RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine
pyrophosphorylase protein [Candidatus Liberibacter asiaticus str.
psy62]
(442 letters)
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 634 bits (1638), Expect = 0.0
Identities = 214/442 (48%), Positives = 304/442 (68%)
Query: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60
R LAI+LAAG G RMKSS KVL +AG+PM++HV+ A+ G VA+V+G GAE
Sbjct: 2 TDRTCLAIILAAGEGTRMKSSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEA 61
Query: 61 ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM 120
+ E ++Q + GTAHAVL A++A+ GY DV+++YGD PL+++ TL +
Sbjct: 62 VAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLR 121
Query: 121 DKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDG 180
+++A G + V+GF A +P GYGRL++K ++AI EE DA+DEER I CNSG+MA DG
Sbjct: 122 ERLADGADVVVLGFRAADPTGYGRLIVKGGRLVAIVEEKDASDEERAITLCNSGVMAADG 181
Query: 181 LYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENI 240
+ L ++ + EYYLTDI+ AR +G +A ++ E EV G N+R EL+ E +
Sbjct: 182 ADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAV 241
Query: 241 WQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL 300
WQ+R RR M++GVT+IAPETVF S+DT+I D VIEP+V FG GV++ + I AFS+L
Sbjct: 242 WQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHL 301
Query: 301 EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN 360
EG H+G+ +GP+AR+R + + ++GNF EVK A + EG+K+NHL+Y+GD+ +G
Sbjct: 302 EGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAG 361
Query: 361 VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS 420
NIGAGTITCNYDG +K++T I AFIGSNS+L+AP+TIG G Y+ASGS+IT+D P+++
Sbjct: 362 ANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDA 421
Query: 421 LVFARSRQIVKEDGALSMRKKK 442
L R+RQ K A +R++
Sbjct: 422 LALGRARQETKPGWAKKLRERL 443
>gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes.
Length = 451
Score = 467 bits (1205), Expect = e-132
Identities = 180/455 (39%), Positives = 271/455 (59%), Gaps = 26/455 (5%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINF 66
++LAAG+G RMKS KVL +AGKPM+ HV++ A G + + +V G+GAE++ R
Sbjct: 3 VVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQV-RKAL 61
Query: 67 PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQG 126
V + +Q Q GT HAVL A + DV+++YGDVPL+S+ TL++ + + +
Sbjct: 62 A-NRDVNWVLQAEQLGTGHAVLQALPFLPDD-GDVLVLYGDVPLISAETLER-LLEAHRQ 118
Query: 127 YSIAVVGFNADNPKGYGRLLIKNN-EIIAIREENDATDEERKIHYCNSGLMAIDGLYIMD 185
I ++ +P GYGR++ +N+ ++ AI E+ DA E++ I N+G+ DG +
Sbjct: 119 NGITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKR 178
Query: 186 WLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKE-QEVCGCNNRYELSLIENIWQSR 244
WL ++ N EYYLTD+I A DG+++ ++ V + EV G N+R +L+ +E I Q R
Sbjct: 179 WLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRR 238
Query: 245 YRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFF--------------GC---GVS 287
++++++GVT+ P + I D I+P+V GC
Sbjct: 239 IAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSV 298
Query: 288 IENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKIN 347
I + V I+A+S LEG IG+ +GPFAR+R + + V IGNF E K A I +GSK
Sbjct: 299 IGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAG 358
Query: 348 HLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVA 407
HLSY+GD+ +G NVNIGAGTITCNYDG +K+KT I + FIGSN+ L+AP+ +G G +A
Sbjct: 359 HLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIA 418
Query: 408 SGSIITQDTPENSLVFARSRQIVKEDGALSMRKKK 442
+GS +T+D PE +L +R+RQ E +R KK
Sbjct: 419 AGSTVTKDVPEGALAISRARQRNIEGW---VRPKK 450
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 438 bits (1128), Expect = e-123
Identities = 183/461 (39%), Positives = 281/461 (60%), Gaps = 28/461 (6%)
Query: 4 KRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITR 63
R AI+LAAG+G RMKS KVL K+ GKPM+ HV++++ AGI+ + V+G+GAEE+
Sbjct: 2 NRYAIILAAGKGTRMKSKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKE 61
Query: 64 INFPPTLS--VEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMD 121
L E+ +Q+ Q GT HAV+ A++ + +++ GD PL+++ TLK +D
Sbjct: 62 -----VLGDRSEFALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLID 116
Query: 122 K-IAQGYSIAVVGFNADNPKGYGRLLI-KNNEIIAIREENDATDEERKIHYCNSGLMAID 179
+ ++ A+NP GYGR++ +N E+ I E+ DAT+EE++I N+G D
Sbjct: 117 FHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQKDATEEEKQIKEINTGTYCFD 176
Query: 180 GLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKE-QEVCGCNNRYELSLIE 238
+ + L +I + EYYLTD+IE + +G+ + + ++ +E G N+R L+ E
Sbjct: 177 NKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAE 236
Query: 239 NIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFF--------GCGV---- 286
+ + R + M++GVT+I PE+ ++ D I DTVIEP V C +
Sbjct: 237 KVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGS 296
Query: 287 -----SIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIK 341
+I + V I S +E +G +GPFA +R + I + V+IGNF E+KK+TI
Sbjct: 297 RIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIG 355
Query: 342 EGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIG 401
EG+K++HL+Y+GD+ VG+NVNIG GTIT NYDG +K+KT I +NAFIG NS+L+AP+T+G
Sbjct: 356 EGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVG 415
Query: 402 QGTYVASGSIITQDTPENSLVFARSRQIVKEDGALSMRKKK 442
Y+A+GS IT+D PE++L AR+RQ+ KE + KK
Sbjct: 416 DNAYIAAGSTITKDVPEDALAIARARQVNKEGYVKKLPHKK 456
>gnl|CDD|184644 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 377 bits (969), Expect = e-105
Identities = 190/454 (41%), Positives = 283/454 (62%), Gaps = 28/454 (6%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINF 66
A+VLAAG+G RMKS KVL KI+GKPMI+ V++T + V +VLG+ AE + ++
Sbjct: 3 ALVLAAGKGTRMKSKIPKVLHKISGKPMINWVIDTAKKVAQK-VGVVLGHEAELVKKL-L 60
Query: 67 PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDK-IAQ 125
P V+ ++Q+ Q GTAHAV+ A+D I+PG DD++I+YGDVPL+S +TLK+ +++ +
Sbjct: 61 PE--WVKIFLQEEQLGTAHAVMCARDFIEPG-DDLLILYGDVPLISENTLKRLIEEHNRK 117
Query: 126 GYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDGLYIMD 185
G + ++ + ++P GYGR+ I++ I E+ DA +EE+KI N+G+ G ++++
Sbjct: 118 GADVTILVADLEDPTGYGRI-IRDGGKYRIVEDKDAPEEEKKIKEINTGIYVFSGDFLLE 176
Query: 186 WLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENIWQSRY 245
L +IK EYYLTD + A + + + E+ G N R +L+ +E + R
Sbjct: 177 VLPKIKNENAKGEYYLTDAVNFA--EKVRVVKTE-DLLEITGVNTRIQLAWLEKQLRMRI 233
Query: 246 RRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFF--------GCGVS---------I 288
++M +GVT++ P T ++ +D I DT+I P F C + I
Sbjct: 234 LEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEI 293
Query: 289 ENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINH 348
N V+I S E I +GPF+R+R+ T ++K+V+IGNF E+KK+TI E +K H
Sbjct: 294 GNNVKIIR-SECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQH 352
Query: 349 LSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVAS 408
L+Y+GD+ VGKNVNIGAGTITCNYDG K T I + AFIGSNSSL+AP+ IG+G + +
Sbjct: 353 LTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGA 412
Query: 409 GSIITQDTPENSLVFARSRQIVKEDGALSMRKKK 442
GS+IT+D P SL R+RQIVKE L RK++
Sbjct: 413 GSVITEDVPPYSLALGRARQIVKEGWVLKKRKEE 446
>gnl|CDD|172831 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 364 bits (936), Expect = e-101
Identities = 173/455 (38%), Positives = 266/455 (58%), Gaps = 21/455 (4%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINF 66
AI+LAAG+G RMKS KV+ +AG+PM+S + AG + LV+G+ AE++ R +F
Sbjct: 6 AIILAAGKGTRMKSDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKV-REHF 64
Query: 67 PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDK-IAQ 125
V + +Q+ Q GT HAV A A+ V+I+ GDVPL+ + TL+ + A
