HHsearch alignment for GI: 254780943 and conserved domain: cd05014
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=97.84 E-value=0.00033 Score=48.29 Aligned_cols=102 Identities=24% Similarity=0.256 Sum_probs=81.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 14552136644999999999999742211442324314463788079871899944801468899999999827980899
Q gi|254780943|r 465 TLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF 544 (608)
Q Consensus 465 ~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~ 544 (608)
T Consensus 2 RI~~~GvG~S~~va~~~~~kl~r~G-~~s~~~~~~~~~~~~~~~i~~~Dv~i~iS~SG~T~e-~~~~~~~ak~~g~~vI~ 79 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTG-TPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDE-LLNLLPHLKRRGAPIIA 79 (128)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHCC-CCEEECCCHHHHHCCCCCCCCCCEEEEEECCCCCHH-HHHHHHHHHHCCCCEEE
T ss_conf 4999942679999999999999579-945754731555411347789999999979999867-99999999863785899
Q ss_pred EECCCCCCCCCCCCCCEEECCCCCH
Q ss_conf 9565321000134662798688781
Q gi|254780943|r 545 ITDEEGLKRQDFPSIETIVLPSMGE 569 (608)
Q Consensus 545 I~~~~~~~~~~~~~~~~i~iP~~~~ 569 (608)
T Consensus 80 iT~~~~S~La~~ad-~~l~~~~~eE 103 (128)
T cd05014 80 ITGNPNSTLAKLSD-VVLDLPVEEE 103 (128)
T ss_pred EECCCCCHHHHHCC-EEEECCCCCC
T ss_conf 98799996799689-8997799865