HHsearch alignment for GI: 254780943 and conserved domain: TIGR00441
>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=98.58 E-value=6.2e-08 Score=74.19 Aligned_cols=131 Identities=23% Similarity=0.297 Sum_probs=88.8
Q ss_pred HHHHHCHHHHHHHH--HCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCC------HHHHHHHHHHHHCCCCCEE---
Q ss_conf 99741789999987--157476645211110000235655103520365430------7999999998625667314---
Q gi|254780943|r 254 KEIYEQPEAISRVL--SHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYL------AGLVGKFWFERLARLKVEI--- 322 (608)
Q Consensus 254 kEI~EQP~~l~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~------Aal~~~~~~e~~~~i~v~v--- 322 (608)
T Consensus 3 ~~l~~~~~~l~~~~~De~~~~Ai~~aa--~ll~~~l~~GgK~L~CGNGgSaadAqHFAaEl~GRf~~eR-~glPAIAL~t 79 (186)
T TIGR00441 3 KELTEAAEALEKSLKDEALIEAIQRAA--LLLVQSLKNGGKILICGNGGSAADAQHFAAELVGRFKLER-PGLPAIALNT 79 (186)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCC-CCCCHHHHHH
T ss_conf 678999999999873045088999999--9999999808908985685043358889998716400026-7764677762
Q ss_pred ------EECCHHHC-------CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---CCCC
Q ss_conf ------30420100-------1233445550577526788189999999986302442465117876310002---4101
Q gi|254780943|r 323 ------DVSSEFRY-------RDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARES---DFIF 386 (608)
Q Consensus 323 ------~~asEf~y-------~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~a---D~~i 386 (608)
T Consensus 80 D~S~Ltai~NDygyd~vF~RqVEAlG~~GDVL~GiSTSGNS~NvlkA~~~Ak~~gm~~i~L~G~dGGk~~~l~GPqD~~l 159 (186)
T TIGR00441 80 DISILTAIANDYGYDEVFSRQVEALGQEGDVLLGISTSGNSKNVLKAIEAAKDKGMKTIALTGKDGGKLAGLAGPQDVEL 159 (186)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 23532320011025678777766328898688874247670889999998845796699972178631133578886056
Q ss_pred C
Q ss_conf 3
Q gi|254780943|r 387 P 387 (608)
Q Consensus 387 ~ 387 (608)
T Consensus 160 ~ 160 (186)
T TIGR00441 160 R 160 (186)
T ss_pred E
T ss_conf 7