HHsearch alignment for GI: 254780942 and conserved domain: TIGR03536
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.65 E-value=0.00013 Score=44.73 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=25.3
Q ss_pred EECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEE
Q ss_conf 988998997980883445775456298788798869989378398
Q gi|254780942|r 356 VVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITI 400 (442)
Q Consensus 356 ~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~i 400 (442)
T Consensus 252 siG~~cLlGANsg~---------GI~LGD~C~veaGlyvtagtkv 287 (341)
T TIGR03536 252 SVGEGCLLGANAGI---------GIPLGDRCTVEAGLYITAGTKV 287 (341)
T ss_pred EECCCCCCCCCCCC---------CCCCCCCCEEECCEEEECCCEE
T ss_conf 88732201444555---------7424898478124499279679