HHsearch alignment for GI: 254780942 and conserved domain: cd04649
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.68 E-value=5.1e-08 Score=64.08 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCE
Q ss_conf 21211121002134432000002586443202310211247854487455566398899899798088344577545629
Q gi|254780942|r 302 GVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTH 381 (442)
Q Consensus 302 ~~~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i~~g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ 381 (442)
T Consensus 31 nAgt~g~~Mie--grissgv~VG~~~diggGasi~G-~Ls~g~~~-------pi~Ig~ncliGAnsgi---------Gi~ 91 (147)
T cd04649 31 NAGTLGNCMVE--GRISSGVIVGKGSDVGGGASIMG-TLSGGGNN-------VISIGKRCLLGANSGI---------GIS 91 (147)
T ss_pred CCCCCCCCEEE--EEEEECEEECCCCCCCCCCEEEE-ECCCCCCC-------CEEECCCEEECCCCCC---------CEE
T ss_conf 66306661687--67851569899833278617878-71678823-------5698875076146545---------848
Q ss_pred ECCCCEECCCCEEECCEEE
Q ss_conf 8788798869989378398
Q gi|254780942|r 382 INENAFIGSNSSLIAPITI 400 (442)
Q Consensus 382 ig~~~~iG~~~~i~~gv~i 400 (442)
T Consensus 92 lGd~cvv~aGlyi~~gTki 110 (147)
T cd04649 92 LGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred ECCCCEEECCEEECCCCEE
T ss_conf 6898688244598399789