HHsearch alignment for GI: 254780942 and conserved domain: COG1861
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane].
Probab=98.74 E-value=2.9e-08 Score=65.47 Aligned_cols=115 Identities=23% Similarity=0.388 Sum_probs=79.4
Q ss_pred CCEEEEECCCCCCCCCCCC--CCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCH--HHHHHHHCCCCCEEEEEECC
Q ss_conf 4089994588772327888--744125884857999999999779-977999957988--99999730269728999859
Q gi|254780942|r 4 KRLAIVLAAGRGHRMKSSS--SKVLQKIAGKPMISHVMETIAAAG-IENVALVLGYGA--EEITRINFPPTLSVEYYIQD 78 (442)
Q Consensus 4 ~~~AiILAaG~GtRl~p~~--pKpLlpi~gkpli~~~i~~l~~~g-~~~ivvv~~~~~--e~i~~~~~~~~~~i~~v~q~ 78 (442)
T Consensus 2 ~~I~~IiQA----RmgStRLpgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vf----- 72 (241)
T COG1861 2 SMILVIIQA----RMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVF----- 72 (241)
T ss_pred CCEEEEEEE----CCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEE-----
T ss_conf 847988530----02676578613333078741999999986043324358973477204579999997082476-----
Q ss_pred CCCCHHHHHH----HCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 9886144664----100001234460589851541115332200000-0135861001
Q gi|254780942|r 79 CQQGTAHAVL----TAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMD-KIAQGYSIAV 131 (442)
Q Consensus 79 ~~~GTa~Ai~----~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~-~~~~~~~~~i 131 (442)
T Consensus 73 --rGs~~dVL~Rf~~a~~a~~--~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s 126 (241)
T COG1861 73 --RGSEEDVLQRFIIAIKAYS--ADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYVS 126 (241)
T ss_pred --CCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf --3888999999999997358--87699960899877889999999999865986013