HHsearch alignment for GI: 254780943 and conserved domain: PRK11557
>PRK11557 putative DNA-binding transcriptional regulator; Provisional.
Probab=98.11 E-value=0.00016 Score=50.50 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCH---HHHCCCCEEEEEECCCHHHH
Q ss_conf 774467798742036145521366449999999999997422114423243144637---88079871899944801468
Q gi|254780943|r 450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPI---ALITEGTFVIAIAPYDRFFQ 526 (608)
Q Consensus 450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~---ali~~~~~vi~i~~~~~~~~ 526 (608)
T Consensus 119 ~~~l~~av~~i~~A~~I~i~G~G~S~~vA~~~~~kl~rig-~~~~~~~d~---~~~~~~~~~l~~~Dv~I~iS~sG~t~~ 194 (282)
T PRK11557 119 EEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIG-INAVAERDM---HALLATVQALSPDDLLLAISYSGERRE 194 (282)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHC-CCEEECCCH---HHHHHHHHHCCCCCEEEEEECCCCCHH
T ss_conf 9999999999964895899970436999999999999809-963740886---899999981899998999859999789
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf 89999999982798089995653210001346627986887
Q gi|254780943|r 527 KTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM 567 (608)
Q Consensus 527 k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~ 567 (608)
T Consensus 195 -~~~~~~~Ak~~Ga~iIaIT~~~~spLa~~aD-~~L~~~~~ 233 (282)
T PRK11557 195 -LNLAADEALRVGGKVLAITGFTPNALQQRAS-HCLYTIAE 233 (282)
T ss_pred -HHHHHHHHHHCCCEEEEECCCCCCCHHHHCC-EEEEECCC
T ss_conf -9999999998799399972989981588699-99984785