Sbjct: 65 AGDGDVSFALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT 124
Query: 126 GYSIAVVGFNADNPKGYGRLLIK-NNEIIAIREENDATDEERKIHYCNSGLMAIDGLYIM 184
G ++ V+ +NP GYGR++ + ++ I EE DAT EER I NSG+ ++ ++
Sbjct: 125 GAAVTVLTARLENPFGYGRIVRDADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLF 184
Query: 185 DWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKE-QEVCGCNNRYELSLIENIWQS 243
D + ++ + EYYLTDI+ A +G + V + E+ G N+R +L+ + +
Sbjct: 185 DAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRR 244
Query: 244 RYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFF--------GC---------GV 286
R R++M++GVT+I PET ++ +I DT I P V GC G
Sbjct: 245 RINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGC 304
Query: 287 SIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKI 346
I + V ++A S LE +G IGP A +R T + +V+IGNF E KK + EGSK
Sbjct: 305 RIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKA 364
Query: 347 NHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYV 406
+HL+Y+GD+ +G+NVNIG GTITCNYDG K++T I ++ F+GS+ +AP+T+G+ + +
Sbjct: 365 SHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLI 424
Query: 407 ASGSIITQDTPENSLVFARSRQIVKEDGALSMRKK 441
A+G+ +T+D P +SL ARS Q+ KE L + K
Sbjct: 425 AAGTTVTKDVPPDSLAIARSPQVNKEGWKLRKKDK 459
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 360 bits (925), Expect = e-100
Identities = 171/465 (36%), Positives = 274/465 (58%), Gaps = 33/465 (7%)
Query: 1 MKRKRLAIV-LAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAE 59
M +++V LAAG+G RM S KVL +AGKPM+ HV++ G ++V LV G+G +
Sbjct: 1 MLNSAMSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGD 60
Query: 60 EI-TRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGY---DDVIIMYGDVPLVSSHT 115
+ + P + + +Q Q GT HA+ A P + +D++++YGDVPL+S T
Sbjct: 61 LLKQTLADEP---LNWVLQAEQLGTGHAMQQA----APFFADDEDILMLYGDVPLISVET 113
Query: 116 LKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGL 175
L++ D QG I ++ DNP GYGR+ +N +++ I E+ DATDE+R+I N+G+
Sbjct: 114 LQRLRDAKPQG-GIGLLTVKLDNPTGYGRITRENGKVVGIVEQKDATDEQRQIQEINTGI 172
Query: 176 MAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASID-VKEQEVCGCNNRYEL 234
+ +G + WL ++ N EYY+TDII A +G+ I ++ + EV G NNR +L
Sbjct: 173 LVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQL 232
Query: 235 SLIENIWQSRYRRQMMISGVTMIAPETVF-----LSH--DTIIQPDTVIEPHVFFGCGVS 287
+ +E ++Q+ +++++GV + P F L+H D I + +IE +V G V
Sbjct: 233 ARLERVYQAEQAEKLLLAGVMLRDPAR-FDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVK 291
Query: 288 I-----------ENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVK 336
I + +I +S +E ++G IGPFAR+R + + +GNF E+K
Sbjct: 292 IGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMK 351
Query: 337 KATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIA 396
KA + +GSK HL+Y+GD+ +G NVNIGAGTITCNYDG +K+KT I ++ F+GS++ L+A
Sbjct: 352 KARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVA 411
Query: 397 PITIGQGTYVASGSIITQDTPENSLVFARSRQIVKEDGALSMRKK 441
P+T+G+G + +G+ +T+D EN LV +R Q + ++KK
Sbjct: 412 PVTVGKGATIGAGTTVTRDVAENELVISRVPQRHIQGWQRPVKKK 456
>gnl|CDD|184645 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 430
Score = 353 bits (909), Expect = 4e-98
Identities = 166/432 (38%), Positives = 251/432 (58%), Gaps = 20/432 (4%)
Query: 8 IVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRI--- 64
I+LAAG+G RMKSS KVL I GKPM+ ++++ A A ++V +VL + E I
Sbjct: 6 IILAAGKGTRMKSSLPKVLHTICGKPMLFYILKE-AFAISDDVHVVLHHQKERIKEAVLE 64
Query: 65 NFPPTLSVEYYIQDCQQ--GTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDK 122
FP V ++ QD + GT A++ I+P ++ V+I+ GD+PLV L+K ++
Sbjct: 65 YFPG---VIFHTQDLENYPGTGGALM----GIEPKHERVLILNGDMPLVEKDELEKLLEN 117
Query: 123 IAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDGLY 182
A I + F+ +PKGYGR++I+N ++ I E+ DA +EE KI N+G+ D
Sbjct: 118 DAD---IVMSVFHLADPKGYGRVVIENGQVKKIVEQKDANEEELKIKSVNAGVYLFDRKL 174
Query: 183 IMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENIWQ 242
+ ++L +K +EYYLTDII A G++I ++ V E+ G N+++EL+ E I Q
Sbjct: 175 LEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQ 234
Query: 243 SRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEG 302
R ++ M GV M PET+++ + + +E V IEN I+A S +E
Sbjct: 235 ERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSH-IKAHSVIEE 293
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVN 362
I + + +GP A IR ++ I KN IGNF E K A + G K HLSY+GD + + N
Sbjct: 294 SII-ENSDVGPLAHIRPKSEI-KNTHIGNFVETKNAKLN-GVKAGHLSYLGDCEIDEGTN 350
Query: 363 IGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV 422
IGAGTITCNYDG K+KT I +N FIGS++ L+AP+ I +A+GS +T+D P+ SL
Sbjct: 351 IGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLA 410
Query: 423 FARSRQIVKEDG 434
+R+ Q ++
Sbjct: 411 ISRAPQKNIKNF 422
>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 450
Score = 343 bits (883), Expect = 4e-95
Identities = 168/456 (36%), Positives = 260/456 (57%), Gaps = 43/456 (9%)
Query: 6 LAI-VLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRI 64
LA+ +LAAG+G RMKSS KVL + GK ++ V+++ + +++G+ AEE+
Sbjct: 2 LAVAILAAGKGTRMKSSLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEV-EQ 60
Query: 65 NFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKP--GYD-DVIIMYGDVPLVSSHTLKKAMD 121
+ +E+ Q Q GT HAV Q + G++ D++++ GDVPL+ TL+ ++
Sbjct: 61 SLAHLPGLEFVEQQPQLGTGHAV---QQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLN 117
Query: 122 KIAQ-GYSIAVVGFNADNPKGYGRLLIKNNEII-AIREENDATDEERKIHYCNSGLMAID 179
+ ++ NPKGYGR+ N ++ I E+ D T +R+ + N+G+
Sbjct: 118 THRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDRDCTPAQRQNNRINAGI---- 173
Query: 180 GLYIMDW------LLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKE-QEVCGCNNRY 232
Y +W L ++ N +EYYLTD + + LD +A ++V++ QE+ G N+R
Sbjct: 174 --YCFNWPALAEVLPKLSSNNDQKEYYLTDTV--SLLD-PVMA-VEVEDYQEINGINDRK 227
Query: 233 ELSLIENIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYV 292
+L+ E I Q+R + + M++GVT I P + +S + PD +IEP I +
Sbjct: 228 QLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGC 287
Query: 293 QIRAFSYLEGVHIGKK----------------TIIGPFARIRQETTIEKNVRIGNFCEVK 336
+I S +E IG+ IGP+A +R E I N RIGNF E+K
Sbjct: 288 RIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK 347
Query: 337 KATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIA 396
K+ + EGSK+NHLSY+GD+ +G+ VNIGAGTIT NYDG K++T I + + G+NS L+A
Sbjct: 348 KSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVA 407
Query: 397 PITIGQGTYVASGSIITQDTPENSLVFARSRQIVKE 432
PIT+G+ VA+GS IT+D P+NSL ARSRQ++KE
Sbjct: 408 PITLGEDVTVAAGSTITKDVPDNSLAIARSRQVIKE 443
>gnl|CDD|172832 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 336 bits (863), Expect = 8e-93
Identities = 162/472 (34%), Positives = 251/472 (53%), Gaps = 47/472 (9%)
Query: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60
M A++LAAG+G RM S KVLQ + G+PM+ V + +NV V+G+ A+
Sbjct: 2 MASTTGALILAAGKGTRMHSDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADM 61
Query: 61 ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIK-PGYDDVIIMYGDVPLVSSHTLKKA 119
+ P + +Q+ Q GT HA+ A ++ G D V+++ GD PLV++ T+
Sbjct: 62 VRAAF--PDEDARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDF 119
Query: 120 MDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHY-----CNSG 174
+ + A G +A + +P YGR++ +N + AI E A D + +H N+G
Sbjct: 120 LKE-AAGADLAFMTLTLPDPGAYGRVVRRNGHVAAIVE---AKDYDEALHGPETGEVNAG 175
Query: 175 LMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQE-VCGCNNRYE 233
+ + + L ++ S EYY+TD++ A +G ++ ++ E + G N E
Sbjct: 176 IYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAE 235
Query: 234 LSLIENIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHV------------F 281
