HHsearch alignment for GI: 254780943 and conserved domain: PTZ00254
>PTZ00254 40S ribosomal protein SA; Provisional.
Probab=94.42 E-value=0.38 Score=27.01 Aligned_cols=123 Identities=10% Similarity=0.081 Sum_probs=69.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--EEEECCHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 565510352036543079999999986256673--1430420100-1233445550577526788189999999986302
Q gi|254780943|r 288 ANISGLLVSSCGTSYLAGLVGKFWFERLARLKV--EIDVSSEFRY-RDFVYSSKWASLFISQSGETADTLASLRYMRTQG 364 (608)
Q Consensus 288 ~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v--~v~~asEf~y-~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g 364 (608)
T Consensus 69 ~~~~~Il~V~tr~--~~q~aV~kfA-~~tG~~~i~~Rw~pGtlTN~i~~~f~eP~lliV~DP~~d~----~AV~EA~~~n 141 (242)
T PTZ00254 69 ENPADVVVVSSRP--YGQRAILKFS-QYTGASFIAGRFTPGTFTNQIQKKFQEPRLLIVTDPRTDH----QAIREASYVN 141 (242)
T ss_pred CCCCCEEEEECCH--HHHHHHHHHH-HHHCCCEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCH----HHHHHHHHCC
T ss_conf 4799779998388--9879999999-9979942405127866468766524688889996675440----8999999859
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 4424651178763100024101367420011000788899999999999997762120015776
Q gi|254780943|r 365 LTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQE 428 (608)
Q Consensus 365 ~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~llal~l~~~~g~i~~~~~ 428 (608)
T Consensus 142 IPvIal~DTds-~p-~~VD~~IP~Nd---------ds~~SI~Li~~lLArevl~~rG~i~r~~~ 194 (242)
T PTZ00254 142 IPVIALCDTDA-PL-EYVDIAIPCNN---------RGKKSIAMMYWLLAREVLRLRGTIPRSEP 194 (242)
T ss_pred CCEEEEECCCC-CC-CCCCEEEECCC---------CCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 98898616999-95-32656765688---------30768999999999999983688788898