BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] (311 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/311 (100%), Positives = 311/311 (100%) Query: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI Sbjct: 1 MEMGEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSI 60 Query: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH Sbjct: 61 VRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIH 120 Query: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN Sbjct: 121 DLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLN 180 Query: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG Sbjct: 181 YLCSTLPLAPWVYSADQISDLPMFHFTAEITREKLFLHLHKEIPYSSCVVTEKWEEKKDG 240 Query: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH Sbjct: 241 SILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAEILEQPVHLILFVKVQKDWGH 300 Query: 301 DPKCCPQREIF 311 DPKCCPQREIF Sbjct: 301 DPKCCPQREIF 311 >gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 13/131 (9%) Query: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR------SIVRGIVSEKESQIVFLDT 77 +A+VGA N GKSTL NR V K+++V + TR +I+ G++ +DT Sbjct: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN------IVDT 57 Query: 78 PGIFNAKD-SYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILI 136 GI + K+ S K M + I A ++ ++DS + H + + K++ +I++ Sbjct: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 Query: 137 LNKIDCVKPER 147 NK+D +R Sbjct: 118 SNKMDTRIAQR 128 Score = 43.1 bits (100), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 8/177 (4%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKES 70 E K V++ S+ +A+VG N GKSTL+NR +G + + TR V + K Sbjct: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 Query: 71 QIVFLDTPGIFNAK---DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIA 127 I DT G+ +S + ++ S +++ + +++D+ + ++ + Sbjct: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 Query: 128 KRSSRLILILNKIDCVKPERLLEQ---AEIANKLVFIEKTFM--VSATKGHGCDDVL 179 ++L LNK D V + L Q + L I ++ +S G G DD++ Sbjct: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 >gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 43.1 bits (100), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + ++G +NAGKS+L N V+IVT TTR ++ + + + DT GI Sbjct: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 Query: 85 DSYHKLMIRLSWSTIKHADIVCLV--VDSHREL 115 D K I+ ++ +++AD++ L+ ++S +E+ Sbjct: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 >gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62] Length = 335 Score = 40.0 bits (92), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 9/164 (5%) Query: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 + ++G NAGKST + AK I + TT GIV E + + D PGI Sbjct: 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPF-TTLYPNLGIVKEGYKEFILADIPGIIKNA 220 Query: 85 DSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRL-----ILILNK 139 + R T + ++ +V ++ +L E++ +S L I+ L++ Sbjct: 221 HQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQ 280 Query: 140 IDCVKPERLL-EQAEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 ID V + L ++ E+A + + F S+ GHG +L L Sbjct: 281 IDTVDSDTLARKKNELATQCGQV--PFEFSSITGHGIPQILECL 322 >gi|254780484|ref|YP_003064897.1| GTPase EngB [Candidatus Liberibacter asiaticus str. psy62] Length = 212 Score = 34.7 bits (78), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 18/150 (12%) Query: 25 VALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQI---VFLDT 77 +A G +N GKS+L+N V A+ S + Q V S ++ + +D Sbjct: 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDM 91 Query: 78 PGIFNAK------DSYHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129 PG A+ DS+ L++R ST++ V L++D +K D+ + K+ Sbjct: 92 PGYGYARAPKKNVDSWGGLIVRYLSERSTLR---CVYLLIDCRHGVKQIDQDVFSFLDKK 148 Query: 130 SSRLILILNKIDCVKPERLLEQAEIANKLV 159 + ++L KID + P E E L+ Sbjct: 149 AVSYQIVLTKIDKLSPTTAQETLEKTKYLI 178 >gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str. psy62] Length = 606 Score = 32.7 bits (73), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 32/190 (16%) Query: 20 SRSGCVALVGATNAGKSTLVNRFVG--------------------AKVSIVTHKVQTTRS 59 SR ++V + GKSTL +RF+ + +T K QT R Sbjct: 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVR- 67 Query: 60 IVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNI 119 + K+ Q+ +DTPG + +Y + S S + + LVVD+ + ++ Sbjct: 68 LNYTSTDAKDYQLNLIDTPG--HVDFTYE---VSRSLSACEGS---LLVVDATQGVEAQT 119 Query: 120 HDLLKEIAKRSSRLILILNKID--CVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 + + + +I +LNK D P+R+ +Q E + E +VSA G G Sbjct: 120 LANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIE-ETIGISTEDALLVSAKTGEGIPL 178 Query: 178 VLNYLCSTLP 187 +L + LP Sbjct: 179 LLERIVQQLP 188 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 27.7 bits (60), Expect = 0.23, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 13 KDFVQDNSRSGCVALVGATNAGKSTLVNRFVG 44 KDF C+ +VG AGK+TL+ G Sbjct: 301 KDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332 >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 26.6 bits (57), Expect = 0.54, Method: Compositional matrix adjust. Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 25/129 (19%) Query: 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGI--------VSEKESQI 72 R V ++G + GK++L++ K + + GI V+ + I Sbjct: 382 RPPVVTIMGHVDHGKTSLLD---------AIRKADVAKGEIGGITQHIGAYQVAYQGKNI 432 Query: 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSR 132 FLDTPG H + + DI LV+ + E+ + + Sbjct: 433 TFLDTPG--------HAAFYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVS 484 Query: 133 LILILNKID 141 +I+ +NKID Sbjct: 485 IIVAINKID 493 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 25.0 bits (53), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 20/62 (32%) Query: 14 DFVQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 D V N SG V L+G + +GKSTL+ I+ G+VS Q+ Sbjct: 34 DKVNFNVSSGEIVGLLGRSGSGKSTLLR-------------------IIAGLVSPSSGQV 74 Query: 73 VF 74 +F Sbjct: 75 LF 76 >gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 25.0 bits (53), Expect = 1.5, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%) Query: 253 PSQKKIMLGKNGQNIKTISLEAK----KEIAEILEQ 284 PS K I + KN N+K I+++ + +EIAE E+ Sbjct: 96 PSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEK 131 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%) Query: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHK--VQTTRSIVRGIVSEKESQIVFL---- 75 S VA++G +GKSTL G K +T + SI+ + E+ S+ +FL Sbjct: 29 SEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQY 88 Query: 76 --DTPGIF 81 + PGI Sbjct: 89 PVEIPGII 96 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 24.6 bits (52), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 25 VALVGATNAGKSTLVNRFVGAKV----SIVTHKVQTTRS 59 + ++G + AGKSTL++ G K SI + TRS Sbjct: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRS 66 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%) Query: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVG 44 F+ +N+ AL+G AGKSTL +G Sbjct: 34 FIPENT---ITALIGLNGAGKSTLFQAIMG 60 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust. Identities = 9/15 (60%), Positives = 13/15 (86%) Query: 26 ALVGATNAGKSTLVN 40 ALVG + +GKST++N Sbjct: 383 ALVGPSGSGKSTIIN 397 >gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 436 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%) Query: 224 PYSSCVVTEKWEEK---KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAE 280 P S + K +E+ +DG I+IR ++Y+ +I+ GK + ++ + + E Sbjct: 372 PQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGK-----EAVTFLVR--LKE 424 Query: 281 ILEQPVHLIL 290 +LE P IL Sbjct: 425 LLEDPERFIL 434 >gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter asiaticus str. psy62] Length = 406 Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust. Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 7/62 (11%) Query: 216 FLHLHKEIPYSSCVVTEKWEEKKD------GSILIRQVIYVERPSQKKIMLGKNGQNIKT 269 + ++H+ + Y + VT+K+E+ +D + ++++I+ R + + I L G + Sbjct: 51 YANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFT-RSATESINLVSYGWGARH 109 Query: 270 IS 271 IS Sbjct: 110 IS 111 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 23.5 bits (49), Expect = 4.7, Method: Compositional matrix adjust. Identities = 10/33 (30%), Positives = 17/33 (51%) Query: 11 EHKDFVQDNSRSGCVALVGATNAGKSTLVNRFV 43 E K + D +R + + G T +GKS +N + Sbjct: 443 EGKPIIADLARMPHLLIAGTTGSGKSVAINTMI 475 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 23.5 bits (49), Expect = 5.2, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Query: 25 VALVGATNAGKSTLVN---RFVGAKVSIVT 51 V + G T +GK+TL+N R++ IVT Sbjct: 253 VLISGGTGSGKTTLLNCLTRYIDKDERIVT 282 >gi|254780783|ref|YP_003065196.1| transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 149 Score = 23.1 bits (48), Expect = 5.9, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 5/115 (4%) Query: 103 DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIE 162 DIV V +H +I L+ ++ R++ D V+PERL I IE Sbjct: 19 DIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQPERLKPAVPIRKS---IE 75 Query: 163 KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA--DQISDLPMFHFTAEITREKL 215 + G + +L + + P Y + SD PM TR KL Sbjct: 76 NGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKL 130 >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 23.1 bits (48), Expect = 6.8, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 20 SRSGCVALVGATNAG-KSTLVNRFVGAKVSIVTHKVQTTRSI 60 +RS V ++G +AG ++ V +GA +++THK T S+ Sbjct: 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.136 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 194,377 Number of Sequences: 1233 Number of extensions: 7824 Number of successful extensions: 53 Number of sequences better than 100.0: 22 Number of HSP's better than 100.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 24 length of query: 311 length of database: 328,796 effective HSP length: 74 effective length of query: 237 effective length of database: 237,554 effective search space: 56300298 effective search space used: 56300298 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)