L E + ++R + + SGV + APE+V I P IEP
Sbjct: 236 LVRSEELLRARIVEKHLESGVLIHAPESV------RIGPRATIEPGAEIYGPCEIYGASR 289
Query: 282 FGCGVSIENYVQIR-----------AFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIG 330
G I ++ +R +FS+LEG +G +GP+AR+R +E+ R+G
Sbjct: 290 IARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVG 349
Query: 331 NFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGS 390
NF E+KKA + +G+K NHL+Y+GD+ +G NIGAGTITCNYDG +K++T I E AFIGS
Sbjct: 350 NFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGS 409
Query: 391 NSSLIAPITIGQGTYVASGSIITQDTPENSLVFARSRQIVKEDGALSMRKKK 442
N++L+AP+TIG G V +GS+IT+D P+ SL AR RQ L +KK
Sbjct: 410 NTALVAPVTIGDGALVGAGSVITKDVPDGSLAIARGRQKN-----LPRKKKA 456
>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 482
Score = 324 bits (833), Expect = 2e-89
Identities = 146/454 (32%), Positives = 233/454 (51%), Gaps = 44/454 (9%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINF 66
IVLAAG G RM+S + KVL +AG+ M+ HV+ A +++ +V+G+ E +
Sbjct: 7 VIVLAAGAGTRMRSDTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVA---- 62
Query: 67 PPTLS-----VEYYIQDCQQGTAHAVLTAQDAIKPGYDD-VIIMYGDVPLVSSHTLKKAM 120
P ++ V+ +QD Q GT HAV A +A+ +D V++ GDVPL+ TL +
Sbjct: 63 -PAVAELAPEVDIAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLV 121
Query: 121 DK-IAQGYSIAVVGFNADNPKGYGRLL-IKNNEIIAIREENDATDEERKIHYCNSGLMAI 178
A+G ++ V+ D+P GYGR+L ++ E+ AI E+ DAT +R I NSG+ A
Sbjct: 122 ATHTAEGNAVTVLTTTLDDPTGYGRILRDQDGEVTAIVEQKDATPSQRAIREVNSGVYAF 181
Query: 179 DGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKE-QEVCGCNNRYELSLI 237
D + L ++ + E YLTD++ AR G + + + EV G N+R +L+ +
Sbjct: 182 DAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAAL 241
Query: 238 ENIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFF--------------- 282
R M +GVT++ P T ++ D I D VI P
Sbjct: 242 GAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPD 301
Query: 283 --------GCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCE 334
G G S+ ++ IG +GPF +R T + + ++G F E
Sbjct: 302 TTLTDVTVGEGASVVR-------THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVE 354
Query: 335 VKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSL 394
K ATI G+K+ HL+YVGD+ +G++ NIGA ++ NYDG +K++T I + GS++
Sbjct: 355 TKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMF 414
Query: 395 IAPITIGQGTYVASGSIITQDTPENSLVFARSRQ 428
+AP+T+G G Y +G++I +D P +L + Q
Sbjct: 415 VAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQ 448
>gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 481
Score = 286 bits (732), Expect = 1e-77
Identities = 150/446 (33%), Positives = 236/446 (52%), Gaps = 33/446 (7%)
Query: 8 IVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFP 67
++LAAG+G RMKS+ KVL +AG+PM++ ++ G + +V G+GAE++
Sbjct: 11 VILAAGQGTRMKSALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG 70
Query: 68 PTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM-DKIAQG 126
V + Q+ Q GT A L+ A+ G D++++YGD PL+ TL+ + D AQG
Sbjct: 71 S--GVAFARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQG 128
Query: 127 YSIAVVGFNADNPKGYGRLLI-KNNEIIAIREENDATDEERKIHYCNSGLMAIDGLYIMD 185
++ ++ + GYGR++ + + I E+ DATD E+ I NSG+ Y+ D
Sbjct: 129 SAMTILTGELPDATGYGRIVRGADGAVERIVEQKDATDAEKAIGEFNSGV------YVFD 182
Query: 186 -----WLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKE-QEVCGCNNRYELSLIEN 239
+I + + EYYLTD++ R G + + + + EV G N+R L+ +E
Sbjct: 183 ARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEA 242
Query: 240 IWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFF------GCGVSIENY-- 291
+ R M +GVT+ P T+ + + D IEP V GV+I Y
Sbjct: 243 TLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSV 302
Query: 292 ---------VQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKE 342
I+ S LEG +G + +GPFAR+R T + + V IGNF E K A +
Sbjct: 303 VTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDA 362
Query: 343 GSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQ 402
G K HL+Y+GD +G N+GAGTI N+DG +K+++ + FIGSN++LIAP +G
Sbjct: 363 GVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGD 422
Query: 403 GTYVASGSIITQDTPENSLVFARSRQ 428
++A+GS + D PE ++ AR +Q
Sbjct: 423 AAFIAAGSAVHDDVPEGAMAVARGKQ 448
>gnl|CDD|163332 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid
O-acetyltransferase NeuD family. These proteins contain
repeats of the bacterial transferase hexapeptide
(pfam00132), although often these do not register above
the trusted cutoff.
Length = 201
Score = 70.2 bits (173), Expect = 1e-12
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 25/122 (20%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVG-DSVVGKNV 361
IG+ T+I A I +VRIG+ I IN + V D V+G V
Sbjct: 100 ASIGEGTVIMAGA------VINPDVRIGDNV------I-----INTGAIVEHDCVIGDYV 142
Query: 362 NIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSL 421
+I G I E FIG+ +++I +TIG G V +G+++T+D P+ +
Sbjct: 143 HIAPGVTLSGG-------VVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGV 195
Query: 422 VF 423
V
Sbjct: 196 VV 197
Score = 45.6 bits (109), Expect = 2e-05
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 262 VFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLE-------GVHIGKKTIIGPF 314
+ +I PD I +V G +E+ I + ++ GV IG+ IG
Sbjct: 106 TVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAG 165
Query: 315 ARIRQETTIEKNVRIG 330
A I Q TI +G
Sbjct: 166 ATIIQGVTIGAGAIVG 181
>gnl|CDD|162250 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase,
long form. Alternate name: dTDP-D-glucose synthase.
Length = 353
Score = 67.0 bits (164), Expect = 8e-12
Identities = 97/375 (25%), Positives = 165/375 (44%), Gaps = 63/375 (16%)
Query: 7 AIVLAAGRGHRMKS---SSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYG-AEEIT 62
A++LAAG+G R++ + K L +A KP++ + +E +A AGI ++ +V+G EEI
Sbjct: 2 ALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIK 61
Query: 63 RI-----NFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLK 117
I F + Y +Q G AHAV TA+D + G DD ++ GD L+ +
Sbjct: 62 EIVGEGERF--GAKITYIVQGEPLGLAHAVYTARDFL--GDDDFVVYLGD-NLIQDGISR 116
Query: 118 KAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMA 177
+ Y ++ +P +G ++++ + I E+ K N +A
Sbjct: 117 FVKSFEEKDYDALILLTKVRDPTAFGVAVLEDGKRIL------KLVEKPKEPPSN---LA 167
Query: 178 IDGLYIM-DWLLQIKKN-KVS--QEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYE 233
+ GLY+ + + KN K S E +TD I+ I+ K +V G
Sbjct: 168 VVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWL---------IE-KGYKVGG------ 211
Query: 234 LSLIENIWQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTV---IEPHVFFGCGVSIEN 290
S + W+ + + ++ +I E + +Q I V G G I N
Sbjct: 212 -SKVTGWWKDTGKPEDLLDANRLILDEV-----EREVQGVDDESKIRGRVVVGEGAKIVN 265
Query: 291 YVQIRAFSYL-EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKI-NH 348
V IR + + E I + + IGP+ T+I + V I + EV+ + + + S I
Sbjct: 266 SV-IRGPAVIGEDCII-ENSYIGPY------TSIGEGVVIRD-AEVEHSIVLDESVIEGV 316
Query: 349 LSYVGDSVVGKNVNI 363
+ + DSV+GK V I
Sbjct: 317 QARIVDSVIGKKVRI 331
Score = 28.1 bits (63), Expect = 4.9
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 32/84 (38%)
Query: 339 TIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPI 398
+ EG+KI + G +V+G++ I EN++IG +S
Sbjct: 256 VVGEGAKIVNSVIRGPAVIGEDCII--------------------ENSYIGPYTS----- 290
Query: 399 TIGQGTYVASGSIITQDTPENSLV 422
IG+G + + E+S+V
Sbjct: 291 -IGEGVVIRDAEV------EHSIV 307
>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-acetyltransferase. Alternate name:
tetrahydrodipicolinate N-acetyltransferase. Note that
IUBMB lists this alternate name as the accepted name.
