HHsearch alignment for GI: 254780942 and conserved domain: COG1208
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=421.38 Aligned_cols=349 Identities=28% Similarity=0.409 Sum_probs=277.6
Q ss_pred CCEEEEECCCCCCCCCCC---CCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCC---CCEEEEEEC
Q ss_conf 408999458877232788---87441258848579999999997799779999579889999973026---972899985
Q gi|254780942|r 4 KRLAIVLAAGRGHRMKSS---SSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPP---TLSVEYYIQ 77 (442)
Q Consensus 4 ~~~AiILAaG~GtRl~p~---~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~~---~~~i~~v~q 77 (442)
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e 80 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVE 80 (358)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 93599994665666355448997446579986459999999998799789998774689999998626356986599716
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCEEEECCCCCCCCEEEEC-CC-CCEE
Q ss_conf 9988614466410000123446058985154111533220000001358-6100100101221574404202-33-3100
Q gi|254780942|r 78 DCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQG-YSIAVVGFNADNPKGYGRLLIK-NN-EIIA 154 (442)
Q Consensus 78 ~~~~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~~-~~~~i~~~~~~dp~~yGvV~~d-~~-~v~~ 154 (442)
T Consensus 81 ~~~lGTag~l~~a~~~l~~--~~f~v~~GDv--~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~ 156 (358)
T COG1208 81 KEPLGTAGALKNALDLLGG--DDFLVLNGDV--LTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVE 156 (358)
T ss_pred CCCCCCHHHHHHHHHHHCC--CCEEEEECCC--CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCEEEE
T ss_conf 8766648999999886079--9789997886--22468899999987356642799875277655863997599848988
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCC
Q ss_conf 10014667542100035560011125014677753288874001112114899997307717999172143011121000
Q gi|254780942|r 155 IREENDATDEERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYEL 234 (442)
Q Consensus 155 i~Ek~d~~~~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L 234 (442)
T Consensus 157 f~ekp~~--~~~~~~~in~Giyi~~~~v~-~~i~~~~~~~~~-----~~~~~~l~~~~~~v~~~~~~g-~W~dig~p~d~ 227 (358)
T COG1208 157 FREKPGP--EEPPSNLINAGIYIFDPEVF-DYIEKGERFDFE-----EELLPALAAKGEDVYGYVFEG-YWLDIGTPEDL 227 (358)
T ss_pred EEECCCC--CCCCCCEEEEEEEEECHHHH-CCCCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECC-EEEECCCHHHH
T ss_conf 9972667--67888669999999897894-301335743214-----778999987699569997578-79969998999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00012222211221222332102115279941123317841001223223442000211163134332121112100213
Q gi|254780942|r 235 SLIENIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPF 314 (442)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~gv~~~~p~~~~i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 314 (442)
T Consensus 228 ~~a~~~~~~~~~~~----------~~~~~-------~~~~~~-----------~~~-~~i~-----gp~~ig~~~~i~~~ 273 (358)
T COG1208 228 LEANELLLRGDGKS----------PLGPI-------EEPVVI-----------IRS-AYII-----GPVVIGPGAKIGPG 273 (358)
T ss_pred HHHHHHHHHHCCCC----------CCCCC-------CCCCCC-----------CCC-EEEE-----CCEEECCCCEECCC
T ss_conf 99999998512235----------65443-------334556-----------662-3885-----89498269789888
Q ss_pred CCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEE
Q ss_conf 44320000025864432023102112478544874555663988998997980883445775456298788798869989
Q gi|254780942|r 315 ARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSL 394 (442)
Q Consensus 315 ~~i~~~s~i~~~~~Ig~~~ei~~s~i~~g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i 394 (442)
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~-----~-------~-~i~d-~~~g~~~~i 339 (358)
T COG1208 274 ALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA-----S-------L-IIGD-VVIGINSEI 339 (358)
T ss_pred CEECCCCEECCCCEECCCCEEEEEEEECCCEECCCCEECCEEECCCCEECC-----C-------C-EEEE-EEECCCEEE
T ss_conf 486898789999888998778754887787988888882069818859998-----6-------1-5701-586366086
Q ss_pred ECCEEECCCCEECCCCEEC
Q ss_conf 3783988998997783576
Q gi|254780942|r 395 IAPITIGQGTYVASGSIIT 413 (442)
Q Consensus 395 ~~gv~ig~~~~i~ag~~v~ 413 (442)
T Consensus 340 ~~g~~~~~~~~~~~~~~~~ 358 (358)
T COG1208 340 LPGVVVGPGSVVESGEIED 358 (358)
T ss_pred CCCEEECCCCCCCCCCCCC
T ss_conf 2761847860615763039