RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine
pyrophosphorylase protein [Candidatus Liberibacter asiaticus str.
psy62]
(442 letters)
>gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 510 bits (1314), Expect = e-145
Identities = 202/461 (43%), Positives = 292/461 (63%), Gaps = 22/461 (4%)
Query: 3 RKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEIT 62
A++LAAG+G RMKS KVL +AGKPM+ HV++ A G +++ +V+G+GAE++
Sbjct: 1 MSLSAVILAAGKGTRMKSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQV- 59
Query: 63 RINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYD-DVIIMYGDVPLVSSHTLKKAMD 121
R VE+ +Q+ Q GT HAVL A A+ YD DV+++YGDVPL+++ TL++ +
Sbjct: 60 REALAERDDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLA 119
Query: 122 -KIAQGYSIAVVGFNADNPKGYGRLLIKNN-EIIAIREENDATDEERKIHYCNSGLMAID 179
A G + V+ D+P GYGR++ N E+ AI EE DA++EE++I N+G+ A D
Sbjct: 120 AHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTGIYAFD 179
Query: 180 GLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVK-EQEVCGCNNRYELSLIE 238
G ++ L ++ N EYYLTD+I AR +G+ + ++ V E+EV G N+R +L+ E
Sbjct: 180 GAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAE 239
Query: 239 NIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVF------------FGCG- 285
I Q R ++M++GVT+I P T ++ D I D VIEP+V G G
Sbjct: 240 RIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGS 299
Query: 286 ----VSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIK 341
I + I+A+S +EG +G+ +GPFAR+R + +V IGNF EVKKATI
Sbjct: 300 VIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIG 359
Query: 342 EGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIG 401
+GSK HL+Y+GD+ +G+NVNIGAGTITCNYDG +K+KT I +N FIGSNS L+AP+TIG
Sbjct: 360 KGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIG 419
Query: 402 QGTYVASGSIITQDTPENSLVFARSRQIVKEDGALSMRKKK 442
G +A+GS IT+D PE +L +R+RQ KE +KKK
Sbjct: 420 DGATIAAGSTITKDVPEGALAISRARQTNKEGWVRKKKKKK 460
>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate
uridyltransferase (GlmU), C-terminal left-handed
beta-helix (LbH) acetyltransferase domain: GlmU is also
known as UDP-N-acetylglucosamine pyrophosphorylase. It
is a bifunctional bacterial enzyme that catalyzes two
consecutive steps in the formation of
UDP-N-acetylglucosamine (UDP-GlcNAc), an important
precursor in bacterial cell wall formation. The two
enzymatic activities, uridyltransferase and
acetyltransferase, are carried out by two independent
domains. The C-terminal LbH domain possesses the
acetyltransferase activity. It catalyzes the
CoA-dependent acetylation of GlcN-1-phosphate to
GlcNAc-1-phosphate. The LbH domain contains 10 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The
acetyltransferase active site is located at the
interface between two subunits of the active LbH
trimer..
Length = 193
Score = 268 bits (689), Expect = 2e-72
Identities = 91/191 (47%), Positives = 122/191 (63%), Gaps = 5/191 (2%)
Query: 238 ENIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAF 297
E + + GV ++ V L T+I D VI P+ +I + V I+A
Sbjct: 8 ETTYI----DGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKAS 62
Query: 298 SYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVV 357
S +EG IG +GPFA +R T + + V IGNF E+KK+TI EGSK NHLSY+GD+ +
Sbjct: 63 SVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEI 122
Query: 358 GKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTP 417
G+ VNIGAGTITCNYDG +K++T I +N FIGSNS L+AP+TIG G +A+GS IT+D P
Sbjct: 123 GEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVP 182
Query: 418 ENSLVFARSRQ 428
+L AR+RQ
Sbjct: 183 PGALAIARARQ 193
>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU. The
N-terminal domain of N-Acetylglucosamine-1-phosphate
uridyltransferase (GlmU). GlmU is an essential bacterial
enzyme with both an acetyltransferase and an
uridyltransferase activity which have been mapped to the
C-terminal and N-terminal domains, respectively. This
family represents the N-terminal uridyltransferase. GlmU
performs the last two steps in the synthesis of
UDP-N-acetylglucosamine (UDP-GlcNAc), which is an
essential precursor in both the peptidoglycan and the
lipopolysaccharide metabolic pathways in Gram-positive
and Gram-negative bacteria, respectively.
Length = 229
Score = 261 bits (669), Expect = 3e-70
Identities = 91/231 (39%), Positives = 144/231 (62%), Gaps = 5/231 (2%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINF 66
A++LAAG+G RMKS KVL +AGKPM+ HV++ A G + + +V+G+GAE++ +
Sbjct: 1 AVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKAL- 59
Query: 67 PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDK-IAQ 125
+VE+ +Q+ Q GT HAV A A+K DV+++YGDVPL++ TL++ ++
Sbjct: 60 -ANPNVEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREA 118
Query: 126 GYSIAVVGFNADNPKGYGRLLIKNN-EIIAIREENDATDEERKIHYCNSGLMAIDGLYIM 184
G + V+ ++P GYGR++ N +++ I EE DAT+EE+ I N+G+ A D ++
Sbjct: 119 GADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLF 178
Query: 185 DWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVK-EQEVCGCNNRYEL 234
+ L ++ N EYYLTDII A DG +A++ E+EV G N+R +L
Sbjct: 179 EALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229
>gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 123 bits (310), Expect = 9e-29
Identities = 101/415 (24%), Positives = 167/415 (40%), Gaps = 68/415 (16%)
Query: 7 AIVLAAGRGHRMKS---SSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEIT- 62
A++LA G G R++ K L IAGKP+I +V+E +AAAG+E + LV+GY E+I
Sbjct: 4 AVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEE 63
Query: 63 --RINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM 120
+ + Y ++ GTA A+ A D + DD +++ GDV ++ L + +
Sbjct: 64 YFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGG--DDFLVLNGDV--LTDLDLSELL 119
Query: 121 DK-IAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAID 179
+ +G + +P +G + + + + EE + N+
Sbjct: 120 EFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINA------ 173
Query: 180 GLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIEN 239
G+YI D + D IEK E
Sbjct: 174 GIYIFD-------------PEVFDYIEKGE-----------------------RFDFEEE 197
Query: 240 IWQSRYRRQMMISGVTMIAPETVFLSHDTIIQ-PDTVIEPHVFFGCGVSIENYVQIRAFS 298
+ + + + G + + +++ + ++ G E V IR+
Sbjct: 198 LLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAY 257
Query: 299 YLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVG 358
+ V IG IGP A I T I + V IGN E+K + I + I H SY+GDS++G
Sbjct: 258 IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIG 317
Query: 359 KNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIIT 413
+N IGA I + IG NS ++ + +G G+ V SG I
Sbjct: 318 ENCKIGAS-------------LIIGD-VVIGINSEILPGVVVGPGSVVESGEIED 358
>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate
thymidylyltransferase, C-terminal Left-handed parallel
beta-Helix (LbH) domain: Proteins in this family show
simlarity to glucose-1-phosphate adenylyltransferases in
that they contain N-terminal catalytic domains that
resemble a dinucleotide-binding Rossmann fold and
C-terminal LbH fold domains. Members in this family are
predicted to be glucose-1-phosphate
thymidylyltransferases, which are involved in the
dTDP-L-rhamnose biosynthetic pathway.
Glucose-1-phosphate thymidylyltransferase catalyzes the
synthesis of deoxy-thymidine di-phosphate
(dTDP)-L-rhamnose, an important component of the cell
wall of many microorganisms. The C-terminal LbH domain
contains multiple turns, each containing three imperfect
tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity..
Length = 163
Score = 113 bits (285), Expect = 1e-25
Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 276 IEPHVFFGCGVSIENYVQIRAFSYLEG-VHIGKKTIIGPFARIRQETTIEKNVRIGNFCE 334
+E V V I +R+ +Y+EG V IGK IGP A IR T + +GN E
Sbjct: 8 VEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVE 67
Query: 335 VKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNY---DGTHKYKTH---------- 381
VK + I +G+K+ HL+YVGDSV+G+NVN+GAGTIT N D K +
Sbjct: 68 VKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRK 127
Query: 382 ----INENAFIGSNSSLIAPITIGQGTYVASGSIIT 413
I + G N SL + IG G++V G ++
Sbjct: 128 LGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVVR 163
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of
nucleotides onto phosphosugars. Nucleotidyltransferases
transfer nucleotides onto phosphosugars. The enzyme
family includes Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase, Mannose-1-phosphate
guanyltransferase, and Glucose-1-phosphate
thymidylyltransferase. The products are activated sugars
that are precursors for synthesis of lipopolysaccharide,
glycolipids and polysaccharides.
Length = 217
Score = 113 bits (285), Expect = 1e-25
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 28/219 (12%)
Query: 7 AIVLAAGRGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITR 63
A++LAAG+G R++ + K L IAGKP++ +++E +A AGI+ + LV+GY E+I
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEE 60
Query: 64 ---INFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM 120
+++EY +Q+ GTA AV A+D + DD +++ GDV ++ L + +
Sbjct: 61 YFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGD--DDFLVVNGDV--LTDLDLSELL 116
Query: 121 D-KIAQGYSIAVVGFNADNPKGYGRLLI-KNNEIIAIRE--ENDATDEERKIHYCNSGLM 176
+G + ++P YG + + + + E ++ +
Sbjct: 117 RFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPTLPESN------------L 164
Query: 177 AIDGLYIMD-WLLQ-IKKNKVSQEYYLTDIIEKARLDGK 213
A G+YI + +L I + E LTD I +GK
Sbjct: 165 ANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGK 203
>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of
glucose-1-phosphate thymidylyltransferase. This family
is the long form of Glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.There are two forms of Glucose-1-phosphate
thymidylyltransferase in bacteria and archeae; short
form and long form. The long form, which has an extra
50 amino acids c-terminal, is found in many species for
which it serves as a sugar-activating enzyme for
antibiotic biosynthesis and or other, unknown pathways,
and in which dTDP-L-rhamnose is not necessarily
produced.The long from enzymes also have a left-handed
parallel helix domain at the c-terminus, whereas, th
eshort form enzymes do not have this domain. The
homotetrameric, feedback inhibited short form is found
in numerous bacterial species that produce
dTDP-L-rhamnose.
Length = 236
Score = 85.3 bits (212), Expect = 3e-17
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 19/166 (11%)
Query: 1 MKRKRLAIVLAAGRGHRMKS---SSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYG 57
MK ++LA G+G R++ + K L +AGKP+I + +E + AGIE++ +V+G
Sbjct: 1 MK----GLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPT 56
Query: 58 AEEITRI-----NFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMY-GDVPLV 111
EEI F + + Y +Q+ G AHAVL A+D + D+ ++Y GD L+
Sbjct: 57 GEEIKEALGDGSRFG--VRITYILQEEPLGLAHAVLAARDFLG---DEPFVVYLGD-NLI 110
Query: 112 SSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIRE 157
D + + +++ ++P+ +G ++ + I+ + E
Sbjct: 111 QEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDDGRIVRLVE 156
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 186
Score = 84.5 bits (210), Expect = 5e-17
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINF 66
AI+LAAGR RM + K+L + GKP++ H ++ AAG+ V +VLG A+ +
Sbjct: 3 AIILAAGRSSRMGGN--KLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAAL- 59
Query: 67 PPTLSVEYYI-QDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDK-IA 124
L V I D ++G + ++ +A+ D V+I+ D PLV++ TL+ +D
Sbjct: 60 -AGLPVVVVINPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFRE 118
Query: 125 QGYSIAVVGFN 135
G I +
Sbjct: 119 DGAGIVAPVYQ 129
>gnl|CDD|31402 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 286
Score = 83.3 bits (206), Expect = 1e-16
Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 7 AIVLAAGRGHRMK---SSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGY-GAEEIT 62
++LA G G R++ K L + KPMI + +ET+ AGI ++ +V+G
Sbjct: 3 GVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFK 62
Query: 63 RI-----NFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLK 117
+ +F ++ Y +Q G AHAVL A+D + G DD ++ GD + +
Sbjct: 63 ELLGDGSDFGVDIT--YAVQPEPDGLAHAVLIAEDFV--GDDDFVLYLGD-NIFQDGLSE 117
Query: 118 KAMDKIAQGYSIAVVGFNADNPKGYGRLLIK-NNEIIAIREENDATDEERKIHYCNSGLM 176
+G ++ + D+P YG + + ++I + E+ +E K +
Sbjct: 118 LLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEK----PKEPKSNL------ 167
Query: 177 AIDGLYIMDWLL--QIKKNKVSQ--EYYLTDIIEKARLDGKSIASI 218
A+ GLY D + IK+ K S E +TD I+ G + +I
Sbjct: 168 AVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAI 213
>gnl|CDD|32251 COG2068, COG2068, Uncharacterized MobA-related protein [General
function prediction only].
