HHsearch alignment for GI: 254780943 and conserved domain: cd00713

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.22  E-value=1.8e-10  Score=91.79  Aligned_cols=199  Identities=20%  Similarity=0.279  Sum_probs=123.4

Q ss_pred             HHHHHHHHHCCCCC-EEEEEEEE-CCEEEEEECCCCHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEC
Q ss_conf             99999976315874-34899995-892999945865899887---52103478654465104543889970026750238
Q gi|254780943|r   17 LFKALKRLEYRGYD-SSGMATIC-DGKIQCVRAQGKLSELEK---ELNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIE   91 (608)
Q Consensus        17 l~~~L~~Le~RG~D-s~Gia~~~-~~~i~~~K~~g~i~~l~~---~~~~~~~~~~~gIgHtR~AT~G~~~~~NahP~~~~   91 (608)
T Consensus       148 Ly~~Rk~ie~~~~~~~~~fYi~SlSsrtIVYKGml~~~ql~~fY~DL~d~~~~s~~al~H~RFSTNTfPsW~lAqPfR--  225 (413)
T cd00713         148 LYLLRKRIEKAIRAADEDFYVCSLSSRTIVYKGMLLPEQLGQFYPDLQDPRFESAFALVHSRFSTNTFPSWPLAQPFR--  225 (413)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCH--
T ss_conf             999999999998844788699753514178641257899988616636976589998788305689999873027550--


Q ss_pred             CEEEEECCEECCH------HHHHHHHHH----------C-CCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHH----
Q ss_conf             8999976815068------999899997----------8-988972476156788876343200102677999999----
Q gi|254780943|r   92 GIAVTHNGIIENF------SRLKKEHFS----------S-QQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQ----  150 (608)
Q Consensus        92 ~~~vvHNG~I~N~------~elr~~l~~----------~-g~~f~s~tDsEvi~~li~~~~~~~~~~~~ai~~~~~----  150 (608)
T Consensus       226 --~laHNGEINTi~GN~nwm~aRe~~~~s~~~~~~~~~l~Pi~~~~~SDSa~lDn~lElL~~~Grsl~~a~~mliPeaw~  303 (413)
T cd00713         226 --YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQ  303 (413)
T ss_pred             --HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHC
T ss_conf             --000276300156579999987776418753021886478769998446689999999974699899999873956343


Q ss_pred             ---------------------HHHHHHHHHHHCCCCCCEEEEE---ECC-CCEEEECCCC-CEEEECCCCCCCCCCCEEE
Q ss_conf             ---------------------8875122201004687238999---749-9607760896-1366137620111110379
Q gi|254780943|r  151 ---------------------CLTGSYSIAVIFEDDPHSIIVA---RKG-PPLIIGHGEG-EMFVGSDVTALTLLTDKVT  204 (608)
Q Consensus       151 ---------------------~l~G~ya~~il~~~~p~~i~~a---r~g-sPL~iG~~~~-~~~vaSd~~al~~~t~~~~  204 (608)
T Consensus       304 ~~~~m~~~~rafYeY~s~~mEPWDGPAai~ft--d--G~~iga~LDRNGLRP~Ry~iT~D~~~i~aSE~Gvv~~~~~~v~  379 (413)
T cd00713         304 NNPTMDPELRAFYEYHSSLMEPWDGPAAIAFT--D--GRQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVV  379 (413)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEE--C--CCEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCHHHCE
T ss_conf             68779999999999998318877787589984--6--9889998226889842589974998999816986458878822


Q ss_pred             ---ECCCCEEEEEECCCCEECC
Q ss_conf             ---8276518897305741003
Q gi|254780943|r  205 ---YMEDGDWAIIRNSGLTIYD  223 (608)
Q Consensus       205 ---~L~dgei~~i~~~~~~i~~  223 (608)
T Consensus       380 ~kgrL~PG~m~~vD~~~g~i~~  401 (413)
T cd00713         380 EKGRLGPGEMLLVDLEEGRILD  401 (413)
T ss_pred             ECCCCCCCCEEEEECCCCEECC
T ss_conf             1368799816999987896815