Unfortunately, the related succinyl transferase acting
on the same substrate (EC:2.3.1.117, TIGR00695) uses the
opposite standard. We have decided to give these two
enzymes names which more clearly indicated that they act
on the same substrate.
Length = 231
Score = 63.6 bits (155), Expect = 9e-11
Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 17/132 (12%)
Query: 311 IGPFARIRQETTIEKN--------VRIGNFCEVKKATIKEGSKINHLSYVGD-SVVGKNV 361
I P A IR + I N + IG A I EG+ I+ + +G + VGKNV
Sbjct: 89 IEPGAIIRDQVIIGDNAVIMMGAVINIG-------AEIGEGTMIDMNAVLGGRATVGKNV 141
Query: 362 NIGAGTITCNY-DGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS 420
+IGAG + + I +N IG+N+ ++ + +G+G VA+G+I+T+D P N+
Sbjct: 142 HIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNT 201
Query: 421 LVFARSRQIVKE 432
+V +++K+
Sbjct: 202 VVAGVPAKVIKQ 213
>gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase. This model describes LpxD, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species. This
protein represents the third step from
UDP-N-acetyl-D-glucosamine. The group added at this step
generally is 14:0(3-OH) (myristate) but may vary; in
Aquifex it appears to be 16:0(3-OH) (palmitate).
Length = 324
Score = 63.5 bits (155), Expect = 1e-10
Identities = 46/209 (22%), Positives = 65/209 (31%), Gaps = 53/209 (25%)
Query: 257 IAPETVFLSHDTIIQPDTV-IEPHVFFGCGVSIENYVQIRAFSYL-EGVHIGKKTIIGPF 314
I P V + D V I P+V G GV I V I + + V IG + I P
Sbjct: 94 IHPTAV--VDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPN 151
Query: 315 ARIRQETTIEKNVRI--------------------------------GNFCEV------- 335
I + + KNV I + E+
Sbjct: 152 VVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTID 211
Query: 336 ----KKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSN 391
I EG+KI++L + N IG I G T I N IG
Sbjct: 212 RGAFDDTIIGEGTKIDNLVQIA-----HNCRIGENCIIVAQVGIAG-STKIGRNVIIGGQ 265
Query: 392 SSLIAPITIGQGTYVASGSIITQDTPENS 420
+ + IG + + S +T+ P
Sbjct: 266 VGVAGHLEIGDNVTIGAKSGVTKSIPPPG 294
>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA;
Provisional.
Length = 292
Score = 57.0 bits (137), Expect = 1e-08
Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 48/245 (19%)
Query: 3 RKRLAIVLAAGRGHRM---KSSSSKVLQKIAGKPMISHVMETIAAAGIENVALV------ 53
+ R I+LA G G R+ + SK L I KPMI + + T+ AGI ++ ++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDT 61
Query: 54 ------LGYGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGD 107
LG G++ L+++Y +Q G A A + ++ I G DD ++ GD
Sbjct: 62 PRFQQLLGDGSQW--------GLNLQYKVQPSPDGLAQAFIIGEEFI--GGDDCALVLGD 111
Query: 108 VPLVSSHTLKKAMDKIAQGYSIAVV-GFNADNPKGYGRLLIKNNEIIAIREENDATDEER 166
+ H L K M+ S A V ++ ++P+ YG + N EE +
Sbjct: 112 -NIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQNGTAISLEEKPL---QP 167
Query: 167 KIHYCNSGLMAIDGLYIMD-WLLQIKKN---KVSQEYYLTDI----IEKARLD----GKS 214
K +Y A+ GLY D ++++ KN E +TDI +E+ RL G+
Sbjct: 168 KSNY------AVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRG 221
Query: 215 IASID 219
A +D
Sbjct: 222 YAWLD 226
>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 255
Score = 55.0 bits (133), Expect = 3e-08
Identities = 49/181 (27%), Positives = 70/181 (38%), Gaps = 38/181 (20%)
Query: 269 IIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKN-- 326
+I P VI+P G GV I + I A V IG T IGP A I T I KN
Sbjct: 1 MIHPTAVIDPSAKLGSGVEIGPFAVIGA-----NVEIGDGTWIGPHAVILGPTRIGKNNK 55
Query: 327 ----------------------VRIGNFCEVKK-ATIKEGSKINHLSYVGD-------SV 356
+ IG+ +++ TI G+K ++ +G+ S
Sbjct: 56 IHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSH 115
Query: 357 VGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDT 416
V + IG I N + T + + A I N + IG +A GS I++D
Sbjct: 116 VAHDCQIGNNVILVNGALLAGHVT-VGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDV 174
Query: 417 P 417
P
Sbjct: 175 P 175
>gnl|CDD|179158 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional.
Length = 343
Score = 52.8 bits (128), Expect = 2e-07
Identities = 48/223 (21%), Positives = 69/223 (30%), Gaps = 58/223 (26%)
Query: 244 RYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL-EG 302
+ S I P + + I I P+ G GV I + V I A + + +G
Sbjct: 90 LFDPPATPSPAAGIHP-SAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDG 148
Query: 303 VHIGKKTIIGPFARIRQETTIEKN-------------------------------VRIGN 331
V IG + I I V IG+
Sbjct: 149 VKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGD 208
Query: 332 FCEVKKAT-----------IKEGSKINHLSYVGDSV-VGKNVNIGAGTI---TCNYDGTH 376
E+ T I EG KI++L V + NV IG T G+
Sbjct: 209 DVEIGANTTIDRGALDDTVIGEGVKIDNL------VQIAHNVVIGRHTAIAAQVGIAGS- 261
Query: 377 KYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPEN 419
T I IG + + IG G + + S +T+ PE
Sbjct: 262 ---TKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEP 301
>gnl|CDD|180091 PRK05450, PRK05450, 3-deoxy-manno-octulosonate
cytidylyltransferase; Provisional.
Length = 245
Score = 50.9 bits (123), Expect = 7e-07
Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 34/122 (27%)
Query: 17 RMKSS--SSKVLQKIAGKPMISHVMETIAAAGIENVAL----------VLGYGAEEI-TR 63
R S+ K L I GKPMI V E + AG + V + V +G E + T
Sbjct: 10 RYASTRLPGKPLADIGGKPMIVRVYERASKAGADRVVVATDDERIADAVEAFGGEVVMTS 69
Query: 64 INFPPTLSVEYYIQDCQQGT---AHAVLTAQDAIKPGYDDVIIMY-GDVPLVSSHTLKKA 119
D GT A A + DD+++ GD PL+ + +
Sbjct: 70 -------------PDHPSGTDRIAEAA----AKLGLADDDIVVNVQGDEPLIPPEIIDQV 112
Query: 120 MD 121
+
Sbjct: 113 AE 114
>gnl|CDD|178905 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase; Reviewed.
Length = 227
Score = 49.4 bits (119), Expect = 2e-06
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 2 KRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAG-IENVALVL 54
AI+ AAG+G RM + K + GKP++ H +E A I+ + +V+
Sbjct: 1 MMMVYAIIPAAGKGSRMGADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVV 54
>gnl|CDD|129545 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase. Members of this protein family
are 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase, the IspD protein of the
deoxyxylulose pathway of IPP biosynthesis. In about
twenty percent of bacterial genomes, this protein occurs
as IspDF, a bifunctional fusion protein.
Length = 217
Score = 47.3 bits (113), Expect = 8e-06
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGYGAEEITRIN 65
A++ AAGRG R S K ++ G+P++ H ++ A I+ V +V+ +
Sbjct: 2 AVIPAAGRGTRFGSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVV----SPEDQEF 57
Query: 66 FPPTLSVEYYIQDCQQGT--AHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLK 117
F L + G +V A+K + V++ P V L
Sbjct: 58 FQKYLVARAVPKIVAGGDTRQDSVRNGLKALK-DAEWVLVHDAARPFVPKELLD 110
>gnl|CDD|130911 TIGR01852, lipid_A_lpxA,
acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase. This model describes LpxA, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species, but this
protein represents the first step (from
UDP-N-acetyl-D-glucosamine) and appears to be conserved
in function. Proteins from this family contain many
copies of the bacterial transferase hexapeptide repeat
(pfam00132).