Length = 199
Score = 76.5 bits (188), Expect = 1e-14
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINF 66
A+VLAAGR RM K+L + GKP++ ET +AG++ V +V G+ E
Sbjct: 8 AVVLAAGRSSRM--GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALL 65
Query: 67 PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKK 118
D QG + ++ A D V++M GD+P V+ T+++
Sbjct: 66 AQLGVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRR 117
>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel
beta-Helix (LbH) N-terminal domain: This group is
composed of Xanthomonas campestris WcxM and proteins
with similarity to the WcxM N-terminal domain. WcxM is
thought to be bifunctional, catalyzing both the
isomerization and transacetylation reactions of
keto-hexoses. It contains an N-terminal LbH domain
responsible for the transacetylation function and a
C-terminal isomerase domain. The LbH domain contains
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with
acyltransferase activity..
Length = 119
Score = 73.7 bits (182), Expect = 1e-13
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 26/127 (20%)
Query: 305 IGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGD-SVVGKNVNI 363
IG IIG IE +V+IG+ KI + + + +V I
Sbjct: 1 IGDNCIIGTNV------FIENDVKIGDNV-----------KIQSNVSIYEGVTIEDDVFI 43
Query: 364 GAGTITCN--------YDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQD 415
G + N Y T + A IG+N++++ +TIG+ V +G+++T+D
Sbjct: 44 GPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKD 103
Query: 416 TPENSLV 422
P +LV
Sbjct: 104 VPPYALV 110
>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT),
Left-handed parallel beta-Helix (LbH) domain; This group
is composed of mostly uncharacterized proteins
containing an N-terminal helical subdomain followed by a
LbH domain. The alignment contains 6 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity. A few members
are identified as NeuD, a sialic acid (Sia)
O-acetyltransferase that is required for Sia synthesis
and surface polysaccharide sialylation..
Length = 197
Score = 72.9 bits (180), Expect = 2e-13
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVG-DSVVGKNV 361
IG+ +I A I + RIG+ IN + +G D V+G V
Sbjct: 97 AVIGEGCVIMAGA------VINPDARIGDNV-----------IINTGAVIGHDCVIGDFV 139
Query: 362 NIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSL 421
+I G + I E AFIG+ +++I +TIG G + +G+++T+D P+ S+
Sbjct: 140 HIAPGVVLSGG-------VTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSV 192
Query: 422 VF 423
V
Sbjct: 193 VV 194
Score = 46.3 bits (111), Expect = 2e-05
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 260 ETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLE-------GVHIGKKTIIG 312
E + +I PD I +V G I + I F ++ GV IG+ IG
Sbjct: 101 EGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIG 160
Query: 313 PFARIRQETTIEKNVRIG 330
A I Q TI IG
Sbjct: 161 AGATIIQGVTIGAGAIIG 178
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
cytidylyltransferases catalyze the synthesis of
CDP-choline. This family contains proteins similar to
prokaryotic phosphocholine (P-cho)
cytidylyltransferases. Phosphocholine (PC)
cytidylyltransferases catalyze the transfer of a
cytidine monophosphate from CTP to phosphocholine to
form CDP-choline. PC is the most abundant phospholipid
in eukaryotic membranes and it is also important in
prokaryotic membranes. For pathogenic prokaryotes, the
cell surface PC facilitates the interaction with host
surface and induces attachment and invasion. In addition
cell wall PC serves as scaffold for a group of
choline-binding proteins that are secreted from the
cells. Phosphocholine (PC) cytidylyltransferase is a key
enzyme in the prokaryotic choline metabolism pathway. It
has been hypothesized to consist of a choline transport
system, a choline kinase, CTP:phosphocholine
cytidylyltransferase, and a choline phosphotransferase
that transfers P-Cho from CDP-Cho to either lipoteichoic
acid or lipopolysaccharide.
Length = 229
Score = 70.0 bits (172), Expect = 1e-12
Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 7 AIVLAAGRGHRMKSSSS---KVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITR 63
AI+LAAGRG R++ + K L +I GKP++ +ET+ AGI+++ +V GY E+I
Sbjct: 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEE 60
Query: 64 INFPPTLSVEYYIQD--CQQGTAHAVLTAQDAIKPGYDDVIIMYGDV 108
+ ++++ + +++ A+D + +D +++ GDV
Sbjct: 61 L-LKKYPNIKFVYNPDYAETNNIYSLYLARDFLD---EDFLLLEGDV 103
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 65.7 bits (161), Expect = 2e-11
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 39/223 (17%)
Query: 7 AIVLAAGRGHRMKSSSS---KVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITR 63
A++LA G G R++S K L +AG+P + +++E +A GI + L +GY AE+I
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEE 60
Query: 64 I---NFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDV-------PLVSS 113
+ + + Y I+ GT A+ A + D +++ GD L+++
Sbjct: 61 YFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPE--DQFLVLNGDTYFDVDLLALLAA 118
Query: 114 HTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLI-KNNEIIAIREENDATDEERKIHYCN 172
A + + YG + + + +IA E+ I+
Sbjct: 119 LRASGAD--------ATMALRRVPDASRYGNVTVDGDGRVIAFVEK-GPGAAPGLING-- 167
Query: 173 SGLMAIDGLYIM--DWLLQIKKNKVSQEYYLTDIIEKARLDGK 213
G+Y++ + L +I + S E D++ G+
Sbjct: 168 -------GVYLLRKEILAEIPADAFSLE---ADVLPALVKRGR 200
>gnl|CDD|31246 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl].
Length = 338
Score = 62.2 bits (151), Expect = 3e-10
Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 13/163 (7%)
Query: 261 TVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL-EGVHIGKKTIIGPFARIRQ 319
T + I + I P+V G GV I V I A + + E V IG T+I P I
Sbjct: 105 TAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYH 164
Query: 320 ETTIEKNVRIGNFCEVKKAT-IKEGSKINH--LSYVGDSVVGKNVNIGAGTITCN---YD 373
I NV I + + G+ I + +G ++G +V IGA T D
Sbjct: 165 NVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDD 224
Query: 374 GTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDT 416
I+ IG N + IG+ +A I
Sbjct: 225 TVIGEGVKIDNLVQIGHN------VRIGEHCIIAGQVGIAGSV 261
Score = 59.1 bits (143), Expect = 3e-09
Identities = 46/205 (22%), Positives = 67/205 (32%), Gaps = 37/205 (18%)
Query: 259 PETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL-------EGVHIGKKTII 311
+ V + + +I VI +V G G I V+I + + V IG II
Sbjct: 115 GKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVII 174
Query: 312 GPFARIRQE-------------TTIEKNVRIGNFCEVKKAT-----------IKEGSKIN 347
A I + V IG+ E+ T I EG KI+
Sbjct: 175 HSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKID 234
Query: 348 HLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVA 407
+L +G NV IG I G I + IG + + IG G +
Sbjct: 235 NLVQIG-----HNVRIGEHCIIAGQVGIAG-SVKIGKYVIIGGQVGIAGHLEIGDGVTIG 288
Query: 408 SGSIITQDTPENSLVFARSRQIVKE 432
+ S + E Q +KE
Sbjct: 289 ARSGVMASITEPGYSGGIPAQPIKE 313
Score = 39.5 bits (92), Expect = 0.002
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVN 362
I +I P A I + +I NV IG I E I +V+G+NV
Sbjct: 100 AGIHPTAVIDPTATIGKNVSIGPNVVIG-----AGVVIGENVVIG-----AGAVIGENVK 149
Query: 363 IGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSII 412
IG GT+ H I N IG+N + + IG + +G+ I
Sbjct: 150 IGDGTV------IHP-NVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAI 192
>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase
(LpxD): The enzyme catalyzes the transfer of
3-hydroxymyristic acid or 3-hydroxy-arachidic acid,
depending on the organism, from the acyl carrier protein
(ACP) to UDP-3-O-acyl-glucosamine to produce
UDP-2,3-diacyl-GlcNAc. This constitutes the third step
in the lipid A biosynthetic pathway in Gram-negative
bacteria. LpxD is a homotrimer, with each subunit
consisting of a novel combination of an N-terminal
uridine-binding domain, a core lipid-binding left-handed
parallel beta helix (LbH) domain, and a C-terminal
alpha-helical extension. The LbH domain contains 9
turns, each containing three imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)..
Length = 205
Score = 60.1 bits (147), Expect = 1e-09
Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 34/184 (18%)
Query: 257 IAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRA--------FSY--LEGVHIG 306
I P V + +I D VI P+V G I + V I + F + G +
Sbjct: 28 IGP-GVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWV- 85
Query: 307 KKTIIGPFARIRQ--ETTIEKNVRIGNFCEVKKAT-----IKEGSKINHLSYVGDSVVGK 359
+I Q I +V IG + + I +G+KI++L +
Sbjct: 86 ---------KIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQ-----IAH 131
Query: 360 NVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPEN 419
NV IG + G T I +N IG + +TIG G + +GS +T P
Sbjct: 132 NVRIGENCLIAAQVGIAGS-TTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPG 190
Query: 420 SLVF 423
V
Sbjct: 191 EYVS 194
>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This
family is composed of maltose O-acetyltransferase,
galactoside O-acetyltransferase (GAT), xenobiotic
acyltransferase (XAT) and similar proteins. MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively while GAT
specifically acetylates galactopyranosides. XAT
catalyzes the CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. XATs are implicated in
inactivating xenobiotics leading to xenobiotic
resistance in patients. Members of this family contain a
a left-handed parallel beta-helix (LbH) domain with at
least 5 turns, each containing three imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their
active form..
Length = 109
Score = 60.2 bits (147), Expect = 1e-09
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 26/113 (23%)
Query: 322 TIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGT--ITCNYD------ 373
+I NV IG C I G I +G NV IG N+D
Sbjct: 3 SIGDNVYIGPGC-----VISAGGGI---------TIGDNVLIGPNVTIYDHNHDIDDPER 48
Query: 374 ----GTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV 422
G I ++ +IG+N ++ +TIG G V +GS++T+D P NS+V
Sbjct: 49 PIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIV 101
Score = 34.4 bits (80), Expect = 0.075
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 23/70 (32%)
Query: 255 TMIAPETVFLSHDTIIQP------------DTVIEPHVFFGCGVSIENYVQIRAFSYLEG 302
+I P H+ I VI V+ G V I L G
Sbjct: 28 VLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVI-----------LPG 76
Query: 303 VHIGKKTIIG 312
V IG ++G
Sbjct: 77 VTIGDGAVVG 86
>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity, however, some subfamilies in
this hierarchy also show activities related to ion
transport or translation initiation. Many are trimeric
in their active forms..
Length = 78
Score = 59.6 bits (145), Expect = 2e-09
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 338 ATIKEGSKINHLSYVGDSV-VGKNVNIGAGTITCNYDG-THKYKTHINENAFIGSNSSLI 395
I EG KI+ + + V +G NVNIG G + G K T I +N IG+N+ +
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60
Query: 396 APITIGQGTYVASGSIIT 413
+ IG + +G+++T
Sbjct: 61 GGVKIGDNAVIGAGAVVT 78
Score = 38.8 bits (91), Expect = 0.003
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 262 VFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLE---GVHIGKKTIIGPFARIR 318
VF+ I P VI V G V+I I A + IG IG A I
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60
Query: 319 QETTIEKNVRIGN 331
I N IG
Sbjct: 61 GGVKIGDNAVIGA 73
>gnl|CDD|32354 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino
acid transport and metabolism].
Length = 271
Score = 58.8 bits (142), Expect = 3e-09
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 311 IGPFARIRQETTIEKNVRI--GNFCEVKKATIKEGSKINHLSYVGDSV-VGKNVNIGAG- 366
I P A +R I K + +F + A EG+ ++ + VG VGKN +IG G
Sbjct: 111 IVPGAIVRLGAYIAKGTVVMPESFVNIG-AGTGEGTMVDGRASVGSCAQVGKNSHIGGGA 169
Query: 367 TITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLVFARS 426
+I + I +N IG+NS ++ + +G G VA+G ITQDT V R
Sbjct: 170 SIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYDRVAGRV 229
Query: 427 RQIVKEDGALS 437
V G L
Sbjct: 230 AGSVVVAGTLP 240
>gnl|CDD|31403 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 57.1 bits (138), Expect = 9e-09
Identities = 64/252 (25%), Positives = 97/252 (38%), Gaps = 60/252 (23%)
Query: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQK----IAGKPMISHVMETIAAAGIENVALVLGY 56
M + R A++ AAG G R ++K + K I KP+I +++E AAGIE + +V G
Sbjct: 1 MMKIRKAVIPAAGLGTRF-LPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGR 59
Query: 57 G--------------------------AEEITRINFPPTLSVEYYIQDCQQGTAHAVLTA 90
G EE+ I PP +++ + Q G HAVL A
Sbjct: 60 GKRAIEDHFDTSYELENTLEKRGKRELLEEVRSI--PPLVTISFVRQKEPLGLGHAVLCA 117
Query: 91 QDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQGY---SIAVVGFNADNPKGYGRLLI 147
+ + G + ++ D + S K M ++ + I V ++ YG
Sbjct: 118 KPFV--GDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKYG---- 171
Query: 148 KNNEIIAIREENDATD-------EERKIHYCNSGLMAIDGLY-----IMDWLLQIKKNKV 195
+I E + E+ K S L AI G Y I D L + K
Sbjct: 172 ----VIDPGEPVEKGVYKVKGMVEKPKPEEAPSNL-AIVGRYVLTPEIFDILEETKPGA- 225
Query: 196 SQEYYLTDIIEK 207
E LTD I+K
Sbjct: 226 GGEIQLTDAIKK 237
>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl
group of L-serine to form O-acetylserine, as the first
step of a two-step biosynthetic pathway in bacteria and
plants leading to the formation of L-cysteine. This
reaction represents a key metabolic point of regulation
for the cysteine biosynthetic pathway due to its
feedback inhibition by cysteine. The enzyme is a 175 kDa
homohexamer, composed of a dimer of homotrimers. Each
subunit contains an N-terminal alpha helical region and
a C-terminal left-handed beta-helix (LbH) subdomain with
5 turns, each containing a hexapeptide repeat motif
characteristic of the acyltransferase superfamily of
enzymes. The trimer interface mainly involves the
C-terminal LbH subdomain while the dimer (of trimers)
interface is mediated by the N-terminal alpha helical
subdomain..
