HHsearch alignment for GI: 254780943 and conserved domain: COG1737
>COG1737 RpiR Transcriptional regulators [Transcription].
Probab=98.51 E-value=1.5e-05 Score=57.54 Aligned_cols=137 Identities=26% Similarity=0.269 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC---HHHHCCCCEEEEEECCCHHHH
Q ss_conf 77446779874203614552136644999999999999742211442324314463---788079871899944801468
Q gi|254780943|r 450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGP---IALITEGTFVIAIAPYDRFFQ 526 (608)
Q Consensus 450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP---~ali~~~~~vi~i~~~~~~~~ 526 (608)
T Consensus 117 ~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~-~~~~~~d~---~~~~~~~~~~~~~Dv~i~iS~sG~t~e 192 (281)
T COG1737 117 EEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGL-NVVALSDT---HGQLMQLALLTPGDVVIAISFSGYTRE 192 (281)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC-CEEEECCC---HHHHHHHHHCCCCCEEEEEECCCCCHH
T ss_conf 99999999999706957999648359999999999998199-66996684---179999983899988999848999689
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC--HHH----HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999999827980899956532100013466279868878--156----658999999999999999838
Q gi|254780943|r 527 KTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG--EIV----SPIVFSLPIQMIAYCTAVLIG 592 (608)
Q Consensus 527 k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~--~~l----~pl~~~iplQllAy~~A~~~G 592 (608)
T Consensus 193 -~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad-~~L~~~~~~~~~~~~~~~s~~a~l~l~d~L~~~~~~~~~ 262 (281)
T COG1737 193 -IVEAAELAKERGAKVIAITDSADSPLAKLAD-IVLLVPVAEESFFRSPISSRIAQLALIDALITAVAQRRG 262 (281)
T ss_pred -HHHHHHHHHHCCCEEEEEECCCCCCHHHHCC-EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999999997799299983999993666547-788712676322255607889999999999999998746