HHsearch alignment for GI: 254780942 and conserved domain: cd05787

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.40  E-value=8.7e-13  Score=91.21  Aligned_cols=78  Identities=22%  Similarity=0.355  Sum_probs=53.4

Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCEEC
Q ss_conf             21112100213443200000258644320231021124785448745556639889989979808834457754562987
Q gi|254780942|r  304 HIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHIN  383 (442)
Q Consensus       304 ~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i~~g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig  383 (442)
T Consensus         1 vIG~~t~Ig~~~~I-~~svIG~nc~Ig~~~~I~~svi~d~~-----------~Ig~~~~i~--------------~siI~   54 (79)
T cd05787           1 VIGRGTSIGEGTTI-KNSVIGRNCKIGKNVVIDNSYIWDDV-----------TIEDGCTIH--------------HSIVA   54 (79)
T ss_pred             CCCCCCEECCCCEE-ECCEECCCCEECCCCEEECCEEECCC-----------EECCCCEEC--------------CCEEC
T ss_conf             99998999999999-59998999999999889489991978-----------999999990--------------89997


Q ss_pred             CCCEECCCCEEECCEEECCCCEEC
Q ss_conf             887988699893783988998997
Q gi|254780942|r  384 ENAFIGSNSSLIAPITIGQGTYVA  407 (442)
Q Consensus       384 ~~~~iG~~~~i~~gv~ig~~~~i~  407 (442)
T Consensus        55 ~~~~Ig~~~~i~~g~vIg~~~~Ig   78 (79)
T cd05787          55 DGAVIGKGCTIPPGSLISFGVVIG   78 (79)
T ss_pred             CCCEECCCCEECCCCEECCCCEEC
T ss_conf             989999999999999997997969