Length = 101
Score = 57.1 bits (139), Expect = 1e-08
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 338 ATIKEGSKINHLSYV---GDSVVGKNVNIGAG-TITCNYDGTHKYKTHINENAFIGSNSS 393
A I G I+H + + +V+G N I G T+ G K I +N IG+ +
Sbjct: 9 AKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAK 68
Query: 394 LIAPITIGQGTYVASGSIITQDTPENSLVF 423
++ ITIG + + +++T+D P NS V
Sbjct: 69 ILGNITIGDNVKIGANAVVTKDVPANSTVV 98
Score = 29.3 bits (67), Expect = 2.1
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 262 VFLSH--DTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQ 319
+F+ H +I VI + GV++ IG +IG A+I
Sbjct: 15 LFIDHGTGIVIGETAVIGDNCTIYQGVTLGG---KGKGGGKRHPTIGDNVVIGAGAKILG 71
Query: 320 ETTIEKNVRIG 330
TI NV+IG
Sbjct: 72 NITIGDNVKIG 82
>gnl|CDD|144176 pfam00483, NTP_transferase, Nucleotidyl transferase. This family
includes a wide range of enzymes which transfer
nucleotides onto phosphosugars.
Length = 247
Score = 55.7 bits (135), Expect = 2e-08
Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 41/232 (17%)
Query: 6 LAIVLAAGRGHRM----KSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYG---- 57
AI+LA G G R+ ++ + ++ + PMI + + + AGI ++
Sbjct: 1 KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60
Query: 58 -AEEITRIN-FPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVI------IMYGDVP 109
AE++ + F L V Y +Q +GTA AV A D + +++ +Y
Sbjct: 61 VAEQLGDGSKFG--LQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDF 118
Query: 110 LVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIK---NNEIIAIREENDATDEER 166
++KA K A ++ ++P GYG +I+ N +I E+ D +
Sbjct: 119 ---EEAVQKARAK-AADGTVTFGIVPVEDPTGYG--VIEFDENGRVIRFVEK---PDLPK 169
Query: 167 KIHYCNSGLMAIDGLYIMDW---LLQIKKNKVSQEYYL--TDIIEKARLDGK 213
+Y A G+Y + L K K TD I A DG
Sbjct: 170 ASNY------ASMGIYFFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGD 215
>gnl|CDD|100059 cd05635, LbH_unknown, Uncharacterized proteins, Left-handed
parallel beta-Helix (LbH) domain: Members in this group
are uncharacterized bacterial proteins containing a LbH
domain with multiple turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity..
Length = 101
Score = 54.6 bits (132), Expect = 6e-08
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 286 VSIENYVQIRAFSYLEG-VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGS 344
+ I I F+ +EG V+IG + + ARI TTI +IG EV+ + I+ S
Sbjct: 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYS 69
Query: 345 KINHLSYVGDSVVGKNVNIGAGTITCN 371
H ++G S +G N+GAGT +
Sbjct: 70 NKQHDGFLGHSYLGSWCNLGAGTNNSD 96
>gnl|CDD|39947 KOG4750, KOG4750, KOG4750, Serine O-acetyltransferase [Amino acid
transport and metabolism].
Length = 269
Score = 54.3 bits (130), Expect = 7e-08
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 296 AFSYLEGVHIGKKTIIGPFARI--------RQETTIEKNVRIGNFCEVK---KATIKEGS 344
Y + GK + RI R+ + VRI V A I +G
Sbjct: 102 CIDYGSNILHGKGFLANQAYRIAHNLWTQDRKILALGLQVRISPNFGVDIHPAAKIGKGI 161
Query: 345 KINHLSYV---GDSVVGKNVNIGAG-TITCNYDGTHKYKTHINENAFIGSNSSLIAPITI 400
++H + V +VVG NV+I T+ G+ I +N IG+ +++ +TI
Sbjct: 162 LLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTI 221
Query: 401 GQGTYVASGSIITQDTPENSLVFARS----RQIVKEDGALSMRKK 441
G+G +A+GS++ +D P N+L +I ++D L+M
Sbjct: 222 GEGAVIAAGSVVLKDVPPNTLAVGNPAKLIGKIDEKDPGLTMDHT 266
>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the
synthesis of UDP-glucose. Prokaryotic UDP-Glucose
Pyrophosphorylase (UGPase) catalyzes a reversible
production of UDP-Glucose and pyrophosphate (PPi) from
glucose-1-phosphate and UTP. UDP-glucose plays pivotal
roles in galactose utilization, in glycogen synthesis,
and in the synthesis of the carbohydrate moieties of
glycolipids , glycoproteins , and proteoglycans. UGPase
is found in both prokaryotes and eukaryotes, although
prokaryotic and eukaryotic forms of UGPase catalyze the
same reaction, they share low sequence similarity.
Length = 267
Score = 54.1 bits (131), Expect = 8e-08
Identities = 61/253 (24%), Positives = 92/253 (36%), Gaps = 57/253 (22%)
Query: 7 AIVLAAGRGHRM---KSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYG------ 57
A++ AAG G R + K + I KP+I +++E AAGIE++ +V G G
Sbjct: 3 AVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIED 62
Query: 58 --------------------AEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPG 97
EE+ I ++ Y Q G HAVL A+ I G
Sbjct: 63 HFDRSYELEETLEKKGKTDLLEEVRII--SDLANIHYVRQKEPLGLGHAVLCAKPFI--G 118
Query: 98 YDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGF---NADNPKGYGRLLIKNNEIIA 154
+ ++ GD + S K + + + +V+ ++ YG I+
Sbjct: 119 DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPEDVSKYG--------IVK 170
Query: 155 IREENDATD------EERKIHYCNSGLMAIDGLY-----IMDWLLQIKKNKVSQEYYLTD 203
+ + E+ K S L AI G Y I D L K K E LTD
Sbjct: 171 GEKIDGDVFKVKGLVEKPKPEEAPSNL-AIVGRYVLTPDIFDILENTKPGK-GGEIQLTD 228
Query: 204 IIEKARLDGKSIA 216
I K + A
Sbjct: 229 AIAKLLEEEPVYA 241
>gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose
pyrophosphorylase/mannose-1-phosphate
guanylyltransferase [Cell wall/membrane/envelope
biogenesis].
Length = 371
Score = 53.7 bits (129), Expect = 9e-08
Identities = 85/424 (20%), Positives = 143/424 (33%), Gaps = 90/424 (21%)
Query: 7 AIVLAAGRGHRMK---SSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITR 63
AI+L G G R++ + K L KPMI H +E + +GI + L Y +E + R
Sbjct: 12 AIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNR 71
Query: 64 INFPPTLSVEYYI------QDCQQGTAHAVLTAQDAIKPGYD-DVIIMYGDVPLVSSHTL 116
+ E + + GTA + A+D + D ++ DV +
Sbjct: 72 -HLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDV--ICRMPY 128
Query: 117 KK-AMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDE--ERKIHYCNS 173
K+ A G I +V D P YG ++ I E+ E+ +
Sbjct: 129 KEMVQFHRAHGAEITIVVTKVDEPSKYG--------VVVIDEDTGRVIRFVEKPKDLVS- 179
Query: 174 GLMAID-GLYIM--DWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNN 230
I+ G+YI+ + L +I T I K I +E ++
Sbjct: 180 --NKINAGIYILNPEVLDRI-------LLRPTSI-------EKEIFPAMAEEHQLYA--- 220
Query: 231 RYELSLIENIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIEN 290
+ W + + ++G + +L ++ G +
Sbjct: 221 ----FDLPGFWMDIGQPKDFLTGFSF------YLRSLPKYTSPRLLPGSKIVGNVLVDS- 269
Query: 291 YVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLS 350
S E IG +IGP VRI + ++ +TI S
Sbjct: 270 -----IASIGENCSIGPNVVIGP------------RVRIEDGVRLQDSTILGADYYETHS 312
Query: 351 YVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITI--GQGTYVAS 408
+ S+VG NV IG I++NA +G N + + G G + S
Sbjct: 313 EISSSIVGWNVPIGIWAR-------------IDKNAVLGKNVIVADEDYVNEGSGLPIKS 359
Query: 409 GSII 412
G +
Sbjct: 360 GITV 363
>gnl|CDD|31247 COG1045, CysE, Serine acetyltransferase [Amino acid transport and
metabolism].
Length = 194
Score = 53.0 bits (127), Expect = 2e-07
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 338 ATIKEGSKINHLSYV---GDSVVGKNVNIGAGTITCNYDGTHKYKTH--INENAFIGSNS 392
A I G I+H + V +V+G +V I G T G K H I +IG+ +
Sbjct: 74 AKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGV-TLGGTGKESGKRHPTIGNGVYIGAGA 132
Query: 393 SLIAPITIGQGTYVASGSIITQDTPENSLVFARSRQIVKEDGA 435
++ I IG + +GS++ +D P N+ V +++ G+
Sbjct: 133 KILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIGRPGS 175
Score = 29.9 bits (67), Expect = 1.6
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 17/85 (20%)
Query: 270 IQPDTVIEPHVFFGCG--------VSIENYVQIRAFSYLEG---------VHIGKKTIIG 312
I P I +F G I + V I L G IG IG
Sbjct: 70 IHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIG 129
Query: 313 PFARIRQETTIEKNVRIGNFCEVKK 337
A+I I N +IG V K
Sbjct: 130 AGAKILGNIEIGDNAKIGAGSVVLK 154
>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production.
4-diphosphocytidyl-2-methyl-D-erythritol synthase
(CDP-ME), also called 2C-methyl-d-erythritol
4-phosphate cytidylyltransferase catalyzes the third
step in the alternative (non-mevalonate) pathway of
Isopentenyl diphosphate (IPP) biosynthesis: the
formation of 4-diphosphocytidyl-2C-methyl-D-erythritol
from CTP and 2C-methyl-D-erythritol 4-phosphate. This
mevalonate independent pathway that utilizes pyruvate
and glyceraldehydes 3-phosphate as starting materials
for production of IPP occurs in a variety of bacteria,
archaea and plant cells, but is absent in mammals.
Thus, CDP-ME synthetase is an attractive targets for
the structure-based design of selective antibacterial,
herbicidal and antimalarial drugs.
Length = 218
Score = 52.1 bits (126), Expect = 3e-07
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAG-IENVALVL 54
AI+LAAG G RM + K ++ GKP++ H +E A I+ + +V+
Sbjct: 3 AIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVV 51
>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of
M1P_guanylyl_A_ like proteins are likely to be a isoform
of GDP-mannose pyrophosphorylase. N-terminal domain of
the M1P-guanylyltransferase A-isoform like proteins:
The proteins of this family are likely to be a isoform
of GDP-mannose pyrophosphorylase. Their sequences are
highly conserved with mannose-1-phosphate
guanyltransferase, but generally about 40-60 bases
longer. GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH fold domain.
GDP-d-mannose is the activated form of mannose for
formation of cell wall lipoarabinomannan and various
mannose-containing glycolipids and polysaccharides. The
function of GDP-mannose pyrophosphorylase is essential
for cell wall integrity, morphogenesis and viability.
Repression of GDP-mannose pyrophosphorylase in yeast
leads to phenotypes including cell lysis, defective cell
wall, and failure of polarized growth and cell
separation.
