HHsearch alignment for GI: 254780942 and conserved domain: cd03351
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.82 E-value=3.6e-20 Score=133.26 Aligned_cols=148 Identities=23% Similarity=0.259 Sum_probs=65.7
Q ss_pred EEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCC------------CCCC
Q ss_conf 94112331784100122322344200021116313433-2121112100213443200000258------------6443
Q gi|254780942|r 264 LSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLE-GVHIGKKTIIGPFARIRQETTIEKN------------VRIG 330 (442)
Q Consensus 264 i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~i~~~s~i~~~------------~~Ig 330 (442)
T Consensus 2 IHptAiI~~~A~IG~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~IG 81 (254)
T cd03351 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIG 81 (254)
T ss_pred CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 18977969989999979999998999999999999997996891997977652560575347787676737986769979
Q ss_pred CEEEEE-CCCCCCCCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCC
Q ss_conf 202310-2112478544874555663988998997980883445775456298788798869989378398899899778
Q gi|254780942|r 331 NFCEVK-KATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASG 409 (442)
Q Consensus 331 ~~~ei~-~s~i~~g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~ig~~~~i~ag 409 (442)
T Consensus 82 ~~~~Ire~vtI~rgt~~~~----~~T~IG~~~~im~~~HIa-------Hdc~IG~~~iian~~~laGhv~Igd~a~IGg~ 150 (254)
T cd03351 82 DNNTIREFVTIHRGTAQGG----GVTRIGNNNLLMAYVHVA-------HDCVIGNNVILANNATLAGHVEIGDYAIIGGL 150 (254)
T ss_pred CCCEECCCCCCCCCCCCCC----CCEEECCCCEEEECCCCC-------CCCCCCCCEEEECCCCCCCCEEECCCCEECCC
T ss_conf 9778995330236743788----755978885782025445-------67733797599334455685698998489883
Q ss_pred CEECCCC--CCCCEE
Q ss_conf 3576643--698689
Q gi|254780942|r 410 SIITQDT--PENSLV 422 (442)
Q Consensus 410 ~~v~~dv--~~~~~v 422 (442)
T Consensus 151 ~~v~q~v~IG~~a~I 165 (254)
T cd03351 151 SAVHQFCRIGRHAMV 165 (254)
T ss_pred CEECCCCEECCCEEE
T ss_conf 677598199966199