HHsearch alignment for GI: 254780942 and conserved domain: cd02526
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=95.69 E-value=0.13 Score=27.64 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=62.8
Q ss_pred EHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCCCC-CCCEEEEEECCCCCC
Q ss_conf 5799999999977997799995798899999730269728999859988614466410000123-446058985154111
Q gi|254780942|r 33 PMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKP-GYDDVIIMYGDVPLV 111 (442)
Q Consensus 33 pli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~~GTa~Ai~~a~~~l~~-~~~~~lVl~GD~~li 111 (442)
T Consensus 11 ~~l~~~L~sl~~q-~~eIiVVDN~S~d~~~~~~~~~~~~v~~i~~~~N~G~a~g~N~Gi~~a~~~~~d~i~~ln~D~-~~ 88 (237)
T cd02526 11 SKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQDS-VP 88 (237)
T ss_pred HHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCHHHHCCCCCEEEEECCCC-CC
T ss_conf 9999999976637-998999969889028999986199869998999778588727430334117977899935756-55
Q ss_pred CCCCCCCCCCCC---CCCCCCCCEEEE
Q ss_conf 533220000001---358610010010
Q gi|254780942|r 112 SSHTLKKAMDKI---AQGYSIAVVGFN 135 (442)
Q Consensus 112 ~~~~l~~l~~~~---~~~~~~~i~~~~ 135 (442)
T Consensus 89 ~~~~l~~l~~~~~~~~~~~~vg~~~p~ 115 (237)
T cd02526 89 PPDMVEKLLAYKILSDKNSNIGAVGPR 115 (237)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 905999999999852227988999717