HHsearch alignment for GI: 254780943 and conserved domain: TIGR02815
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family; InterPro: IPR014180 Some members of this protein family are found in genic regions associated with N-acetyl-galactosamine and galactosamine utilisation and are suggested to be isomerases..
Probab=100.00 E-value=2.1e-37 Score=279.21 Aligned_cols=334 Identities=18% Similarity=0.252 Sum_probs=241.7
Q ss_pred HHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCH
Q ss_conf 999999741789999987157476645211110000235--655103520365430799999999862566731430420
Q gi|254780943|r 250 HFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFA--NISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSE 327 (608)
Q Consensus 250 hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asE 327 (608)
T Consensus 3 ~hTa~EI~qQP~lWR~~~~i-~q~~~~a~~aFL~PLLa~Pe~~LRIvLTGAGTSAF~G~~l~P~L~~~~G~~V~A~pTTD 81 (374)
T TIGR02815 3 VHTAREIEQQPALWRKLAEI-IQAERPALEAFLEPLLARPEEDLRIVLTGAGTSAFIGDALAPWLAKHLGLRVEAVPTTD 81 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 31278876407999999998-88899998887677760856477589856775477999999999984098158852377
Q ss_pred HHCCCC-CC--CCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCC-----CCCCCCCCC-CCCC
Q ss_conf 100123-34--4555057752678818999999998630--24424651178763100024-----101367420-0110
Q gi|254780943|r 328 FRYRDF-VY--SSKWASLFISQSGETADTLASLRYMRTQ--GLTIGSLVNVLESTIARESD-----FIFPIKAGP-EIGV 396 (608)
Q Consensus 328 f~y~~~-~~--~~~tlvI~iSQSGeT~dti~Al~~ak~~--g~~tiaItN~~~S~la~~aD-----~~i~~~aG~-Ei~V 396 (608)
T Consensus 82 LV~nP~qyL~p~~PTLLvSfaRSGNSPESVAAV~LAdQ~l~ecyHL~lTCN~~G~L~r~A~~~~~~~~LLMP~~snD~sF 161 (374)
T TIGR02815 82 LVSNPAQYLDPDRPTLLVSFARSGNSPESVAAVELADQLLPECYHLVLTCNEEGALARNAVNRSNSFALLMPEESNDRSF 161 (374)
T ss_pred CCCCHHHHCCCCCCHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf 77881551464554120221125887657999988742156542032223800056798724896389858743478640
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 00788899999999999997762120015776322799987599999999976774467798742036145521366449
Q gi|254780943|r 397 ASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYP 476 (608)
Q Consensus 397 asTKsftaql~~l~llal~l~~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~~i~~~a~~~~~~~~~~~lG~G~~y~ 476 (608)
T Consensus 162 AMTSSFscM~la~l~~l---g------p~~~~~~~~~~~A~~a~~~~~~-~~~~~~~~~l~~--~~~~R~~~LGSGgl~G 229 (374)
T TIGR02815 162 AMTSSFSCMMLAALAVL---G------PKTLESKEEERFAKAAECIVKE-EQWDEAAKALAA--APFERIVYLGSGGLQG 229 (374)
T ss_pred HHHHHHHHHHHHHHHHH---C------CCCCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHC--CCCCEEEEECCCHHHH
T ss_conf 02335899999999862---5------5662114699999999888651-114256778641--8763289868851368
Q ss_pred HHHHHHHHHHHHHH--HHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHH-HHHHHHHHHHHCC--CEEEEEECCCCC
Q ss_conf 99999999999742--211442324314463788079871899944801468-8999999998279--808999565321
Q gi|254780943|r 477 LALEGALKIKEISY--LHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQ-KTLSNIQEIVTRG--GRVIFITDEEGL 551 (608)
Q Consensus 477 ~A~EgALKlkE~sy--ihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~-k~~s~~~Ei~arg--~~vi~I~~~~~~ 551 (608)
T Consensus 230 lA~EsALK~LELTAGkv~a~~DSslGFRHGPK~~~~~~tlvVv~~S~DpYTRqYDLDLl~ELRrDn~A~~vvA~~a~~~~ 309 (374)
T TIGR02815 230 LARESALKVLELTAGKVMAVYDSSLGFRHGPKSVVDDETLVVVYVSSDPYTRQYDLDLLAELRRDNQALRVVAISAESDE 309 (374)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEECCEEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCHH
T ss_conf 99887677664333727888866888405885136086279998526898650047999997048962568886437512
Q ss_pred CCCCCCCCCEEECCCC---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 0001346627986887---81566589999999999999998387798897
Q gi|254780943|r 552 KRQDFPSIETIVLPSM---GEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPR 599 (608)
Q Consensus 552 ~~~~~~~~~~i~iP~~---~~~l~pl~~~iplQllAy~~A~~~G~dpD~PR 599 (608)
T Consensus 310 ~~~~g---~~~~lp~~~~~~D~~L~FPy~~faQ~~Af~~SlalG~tPDNPc 357 (374)
T TIGR02815 310 LVAEG---DAFLLPDLDEVEDVELAFPYLIFAQTLAFEKSLALGNTPDNPC 357 (374)
T ss_pred HHCCC---CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 21378---7365689887324999989999999999999997158886678