 61 SGDATVVLVGFPSVGKSTLLNRLTGDDISATAAYAFTTVSVIPGSMEHRGAKIQVLDIPG 120 Query: 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEI 126 + A + K + + ++ AD++ ++VD E ++ LL+E+ Sbjct: 121 LI-AGAAMGKGRGKEVIAVVRSADLILVLVDVFNEKHTDV--LLREL 164 >gi|42522382|ref|NP_967762.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100] gi|81829281|sp|Q6MPP2|ENGB_BDEBA RecName: Full=Probable GTP-binding protein EngB gi|39574914|emb|CAE78755.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100] Length = 200 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 12/165 (7%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 VA+ G +NAGKS+ +N K++ V+ TR + E + V +D PG F A Sbjct: 34 VAIAGRSNAGKSSFINALTKNKIAKVSSTPGKTRLLN---FFELDQSYVMVDMPGYGFAA 90 Query: 84 KDS-----YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA-KRSSRLILIL 137 + +H+ MI + + LV+D R + +LLKE + +R L ++L Sbjct: 91 RSGDEMREWHR-MIETYLMNREQLRGLLLVMDIRRSWTED-EELLKEFSERRGFPLAVVL 148 Query: 138 NKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K D + ++L+ K + F VSA K G D V +Y+ Sbjct: 149 TKADKMSRSQMLQAVAKVKKASGLSAVFGVSALKKEGQDAVEDYI 193 >gi|304387839|ref|ZP_07370013.1| ribosome-associated GTPase EngA [Neisseria meningitidis ATCC 13091] gi|304338104|gb|EFM04240.1| ribosome-associated GTPase EngA [Neisseria meningitidis ATCC 13091] Length = 536 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G + I TTR + I E+E + +DT Sbjct: 223 DAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 281 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 282 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 341 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + +NK D + ER + + +I KL F++ K +SA K G D + + + + Sbjct: 342 VAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGIDGLFDSIQAA 395 Score = 39.3 bits (90), Expect = 0.71, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 8/175 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 55 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 114 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS H+ M + + + AD V +VD L + + + + L +NK + Sbjct: 115 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGE 173 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 R + AE + + +++S G G ++ + T P P AD Sbjct: 174 GGN--RAVLAAEFYE--LALGDPYVISGAHGDGVYYLIEDILETFP-EPEAEEAD 223 >gi|289523590|ref|ZP_06440444.1| ribosome biogenesis GTP-binding protein YlqF [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503282|gb|EFD24446.1| ribosome biogenesis GTP-binding protein YlqF [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 272 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 9/100 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 VA+VG N GKS L+N +G K S KV I RG+ + ++ +D+PGI + K Sbjct: 114 VAIVGIPNVGKSMLLNALIGKKAS----KVGGIPGITRGVSWYRSGNLLVVDSPGILDPK 169 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLK 124 + + + L+W AD VV H L + + + L+ Sbjct: 170 -ADRETHVMLTWLGCSKAD----VVGDHETLALQLLEFLR 204 >gi|291613888|ref|YP_003524045.1| GTP-binding proten HflX [Sideroxydans lithotrophicus ES-1] gi|291584000|gb|ADE11658.1| GTP-binding proten HflX [Sideroxydans lithotrophicus ES-1] Length = 380 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 10/127 (7%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES--QIVFLDTPGIF 81 V++VG TNAGKSTL NR A V + T + R I E +S Q+V DT G Sbjct: 199 SVSIVGYTNAGKSTLFNRLTNANVYVANQLFATLDTTARKIFLEGDSHRQVVLSDTVGFI 258 Query: 82 NAKDSYHKLM--IRLSWSTIKHADIVCLVVDSHRELK----VNIHDLLKEIAKRSSRLIL 135 + H L+ R + AD++ VVD + + ++ +L EI + I+ Sbjct: 259 --RHLPHGLVAAFRSTLEETAQADLLLHVVDVNSPERHDQVAEVNKVLAEIGAQHIPQIV 316 Query: 136 ILNKIDC 142 + NKID Sbjct: 317 VYNKIDL 323 >gi|300771631|ref|ZP_07081506.1| GTP-binding