HHsearch alignment for GI: 254780942 and conserved domain: PRK13627
>PRK13627 carnitine operon protein CaiE; Provisional.
Probab=99.87 E-value=5.8e-22 Score=143.44 Aligned_cols=72 Identities=28% Similarity=0.451 Sum_probs=64.8
Q ss_pred CCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCC--CCCCCEEEECCCEEEE
Q ss_conf 63988998997980883445775456298788798869989378398899899778357664--3698689813560770
Q gi|254780942|r 354 DSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQD--TPENSLVFARSRQIVK 431 (442)
Q Consensus 354 d~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~ig~~~~i~ag~~v~~d--v~~~~~v~~~~~~~~~ 431 (442)
T Consensus 71 ~~~IG~~vtIGH~ail--------hgc~Igd~~lIGmgavVldga~Ig~~~iI~AgslV~~g~~ip~~~L~~G~PAk~vR 142 (196)
T PRK13627 71 DTIVGENGHIGHGAIL--------HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVR 142 (196)
T ss_pred CCEECCCEEECCCEEE--------EEEEEECCCEECCCCEEECCCEECCCCEECCCCEECCCCCCCCCCEEEECCEEEEE
T ss_conf 8588898058787299--------63499489788469799288899999899768645799493898199877816811
Q ss_pred CC
Q ss_conf 77
Q gi|254780942|r 432 ED 433 (442)
Q Consensus 432 ~~ 433 (442)
T Consensus 143 ~l 144 (196)
T PRK13627 143 SV 144 (196)
T ss_pred CC
T ss_conf 49