HHsearch alignment for GI: 254780942 and conserved domain: TIGR03584
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.22 E-value=9.8e-11 Score=79.53 Aligned_cols=209 Identities=19% Similarity=0.195 Sum_probs=127.1
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHCCCCCEEEEEECCC----C
Q ss_conf 89994588772327888744125884857999999999779-977999957988999997302697289998599----8
Q gi|254780942|r 6 LAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAG-IENVALVLGYGAEEITRINFPPTLSVEYYIQDC----Q 80 (442)
Q Consensus 6 ~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~g-~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~----~ 80 (442)
T Consensus 1 laiIPaR~gSkri-~~--KN~~~~~g~pLi~~~i~~~~~s~~~d~i~vST--D~~~i~~ia~~~~~~~~~~Rp~~ls~d~ 75 (222)
T TIGR03584 1 IAIIPARGGSKRI-PR--KNIKPFCGKPMIAYSIEAALNSGLFDEVVVST--DDEEIAEVAKSYGASVPFMRPAELSDDF 75 (222)
T ss_pred CEEECCCCCCCCC-CC--CCHHHHCCCCHHHHHHHHHHHCCCCCEEEECC--CHHHHHHHHHCCCCCCEEECCHHHCCCC
T ss_conf 9898437788767-86--01256589285999999998579965388727--8899875552169864251865555886
Q ss_pred CCHHHHHHHCCCCCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCEEEECCC-CCCCCEEEECCCCCEECC
Q ss_conf 8614466410000123--44605898515411153322000000135-8610010010122-157440420233310010
Q gi|254780942|r 81 QGTAHAVLTAQDAIKP--GYDDVIIMYGDVPLVSSHTLKKAMDKIAQ-GYSIAVVGFNADN-PKGYGRLLIKNNEIIAIR 156 (442)
Q Consensus 81 ~GTa~Ai~~a~~~l~~--~~~~~lVl~GD~~li~~~~l~~l~~~~~~-~~~~~i~~~~~~d-p~~yGvV~~d~~~v~~i~ 156 (442)
T Consensus 76 ~~~~~vi~~~l~~~~~~~~~d~i~~l~pTsP~r~~~~I~~ai~~~~~~~~ds~~sv~~~~~~~~~-~~~~~~~~~~~~~~ 154 (222)
T TIGR03584 76 TGTAPVVAHAIERLQLQKQPDHACCIYATAPLLQAKILKEAFELLKQPNKHFVFTVTEFAFPIQR-AFSLKENGGVTMFF 154 (222)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH-HEEECCCCCEEECC
T ss_conf 21459999999999865899989995489761589999999999972699855065337768589-37986799463347
Q ss_pred CCCCCCCCC-C-CCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCC
Q ss_conf 014667542-1-00035560011125014677753288874001112114899997307717999172143011121000
Q gi|254780942|r 157 EENDATDEE-R-KIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYEL 234 (442)
Q Consensus 157 Ek~d~~~~~-~-~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L 234 (442)
T Consensus 155 ~~~~~~r~Qdl~~~y~~~G~~y~~~~~~~~~---~-------~~-----~------~~~~~~~~~~~~~~siDID~~~D~ 213 (222)
T TIGR03584 155 PEHYNTRSQDLEEAYHDAGQFYWGKSQAWLE---S-------GP-----I------FSPHSIPIILPRHLVQDIDTLEDW 213 (222)
T ss_pred HHHHHHHHHHCCCCEEECCEEEEEEHHHHHH---C-------CC-----C------CCCCEEEEEECCCCCCCCCCHHHH
T ss_conf 4552024442443375447899988999984---4-------97-----0------289879999899862899999999
Q ss_pred CCCCCCC
Q ss_conf 0001222
Q gi|254780942|r 235 SLIENIW 241 (442)
Q Consensus 235 ~~~~~~~ 241 (442)
T Consensus 214 ~~Ae~l~ 220 (222)
T TIGR03584 214 ERAELLY 220 (222)
T ss_pred HHHHHHH
T ss_conf 9999986