Length = 257
Score = 51.9 bits (125), Expect = 3e-07
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 7 AIVLAAG--RGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVA--LVLGYGAE 59
A++L G +G R + S K L +AGKPMI H +E A A + ++ L++G+ E
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIE--ACAKVPDLKEVLLIGFYPE 58
Query: 60 E-----ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAI-KPGYDDVIIMYGDV 108
I+ + + Y + GTA + +D I ++ DV
Sbjct: 59 SVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADV 113
>gnl|CDD|30459 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily)
[General function prediction only].
Length = 190
Score = 50.7 bits (120), Expect = 8e-07
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 9/146 (6%)
Query: 281 FFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFC---EVKK 337
G V + Y +I L G+ IG+ +I P RI EKN+ IG+ C
Sbjct: 27 VAGKPVKLGRYAEILGR--LVGIKIGEVAVIRPPVRID---LGEKNLTIGDLCFIGVNVV 81
Query: 338 ATIKEGSKINHLSYVGDSV-VGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIA 396
+ EG I VG +V + N + G I E+ +IG+ + ++
Sbjct: 82 ILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILP 141
Query: 397 PITIGQGTYVASGSIITQDTPENSLV 422
+TIG+G + +GS++T+D P +V
Sbjct: 142 GVTIGEGAVIGAGSVVTKDVPPYGIV 167
>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 220
Score = 50.6 bits (122), Expect = 9e-07
Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 63/237 (26%)
Query: 7 AIVLAAGRGHRMK---SSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITR 63
+++A G+G R++ ++ K + K+ GKP++ +++ A G N + + Y AE I
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMI-- 58
Query: 64 INFPPTLSVEYYIQDCQQ--------------GTAHAVLTAQDAIKPGYDDVIIMYGDV- 108
E Y D + GTA A+ + D ++M GD+
Sbjct: 59 ---------EDYFGDGSKFGVNISYVREDKPLGTAGALSLLPEKPT---DPFLVMNGDIL 106
Query: 109 ------PLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDAT 162
L+ H A ++ V + P YG + + I +I E+ +
Sbjct: 107 TNLNYEHLLDFHKENNAD------ATVCVREYEVQVP--YGVVETEGGRITSIEEKPTHS 158
Query: 163 DEERKIHYCNSGLMAIDGLYIM--DWLLQIKKNKVSQEYYLTDIIEKARLDGKSIAS 217
N+ G+Y++ + L I KN + + + D+IEK +GK +
Sbjct: 159 ------FLVNA------GIYVLEPEVLDLIPKN---EFFDMPDLIEKLIKEGKKVGV 200
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a
member of the nucleotidyl transferase family. This is
a subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 49.9 bits (120), Expect = 1e-06
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 7 AIVLAAGRGHRMKS---SSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEI 61
A++LAAG G RM+ + K L +AGKP+I H ++ +AAAGI + + + A++I
Sbjct: 2 AMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQI 59
>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin
guanine dinucleotide. The prokaryotic enzyme
molybdopterin-guanine dinucleotide biosynthesis protein
A (MobA). All mononuclear molybdoenzymes bind molybdenum
in complex with an organic cofactor termed molybdopterin
(MPT). In many bacteria, including Escherichia coli,
molybdopterin can be further modified by attachment of a
GMP group to the terminal phosphate of molybdopterin to
form molybdopterin guanine dinucleotide (MGD). This GMP
attachment step is catalyzed by MobA, by linking a
guanosine 5'-phosphate to MPT forming molybdopterin
guanine dinucleotide. This reaction requires GTP, MgCl2,
and the MPT form of the cofactor. It is a reaction
unique to prokaryotes, and therefore may represent a
potential drug target.
Length = 181
Score = 49.1 bits (118), Expect = 2e-06
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 14/128 (10%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINF 66
++LA G+ RM K L ++ GKP++ HV+E + ++ V + E +
Sbjct: 3 GVILAGGKSRRM--GGDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQERYALLGV 59
Query: 67 PPTLSVEYYIQDCQ--QGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIA 124
P I D +G +L A A D V+++ D+P + L++ +
Sbjct: 60 P-------VIPDEPPGKGPLAGILAALRAAP--ADWVLVLACDMPFLPPELLERLLAAAE 110
Query: 125 QGYSIAVV 132
+G V
Sbjct: 111 EGADAVVP 118
>gnl|CDD|31404 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase
[Lipid metabolism].
Length = 230
Score = 49.1 bits (117), Expect = 2e-06
Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMET-IAAAGIENVALVLGYGAE 59
M+ A++LAAG G RM + K ++ G+P++ H +E + + I+ + +V+ E
Sbjct: 1 MRMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVV--SPE 58
Query: 60 EITRINFPPTLSVEYYIQDCQQGT--AHAVLTAQDAIKPGYDDVIIMYGDV-PLVSSHTL 116
+ P LS + ++ + G +V A+ D ++++ P ++ +
Sbjct: 59 DDPYFEKLPKLSADKRVEVVKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLI 118
Query: 117 KKAMDKIAQGYSIAVVGFNADNPK 140
K+ ++ + + + D K
Sbjct: 119 KRLIELADKYGAAILALPVTDTLK 142
>gnl|CDD|31007 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine
patch superfamily [General function prediction only].
Length = 176
Score = 49.0 bits (117), Expect = 2e-06
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVN 362
V IG I P A +R + + +RIG I++G I H +G +V
Sbjct: 30 VRIGAGVSIWPGAVLRGD---VEPIRIGART-----NIQDGVVI-HADPGYPVTIGDDVT 80
Query: 363 IGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDT--PENS 420
IG G + + I +N IG ++++ IG G+ V +G+++T P S
Sbjct: 81 IGHGAVV--------HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGS 132
Query: 421 LVF---ARSRQIVKEDGALSMRK 440
LV A+ + + ++ +R+
Sbjct: 133 LVVGSPAKVVRPLDDEELAWLRE 155
Score = 40.2 bits (94), Expect = 0.001
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 26/170 (15%)
Query: 248 QMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGK 307
MMI ++P+ + + P + V G GVSI +R
Sbjct: 1 MMMIYSYEGLSPK---IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRG----------- 46
Query: 308 KTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGT 367
+ P RI T I+ V I TI + I H + V +G NV IG G
Sbjct: 47 --DVEPI-RIGARTNIQDGVVIHADPGY-PVTIGDDVTIGHGAVVHGCTIGDNVLIGMGA 102
Query: 368 ITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTP 417
+ I + + +G+ +L+ P G + GS P
Sbjct: 103 TVLDG-------AVIGDGSIVGAG-ALVTPGKEIPGGSLVVGSPAKVVRP 144
>gnl|CDD|36674 KOG1461, KOG1461, KOG1461, Translation initiation factor 2B,
epsilon subunit (eIF-2Bepsilon/GCD6) [Translation,
ribosomal structure and biogenesis].
Length = 673
Score = 49.2 bits (117), Expect = 3e-06
Identities = 81/442 (18%), Positives = 148/442 (33%), Gaps = 86/442 (19%)
Query: 1 MKRKRL-AIVLAAGRGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVALVLGY 56
+ RL AI+LA R + + +VL +A PMI + +E + AG+E V +
Sbjct: 20 FREHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSA 79
Query: 57 GAEEI------TRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGY------DDVIIM 104
A +I + P + V + + DA++ D I++
Sbjct: 80 HAAQIIEYIEKSEWYLPMSFIVVTIC-------SGESRSVGDAMRDIDEKQLITGDFILV 132
Query: 105 YGDV-------PLVSSHTLKKAMDKIA------------QGYSIAVVGFN---------- 135
GD ++ H ++ DK A + V+ +
Sbjct: 133 SGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDSRTSRLLHYQ 192
Query: 136 -ADNPKGYGRL---LIKNNEIIAIREENDATDEERKIHYCNSGLMAIDGLYIMDWLLQIK 191
K +L L +N+ + +R ND D +I C+ + L+ ++ Q +
Sbjct: 193 KCVREKHDIQLDLSLFDSNDEVEVR--NDLLDC--QIDICSP---EVLSLFTDNFDYQTR 245
Query: 192 KNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYEL-----SLIENIWQSRYR 246
+ V + + DI+ G I + + I W
Sbjct: 246 DDFV-RGVLVDDIL------GYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLV 298
Query: 247 RQMMISGVTMIA--PETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVH 304
+ SG + ++ S D ++ ++ +V G G I + +I
Sbjct: 299 PDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCR 358
Query: 305 IGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGD-SVVGKNVNI 363
IG I + + I NV IG+ C + A I + KI + + SV+G V +
Sbjct: 359 IGSNVRI-------KNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVV 411
Query: 364 GAG-TITCNYDGTHKYKTHINE 384
G + N +E
Sbjct: 412 GRNFVLPKNSKVRQPTTEESDE 433
>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like
is predicted to have glycosyltransferase activity.
N-terminal domain of eEIF-2B epsilon and gamma, subunits
of eukaryotic translation initiators, is a subfamily of
glycosyltranferase 2 and is predicted to have
glycosyltranferase activity. eIF-2B is a guanine
nucleotide-exchange factor which mediates the exchange
of GDP (bound to initiation factor eIF2) for GTP,
generating active eIF2.GTP complex. EIF2B is a complex
multimeric protein consisting of five subunits named
alpha, beta, gamma, delta and epsilon. Subunit epsilon
shares sequence similarity with gamma subunit, and with
a family of bifunctional nucleotide-binding enzymes such
as ADP-glucose pyrophosphorylase, suggesting that
epsilon subunit may play roles in nucleotide binding
activity. In yeast, eIF2B gamma enhances the activity of
eIF2B-epsilon leading to the idea that these subunits
form the catalytic subcomplex.
Length = 216
Score = 48.8 bits (117), Expect = 3e-06
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 7 AIVLAAGRGHRMK---SSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITR 63
A+VLA G G R S K L +A P+I + +E + AG+E V +V ++ I
Sbjct: 3 AVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIE 62
Query: 64 -------INFPPTLSV-EYYIQDCQQ-GTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSH 114
+ + V C+ G A + + I+ D +++ D+ VS+
Sbjct: 63 HLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIR---SDFLLLSCDL--VSNI 117
Query: 115 TLKKAMDKIAQ 125
L + +++ +
Sbjct: 118 PLSELLEERRK 128
>gnl|CDD|100041 cd03350, LbH_THP_succinylT,
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase
catalyzes the conversion of tetrahydrodipicolinate and
succinyl-CoA to N-succinyltetrahydrodipicolinate and
CoA. It is the committed step in the succinylase pathway
by which bacteria synthesize L-lysine and
meso-diaminopimelate, a component of peptidoglycan. The
enzyme is homotrimeric and each subunit contains an
N-terminal region with alpha helices and hairpin loops,
as well as a C-terminal region with a left-handed
parallel alpha-helix (LbH) structural motif encoded by
hexapeptide repeat motifs..
Length = 139
Score = 48.5 bits (116), Expect = 3e-06
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 34/143 (23%)
Query: 315 ARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSV-------------VGKNV 361
R+ I IG A + S +N +YV + +GKNV
Sbjct: 2 RRVPPGAIIRDGAFIG-----PGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNV 56
Query: 362 NIGAGT-ITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDT---- 416
++ AG I + I ++ FIG+N ++ + +G+G +A+G ++TQ T
Sbjct: 57 HLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYD 116
Query: 417 -----------PENSLVFARSRQ 428
P S+V A S
Sbjct: 117 RETGEIYYGRVPPGSVVVAGSLP 139
>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine
O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins
in this family catalyze the transfer of
(R)-3-hydroxymyristic acid from its acyl carrier protein
thioester to UDP-GlcNAc. It is the first enzyme in the
lipid A biosynthetic pathway and is also referred to as
LpxA. Lipid A is essential for the growth of Escherichia
coli and related bacteria. It is also essential for
maintaining the integrity of the outer membrane.
UDP-GlcNAc acyltransferase is a homotrimer of
left-handed parallel beta helix (LbH) subunits. Each
subunit contains an N-terminal LbH region with 9 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
and a C-terminal alpha-helical region..
Length = 254
Score = 48.6 bits (117), Expect = 4e-06
Identities = 52/202 (25%), Positives = 74/202 (36%), Gaps = 60/202 (29%)
Query: 250 MISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKT 309
MI ++ P + + I P VI P+V G G I ++V I IGK
Sbjct: 1 MIHPTAIVDPGAK-IGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDG-----PTTIGKNN 54
Query: 310 IIGPFARI---------RQETTIEKNVRIGNFCEVKKATIKEGSKIN-------HLSYVG 353
I PFA I + E T + IG+ TI+E I+ ++ +G
Sbjct: 55 RIFPFASIGEAPQDLKYKGEPTR---LEIGDNN-----TIREFVTIHRGTAQGGGVTRIG 106
Query: 354 -------------DSVVGKNVNIG-----AGTITCNYDGTHKYKTHINENAFIGSNSSLI 395
D V+G NV + AG H I + A IG S++
Sbjct: 107 NNNLLMAYVHVAHDCVIGNNVILANNATLAG---------H---VEIGDYAIIGGLSAVH 154
Query: 396 APITIGQGTYVASGSIITQDTP 417
IG+ V GS + QD P
Sbjct: 155 QFCRIGRHAMVGGGSGVVQDVP 176
>gnl|CDD|31406 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 48.3 bits (115), Expect = 4e-06
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGI-ENVALVLGYGAEEITRI- 64
A++LAAG G R+ K L ++ G+ +I +E +A AGI E V + GY A+ +
Sbjct: 6 AVILAAGFGSRLGPDIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFL 65
Query: 65 -NFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKI 123
+P + + T +++L A+D + I++ D + L++ ++
Sbjct: 66 KKYPFNAKIVINSDYEKTNTGYSLLLAKDYMD---GRFILVMSDH-VYEPSILERLLEAP 121
Query: 124 AQGYSIAVVGFNADNPKGYGRLLIKNNEIIAI 155
+G + + ++ + I+ I
Sbjct: 122 GEGLIVDRRPRYVGV-EEATKVKDEGGRIVEI 152
>gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B, gamma
subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal
structure and biogenesis].
