HHsearch alignment for GI: 254780942 and conserved domain: COG1211
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism].
Probab=99.78 E-value=9.2e-18 Score=119.52 Aligned_cols=217 Identities=18% Similarity=0.291 Sum_probs=148.1
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECC-CHHHHHHHH-CCCCCEEEEEEC
Q ss_conf 987408999458877232788874412588485799999999977-99779999579-889999973-026972899985
Q gi|254780942|r 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGY-GAEEITRIN-FPPTLSVEYYIQ 77 (442)
Q Consensus 1 m~~~~~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~-g~~~ivvv~~~-~~e~i~~~~-~~~~~~i~~v~q 77 (442)
T Consensus 1 ~~~~~~~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~ivvv~~~~~~~~~~~~~~~~~~~~v~~v~G 80 (230)
T COG1211 1 MRMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVVKG 80 (230)
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEEECCEEEHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 97407999975763433579998458899998856999999974767676999978466489998632124870799348
Q ss_pred CCCCCHHHHHHHCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEC-CCCCEEC
Q ss_conf 99886144664100001234-460589851541115332200000013586100100101221574404202-3331001
Q gi|254780942|r 78 DCQQGTAHAVLTAQDAIKPG-YDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIK-NNEIIAI 155 (442)
Q Consensus 78 ~~~~GTa~Ai~~a~~~l~~~-~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i 155 (442)
T Consensus 81 G~~R--~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~-~~~~~~aai~alpv~DTi----k~~~~~~~i~~t 153 (230)
T COG1211 81 GATR--QESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIE-LADKYGAAILALPVTDTL----KRVDADGNIVET 153 (230)
T ss_pred CCCH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH-HHCCCCCEEEEEECCCCE----EEECCCCCEEEC
T ss_conf 7517--999999999721158988999646667899999999998-622388179975046737----886589872344
Q ss_pred CCCCCCCCCCCCCCCCCCCHH------EECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCC
Q ss_conf 001466754210003556001------11250146777532888740011121148999973077179991721430111
Q gi|254780942|r 156 REENDATDEERKIHYCNSGLM------AIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCN 229 (442)
Q Consensus 156 ~Ek~d~~~~~~~~~lin~GiY------~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~ 229 (442)
T Consensus 154 ~~---------R~-----~l~~~QTPQ~F~~~~L~~a~~~a~~~~----~~~tDdas~~e~~G~~v~lV~G~~~n-~KiT 214 (230)
T COG1211 154 VD---------RS-----GLWAAQTPQAFRLELLKQALARAFAEG----REITDDASAIEKAGGPVSLVEGSADN-FKIT 214 (230)
T ss_pred CC---------HH-----HHHHHHCCCCCCHHHHHHHHHHHHHCC----CCCCCHHHHHHHCCCCEEEEECCCCE-EEEC
T ss_conf 37---------55-----423433876331999999999998628----77688699998769981998268330-5762
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 21000000122222
Q gi|254780942|r 230 NRYELSLIENIWQS 243 (442)
Q Consensus 230 ~~~~L~~~~~~~~~ 243 (442)
T Consensus 215 tpeDL~~a~~il~~ 228 (230)
T COG1211 215 TPEDLEIAEAILRR 228 (230)
T ss_pred CHHHHHHHHHHHCC
T ss_conf 88899999987526