Length = 254
Score = 46.9 bits (112), Expect = 9e-06
Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 63/193 (32%)
Query: 270 IQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKN--- 326
I P +IEP G V I + + GV IG + I TTI +
Sbjct: 1 IHPTAIIEPGAEIGENVEIGPFCIVGP-----GVKIGDGVELKSHVVILGHTTIGEGTRI 55
Query: 327 ---------------------VRIGNFCEVKK-ATIKEGSK------------------- 345
+ IG+ +++ TI G+
Sbjct: 56 FPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSH 115
Query: 346 INHLSYVGDSVV-GKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGT 404
I H VG+ V+ N + AG + + + A IG ++ + IG+
Sbjct: 116 IAHDCVVGNHVILANNATL-AGHVE------------VGDYAIIGGLVAVHQFVRIGRYA 162
Query: 405 YVASGSIITQDTP 417
+ S +++D P
Sbjct: 163 MIGGLSAVSKDVP 175
Score = 35.7 bits (83), Expect = 0.025
Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 47/128 (36%)
Query: 311 IGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITC 370
I P A I I +NV IG FC +VG V IG G
Sbjct: 1 IHPTAIIEPGAEIGENVEIGPFC----------------------IVGPGVKIGDGVE-- 36
Query: 371 NYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSII---TQD---TPENSLVFA 424
+ S+ ++ TIG+GT + G++I QD E + +
Sbjct: 37 -----------------LKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELII 79
Query: 425 RSRQIVKE 432
++E
Sbjct: 80 GDNNTIRE 87
>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY.
Members of this family are located next to other genes
organized into apparent operons for phenylacetic acid
degradation. PaaY is located near the end of these gene
clusters and often next to PaaX, a transcriptional
regulator.
Length = 192
Score = 46.0 bits (109), Expect = 2e-05
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 29/137 (21%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKIN-----HLSYVGDSVV 357
V +GK+ +GP A +R G+F + +KEG+ I H D+VV
Sbjct: 27 VILGKRCYVGPLASLR-----------GDFGRI---VLKEGANIQDNCVMHGFPGQDTVV 72
Query: 358 GKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQ--D 415
+N ++G G I + + NA +G N+ ++ IG+ + VA+ + + +
Sbjct: 73 EENGHVGHGAIL--------HGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAE 124
Query: 416 TPENSLVFARSRQIVKE 432
P LV ++++E
Sbjct: 125 MPAQYLVVGSPAKVIRE 141
>gnl|CDD|179994 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 262
Score = 44.3 bits (106), Expect = 6e-05
Identities = 48/195 (24%), Positives = 71/195 (36%), Gaps = 44/195 (22%)
Query: 249 MMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKK 308
I ++ P + + I P VI P+V G G I ++V I IGK
Sbjct: 3 AKIHPTAIVEPGAK-IGENVEIGPFCVIGPNVVIGDGTVIGSHVVI-----DGHTTIGKN 56
Query: 309 TIIGPFARI------------RQETTIEKNVRIGNFCEVKKATIKEGSKI----NHL--- 349
I PFA I I N I F + + T++ G N+L
Sbjct: 57 NRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMA 116
Query: 350 -SYVG-DSVVGKNVNIG-----AGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQ 402
+V D VVG +V + AG H + + A IG +++ + IG
Sbjct: 117 YVHVAHDCVVGNHVILANNATLAG---------H---VEVGDYAIIGGLTAVHQFVRIGA 164
Query: 403 GTYVASGSIITQDTP 417
V S ++QD P
Sbjct: 165 HAMVGGMSGVSQDVP 179
Score = 40.1 bits (95), Expect = 0.001
Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 44/112 (39%)
Query: 307 KKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAG 366
I P A + I +NV IG FC V+G NV IG G
Sbjct: 1 MMAKIHPTAIVEPGAKIGENVEIGPFC----------------------VIGPNVVIGDG 38
Query: 367 TITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSII---TQD 415
T+ IGS+ + TIG+ + + I QD
Sbjct: 39 TV-------------------IGSHVVIDGHTTIGKNNRIFPFASIGEDPQD 71
>gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate
cytidylyltransferase; Provisional.
Length = 238
Score = 44.2 bits (105), Expect = 7e-05
Identities = 34/131 (25%), Positives = 46/131 (35%), Gaps = 30/131 (22%)
Query: 17 RMKSSS--SKVLQKIAGKPMISHVME-TIAAAGIENVALVLGYGAEEITRINFPPTLSVE 73
R SS K L I GKPMI HV E AAG+E V Y A + RI
Sbjct: 10 RYGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEV-----YVATDDQRI--------- 55
Query: 74 YYIQDCQQGTAHAVLTAQD----------AIKPGYDDVIIMY-GDVPLVSSHTLKKAMDK 122
+ V+T+ D + D+ I GD P++ + +
Sbjct: 56 --EDAVEAFGGKVVMTSDDHLSGTDRLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQP 113
Query: 123 IAQGYSIAVVG 133
+ SI V
Sbjct: 114 MLDDPSINVAT 124
>gnl|CDD|178976 PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis
protein MobA; Reviewed.
Length = 193
Score = 44.0 bits (105), Expect = 8e-05
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIA 43
++LA GR RM K LQ++ GKP+I HV+E +A
Sbjct: 6 GVILAGGRSRRM-GGVDKGLQELNGKPLIQHVIERLA 41
>gnl|CDD|130240 TIGR01172, cysE, serine O-acetyltransferase. Cysteine
biosynthesis.
Length = 162
Score = 43.9 bits (104), Expect = 8e-05
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 355 SVVGKNVNIGAGTITCNYDGTHKYKTH--INENAFIGSNSSLIAPITIGQGTYVASGSII 412
+V+G +V I G +T G K K H + E IG+ + ++ I +G+ + + S++
Sbjct: 88 AVIGDDVTIYHG-VTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVV 146
Query: 413 TQDTPENSLV 422
+D P + V
Sbjct: 147 LKDVPPGATV 156
>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short
form. This model describes a tightly conserved but
broadly distributed subfamily (here designated as short
form) of known and putative bacterial
glucose-1-phosphate thymidylyltransferases. It is well
characterized in several species as the first of four
enzymes involved in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.
Length = 286
Score = 43.5 bits (103), Expect = 1e-04
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 27/152 (17%)
Query: 8 IVLAAGRGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVALV----------- 53
I+LA G G R+ + SK L I KPMI + + T+ AGI ++ ++
Sbjct: 3 IILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQ 62
Query: 54 -LGYGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVS 112
LG G++ +++ Y +Q G A A + +D I G D ++ GD +
Sbjct: 63 LLGDGSQW--------GVNLSYAVQPSPDGLAQAFIIGEDFI--GGDPSALVLGD-NIFY 111
Query: 113 SHTLKKAMDKIAQGYSIAVV-GFNADNPKGYG 143
H L + + A S A V + +P+ YG
Sbjct: 112 GHDLSDLLKRAAARESGATVFAYQVSDPERYG 143
>gnl|CDD|162203 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase.
Built to distinquish between the highly similar genes
galU and galF.
Length = 260
Score = 43.4 bits (103), Expect = 1e-04
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 35/159 (22%)
Query: 5 RLAIVLAAGRGHRM---KSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGA--- 58
R A++ AAG G R + K + I KP+I +V+E AGIE++ +V G G
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAI 60
Query: 59 -----------------------EEITRINFPPTLSVEYYI-QDCQQGTAHAVLTAQDAI 94
+E+ I+ T+ +Y+ Q Q+G HAVL A+ +
Sbjct: 61 EDHFDTSYELEHQLEKRGKEELLKEVRSISPLATI---FYVRQKEQKGLGHAVLCAEPFV 117
Query: 95 KPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVG 133
G + ++ GD +VS K M + + Y +++
Sbjct: 118 --GDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIA 154
>gnl|CDD|178340 PLN02739, PLN02739, serine acetyltransferase.
Length = 355
Score = 43.1 bits (101), Expect = 1e-04
Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 338 ATIKEGSKINHLS--YVGDS-VVGKNVNIGAGTITCNYDGTHKYKTH--INENAFIGSNS 392
A I +G ++H + +G++ V+G V+I G +T G H I + A +G+
Sbjct: 212 ARIGKGILLDHGTGVVIGETAVIGDRVSILHG-VTLGGTGKETGDRHPKIGDGALLGACV 270
Query: 393 SLIAPITIGQGTYVASGSIITQDTPENSLVFARSRQIVK----EDGALSMR 439
+++ I+IG G VA+GS++ +D P +S+V +++ +D +L+M
Sbjct: 271 TILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGFVDEQDPSLTME 321
>gnl|CDD|182500 PRK10502, PRK10502, putative acyl transferase; Provisional.
