HHsearch alignment for GI: 254780942 and conserved domain: COG1209
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=319.52 Aligned_cols=228 Identities=25% Similarity=0.378 Sum_probs=200.9
Q ss_pred CEEEEECCCCCCCCCCC---CCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECC-CHHHHHHHHCC---CCCEEEEEEC
Q ss_conf 08999458877232788---87441258848579999999997799779999579-88999997302---6972899985
Q gi|254780942|r 5 RLAIVLAAGRGHRMKSS---SSKVLQKIAGKPMISHVMETIAAAGIENVALVLGY-GAEEITRINFP---PTLSVEYYIQ 77 (442)
Q Consensus 5 ~~AiILAaG~GtRl~p~---~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~-~~e~i~~~~~~---~~~~i~~v~q 77 (442)
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q 80 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQ 80 (286)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 97279637675443323136775332116862158579999975985699996688505666333671003863699965
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCEEEEC-CCCCEEC
Q ss_conf 9988614466410000123446058985154111533220000001-3586100100101221574404202-3331001
Q gi|254780942|r 78 DCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKI-AQGYSIAVVGFNADNPKGYGRLLIK-NNEIIAI 155 (442)
Q Consensus 78 ~~~~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~-~~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i 155 (442)
T Consensus 81 ~~p~GlA~Av~~a~~fv~~--~~f~l~LGDN-i~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~l 156 (286)
T COG1209 81 PEPDGLAHAVLIAEDFVGD--DDFVLYLGDN-IFQD-GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGL 156 (286)
T ss_pred CCCCCHHHHHHHHHHHCCC--CCEEEEECCC-EECC-CHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEE
T ss_conf 8987689999988864589--8659992684-4105-7799999985248994899998489530448998689968776
Q ss_pred CCCCCCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCCC
Q ss_conf 00146675421000355600111250146777532888740011121148999973077179991721430111210000
Q gi|254780942|r 156 REENDATDEERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELS 235 (442)
Q Consensus 156 ~Ek~d~~~~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L~ 235 (442)
T Consensus 157 ~EKP----~~P~SNlAvtGlY~~d-~~Vf~~~~~ikPS-~RGElEITd~i~~~i~~G~~~~~~~~~G-~WlDtGt~~sll 229 (286)
T COG1209 157 EEKP----KEPKSNLAVTGLYFYD-PSVFEAIKQIKPS-ARGELEITDAIDLYIEKGYLVVAILIRG-WWLDTGTPESLL 229 (286)
T ss_pred EECC----CCCCCCEEEEEEEEEC-HHHHHHHHCCCCC-CCCCEEEHHHHHHHHHCCCEEEEEECCC-EEEECCCHHHHH
T ss_conf 7889----9998762688999708-5899998718988-7785675288999997696888987151-688638701289
Q ss_pred CCCCCCCC
Q ss_conf 00122222
Q gi|254780942|r 236 LIENIWQS 243 (442)
Q Consensus 236 ~~~~~~~~ 243 (442)
T Consensus 230 eA~~~i~~ 237 (286)
T COG1209 230 EANNFVRT 237 (286)
T ss_pred HHHHHHHH
T ss_conf 99999988