HHsearch alignment for GI: 254780942 and conserved domain: cd02538

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00  E-value=0  Score=311.86  Aligned_cols=229  Identities=23%  Similarity=0.313  Sum_probs=190.9

Q ss_pred             CEEEEECCCCCCCCCCC---CCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHCC---CCCEEEEEEC
Q ss_conf             08999458877232788---874412588485799999999977997799995798-8999997302---6972899985
Q gi|254780942|r    5 RLAIVLAAGRGHRMKSS---SSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYG-AEEITRINFP---PTLSVEYYIQ   77 (442)
Q Consensus         5 ~~AiILAaG~GtRl~p~---~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~-~e~i~~~~~~---~~~~i~~v~q   77 (442)
T Consensus         1 MkavILAgG~GtRL~PlT~~~PKpLlpi~~kPli~~~l~~l~~~Gi~~i~iv~~~~~~~~~~~~~~~~~~~~~~i~y~~e   80 (240)
T cd02538           1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQ   80 (240)
T ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCEECCEEEHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf             90999888786678732379874327799997189999999985996231002342699999997447637527999998


Q ss_pred             CCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCEEEEC-CCCCEEC
Q ss_conf             99886144664100001234460589851541115332200000013-586100100101221574404202-3331001
Q gi|254780942|r   78 DCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIA-QGYSIAVVGFNADNPKGYGRLLIK-NNEIIAI  155 (442)
Q Consensus        78 ~~~~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~-~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i  155 (442)
T Consensus        81 ~~~~Gt~~al~~a~~~~~~--~~~~v~~gD~-i~~~~~~~~~l~~~~~~~~~~ti~~~~v~~~~~yGvv~~d~~~~v~~~  157 (240)
T cd02538          81 PKPGGLAQAFIIGEEFIGD--DPVCLILGDN-IFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSI  157 (240)
T ss_pred             ECCCCCCHHHHHHHHHCCC--CCEEEECCCC-EECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf             6268631378888876289--8734443874-010656899999999666884787777236113672311478857898


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCCC
Q ss_conf             00146675421000355600111250146777532888740011121148999973077179991721430111210000
Q gi|254780942|r  156 REENDATDEERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELS  235 (442)
Q Consensus       156 ~Ek~d~~~~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L~  235 (442)
T Consensus       158 ~EKP~----~~~s~~~~~GiYi~~~~-i~~~i~~~~~~-~~ge~~i~d~~~~~i~~g~~~~~~~~~~~~W~DiGtpe~~~  231 (240)
T cd02538         158 EEKPK----KPKSNYAVTGLYFYDND-VFEIAKQLKPS-ARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLL  231 (240)
T ss_pred             EECCC----CCCCCEEEEEEEEECHH-HHHHHHHCCCC-CCCEEEHHHHHHHHHHCCCCEEEEECCCCEEEECCCHHHHH
T ss_conf             88999----99988799999998989-99999858999-99907588999999985997399968998089799999999


Q ss_pred             CCCCCCC
Q ss_conf             0012222
Q gi|254780942|r  236 LIENIWQ  242 (442)
Q Consensus       236 ~~~~~~~  242 (442)
T Consensus       232 ~An~~i~  238 (240)
T cd02538         232 EASNFVQ  238 (240)
T ss_pred             HHHHHHH
T ss_conf             9998896