protein HflX [Sphingobacterium spiritivorum ATCC 33861] gi|300761620|gb|EFK58441.1| GTP-binding protein HflX [Sphingobacterium spiritivorum ATCC 33861] Length = 396 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 11/128 (8%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFL--DTPGIFN 82 VALVG TN GKST++N + V I T + VR +V + + FL DT G F Sbjct: 206 VALVGYTNVGKSTIMNMISKSDVLIENKLFATLDTTVRKVVID---NLPFLLSDTVG-FI 261 Query: 83 AKDSYHKLM-IRLSWSTIKHADIVCLVVD-SHRELKVNIH---DLLKEIAKRSSRLILIL 137 K +H + + + ++ AD++ VVD SH + +IH + LK++ +I I Sbjct: 262 RKLPHHLVECFKSTLDEVREADVLIHVVDISHPNFEDHIHAVNETLKDLGALDKPVITIF 321 Query: 138 NKIDCVKP 145 NKID KP Sbjct: 322 NKIDAYKP 329 >gi|116494828|ref|YP_806562.1| ribosome biogenesis GTP-binding protein YsxC [Lactobacillus casei ATCC 334] gi|191638335|ref|YP_001987501.1| ribosome biogenesis GTP-binding protein YsxC [Lactobacillus casei BL23] gi|239631580|ref|ZP_04674611.1| GTPase EngB [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066389|ref|YP_003788412.1| putative GTPase [Lactobacillus casei str. Zhang] gi|122263754|sp|Q039K2|ENGB_LACC3 RecName: Full=Probable GTP-binding protein EngB gi|238693035|sp|B3WE42|ENGB_LACCB RecName: Full=Probable GTP-binding protein EngB gi|116104978|gb|ABJ70120.1| Predicted GTPase [Lactobacillus casei ATCC 334] gi|190712637|emb|CAQ66643.1| Probable GTP-binding protein engB [Lactobacillus casei BL23] gi|239526045|gb|EEQ65046.1| GTPase EngB [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438796|gb|ADK18562.1| Predicted GTPase [Lactobacillus casei str. Zhang] gi|327382363|gb|AEA53839.1| Ribosome biogenesis GTP-binding protein YsxC [Lactobacillus casei LC2W] gi|327385563|gb|AEA57037.1| Ribosome biogenesis GTP-binding protein YsxC [Lactobacillus casei BD-II] Length = 198 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 18/176 (10%) Query: 25 VALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 +A +G +N GKS+L+N+ + A+ S V K QT + +S++ F+D PG Sbjct: 26 IAFLGRSNVGKSSLINKLIQRKAMARTSGVPGKTQTLN------FYDLDSRLFFVDVPGY 79 Query: 81 FNAKDS-----YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 AK S MI +T + V L+VDS E + + + + R ++ Sbjct: 80 GYAKVSKTARAKFAAMIETYLTTRQPLRGVVLLVDSRHEPTADDISMYQYLKYYQLRTLV 139 Query: 136 ILNKID-CVKPERLLEQAEIANKLVF--IEKTFMVSATKGHGCDDVLNYLCSTLPL 188 + KID K +RL +I +L + + SAT G G + V ++L T L Sbjct: 140 VATKIDKTPKSKRLHVAKQIKQRLDLNQTDDVILFSATTGEGYEAVWSWLEQTAGL 195 >gi|332799467|ref|YP_004460966.1| GTPase obg [Tepidanaerobacter sp. Re1] gi|332697202|gb|AEE91659.1| GTPase obg [Tepidanaerobacter sp. Re1] Length = 422 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 28/184 (15%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE---KESQIVFLDTPGIF 81 V L+G NAGKSTL++R AK I + TT S G+V K S V D PG+ Sbjct: 161 VGLIGFPNAGKSTLLSRMTSAKPKIADYPF-TTLSPNLGVVDPGLGKGSSFVLADIPGLI 219 Query: 82 NAKDSYHKLMIRLSWSTIKHADIVCLVV------DSHRELKVNIHDLLKEIAKRSSRL-- 133 L + ++H + L+V R+ + + +E+ K S L Sbjct: 220 EGAHEGQG----LGYEFLRHVERTRLLVHVLDMSGIERDPLKGFYAINQELVKYSKELSE 275 Query: 134 ---ILILNKIDCVKPERLLEQAEIANKLVFIEK---TFM-VSATKGHGCDDVLNYLCSTL 186 +++ NK+D K + E +I + IEK T M VS GHG +L Y+ L Sbjct: 276 KPQVVVANKMDLPKAQ---ENYKIIKPI--IEKSGYTIMPVSGATGHGIKQLLQYIGEML 330 Query: 187 PLAP 190 P Sbjct: 331 SKIP 334 >gi|57237441|ref|YP_178454.1| GTP-binding protein EngA [Campylobacter jejuni RM1221] gi|86149131|ref|ZP_01067363.1| GTPase family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597436|ref|ZP_01100671.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218562044|ref|YP_002343823.