BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine
pyrophosphorylase protein [Candidatus Liberibacter asiaticus str.
psy62]
         (442 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 442

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/442 (100%), Positives = 442/442 (100%)

Query: 1   MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60
           MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE
Sbjct: 1   MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60

Query: 61  ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM 120
           ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM
Sbjct: 61  ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM 120

Query: 121 DKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDG 180
           DKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDG
Sbjct: 121 DKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDG 180

Query: 181 LYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENI 240
           LYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENI
Sbjct: 181 LYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENI 240

Query: 241 WQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL 300
           WQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL
Sbjct: 241 WQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL 300

Query: 301 EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN 360
           EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN
Sbjct: 301 EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN 360

Query: 361 VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS 420
           VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS
Sbjct: 361 VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS 420

Query: 421 LVFARSRQIVKEDGALSMRKKK 442
           LVFARSRQIVKEDGALSMRKKK
Sbjct: 421 LVFARSRQIVKEDGALSMRKKK 442


>gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 347

 Score = 42.7 bits (99), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 66/224 (29%)

Query: 259 PETVFLSHDTIIQPDTV----------IEPHVFFGCGVSIENYVQIRAFSYL-EGVHIGK 307
           PE  F    +I+ P  +          I P  F G  V IE+ V I   + +  GV IG+
Sbjct: 92  PEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGR 151

Query: 308 KTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEG--------------------SKIN 347
           KT +GP + I     I +N  IG    +  + I                       S I+
Sbjct: 152 KTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIH 211

Query: 348 HLSYVG----------------------DSVVGKN------------VNIGAGTITCNYD 373
            + ++G                      D+++G+N            V+IG G I  +  
Sbjct: 212 KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQV 271

Query: 374 GTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTP 417
           G     T+I +N  IG    +   + IG    +AS S + +D P
Sbjct: 272 GIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP 314


>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 292

 Score = 39.3 bits (90), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 44/199 (22%)

Query: 7   AIVLAAGRGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVALV---------- 53
            IVLA G G R++  +   SK +  I  KPMI + + T+  AGI  + ++          
Sbjct: 3   GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62

Query: 54  --LGYGAEEITRINF-----PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYG 106
             LG G +   + ++     P  L+  Y +     G + +VL   D +  G D       
Sbjct: 63  EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD------- 115

Query: 107 DVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEER 166
                 S    KA    A+  S  VVG +  NP+ YG        ++ +   N A   E 
Sbjct: 116 -----ISDIFHKAR---ARRNSATVVGCHVQNPQRYG--------VVEVDSSNQAISIEE 159

Query: 167 KIHYCNSGLMAIDGLYIMD 185
           K +   S   A+ G+Y  D
Sbjct: 160 KPNNPKSSF-AVTGIYFYD 177


>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 271

 Score = 33.1 bits (74), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 23/136 (16%)

Query: 301 EGVHIGKKTIIGPFARIRQETTIEKNV------------RIGNFCEVKKATIKEG-SKIN 347
           EG  IG  ++IGPF  +  E  I   V            +IG+F +V    +  G ++  
Sbjct: 18  EGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSK 77

Query: 348 HLSYVG-DSVVGKNVNIGAGTITCNYDGTHKY--KTHINENAFIGSNSSLIAPITIGQGT 404
           + ++VG + +VGK   I  G +T N  GT +Y  KT + +N F  +NS +     +G G 
Sbjct: 78  YHNFVGTELLVGKKCVIREG-VTIN-RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGI 135

Query: 405 YVA-----SGSIITQD 415
            ++     +G +I  D
Sbjct: 136 VLSNNVMIAGHVIVDD 151



 Score = 31.6 bits (70), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 305 IGKKTIIGPFARIRQETTIEKNVRIGNFCEV-KKATIKEGSK-INHLSYVGDSVVGKNVN 362
           +G   II P A + +   I  N  IG FC V  +  I  G + I+H    G + +G    
Sbjct: 4   MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63

Query: 363 IGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV 422
           +    +    D   KY   +     +G    +   +TI +GT    G  I  D   N+  
Sbjct: 64  VFPMAVLGG-DTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGD---NNFF 119

Query: 423 FARS 426
            A S
Sbjct: 120 LANS 123


>gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 299

 Score = 30.4 bits (67), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 1  MKRKRLAIVLAAGRGHRMKSSSSKVLQK----IAGKPMISHVMETIAAAGIENVALVLGY 56
          +K+ R A+   AG G R     SKV+ K    I  +P+I +V+E    AG+ +   V G 
Sbjct: 4  LKKVRKAVFPIAGLGMRF-FPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR 62

Query: 57 G 57
          G
Sbjct: 63 G 63


>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 285

 Score = 29.6 bits (65), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 338 ATIKEGSKINHLSYVGDSV-VGKNVNIGAGTITCN-YDGTHKYKTHINENAFIGSNSSLI 395
           A I EGS I+  S VG    +GKNV+I  G       +      T I +N FIG+ S ++
Sbjct: 138 AYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIV 197

Query: 396 APITIGQGTYVASGSIITQDT 416
               I +G+ +  G  I + T
Sbjct: 198 EGCIIREGSVLGMGVFIGKST 218


>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 371

 Score = 25.4 bits (54), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 230 NRYELSLIENIWQSRYRRQMMISG 253
           N +   +I+NIWQ+ +R ++  +G
Sbjct: 77  NDFSYRIIKNIWQTDFRNELRENG 100


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 24.3 bits (51), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 273 DTVIEPHVFFGCGVSIENYVQIRAFSYLE 301
           D V E H    CG++ E Y  I+A   +E
Sbjct: 845 DEVSEVHAGQDCGMAFEKYDNIQAGDMIE 873


>gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 196

 Score = 23.9 bits (50), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 19  KSSSSKVLQK--IAGKPMISHVM-ETIAAAGIEN-------VALVLGYGAEEITRINFPP 68
           K   S++L+K  IA    + H+  +T   A  EN       +  +LG+  EE+  I    
Sbjct: 68  KELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHR 127

Query: 69  TLSVEYYIQ 77
            LS+ YY Q
Sbjct: 128 LLSLAYYAQ 136


>gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 150

 Score = 23.9 bits (50), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 98  YDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIRE 157
           YD V + Y   PLVS   +K  +  +A  Y    +     +PK   R+ +   EI  IR 
Sbjct: 61  YDAVNMGYQLAPLVSDRRMKCNVKPVANLYQYRYLS----DPKNVQRIGVIAQEISKIRP 116

Query: 158 E 158
           +
Sbjct: 117 D 117


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,864
Number of Sequences: 1233
Number of extensions: 12124
Number of successful extensions: 55
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 16
length of query: 442
length of database: 328,796
effective HSP length: 77
effective length of query: 365
effective length of database: 233,855
effective search space: 85357075
effective search space used: 85357075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)