HHsearch alignment for GI: 254780942 and conserved domain: cd02517

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.85  E-value=6.4e-21  Score=137.49  Aligned_cols=225  Identities=21%  Similarity=0.297  Sum_probs=150.9

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf             408999458877232788874412588485799999999977-9977999957988999997302697289998599886
Q gi|254780942|r    4 KRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQQG   82 (442)
Q Consensus         4 ~~~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~-g~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~~G   82 (442)
T Consensus         1 k~i~iIPAR~~S~Rl-p~--K~L~~I~G~pmI~~v~~~a~~s~~~d~V~VAT--Dd~eI~~~~~~~g~~~imT~~~h~~G   75 (239)
T cd02517           1 KVIVVIPARYASSRL-PG--KPLADIAGKPMIQHVYERAKKAKGLDEVVVAT--DDERIADAVESFGGKVVMTSPDHPSG   75 (239)
T ss_pred             CEEEEECCCCCCCCC-CC--CCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEC--CCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             989997588768789-99--73045399598999999999669988499964--82655533214797401046433562


Q ss_pred             HHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCEEEECC------CCCCCCEEEECCCCCEE
Q ss_conf             14466410000123446058985154111533220000001358--61001001012------21574404202333100
Q gi|254780942|r   83 TAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQG--YSIAVVGFNAD------NPKGYGRLLIKNNEIIA  154 (442)
Q Consensus        83 Ta~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~~--~~~~i~~~~~~------dp~~yGvV~~d~~~v~~  154 (442)
T Consensus        76 T-dRi~ea~~~l~~~~D~iinvQGDePli~p~~I~~~i~~~~~~~~~~v~t~~~~i~~~~~~~~~n~VKvv~~~~~~aly  154 (239)
T cd02517          76 T-DRIAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALY  154 (239)
T ss_pred             C-HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHCCCCCEEEEECCCCCCHH
T ss_conf             1-599999997199889899951875678999999999998528875598740236998894189963999789885110


Q ss_pred             CCCCCCCCC---CCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHHHCCEEEEEECHHHEECCC
Q ss_conf             100146675---42100035560011125014677753288874001112114899--9973077179991721430111
Q gi|254780942|r  155 IREENDATD---EERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEK--ARLDGKSIASIDVKEQEVCGCN  229 (442)
Q Consensus       155 i~Ek~d~~~---~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~--l~~~g~~i~~~~~~~~~~~gv~  229 (442)
T Consensus       155 fSRs~IP~~~~~~~~~~~~khiGIy~f~~~~L~~f~-~~~~s~l--E--~~E~lEqLR~leng~~I~~~~~~~~-~~~VD  228 (239)
T cd02517         155 FSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFA-ALPPSPL--E--QIESLEQLRALENGYKIKVVETDHE-SIGVD  228 (239)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHH-CCCCCHH--H--HHHHHHHHHHHHCCCEEEEEEECCC-CCCCC
T ss_conf             334788643456555041037765563399999987-3799825--7--7760899999983980689996999-98988


Q ss_pred             CCCCCCCCCCC
Q ss_conf             21000000122
Q gi|254780942|r  230 NRYELSLIENI  240 (442)
Q Consensus       230 ~~~~L~~~~~~  240 (442)
T Consensus       229 t~eDl~~veki  239 (239)
T cd02517         229 TPEDLERVEAL  239 (239)
T ss_pred             CHHHHHHHHCC
T ss_conf             99999999709