BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780941|ref|YP_003065354.1| GTP-binding protein Era
[Candidatus Liberibacter asiaticus str. psy62]
         (311 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 311

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/311 (100%), Positives = 311/311 (100%)

Query: 1   MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60
           MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI
Sbjct: 1   MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60

Query: 61  VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120
           VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH
Sbjct: 61  VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120

Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180
           DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN
Sbjct: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180

Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240
           YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG
Sbjct: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240

Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300
           SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH
Sbjct: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300

Query: 301 DPKCCPQREIF 311
           DPKCCPQREIF
Sbjct: 301 DPKCCPQREIF 311


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 470

 Score = 51.6 bits (122), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 13/131 (9%)

Query: 24  CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR------SIVRGIVSEKESQIVFLDT 77
            +A+VGA N GKSTL NR V  K+++V +    TR      +I+ G++         +DT
Sbjct: 4   TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN------IVDT 57

Query: 78  PGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136
            GI + K+ S  K M   +   I  A ++  ++DS   +    H +   + K++  +I++
Sbjct: 58  AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117

Query: 137 LNKIDCVKPER 147
            NK+D    +R
Sbjct: 118 SNKMDTRIAQR 128



 Score = 43.1 bits (100), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 11  EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70
           E K  V++ S+   +A+VG  N GKSTL+NR +G    +   +   TR  V    + K  
Sbjct: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251

Query: 71  QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127
            I   DT G+       +S  +  ++ S  +++  +   +++D+    +     ++  + 
Sbjct: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311

Query: 128 KRSSRLILILNKIDCVKPERLLEQ---AEIANKLVFIEKTFM--VSATKGHGCDDVL 179
                ++L LNK D V  +  L Q    +    L  I   ++  +S   G G DD++
Sbjct: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368


>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 440

 Score = 43.1 bits (100), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 25  VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84
           + ++G +NAGKS+L N      V+IVT    TTR ++   +  +   +   DT GI    
Sbjct: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281

Query: 85  DSYHKLMIRLSWSTIKHADIVCLV--VDSHREL 115
           D   K  I+ ++  +++AD++ L+  ++S +E+
Sbjct: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314


>gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62]
          Length = 335

 Score = 40.0 bits (92), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 9/164 (5%)

Query: 25  VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84
           + ++G  NAGKST +     AK  I  +   TT     GIV E   + +  D PGI    
Sbjct: 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPF-TTLYPNLGIVKEGYKEFILADIPGIIKNA 220

Query: 85  DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-----ILILNK 139
                +  R    T +   ++ +V      ++     +L E++  +S L     I+ L++
Sbjct: 221 HQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQ 280

Query: 140 IDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182
           ID V  + L  ++ E+A +   +   F  S+  GHG   +L  L
Sbjct: 281 IDTVDSDTLARKKNELATQCGQV--PFEFSSITGHGIPQILECL 322


>gi|254780484|ref|YP_003064897.1| GTPase EngB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 212

 Score = 34.7 bits (78), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 18/150 (12%)

Query: 25  VALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQI---VFLDT 77
           +A  G +N GKS+L+N  V     A+ S    + Q     V    S  ++ +     +D 
Sbjct: 32  IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDM 91

Query: 78  PGIFNAK------DSYHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129
           PG   A+      DS+  L++R     ST++    V L++D    +K    D+   + K+
Sbjct: 92  PGYGYARAPKKNVDSWGGLIVRYLSERSTLR---CVYLLIDCRHGVKQIDQDVFSFLDKK 148

Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLV 159
           +    ++L KID + P    E  E    L+
Sbjct: 149 AVSYQIVLTKIDKLSPTTAQETLEKTKYLI 178


>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 606

 Score = 32.7 bits (73), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 32/190 (16%)

Query: 20  SRSGCVALVGATNAGKSTLVNRFVG--------------------AKVSIVTHKVQTTRS 59
           SR    ++V   + GKSTL +RF+                      +   +T K QT R 
Sbjct: 9   SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVR- 67

Query: 60  IVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119
           +       K+ Q+  +DTPG  +   +Y    +  S S  + +    LVVD+ + ++   
Sbjct: 68  LNYTSTDAKDYQLNLIDTPG--HVDFTYE---VSRSLSACEGS---LLVVDATQGVEAQT 119

Query: 120 HDLLKEIAKRSSRLILILNKID--CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177
              + +    +  +I +LNK D     P+R+ +Q E     +  E   +VSA  G G   
Sbjct: 120 LANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIE-ETIGISTEDALLVSAKTGEGIPL 178

Query: 178 VLNYLCSTLP 187
           +L  +   LP
Sbjct: 179 LLERIVQQLP 188


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 27.7 bits (60), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 13  KDFVQDNSRSGCVALVGATNAGKSTLVNRFVG 44
           KDF        C+ +VG   AGK+TL+    G
Sbjct: 301 KDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 26.6 bits (57), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 25/129 (19%)

