HHsearch alignment for GI: 254780943 and conserved domain: PRK11302
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional.
Probab=98.30 E-value=8e-05 Score=52.56 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHH
Q ss_conf 77446779874203614552136644999999999999742211442324314463788079871899944801468899
Q gi|254780943|r 450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTL 529 (608)
Q Consensus 450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~ 529 (608)
T Consensus 115 ~~~l~~av~li~~A~~I~i~G~G~S~~vA~~~~~kl~r~g-~~~~~~~d~~~~~~~a~~~~~~Dvvi~iS~sG~t~e-~i 192 (284)
T PRK11302 115 PSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFN-VPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTKS-LV 192 (284)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCC-CCEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCHH-HH
T ss_conf 9999999999971895899964850999999999998439-814642878999999971999888999737999879-99
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECC
Q ss_conf 999999827980899956532100013466279868
Q gi|254780943|r 530 SNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLP 565 (608)
Q Consensus 530 s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP 565 (608)
T Consensus 193 ~~~~~Ak~~ga~vIaIT~~-~SpLa~~A-D~~L~~~ 226 (284)
T PRK11302 193 ELAQLARENGATVIGITAA-GSPLAREA-TLALTLD 226 (284)
T ss_pred HHHHHHHHCCCCEEEECCC-CCHHHHHC-CEEEEEC
T ss_conf 9999999879958997799-98148868-9889846