HHsearch alignment for GI: 254780943 and conserved domain: PRK11557

>PRK11557 putative DNA-binding transcriptional regulator; Provisional.
Probab=98.11  E-value=0.00016  Score=50.50  Aligned_cols=112  Identities=18%  Similarity=0.150  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCH---HHHCCCCEEEEEECCCHHHH
Q ss_conf             774467798742036145521366449999999999997422114423243144637---88079871899944801468
Q gi|254780943|r  450 YSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPI---ALITEGTFVIAIAPYDRFFQ  526 (608)
Q Consensus       450 ~~~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~---ali~~~~~vi~i~~~~~~~~  526 (608)
T Consensus       119 ~~~l~~av~~i~~A~~I~i~G~G~S~~vA~~~~~kl~rig-~~~~~~~d~---~~~~~~~~~l~~~Dv~I~iS~sG~t~~  194 (282)
T PRK11557        119 EEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIG-INAVAERDM---HALLATVQALSPDDLLLAISYSGERRE  194 (282)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHC-CCEEECCCH---HHHHHHHHHCCCCCEEEEEECCCCCHH
T ss_conf             9999999999964895899970436999999999999809-963740886---899999981899998999859999789


Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCC
Q ss_conf             89999999982798089995653210001346627986887
Q gi|254780943|r  527 KTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSM  567 (608)
Q Consensus       527 k~~s~~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~  567 (608)
T Consensus       195 -~~~~~~~Ak~~Ga~iIaIT~~~~spLa~~aD-~~L~~~~~  233 (282)
T PRK11557        195 -LNLAADEALRVGGKVLAITGFTPNALQQRAS-HCLYTIAE  233 (282)
T ss_pred             -HHHHHHHHHHCCCEEEEECCCCCCCHHHHCC-EEEEECCC
T ss_conf             -9999999998799399972989981588699-99984785