Length = 182
Score = 41.9 bits (99), Expect = 3e-04
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 295 RAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGD 354
R F G IGK +I P RI T + IG++ A I + + +L G+
Sbjct: 48 RLF----GAKIGKGVVIRPSVRI----TYPWKLTIGDY-----AWIGDDVWLYNL---GE 91
Query: 355 SVVGKNVNIGAGTITCNYDGTHKYKTH----------INENAFIGSNSSLIAP-ITIGQG 403
+G + I + C G+H Y I E ++ ++ +AP +TIG G
Sbjct: 92 ITIGAHCVISQKSYLCT--GSHDYSDPHFDLNTAPIVIGEGCWLAADVF-VAPGVTIGSG 148
Query: 404 TYVASGSIITQDTPENSL 421
V + S + + P N++
Sbjct: 149 AVVGARSSVFKSLPANTI 166
>gnl|CDD|163213 TIGR03310, matur_ygfJ, molybdenum hydroxylase accessory protein,
YgfJ family. Members of this protein family are
probable accessory proteins for the biosynthesis of
enzymes related to xanthine dehydrogenase. Comparative
genomics suggests a role in the maturation of
selenium-dependent molybdenum hydroxylases, although a
tenuous alternative hypothesis is a role for this
protein (with a requirement for SelD, the selenium
donor protein in the selenocysteine and selenouridine
biosynthesis pathways) metabolizing a
selenium-containing substrate such as selenate.
Length = 188
Score = 40.4 bits (95), Expect = 0.001
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60
AI+LAAG RM +K+L GK ++ HV++ + V LVLG+ A+E
Sbjct: 2 AIILAAGLSSRM--GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADE 53
>gnl|CDD|183330 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional.
Length = 272
Score = 39.4 bits (93), Expect = 0.002
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 26/102 (25%)
Query: 357 VGKNVNIGAGT-ITCNYDGT----HKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSI 411
+GKNV++ G I G I +N FIG+ S ++ + + +G+ + G
Sbjct: 153 IGKNVHLSGGVGI----GGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVF 208
Query: 412 ITQDT---------------PENSLVFARSRQIVKEDGALSM 438
+ Q T P S+V S +DG S+
Sbjct: 209 LGQSTKIYDRETGEVHYGRVPAGSVVVPGSL--PSKDGGYSL 248
>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate
cytidylyltransferase. Members of this family are the
enzyme glucose-1-phosphate cytidylyltransferase, also
called CDP-glucose pyrophosphorylase, the product of
the rfbF gene.
Length = 254
Score = 39.0 bits (91), Expect = 0.003
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 7 AIVLAAGRGHRMKSSSS---KVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEI 61
A++LA G G R+ + K + +I GKP++ H+M+ + GI + + GY I
Sbjct: 2 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVI 59
>gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase
hexapeptide repeat family. This family of proteins
contains copies of the Bacterial transferase hexapeptide
repeat family (pfam00132) and is only found in operons
encoding the phosphonate C-P lyase system (GenProp0232).
Many C-P lyase operons, however, lack a homolog of this
protein.
Length = 204
Score = 38.6 bits (90), Expect = 0.003
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 36/139 (25%)
Query: 320 ETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGD------SVVGK------NVNIGAGT 367
T ++G + E+ + T + SYV + +GK V I A
Sbjct: 13 PTAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATN 72
Query: 368 ITCNYDGTHKY------------------------KTHINENAFIGSNSSLIAPITIGQG 403
H + + I + +IG + ++ +TIG G
Sbjct: 73 HPMERPTLHHFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNG 132
Query: 404 TYVASGSIITQDTPENSLV 422
+A+G+++T+D ++V
Sbjct: 133 AVIAAGAVVTKDVAPYTIV 151
>gnl|CDD|130038 TIGR00965, dapD, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-succinyltransferase. The closely related TabB protein
of Pseudomonas syringae (pv. tabaci) appears to act in
the biosynthesis of tabtoxin rather than lysine. The
trusted cutoff is set high enough to exclude this gene.
Sequences below trusted also include a version of this
enzyme which apparently utilize acetate rather than
succinate (EC: 2.3.1.89).
Length = 269
Score = 38.3 bits (89), Expect = 0.004
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 313 PFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSV-VGKNVNIGAGT-ITC 370
P A +RQ I KNV + A + EG+ ++ + VG +GKNV++ G I
Sbjct: 105 PGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGG 164
Query: 371 NYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDT 416
+ T I +N FIG+ S ++ + + +G+ ++ G I Q T
Sbjct: 165 VLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQST 210
>gnl|CDD|182235 PRK10092, PRK10092, maltose O-acetyltransferase; Provisional.
Length = 183
Score = 38.3 bits (89), Expect = 0.004
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 382 INENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLVFARSRQIVK 431
I N +IG + + +TIG VASG+++T+D P+N +V +I+K
Sbjct: 132 IGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIK 181
>gnl|CDD|162965 TIGR02665, molyb_mobA, molybdopterin-guanine dinucleotide
biosynthesis protein A, proteobacterial. In many
molybdopterin-containing enzymes, including nitrate
reductase and dimethylsulfoxide reductase, the cofactor
is molybdopterin-guanine dinucleotide. The family
described here contains MobA, molybdopterin-guanine
dinucleotide biosynthesis protein A, from the
Proteobacteria only. MobA can reconstitute
molybdopterin-guanine dinucleotide biosynthesis without
the product of the neighboring gene MobB. The probable
MobA proteins of other lineages differ sufficiently
that they are not included in scope of this family.
Length = 186
Score = 37.6 bits (88), Expect = 0.007
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVME 40
++LA GR RM K L ++ GKP+I HV+
Sbjct: 3 GVILAGGRARRM-GGRDKGLVELGGKPLIEHVLA 35
>gnl|CDD|177933 PLN02296, PLN02296, carbonate dehydratase.
Length = 269
Score = 36.6 bits (85), Expect = 0.014
Identities = 23/116 (19%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVN 362
V +G+ + I +R + ++ +G+ ++ ++ +K N V +++G NV
Sbjct: 71 VQVGRGSSIWYGCVLRGDVN---SISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVT 127
Query: 363 IGAGTI--TCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDT 416
IG + C + + AF+G ++L+ + + + VA+G+++ Q+T
Sbjct: 128 IGHSAVLHGCT----------VEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNT 173
Score = 27.8 bits (62), Expect = 5.9
Identities = 8/37 (21%), Positives = 23/37 (62%)
Query: 379 KTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQD 415
++++AF+ ++S+I + +G+G+ + G ++ D
Sbjct: 52 APVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGD 88
>gnl|CDD|177989 PLN02357, PLN02357, serine acetyltransferase.
Length = 360
Score = 36.4 bits (84), Expect = 0.015
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 338 ATIKEGSKINHLS--YVGDS-VVGKNVNIGAGTITCNYDGTHKYKTH--INENAFIGSNS 392
A I +G ++H + +G++ VVG NV+I +T G H I + IG+ +
Sbjct: 233 AKIGQGILLDHATGVVIGETAVVGNNVSILHN-VTLGGTGKQSGDRHPKIGDGVLIGAGT 291
Query: 393 SLIAPITIGQGTYVASGSIITQDTP 417
++ ITIG+G + +GS++ +D P
Sbjct: 292 CILGNITIGEGAKIGAGSVVLKDVP 316
>gnl|CDD|181813 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase protein; Provisional.
Length = 378
Score = 36.4 bits (85), Expect = 0.017
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAG-IENVALV 53
+++AAGR R + K +I GKP+ HV+E +++A + + +V
Sbjct: 8 LVIVAAGRSTRFSAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVV 55
>gnl|CDD|137467 PRK09677, PRK09677, putative lipopolysaccharide biosynthesis
O-acetyl transferase WbbJ; Provisional.
Length = 192
Score = 36.4 bits (84), Expect = 0.017
Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 35/159 (22%)
Query: 273 DTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNF 332
D +FFG V + +YV I + +E + IG+ T+I I
Sbjct: 59 DAFGRGKLFFGDNVQVNDYVHI---ACIESITIGRDTLIASKVFITDH------------ 103
Query: 333 CEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNS 392
NH S+ + + + + + I + +IG N
Sbjct: 104 --------------NHGSF------KHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENV 143
Query: 393 SLIAPITIGQGTYVASGSIITQDTPENSLVFARSRQIVK 431
+++ ++IG G V + S++T+ PEN+++ +I+K
Sbjct: 144 TILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIK 182
>gnl|CDD|182295 PRK10191, PRK10191, putative acyl transferase; Provisional.
Length = 146
Score = 35.6 bits (82), Expect = 0.025
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 356 VVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQD 415
V G + I G N + HI +G+N ++ ITIG V +GS++
Sbjct: 69 VAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS 128
Query: 416 TPENSLV 422
P+N+LV
Sbjct: 129 VPDNALV 135
Score = 30.2 bits (68), Expect = 1.0
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNF------CEVKKATIKEGSKINHLSYVGDSV 356
+H G +I + TI V IGN C ++ G+ + +GD
Sbjct: 56 IHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANV---IILGDIT 112
Query: 357 VGKNVNIGAGTI 368
+G NV +GAG++
Sbjct: 113 IGNNVTVGAGSV 124
>gnl|CDD|129546 TIGR00454, TIGR00454, conserved hypothetical protein TIGR00454.
