HHsearch alignment for GI: 254780942 and conserved domain: COG1083
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane].
Probab=99.24 E-value=2.3e-11 Score=83.13 Aligned_cols=213 Identities=20% Similarity=0.273 Sum_probs=136.9
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCC-CEEEEEECCCHHHHHHHHCCCCCEEEEEECCCC-
Q ss_conf 740899945887723278887441258848579999999997799-779999579889999973026972899985998-
Q gi|254780942|r 3 RKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGI-ENVALVLGYGAEEITRINFPPTLSVEYYIQDCQ- 80 (442)
Q Consensus 3 ~~~~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~g~-~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~- 80 (442)
T Consensus 2 ~~~iAiIpAR~gSKgI-~~--KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~ygak~~~~Rp~~LA 76 (228)
T COG1083 2 MKNIAIIPARGGSKGI-KN--KNIRKFGGKPLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKKYGAKVFLKRPKELA 76 (228)
T ss_pred CCEEEEEECCCCCCCC-CC--CCHHHHCCCCHHHHHHHHHHCCCCCCEEEECC--CCHHHHHHHHHHCCCCCCCCCHHHC
T ss_conf 6148997626788768-76--33577579615899999986588522699847--9589999998727611024874541
Q ss_pred CC---HHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCEEEECCCCCEECC
Q ss_conf 86---1446641000012344605898515411153322000000135-8610010010122157440420233310010
Q gi|254780942|r 81 QG---TAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQ-GYSIAVVGFNADNPKGYGRLLIKNNEIIAIR 156 (442)
Q Consensus 81 ~G---Ta~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~-~~~~~i~~~~~~dp~~yGvV~~d~~~v~~i~ 156 (442)
T Consensus 77 ~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~-p~k~f~~~~~~~~~~~ 155 (228)
T COG1083 77 SDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHH-PYKAFSLNNGEVKPVN 155 (228)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC-HHHHHHHCCCCEEECC
T ss_conf 672167899999998744245706884068500014579999999965887635887532234-6888875078441011
Q ss_pred CCCCCCC-CC--CCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCC
Q ss_conf 0146675-42--10003556001112501467775328887400111211489999730771799917214301112100
Q gi|254780942|r 157 EENDATD-EE--RKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYE 233 (442)
Q Consensus 157 Ek~d~~~-~~--~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~ 233 (442)
T Consensus 156 ~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~------~~~---------f----~--~~~~~y~m~~~~~~DID~~~D 214 (228)
T COG1083 156 EDPDFETRRQDLPKAYRENGAIYINKKDALLEN------DCF---------F----I--PNTILYEMPEDESIDIDTELD 214 (228)
T ss_pred CCCCCCCCCCCCHHHHHHCCCEEEEHHHHHHHC------CCE---------E----C--CCCEEEECCCCCCCCCCCHHH
T ss_conf 477655421105165653676797527987415------754---------1----5--896689817120005660876
Q ss_pred CCCCCCCCC
Q ss_conf 000012222
Q gi|254780942|r 234 LSLIENIWQ 242 (442)
Q Consensus 234 L~~~~~~~~ 242 (442)
T Consensus 215 l~iae~l~~ 223 (228)
T COG1083 215 LEIAENLIF 223 (228)
T ss_pred HHHHHHHHH
T ss_conf 999999865