Query: 21  RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI--------VSEKESQI 72
           R   V ++G  + GK++L++            K    +  + GI        V+ +   I
Sbjct: 382 RPPVVTIMGHVDHGKTSLLD---------AIRKADVAKGEIGGITQHIGAYQVAYQGKNI 432

Query: 73  VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132
            FLDTPG        H     +     +  DI  LV+ +  E+     + +         
Sbjct: 433 TFLDTPG--------HAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS 484

Query: 133 LILILNKID 141
           +I+ +NKID
Sbjct: 485 IIVAINKID 493


>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 438

 Score = 25.0 bits (53), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 20/62 (32%)

Query: 14 DFVQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72
          D V  N  SG  V L+G + +GKSTL+                    I+ G+VS    Q+
Sbjct: 34 DKVNFNVSSGEIVGLLGRSGSGKSTLLR-------------------IIAGLVSPSSGQV 74

Query: 73 VF 74
          +F
Sbjct: 75 LF 76


>gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 254

 Score = 25.0 bits (53), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 253 PSQKKIMLGKNGQNIKTISLEAK----KEIAEILEQ 284
           PS K I + KN  N+K I+++ +    +EIAE  E+
Sbjct: 96  PSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEK 131


>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 249

 Score = 25.0 bits (53), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHK--VQTTRSIVRGIVSEKESQIVFL---- 75
          S  VA++G   +GKSTL     G K   +T    +    SI+   + E+ S+ +FL    
Sbjct: 29 SEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQY 88

Query: 76 --DTPGIF 81
            + PGI 
Sbjct: 89 PVEIPGII 96


>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 234

 Score = 24.6 bits (52), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 25 VALVGATNAGKSTLVNRFVGAKV----SIVTHKVQTTRS 59
          + ++G + AGKSTL++   G K     SI  +    TRS
Sbjct: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRS 66


>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 280

 Score = 24.6 bits (52), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVG 44
          F+ +N+     AL+G   AGKSTL    +G
Sbjct: 34 FIPENT---ITALIGLNGAGKSTLFQAIMG 60


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 24.6 bits (52), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 9/15 (60%), Positives = 13/15 (86%)

Query: 26  ALVGATNAGKSTLVN 40
           ALVG + +GKST++N
Sbjct: 383 ALVGPSGSGKSTIIN 397


>gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 436

 Score = 24.6 bits (52), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 224 PYSSCVVTEKWEEK---KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAE 280
           P S  +   K +E+   +DG I+IR ++Y+      +I+ GK     + ++   +  + E
Sbjct: 372 PQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGK-----EAVTFLVR--LKE 424

Query: 281 ILEQPVHLIL 290
           +LE P   IL
Sbjct: 425 LLEDPERFIL 434


>gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster
           biogenesis [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 406

 Score = 23.9 bits (50), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 7/62 (11%)

Query: 216 FLHLHKEIPYSSCVVTEKWEEKKD------GSILIRQVIYVERPSQKKIMLGKNGQNIKT 269
           + ++H+ + Y +  VT+K+E+ +D       +  ++++I+  R + + I L   G   + 
Sbjct: 51  YANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFT-RSATESINLVSYGWGARH 109

Query: 270 IS 271
           IS
Sbjct: 110 IS 111


>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
          Length = 806

 Score = 23.5 bits (49), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 11  EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFV 43
           E K  + D +R   + + G T +GKS  +N  +
Sbjct: 443 EGKPIIADLARMPHLLIAGTTGSGKSVAINTMI 475


>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 483

 Score = 23.5 bits (49), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 25  VALVGATNAGKSTLVN---RFVGAKVSIVT 51
           V + G T +GK+TL+N   R++     IVT
Sbjct: 253 VLISGGTGSGKTTLLNCLTRYIDKDERIVT 282


>gi|254780783|ref|YP_003065196.1| transcription regulator protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 149

 Score = 23.1 bits (48), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 103 DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIE 162
           DIV   V +H     +I  L+ ++     R++      D V+PERL     I      IE
Sbjct: 19  DIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQPERLKPAVPIRKS---IE 75

Query: 163 KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA--DQISDLPMFHFTAEITREKL 215
              +     G     +  +L +   + P  Y    +  SD PM       TR KL
Sbjct: 76  NGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKL 130


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 23.1 bits (48), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 20 SRSGCVALVGATNAG-KSTLVNRFVGAKVSIVTHKVQTTRSI 60
          +RS  V ++G  +AG ++  V   +GA  +++THK  T  S+
Sbjct: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.136    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,377
Number of Sequences: 1233
Number of extensions: 7824
Number of successful extensions: 53
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 24
length of query: 311
length of database: 328,796
effective HSP length: 74
effective length of query: 237
effective length of database: 237,554
effective search space: 56300298
effective search space used: 56300298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)