HHsearch alignment for GI: 254780943 and conserved domain: PRK11337
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional.
Probab=98.22 E-value=6.9e-05 Score=53.02 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHH
Q ss_conf 77446779874203614552136644999999999999742211442324314463788079871899944801468899
Q gi|254780943|r 450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTL 529 (608)
Q Consensus 450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~ 529 (608)
T Consensus 128 ~~~i~~av~li~~A~~I~i~G~G~S~~vA~~~~~kl~rlG-~~~~~~~d~~~~~~~a~~l~~~Dv~i~iS~sG~t~e-~i 205 (293)
T PRK11337 128 VDEIHRAARFFYQARQRDLYGAGGSNAICADVQHKFLRIG-VRCQAYPDAHIMMMSASLLQEGDVVLVVSHSGRTSD-VK 205 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCHH-HH
T ss_conf 9999999999982797089985726999999999999859-804764777899999971899988999818999889-99
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf 99999982798089995653210001346627986887
Q gi|254780943|r 530 SNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM 567 (608)
Q Consensus 530 s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~ 567 (608)
T Consensus 206 ~~~~~Ak~~Ga~vI~IT~~~~SpLa~~a-D~vL~~~~~ 242 (293)
T PRK11337 206 AAVELAKQNGAKIICITHSYHSPIAKLA-DYIICSPAP 242 (293)
T ss_pred HHHHHHHHCCCEEEEECCCCCCHHHHHC-CEEEECCCC
T ss_conf 9999999879949997699998468958-998864887