HHsearch alignment for GI: 254780942 and conserved domain: cd06435
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=95.32 E-value=0.12 Score=27.87 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=65.0
Q ss_pred EEEECCEE--HHHHHHHHHHHCCC--CEEEEEECC--CH---HHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHCCCCCC
Q ss_conf 12588485--79999999997799--779999579--88---999997302697289998599886-1446641000012
Q gi|254780942|r 26 LQKIAGKP--MISHVMETIAAAGI--ENVALVLGY--GA---EEITRINFPPTLSVEYYIQDCQQG-TAHAVLTAQDAIK 95 (442)
Q Consensus 26 Llpi~gkp--li~~~i~~l~~~g~--~~ivvv~~~--~~---e~i~~~~~~~~~~i~~v~q~~~~G-Ta~Ai~~a~~~l~ 95 (442)
T Consensus 3 iIPayNE~~~vi~~~l~sl~~~~Yp~~eIiVvdd~stD~t~~~~v~~~~~~~~~~~~~~~~~~~~g~K~~alN~~l~~~~ 82 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTA 82 (236)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 98358992899999999999579999879999892998158999999998729967999948889970999999999647
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 344605898515411153322000000135
Q gi|254780942|r 96 PGYDDVIIMYGDVPLVSSHTLKKAMDKIAQ 125 (442)
Q Consensus 96 ~~~~~~lVl~GD~~li~~~~l~~l~~~~~~ 125 (442)
T Consensus 83 ~~~e~i~~~DaD~-~~~pd~L~~~v~~f~~ 111 (236)
T cd06435 83 PDAEIIAVIDADY-QVEPDWLKRLVPIFDD 111 (236)
T ss_pred CCCEEEEEECCCC-CCCHHHHHHHHHHHCC
T ss_conf 9854999976887-7786899999986049