HHsearch alignment for GI: 254780943 and conserved domain: TIGR00441

>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=98.58  E-value=6.2e-08  Score=74.19  Aligned_cols=131  Identities=23%  Similarity=0.297  Sum_probs=88.8

Q ss_pred             HHHHHCHHHHHHHH--HCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCC------HHHHHHHHHHHHCCCCCEE---
Q ss_conf             99741789999987--157476645211110000235655103520365430------7999999998625667314---
Q gi|254780943|r  254 KEIYEQPEAISRVL--SHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYL------AGLVGKFWFERLARLKVEI---  322 (608)
Q Consensus       254 kEI~EQP~~l~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~------Aal~~~~~~e~~~~i~v~v---  322 (608)
T Consensus         3 ~~l~~~~~~l~~~~~De~~~~Ai~~aa--~ll~~~l~~GgK~L~CGNGgSaadAqHFAaEl~GRf~~eR-~glPAIAL~t   79 (186)
T TIGR00441         3 KELTEAAEALEKSLKDEALIEAIQRAA--LLLVQSLKNGGKILICGNGGSAADAQHFAAELVGRFKLER-PGLPAIALNT   79 (186)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCC-CCCCHHHHHH
T ss_conf             678999999999873045088999999--9999999808908985685043358889998716400026-7764677762


Q ss_pred             ------EECCHHHC-------CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---CCCC
Q ss_conf             ------30420100-------1233445550577526788189999999986302442465117876310002---4101
Q gi|254780943|r  323 ------DVSSEFRY-------RDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARES---DFIF  386 (608)
Q Consensus       323 ------~~asEf~y-------~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~a---D~~i  386 (608)
T Consensus        80 D~S~Ltai~NDygyd~vF~RqVEAlG~~GDVL~GiSTSGNS~NvlkA~~~Ak~~gm~~i~L~G~dGGk~~~l~GPqD~~l  159 (186)
T TIGR00441        80 DISILTAIANDYGYDEVFSRQVEALGQEGDVLLGISTSGNSKNVLKAIEAAKDKGMKTIALTGKDGGKLAGLAGPQDVEL  159 (186)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf             23532320011025678777766328898688874247670889999998845796699972178631133578886056


Q ss_pred             C
Q ss_conf             3
Q gi|254780943|r  387 P  387 (608)
Q Consensus       387 ~  387 (608)
T Consensus       160 ~  160 (186)
T TIGR00441       160 R  160 (186)
T ss_pred             E
T ss_conf             7