HHsearch alignment for GI: 254780942 and conserved domain: pfam01128
>pfam01128 IspD Uncharacterized protein family UPF0007.
Probab=99.87 E-value=2.8e-21 Score=139.56 Aligned_cols=216 Identities=14% Similarity=0.212 Sum_probs=148.9
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCH-HHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf 89994588772327888744125884857999999999779-977999957988-9999973026972899985998861
Q gi|254780942|r 6 LAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAG-IENVALVLGYGA-EEITRINFPPTLSVEYYIQDCQQGT 83 (442)
Q Consensus 6 ~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~g-~~~ivvv~~~~~-e~i~~~~~~~~~~i~~v~q~~~~GT 83 (442)
T Consensus 2 ~aIIlAaG~G~R~~~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~~~i~~v~GG~t--R 77 (221)
T pfam01128 2 VAVIPAAGSGKRMGAGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFRQLLG--DPSIQLVAGGDT--R 77 (221)
T ss_pred EEEEECCEECCCCCCCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCC--CCCEEEECCCCC--H
T ss_conf 899935810612695898653668988899999999963888897999967788999998607--998799679963--8
Q ss_pred HHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEC-CCCCEECCCCCCCC
Q ss_conf 44664100001234460589851541115332200000013586100100101221574404202-33310010014667
Q gi|254780942|r 84 AHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIK-NNEIIAIREENDAT 162 (442)
Q Consensus 84 a~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i~Ek~d~~ 162 (442)
T Consensus 78 ~~SV~ngL~~l~~~~~~VlIHDaaRP~v~~~~i~~li~~~~~~~~~~i~~~p~~DTi----k~v~~~~~i~~t~dR~~l~ 153 (221)
T pfam01128 78 QDSVLNGLKALAGTAKFVLVHDGARPCLPHADLARLLAALETGTQGAILALPVTDTI----KRVEADGVVAGTPDRSGLW 153 (221)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCE----EEECCCCCEECCCCCHHHE
T ss_conf 999999999835899989998365667999999999999860048613541246643----5753786044035642101
Q ss_pred CCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCCCCCCCCCC
Q ss_conf 54210003556001112501467775328887400111211489999730771799917214301112100000012222
Q gi|254780942|r 163 DEERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENIWQ 242 (442)
Q Consensus 163 ~~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L~~~~~~~~ 242 (442)
T Consensus 154 --~~QTP------Q~F~~~~L~~a~~~~~~----~~~~~TDd~sl~~~~g~~v~~v~G~~~N-~KIT~~eDl~~ae~lL~ 220 (221)
T pfam01128 154 --AAQTP------QGFRVDLLLAAHQRGDQ----PGAEITDDASLVEHAGGSVQVVPGRPDN-LKITTPEDLALAEAILR 220 (221)
T ss_pred --ECCCC------CCCCHHHHHHHHHHHHH----CCCCCCCHHHHHHHCCCCEEEEECCCCC-CCCCCHHHHHHHHHHHC
T ss_conf --10076------20069999999998886----2999762999999779977999658423-88789999999999967