HHsearch alignment for GI: 254780942 and conserved domain: cd02517
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.85 E-value=6.4e-21 Score=137.49 Aligned_cols=225 Identities=21% Similarity=0.297 Sum_probs=150.9
Q ss_pred CCEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 408999458877232788874412588485799999999977-9977999957988999997302697289998599886
Q gi|254780942|r 4 KRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQQG 82 (442)
Q Consensus 4 ~~~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~-g~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~~G 82 (442)
T Consensus 1 k~i~iIPAR~~S~Rl-p~--K~L~~I~G~pmI~~v~~~a~~s~~~d~V~VAT--Dd~eI~~~~~~~g~~~imT~~~h~~G 75 (239)
T cd02517 1 KVIVVIPARYASSRL-PG--KPLADIAGKPMIQHVYERAKKAKGLDEVVVAT--DDERIADAVESFGGKVVMTSPDHPSG 75 (239)
T ss_pred CEEEEECCCCCCCCC-CC--CCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEC--CCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 989997588768789-99--73045399598999999999669988499964--82655533214797401046433562
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCEEEECC------CCCCCCEEEECCCCCEE
Q ss_conf 14466410000123446058985154111533220000001358--61001001012------21574404202333100
Q gi|254780942|r 83 TAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQG--YSIAVVGFNAD------NPKGYGRLLIKNNEIIA 154 (442)
Q Consensus 83 Ta~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~~--~~~~i~~~~~~------dp~~yGvV~~d~~~v~~ 154 (442)
T Consensus 76 T-dRi~ea~~~l~~~~D~iinvQGDePli~p~~I~~~i~~~~~~~~~~v~t~~~~i~~~~~~~~~n~VKvv~~~~~~aly 154 (239)
T cd02517 76 T-DRIAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALY 154 (239)
T ss_pred C-HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHCCCCCEEEEECCCCCCHH
T ss_conf 1-599999997199889899951875678999999999998528875598740236998894189963999789885110
Q ss_pred CCCCCCCCC---CCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHHHCCEEEEEECHHHEECCC
Q ss_conf 100146675---42100035560011125014677753288874001112114899--9973077179991721430111
Q gi|254780942|r 155 IREENDATD---EERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEK--ARLDGKSIASIDVKEQEVCGCN 229 (442)
Q Consensus 155 i~Ek~d~~~---~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~--l~~~g~~i~~~~~~~~~~~gv~ 229 (442)
T Consensus 155 fSRs~IP~~~~~~~~~~~~khiGIy~f~~~~L~~f~-~~~~s~l--E--~~E~lEqLR~leng~~I~~~~~~~~-~~~VD 228 (239)
T cd02517 155 FSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFA-ALPPSPL--E--QIESLEQLRALENGYKIKVVETDHE-SIGVD 228 (239)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHH-CCCCCHH--H--HHHHHHHHHHHHCCCEEEEEEECCC-CCCCC
T ss_conf 334788643456555041037765563399999987-3799825--7--7760899999983980689996999-98988
Q ss_pred CCCCCCCCCCC
Q ss_conf 21000000122
Q gi|254780942|r 230 NRYELSLIENI 240 (442)
Q Consensus 230 ~~~~L~~~~~~ 240 (442)
T Consensus 229 t~eDl~~veki 239 (239)
T cd02517 229 TPEDLERVEAL 239 (239)
T ss_pred CHHHHHHHHCC
T ss_conf 99999999709