At this time this gene appears to be present only in
Archea.
Length = 183
Score = 35.7 bits (82), Expect = 0.027
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 6 LAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALV 53
A+++A G+G R+ K L ++ G+ +I HV+ + + + N+ +
Sbjct: 2 DALIMAGGKGTRL-GGVEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIA 48
>gnl|CDD|172962 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobA/MobB;
Provisional.
Length = 366
Score = 35.5 bits (82), Expect = 0.029
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETI 42
++LA G RM + K L + GKP+I V++ +
Sbjct: 8 GVILAGGLSRRM-NGRDKALILLGGKPLIERVVDRL 42
>gnl|CDD|129558 TIGR00466, kdsB, 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Length = 238
Score = 35.3 bits (81), Expect = 0.029
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 17 RMKSS--SSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSVEY 74
R+ SS K L+ I GKPMI HV E +G + ++ E + + + V
Sbjct: 7 RLASSRLPGKPLEDIFGKPMIVHVAENANESGADRC--IVATDDESVAQTCQKFGIEVCM 64
Query: 75 YIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQ 125
+ GT + + ++ + GD P + +++ D +A
Sbjct: 65 TSKHHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLAT 115
>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 429
Score = 35.2 bits (82), Expect = 0.030
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 268 TIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNV 327
+ I+ IE + G E+ + +G IG I++ I+KN
Sbjct: 331 SRIESGCTIEDTLVMGADF-YESSEEREELRKEGKPPLG----IGEGTTIKR-AIIDKNA 384
Query: 328 RIGNFCE-VKKATIKEGSKINHLSYV--GDSVVGKNVNIGAGTI 368
RIGN V K ++E + + Y+ G VV KN I GT+
Sbjct: 385 RIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTV 428
>gnl|CDD|163336 TIGR03584, PseF, pseudaminic acid CMP-transferase. The sequences
in this family include the pfam02348
(cytidyltransferase) domain and are homologous to the
NeuA protein responsible for the transfer of CMP to
neuraminic acid. According to, this gene is responsible
for the transfer of CMP to the structurally related
sugar, pseudaminic acid which is observed as a component
of sugar modifications of flagellin in Campylobacter
species. This gene is commonly observed in apparent
operons with other genes responsible for the
biosynthesis of pseudaminic acid and as a component of
flagellar and exopolysaccharide biosynthesis loci.
Length = 222
Score = 34.2 bits (79), Expect = 0.075
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 6 LAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGI-----------ENVALVL 54
+AI+ A G R+ K ++ GKPMI++ +E +G+ E +
Sbjct: 1 IAIIPARGGSKRIPR---KNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEEIAEVAK 57
Query: 55 GYGAEEITRINF--PPTLSVEYYIQDCQQGTAHAVLTAQDAIK--PGYDDVIIMYGDVPL 110
YGA + F P L+ ++ GTA V A + +K YD +Y P
Sbjct: 58 SYGAS----VPFLRPKELADDF------TGTAPVVKHAIEELKLQKQYDHACCIYATAPF 107
Query: 111 VSSHTLKKAMDKIAQG---YSIAVVGF 134
+ + LK+A + + Q + +V F
Sbjct: 108 LQAKILKEAFELLKQPNAHFVFSVTSF 134
>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional.
Length = 297
Score = 34.1 bits (78), Expect = 0.078
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 7 AIVLAAGRGHRMKSSSS---KVLQKIAGKPMISHVMETIAAAGIENVALV 53
A++ AG G M ++ K + I KPMI ++++ I AAGI+ + LV
Sbjct: 6 AVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLV 55
>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase,
non-catalytic GalF subunit. GalF is a non-catalytic
subunit of the UTP-glucose pyrophosphorylase modulating
the enzyme activity to increase the formation of
UDP-glucose.
Length = 297
Score = 33.9 bits (77), Expect = 0.100
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 7 AIVLAAGRGHRMKSSSS---KVLQKIAGKPMISHVMETIAAAGIENVALV 53
A++ AG G M ++ K + I KPMI ++++ I AAGI+ + LV
Sbjct: 6 AVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLV 55
>gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase.
Length = 294
Score = 33.5 bits (76), Expect = 0.10
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 338 ATIKEGSKINHLS--YVGDS-VVGKNVNIGAGTITCNYDGTHKYKTH--INENAFIGSNS 392
A I +G +H + +G++ V+G NV+I +T G H I + IG+ +
Sbjct: 167 AKIGKGILFDHATGVVIGETAVIGNNVSI-LHHVTLGGTGKACGDRHPKIGDGVLIGAGA 225
Query: 393 SLIAPITIGQGTYVASGSIITQDTP 417
+++ + IG+G + +GS++ D P
Sbjct: 226 TILGNVKIGEGAKIGAGSVVLIDVP 250
>gnl|CDD|181930 PRK09527, lacA, galactoside O-acetyltransferase; Reviewed.
Length = 203
Score = 33.4 bits (76), Expect = 0.11
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 382 INENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPEN 419
I N +IGS+ + +TIG + + +GS++T+D P N
Sbjct: 134 IGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPN 171
>gnl|CDD|167418 PRK02726, PRK02726, molybdopterin-guanine dinucleotide
biosynthesis protein A; Provisional.
Length = 200
Score = 33.5 bits (77), Expect = 0.13
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALV 53
A++LA G+ RM K L G P++ V IAAA + V ++
Sbjct: 10 ALILAGGKSSRM--GQDKALLPWQGVPLLQRVAR-IAAACADEVYII 53
>gnl|CDD|163320 TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase CofC.
Members of this protein family are the CofC enzyme of
coenzyme F420 biosynthesis.
Length = 195
Score = 32.6 bits (75), Expect = 0.18
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 34 MISHVMETIAAAGIENVALVL--GYGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQ 91
M+ V+ + AG V +V E + P ++D G +A+ A
Sbjct: 32 MLRDVITALRGAGAGAVLVVSPDPALLEAARNLGAPV-------LRDPGPGLNNALNAAL 84
Query: 92 DAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQG 126
+ V+I+ D+PL++ LK+ + +G
Sbjct: 85 AEAREPGGAVLILMADLPLLTPRELKRLLAAATEG 119
>gnl|CDD|162696 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is also
called ADP-glucose pyrophosphorylase. The plant form is
an alpha2,beta2 heterodimer, allosterically regulated in
plants. Both subunits are homologous and included in
this model. In bacteria, both homomeric forms of GlgC
and more active heterodimers of GlgC and GlgD have been
described. This model describes the GlgC subunit only.
This enzyme appears in variants of glycogen synthesis
pathways that use ADP-glucose, rather than UDP-glucose
as in animals.
Length = 361
Score = 32.2 bits (74), Expect = 0.29
Identities = 83/426 (19%), Positives = 138/426 (32%), Gaps = 132/426 (30%)
Query: 7 AIVLAAGRGHRMKSSSSKVLQKIAGKP---------MISHVMETIAAAGIENVALVLGYG 57
A+VLA GRG R+ L K KP +I + +GI + ++ Y
Sbjct: 1 AMVLAGGRGSRLS-----PLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYK 55
Query: 58 AEEITR-----------IN-----FPPTLSVEYYIQDCQQGTAHAV---LTAQDAIKPGY 98
+ + R I+ P D QGTA AV L + P Y
Sbjct: 56 SHSLNRHIQRGWDFDGFIDGFVTLLPAQQRESG--TDWYQGTADAVYQNLDLIEDYDPEY 113
Query: 99 DDVIIMYGD-------VPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLI-KNN 150
V+I+ GD ++ H A +IA + +G + + ++
Sbjct: 114 --VLILSGDHIYKMDYEKMLDYHIESGA------DVTIACIPVPRKEASRFGVMQVDEDG 165
Query: 151 EIIAIREENDATDEERKIHYCNSGLMAIDGLYIMDW------LLQIKKNKVSQEYYLTDI 204
I+ E+ I +A G+YI D L + + S + DI
Sbjct: 166 RIVDFEEK---PANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDI 222
Query: 205 IEKARLDGKSIASIDVKEQEVCGCNNRYELS-------LIENIWQSR------------Y 245
I +A +G A Y S I++ W++ Y
Sbjct: 223 IPRALEEGSVQA---------------YLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLY 267
Query: 246 RRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGC---GVSIENYVQIRAFSYLEG 302
R+ I P F+ D + V E GC G ++ +
Sbjct: 268 DRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE-----GCIISGATVSH------------ 310
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVN 362
+++G VRIG+ V+ + I I + + ++++ KNV
Sbjct: 311 ------SVLGI------------RVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVR 352
Query: 363 IGAGTI 368
IG G +
Sbjct: 353 IGEGVV 358
Score = 30.3 bits (69), Expect = 0.94
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 329 IGNFCEVKKATIK-----EGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHIN 383
+ C + AT+ +I S V DSV+ +V IG G I+
Sbjct: 297 VSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIG--------RGAVIRNAIID 348
Query: 384 ENAFIGSN 391
+N IG
Sbjct: 349 KNVRIGEG 356
>gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase
subunit GalU; Provisional.