Length = 433
Score = 47.6 bits (113), Expect = 6e-06
Identities = 94/451 (20%), Positives = 158/451 (35%), Gaps = 76/451 (16%)
Query: 7 AIVLAAGRGHRMK---SSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEIT- 62
A+VLA G G RM S K L I KPMI + + ++ AG + +V+ +
Sbjct: 12 AVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIE 71
Query: 63 ---RINFPPTLSVEYYIQDC----QQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHT 115
N +Y GTA ++ IK D +++ D V+
Sbjct: 72 SALGSNIDLKKRPDYVEIPTDDNSDFGTADSLRYIYSKIKSE--DFLVLSCD--FVTDVP 127
Query: 116 LKKAMDKI-AQGYSIAVVGFNADNP---KGYGRLLIKNNEIIAIREEN-------DATDE 164
L+ +DK A S+A++ NA + G + ++I I E+ D+ DE
Sbjct: 128 LQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSADE 187
Query: 165 ERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQE 224
E + S L L + L+ + Y + + +SI+S
Sbjct: 188 EEPLVIRKSLLWNHPRLTLTTKLV------DAHIYVFKHWVIDLLSEKESISSF------ 235
Query: 225 VCGCNNRYEL--SLIENIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFF 282
+ + L++ +Q + ET L + PD + P
Sbjct: 236 ------KADFLPYLVKKQFQKNP---------PLKKNETSILPTPNLNNPDGIHSPDDRI 280
Query: 283 GCGV----SIENYVQIRAF-SYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKK 337
C + +V+ SY+E ++ KK ++ E KN
Sbjct: 281 KCYAYILPTESLFVRANTLLSYME-INRDKK-----LKKLCSEAKFVKNYVKKVALVGAD 334
Query: 338 ATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNY---------DGTHKYKTHINENAFI 388
+ + + ++I S + SV+G N +IG N DG + + I A I
Sbjct: 335 SIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQI 394
Query: 389 GSNSSLIAPITIGQGTYVASGSIITQDTPEN 419
GS S L I IG G V + + +
Sbjct: 395 GSGSKLKNCI-IGPGYVVEAKGKHGGEVLVS 424
>gnl|CDD|36673 KOG1460, KOG1460, KOG1460, GDP-mannose pyrophosphorylase
[Carbohydrate transport and metabolism, Cell
wall/membrane/envelope biogenesis, Posttranslational
modification, protein turnover, chaperones].
Length = 407
Score = 47.6 bits (113), Expect = 7e-06
Identities = 77/380 (20%), Positives = 128/380 (33%), Gaps = 88/380 (23%)
Query: 7 AIVLAAG--RGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVA--LVLGYGAE 59
A++L G +G R + S K L IAG PMI H + A I +A L++G+ E
Sbjct: 5 AVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHIS--ACKQISGLAEILLVGFYEE 62
Query: 60 E-----ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGY-DDVIIMYGDV----P 109
I+ I + V Y +D GTA + +D I G V ++ DV P
Sbjct: 63 RVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFP 122
Query: 110 L---VSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEER 166
L + +H + ++ V + + +G L+ +
Sbjct: 123 LQDMLEAHRRYGGI------GTLLVTKVSREQASNFGCLV-------------EDPSTGE 163
Query: 167 KIHYCNSGLMAID-----GLYIMD-WLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDV 220
+HY + G+Y+ + Q L ++ + L A
Sbjct: 164 VLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIR 223
Query: 221 KEQEV----CGCNNRYELSLIENIWQ----------------SRYRR---QMMISG---- 253
EQ+V G Y + W S+Y+R + G
Sbjct: 224 LEQDVLSPLAGSKQLYAY-ETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQ 282
Query: 254 VTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHI-------- 305
+I V++ + P I P+V G V + V++R L+ I
Sbjct: 283 AEIIGD--VYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLH 340
Query: 306 ---GKKTIIGPFARIRQETT 322
G K+ IG +AR+
Sbjct: 341 SIIGWKSSIGRWARVEGIPV 360
>gnl|CDD|31280 COG1083, NeuA, CMP-N-acetylneuraminic acid synthetase [Cell
envelope biogenesis, outer membrane].
Length = 228
Score = 46.4 bits (110), Expect = 2e-05
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 24/169 (14%)
Query: 4 KRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMET-----------IAAAGIENVAL 52
K +AI+ A G +K+ K ++K GKP+I + +E I++ E +
Sbjct: 3 KNIAIIPARGGSKGIKN---KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEE 59
Query: 53 VLGYGAE-EITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLV 111
YGA+ + R P L+ + T A L A ++ D +I++ PL+
Sbjct: 60 AKKYGAKVFLKR---PKELASDR------ASTIDAALHALESFNIDEDTLILLQPTSPLL 110
Query: 112 SSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREEND 160
+S +K+A +K ++ Y + N E+ + E+ D
Sbjct: 111 TSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVNEDPD 159
>gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the
biosynthesis of the polysaccharide capsule.
GT2_BcbE_like: The bcbE gene is one of the genes in the
capsule biosynthetic locus of Pasteurella multocida. Its
deducted product is likely involved in the biosynthesis
of the polysaccharide capsule, which is found on surface
of a wide range of bacteria. It is a subfamily of
Glycosyltransferase Family GT2, which includes diverse
families of glycosyltransferases with a common GT-A type
structural fold, which has two tightly associated
beta/alpha/beta domains that tend to form a continuous
central sheet of at least eight beta-strands. These are
enzymes that catalyze the transfer of sugar moieties
from activated donor molecules to specific acceptor
molecules, forming glycosidic bonds.
Length = 231
Score = 46.1 bits (110), Expect = 2e-05
Identities = 61/245 (24%), Positives = 97/245 (39%), Gaps = 34/245 (13%)
Query: 8 IVLAAGRGHRMKS---SSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRI 64
I+ AG G R K + K L ++ GKPMI V+E++A + E T
Sbjct: 2 IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFI--CRDEHNT-- 57
Query: 65 NFPPTLSVEYYIQDCQ--------QGTAHAVLTAQDAIKPGYDD-VIIMYGDVPLVSSHT 115
F S++ + G A VL A D I DD ++I D +V S
Sbjct: 58 KFHLDESLKLLAPNATVVELDGETLGAACTVLLAADLIDN--DDPLLIFNCDQ-IVESDL 114
Query: 116 LKKAMDKIAQGYSIAVVGFNADNPK-GYGRLLIKNNEIIAIREEN----DATDEERKIHY 170
L + V+ F + +P+ Y +L +N +I E+ AT ++Y
Sbjct: 115 LAFLAAFRERDLDGGVLTFFSSHPRWSYVKLD-ENGRVIETAEKEPISDLATA---GLYY 170
Query: 171 CNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGK--SIASIDVKEQEVCGC 228
SG + ++ M K + V+ E+Y++ + + LDGK I ID + G
Sbjct: 171 FKSGSLFVEAAKKM----IRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGT 226
Query: 229 NNRYE 233
E
Sbjct: 227 PEDLE 231
>gnl|CDD|31245 COG1043, LpxA, Acyl-[acyl carrier protein].
Length = 260
Score = 45.6 bits (108), Expect = 3e-05
Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 42/193 (21%)
Query: 255 TMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPF 314
T I + D I P +I P+V G G ++++V + + IG+ I PF
Sbjct: 9 TAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHT-----TIGRNNRIFPF 63
Query: 315 ARI------------RQETTIEKNVRIGNFCEVKKATIKEGSK--------------INH 348
A I I N I F + + T++ G + H
Sbjct: 64 ASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAH 123
Query: 349 LSYVGDSVVGKN-------VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSL---IAPI 398
+G++ + N V +G I H++ I +A IG S++ + P
Sbjct: 124 DCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQF-VRIGAHAMIGGLSAVSQDVPPY 182
Query: 399 TIGQGTYVASGSI 411
I G + +
Sbjct: 183 VIASGNHARLRGL 195
Score = 44.4 bits (105), Expect = 7e-05
Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 22/181 (12%)
Query: 255 TMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEG-VHIGKKTIIGP 313
I P T + I D I P G V I + +++ +EG IG+ I P
Sbjct: 4 AKIHP-TAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFP 62
Query: 314 FARI------------RQETTIEKNVRIGNFCEVKKATIKEGSKI---NHLSYVGDSVVG 358
FA I I N I F + + T++ G ++ + + V
Sbjct: 63 FASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVA 122
Query: 359 KNVNIGAGTITCNYD--GTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDT 416
+ IG I N H + + A IG S++ + IG + S ++QD
Sbjct: 123 HDCVIGNNCILANNATLAGH---VEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDV 179
Query: 417 P 417
P
Sbjct: 180 P 180
Score = 37.5 bits (87), Expect = 0.007
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 307 KKTIIGPFARIRQETTIEKNVRIGNFCEV-KKATIKEGSKI-NHLSYVGDSVVGKNVNIG 364
K I P A I I ++V+IG FC + I +G+ + +H+ G + +G+N I
Sbjct: 2 KMAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIF 61
Query: 365 AGTITCNYDGTHKYKTHINENAF--IGSNSSLIAPITIGQGT 404
KYK E IG N+++ +TI +GT
Sbjct: 62 PFASIGEDPQDLKYK---GEPTRLIIGDNNTIREFVTIHRGT 100
>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This
family is composed of gamma carbonic anhydrase (CA),
Ferripyochelin Binding Protein (FBP), E. coli paaY
protein, and similar proteins. CAs are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism, involving the
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Gamma CAs are
trimeric enzymes with left-handed parallel beta helix
(LbH) structural domain..
Length = 153
Score = 45.5 bits (109), Expect = 3e-05
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVN 362
V +G+ + + A +R + +RIG I++GS + H+ +++G NV
Sbjct: 18 VTLGEGSSVWFGAVLRGD---VNPIRIGERT-----NIQDGSVL-HVDPGYPTIIGDNVT 68
Query: 363 IGAGTI--TCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDT--PE 418
+G G + C I +N IG + ++ IG+G+ VA+GS++ P
Sbjct: 69 VGHGAVLHGC----------TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPP 118
Query: 419 NSLVFARSRQIVKE 432
SLV ++V+E
Sbjct: 119 GSLVAGSPAKVVRE 132
Score = 35.1 bits (82), Expect = 0.042
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 260 ETVFLSHDTIIQPDTVIEPH--VFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARI 317
+ F++ + + D + V+FG V +R + + IG++T I + +
Sbjct: 4 PSAFIAPNATVIGDVTLGEGSSVWFGA-------V-LRG--DVNPIRIGERTNIQDGSVL 53
Query: 318 RQE----TTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGD-SVVGKNVNIGAGTIT 369
+ T I NV +G+ + TI + I + + D +V+GK + AG++
Sbjct: 54 HVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLV 110
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the
M1P-guanylyltransferase B-isoform like proteins.
GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain and a C-terminal Lefthanded-beta-Helix
fold domain. GDP-d-mannose is the activated form of
mannose for formation of cell wall lipoarabinomannan and
various mannose-containing glycolipids and
polysaccharides. The function of GDP-mannose
pyrophosphorylase is essential for cell wall integrity,
morphogenesis and viability. Repression of GDP-mannose
pyrophosphorylase in yeast leads to phenotypes, such as
cell lysis, defective cell wall, and failure of
polarized growth and cell separation.
Length = 233
Score = 45.3 bits (108), Expect = 3e-05
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 7 AIVLAAGRGHRMKS---SSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITR 63
A++L G G R++ + K L + KPMI H +E +A AG++ + L + Y E++
Sbjct: 3 ALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVP 62
Query: 64 I--NFPPTLSVE--YYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDV 108
+ L ++ + I+ GTA + A+D + + ++ DV
Sbjct: 63 FLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDV 111
>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase
catalyzes the production of CDP-D-Glucose.
Alpha-D-Glucose-1-phosphate Cytidylyltransferase
catalyzes the production of CDP-D-Glucose from
alpha-D-Glucose-1-phosphate and MgCTP as substrate.
