HHsearch alignment for GI: 254780942 and conserved domain: cd04646
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.64 E-value=2.9e-16 Score=110.97 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=75.5
Q ss_pred EEEEEEECCCCCEECCCCCCCCC---CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCC
Q ss_conf 94112331784100122322344---200021116313433212111210021344320000025864432023102112
Q gi|254780942|r 264 LSHDTIIQPDTVIEPHVFFGCGV---SIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATI 340 (442)
Q Consensus 264 i~~~~~I~~~~~I~~~~~Ig~~~---~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i 340 (442)
T Consensus 14 iiGdV~IG~~~sI~p~avIrgd~g~I~IG~~-----------~nIqd~~~I~~~~~--~~~~~g~~~~IG~~-----~~i 75 (164)
T cd04646 14 IRGDVTIGPGTVVHPRATIIAEAGPIIIGEN-----------NIIEEQVTIVNKKP--KDPAEPKPMIIGSN-----NVF 75 (164)
T ss_pred EEEEEEECCCCEECCCCEEEECCCCEEECCC-----------CEECCCEEEECCCC--CCCCCCCCEEECCC-----CEE
T ss_conf 9821799999989957599814378898999-----------66669859941787--77789988798899-----888
Q ss_pred CCCCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCCC
Q ss_conf 4785448745556639889989979808834457754562987887988699893783988998997783576643
Q gi|254780942|r 341 KEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDT 416 (442)
Q Consensus 341 ~~g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~ig~~~~i~ag~~v~~dv 416 (442)
T Consensus 76 ~~g~~i------h~~~IG~~~lIg~~a~V~~-------ga~Ig~~ciIgags~V~~~~~ip~~slv~G~pa~~~~~ 138 (164)
T cd04646 76 EVGCKC------EALKIGNNNVFESKSFVGK-------NVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQ 138 (164)
T ss_pred CCCEEE------ECCEECCCCEECCCCEECC-------CCEECCCCEECCCCCCCCCCEECCCEEEECCCEEEEEC
T ss_conf 678199------5559767888968989999-------98999998999898928997929985997887478121