HHsearch alignment for GI: 254780942 and conserved domain: TIGR02092
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit; InterPro: IPR011832 This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, IPR011831 from INTERPRO) in a subset of bacteria that use GlgC for glycogen biosynthesis.; GO: 0005978 glycogen biosynthetic process.
Probab=99.90 E-value=2.2e-23 Score=151.53 Aligned_cols=344 Identities=15% Similarity=0.198 Sum_probs=194.4
Q ss_pred CCCEEEEECCCCCCCCCCC---CCCCEEEECCE-EHHHHHHHHHHHCCCCEEEEEECCCHH-HHHHHHCCC---CCE---
Q ss_conf 7408999458877232788---87441258848-579999999997799779999579889-999973026---972---
Q gi|254780942|r 3 RKRLAIVLAAGRGHRMKSS---SSKVLQKIAGK-PMISHVMETIAAAGIENVALVLGYGAE-EITRINFPP---TLS--- 71 (442)
Q Consensus 3 ~~~~AiILAaG~GtRl~p~---~pKpLlpi~gk-pli~~~i~~l~~~g~~~ivvv~~~~~e-~i~~~~~~~---~~~--- 71 (442)
T Consensus 1 ~~~~aIi~l~~~~~~l~~LT~~Rp~A~~PfgGrYRlIDF~LSn~~NAgI~~v~~~~~~~~~~Sl~DHLg~G~eWdL~r~~ 80 (383)
T TIGR02092 1 NKMSAIINLTESKKNLSPLTKVRPVASLPFGGRYRLIDFPLSNMVNAGIRNVAVFFKNKERRSLFDHLGSGREWDLNRKR 80 (383)
T ss_pred CCEEEEEECCCCCHHCCCHHHHCCCEEECCCCEEEEEECCHHCCCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCC
T ss_conf 93589973578820113145508703323586477883010023103600224652666653152213486883611025
Q ss_pred -EEEEE----CCC---CCCH-----HHHHHHCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEC
Q ss_conf -89998----599---8861-----4466410000123-44605898515411153322000000135-86100100101
Q gi|254780942|r 72 -VEYYI----QDC---QQGT-----AHAVLTAQDAIKP-GYDDVIIMYGDVPLVSSHTLKKAMDKIAQ-GYSIAVVGFNA 136 (442)
Q Consensus 72 -i~~v~----q~~---~~GT-----a~Ai~~a~~~l~~-~~~~~lVl~GD~~li~~~~l~~l~~~~~~-~~~~~i~~~~~ 136 (442)
T Consensus 81 ~glF~~pP~~~~~~~~~~~~kaall~~~~~~~l~fl~rS~~~y~V~~~s~~--v~NiDl~~~l~~H~~~~~~iT~VYKkv 158 (383)
T TIGR02092 81 DGLFLFPPKYNDRDDVSEGGKAALLKRYFSNNLEFLKRSTSEYVVVLNSHM--VCNIDLKAVLKRHEETGKDITVVYKKV 158 (383)
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCE--EEECCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 752770687686432345633778899998876787508997189854745--783028999999874489668997347
Q ss_pred CC--CCC-C-CEEEEC-CCCCEECC--CCCCCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHH-HHHHHHHH
Q ss_conf 22--157-4-404202-33310010--01466754210003556001112501467775328887400111-21148999
Q gi|254780942|r 137 DN--PKG-Y-GRLLIK-NNEIIAIR--EENDATDEERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYY-LTDIIEKA 208 (442)
Q Consensus 137 ~d--p~~-y-GvV~~d-~~~v~~i~--Ek~d~~~~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~y-ltDii~~l 208 (442)
T Consensus 159 ~~~~~~~~~c~~L~~De~g~v~s~~Pms~~~~~~~~e~~n-~Sl~~yi~~t~lLiell~~~~~~---g~~~~l~~~~~~~ 234 (383)
T TIGR02092 159 KKADLSEEDCTILKFDEKGEVKSIGPMSVAKNLNKEEEEN-LSLDIYILSTELLIELLYECIQK---GKKTSLEELIREN 234 (383)
T ss_pred CCCCCCCCCCCEEEECCCCCEEEEECEEEECCCCCHHHHH-HHHHHEEECHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_conf 8467762357278863678568863200002676134443-20100242668999999987631---5567999999999
Q ss_pred HHHHCCEEEEEECHHHEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEECCCEE-EEEEEEECCCCCEECCCCCCCCC
Q ss_conf 973077179991721430111210000001-2222211221222332102115279-94112331784100122322344
Q gi|254780942|r 209 RLDGKSIASIDVKEQEVCGCNNRYELSLIE-NIWQSRYRRQMMISGVTMIAPETVF-LSHDTIIQPDTVIEPHVFFGCGV 286 (442)
Q Consensus 209 ~~~g~~i~~~~~~~~~~~gv~~~~~L~~~~-~~~~~~~~~~~l~~gv~~~~p~~~~-i~~~~~I~~~~~I~~~~~Ig~~~ 286 (442)
T Consensus 235 l~~-~~~~aYEY~GYl~~-I~s~~sYY~aNM~lL~~~~f~~-------------LF~~~~~rpIYTKvKdE~PT~y~~~S 299 (383)
T TIGR02092 235 LKE-LNINAYEYKGYLAN-INSVKSYYKANMDLLEPKIFQS-------------LFYISQSRPIYTKVKDEPPTYYAETS 299 (383)
T ss_pred HHH-CCCCCCEEEEEEEE-ECCHHHHHHHHHHHHHHHHHHH-------------HHCCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 986-47543303422111-1016789887288631687688-------------70778887147873588887446787
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEECCC
Q ss_conf 20002111631343321211121002134432000002586443202310211247854487455566398899899798
Q gi|254780942|r 287 SIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAG 366 (442)
Q Consensus 287 ~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i~~g~~i~~~~~igd~~iG~~~~ig~g 366 (442)
T Consensus 300 ~V~-nSl~anGc~IEG~V--------------~NSil~R~V~v~kd~~~kn~iimq~~~Ig~ga~L~~vI~DK~~~I~~n 364 (383)
T TIGR02092 300 KVE-NSLVANGCIIEGKV--------------ENSILSRGVYVGKDALIKNSIIMQRTVIGEGAHLENVIIDKDVVIEPN 364 (383)
T ss_pred EEE-EEEEECCCEECCEE--------------EEEEEECCEEECCCCEEEEEEECCCCEECCCCEEEEEEECCCCEECCC
T ss_conf 676-66676263561488--------------557985541872786787547758877787865615886576287887
Q ss_pred EEECCCCCCCCCCCEECCC
Q ss_conf 0883445775456298788
Q gi|254780942|r 367 TITCNYDGTHKYKTHINEN 385 (442)
Q Consensus 367 ~i~~n~~g~~~~~~~ig~~ 385 (442)
T Consensus 365 ~~~---~G~~e~PlVi~Kg 380 (383)
T TIGR02092 365 EKI---AGTSEQPLVISKG 380 (383)
T ss_pred EEE---EECCCCCEEECCC
T ss_conf 068---5247886264487