BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus Liberibacter asiaticus str. psy62] (442 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 442 Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/442 (100%), Positives = 442/442 (100%) Query: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE Sbjct: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60 Query: 61 ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM 120 ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM Sbjct: 61 ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM 120 Query: 121 DKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDG 180 DKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDG Sbjct: 121 DKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDG 180 Query: 181 LYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENI 240 LYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENI Sbjct: 181 LYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENI 240 Query: 241 WQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL 300 WQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL Sbjct: 241 WQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL 300 Query: 301 EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN 360 EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN Sbjct: 301 EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN 360 Query: 361 VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS 420 VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS Sbjct: 361 VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS 420 Query: 421 LVFARSRQIVKEDGALSMRKKK 442 LVFARSRQIVKEDGALSMRKKK Sbjct: 421 LVFARSRQIVKEDGALSMRKKK 442 >gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 347 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 66/224 (29%) Query: 259 PETVFLSHDTIIQPDTV----------IEPHVFFGCGVSIENYVQIRAFSYL-EGVHIGK 307 PE F +I+ P + I P F G V IE+ V I + + GV IG+ Sbjct: 92 PEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGR 151 Query: 308 KTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEG--------------------SKIN 347 KT +GP + I I +N IG + + I S I+ Sbjct: 152 KTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIH 211 Query: 348 HLSYVG----------------------DSVVGKN------------VNIGAGTITCNYD 373 + ++G D+++G+N V+IG G I + Sbjct: 212 KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQV 271 Query: 374 GTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTP 417 G T+I +N IG + + IG +AS S + +D P Sbjct: 272 GIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP 314 >gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 292 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 44/199 (22%) Query: 7 AIVLAAGRGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVALV---------- 53 IVLA G G R++ + SK + I KPMI + + T+ AGI + ++ Sbjct: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62 Query: 54 --LGYGAEEITRINF-----PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYG 106 LG G + + ++ P L+ Y + G + +VL D + G D Sbjct: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD------- 115 Query: 107 DVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEER 166 S KA A+ S VVG + NP+ YG ++ + N A E Sbjct: 116 -----ISDIFHKAR---ARRNSATVVGCHVQNPQRYG--------VVEVDSSNQAISIEE 159 Query: 167 KIHYCNSGLMAIDGLYIMD 185 K + S A+ G+Y D Sbjct: 160 KPNNPKSSF-AVTGIYFYD 177 >gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 33.1 bits (74), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 23/136 (16%) Query: 301 EGVHIGKKTIIGPFARIRQETTIEKNV------------RIGNFCEVKKATIKEG-SKIN 347 EG IG ++IGPF + E I V +IG+F +V + G ++ Sbjct: 18 EGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSK 77 Query: 348 HLSYVG-DSVVGKNVNIGAGTITCNYDGTHKY--KTHINENAFIGSNSSLIAPITIGQGT 404 + ++VG + +VGK I G +T N GT +Y KT + +N F +NS + +G G Sbjct: 78 YHNFVGTELLVGKKCVIREG-VTIN-RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGI 135 Query: 405 YVA-----SGSIITQD 415 ++ +G +I D Sbjct: 136 VLSNNVMIAGHVIVDD 151 Score = 31.6 bits (70), Expect = 0.030, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 305 IGKKTIIGPFARIRQETTIEKNVRIGNFCEV-KKATIKEGSK-INHLSYVGDSVVGKNVN 362 +G II P A + + I N IG FC V + I G + I+H G + +G Sbjct: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63 Query: 363 IGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV 422 + + D KY + +G + +TI +GT G I D N+ Sbjct: 64 VFPMAVLGG-DTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGD---NNFF 119 Query: 423 FARS 426 A S Sbjct: 120 LANS 123 >gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 299 Score = 30.4 bits (67), Expect = 0.053, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQK----IAGKPMISHVMETIAAAGIENVALVLGY 56 +K+ R A+ AG G R SKV+ K I +P+I +V+E AG+ + V G Sbjct: 4 LKKVRKAVFPIAGLGMRF-FPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR 62 Query: 57 G 57 G Sbjct: 63 G 63 >gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 285 Score = 29.6 bits (65), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 338 ATIKEGSKINHLSYVGDSV-VGKNVNIGAGTITCN-YDGTHKYKTHINENAFIGSNSSLI 395 A I EGS I+ S VG +GKNV+I G + T I +N FIG+ S ++ Sbjct: 138 AYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIV 197 Query: 396 APITIGQGTYVASGSIITQDT 416 I +G+ + G I + T Sbjct: 198 EGCIIREGSVLGMGVFIGKST 218 >gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 8/24 (33%), Positives = 16/24 (66%) Query: 230 NRYELSLIENIWQSRYRRQMMISG 253 N + +I+NIWQ+ +R ++ +G Sbjct: 77 NDFSYRIIKNIWQTDFRNELRENG 100 >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 15/29 (51%) Query: 273 DTVIEPHVFFGCGVSIENYVQIRAFSYLE 301 D V E H CG++ E Y I+A +E Sbjct: 845 DEVSEVHAGQDCGMAFEKYDNIQAGDMIE 873 >gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62] Length = 196 Score = 23.9 bits (50), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%) Query: 19 KSSSSKVLQK--IAGKPMISHVM-ETIAAAGIEN-------VALVLGYGAEEITRINFPP 68 K S++L+K IA + H+ +T A EN + +LG+ EE+ I Sbjct: 68 KELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHR 127 Query: 69 TLSVEYYIQ 77 LS+ YY Q Sbjct: 128 LLSLAYYAQ 136 >gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter asiaticus str. psy62] Length = 150 Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 98 YDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIRE 157 YD V + Y PLVS +K + +A Y + +PK R+ + EI IR Sbjct: 61 YDAVNMGYQLAPLVSDRRMKCNVKPVANLYQYRYLS----DPKNVQRIGVIAQEISKIRP 116 Query: 158 E 158 + Sbjct: 117 D 117 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.135 0.385 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 282,864 Number of Sequences: 1233 Number of extensions: 12124 Number of successful extensions: 55 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 16 length of query: 442 length of database: 328,796 effective HSP length: 77 effective length of query: 365 effective length of database: 233,855 effective search space: 85357075 effective search space used: 85357075 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)