HHsearch alignment for GI: 254780943 and conserved domain: COG0067
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism].
Probab=99.86 E-value=3.2e-20 Score=159.70 Aligned_cols=170 Identities=22% Similarity=0.288 Sum_probs=129.0
Q ss_pred EEECCCCHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCEEEEECCEECCHHHHHHHHHHCCCEEEE
Q ss_conf 9945865899887---5210347865446510454388997002675023889999768150689998999978988972
Q gi|254780943|r 44 CVRAQGKLSELEK---ELNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLT 120 (608)
Q Consensus 44 ~~K~~g~i~~l~~---~~~~~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~~~~vvHNG~I~N~~elr~~l~~~g~~f~s 120 (608)
T Consensus 178 VYKG~~~p~~V~~~y~dl~~~~~~s~~~l~HsRFSTNT~p~W~~AHPfr~l----vHNGEInT~~gN~nwm~ar~~~~~s 253 (371)
T COG0067 178 VYKGVGLPEDVAEFYLDLDDERYKSAIALVHTRFSTNTFPSWPLAHPFRLL----VHNGEINTYGGNRNWLEARGYKFES 253 (371)
T ss_pred EEECCCCHHHHHHHHHHCCCHHHCEEEEEEEECCCCCCCCCCCCCCCCEEE----EECCEECCCCCHHHHHHHHHCCCCC
T ss_conf 993056899997777652442212468999800678889988767866533----3355021541179999985240104
Q ss_pred CCCHHHHHHHHHHHHHHCC---HHHHHHHHH---------HHHHHHHHHHHHHCCCCCCEEEEEECCC---CEEEECCCC
Q ss_conf 4761567888763432001---026779999---------9988751222010046872389997499---607760896
Q gi|254780943|r 121 ETDTEVIACLLEKFIKNGS---SKKETMQKL---------MQCLTGSYSIAVIFEDDPHSIIVARKGP---PLIIGHGEG 185 (608)
Q Consensus 121 ~tDsEvi~~li~~~~~~~~---~~~~ai~~~---------~~~l~G~ya~~il~~~~p~~i~~ar~gs---PL~iG~~~~ 185 (608)
T Consensus 254 ~~~~e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G~~~~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa~~ 333 (371)
T COG0067 254 PTDGEVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADI 333 (371)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHEECCCCCCCCEEEEEEHHHHCCCCCCCCCCE
T ss_conf 65288899987876024774111467898877518571457771696540337779844079886064477875077621
Q ss_pred CEEEECCCCCCCCCC----CEEEECCCCEEEEEECC
Q ss_conf 136613762011111----03798276518897305
Q gi|254780943|r 186 EMFVGSDVTALTLLT----DKVTYMEDGDWAIIRNS 217 (608)
Q Consensus 186 ~~~vaSd~~al~~~t----~~~~~L~dgei~~i~~~ 217 (608)
T Consensus 334 ~f~dgse~gA~ldrngLrp~Ry~~t~d~~vv~~se~ 369 (371)
T COG0067 334 VFTDGSEEGAILDRNGLRPARYWITKDGEVVVASEA 369 (371)
T ss_pred EEEECCEEEEEECCCCCCCCEEEEECCCEEEEEEEC
T ss_conf 687420554540237987542899549989998722