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|26006744|sp|Q9PIB6|DER_CAMJE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81819560|sp|Q5HW81|DER_CAMJR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|57166245|gb|AAW35024.1| GTPase family protein [Campylobacter jejuni RM1221] gi|85840489|gb|EAQ57746.1| GTPase family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190497|gb|EAQ94471.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359750|emb|CAL34536.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925657|gb|ADC28009.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni IA3902] gi|315057809|gb|ADT72138.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni S3] Length = 460 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L+G N GKS+L NR +++I + TTR + + + + +D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGL-DE 61 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 D K + + + K +DI+ +VD + K + L++NK+D Sbjct: 62 SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNK 121 Query: 144 KPERLLEQA-EIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K E E+A E AN +++ F +S T G D++ +L Sbjct: 122 KDE---ERAWEFAN--FGVKEIFNLSVTHNVGLDELYEWL 156 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 V +VG N GKS+L+N V + S+V+ TT V V K+ I F+DT GI Sbjct: 198 VGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRG 257 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + + + + H+ I LV+D+H EL I L +AK +I++LNK Sbjct: 258 KIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGL---VAKHYLGVIIVLNK 314 Query: 140 ID 141 D Sbjct: 315 WD 316 >gi|213961763|ref|ZP_03390029.1| ribosome-associated GTPase EngA [Capnocytophaga sputigena Capno] gi|213955552|gb|EEB66868.1| ribosome-associated GTPase EngA [Capnocytophaga sputigena Capno] Length = 434 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRKAK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I+H+D+ L++D+ R + ++ +A+R+ + I+IL NK D Sbjct: 238 VKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFESQDANIF-WLAQRNRKGIVILVNKWD 296 Query: 142 CVKPE 146 V+ E Sbjct: 297 LVEKE 301 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 7/169 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR + + +IV TR G +DT G + Sbjct: 2 SAIVAVVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNK 139 DS+ K + + I AD + +V+ L + + + E+ ++ + IL+ +NK Sbjct: 62 AGGDDSFEKEINKQVALAIDEADAIIFMVNVEEGL-TGMDEAVSEMLRKCHKPILVAVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +D + + + E + +S+ G G ++L+ L + LP+ Sbjct: 121 VDSNNRRNDMHEF----YALGFEHLYALSSVNGSGTGELLDDLVALLPV 165 >gi|315637972|ref|ZP_07893157.1| ribosome-associated GTPase EngA [Campylobacter upsaliensis JV21] gi|315481820|gb|EFU72439.1| ribosome-associated GTPase EngA [Campylobacter upsaliensis JV21] Length = 459 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 + L+G N GKS+L NR +++I + TTR + V+ + + +D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRIARQRIAITSEISGTTRDTNKIKVNINGKEALLIDSGGL-DE 61 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 + K + + S + K+ADI+ +VD + K + LI+NK+D Sbjct: 62 SNELFKNVKQNSLNAAKNADIILYLVDGKNLPDEEDRKFFYALKKLQKPMALIINKVDNK 121 Query: 144 K-PERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 K ER+ E +++ F +S T G D++ +L Sbjct: 122 KDEERVYEFVNFG-----VKELFNLSVTHNVGLDELYAWL 156 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 8/127 (6%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + +VG N GKS+L+N V + S+V+ TT V V K+ + F+DT GI Sbjct: 199 IGIVGRVNVGKSSLLNALVKEQRSVVSSIAGTTIDPVNESVMYKDKLLEFIDTAGIRKRG 258 Query: 85 --DSYHKLMIRLSWSTIKHADIVCLVVDSH---RELKVNIHDLLKEIAKRSSRLILILNK 139 + + + ++++ I LV+D++ EL I L I+K +I++LNK Sbjct: 259 KIQGLERFALNRTEKMLENSQIALLVLDANEGFNELDERIAGL---ISKHYLGVIIVLNK 315 Query: 140 IDCVKPE 146 D + E Sbjct: 316 WDKTRYE 322 >gi|315225621|ref|ZP_07867430.1| ribosome-associated GTPase EngA [Capnocytophaga ochracea F0287] gi|314944438|gb|EFS96478.1| ribosome-associated GTPase EngA [Capnocytophaga ochracea F0287] Length = 434 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 26 ALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI---FN 82 A+VG NAGKS+ +N +G IVT TTR + + + +DT GI Sbjct: 178 AVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRKAK 237 Query: 83 AKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILIL-NKID 141 K+ + S I+H+D+ L++D+ R + ++ +A+R+ + I+IL NK D Sbjct: 238 VKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFESQDANIF-WLAQRNRKGIVILVNKWD 296 Query: 142 CVKPE 146 V+ E Sbjct: 297 LVEKE 301 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 7/169 (4%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPG-I 80 S VA+VG N GKST NR + + +IV TR G +DT G + Sbjct: 2 SAIVAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYL 61 Query: 81 FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI-LNK 139 DS+ K + + I AD + +V+ L + + + E+ ++ + IL+ +NK Sbjct: 62 AGGDDSFEKEINKQVALAIDEADAIIFMVNVEEGL-TGMDESVAELLRKCRKPILVAVNK 120 Query: 140 IDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPL 188 +D + + + E + +S+ G G ++L+ L + LP+ Sbjct: 121 VDSNNRRNDMHEF----YALGFEHLYALSSVNGSGTGELLDDLVALLPV 165 >gi|289550746|ref|YP_003471650.1| GTP-binding protein EngA [Staphylococcus lugdunensis HKU09-01] gi|289180278|gb|ADC87523.1| GTP-binding protein EngA [Staphylococcus lugdunensis HKU09-01] Length = 436 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 8/159 (5%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 VA+VG N GKST+ NR VG +VSIV TR + + +DT GI Sbjct: 5 VVAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGI-EI 63 Query: 84 KDSYHKLMIRLSWS-TIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR-LILILNKID 141 D+ + IR I AD++ +V+ RE +++ +I +S + ++L +NK+D Sbjct: 64 GDAPFQTQIRAQAEIAIDEADVIIFMVNV-REGLTQSDEMVAQILYKSKKTVVLAVNKVD 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 PE + + L F E + +S + G G D+L+ Sbjct: 123 --NPEMKTDIYDFY-ALGFGEP-YPISGSHGLGLGDLLD 157 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 ++++G N GKS+LVN +G + IV++ TTR + + V +DT G+ Sbjct: 178 LSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYTYDNQDYVLIDTAGMRKKG 237 Query: 85 DSY---HKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 Y K + + I+ +++V +V+D+ + + + +++++NK D Sbjct: 238 KVYESTEKYSVLRALKAIERSNVVLIVIDAEEGIIEQDKRVAGYAHEEGKAVVIVVNKWD 297 Query: 142 CVK 144 V+ Sbjct: 298 TVE 300 >gi|117926861|ref|YP_867478.1| small GTP-binding protein [Magnetococcus sp. MC-1] gi|117610617|gb|ABK46072.1| small GTP-binding protein [Magnetococcus sp. MC-1] Length = 495 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 6/167 (3%) Query: 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLD 76 Q S+ VALVG N GKSTL NR + ++V TR GI+ ++ +D Sbjct: 11 QTMSKLPLVALVGRPNVGKSTLFNRLTRTRDALVDDTPGLTRDRQYGIMKRGDTPFPMVD 70 Query: 77 TPGI-FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLIL 135 T G + ++ L+ + I+ ADI+ VVD + + + + +I+ Sbjct: 71 TGGFEADPGETMVSLIRGQTILAIEEADIIVFVVDGSTGPLTDDYAIASHLRSSGKPVII 130 Query: 136 ILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 NK E+ A I + +E +S+ G G D+L L Sbjct: 131 AANKS-----EKKAATASIEFHELGMEPIIPISSAHGLGIGDLLETL 172 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 12/129 (9%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNA 83 +A+VG NAGKS+LVNR VG + + + TTR SI I ++ +DT GI Sbjct: 214 LAVVGCPNAGKSSLVNRLVGEERLLASEIAGTTRDSIDVPITDANGETVILVDTAGIRRK 273 Query: 84 KD---SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRS----SRLILI 136 K + + +++ A++ LV+D+ R + D K I + LI Sbjct: 274 