HHsearch alignment for GI: 254780942 and conserved domain: cd05636
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.83 E-value=1.7e-20 Score=135.06 Aligned_cols=124 Identities=11% Similarity=0.231 Sum_probs=72.6
Q ss_pred EEEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCC
Q ss_conf 994112331784100122322344200021116313433-2121112100213443200000258644320231021124
Q gi|254780942|r 263 FLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLE-GVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIK 341 (442)
Q Consensus 263 ~i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i~ 341 (442)
T Consensus 13 ~I~~~v~Ig~~a~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~IG~~~~IG~~~~I~-~~vi~~~~~i~~~~~ig~siIG 91 (163)
T cd05636 13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK-NSIIMDGTKVPHLNYVGDSVLG 91 (163)
T ss_pred EECCCEEECCCCEECCCCEEECCEEECCCCEEEECCCCCCCEEECCEEEECCCEEEC-CCCCCCCCCCCCCCEECCCEEC
T ss_conf 998981999999999999997975998998993641226985861301205512421-2401478432775687772992
Q ss_pred CCCCCCCCCCCC-------------------------CCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEE
Q ss_conf 785448745556-------------------------63988998997980883445775456298788798869989
Q gi|254780942|r 342 EGSKINHLSYVG-------------------------DSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSL 394 (442)
Q Consensus 342 ~g~~i~~~~~ig-------------------------d~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i 394 (442)
T Consensus 92 ~~v~IGagtvi~n~~~~~~~~~v~~~~~~~~~~~~~~G~vIGd~~~IG~ns~I~~-------G~~IG~~a~IgaGsvV 162 (163)
T cd05636 92 ENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNP-------GVKIGPGSWVYPGCVV 162 (163)
T ss_pred CCCEECCCEEEECCCCCCCCEEEEECCEEECCCCEECCCEECCCCEECCCCEECC-------CEEECCCCEECCCCEE
T ss_conf 9969889837817767886347840770623677040779779979998989869-------9599999899999796