HHsearch alignment for GI: 254780942 and conserved domain: cd03350
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.92 E-value=1.1e-24 Score=158.99 Aligned_cols=72 Identities=26% Similarity=0.495 Sum_probs=63.0
Q ss_pred CCEECCCCEECCCEEECC-CCCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEEEEC
Q ss_conf 639889989979808834-457754562987887988699893783988998997783576643698689813
Q gi|254780942|r 354 DSVVGKNVNIGAGTITCN-YDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLVFAR 425 (442)
Q Consensus 354 d~~iG~~~~ig~g~i~~n-~~g~~~~~~~ig~~~~iG~~~~i~~gv~ig~~~~i~ag~~v~~dv~~~~~v~~~ 425 (442)
T Consensus 49 ~~~IG~~v~I~~g~~i~g~~~p~~~~~v~IeD~~~IGa~a~V~~Gv~IG~~avIGAGsVVtkdvp~y~~~~g~ 121 (139)
T cd03350 49 CAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRETGE 121 (139)
T ss_pred CCEECCCCEECCCCEECCCCCCCCCCCCEECCCEEEEECCEEECCCEECCCCEECCCCEEECCCCCEEEECCC
T ss_conf 6699993289888678444257646886887995993099894687999998999798891898846823780