CDP-D-Glucose is the precursor for synthesizing four
of the five naturally occurring 3,6-dideoxy
sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose
(3,6-dideoxy-L-arabino-hexose), paratose
(3,6-dideoxy-D-ribohexose), and tyvelose
(3,6-dideoxy-D-arabino-hexose. Deoxysugars are
ubiquitous in nature where they function in a variety
of biological processes, including cell adhesion,
immune response, determination of ABO blood groups,
fertilization, antibiotic function, and microbial
pathogenicity.
Length = 253
Score = 44.9 bits (107), Expect = 4e-05
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 7 AIVLAAGRGHRMKSSSS---KVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEI 61
++LA G G R+ + K + +I G+P++ H+M+ + G + L LGY I
Sbjct: 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVI 58
>gnl|CDD|31405 COG1212, KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell
envelope biogenesis, outer membrane].
Length = 247
Score = 44.9 bits (106), Expect = 5e-05
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 17 RMKSS--SSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSVEY 74
R+ S+ K L I GKPMI V E +G + V V+ E I
Sbjct: 11 RLASTRLPGKPLADIGGKPMIVRVAERALKSGADRV--VVATDDERIAEAVQAFGGEAVM 68
Query: 75 YIQDCQQGTAHAVLTAQDAIKPGYDDVIIMY-GDVPLVSSHTLKKAMDKIAQG 126
+D Q GT + + + D++I+ GD P + ++ + +
Sbjct: 69 TSKDHQSGTDR-LAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS 120
>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic
anhydrases are zinc-containing enzymes that catalyze the
reversible hydration of carbon dioxide in a two-step
mechanism, involving the nucleophilic attack of a
zinc-bound hydroxide ion on carbon dioxide, followed by
the regeneration of the active site by ionization of the
zinc-bound water molecule and removal of a proton from
the active site. They are ubiquitous enzymes involved in
fundamental processes like photosynthesis, respiration,
pH homeostasis and ion transport. There are three
distinct groups of carbonic anhydrases - alpha, beta
and gamma - which show no significant sequence identity
or structural similarity. Gamma CAs are homotrimeric
enzymes, with each subunit containing a left-handed
parallel beta helix (LbH) structural domain..
Length = 167
Score = 44.9 bits (107), Expect = 5e-05
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 25/132 (18%)
Query: 303 VHIGKKTIIGPFARIR-QETTIEKNVRIGNFCEVK-----------KATIKEGSKINHLS 350
V IG +GP A IR E T + IG ++ I + I H +
Sbjct: 21 VIIGDNVFVGPGASIRADEGT---PIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGA 77
Query: 351 YV-GDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASG 409
V G + +G N IG ++ + + +N IG N+ ++ + I G YV +G
Sbjct: 78 IVHGPAYIGDNCFIGFRSVV--------FNAKVGDNCVIGHNA-VVDGVEIPPGRYVPAG 128
Query: 410 SIITQDTPENSL 421
++IT T ++L
Sbjct: 129 AVITSQTQADAL 140
Score = 29.9 bits (68), Expect = 1.4
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 382 INENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPE 418
I+ +A++ + +I + IG +V G+ I D
Sbjct: 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGT 41
>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of
glucose-1-phosphate thymidylyltransferase. This family
is the short form of glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.There are two forms of Glucose-1-phosphate
thymidylyltransferase in bacteria and archeae; short
form and long form. The homotetrameric, feedback
inhibited short form is found in numerous bacterial
species that produce dTDP-L-rhamnose. The long form,
which has an extra 50 amino acids c-terminal, is found
in many species for which it serves as a
sugar-activating enzyme for antibiotic biosynthesis and
or other, unknown pathways, and in which dTDP-L-rhamnose
is not necessarily produced.
Length = 240
Score = 44.5 bits (106), Expect = 6e-05
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 38/196 (19%)
Query: 7 AIVLAAGRGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVALV---------- 53
I+LA G G R+ + SK L + KPMI + + T+ AGI + ++
Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFK 62
Query: 54 --LGYGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLV 111
LG G++ RI Y +Q G A A + ++ I G D V ++ GD +
Sbjct: 63 ELLGDGSDLGIRI--------TYAVQPKPGGLAQAFIIGEEFI--GDDPVCLILGD-NIF 111
Query: 112 SSHTLKKAMDKIAQGYSIAVV-GFNADNPKGYGRLLI-KNNEIIAIREENDATDEERKIH 169
L + + A A V G+ ++P+ YG + +N +++I E+ ++ K +
Sbjct: 112 YGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEEK----PKKPKSN 167
Query: 170 YCNSGLMAIDGLYIMD 185
Y A+ GLY D
Sbjct: 168 Y------AVTGLYFYD 177
>gnl|CDD|34365 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved
in choline phosphorylation for cell surface LPS
epitopes [Cell envelope biogenesis, outer membrane].
Length = 231
Score = 44.1 bits (104), Expect = 8e-05
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 7 AIVLAAGRGHRMKS---SSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60
AI+LAAG G R S+ K L K+ G+P+I +E + AGI+++ +V+GY E+
Sbjct: 3 AIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQ 59
>gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the
activation of KDO which is an essential component of the
lipopolysaccharide. CMP-KDO Synthetase:
3-Deoxy-D-manno-octulosonate cytidylyltransferase
(CMP-KDO synthetase) catalyzes the conversion of CTP and
3-deoxy-D-manno-octulosonate into
CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and
pyrophosphate. KDO is an essential component of the
lipopolysaccharide found in the outer surface of
gram-negative eubacteria. It is also a constituent of
the capsular polysaccharides of some gram-negative
eubacteria. Its presence in the cell wall
polysaccharides of green algae and plant were also
discovered. However, they have not been found in yeast
and animals. The absence of the enzyme in mammalian
cells makes it an attractive target molecule for drug
design.
Length = 239
Score = 44.0 bits (105), Expect = 9e-05
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 36/113 (31%)
Query: 17 RMKSS--SSKVLQKIAGKPMISHVME-TIAAAGIENV----------ALVLGYGAEEI-T 62
R SS K L IAGKPMI HV E A G++ V V +G + + T
Sbjct: 9 RYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVESFGGKVVMT 68
Query: 63 RINFPPTLSVEYYIQDCQQGT---AHAVLTAQDAIKPGYDDVIIMY-GDVPLV 111
D GT A DD+++ GD PL+
Sbjct: 69 SP-------------DHPSGTDRIAEVAE-----KLDADDDIVVNVQGDEPLI 103
>gnl|CDD|30797 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 393
Score = 43.6 bits (103), Expect = 1e-04
Identities = 86/435 (19%), Positives = 142/435 (32%), Gaps = 111/435 (25%)
Query: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKP---------MISHVMETIAAAGIENVA 51
MK+ LAI+LA GRG R+ L K KP +I + +GI +
Sbjct: 2 MKKNVLAIILAGGRGSRLSP-----LTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIG 56
Query: 52 LVLGYGAEEIT------------RIN-----FPPTLSVEYYIQDCQQGTAHAVLTAQDAI 94
++ Y + + R N P + +GTA A+ I
Sbjct: 57 VLTQYKSHSLNDHIGRGWPWDLDRKNGGVFILPAQQREGG--ERWYEGTADAIYQNLLII 114
Query: 95 KP-GYDDVIIMYGDV-------PLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLL 146
+ + V+I+ GD ++ H A ++AV + +G +
Sbjct: 115 RRSDPEYVLILSGDHIYKMDYSDMLDFHIESGA------DVTVAVKEVPREEASRFGVMN 168
Query: 147 I-KNNEIIAIREENDATDEERKIHYCNSGLMAIDGLYIMDWLLQIK------KNKVSQEY 199
+ +N II E+ + A G+YI + L + K+ S
Sbjct: 169 VDENGRIIEFVEKPADGPPSNSL--------ASMGIYIFNTDLLKELLEEDAKDPNSSHD 220
Query: 200 YLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSL-------IENIWQSR-------- 244
+ DII K GK A YE S I++ +++
Sbjct: 221 FGKDIIPKLLERGKVYA---------------YEFSGYWRDVGTIDSYYEANMDLLSPQP 265
Query: 245 ----YRRQMMISGVTMIAPETVFLSH----DTIIQPDTVIEPHVF---FGCGVSIENYVQ 293
Y R I P F++ ++++ +I V GV I
Sbjct: 266 ELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISGTVENSVLFRGVRIGKGSV 325
Query: 294 IRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVG 353
I + V IG+ ++ + I+KNV IG + +E K S G
Sbjct: 326 IENSVIMPDVEIGEGAVL-------RRAIIDKNVVIGEGVVIGGDKPEEDRK-RFRSEEG 377
Query: 354 DSVVGKNVNIGAGTI 368
VV K + I +
Sbjct: 378 IVVVPKGMVIKLDIM 392
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of
the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of gamma subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
gamma shares sequence similarity with epsilon subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 214
Score = 41.5 bits (98), Expect = 4e-04
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 22/131 (16%)
Query: 7 AIVLAAGRGHRM---KSSSSKVLQKIAGKPMISHVMETIAAAGIENVALV--------LG 55
A++LA G G R+ + K L +A KPMI + ++ + AG E+V +V +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEIS 62
Query: 56 YGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGD-------V 108
L + D GTA ++ + IK D +++ D +
Sbjct: 63 TYLRSFPLNLKQK-LDEVTIVLDEDMGTADSLRHIRKKIK---KDFLVLSCDLITDLPLI 118
Query: 109 PLVSSHTLKKA 119
LV H A
Sbjct: 119 ELVDLHRSHDA 129
>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and
Galactoside O-acetyltransferase (GAT): MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively at the C6
position of the nonreducing end glucosyl moiety. GAT
specifically acetylates galactopyranosides. Furthermore,
MAT shows higher affinity toward artificial substrates
containing an alkyl or hydrophobic chain as well as a
glucosyl unit. Active MAT and GAT are homotrimers, with
each subunit consisting of an N-terminal alpha-helical
region and a C-terminal left-handed parallel alpha-helix
(LbH) subdomain with 6 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X)..
Length = 169
Score = 41.6 bits (99), Expect = 5e-04
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 381 HINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV 422
I +N +IG ++ +TIG + + +GS++T+D P N +
Sbjct: 120 TIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVA 161
Score = 30.9 bits (71), Expect = 0.78
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 357 VGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSL--IAPITIGQGTYVASG-SIIT 413
VG+NV I C+Y G + HI +N + N ++ +AP+TIG + I T
Sbjct: 45 VGENVYIEP-PFHCDY-GYN---IHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYT 99
Score = 27.8 bits (63), Expect = 7.0
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 275 VIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIG 312
I +V+ G GV I L GV IG ++IG
Sbjct: 120 TIGDNVWIGGGVII-----------LPGVTIGDNSVIG 146
>gnl|CDD|144646 pfam01128, IspD, Uncharacterized protein family UPF0007.
Length = 221
Score = 41.3 bits (97), Expect = 5e-04
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAG-IENVALVLG-YGAEEITRI 64
A++ AAG G RM + K ++ G+P++ H ++ A+ ++ + + + E ++
Sbjct: 3 AVIPAAGSGKRMGAGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFRQL 62
Query: 65 NFPPTLSVEYYIQDCQQGT--AHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDK 122
P+ IQ G +VL A+ V++ G P + L + +
Sbjct: 63 LGDPS------IQLVAGGDTRQDSVLNGLKALAGTAKFVLVHDGARPCLPHADLARLLAA 116
Query: 123 IAQGYSIAV 131
+ G A+
Sbjct: 117 LETGTQGAI 125
>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the
protein product of the E. coli wcaF gene and similar
proteins. WcaF is part of the gene cluster responsible
for the biosynthesis of the extracellular polysaccharide
colanic acid. The wcaF protein is predicted to contain a
left-handed parallel beta-helix (LbH) domain encoded by
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity. Many are trimeric in their
active forms..
Length = 107
Score = 41.4 bits (98), Expect = 5e-04
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 22/108 (20%)
Query: 326 NVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKT----- 380
N+ IG+ I EG I +L+ V +G + I G C G+H Y++
Sbjct: 3 NLTIGDNS-----WIGEGVWIYNLAPV---TIGSDACISQGAYLCT--GSHDYRSPAFPL 52
Query: 381 -----HINENAFIGSNSSLIAP-ITIGQGTYVASGSIITQDTPENSLV 422
I + A++ + + + P +TIG+G V + S++ +D P ++
Sbjct: 53 ITAPIVIGDGAWVAAEA-FVGPGVTIGEGAVVGARSVVVRDLPAWTVY 99
>gnl|CDD|31089 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis
protein A [Coenzyme metabolism].