SRVSLRVEKFAVIAALKSMERAEVAILVLDAQR----GVTDQDKRIGSYALDAGCGLIFA 329 Query: 137 LNKIDCVKP 145 +NK D + P Sbjct: 330 VNKWDTMPP 338 >gi|325127951|gb|EGC50852.1| GTP-binding protein [Neisseria meningitidis N1568] gi|325134015|gb|EGC56670.1| GTP-binding protein [Neisseria meningitidis M13399] gi|325202361|gb|ADY97815.1| GTP-binding protein [Neisseria meningitidis M01-240149] gi|325206317|gb|ADZ01770.1| GTP-binding protein [Neisseria meningitidis M04-240196] gi|325207887|gb|ADZ03339.1| GTP-binding protein [Neisseria meningitidis NZ-05/33] Length = 485 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G + I TTR + I E+E + +DT Sbjct: 172 DAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 230 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 231 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 290 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + +NK D + ER + + +I KL F++ K +SA K G D + + + + Sbjct: 291 VAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGIDGLFDSIQAA 344 Score = 38.9 bits (89), Expect = 0.90, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 8/175 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS H+ M + + + AD V +VD L + + + + L +NK + Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 R + AE + + +++S G G ++ + P P V AD Sbjct: 123 GGN--RAVLAAEFYE--LALGDPYVISGAHGDGVYYLIEEILENFP-EPEVEEAD 172 >gi|254804723|ref|YP_003082944.1| putative GTP-binding protein [Neisseria meningitidis alpha14] gi|254668265|emb|CBA05137.1| putative GTP-binding protein [Neisseria meningitidis alpha14] gi|254673335|emb|CBA08527.1| putative GTP-binding protein [Neisseria meningitidis alpha275] gi|325132265|gb|EGC54958.1| GTP-binding protein [Neisseria meningitidis M6190] gi|325137764|gb|EGC60339.1| GTP-binding protein [Neisseria meningitidis ES14902] Length = 485 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQ-IVFLDT 77 +++ A++G N GKSTLVN +G + I TTR + I E+E + +DT Sbjct: 172 DAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIH-IDFEREGKPFTIIDT 230 Query: 78 PGI---FNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLI 134 G+ ++ K + + ++ A++ LV+D+ +++ + + L+ Sbjct: 231 AGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDATIAGFALEAGRALV 290 Query: 135 LILNKIDCVKPERLLE-QAEIANKLVFIE--KTFMVSATKGHGCDDVLNYLCST 185 + +NK D + ER + + +I KL F++ K +SA K G D + + + + Sbjct: 291 VAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGIDGLFDSIQAA 344 Score = 38.9 bits (89), Expect = 0.88, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 8/175 (4%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83 +ALVG N GKSTL NR K ++V TR G + +DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 63 Query: 84 KDS--YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKID 141 DS H+ M + + + AD V +VD L + + + + L +NK + Sbjct: 64 VDSGILHE-MAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGE 122 Query: 142 CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSAD 196 R + AE + + +++S G G ++ + P P V AD Sbjct: 123 GGN--RAVLAAEFYE--LALGDPYVISGAHGDGVYYLIEEILENFP-EPEVEEAD 172 >gi|156083246|ref|XP_001609107.1| GTP-binding protein engA [Babesia bovis T2Bo] gi|154796357|gb|EDO05539.1| GTP-binding protein engA, putative [Babesia bovis] Length = 353 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 1/123 (0%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI-FNA 83 V+ VG N GKS+LVN G +V+ TT V VSEK Q + +DT G+ Sbjct: 161 VSFVGRPNCGKSSLVNLLSGTNRCLVSSNEGTTLDNVEVTVSEKGRQYLLIDTAGMRIQT 220 Query: 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCV 143 ++ L + I+ +D+ LV+D++ + N L + I + +++ NK D + Sbjct: 221 QNRRSFLPKGRGLNAIRRSDVCVLVIDANWGISRNDLKLAEVIRMENRAAVIVCNKWDLI 280 Query: 144 KPE 146 + Sbjct: 281 DKD 283 >gi|154151388|re