HHsearch alignment for GI: 254780942 and conserved domain: COG1208

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=421.38  Aligned_cols=349  Identities=28%  Similarity=0.409  Sum_probs=277.6

Q ss_pred             CCEEEEECCCCCCCCCCC---CCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCC---CCEEEEEEC
Q ss_conf             408999458877232788---87441258848579999999997799779999579889999973026---972899985
Q gi|254780942|r    4 KRLAIVLAAGRGHRMKSS---SSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPP---TLSVEYYIQ   77 (442)
Q Consensus         4 ~~~AiILAaG~GtRl~p~---~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~~---~~~i~~v~q   77 (442)
T Consensus         1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e   80 (358)
T COG1208           1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVE   80 (358)
T ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             93599994665666355448997446579986459999999998799789998774689999998626356986599716


Q ss_pred             CCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCEEEECCCCCCCCEEEEC-CC-CCEE
Q ss_conf             9988614466410000123446058985154111533220000001358-6100100101221574404202-33-3100
Q gi|254780942|r   78 DCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQG-YSIAVVGFNADNPKGYGRLLIK-NN-EIIA  154 (442)
Q Consensus        78 ~~~~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~~-~~~~i~~~~~~dp~~yGvV~~d-~~-~v~~  154 (442)
T Consensus        81 ~~~lGTag~l~~a~~~l~~--~~f~v~~GDv--~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~  156 (358)
T COG1208          81 KEPLGTAGALKNALDLLGG--DDFLVLNGDV--LTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVE  156 (358)
T ss_pred             CCCCCCHHHHHHHHHHHCC--CCEEEEECCC--CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCEEEE
T ss_conf             8766648999999886079--9789997886--22468899999987356642799875277655863997599848988


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCC
Q ss_conf             10014667542100035560011125014677753288874001112114899997307717999172143011121000
Q gi|254780942|r  155 IREENDATDEERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYEL  234 (442)
Q Consensus       155 i~Ek~d~~~~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L  234 (442)
T Consensus       157 f~ekp~~--~~~~~~~in~Giyi~~~~v~-~~i~~~~~~~~~-----~~~~~~l~~~~~~v~~~~~~g-~W~dig~p~d~  227 (358)
T COG1208         157 FREKPGP--EEPPSNLINAGIYIFDPEVF-DYIEKGERFDFE-----EELLPALAAKGEDVYGYVFEG-YWLDIGTPEDL  227 (358)
T ss_pred             EEECCCC--CCCCCCEEEEEEEEECHHHH-CCCCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECC-EEEECCCHHHH
T ss_conf             9972667--67888669999999897894-301335743214-----778999987699569997578-79969998999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00012222211221222332102115279941123317841001223223442000211163134332121112100213
Q gi|254780942|r  235 SLIENIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPF  314 (442)
Q Consensus       235 ~~~~~~~~~~~~~~~l~~gv~~~~p~~~~i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~  314 (442)
T Consensus       228 ~~a~~~~~~~~~~~----------~~~~~-------~~~~~~-----------~~~-~~i~-----gp~~ig~~~~i~~~  273 (358)
T COG1208         228 LEANELLLRGDGKS----------PLGPI-------EEPVVI-----------IRS-AYII-----GPVVIGPGAKIGPG  273 (358)
T ss_pred             HHHHHHHHHHCCCC----------CCCCC-------CCCCCC-----------CCC-EEEE-----CCEEECCCCEECCC
T ss_conf             99999998512235----------65443-------334556-----------662-3885-----89498269789888


Q ss_pred             CCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEE
Q ss_conf             44320000025864432023102112478544874555663988998997980883445775456298788798869989
Q gi|254780942|r  315 ARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSL  394 (442)
Q Consensus       315 ~~i~~~s~i~~~~~Ig~~~ei~~s~i~~g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i  394 (442)
T Consensus       274 ~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~-----~-------~-~i~d-~~~g~~~~i  339 (358)
T COG1208         274 ALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA-----S-------L-IIGD-VVIGINSEI  339 (358)
T ss_pred             CEECCCCEECCCCEECCCCEEEEEEEECCCEECCCCEECCEEECCCCEECC-----C-------C-EEEE-EEECCCEEE
T ss_conf             486898789999888998778754887787988888882069818859998-----6-------1-5701-586366086


Q ss_pred             ECCEEECCCCEECCCCEEC
Q ss_conf             3783988998997783576
Q gi|254780942|r  395 IAPITIGQGTYVASGSIIT  413 (442)
Q Consensus       395 ~~gv~ig~~~~i~ag~~v~  413 (442)
T Consensus       340 ~~g~~~~~~~~~~~~~~~~  358 (358)
T COG1208         340 LPGVVVGPGSVVESGEIED  358 (358)
T ss_pred             CCCEEECCCCCCCCCCCCC
T ss_conf             2761847860615763039