Length = 302
Score = 31.0 bits (70), Expect = 0.60
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 32/138 (23%)
Query: 2 KRKRLAIVLAAGRGHRMKSSSS---KVLQKIAGKPMISHVMETIAAAGIENVALVLGYGA 58
+ + A++ AG G RM ++ K + + KP+I +V+ AAGI + LV
Sbjct: 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK 65
Query: 59 --------------------------EEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQD 92
+E+ I PP +++ Q +G HAVL A
Sbjct: 66 NSIENHFDTSFELEAMLEKRVKRQLLDEVQSI-CPPHVTIMQVRQGLAKGLGHAVLCAHP 124
Query: 93 AIKPGYDDVIIMYGDVPL 110
+ G + V ++ DV L
Sbjct: 125 VV--GDEPVAVILPDVIL 140
>gnl|CDD|150500 pfam09837, DUF2064, Uncharacterized protein conserved in bacteria
(DUF2064). This domain, found in various prokaryotic
proteins, has no known function.
Length = 121
Score = 31.0 bits (71), Expect = 0.65
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 22/77 (28%)
Query: 80 QQGT------AHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQ-------- 125
Q G A A + A GY V+++ D P +++ L +A + + +
Sbjct: 40 QGGGDLGERMARA---FRQAFAAGYRPVLLIGTDCPDLTAELLAQAFEALERHDAVLGPA 96
Query: 126 ---GYSIAVVGFNADNP 139
GY ++G P
Sbjct: 97 EDGGY--YLLGLRRPTP 111
>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.
Length = 196
Score = 29.8 bits (67), Expect = 1.4
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 303 VHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVN 362
V +G IGP A +R + G A +++G I H D++VG+N +
Sbjct: 29 VIVGAGVYIGPLASLRGD--------YGRLIVQAGANLQDGC-IMHGYCDTDTIVGENGH 79
Query: 363 IGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIIT---QDTPEN 419
IG G I + I +A +G NS ++ IG+ + VA+ S + Q
Sbjct: 80 IGHGAIL--------HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQ 131
Query: 420 SLVFARSRQI 429
L+ +R +
Sbjct: 132 LLMGTPARAV 141
>gnl|CDD|177884 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase.
Length = 436
Score = 29.8 bits (68), Expect = 1.6
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 268 TIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNV 327
+ I IE V G E +I + V IG IG +IR I+KN
Sbjct: 338 SRIGEGVEIEDTVMMGAD-YYETEEEIASLLAEGKVPIG----IGENTKIR-NAIIDKNA 391
Query: 328 RIGNFCE-VKKATIKEGSKINHLSYV--GDSVVGKNVNIGAGTI 368
RIG + K ++E + Y+ G V+ KN I GT+
Sbjct: 392 RIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTV 435
>gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional.
Length = 445
Score = 29.6 bits (67), Expect = 1.9
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 131 VVGFNADNPKGYGRLLIKNNEIIAIREENDATDEER----------------KIHYCNSG 174
+V NA G +LI+++ I A+ + D D + IH C +
Sbjct: 10 IVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQGHIHLCQTL 69
Query: 175 LMAI-DGLYIMDWL 187
I D L ++DWL
Sbjct: 70 FRGIADDLELLDWL 83
>gnl|CDD|178777 PLN03239, PLN03239, histone acetyltransferase; Provisional.
Length = 351
Score = 29.2 bits (65), Expect = 1.9
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 126 GYSIA-VVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDGLYIM 184
GY++A ++ F A KGYGR LI + ++ +EE + E+ + G I+
Sbjct: 213 GYNLACILTFPAHQRKGYGRFLIAFSYELSKKEEKVGSPEKPMSDLGQQAYIPYWGSTIV 272
Query: 185 DWLLQIKKNKVSQEYYLTDIIEKARLDGKSI 215
D+LL N S + DI +K + + I
Sbjct: 273 DFLLNHSGNDSSLS--IMDIAKKTSIMAEDI 301
>gnl|CDD|179140 PRK00844, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 407
Score = 29.4 bits (67), Expect = 2.0
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 326 NVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTI 368
NV + + EV+ + + +G +I + V +++ KNV + G
Sbjct: 337 NVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGAT 379
>gnl|CDD|178494 PLN02906, PLN02906, xanthine dehydrogenase.
Length = 1319
Score = 29.3 bits (66), Expect = 2.3
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 27/92 (29%)
Query: 47 IENVALVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYG 106
I+ +A+ L EEI +NF SV +Y Q Q T + +D+
Sbjct: 923 IQRIAVELNKSPEEIREMNFQGEGSVTHYGQVLQHCTLPQL----------WDE------ 966
Query: 107 DVPLVSSHTLKKAMDKIAQGYSIAVVGFNADN 138
L S K +++ + FNA N
Sbjct: 967 ---LKVSCDFLKRREEVDE--------FNAKN 987
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 28.7 bits (65), Expect = 3.6
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 27/92 (29%)
Query: 301 EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN 360
+GV +G+ +++ +++ I +IG +++A ++G+N
Sbjct: 313 QGVQVGEGSVV-------KDSVIMPGAKIGENVVIERA-----------------IIGEN 348
Query: 361 VNIGAGTITCNYDGTHKYKTHINENAFIGSNS 392
IG G I G + T I EN IG +
Sbjct: 349 AVIGDGVII---GGGKEVITVIGENEVIGVGT 377
>gnl|CDD|182987 PRK11132, cysE, serine acetyltransferase; Provisional.
Length = 273
Score = 28.1 bits (63), Expect = 4.9
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 382 INENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLVFARSRQIV 430
I E IG+ + ++ I +G+G + +GS++ Q P ++ +IV
Sbjct: 196 IREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIV 244
>gnl|CDD|177785 PLN00191, PLN00191, enolase.
Length = 457
Score = 28.1 bits (63), Expect = 5.1
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 201 LTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENIWQSRYRRQMMISGVTMIA 258
L + IEKA GK +DV E + +Y+L + + SG +I
Sbjct: 249 LKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDL----DFKEENNDGSNKKSGDELID 302
>gnl|CDD|162818 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal
domain of unknown function. This domain is found
exclusively in non-ribosomal peptide synthetases and
always as the final domain in the polypeptide. This
domain is roughly 700 amino acids in size and is found
in polypeptides roughly twice that size.
Length = 695
Score = 27.8 bits (62), Expect = 5.7
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 343 GSKINHLSYVGDSVVGKN--VNIGAGTITCNYDGTHKYKTH----------INENAFIGS 390
G+KI +G + IGAGTI Y+ + +AFIG+
Sbjct: 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGT 171
Query: 391 NSSLIAPITIGQGTYVASGSIITQD 415
S+L +IG G + GS +
Sbjct: 172 RSTLDIDTSIGDGAQLGHGSALQGG 196
>gnl|CDD|179099 PRK00725, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 425
Score = 27.9 bits (63), Expect = 6.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 3 RKRLAIVLAAGRGHRMK 19
R LA++LA GRG R+K
Sbjct: 14 RDTLALILAGGRGSRLK 30
>gnl|CDD|184017 PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase; Provisional.
Length = 230
Score = 27.5 bits (61), Expect = 6.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 8 IVLAAGRGHRMKSSSSKVLQKIAGKPMISHVME 40
I LAAG+G RM + +K+ + G+P+ H +
Sbjct: 6 IFLAAGQGKRMNAPLNKMWLDLVGEPIFIHALR 38
>gnl|CDD|178329 PLN02728, PLN02728, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase.
Length = 252
Score = 27.4 bits (61), Expect = 6.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 8 IVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIA 43
I+LA G G RM ++ K + G+P+ + + T A
Sbjct: 28 ILLAGGVGKRMGANMPKQYLPLLGQPIALYSLYTFA 63
>gnl|CDD|181428 PRK08446, PRK08446, coproporphyrinogen III oxidase; Provisional.
Length = 350
Score = 27.2 bits (61), Expect = 8.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 24 KVLQKIAGKPMISHVMETIAAAGIENVALVLGYG 57
K L +I + I +E AG EN+++ L Y
Sbjct: 125 KFLGRIHSQKQIIKAIENAKKAGFENISIDLIYD 158
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,187,040
Number of extensions: 473226
Number of successful extensions: 1156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 924
Number of HSP's successfully gapped: 98
Length of query: 442
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 346
Effective length of database: 3,920,105
Effective search space: 1356356330
Effective search space used: 1356356330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)