HHsearch alignment for GI: 254780942 and conserved domain: COG1209

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].
Probab=100.00  E-value=0  Score=319.52  Aligned_cols=228  Identities=25%  Similarity=0.378  Sum_probs=200.9

Q ss_pred             CEEEEECCCCCCCCCCC---CCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECC-CHHHHHHHHCC---CCCEEEEEEC
Q ss_conf             08999458877232788---87441258848579999999997799779999579-88999997302---6972899985
Q gi|254780942|r    5 RLAIVLAAGRGHRMKSS---SSKVLQKIAGKPMISHVMETIAAAGIENVALVLGY-GAEEITRINFP---PTLSVEYYIQ   77 (442)
Q Consensus         5 ~~AiILAaG~GtRl~p~---~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~-~~e~i~~~~~~---~~~~i~~v~q   77 (442)
T Consensus         1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q   80 (286)
T COG1209           1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQ   80 (286)
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf             97279637675443323136775332116862158579999975985699996688505666333671003863699965


Q ss_pred             CCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCEEEEC-CCCCEEC
Q ss_conf             9988614466410000123446058985154111533220000001-3586100100101221574404202-3331001
Q gi|254780942|r   78 DCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKI-AQGYSIAVVGFNADNPKGYGRLLIK-NNEIIAI  155 (442)
Q Consensus        78 ~~~~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~-~~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i  155 (442)
T Consensus        81 ~~p~GlA~Av~~a~~fv~~--~~f~l~LGDN-i~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~l  156 (286)
T COG1209          81 PEPDGLAHAVLIAEDFVGD--DDFVLYLGDN-IFQD-GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGL  156 (286)
T ss_pred             CCCCCHHHHHHHHHHHCCC--CCEEEEECCC-EECC-CHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEE
T ss_conf             8987689999988864589--8659992684-4105-7799999985248994899998489530448998689968776


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCCC
Q ss_conf             00146675421000355600111250146777532888740011121148999973077179991721430111210000
Q gi|254780942|r  156 REENDATDEERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELS  235 (442)
Q Consensus       156 ~Ek~d~~~~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L~  235 (442)
T Consensus       157 ~EKP----~~P~SNlAvtGlY~~d-~~Vf~~~~~ikPS-~RGElEITd~i~~~i~~G~~~~~~~~~G-~WlDtGt~~sll  229 (286)
T COG1209         157 EEKP----KEPKSNLAVTGLYFYD-PSVFEAIKQIKPS-ARGELEITDAIDLYIEKGYLVVAILIRG-WWLDTGTPESLL  229 (286)
T ss_pred             EECC----CCCCCCEEEEEEEEEC-HHHHHHHHCCCCC-CCCCEEEHHHHHHHHHCCCEEEEEECCC-EEEECCCHHHHH
T ss_conf             7889----9998762688999708-5899998718988-7785675288999997696888987151-688638701289


Q ss_pred             CCCCCCCC
Q ss_conf             00122222
Q gi|254780942|r  236 LIENIWQS  243 (442)
Q Consensus       236 ~~~~~~~~  243 (442)
T Consensus       230 eA~~~i~~  237 (286)
T COG1209         230 EANNFVRT  237 (286)
T ss_pred             HHHHHHHH
T ss_conf             99999988