HHsearch alignment for GI: 254780942 and conserved domain: PRK00155
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed.
Probab=99.84 E-value=6.6e-20 Score=131.73 Aligned_cols=223 Identities=17% Similarity=0.239 Sum_probs=148.3
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECCCH-HHHHHHHCCCCCEEEEEECC
Q ss_conf 987408999458877232788874412588485799999999977-9977999957988-99999730269728999859
Q gi|254780942|r 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGYGA-EEITRINFPPTLSVEYYIQD 78 (442)
Q Consensus 1 m~~~~~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~-g~~~ivvv~~~~~-e~i~~~~~~~~~~i~~v~q~ 78 (442)
T Consensus 1 ~m~~i~aIIlAaG~G~R~g~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~IvvV~~~~~~~~~~~~~~~~~~~i~~v~GG 80 (228)
T PRK00155 1 MMPMVYAIIPAAGIGSRMGADRPKQYLPLGGKPILEHTLEAFLAHPAIDEIIVVVPPDDTEYAKLLLAKFDKRIKVVAGG 80 (228)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 98757999937720513786799655668956999999999975999897999957626999999987449857997697
Q ss_pred CCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEC-CCCCEECCC
Q ss_conf 9886144664100001234460589851541115332200000013586100100101221574404202-333100100
Q gi|254780942|r 79 CQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIK-NNEIIAIRE 157 (442)
Q Consensus 79 ~~~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i~E 157 (442)
T Consensus 81 ~tR--~~Sv~ngL~~l~~-~~~VlIHDaARP~is~~~i~~li~~~~~-~~~~ip~~p~~DT----ik~~~~~~~i~~tl~ 152 (228)
T PRK00155 81 AER--QDSVLNGLQALPD-DDWVLVHDAARPFLTPDDIDRLIEAAEE-YGAAILAVPVRDT----IKRVDAGGFIVDTPD 152 (228)
T ss_pred HHH--HHHHHHHHHHHCC-CCEEEEECCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCC----EEEECCCCCEEEECC
T ss_conf 039--9999999998403-9979997066768999999999999984-6984698760241----789658981553035
Q ss_pred CCCCCCCCCCCCCCCCC-HHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCCCC
Q ss_conf 14667542100035560-01112501467775328887400111211489999730771799917214301112100000
Q gi|254780942|r 158 ENDATDEERKIHYCNSG-LMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSL 236 (442)
Q Consensus 158 k~d~~~~~~~~~lin~G-iY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L~~ 236 (442)
T Consensus 153 R---------~~l~~~QTPQ~F~~~~l~~a~~~~~~~----~~~~TDd~sl~~~~g~~v~~v~G~~~N-~KIT~~eDL~~ 218 (228)
T PRK00155 153 R---------SGLWAAQTPQGFRVELLKEALARALAE----GFTITDDASAVEWLGKPVRLVEGRYDN-IKVTTPEDLAL 218 (228)
T ss_pred C---------HHEEEEECCCCCCHHHHHHHHHHHHHC----CCCCCCHHHHHHHCCCCEEEEECCCCC-CCCCCHHHHHH
T ss_conf 1---------443665288532599999999999875----998778999999869976999668543-77289999999
Q ss_pred CCCCCCCCC
Q ss_conf 012222211
Q gi|254780942|r 237 IENIWQSRY 245 (442)
Q Consensus 237 ~~~~~~~~~ 245 (442)
T Consensus 219 ae~ll~~r~ 227 (228)
T PRK00155 219 AEAILKRRI 227 (228)
T ss_pred HHHHHHHHC
T ss_conf 999998531