Length = 192
Score = 40.3 bits (94), Expect = 0.001
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60
M ++LA G+ RM+ K L + G+P+I HV++ + + V +
Sbjct: 1 MMTPMTGVILAGGKSRRMR---DKALLPLNGRPLIEHVIDRLRPQV-DVVVISANRNQGR 56
Query: 61 ITRINFPPTLSVEYYIQDC--QQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKK 118
P + D G +L A G + V+++ D+P + +++
Sbjct: 57 YAEFGLP-------VVPDELPGFGPLAGILAALRHF--GTEWVLVLPCDMPFIPPELVER 107
Query: 119 AMDKIAQGYSIAVV 132
+ Q + V
Sbjct: 108 LLSAFKQTGAAIVP 121
>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by
uncharacterized proteins with similarity to the protein
product of the E. coli paaY gene, which is part of the
paa gene cluster responsible for phenylacetic acid
degradation. Proteins in this group are expected to
adopt the left-handed parallel beta-helix (LbH)
structure. They contain imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Similarity to gamma carbonic anhydrase and
Ferripyochelin Binding Protein (FBP) may suggest metal
binding capacity..
Length = 155
Score = 40.0 bits (94), Expect = 0.001
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 29/137 (21%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKIN-----HLSYVGDSVV 357
V IGK IGP A +R G+F + I++G+ + H D+V+
Sbjct: 19 VIIGKNCYIGPHASLR-----------GDFGRI---VIRDGANVQDNCVIHGFPGQDTVL 64
Query: 358 GKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQ--D 415
+N +IG G I + I NA +G N+ ++ IG+ + V + + +
Sbjct: 65 EENGHIGHGAIL--------HGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTV 116
Query: 416 TPENSLVFARSRQIVKE 432
P SL+ ++++E
Sbjct: 117 IPPRSLIAGSPAKVIRE 133
>gnl|CDD|145475 pfam02348, CTP_transf_3, Cytidylyltransferase. This family
consists of two main Cytidylyltransferase activities: 1)
3-deoxy-manno-octulosonate cytidylyltransferase,,
EC:2.7.7.38 catalysing the reaction:- CTP +
3-deoxy-D-manno-octulosonate <=> diphosphate +
CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate
cytidylyltransferase EC:2.7.7.43,, catalysing the
reaction:- CTP + N-acylneuraminate <=> diphosphate +
CMP-N-acylneuraminate. NeuAc cytydilyltransferase of
Mannheimia haemolytica has been characterized describing
kinetics and regulation by substrate charge, energetic
charge and amino-sugar demand.
Length = 197
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 35/135 (25%)
Query: 6 LAIVLAAGRGHRMKSSS--SKVLQKIAGKPMISHVMETIAAAG-------------IENV 50
+AI+ A R S K L K+ GKP+I+ V+E + I ++
Sbjct: 1 IAIIPA-----RSGSKRLPGKNLLKLGGKPLIARVIEAALQSKLFDKVVVATDSEEIADI 55
Query: 51 ALVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPL 110
A G G + GT + A A + ++ + GD PL
Sbjct: 56 AEKFGGGV-----VVRRG---------SLASGT-DRFIEAVKAFLADEEIIVNLQGDEPL 100
Query: 111 VSSHTLKKAMDKIAQ 125
+ ++ +A++ + +
Sbjct: 101 LQPTSILRAIEHLRE 115
>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class
of hexapeptide acyltransferases is composed of a large
number of microbial enzymes that catalyze the
CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. Members of this class of
enzymes include Enterococcus faecium streptogramin A
acetyltransferase and Pseudomonas aeruginosa
chloramphenicol acetyltransferase. They contain repeated
copies of a six-residue hexapeptide repeat sequence
motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a
left-handed parallel beta helix (LbH) structure. The
active enzyme is a trimer with CoA and substrate binding
sites at the interface of two separate LbH subunits.
XATs are implicated in inactivating xenobiotics leading
to xenobiotic resistance in patients..
Length = 145
Score = 37.5 bits (88), Expect = 0.008
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 15/120 (12%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKI----NH-LSYVGDSVV 357
+ +G + + IG FC +I G KI NH +V
Sbjct: 2 ISVGDYSYGSGPDCDV----GGDKLSIGKFC-----SIAPGVKIGLGGNHPTDWVSTYPF 52
Query: 358 GKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTP 417
D K I + +IG ++++ +TIG G +A+G+++T+D P
Sbjct: 53 YIFGGEWEDDAK-FDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVP 111
>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH)
domain of a group of proteins with similarity to
glucose-1-phosphate adenylyltransferase: Included in
this family are glucose-1-phosphate adenylyltransferase,
mannose-1-phosphate guanylyltransferase, and the
eukaryotic translation initiation factor eIF-2B
subunits, epsilon and gamma. Most members of this family
contains an N-terminal catalytic domain that resembles a
dinucleotide-binding Rossmann fold, followed by a LbH
fold domain with at least 4 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an
additional domain of unknown function at the C-terminus.
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity..
Length = 79
Score = 37.2 bits (87), Expect = 0.009
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 288 IENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVK------KATIK 341
I I + ++ IG IG I + + NV IG + A I
Sbjct: 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTI-TNSILMDNVTIGANSVIVDSIIGDNAVIG 60
Query: 342 EGSKINHLSYVGDSVVGKNVNIGA 365
E ++ V ++G +V +
Sbjct: 61 ENVRV-----VNLCIIGDDVVVED 79
Score = 31.4 bits (72), Expect = 0.53
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 323 IEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHI 382
I ++ IG +K + I + +I + +S++ NV IGA ++ + + I
Sbjct: 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD--------SII 53
Query: 383 NENAFIGSNSSLIAPITIGQGTYV 406
+NA IG N ++ IG V
Sbjct: 54 GDNAVIGENVRVVNLCIIGDDVVV 77
Score = 28.4 bits (64), Expect = 4.6
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 260 ETVFLSHDTIIQPDTVIEPHVFFGCGVSIEN-----YVQIRAFSYLEGVHIGKKTIIGPF 314
E+ + + II+ +VI +V G GV+I N V I A S + IG +IG
Sbjct: 4 ESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGEN 62
Query: 315 ARIRQETTIEKNVRIGN 331
R+ I +V + +
Sbjct: 63 VRVVNLCIIGDDVVVED 79
>gnl|CDD|133011 cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the
synthesis of the spore coat. Spore coat polysaccharide
biosynthesis protein F (spsF) is a glycosyltransferase
implicated in the synthesis of the spore coat in a
variety of bacteria challenged by stress as starvation.
The spsF gene is expressed in the late stage of coat
development responsible for a terminal step in coat
formation that involves the glycosylation of the coat.
SpsF gene mutation resulted in spores that appeared
normal. But, the spores tended to aggregate and had
abnormal adsorption properties, indicating a surface
alteration.
Length = 233
Score = 37.2 bits (87), Expect = 0.009
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 6 LAIVLAAGRGHRMKSS--SSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGYGAEEIT 62
+AI+ A RM S+ KVL+ + GKP++ H+++ + + I+ + + E+
Sbjct: 1 VAIIQA-----RMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDP 55
Query: 63 RINFPPTLSVEYYIQDCQQGTAHAVLT--AQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM 120
L V+ + +G+ VL Q A + D V+ + GD PL+ + +
Sbjct: 56 LEALAKKLGVKVF-----RGSEEDVLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVI 110
Query: 121 DK 122
Sbjct: 111 RL 112
>gnl|CDD|32447 COG2266, COG2266, GTP:adenosylcobinamide-phosphate
guanylyltransferase [Coenzyme metabolism].
Length = 177
Score = 36.8 bits (85), Expect = 0.011
Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 26/160 (16%)
Query: 6 LAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITR-- 63
+AI++A GRG RM K L ++ GKP+I V+E ++ + + + +
Sbjct: 2 MAIIMAGGRGTRM-GRPEKPLLEVCGKPLIDRVLEA-LRKIVDEIIVAISPHTPKTKEYL 59
Query: 64 ----INFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKA 119
+ T E Y++D + P ++++ D+P ++ +
Sbjct: 60 ESVGVKVIET-PGEGYVEDLRFALESLG-------TP----ILVVSADLPFLNPSII--- 104
Query: 120 MDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREEN 159
D + + V GR+ + N + +EE
Sbjct: 105 -DSVIDAAASVEV--PIVTVVKAGRVPVGLNIVGGKQEEE 141
>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate
guanylyltransferase, C-terminal Left-handed parallel
beta helix (LbH) domain: Mannose-1-phosphate
guanylyltransferase is also known as GDP-mannose
pyrophosphorylase. It catalyzes the synthesis of
GDP-mannose from GTP and mannose-1-phosphate, and is
involved in the maintenance of cell wall integrity and
glycosylation. Similar to ADP-glucose pyrophosphorylase,
it contains an N-terminal catalytic domain that
resembles a dinucleotide-binding Rossmann fold and a
C-terminal LbH fold domain, presumably with 4 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity..
Length = 80
Score = 36.7 bits (85), Expect = 0.012
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 311 IGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIG 364
IG A+I I NV IG+ +++ I S + S+V S+VG N +G
Sbjct: 8 IGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVG 61
Score = 30.2 bits (68), Expect = 1.2
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 256 MIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYV-----QIRAFSYLEGVHIGKKTI 310
+I P + + I P+ VI P+V G GV ++ V +R S+++ +G +
Sbjct: 1 LIDP-SAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNST 59
Query: 311 IGPFARIRQETTIEKNVRIGN 331
+G + R+ T + +V I +
Sbjct: 60 VGRWTRLENVTVLGDDVTIKD 80
>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine nucleotide
exchange factor (GEF) composed of five different
subunits (alpha, beta, gamma, delta and epsilon). eIF2B
is important for regenerating GTP-bound eIF2 during the
initiation process. This event is obligatory for eIF2 to
bind initiator methionyl-tRNA, forming the ternary
initiation complex. The eIF-2B epsilon subunit contains
an N-terminal domain that resembles a
dinucleotide-binding Rossmann fold, a central LbH domain
containing 4 turns, each containing three imperfect
tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of
unknown function that is present in eIF-4 gamma, eIF-5,
and eIF-2B epsilon. The epsilon and gamma subunits form
the catalytic subcomplex of eIF-2B, which binds eIF2 and
catalyzes guanine nucleotide exchange..
Length = 79
Score = 35.6 bits (83), Expect = 0.024
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 305 IGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKA------TIKEGSKINHLSYVGDSV-V 357
IG+ T IG I+ + I +N +IG + + TI++G I+H S V D +
Sbjct: 2 IGRGTSIGEGTTIKN-SVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVI 59
Query: 358 GKNVNIGAGTI 368
GK I G++
Sbjct: 60 GKGCTIPPGSL 70
>gnl|CDD|133006 cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates
N-acetylneuraminic acid by adding CMP moiety.
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc
synthetase) or acylneuraminate cytidylyltransferase
catalyzes the transfer the CMP moiety of CTP to the
anomeric hydroxyl group of NeuAc in the presence of
Mg++. It is the second to last step in the sialylation
of the oligosaccharide component of glycoconjugates by
providing the activated sugar-nucleotide cytidine
5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac),
the substrate for sialyltransferases. Eukaryotic
CMP-NeuAc synthetases are predominantly located in the
nucleus. The activated CMP-Neu5Ac diffuses from the
nucleus into the cytoplasm.
Length = 223
Score = 35.2 bits (82), Expect = 0.039
Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 35/142 (24%)
Query: 4 KRLAIVLAAGRGH--RMKSSSSKVLQKIAGKPMISHVMET-IAAAGIENV---------- 50
K LAI+ A RG + K ++ + GKP+I+ +E + + + V
Sbjct: 1 KILAIIPA--RGGSKGIPG---KNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIA 55
Query: 51 ALVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIK------PGYDDVIIM 104
+ YGAE P L+ TA ++ A+ +D V+++
Sbjct: 56 EVARKYGAEVP--FLRPAELA---------TDTASSIDVILHALDQLEELGRDFDIVVLL 104
Query: 105 YGDVPLVSSHTLKKAMDKIAQG 126
PL S+ + +A++ +
Sbjct: 105 QPTSPLRSAEDIDEAIELLLSE 126
>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p25 is part of the pointed-end
subcomplex in dynactin that also includes p26, p27, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
indicating a left-handed parallel beta helix (LbH)
structural domain. Proteins containing hexapeptide
repeats are often enzymes showing acyltransferase
activity..
Length = 161
Score = 33.3 bits (77), Expect = 0.15
Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 25/115 (21%)
Query: 247 RQMMISGVTMIAPETVFLSHDTIIQPDTVIE---------PHVFFGCGVSIE-NYVQIRA 296
R+ +I G + + L+ TIIQ D +I + G I + +
Sbjct: 12 RKSVICG-----SQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSK 66
Query: 297 FSYLEGVHIGKKTIIGP-----FARIRQETTIEKNVRIGNFCEVKKATIKEGSKI 346
+HIG IG A+I I KN IG C IK+ KI
Sbjct: 67 GVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCI-----IKDCVKI 116
Score = 27.6 bits (62), Expect = 7.5
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 262 VFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEG------VHIGKKTIIGPFA 315
LS +I+P + I +YV I + VHIGK +IG
Sbjct: 49 CILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRC 108
Query: 316 ------RIRQETTIEKNVRIGNFCEV 335
+I T + + I + V
Sbjct: 109 IIKDCVKILDGTVVPPDTVIPPYSVV 134
>gnl|CDD|32046 COG1861, SpsF, Spore coat polysaccharide biosynthesis protein F,
CMP-KDO synthetase homolog [Cell envelope biogenesis,
outer membrane].
