HHsearch alignment for GI: 254780942 and conserved domain: cd03350

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.73  E-value=1.6e-17  Score=118.09  Aligned_cols=128  Identities=16%  Similarity=0.255  Sum_probs=72.2

Q ss_pred             EEEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCC
Q ss_conf             99411233178410012232234420002111631343321211121002134432000002586443202310211247
Q gi|254780942|r  263 FLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKE  342 (442)
Q Consensus       263 ~i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i~~  342 (442)
T Consensus         9 ~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~-----~~Ig~~~~IG~~v~I~~g~~i~g~~~-------------p   70 (139)
T cd03350           9 IIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSW-----ATVGSCAQIGKNVHLSAGAVIGGVLE-------------P   70 (139)
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECCC-----CEECCCCEECCCCEECCCCEECCCCC-------------C
T ss_conf             98899999999899889998439898987278666-----60268669999328988867844425-------------7


Q ss_pred             CCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCCCCCCCEE
Q ss_conf             85448745556639889989979808834457754562987887988699893783988998997783576643698689
Q gi|254780942|r  343 GSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV  422 (442)
Q Consensus       343 g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~ig~~~~i~ag~~v~~dv~~~~~v  422 (442)
T Consensus        71 ~~~-------~~v~IeD~~~IGa~a~V~~-------Gv~IG~~avIGAGsVVtkdvp~--y~~-~~g~~~~~~~p~~~~~  133 (139)
T cd03350          71 LQA-------TPVIIEDDVFIGANCEVVE-------GVIVGKGAVLAAGVVLTQSTPI--YDR-ETGEIYYGRVPPGSVV  133 (139)
T ss_pred             CCC-------CCCEECCCEEEEECCEEEC-------CCEECCCCEECCCCEEECCCCC--EEE-ECCCEEECCCCCCCEE
T ss_conf             646-------8868879959930998946-------8799999899979889189884--682-3780970116998787


Q ss_pred             EEC
Q ss_conf             813
Q gi|254780942|r  423 FAR  425 (442)
Q Consensus       423 ~~~  425 (442)
T Consensus       134 ~~~  136 (139)
T cd03350         134 VAG  136 (139)
T ss_pred             CCC
T ss_conf             458