HHsearch alignment for GI: 254780942 and conserved domain: TIGR02623
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase; InterPro: IPR013446 Glucose-1-phosphate cytidylyltransferases, also known as CDP-glucose pyrophosphorylase, are the product of the rfbF gene and produce CDP-D-glucose..
Probab=100.00 E-value=4.8e-33 Score=206.52 Aligned_cols=226 Identities=19% Similarity=0.269 Sum_probs=174.5
Q ss_pred CEEEEECCCCCCCCCC---CCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCC---E-------
Q ss_conf 0899945887723278---88744125884857999999999779977999957988999997302697---2-------
Q gi|254780942|r 5 RLAIVLAAGRGHRMKS---SSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTL---S------- 71 (442)
Q Consensus 5 ~~AiILAaG~GtRl~p---~~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~~~~---~------- 71 (442)
T Consensus 1 MKaViLAGGlGTRisEEt~lrPKPM~EiGgkPIlWHI~k~Y~~~Gi~~FiiC~GYkGy~IKeyF~NY~l~~SDvT~~l~~ 80 (256)
T TIGR02623 1 MKAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSAHGIKEFIICLGYKGYVIKEYFANYFLHMSDVTIDLED 80 (256)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCEEECCEEEEEECC
T ss_conf 93799717864432243535897607767963778899999752833027885343322010010632311316787515
Q ss_pred --------------EEEEECCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf --------------899985998861446641000012344605898515411153322000000135861001001012
Q gi|254780942|r 72 --------------VEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNAD 137 (442)
Q Consensus 72 --------------i~~v~q~~~~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~ 137 (442)
T Consensus 81 n~~~~H~~~~EPW~VTLvDTG~~t~TGGRl~Rv~~~~~~-d~~Fc~TYGDG--v~~~~I~~~~~~H~~~g~~AT~tAv~P 157 (256)
T TIGR02623 81 NTIEVHEKRAEPWRVTLVDTGESTQTGGRLKRVREYLED-DEAFCLTYGDG--VADIDIKALIAFHRKHGKKATVTAVQP 157 (256)
T ss_pred CEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCC-CCCEEEEECCC--CCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 704531213897168888568776678327889998437-87689871585--033258999999886298067886078
Q ss_pred CCCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEE
Q ss_conf 21574404202333100100146675421000355600111250146777532888740011121148999973077179
Q gi|254780942|r 138 NPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIAS 217 (442)
Q Consensus 138 dp~~yGvV~~d~~~v~~i~Ek~d~~~~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~ 217 (442)
T Consensus 158 -PGRfGaL~~~~~~V~~F~EKP~gd~-----g~iNGGFFVL~P~V----~d~I~~D~~~wE---~~~L~~L~~~g~-L~a 223 (256)
T TIGR02623 158 -PGRFGALELEGESVTSFQEKPLGDG-----GLINGGFFVLNPSV----LDLIDGDATVWE---SEPLETLAQRGE-LSA 223 (256)
T ss_pred -CCCEEEEEECCCCEEEECCCCCCCC-----EEEECCEEEECCCE----EEEECCCCEEEC---CHHHHHHHHCCC-CEE
T ss_conf -8830236772551111014748898-----16806568748320----202248850201---037899974488-137
Q ss_pred EEECHHHEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9917214301112100000012222211221
Q gi|254780942|r 218 IDVKEQEVCGCNNRYELSLIENIWQSRYRRQ 248 (442)
Q Consensus 218 ~~~~~~~~~gv~~~~~L~~~~~~~~~~~~~~ 248 (442)
T Consensus 224 Y~H~GFW-~PMDTLRDk~~L~~LW~~~~APW 253 (256)
T TIGR02623 224 YEHSGFW-QPMDTLRDKNKLEELWESNRAPW 253 (256)
T ss_pred EEECCCC-CCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 8517756-85222566799998875378884