Length = 241
Score = 33.3 bits (76), Expect = 0.15
Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 15/168 (8%)
Query: 3 RKRLAIVLAAGRGHRMKSS--SSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60
+ +++ A RM S+ KVL + G+PMI + +E + + + +V+ +E
Sbjct: 1 MSMILVIIQA----RMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLD-KIVVATSDKE 55
Query: 61 ITRINFPPTLSVEYYIQDCQQGTAHAVLT--AQDAIKPGYDDVIIMYGDVPLVSSHTLKK 118
S +Y +G+ VL D V+ + GD P + +
Sbjct: 56 EDDALEEVCRSHGFY---VFRGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDA 112
Query: 119 AMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNE-IIAIREENDATDEE 165
A+D+ + + V A P G ++K A +E +A E
Sbjct: 113 AVDRHLEKGADYVSNTGA--PLGTDVEVMKARALKKAAKEALEAYYRE 158
>gnl|CDD|35651 KOG0430, KOG0430, KOG0430, Xanthine dehydrogenase [Nucleotide
transport and metabolism].
Length = 1257
Score = 32.6 bits (74), Expect = 0.20
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 31 GKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAH 85
G P + E I IE +A LG EE+ +INF S+ YY + Q T
Sbjct: 875 GSPQGILITENI----IERIAFELGKDPEEVRKINFYVEGSLTYYHGELQHCTLP 925
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 32.1 bits (73), Expect = 0.35
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 16/131 (12%)
Query: 36 SHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSV-----EYYIQDCQQGTA-HAVLT 89
S V+E A I VA+ +G+ + L V E++ G+ HA
Sbjct: 227 SAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAA 286
Query: 90 AQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGR----- 144
+ A D + + P+ + + +KA I++ + P G
Sbjct: 287 GEAA-----ADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLN 341
Query: 145 LLIKNNEIIAI 155
L IK ++ A+
Sbjct: 342 LTIKAGQLTAL 352
>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon
subunit of the eIF-2B is a subfamily of
glycosyltransferase 2. N-terminal domain of epsilon
subunit of the eukaryotic translation initiation factor
2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange
factor which mediates the exchange of GDP (bound to
initiation factor eIF2) for GTP, generating active
eIF2.GTP complex. EIF2B is a complex multimeric protein
consisting of five subunits named alpha, beta, gamma,
delta and epsilon. Subunit epsilon shares sequence
similarity with gamma subunit, and with a family of
bifunctional nucleotide-binding enzymes such as
ADP-glucose pyrophosphorylase, suggesting that epsilon
subunit may play roles in nucleotide binding activity.
In yeast, eIF2B gamma enhances the activity of
eIF2B-epsilon leading to the idea that these subunits
form the catalytic subcomplex.
Length = 217
Score = 30.7 bits (70), Expect = 0.83
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 7 AIVLAAGRGHRMK---SSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEI 61
A+VLA R + + L +A P+I + +E +A G+E V + +++I
Sbjct: 3 AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQI 60
>gnl|CDD|36580 KOG1366, KOG1366, KOG1366, Alpha-macroglobulin [Posttranslational
modification, protein turnover, chaperones].
Length = 1436
Score = 30.4 bits (68), Expect = 1.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 52 LVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGY 98
L L YG E INF P + V Y+ Q T A ++ GY
Sbjct: 931 LRLPYGCGEQNMINFAPNIYVLKYLPKTNQLTPELKRKALKFLEQGY 977
>gnl|CDD|31443 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 29.4 bits (66), Expect = 2.2
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 22/90 (24%)
Query: 142 YGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDGLYIMDWLLQ-IKKNKVSQEYY 200
Y +L++K+++I+ D +D WLL I K E
Sbjct: 352 YKKLVLKDDKIVGAVLYGDTSDG--------------------GWLLDLILKGADISEIR 391
Query: 201 LTDIIEKARLDGKSIASIDVKEQEVCGCNN 230
T I+ + + ++CGCN
Sbjct: 392 DTLILPQG-SAPSLGVAALPDSAQICGCNG 420
>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase,
C-terminal Left-handed parallel beta helix (LbH) domain:
Glucose-1-phosphate adenylyltransferase is also known as
ADP-glucose synthase or ADP-glucose pyrophosphorylase.
It catalyzes the first committed and rate-limiting step
in starch biosynthesis in plants and glycogen
biosynthesis in bacteria. It is the enzymatic site for
regulation of storage polysaccharide accumulation in
plants and bacteria. The enzyme is a homotetramer, with
each subunit containing an N-terminal catalytic domain
that resembles a dinucleotide-binding Rossmann fold and
a C-terminal LbH fold domain with at 5 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
The LbH domain is involved in cooperative allosteric
regulation and oligomerization..
Length = 104
Score = 29.0 bits (66), Expect = 2.8
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 12/49 (24%)
Query: 326 NVRIGNFCEVK------KATIKEGSKINHLSYVGDSVVGKNVNIGAGTI 368
VR+G+ V+ I + I +++ KNV I G +
Sbjct: 34 GVRVGSGSVVEDSVIMPNVGIGRNAVIRR------AIIDKNVVIPDGVV 76
>gnl|CDD|34006 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 472
Score = 28.7 bits (64), Expect = 3.2
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 2 KRKRLAIV-LAAGRGHRMKSSSSKVLQKIA-GKPMISHVMETIAAA 45
K +LA++ LA G+G R+ K L ++ GK + E I
Sbjct: 102 KLGKLAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKYL 147
>gnl|CDD|177096 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 28.5 bits (64), Expect = 4.2
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 179 DGLYIMDWLLQI-----KKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYE 233
DG +I+ + I K++++Q Y ++K D +SI + N Y+
Sbjct: 1668 DGQFIIYQTIGISLVHKNKHQINQRYREKKYVDKKNFD-ESITK--HQTITENRDKNHYD 1724
Query: 234 LSLIENIWQSRYRRQMMI 251
L + ENI + RR++ I
Sbjct: 1725 LLVPENILSPKRRRELRI 1742
>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine nucleotide
exchange factor (GEF) composed of five different
subunits (alpha, beta, gamma, delta and epsilon). eIF2B
is important for regenerating GTP-bound eIF2 during the
initiation process. This event is obligatory for eIF2 to
bind initiator methionyl-tRNA, forming the ternary
initiation complex. The eIF-2B gamma subunit contains an
N-terminal domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH domain with 4 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
The epsilon and gamma subunits form the catalytic
subcomplex of eIF-2B, which binds eIF2 and catalyzes
guanine nucleotide exchange..
Length = 81
Score = 28.3 bits (64), Expect = 4.5
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 305 IGKKTIIGPFARIRQETTIEKNVRIGNFCEV------KKATIKEGSKINHLSYVGDSVVG 358
IG IG +I I NV I + C + A I E K+ D +VG
Sbjct: 19 IGANCKIGKRVKITN-CVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK------DCLVG 71
Query: 359 KNVNIGAGTI 368
+ AGT
Sbjct: 72 SGYRVEAGTE 81
>gnl|CDD|37619 KOG2408, KOG2408, KOG2408, Peroxidase/oxygenase [General function
prediction only].
Length = 719
Score = 28.1 bits (62), Expect = 5.6
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 171 CNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNN 230
+ A++ LL+ +TD++ + L AS V Q C N
Sbjct: 85 IRLLIKAVEVREKSLLLLKRPVILSDNATNVTDLLPERHLHVNPRASGCVCSQPPPVCLN 144
Query: 231 RYELSLIENIWQSRYR 246
+ + S+YR
Sbjct: 145 --------DCFHSKYR 152
>gnl|CDD|32772 COG2949, SanA, Uncharacterized membrane protein [Function unknown].
Length = 235
Score = 27.6 bits (61), Expect = 6.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 123 IAQGYSIAVVGFNADNPKGYGRLLIKNNEIIA 154
IA+ I + F A +P+G L ++ E +A
Sbjct: 168 IARQMGIDAICFAAPDPEGRSGLSVRLREFLA 199
>gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p27 is part of the pointed-end
subcomplex in dynactin that also includes p25, p26, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain the imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed
parallel beta helix (LbH) structural domain. Proteins
containing hexapeptide repeats are often enzymes showing
acyltransferase activity..
Length = 164
Score = 27.7 bits (62), Expect = 6.6
Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 34/124 (27%)
Query: 264 LSHDTIIQPDTVIEPH---------VFFGCGVSIENYVQIR------------------- 295
+ D I P TV+ P + G IE V I
Sbjct: 14 IRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNN 73
Query: 296 AF---SYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYV 352
F E + IG + + + + I IG C++ + I + + Y
Sbjct: 74 VFEVGCKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTV---IYG 130
Query: 353 GDSV 356
D +
Sbjct: 131 ADCL 134
>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein
coupled receptors and their close homologs, the type I
periplasmic-binding proteins of ATP-binding cassette
transporter-like systems. This CD includes members of
the family C of G-protein coupled receptors and their
close homologs, the type I periplasmic-binding proteins
of ATP-binding cassette transporter-like systems. The
family C GPCR includes glutamate/glycine-gated ion
channels such as the NMDA receptor, G-protein-coupled
receptors, metabotropic glutamate, GABA-B, calcium
sensing, phermone receptors, and atrial natriuretic
peptide-guanylate cyclase receptors. The glutamate
receptors that form cation-selective ion channels,
iGluR, can be classified into three different subgroups
according to their binding-affinity for the agonists
NMDA (N-methyl-D-asparate), AMPA
(alpha-amino-3-dihydro-5-methyl-3-oxo-4-
isoxazolepropionic acid), and kainate. L-glutamate is a
major neurotransmitter in the brain of vertebrates and
acts through either mGluRs or iGluRs. mGluRs subunits
possess seven transmembrane segments and a large
N-terminal extracellular domain. ABC-type
leucine-isoleucine-valine-binding protein (LIVBP) is a
bacterial periplasmic binding protein that has homology
with the amino-terminal domain of the glutamate-receptor
ion channels (iGluRs). The extracellular regions of
iGluRs are made of two PBP-like domains in tandem, a
LIVBP-like domain that constitutes the N terminus -
which is included in this CD - followed by a domain
related to lysine-arginine-ornithine-binding protein
(LAOBP) that belongs to the type II periplasmic binding
fold protein superfamily. The uncharacterized
periplasmic components of various ABC-type transport
systems are included in this group.
Length = 299
Score = 27.8 bits (62), Expect = 6.6
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 56 YGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHT 115
EEI P +E I D Q A A+ A+ + D ++ VSS
Sbjct: 25 LAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGP-----VSSGV 79
Query: 116 LKKAMDKIAQGYSIAVVGFNADNP 139
+A+ I ++ A P
Sbjct: 80 ALAVAP-VAEALKIPLISPGATAP 102
>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent
quinone reductase activity (QOR). Zeta-crystallin is a
eye lens protein with NADP-dependent quinone reductase
activity (QOR). It has been cited as a structural
component in mammalian eyes, but also has homology to
quinone reductases in unrelated species. QOR catalyzes
the conversion of a quinone and NAD(P)H to a
hydroquinone and NAD(P+. Quinones are cyclic diones
derived from aromatic compounds. Membrane bound QOR acts
in the respiratory chains of bacteria and mitochondria,
while soluble QOR acts to protect from toxic quinones
(e.g. DT-diaphorase) or as a soluble eye-lens protein in
some vertebrates (e.g. zeta-crystalin). QOR reduces
quinones through a semi-quinone intermediate via a
NAD(P)H-dependent single electron transfer. QOR is a
member of the medium chain dehydrogenase/reductase
family, but lacks the zinc-binding sites of the
prototypical alcohol dehydrogenases of this group.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site, and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 325
Score = 27.2 bits (61), Expect = 9.9
Identities = 28/105 (26%), Positives = 35/105 (33%), Gaps = 20/105 (19%)
Query: 44 AAGIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAHAV-------LTAQ--DAI 94
A G V L GA I T S + +Q A AV L + A
Sbjct: 156 AVGHAAVQLARWAGARVIA------TASSAEGAELVRQAGADAVFNYRAEDLADRILAAT 209
Query: 95 KPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNP 139
DVII +V + L K +D +A G I V G
Sbjct: 210 AGQGVDVII---EVLANVN--LAKDLDVLAPGGRIVVYGSGGLRG 249
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,154,299
Number of extensions: 276772
Number of successful extensions: 1010
Number of sequences better than 10.0: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 144
Length of query: 442
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 345
Effective length of database: 4,167,664
Effective search space: 1437844080
Effective search space used: 1437844080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)