HHsearch alignment for GI: 254780943 and conserved domain: PRK11302
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional.
Probab=99.60 E-value=2.1e-14 Score=119.17 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=88.7
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHHH---CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 23565510352036543079999999986256673143042010---012334455505775267881899999999863
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFR---YRDFVYSSKWASLFISQSGETADTLASLRYMRT 362 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf~---y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~ 362 (608)
T Consensus 124 li~~A~~I~i~G~G~S~~vA~~~~~kl~r-~g~~~~~~--~d~~~~~~~a~~~~~~Dvvi~iS~sG~t~e~i~~~~~Ak~ 200 (284)
T PRK11302 124 LLTQAKKISFFGLGASAAVAHDAQNKFFR-FNVPVVYF--DDIVMQRMSCMNSSDGDVVVLISHTGRTKSLVELAQLARE 200 (284)
T ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHHH-CCCCEEEC--CCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99718958999648509999999999984-39814642--8789999999719998889997379998799999999998
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0244246511787631000241013674200--110007888999999999999977
Q gi|254780943|r 363 QGLTIGSLVNVLESTIARESDFIFPIKAGPE--IGVASTKAFTCQLLVLVIMAIYAG 417 (608)
Q Consensus 363 ~g~~tiaItN~~~S~la~~aD~~i~~~aG~E--i~VasTKsftaql~~l~llal~l~ 417 (608)
T Consensus 201 ~ga~vIaIT~-~~SpLa~~AD~~L~~~~~e~~~~~~-~~~sriaql~viD~L~~~~~ 255 (284)
T PRK11302 201 NGATVIGITA-AGSPLAREATLALTLDVPEDTDIYM-PMVSRIAQLTVIDVLATGFT 255 (284)
T ss_pred CCCCEEEECC-CCCHHHHHCCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 7995899779-9981488689889846776540110-46999999999999999999