HHsearch alignment for GI: 254780942 and conserved domain: cd03350
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.73 E-value=1.6e-17 Score=118.09 Aligned_cols=128 Identities=16% Similarity=0.255 Sum_probs=72.2
Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCC
Q ss_conf 99411233178410012232234420002111631343321211121002134432000002586443202310211247
Q gi|254780942|r 263 FLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKE 342 (442)
Q Consensus 263 ~i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i~~ 342 (442)
T Consensus 9 ~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~-----~~Ig~~~~IG~~v~I~~g~~i~g~~~-------------p 70 (139)
T cd03350 9 IIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSW-----ATVGSCAQIGKNVHLSAGAVIGGVLE-------------P 70 (139)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCC-----CEECCCCEECCCCEECCCCEECCCCC-------------C
T ss_conf 98899999999899889998439898987278666-----60268669999328988867844425-------------7
Q ss_pred CCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEE
Q ss_conf 85448745556639889989979808834457754562987887988699893783988998997783576643698689
Q gi|254780942|r 343 GSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV 422 (442)
Q Consensus 343 g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~ig~~~~i~ag~~v~~dv~~~~~v 422 (442)
T Consensus 71 ~~~-------~~v~IeD~~~IGa~a~V~~-------Gv~IG~~avIGAGsVVtkdvp~--y~~-~~g~~~~~~~p~~~~~ 133 (139)
T cd03350 71 LQA-------TPVIIEDDVFIGANCEVVE-------GVIVGKGAVLAAGVVLTQSTPI--YDR-ETGEIYYGRVPPGSVV 133 (139)
T ss_pred CCC-------CCCEECCCEEEEECCEEEC-------CCEECCCCEECCCCEEECCCCC--EEE-ECCCEEECCCCCCCEE
T ss_conf 646-------8868879959930998946-------8799999899979889189884--682-3780970116998787
Q ss_pred EEC
Q ss_conf 813
Q gi|254780942|r 423 FAR 425 (442)
Q Consensus 423 ~~~ 425 (442)
T Consensus 134 ~~~ 136 (139)
T cd03350 134 VAG 136 (139)
T ss_pred CCC
T ss_conf 458