HHsearch alignment for GI: 254780942 and conserved domain: cd06434
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=95.90 E-value=0.055 Score=29.75 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=62.1
Q ss_pred EEEECCE-E-HHHHHHHHHHHCCCCEEEEEECCCH----HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 1258848-5-7999999999779977999957988----99999730269728999859988614466410000123446
Q gi|254780942|r 26 LQKIAGK-P-MISHVMETIAAAGIENVALVLGYGA----EEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYD 99 (442)
Q Consensus 26 Llpi~gk-p-li~~~i~~l~~~g~~~ivvv~~~~~----e~i~~~~~~~~~~i~~v~q~~~~GTa~Ai~~a~~~l~~~~~ 99 (442)
T Consensus 5 iIPayNE~~~il~~~l~s~~~~~~~eiivV~D~s~d~~~~~~~~~~~~--~~~~-v~~~~~~GK~~Aln~~l~~a~~--d 79 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY--GGIF-VITVPHPGKRRALAEGIRHVTT--D 79 (235)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCC--CCEE-EEECCCCCHHHHHHHHHHHCCC--C
T ss_conf 995226976899999999980899989999889997289999986348--9789-9988989989999999997577--8
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 05898515411153322000000135
Q gi|254780942|r 100 DVIIMYGDVPLVSSHTLKKAMDKIAQ 125 (442)
Q Consensus 100 ~~lVl~GD~~li~~~~l~~l~~~~~~ 125 (442)
T Consensus 80 ~v~~~DaD~-~~~~~~l~~l~~~f~d 104 (235)
T cd06434 80 IVVLLDSDT-VWPPNALPEMLKPFED 104 (235)
T ss_pred EEEEECCCC-CCCHHHHHHHHHHHCC
T ss_conf 899985885-3588899999996489