HHsearch alignment for GI: 254780942 and conserved domain: COG1211

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism].
Probab=99.78  E-value=9.2e-18  Score=119.52  Aligned_cols=217  Identities=18%  Similarity=0.291  Sum_probs=148.1

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECC-CHHHHHHHH-CCCCCEEEEEEC
Q ss_conf             987408999458877232788874412588485799999999977-99779999579-889999973-026972899985
Q gi|254780942|r    1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGY-GAEEITRIN-FPPTLSVEYYIQ   77 (442)
Q Consensus         1 m~~~~~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~-g~~~ivvv~~~-~~e~i~~~~-~~~~~~i~~v~q   77 (442)
T Consensus         1 ~~~~~~~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~ivvv~~~~~~~~~~~~~~~~~~~~v~~v~G   80 (230)
T COG1211           1 MRMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVVKG   80 (230)
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCCEEEEECCEEEHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             97407999975763433579998458899998856999999974767676999978466489998632124870799348


Q ss_pred             CCCCCHHHHHHHCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEC-CCCCEEC
Q ss_conf             99886144664100001234-460589851541115332200000013586100100101221574404202-3331001
Q gi|254780942|r   78 DCQQGTAHAVLTAQDAIKPG-YDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIK-NNEIIAI  155 (442)
Q Consensus        78 ~~~~GTa~Ai~~a~~~l~~~-~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i  155 (442)
T Consensus        81 G~~R--~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~-~~~~~~aai~alpv~DTi----k~~~~~~~i~~t  153 (230)
T COG1211          81 GATR--QESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIE-LADKYGAAILALPVTDTL----KRVDADGNIVET  153 (230)
T ss_pred             CCCH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH-HHCCCCCEEEEEECCCCE----EEECCCCCEEEC
T ss_conf             7517--999999999721158988999646667899999999998-622388179975046737----886589872344


Q ss_pred             CCCCCCCCCCCCCCCCCCCHH------EECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCC
Q ss_conf             001466754210003556001------11250146777532888740011121148999973077179991721430111
Q gi|254780942|r  156 REENDATDEERKIHYCNSGLM------AIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCN  229 (442)
Q Consensus       156 ~Ek~d~~~~~~~~~lin~GiY------~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~  229 (442)
T Consensus       154 ~~---------R~-----~l~~~QTPQ~F~~~~L~~a~~~a~~~~----~~~tDdas~~e~~G~~v~lV~G~~~n-~KiT  214 (230)
T COG1211         154 VD---------RS-----GLWAAQTPQAFRLELLKQALARAFAEG----REITDDASAIEKAGGPVSLVEGSADN-FKIT  214 (230)
T ss_pred             CC---------HH-----HHHHHHCCCCCCHHHHHHHHHHHHHCC----CCCCCHHHHHHHCCCCEEEEECCCCE-EEEC
T ss_conf             37---------55-----423433876331999999999998628----77688699998769981998268330-5762


Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             21000000122222
Q gi|254780942|r  230 NRYELSLIENIWQS  243 (442)
Q Consensus       230 ~~~~L~~~~~~~~~  243 (442)
T Consensus       215 tpeDL~~a~~il~~  228 (230)
T COG1211         215 TPEDLEIAEAILRR  228 (230)
T ss_pred             CHHHHHHHHHHHCC
T ss_conf             88899999987526