HHsearch alignment for GI: 254780943 and conserved domain: PRK11337

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional.
Probab=98.22  E-value=6.9e-05  Score=53.02  Aligned_cols=115  Identities=16%  Similarity=0.202  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHH
Q ss_conf             77446779874203614552136644999999999999742211442324314463788079871899944801468899
Q gi|254780943|r  450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTL  529 (608)
Q Consensus       450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~  529 (608)
T Consensus       128 ~~~i~~av~li~~A~~I~i~G~G~S~~vA~~~~~kl~rlG-~~~~~~~d~~~~~~~a~~l~~~Dv~i~iS~sG~t~e-~i  205 (293)
T PRK11337        128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIG-VRCQAYPDAHIMMMSASLLQEGDVVLVVSHSGRTSD-VK  205 (293)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCHH-HH
T ss_conf             9999999999982797089985726999999999999859-804764777899999971899988999818999889-99


Q ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf             99999982798089995653210001346627986887
Q gi|254780943|r  530 SNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM  567 (608)
Q Consensus       530 s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~  567 (608)
T Consensus       206 ~~~~~Ak~~Ga~vI~IT~~~~SpLa~~a-D~vL~~~~~  242 (293)
T PRK11337        206 AAVELAKQNGAKIICITHSYHSPIAKLA-DYIICSPAP  242 (293)
T ss_pred             HHHHHHHHCCCEEEEECCCCCCHHHHHC-CEEEECCCC
T ss_conf             9999999879949997699998468958-998864887