HHsearch alignment for GI: 254780943 and conserved domain: TIGR03104
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.97 E-value=3.1e-30 Score=229.25 Aligned_cols=179 Identities=26% Similarity=0.435 Sum_probs=143.8
Q ss_pred CCEEEEEECCC---HHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 96699997250---127999999997631587434899995892999945865899887521034786544651045438
Q gi|254780943|r 1 MCGIVGIVGRE---SVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIAHTRWATH 77 (608)
Q Consensus 1 MCGI~G~~~~~---~~~~~l~~~L~~Le~RG~Ds~Gia~~~~~~i~~~K~~g~i~~l~~~~~~~~~~~~~gIgHtR~AT~ 77 (608)
T Consensus 1 MCGI~G~~~~~~~~~~~~~l~~m~~~l~HRGPD~~g~~~---------------------------~~~~~lgh~RLsIi 53 (589)
T TIGR03104 1 MCGICGEIRFDGQAPDVAAVVRMLAVLAPRGPDAGGVHA---------------------------QGPVALGHRRLKII 53 (589)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEE---------------------------CCCEEEEEECCEEE
T ss_conf 982799996699877999999999546285978778185---------------------------39989997011142
Q ss_pred CCCCCCCCCCEEE--CCEEEEECCEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8997002675023--88999976815068999899997898897247615678887634320010267799999988751
Q gi|254780943|r 78 GLPNKENSHPHCI--EGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGS 155 (608)
Q Consensus 78 G~~~~~NahP~~~--~~~~vvHNG~I~N~~elr~~l~~~g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~ 155 (608)
T Consensus 54 Dl-~~~g~QP~~~~~~~~~ivfNGEIYN~~eLr~eL~~~g~~f~t~sDtEvll~~y~~---~G-------~~~l~~l~Gm 122 (589)
T TIGR03104 54 DL-SEASQQPMVDAELGLALVFNGCIYNYRELRAELEGLGYRFFSDGDTEVILKAYHA---WG-------RDCVSRFNGM 122 (589)
T ss_pred CC-CCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---HH-------HHHHHHHCCE
T ss_conf 78-8568999666999989999847645999999998679972899809999999999---97-------9999973275
Q ss_pred HHHHHHCCCCCCEEEEEEC--C-CCEEEECCCCCEEEECCCCCCCCC---------------------C-------CEEE
Q ss_conf 2220100468723899974--9-960776089613661376201111---------------------1-------0379
Q gi|254780943|r 156 YSIAVIFEDDPHSIIVARK--G-PPLIIGHGEGEMFVGSDVTALTLL---------------------T-------DKVT 204 (608)
Q Consensus 156 ya~~il~~~~p~~i~~ar~--g-sPL~iG~~~~~~~vaSd~~al~~~---------------------t-------~~~~ 204 (608)
T Consensus 123 FAfai~D~~~-~~l~laRDr~GiKPLYY~~~~~~~~FaSEikall~~~~~~~~~~~~~l~~yl~~~~~~~~~~T~f~~I~ 201 (589)
T TIGR03104 123 FAFAIWERDS-GRLLLARDRLGIKPLYYAEDAGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVR 201 (589)
T ss_pred EEEEEECCCC-CEEEEEECCCCCCCEEEEEECCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 8999980788-889998557778405999609879993353899847676541136789998522566589854035869
Q ss_pred ECCCCEEEEEECCC
Q ss_conf 82765188973057
Q gi|254780943|r 205 YMEDGDWAIIRNSG 218 (608)
Q Consensus 205 ~L~dgei~~i~~~~ 218 (608)
T Consensus 202 ~l~pG~~l~~~~~~ 215 (589)
T TIGR03104 202 KLPPATWMTVEPDG 215 (589)
T ss_pred EECCCEEEEEECCC
T ss_conf 95894499996799