HHsearch alignment for GI: 254780942 and conserved domain: cd04652
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.35 E-value=1.6e-12 Score=89.77 Aligned_cols=80 Identities=24% Similarity=0.408 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCEEC
Q ss_conf 21112100213443200000258644320231021124785448745556639889989979808834457754562987
Q gi|254780942|r 304 HIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHIN 383 (442)
Q Consensus 304 ~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i~~g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig 383 (442)
T Consensus 1 vIG~~~~Ig~~~~I-~~SvIG~nc~Ig~~~~i~~sii~~~v~I~~~~~i~~-------------------------sIIg 54 (81)
T cd04652 1 LVGENTQVGEKTSI-KRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN-------------------------CIIG 54 (81)
T ss_pred CCCCCCEECCCCEE-ECCEECCCCEECCCCEEECCEEECCCEECCCCEEEC-------------------------CEEE
T ss_conf 98798899999989-679997999999996896899969879899989974-------------------------9990
Q ss_pred CCCEECCCCEEECCEEECCCCEECCCC
Q ss_conf 887988699893783988998997783
Q gi|254780942|r 384 ENAFIGSNSSLIAPITIGQGTYVASGS 410 (442)
Q Consensus 384 ~~~~iG~~~~i~~gv~ig~~~~i~ag~ 410 (442)
T Consensus 55 ~~~~Ig~~~~l-~~~vig~~~~V~~gt 80 (81)
T cd04652 55 NGAVIGEKCKL-KDCLVGSGYRVEAGT 80 (81)
T ss_pred CCCEECCCCEE-ECCEECCCCEECCCC
T ss_conf 97999999999-373988998989898